format-version: 1.2 data-version: 2011-12-14 date: 13:12:2011 22:14 saved-by: cjm subsetdef: defined_by_ordinal_series "classes that are defined by relative position counting from first in a series in an individual organism rather than by homology" subsetdef: developmental_classification "developmental_classification" subsetdef: disjointness_axiom_removed "A class which has a weakened disjointness axiom, to avoid inconsistency. These are kept separately in the uberon_disjoint_from_strict ontology." subsetdef: dubious_grouping "Indicates that subclasses in AOs may be inappropriately linked" subsetdef: early_development "A class that represents an early developmental structure, like a blastocyst. This part of the ontology is undergoing review to remove inappropriate grouping classes." subsetdef: emapa_ehdaa2 "derived from the union of EHDAA2 and EMAPA - still to be checked" subsetdef: functional_classification "functional_classification" subsetdef: grouping_class "Subset consisting of classes creating for grouping purposes" subsetdef: inconsistent_with_fma "classes that have some inconsistency with FMA" subsetdef: inherited_grouping_class "A grouping class that originates in two or more separate anatomical ontologies. Includes 'region of X' type terms" subsetdef: major_organ "somewhat fuzzy grouping for analysis purposes, currently composed of something like: liver, heart, skeletal, kidney, bladder, brain, skin, mouth, esophagus, stomach, small intestine, large intestines, trachea nose, lungs, brain, spinal cord, peripheral nerves, kidneys, ureters, bladder, urethra, gonads" subsetdef: metazoa_core "core classes typically found across metazoa. one purpose is to create a rough set of terms that could be used to start a new metazoan AO. Note this subset is not yet fully fleshed out" subsetdef: organ_slim "organs, excluding individual muscles and skeletal elements" subsetdef: uberon_slim "Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms" subsetdef: upper_level "abstract upper-level terms not directly useful for analysis" subsetdef: upper_ontology_conflict "Terms in this subset group together terms from different anatomy ontologies that have conflicting upper ontology/CARO assignments. For example, in FMA the naris is immaterial and in ZFA it is an organism subdivision." subsetdef: vertebrate_core "core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO" synonymtypedef: ATTRIBUTION_REQUIRED "expert consultation and attribution required" synonymtypedef: DUBIOUS "dubious or contested synonym" synonymtypedef: HOMOLOGY "a synonym made on the basis of a possibly homologous structure in another species" synonymtypedef: INCONSISTENT "indicates that a synonym is used in an inconsistent or confusing way, typically between species" synonymtypedef: PLURAL "plural term" synonymtypedef: SENSU "taxonomic disambiguation" default-namespace: uberon idspace: NIF_GrossAnatomy http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl# idspace: Wikipedia http://en.wikipedia.org/wiki/ treat-xrefs-as-equivalent: CARO treat-xrefs-as-equivalent: GO treat-xrefs-as-equivalent: BSPO treat-xrefs-as-equivalent: NIF_GrossAnatomy treat-xrefs-as-equivalent: BILA treat-xrefs-as-equivalent: OG treat-xrefs-as-equivalent: VAO treat-xrefs-as-has-subclass: EMAPA treat-xrefs-as-has-subclass: EHDAA treat-xrefs-as-has-subclass: EHDAA2 treat-xrefs-as-has-subclass: OGES treat-xrefs-as-has-subclass: EV treat-xrefs-as-reverse-genus-differentia: AAO part_of NCBITaxon:8292 treat-xrefs-as-reverse-genus-differentia: FBbt part_of NCBITaxon:7227 treat-xrefs-as-reverse-genus-differentia: FMA part_of NCBITaxon:9606 treat-xrefs-as-reverse-genus-differentia: HAO part_of NCBITaxon:7399 treat-xrefs-as-reverse-genus-differentia: MA part_of NCBITaxon:10088 treat-xrefs-as-reverse-genus-differentia: MFO part_of NCBITaxon:8089 treat-xrefs-as-reverse-genus-differentia: SPD part_of NCBITaxon:6893 treat-xrefs-as-reverse-genus-differentia: TGMA part_of NCBITaxon:44484 treat-xrefs-as-reverse-genus-differentia: TADS part_of NCBITaxon:6939 treat-xrefs-as-reverse-genus-differentia: TAO part_of NCBITaxon:32443 treat-xrefs-as-reverse-genus-differentia: WBbt part_of NCBITaxon:6237 treat-xrefs-as-reverse-genus-differentia: XAO part_of NCBITaxon:8353 treat-xrefs-as-reverse-genus-differentia: ZFA part_of NCBITaxon:7954 treat-xrefs-as-reverse-genus-differentia: ncithesaurus part_of NCBITaxon:40674 ontology: uberon [Term] id: UBERON:0000000 name: processual entity def: "An occurrent [span:Occurrent] that exists in time by occurring or happening, has temporal parts and always involves and depends on some entity." [span:ProcessualEntity] subset: upper_level disjoint_from: UBERON:0001062 ! anatomical entity created_by: cjm creation_date: 2009-04-09T05:51:24Z [Term] id: UBERON:0000002 name: uterine cervix def: "Lower, narrow portion of the uterus where it joins with the top end of the vagina." [Wikipedia:Cervix] comment: This class was created automatically from a combination of ontologies. subset: uberon_slim synonym: "canalis cervicis uteri" EXACT [FMA:17740, FMA:TA] synonym: "cervical canal" EXACT [] synonym: "cervical canal of uterus" EXACT [] synonym: "cervix" EXACT [] synonym: "cervix of uterus" EXACT [] synonym: "neck of uterus" EXACT [] synonym: "uterine cervix" EXACT [] xref: BTO:0001421 xref: EFO:0000979 xref: EV:0100114 xref: FMA:17740 xref: GAID:376 xref: MA:0000392 xref: MAT:0000292 xref: MESH:A.05.360.319.679.256 xref: OG:0001359 xref: OpenCyc:Mx4rvVipEJwpEbGdrcN5Y29ycA xref: SCTID:245494008 is_a: UBERON:0001560 {source="FMA"} ! neck of organ is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: continuous_with UBERON:0000996 ! vagina relationship: part_of UBERON:0000995 ! uterus [Term] id: UBERON:0000003 name: naris def: "Orifice of the olfactory system. The naris is the route by which odorants enter the olfactory system[MAH]." [UBERON:MAH] comment: consistency notes: we have classified this as an orifice, according to FMA. Note that in FMA, orifices are immaterial entities, but in ZFA this is a surface structure. Taxon notes: in actinopterygians, both pairs of nares are external. In tetrapods, the exhalant empties into the buccal cavity subset: uberon_slim subset: upper_ontology_conflict subset: vertebrate_core xref: AAO:0000311 xref: EHDAA:9083 xref: EHDAA2:0001225 xref: EMAPA:17847 xref: galen:Naris xref: MA:0000282 xref: OG:0000663 xref: SCTID:272650008 xref: TAO:0000550 xref: ZFA:0000550 is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system is_a: UBERON:0000161 {source="FMA"} ! orifice relationship: part_of UBERON:0005725 intersection_of: UBERON:0000161 ! orifice intersection_of: part_of UBERON:0005725 ! olfactory system relationship: part_of UBERON:0000033 {source="ZFA"} ! head [Term] id: UBERON:0000004 name: olfactory apparatus def: "a protuberance in vertebrates that houses the nostrils, or nares, which admit and expel air for respiration in conjunction with the mouth. Behind the nose are the olfactory mucosa and the sinuses. Behind the nasal cavity, air next passes through the pharynx, shared with the digestive system, and then into the rest of the respiratory system. In humans, the nose is located centrally on the face; on most other mammals, it is on the upper tip of the snout[WP]. GO: The nose is the specialized structure of the face that serves as the organ of the sense of smell and as part of the respiratory system. Includes the nasi externus (external nose) and cavitas nasi (nasal cavity)." [Wikipedia:Nose] comment: TODO - distinguish generic olfactory apparatus from nose; we have olfactory organ for the generic organ - add new class 'olfactory structure'? subset: major_organ subset: uberon_slim subset: vertebrate_core synonym: "nasal sac" EXACT SENSU [ZFA:0000047] synonym: "nose" EXACT [] synonym: "peripheral olfactory organ" EXACT [] synonym: "proboscis" RELATED [] xref: BTO:0000840 xref: EFO:0000828 xref: EHDAA:1502 xref: EHDAA2:0001274 xref: EMAPA:16542 xref: EV:0100037 xref: EV:0100370 xref: FMA:46472 xref: GAID:77 xref: galen:Nose xref: MA:0000281 xref: MAT:0000139 xref: MESH:A.01.456.505.733 xref: MIAA:0000139 xref: ncithesaurus:Nose xref: OpenCyc:Mx4rvViCbJwpEbGdrcN5Y29ycA xref: SCTID:181195007 xref: TAO:0000047 xref: ZFA:0000047 is_a: UBERON:0002268 ! olfactory organ relationship: develops_from UBERON:0003050 ! olfactory placode relationship: part_of UBERON:0001004 ! respiratory system relationship: part_of UBERON:0004089 ! midface [Term] id: UBERON:0000005 name: chemosensory organ subset: functional_classification subset: uberon_slim synonym: "chemosensory sensory organ" EXACT [FBbt:00005157] xref: FBbt:00005157 is_a: UBERON:0000020 ! implied link automatically realized ! sense organ is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system relationship: part_of UBERON:0001016 ! nervous system relationship: part_of UBERON:0005726 ! chemosensory system [Term] id: UBERON:0000006 name: islet of Langerhans def: "Regions of the pancreas that contain its endocrine (i.e., hormone-producing) cells." [Wikipedia:Islet_of_Langerhans] comment: A primitive exocrine pancreas can be found in holocephalan cartilaginous fish; a pancreatic duct directly ending in the gut lumen is connected to a glandular structure made of exocrine cells and associated with cell islets, which comprises three different hormone-producing cell types: insulin, somatostatin and glucagon (Yui and Fujita, 1986)[PMID:16417468] subset: uberon_slim synonym: "island of Langerhans" RELATED [BTO:0000991] synonym: "island of pancreas" RELATED [BTO:0000991] synonym: "islets of langerhans" RELATED [] synonym: "pancreatic insula" EXACT [] synonym: "pancreatic islet" EXACT [] xref: AAO:0010406 xref: BTO:0000991 xref: EFO:0000856 xref: EMAPA:19246 xref: EMAPA:19247 xref: EMAPA:19248 xref: EV:0100130 xref: FMA:16016 xref: GAID:324 xref: MA:0000127 xref: MAT:0000076 xref: MESH:A.03.734.414 xref: MIAA:0000076 xref: ncithesaurus:Islet_of_Langerhans xref: OG:0000646 xref: XAO:0000159 is_a: UBERON:0000064 ! organ part is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0000016 ! endocrine pancreas [Term] id: UBERON:0000007 name: pituitary gland def: "The pituitary gland is an endocrine gland that secretes hormones that regulate many other glands [GO]. An endocrine gland located ventral to the diencephalon and derived from mixed neuroectodermal and non neuroectodermal origin [ZFIN]." [Wikipedia:Pituitary_gland, ZFIN:curator] comment: Taxon notes: The lamprey possesses a distinct pituitary organ and hormones, the ascidian does not show distinct evidence of them [Sower S, Freamat M, Kavanaugh S. The origins of the vertebrate hypothalamic–pituitary–gonadal (HPG) and hypothalamic–pituitary–thyroid (HPT) endocrine systems: new insights from lampreys. Gen Comp Endocrinol 2009;161:20-9] subset: organ_slim subset: uberon_slim subset: vertebrate_core synonym: "glandula pituitaria" RELATED [BTO:0001073] synonym: "hypophysis" RELATED [ZFA:0000118] synonym: "hypophysis cerebri" RELATED [MA:0000176] synonym: "pituitary" EXACT [BTO:0001073] synonym: "pituitary body" EXACT [BTO:0001073] xref: AAO:0010536 xref: BM:Die-Hy-HY xref: BTO:0001073 xref: EFO:0000857 xref: EHDAA:2183 xref: EHDAA:4477 xref: EHDAA2:0001471 xref: EMAPA:16647 xref: EMAPA:16898 xref: EV:0100132 xref: FMA:13889 xref: GAID:457 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/97/Gray1180.png/200px-Gray1180.png xref: MA:0000176 xref: MAT:0000077 xref: MESH:A.06.407.747 xref: MIAA:0000077 xref: ncithesaurus:Pituitary_Gland xref: NIF_GrossAnatomy:birnlex_1353 xref: OG:0000143 xref: OpenCyc:Mx4rv6NQYJwpEbGdrcN5Y29ycA xref: SCTID:181125003 xref: TAO:0000118 xref: XAO:0000017 xref: ZFA:0000118 is_a: UBERON:0002368 {source="BTO"} ! endocrine gland is_a: UBERON:0003296 ! implied link automatically realized ! gland of diencephalon relationship: develops_from UBERON:0000924 {source="Wikipedia"} ! ectoderm relationship: has_part UBERON:0002196 ! adenohypophysis relationship: has_part UBERON:0002198 ! neurohypophysis relationship: part_of UBERON:0001894 {source="ZFA"} ! diencephalon [Term] id: UBERON:0000009 name: submucosa def: "A layer of dense irregular connective tissue in the gastrointestinal tract that supports the mucosa, as well as joins the mucosa to the bulk of underlying smooth muscle (fibers running circularly within layer of longitudinal muscle). [WP,unvetted]." [Wikipedia:Submucosa] comment: see comments re FMA for mucosa subset: uberon_slim synonym: "organ submucosa" EXACT [FMA:85391] synonym: "region of submucosa" EXACT [FMA:85392] synonym: "submucosa of organ" EXACT [FMA:85391] synonym: "submucosa of region of organ" EXACT [FMA:85392] synonym: "submucous layer" RELATED [BTO:0002107] synonym: "tela submucosa" RELATED [BTO:0002107] xref: BTO:0002107 xref: FMA:85391 xref: FMA:85392 xref: http://upload.wikimedia.org/wikipedia/en/thumb/4/4e/Ens.png/200px-Ens.png xref: ncithesaurus:Submucosa is_a: UBERON:0004923 ! organ component layer relationship: has_part UBERON:0002384 ! connective tissue [Term] id: UBERON:0000010 name: peripheral nervous system def: "Nervous structures including ganglia outside of the central nervous system. Divided into somatic nervous system and autonomic nervous system" [FB:gg, OMD:peripheral+nervous+system, Wikipedia:Peripheral_nervous_system, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "PNS" RELATED [] xref: AAO:0000429 xref: BILA:0000081 xref: BTO:0001028 xref: EFO:0000891 xref: EHDAA:2893 xref: EHDAA2:0001445 xref: EMAPA:16665 xref: EMAPA:18370 xref: EV:0100335 xref: FBbt:00005098 xref: FMA:9903 xref: GAID:715 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/ba/Nervous_system_diagram.png/200px-Nervous_system_diagram.png xref: MA:0000218 xref: MAT:0000338 xref: MESH:A.08.800 xref: MIAA:0000338 xref: ncithesaurus:Peripheral_Nervous_System xref: NIF_GrossAnatomy:birnlex_1111 xref: OG:0000399 xref: SCTID:362292005 xref: TAO:0000142 xref: XAO:0000178 xref: ZFA:0000142 is_a: UBERON:0000073 ! regional part of nervous system relationship: part_of UBERON:0001016 ! nervous system relationship: spatially_disjoint_from UBERON:0001017 ! central nervous system [Term] id: UBERON:0000011 name: parasympathetic nervous system def: "The parasympathetic nervous system (PSNS) is a division of the autonomic nervous system (ANS), along with the sympathetic nervous system (SNS) and enteric nervous system (ENS). The ANS is a subdivision of the peripheral nervous system (PNS). ANS sends fibers to three tissues: cardiac muscle, smooth muscle, or glandular tissue. This stimulation, sympathetic or parasympathetic, is to control smooth muscle contraction, regulate cardiac muscle, or stimulate or inhibit glandular secretion [Wikipedia]. The parasympathetic nervous system is one of the two divisions of the vertebrate autonomic nervous system. Parasympathetic nerves emerge cranially as pre ganglionic fibers from oculomotor, facial, glossopharyngeal and vagus and from the sacral region of the spinal cord. Most neurons are cholinergic and responses are mediated by muscarinic receptors. The parasympathetic system innervates, for example: salivary glands, thoracic and abdominal viscera, bladder and genitalia [GO]." [Wikipedia:Parasympathetic_nervous_system] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "parasympathetic part of autonomic division of nervous system" EXACT [] synonym: "pars parasympathica divisionis autonomici systematis nervosi" EXACT [FMA:9907, FMA:TA] synonym: "PNS - parasympathetic" EXACT [] xref: AAO:0010488 xref: BTO:0001833 xref: EFO:0000894 xref: EHDA:10096 xref: EHDAA:4655 xref: EHDAA2:0001402 xref: EMAPA:17270 xref: FMA:9907 xref: GAID:708 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f7/Gray839.png/200px-Gray839.png xref: MA:0000223 xref: MAT:0000101 xref: MESH:A.08.800.050.600 xref: MIAA:0000101 xref: ncithesaurus:Parasympathetic_Nervous_System xref: NIF_GrossAnatomy:birnlex_2517 xref: OG:0000755 xref: SCTID:362496006 xref: TAO:0001575 xref: ZFA:0001575 is_a: UBERON:0002410 ! autonomic nervous system relationship: part_of UBERON:0002410 ! autonomic nervous system [Term] id: UBERON:0000012 name: somatic nervous system def: "The part of the peripheral nervous system consisting of efferent nerves responsible for stimulating muscle contraction, including all the neurons connected with skeletal muscles, skin, and sense organs[WP, modified]." [Wikipedia:Somatic_nervous_system] subset: uberon_slim synonym: "PNS - somatic" EXACT [] synonym: "somatic nervous system, somatic division" EXACT [NIF_GrossAnatomy:nlx_anat_100301] synonym: "somatic peripheral nervous system" EXACT [NIF_GrossAnatomy:nlx_anat_100301] xref: EFO:0000892 xref: EFO:0000898 xref: FMA:9904 xref: MA:0002850 xref: MAT:0000099 xref: MAT:0000342 xref: MIAA:0000099 xref: MIAA:0000342 xref: NIF_GrossAnatomy:nlx_anat_100301 xref: WBbt:0005760 is_a: UBERON:0000073 ! regional part of nervous system relationship: part_of UBERON:0000010 ! peripheral nervous system [Term] id: UBERON:0000013 name: sympathetic nervous system def: "The Sympathetic Nervous System (SNS) is a branch of the autonomic nervous system along with the enteric nervous system and parasympathetic nervous system. It is always active at a basal level (called sympathetic tone) and becomes more active during times of stress. Its actions during the stress response comprise the fight-or-flight response [Wikipedia]. The sympathetic nervous system is one of the two divisions of the vertebrate autonomic nervous system (the other being the parasympathetic nervous system). The sympathetic preganglionic neurons have their cell bodies in the thoracic and lumbar regions of the spinal cord and connect to the paravertebral chain of sympathetic ganglia. Innervate heart and blood vessels, sweat glands, viscera and the adrenal medulla. Most sympathetic neurons, but not all, use noradrenaline as a post-ganglionic neurotransmitter [GO]." [Wikipedia:Sympathetic_nervous_system] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "pars sympathica divisionis autonomici systematis nervosi" EXACT [FMA:9906, FMA:TA] synonym: "sympathetic nervous system" EXACT [] synonym: "sympathetic part of autonomic division of nervous system" EXACT [] xref: AAO:0010487 xref: BTO:0001832 xref: EFO:0000893 xref: EHDAA:3769 xref: EHDAA2:0001971 xref: EMAPA:16985 xref: FMA:9906 xref: GAID:710 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/77/Gray838.png/200px-Gray838.png xref: MA:0000225 xref: MESH:A.08.800.050.800 xref: MIAA:0000100 xref: ncithesaurus:Sympathetic_Nervous_System xref: NIF_GrossAnatomy:birnlex_2516 xref: OG:0000384 xref: SCTID:362484004 xref: TAO:0001576 xref: ZFA:0001576 is_a: UBERON:0002410 ! autonomic nervous system relationship: part_of UBERON:0002410 ! autonomic nervous system [Term] id: UBERON:0000014 name: zone of skin def: "A sub-region of the skin. Note the distinct between the entire skin of the body, of which there is only 1 in an organism, and zones of skin, of which there can be many. Examples: skin of knee" [GOC:cjm, Wikipedia:Skin] comment: we assume that mouse, HOG and GAID all mean zone of skin when they say skin. We also choose skin as an exact synonym, as it is more intuitive synonym: "portion of skin" EXACT [] synonym: "region of skin" EXACT [] synonym: "skin" EXACT [MA:0000151] synonym: "skin region" EXACT [] synonym: "skin zone" EXACT [] xref: EHDAA:6530 xref: EHDAA2:0001844 xref: EV:0100152 xref: FMA:86166 xref: GAID:933 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6d/Skin.svg/200px-Skin.svg.png xref: MA:0000151 xref: MAT:0000284 xref: MESH:A.17.815 xref: MIAA:0000284 xref: OG:0000860 xref: OpenCyc:Mx4rvVjX3ZwpEbGdrcN5Y29ycA xref: SCTID:20795001 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002097 ! skin of body [Term] id: UBERON:0000015 name: anatomical boundary def: "Structural anatomical relation which holds between each anatomical entity of one to three dimensions and some immaterial anatomical entity of one lower dimension such that the latter demarcates (delimits) the former from its neighborhood." [FMA:256502] synonym: "anatomical boundary entity" EXACT [FMA:50705] xref: AEO:0000192 xref: FMA:50705 is_a: UBERON:0000466 ! immaterial anatomical entity [Term] id: UBERON:0000016 name: endocrine pancreas def: "The endocrine pancreas is made up of islet cells that produce insulin, glucagon and somatostatin[GO]." [GOC:GO, Wikipedia:Endocrine_pancreas] subset: organ_slim subset: uberon_slim subset: vertebrate_core synonym: "endocrine pancreas" EXACT [] synonym: "endocrine part of pancreas" RELATED [BTO:0000650] synonym: "islets of Langerhans" RELATED [] synonym: "pars endocrina pancreatis" EXACT [] xref: BTO:0000650 xref: EV:0100129 xref: FMA:16018 xref: MA:0001582 xref: MESH:A.03.734.414 xref: ncithesaurus:Endocrine_Pancreas xref: OG:0000049 xref: SCTID:361339003 xref: TAO:0001260 xref: ZFA:0001260 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002075 ! viscus relationship: develops_from UBERON:0003923 ! dorsal pancreatic bud relationship: part_of UBERON:0001264 ! pancreas [Term] id: UBERON:0000017 name: exocrine pancreas def: "The exocrine pancreas produces and store zymogens of digestive enzymes, such as chymotrypsinogen and trypsinogen in the acinar cells [GO]. The exocrine pancreas is composed of acinar epithelial cells and ductal epithelium that manufacture the proteolytic enzymes and bicarbonate required for digestion." [GOC:GO, Wikipedia:Exocrine_pancreas] subset: organ_slim subset: uberon_slim subset: vertebrate_core synonym: "exocrine pancreas" EXACT [] synonym: "exocrine part of pancreas" RELATED [BTO:0000434] synonym: "pars exocrina pancreatis" EXACT [] xref: AAO:0010407 xref: BTO:0000434 xref: EV:0100093 xref: FMA:16017 xref: MA:0002415 xref: ncithesaurus:Exocrine_Pancreas xref: OG:0000048 xref: SCTID:248202004 xref: TAO:0001249 xref: XAO:0000137 xref: ZFA:0001249 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002075 ! viscus relationship: develops_from UBERON:0003924 ! ventral pancreatic bud relationship: part_of UBERON:0001264 ! pancreas relationship: part_of UBERON:0002330 ! exocrine system [Term] id: UBERON:0000018 name: compound eye def: "A light sensing organ composed of ommatidia" [FB:gg, Wikipedia:Compound_eye] subset: organ_slim subset: uberon_slim synonym: "adult compound eye" RELATED [] synonym: "Facettenauge" RELATED [BTO:0001921] synonym: "insect eye" RELATED [] synonym: "Komplexauge" RELATED [BTO:0001921] synonym: "zusammengesetztes Auge" RELATED [BTO:0001921] xref: BTO:0001921 xref: FBbt:00004508 xref: HAO:0000217 xref: TGMA:0000024 is_a: UBERON:0000970 ! eye relationship: has_part UBERON:0000971 ! ommatidium [Term] id: UBERON:0000019 name: camera-type eye alt_id: UBERON:FMA_12513-MIAA_0000283-XAO_0000181 def: "GO: The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field[FMA]." [GO:0043010, Image:http\://genome.cshlp.org/content/14/8/1555/F1.large.jpg, Image:http\://www.pnas.org/content/94/6/2098/F1.large.jpg] comment: FMA distinguishes Eye (subdivision of face) from Eyeball (organ). Here we are referring to the organ but we also include Eye as being subsumed subset: uberon_slim subset: vertebrate_core synonym: "eyeball" EXACT [FMA:12513] synonym: "Orbital part of face" RELATED [] synonym: "Orbital region" RELATED [] synonym: "regio orbitalis" EXACT [FMA:54448, FMA:TA] synonym: "vertebrate eye" NARROW [] xref: AAO:0010340 xref: BTO:0004688 xref: EHDAA:936 xref: EHDAA2:0000484 xref: FMA:12513 xref: FMA:54448 xref: MA:0000261 xref: ncithesaurus:Eye xref: NIF_GrossAnatomy:birnlex_1169 xref: OpenCyc:Mx8Ngx4rwKSh9pwpEbGdrcN5Y29ycB4rvVil5pwpEbGdrcN5Y29ycB4rvViTvpwpEbGdrcN5Y29ycA xref: TAO:0000107 xref: XAO:0000179 xref: ZFA:0000107 is_a: UBERON:0000047 ! simple eye relationship: part_of UBERON:0004088 ! ocular region [Term] id: UBERON:0000020 name: sense organ def: "An organ that is part of a sense organ system." [Wikipedia:Sense_organ] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "organ of sense organ system" EXACT [OBOL:automatic] synonym: "organ of sensory organ system" EXACT [OBOL:automatic] synonym: "organ of sensory system" EXACT [OBOL:automatic] synonym: "sense organ system organ" EXACT [OBOL:automatic] synonym: "sensillum" NARROW [WBbt:0006929] synonym: "sensor" RELATED [] synonym: "sensory organ" EXACT [] synonym: "sensory organ system organ" EXACT [OBOL:automatic] synonym: "sensory system organ" EXACT [OBOL:automatic] synonym: "Sinnesorgan" RELATED [BTO:0000202] xref: AEO:0000094 xref: BTO:0000202 xref: EHDAA:500 xref: EHDAA2:0001824 xref: EMAPA:16192 xref: FBbt:00005155 xref: GAID:63 xref: HAO:0000930 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c0/Gray722.png/200px-Gray722.png xref: MA:0000017 xref: MESH:A.09 xref: OG:0001407 xref: SCTID:244485009 xref: WBbt:0006929 is_a: UBERON:0000062 ! organ relationship: part_of UBERON:0001032 intersection_of: UBERON:0000062 ! organ intersection_of: part_of UBERON:0001032 ! sensory system [Term] id: UBERON:0000021 name: cutaneous appendage def: "Appendage that protrudes from the skin." [UBERON:cjm] comment: examples: hair, nail (FMA); feather, claw, hoof, horn, wattle, spur, beak, scale(?), antler, bristle. Mammary glands develop by similar mechanisms, and their is an argument for including them here (e.g. PMID:20484386), but they don't fit the current definition. subset: uberon_slim synonym: "epidermal appendage" NARROW [] synonym: "epidermal growth" RELATED [] synonym: "skin appendage" EXACT [FMA:71012] xref: FMA:71012 xref: SCTID:276160000 is_a: UBERON:0000026 ! appendage relationship: part_of UBERON:0002097 ! skin of body [Term] id: UBERON:0000022 name: feather def: "one of the epidermal growths that form the distinctive outer covering, or plumage, on birds. Feathers are formed in tiny follicles in the epidermis, or outer skin layer, that produce keratin proteins. The β-keratins in feathers, beaks and claws — and the claws, scales and shells of reptiles — are composed of protein strands hydrogen-bonded into β-pleated sheets, which are then further twisted and crosslinked by disulfide bridges into structures even tougher than the α-keratins of mammalian hair, horns and hoof. The exact signals that induce the growth of feathers on the skin are not known but it has been found that the transcription factor cDermo-1 induces the growth of feathers on skin and scales on the leg." [Wikipedia:Feather] comment: They are among the characteristics that distinguish the extant Aves from other living groups. Feathers have also been noticed in those Theropoda which have been termed feathered dinosaurs. Although feathers cover most parts of the body of birds, they arise only from certain well-defined tracts on the skin. They aid in flight, thermal insulation, waterproofing and coloration that helps in communication and protection subset: uberon_slim xref: BTO:0000447 xref: EFO:0000955 xref: GAID:1214 xref: http://upload.wikimedia.org/wikipedia/commons/4/41/Parts_of_feather_modified.jpg xref: MAT:0000156 xref: MESH:A.13.370 xref: OpenCyc:Mx4rvVjW-5wpEbGdrcN5Y29ycA xref: SCTID:410027006 is_a: UBERON:0000021 ! cutaneous appendage is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: develops_from UBERON:0001003 ! epidermis [Term] id: UBERON:0000023 name: wing def: "Appendage that is used to produce lift for flight through the air." [Wikipedia:Wing] comment: This class is not monophyletic. See also: GO:0007629 subset: grouping_class subset: uberon_slim xref: BTO:0001463 xref: EFO:0000885 xref: GAID:1217 xref: MAT:0000202 xref: MESH:A.13.395.823 xref: MIAA:0000202 is_a: UBERON:0000026 ! appendage [Term] id: UBERON:0000024 name: forelimb wing def: "Forelimb that is used to produce lift for flight through the air." [] comment: TODO - check specific definition of forelimb is_a: UBERON:0000023 ! wing is_a: UBERON:0002102 ! forelimb relationship: homologous_to UBERON:0002102 ! forelimb [Term] id: UBERON:0000025 name: tube def: "Epithelial and endothelial tubes transport gases, liquids and cells from one site to another and form the basic structure of many organs and tissues including lung and trachea, kidney, the mammary gland, the vascular system and the gastrointestinal and urinary-genital tracts. with tube shape and organization varying from the single-celled excretory organ in Caenorhabditis elegans to the branching trees of the mammalian kidney and insect tracheal system" [GO:0035295, PMID:12526790] synonym: "epithelial or endothelial tube" EXACT [] xref: galen:Tube xref: ncithesaurus:Tube is_a: UBERON:0004111 ! anatomical conduit [Term] id: UBERON:0000026 name: appendage def: "Major subdivision of an organism that protrudes from the body[DOS]. Organ or organ part that is attached to the body of an organism. For example a limb[GO, modified]. An appendage is an external body part, or natural prolongation, that protrudes from an organism's body, such as a vertebrate's limbs[BILA]." [BILA:0000018, GO:0048736, Wikipedia:Appendage] comment: GO includes tree trunks, but excludes antennae. We modify trunk to body in our definition. Note this is currently a subtype of organism subdivision - which would exclude feathers subset: uberon_slim synonym: "limbs/digits/tail" RELATED [MP:0000001] xref: AEO:0000193 xref: BILA:0000018 xref: CARO:0010003 xref: EFO:0000799 xref: EHDAA2:0003193 xref: EV:0100155 xref: FBbt:00007000 xref: HAO:0000144 xref: MAT:0000023 xref: MIAA:0000023 xref: ncithesaurus:Appendage xref: OpenCyc:Mx4rvViC-JwpEbGdrcN5Y29ycA xref: VAO:0000075 xref: XAO:0000218 is_a: UBERON:0000475 ! organism subdivision [Term] id: UBERON:0000029 name: lymph node def: "Oval or bean shaped bodies (1 - 30 mm in diameter) located along the lymphatic system. Lymph nodes are garrisons of B, T, and other immune cells. Lymph nodes are found all through the body, and act as filters or traps for foreign particles. They contain white blood cells that use oxygen to process. Thus they are important in the proper functioning of the immune system. The lymph node is surrounded by a fibrous capsule, and inside the lymph node the fibrous capsule extends to form trabeculae. The substance of the lymph node is divided into the outer cortex and the inner medulla surrounded by the former all around except for at the hilum, where the medulla comes in direct contact with the surface. Thin reticular fibers, elastin and reticular fibers form a supporting meshwork called reticular network (RN) inside the node, within which the white blood cells (WBCs), most prominently, lymphocytes are tightly packed as follicles in the cortex. Elsewhere, there are only occasional WBCs. The RN provides not just the structural support, but also provide surface for adhesion of the dendritic cells, macrophages and lymphocytes. It allows for exchange of material with blood through the high endothelial venules and provides the growth and regulatory factors necessary for activation and maturation of immune cells[WP]." [GAID:947, Wikipedia:Lymph_node] subset: uberon_slim subset: vertebrate_core xref: BTO:0000784 xref: EFO:0000872 xref: EV:0100050 xref: FMA:5034 xref: GAID:947 xref: galen:Lymphnode xref: MA:0000139 xref: MAT:0000442 xref: MESH:A.15.382.520.604.412 xref: ncithesaurus:Lymph_Node xref: OG:0001273 xref: OpenCyc:Mx4rwLPqLpwpEbGdrcN5Y29ycA xref: SCTID:181756000 xref: ZFA:0005318 is_a: UBERON:0000064 ! organ part relationship: continuous_with UBERON:0001473 ! lymphatic vessel relationship: has_part UBERON:0002391 ! lymph relationship: part_of UBERON:0002465 ! lymphoid system [Term] id: UBERON:0000030 name: lamina propria def: "A thin layer of loose connective tissue which lies beneath the epithelium and together with the epithelium constitutes the mucosa[WP]. The lamina propria contains capillaries and a central lacteal (lymph vessel) in the small intestine, as well as lymphoid tissue. Lamina propria also contains glands with the ducts opening on to the mucosal epithelium, that secrete mucus and serous secretions." [Wikipedia:Lamina_propria] subset: uberon_slim synonym: "lamina propria mucosa" EXACT [] synonym: "lamina propria mucosae" EXACT [] synonym: "tunica propria" RELATED [BTO:0002330] xref: BTO:0002330 xref: FMA:62517 xref: ncithesaurus:Lamina_Propria xref: SCTID:298225002 is_a: UBERON:0004923 ! organ component layer relationship: adjacent_to UBERON:0000483 ! epithelium relationship: has_part UBERON:0002384 ! connective tissue relationship: part_of UBERON:0000344 ! mucosa [Term] id: UBERON:0000031 name: lamina propria of trachea synonym: "lamina propria mucosa of trachea" EXACT [OBOL:automatic] synonym: "lamina propria mucosa of windpipe" EXACT [OBOL:automatic] synonym: "lamina propria mucosae of trachea" EXACT [OBOL:automatic] synonym: "lamina propria mucosae of windpipe" EXACT [OBOL:automatic] synonym: "lamina propria of windpipe" EXACT [OBOL:automatic] synonym: "trachea lamina propria" EXACT [] synonym: "trachea lamina propria mucosa" EXACT [OBOL:automatic] synonym: "trachea lamina propria mucosae" EXACT [OBOL:automatic] synonym: "tracheal lamina propria" EXACT [] synonym: "windpipe lamina propria" EXACT [OBOL:automatic] synonym: "windpipe lamina propria mucosa" EXACT [OBOL:automatic] synonym: "windpipe lamina propria mucosae" EXACT [OBOL:automatic] xref: MA:0001858 xref: ncithesaurus:Trachea_Lamina_Propria is_a: UBERON:0004779 ! implied link automatically realized ! respiratory system lamina propria relationship: part_of UBERON:0001005 intersection_of: UBERON:0000030 ! lamina propria intersection_of: part_of UBERON:0001005 ! respiratory airway relationship: part_of UBERON:0001005 ! respiratory airway [Term] id: UBERON:0000032 name: cranial structure def: "skeletal element that is part of a cranium." [UBERON:automatic] subset: uberon_slim is_a: UBERON:0004765 ! implied link automatically realized ! skeletal element relationship: part_of UBERON:0003128 intersection_of: UBERON:0004765 ! skeletal element intersection_of: part_of UBERON:0003128 ! cranium [Term] id: UBERON:0000033 name: head alt_id: UBERON:FBbt_00000004-FBbt_00003007-FMA_46565-FMA_7154-FMA_87596-MA_0000023-MA_0000316-MIAA_0000017-MIAA_0000149-MIAA_0000294-MIAA_0000340-WBbt_0005739-XAO_0003024-ZFA_0000737-ZFA_0001114 def: "The head is the anterior-most division of the body [GO]." [GO:0060322, Wikipedia:Head] subset: uberon_slim subset: vertebrate_core synonym: "adult head" NARROW [] synonym: "cephalic area" RELATED [SPD:0000016] synonym: "head (volume)" EXACT [FMA:7154] xref: AAO:0010335 xref: AEO:0000106 xref: BILA:0000115 xref: BTO:0000282 xref: EFO:0000964 xref: EHDAA2:0003106 xref: FBbt:00000004 xref: FMA:7154 xref: GAID:61 xref: galen:Head xref: HAO:0000397 xref: MA:0000023 xref: MAT:0000294 xref: MESH:A.01.456 xref: MIAA:0000294 xref: ncithesaurus:Head xref: NIF_GrossAnatomy:birnlex_1230 xref: OpenCyc:Mx4rEOLm4rgPEdmAAAACs6hRjg xref: OpenCyc:Mx4rvVi6YJwpEbGdrcN5Y29ycA xref: SCTID:302548004 xref: SPD:0000016 xref: TAO:0001114 xref: TGMA:0000002 xref: WBbt:0005739 xref: XAO:0003024 xref: ZFA:0001114 is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0000153 ! anterior region of body relationship: spatially_disjoint_from UBERON:0000948 ! heart relationship: spatially_disjoint_from UBERON:0002100 ! trunk [Term] id: UBERON:0000035 name: primary ovarian follicle synonym: "folliculus ovaricus primarius" EXACT [] synonym: "ovary primary follicle" EXACT [MA:0002907] synonym: "preantral follicle of ovary" EXACT [] synonym: "primary egg follicle" RELATED [] synonym: "primary follicle of ovary" EXACT [FMA:18634] xref: BTO:0000410 xref: EMAPA:19284 xref: FMA:18634 xref: MA:0002907 xref: SCTID:258665002 is_a: UBERON:0001305 ! ovarian follicle [Term] id: UBERON:0000036 name: secondary ovarian follicle synonym: "antral follice" EXACT [GO:0001547] synonym: "antral follicle of ovary" EXACT [] synonym: "antral ovarian follice" EXACT [GO:0001547] synonym: "folliculus ovaricus secondarius" EXACT [] synonym: "ovary antral follicle" EXACT [MA:0002909] synonym: "ovary secondary follicle" EXACT [MA:0002908] synonym: "secondary egg follicle" RELATED [] synonym: "secondary follicle of ovary" EXACT [] xref: EMAPA:29862 xref: FMA:18637 xref: MA:0002908 xref: MA:0002909 is_a: UBERON:0001305 ! ovarian follicle relationship: develops_from UBERON:0000035 ! primary ovarian follicle [Term] id: UBERON:0000037 name: tertiary ovarian follicle def: "Ovarian follicle is the basic unit of female reproductive biology and is composed of roughly spherical aggregations of cells found in the ovary. They contain a single oocyte (aka ovum or egg). These structures are periodically initiated to grow and develop, culminating in ovulation of usually a single competent oocyte. These eggs/ova are only developed once every menstrual cycle (i. e, once a month). [WP,unvetted]." [Wikipedia:Graafian_follicle] subset: uberon_slim synonym: "folliculi ovarici vesiculosi" EXACT [FMA:18641, FMA:TA] synonym: "folliculus ovaricus tertiarius" EXACT [] synonym: "folliculus ovaricus tertiarius (vesiculosus)" EXACT [FMA:18641] synonym: "folliculus ovaricus tertiarius (vesiculous)" EXACT [] synonym: "Graafian follicle" EXACT [] synonym: "tertiary egg follicle" RELATED [] synonym: "tertiary follicle of ovary" EXACT [FMA:18641] synonym: "vesicular follicle of ovary" EXACT [FMA:18641] synonym: "vesicular ovarian follicle" EXACT [FMA:18641] xref: EMAPA:30763 xref: FMA:18641 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Primary_follicle-4.JPG/200px-Primary_follicle-4.JPG xref: ncithesaurus:Graafian_Follicle xref: SCTID:362261008 is_a: UBERON:0001305 ! ovarian follicle relationship: develops_from UBERON:0000036 ! secondary ovarian follicle [Term] id: UBERON:0000038 name: follicular fluid def: "The fluid surrounding the OVUM and GRANULOSA CELLS in the Graafian follicle ( OVARIAN FOLLICLE). The follicular fluid contains sex steroids, glycoprotein hormones, plasma proteins, mucopolysaccharides, and enzymes." [MESH:D015571, Wikipedia:Follicular_fluid] comment: Follicular fluid is a liquid which fills the follicular antrum and surrounds the ovum in an ovarian follicle. This fluid is rich in hyaluronic acid. subset: uberon_slim synonym: "antral fluid, ovarian follicle" RELATED [] synonym: "liquor follicularis" EXACT [FMA:18665] synonym: "liquor folliculi" EXACT [] synonym: "ovarian follicular fluid" RELATED [BTO:0004383] synonym: "ovary follicle fluid" EXACT [MA:0002511] synonym: "ovary follicular fluid" RELATED [BTO:0004383] xref: BTO:0004383 xref: FMA:18665 xref: GAID:372 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Gray3.png/200px-Gray3.png xref: MA:0002511 xref: MESH:A.05.360.319.114.630.535.150 xref: ncithesaurus:Ovarian_Follicle_Fluid is_a: UBERON:0000463 ! portion of organism substance relationship: part_of UBERON:0001305 ! ovarian follicle relationship: surrounded_by UBERON:0000039 ! follicular antrum [Term] id: UBERON:0000039 name: follicular antrum def: "Region of ovarian follicle filled with follicular fluid." [http://en.wikipedia.org/wiki/Follicular_antrum, Wikipedia:Follicular_antrum] subset: uberon_slim synonym: "antral cavity" EXACT [FMA:18675] synonym: "antrum folliculare" EXACT [FMA:18675] xref: FMA:18675 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0001305 ! ovarian follicle [Term] id: UBERON:0000040 name: Leydig's organ def: "Along with the spleen and special tissue around the gonads, this structure produces red blood cells and it is nestled along the top and bottom of the esophagus. Found in elasmobranchs (sharks and rays) but with some exceptions. Leydig's organ can be quite large - a 1.6-kilogram (3.5-pound) one was reported from a 1.8-metre (6-foot) long Bluntnose Sixgill Shark (Hexanchus griseus)" [http://www.elasmo-research.org/education/topics/p_blood_cells.htm, Wikipedia:Leydig's_organ] subset: organ_slim subset: uberon_slim is_a: UBERON:0003103 ! compound organ [Term] id: UBERON:0000041 name: dermal denticle def: "Multi-tissue structure composed of enameloid, dentine surrounding a pulp cavity, and bone of attachment anchoring the element into the dermis[VAO]. small outgrowths which cover the skin of many cartilaginous fish including sharks. They are similar in structure to teeth, and teeth may have evolved from denticle-like structures in primitive fish.[citation needed] The placoid scales in sharks are formed of dentine with dermal papillae located in the core. These scales develop from the dermal layer of the skin, which is in contrast to the epidermal development seen the in the elasmoid scales of tetrapods. The shape of denticle varies from species to species and can be used in identification. Studies have found that the denticles create tiny vortices that reduce drag to make swimming more efficient. Denticles also allow sharks to swim silently compared to other fish that generate considerable noise when they ply the water[WP]." [VAO:0000079, Wikipedia:Dermal_denticle] comment: TODO check dentin def // Scales and teeth of sharks are examples of dermal skeletal elements that are still composed of the three ancient components-enamel, dentine, and bone. subset: uberon_slim synonym: "placoid scale" EXACT [] xref: VAO:0000079 is_a: UBERON:0004756 ! dermal skeletal element relationship: has_part UBERON:0001751 ! dentine [Term] id: UBERON:0000042 name: serous membrane def: "a smooth membrane consisting of a thin layer of cells which excrete serous fluid. Serous membranes line and enclose several body cavities, known as serous cavities, where they secrete a lubricating fluid which reduces friction from muscle movement. Serosa is not to be confused with adventitia, a connective tissue layer which binds together structures rather than reducing friction between them. Each serous membrane is composed of a secretory epithelial layer and a connective tissue layer underneath. The epithelial layer, known as mesothelium, consists of a single layer of avascular flat nucleated cells (cuboidal epithelium) which produce the lubricating serous fluid. This fluid has a consistency similar to thin mucus. These cells are bound tightly to the underlying connective tissue. The connective tissue layer provides the blood vessels and nerves for the overlying secretory cells, and also serves as the binding layer which allows the whole serous membrane to adhere to organs and other structures.[WP]." [Wikipedia:Serosa, Wikipedia:Serous_membrane] comment: TODO - add generic membrane parent? TODO - split into serosa and serous membrane? subset: uberon_slim subset: vertebrate_core synonym: "serosa" EXACT [] synonym: "tunica serosa" EXACT [FMA:9581] synonym: "wall of serous sac" EXACT [FMA:9581] xref: FMA:45637 xref: FMA:9581 xref: GAID:19 xref: http://upload.wikimedia.org/wikipedia/en/thumb/4/4e/Ens.png/200px-Ens.png xref: MESH:A.10.615.789 xref: ncithesaurus:Serosa xref: SCTID:362878009 xref: ZFA:0005425 is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004457 ! cavity lining relationship: develops_from UBERON:0000926 {source="Wikipedia"} ! mesoderm relationship: has_part UBERON:0001136 ! mesothelium relationship: has_part UBERON:0002384 ! connective tissue [Term] id: UBERON:0000043 name: tendon def: "A fibrous, strong, connective tissue that connects muscle to bone or integument and is capable of withstanding tension. Tendons are similar to ligaments except that ligaments join one bone to another. Tendons and muscles work together and can only exert a pulling force." [BTO:0000421, http://en.wikipedia.org/wiki/Tendon, OMD:connective+tissue, OMD:tendon, Wikipedia:Tendon] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "sinew" RELATED [Wikipedia:Tendon] xref: AEO:0000091 xref: BTO:0001356 xref: EFO:0000952 xref: EHDAA2:0003091 xref: EMAPA:25053 xref: EV:0100149 xref: FMA:9721 xref: GAID:276 xref: galen:Tendon xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3c/Achilles-tendon.jpg/200px-Achilles-tendon.jpg xref: MA:0000115 xref: MESH:A.02.880 xref: ncithesaurus:Tendon xref: OG:0001286 xref: OpenCyc:Mx4rvVjefJwpEbGdrcN5Y29ycA xref: SCTID:256667004 xref: VAO:0000073 xref: XAO:0000173 is_a: UBERON:0002384 {source="MA"} ! connective tissue is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: attached_to UBERON:0002385 ! muscle tissue relationship: part_of UBERON:0002204 {source="OG"} ! musculoskeletal system [Term] id: UBERON:0000044 name: dorsal root ganglion def: "ganglion on the dorsal root of each spinal nerve that is one of a series of ganglia lodging cell bodies of sensory neurons[BTO]. Trunk ganglion which is located adjacent to the spine on a dorsal root and contains the cell bodies of afferent sensory nerves[..]. one on the posterior root of each spinal nerve, composed of unipolar nerve cell bodies of the sensory neurons of the nerve[TFD]." [Wikipedia:Dorsal_root_ganglion] comment: FMA treats dorsal root ganglion and spinal ganglion as equivalent labels. MA is the only ontology to introduce two classes here (also EHDAA2) subset: uberon_slim subset: vertebrate_core synonym: "dorsal root ganglia" RELATED PLURAL [] synonym: "dorsal root ganglion" EXACT [BTO:0001264] synonym: "DRG" RELATED [] synonym: "ganglion of dorsal root" EXACT [OBOL:automatic] synonym: "ganglion sensorium nervi spinalis" RELATED [BTO:0001264] synonym: "ganglion spinale" RELATED [BTO:0001264] synonym: "ganglion spinalis" EXACT [FMA:5888] synonym: "spinal ganglion" EXACT [FMA:5888] xref: AAO:0011032 xref: BTO:0001264 xref: EFO:0000900 xref: EHDAA:2899 xref: EHDAA2:0000418 xref: EHDAA2:0001897 xref: EMAPA:16668 xref: EMAPA:18372 xref: EV:0100373 xref: FMA:5888 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/71/DRG_Chicken_e7.jpg/200px-DRG_Chicken_e7.jpg xref: MA:0000231 xref: MA:0000232 xref: MAT:0000162 xref: MIAA:0000162 xref: ncithesaurus:Dorsal_Root_Ganglion xref: NIF_GrossAnatomy:birnlex_2596 xref: OG:0000222 xref: SCTID:244455004 xref: TAO:0000200 xref: XAO:0000210 xref: ZFA:0000200 is_a: UBERON:0001800 {source="MA"} ! sensory ganglion is_a: UBERON:0003338 ! implied link automatically realized ! ganglion of peripheral nervous system relationship: part_of UBERON:0002261 intersection_of: UBERON:0000045 ! ganglion intersection_of: part_of UBERON:0002261 ! dorsal root of spinal cord relationship: develops_from UBERON:0003083 ! trunk neural crest relationship: part_of UBERON:0002261 ! dorsal root of spinal cord [Term] id: UBERON:0000045 name: ganglion alt_id: UBERON:FBbt_00005137-FMA_5884-FMA_5888-MA_0000232-MA_0002406-MIAA_0000162-MIAA_0000207-MIAA_0000343-WBbt_0005189-XAO_0000209-XAO_0000210-ZFA_0000190-ZFA_0000200 def: "A biological tissue mass, most commonly a mass of nerve cell bodies." [Wikipedia:Ganglion] comment: TODO - check vert vs invert. Other species: Any of a number of aggregations of neurons, glial cells and their processes, surrounded by a glial cell and connective tissue sheath (plural: ganglia). // Subdivision of neural tree (organ) which primarily consists of cell bodies of neurons located outside the neuraxis (brain and spinal cord); together with a nucleus and its associated nerve, it constitutes a neural tree (organ). Examples: spinal ganglion, trigeminal ganglion, superior cervical ganglion, celiac ganglion, inferior hypogastric (pelvic) ganglion. // a cluster of nerve cells and associated glial cells (nuclear location) // Portion of tissue that contains cell bodies of neurons and is located outside the central nervous system. // Structures containing a collection of nerve cell bodies. (Source: BioGlossary, www.Biology-Text.com). subset: uberon_slim subset: vertebrate_core synonym: "ganglia" RELATED [] synonym: "neural ganglion" RELATED [BTO:0000497] xref: AAO:0010426 xref: AEO:0000135 xref: BTO:0000497 xref: EFO:0000899 xref: EHDAA:2897 xref: EHDAA:4662 xref: EHDAA:5621 xref: EHDAA:918 xref: EHDAA2:0003135 xref: EV:0100372 xref: FBbt:00005137 xref: FMA:5884 xref: MA:0002406 xref: MAT:0000207 xref: MAT:0000343 xref: MESH:A.08.340 xref: MIAA:0000207 xref: MIAA:0000343 xref: ncithesaurus:Ganglion xref: NIF_GrossAnatomy:nlx_anat_100302 xref: OG:0000156 xref: TAO:0000190 xref: TGMA:0001016 xref: WBbt:0005189 xref: XAO:0000209 xref: ZFA:0000190 is_a: UBERON:0000479 ! tissue is_a: UBERON:0003714 {source="EHDAA2"} ! neural tissue relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0000046 name: stemma def: "eye-spots which may be set into a pit to reduce the angles of light that enters and affects the eyespot, to allow the organism to deduce the angle of incoming light" [Wikipedia:Eye#Pit_eyes, Wikipedia:Stemma] subset: uberon_slim synonym: "pit eye" EXACT [Wikipedia:Eye#Pit_eyes] is_a: UBERON:0000047 ! simple eye [Term] id: UBERON:0000047 name: simple eye def: "An eye with one concave chamber. Note that 'simple' does not imply a reduced level of complexity or acuity." [Wikipedia:Eye#Simple_eyes] subset: grouping_class subset: uberon_slim xref: TGMA:0000729 is_a: UBERON:0000970 ! eye [Term] id: UBERON:0000048 name: pinhole eye def: "Simple eye that has a small aperture (which may be adjustable) and deep pit. It is only found in the nautiloids." [DOI:10.1146/annurev.ne.15.030192.000245, Wikipedia:Pinhole_eye] subset: grouping_class subset: uberon_slim is_a: UBERON:0000047 ! simple eye [Term] id: UBERON:0000049 name: spherical lensed eye def: "simple eye that consists of a lens of one refractive index" [Wikipepedia:Eye#Spherical_lensed_eye] subset: grouping_class is_a: UBERON:0000047 ! simple eye [Term] id: UBERON:0000050 name: simple eye with multiple lenses def: "simple eye that has two or more lenses. Some marine organisms bear more than one lens; for instance the copeopod Pontella has three. The outer has a parabolic surface, countering the effects of spherical aberration while allowing a sharp image to be formed. Copilla's eyes have two lenses, which move in and out like a telescope" [Wikipedia:Eye#Multiple_lenses] subset: grouping_class subset: uberon_slim is_a: UBERON:0000047 ! simple eye relationship: has_part UBERON:0000965 ! lens [Term] id: UBERON:0000051 name: fornix of vagina def: "There are three named fornices: The posterior fornix is the larger recess, behind the cervix. It is close to the rectouterine pouch. There are two smaller recesses in front and at the sides: the anterior fornix is close to the vesicouterine pouch. the lateral fornix. Some women receive enjoyment from stimulation of the fornices, while other women say that their fornices cannot be stimulated without stimulation of the cervix, which may be painful. The fornices appear to be close to at least two erogenous zones, the AFE zone, which is near the anterior fornix, and the cul-de-sac, which is near the posterior fornix. [WP,unvetted]." [Wikipedia:Fornix_vaginae] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "fornix" BROAD [] synonym: "fornix vaginae" EXACT [FMA:19985, FMA:TA] synonym: "vaginal fornix" EXACT [] xref: FMA:19985 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Female_anatomy.png/200px-Female_anatomy.png xref: ncithesaurus:Vaginal_Fornix xref: SCTID:245475003 is_a: UBERON:0002553 ! anatomical cavity disjoint_from: UBERON:0000052 ! fornix of brain relationship: part_of UBERON:0000996 ! vagina [Term] id: UBERON:0000052 name: fornix of brain def: "The fornix (Latin, 'vault' or 'arch') is a C-shaped bundle of fibres in the brain, and carries signals from the hippocampus to the mammillary bodies and septal nuclei. [WP,unvetted]." [Wikipedia:Fornix_of_brain] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "brain fornix" EXACT [] synonym: "fornix" BROAD [] synonym: "fornix of neuraxis" EXACT [FMA:83865] synonym: "neuraxis fornix" EXACT [FMA:83865] xref: FMA:83865 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/21/Gray747.png/200px-Gray747.png xref: MA:0002747 xref: NIF_GrossAnatomy:birnlex_705 is_a: UBERON:0002437 ! cerebral white matter [Term] id: UBERON:0000053 name: macula lutea def: "Oval yellow spot near the center of the retina of the human eye. It has a diameter of around 5 mm and is often histologically defined as having two or more layers of ganglion cells. Near its center is the fovea, a small pit that contains the largest concentration of cone cells in the eye and is responsible for central vision, and also contains the parafovea and perifovea[WP]. It is devoid of retinal blood vessels, except in its periphery, and receives nourishment from the choriocapillaris of the choroid. (From Cline et al., Dictionary of Visual Science, 4th ed)" [MESH:A.09.371.729.522, Wikipedia:Macula_lutea] subset: uberon_slim synonym: "macula" RELATED [] synonym: "macula flava retinae" RELATED [BTO:0003015] synonym: "macula retinae" RELATED [BTO:0003015] synonym: "maculae" RELATED [] xref: BTO:0003015 xref: EV:0100349 xref: FMA:58637 xref: GAID:909 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ed/Human_eye_cross-sectional_view_grayscale.png/200px-Human_eye_cross-sectional_view_grayscale.png xref: MA:0001306 xref: MESH:A.09.371.729.522 xref: ncithesaurus:Macula xref: NIF_GrossAnatomy:birnlex_2540 xref: SCTID:362517001 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure disjoint_from: UBERON:0000054 ! macula relationship: part_of UBERON:0000966 ! retina [Term] id: UBERON:0000054 name: macula def: "Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own charcteristic shape and polarity pattern." [:Macula_of_saccule, ZFIN:curator] subset: uberon_slim synonym: "macula" EXACT [] synonym: "maculae" EXACT PLURAL [] synonym: "sensory macula" EXACT [ZFA:0000386] synonym: "sensory patch" EXACT [ZFA:0000386] xref: GAID:777 xref: TAO:0000386 xref: ZFA:0000386 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0001846 ! internal ear [Term] id: UBERON:0000055 name: vessel def: "A tubular structure that contains, conveys body fluid, such as blood or lymph." [UBERON:cjm] comment: compare with UBERON:0008782 subset: grouping_class is_a: UBERON:0004111 ! anatomical conduit [Term] id: UBERON:0000056 name: ureter def: "The ureteric bud is an epithelial tube that grows out from the metanephric duct. The bud elongates and branches to give rise to the ureter and kidney collecting tubules.[GO]. Muscular duct that propels urine from the kidneys to the urinary bladder, or related organs. In humans, organ with organ cavity which connects the renal sinus to the urinary bladder. Examples: There are only two ureters, the right and the left ureters." [GO:0090189, Wikipedia:Ureter] subset: major_organ subset: organ_slim subset: uberon_slim synonym: "metanephric duct" RELATED [ISBN10:0073040584, OG:0000605] xref: AAO:0010254 xref: BTO:0001409 xref: EFO:0000930 xref: EHDAA:9341 xref: EHDAA2:0002139 xref: EMAPA:17950 xref: EV:0100097 xref: FMA:9704 xref: GAID:438 xref: galen:Ureter xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Urinary_system.svg/200px-Urinary_system.svg.png xref: MA:0000378 xref: MAT:0000120 xref: MESH:A.05.810.776 xref: MIAA:0000120 xref: ncithesaurus:Ureter xref: OG:0000605 xref: OpenCyc:Mx4rvhmm6JwpEbGdrcN5Y29ycA xref: SCTID:302511008 xref: XAO:0000144 is_a: UBERON:0000025 ! tube is_a: UBERON:0000062 ! organ is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0005179 ! implied link automatically realized ! pelvis organ is_a: UBERON:0006555 ! implied link automatically realized ! excretory tube relationship: continuous_with UBERON:0001224 ! renal pelvis relationship: continuous_with UBERON:0001255 ! urinary bladder relationship: develops_from UBERON:0005081 {source="GO"} ! ureter ureteric bud relationship: part_of UBERON:0001008 ! excretory system relationship: part_of UBERON:0002355 {xref="MA:0000378"} ! pelvis [Term] id: UBERON:0000057 name: urethra def: "A tube which connects the urinary bladder to the outside of the body. In males, the urethra travels through the penis, and carries semen as well as urine. In females, the urethra is shorter and emerges above the vaginal opening. The external urethral sphincter is a striated muscle that allows voluntary control over urination." [Wikipedia:Urethra] comment: This class was created automatically from a combination of ontologies subset: major_organ subset: organ_slim subset: uberon_slim xref: BTO:0001426 xref: EFO:0000931 xref: EMAPA:30901 xref: EV:0100099 xref: FMA:19667 xref: GAID:390 xref: galen:Urethra xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Female_anatomy.png/200px-Female_anatomy.png xref: MA:0000379 xref: MAT:0000121 xref: MESH:A.05.360.444.492.726 xref: MIAA:0000121 xref: ncithesaurus:Urethra xref: OG:0001264 xref: OpenCyc:Mx4rvVjkypwpEbGdrcN5Y29ycA xref: SCTID:302513006 xref: XAO:0000153 is_a: UBERON:0000062 ! organ is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: continuous_with UBERON:0001255 ! urinary bladder relationship: develops_from UBERON:0000164 {source="Wikipedia"} ! primitive urogenital sinus relationship: part_of UBERON:0001556 ! lower urinary tract [Term] id: UBERON:0000058 name: duct def: "A tube shaped portion of tissue lined with epithelial cells that collects secretions and routes them to their destination[ZFA]." [Wikipedia:Duct_(anatomy), ZFA:0005171] comment: TODO - make distinctions between duct and tube clearer. Single layer of cells vs multiples? Function (e.g. exocrine gland duct?). Different ontologies use it in different ways subset: vertebrate_core synonym: "anatomical duct" EXACT [] synonym: "exocrine duct" RELATED [] synonym: "exocrine gland duct" RELATED [] xref: FMA:30320 xref: galen:Duct xref: ncithesaurus:Duct xref: XAO:0004000 xref: ZFA:0005171 is_a: UBERON:0004111 ! anatomical conduit [Term] id: UBERON:0000059 name: large intestine def: "The large intestine consists of the cecum and colon[WP]. Organ with organ cavity which is continuous proximally with the small intestine and distally with the anal canal.[FMA]." [FMA:7201, Wikipedia:Large_intestine_(anatomy)] subset: major_organ subset: organ_slim synonym: "intestinum crassum" RELATED [BTO:0000706] xref: AAO:0010396 xref: BTO:0000706 xref: EFO:0000840 xref: EMAPA:19252 xref: EV:0100077 xref: FMA:7201 xref: GAID:306 xref: galen:LargeIntestine xref: MA:0000333 xref: MESH:A.03.492.411.495 xref: MIAA:0000046 xref: ncithesaurus:Large_Intestine xref: OG:0000054 xref: OpenCyc:Mx4rvVkF5pwpEbGdrcN5Y29ycA xref: SCTID:181254001 xref: XAO:0000131 is_a: UBERON:0000062 ! organ is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: part_of UBERON:0000160 ! intestine [Term] id: UBERON:0000060 name: anatomical wall alt_id: UBERON:0009915 def: "Anatomical organ component enclosing an organ cavity." [FMA:82482] comment: merged FMA organ wall in to this class synonym: "wall" EXACT [] synonym: "wall of organ" EXACT [FMA:82482] xref: EMAPA:25036 xref: FMA:82482 xref: galen:Wall xref: ncithesaurus:Wall is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0000061 name: anatomical structure alt_id: UBERON:CARO_0000003-CARO_0000024-FBbt_00000001-FBbt_00007001-FMA_67135-FMA_67498-WBbt_0003760-WBbt_0007833-XAO_0003000-XAO_0003041-ZFA_0000037-ZFA_0000496-ZFA_0001094 def: "Material anatomical entity that has inherent 3D shape and is generated by coordinated expression of the organism's own genome." [CARO:0000003] subset: upper_level synonym: "biological structure" EXACT [] xref: AAO:0010825 xref: AEO:0000003 xref: BILA:0000003 xref: CARO:0000003 xref: EHDAA2:0003003 xref: FBbt:00007001 xref: FMA:67135 xref: GAID:781 xref: HAO:0000003 xref: MA:0003000 xref: MESH:A.13 xref: SCTID:362889002 xref: TAO:0000037 xref: TGMA:0001823 xref: XAO:0003000 xref: ZFA:0000037 is_a: UBERON:0000465 ! material anatomical entity [Term] id: UBERON:0000062 name: organ def: "Anatomical structure that performs a specific function or group of functions [WP]. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions[GO]." [Wikipedia:Organ_(anatomy)] comment: note that CARO does not include a generic 'organ' class, only simple and compound organ xref: BILA:0000053 xref: EFO:0000634 xref: FMA:67498 xref: MA:0003001 xref: ncithesaurus:Organ xref: NIF_GrossAnatomy:birnlex_4 xref: OpenCyc:Mx4rv5XMb5wpEbGdrcN5Y29ycA xref: OpenCyc:Mx4rwP3iWpwpEbGdrcN5Y29ycA is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0000467 ! anatomical system [Term] id: UBERON:0000063 name: organ segment def: "Organ region with one or more fixed or anchored fiat boundaries. Examples: artery, trunk of nerve, cervical part of esophagus, pelvic part of vagina, horn of thyroid cartilage, anterior segment of eyeball[FMA]." [FMA:86140] synonym: "organ region with fixed fiat boundary" EXACT [FMA:86140] synonym: "segment of organ" EXACT [FMA:86140] xref: FMA:86140 is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0000064 name: organ part def: "anatomical structure which has as its direct parts two or more types of tissue and is continuous with one or more anatomical structures likewise constituted by two or more portions of tissues distinct from those of their complement. Examples: osteon, cortical bone, neck of femur, bronchopulmonary segment, left lobe of liver, anterior right side of heart, interventricular branch of left coronary artery, right atrium, mitral valve, head of pancreas[FMA]." [FMA:82472] subset: disjointness_axiom_removed subset: upper_level synonym: "cardinal organ part" EXACT [] xref: EFO:0000635 xref: FMA:82472 xref: SCTID:91717005 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0000062 ! organ [Term] id: UBERON:0000065 name: respiratory tract def: "anatomical structure that is part of the respiratory system. In mammals consists of upper and lower tracts" [UBERON:cjm] xref: EHDAA:1568 xref: EHDAA:2219 xref: EHDAA2:0001606 xref: EMAPA:16737 xref: MESH:A.04 xref: OG:0000393 xref: OpenCyc:Mx4rvvM--pwpEbGdrcN5Y29ycA xref: SCTID:361110005 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: develops_from UBERON:0000925 ! endoderm relationship: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0000066 name: fully formed stage def: "The stage of development at which the animal is fully formed, including immaturity and maturity. Includes both juvenile stage, and adult stage. " [UBERON:cjm] synonym: "adult stage" BROAD [] synonym: "fully formed animal stage" EXACT [] synonym: "juvenile-adult stage" EXACT [] xref: BTO:0001043 xref: FBdv:00005369 xref: WBls:0000041 is_a: UBERON:0000092 ! post-embryonic stage relationship: preceded_by UBERON:0000111 ! organogenesis stage [Term] id: UBERON:0000067 name: embryo stage part def: "A stage that is part of the embryo stage." [UBERON:cjm] synonym: "embryonic stage part" EXACT [] is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000068 intersection_of: UBERON:0000105 ! life cycle stage intersection_of: part_of UBERON:0000068 ! embryo stage relationship: part_of UBERON:0000068 ! embryo stage [Term] id: UBERON:0000068 name: embryo stage def: "A life cycle stage that starts with fertilization and ends with the fully formed embryo." [] synonym: "embryogenesis" RELATED [] synonym: "embryonic stage" EXACT [] xref: EV:0300001 xref: FBdv:00005289 xref: OGES:000000 xref: OGES:000022 xref: SCTID:296280003 xref: XAO:1000012 is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000104 ! life cycle [Term] id: UBERON:0000069 name: larval stage def: "a distinct juvenile stage many animals undergo before metamorphosis into adults. Animals with indirect development such as insects, amphibians, or cnidarians typically have a larval phase of their life cycle." [Wikipedia:Larva] comment: It is a misunderstanding that the larval form always reflects the group's evolutionary history. It could be the case, but often the larval stage has evolved secondarily, as in insects. In these cases the larval form might differ more from the group's common origin than the adult form[WP]. Uberon includes clade-specific subclasses. synonym: "ammocoete" NARROW SENSU [Wikipedia:Larva] synonym: "ammocoete stage" NARROW SENSU [Wikipedia:Larva] synonym: "bipinnaria" NARROW SENSU [Wikipedia:Larva] synonym: "bipinnaria stage" NARROW SENSU [Wikipedia:Larva] synonym: "caterpillar" NARROW SENSU [Wikipedia:Larva] synonym: "caterpillar stage" NARROW SENSU [Wikipedia:Larva] synonym: "glochidium" NARROW SENSU [Wikipedia:Larva] synonym: "glochidium stage" NARROW SENSU [Wikipedia:Larva] synonym: "grub" NARROW SENSU [Wikipedia:Larva] synonym: "grub stage" NARROW SENSU [Wikipedia:Larva] synonym: "larva" RELATED [] synonym: "larva stage" EXACT [] synonym: "leptocephalus" NARROW SENSU [Wikipedia:Larva] synonym: "leptocephalus stage" NARROW SENSU [Wikipedia:Larva] synonym: "maggot" NARROW SENSU [Wikipedia:Larva] synonym: "maggot stage" NARROW SENSU [Wikipedia:Larva] synonym: "naiad, nymph" NARROW SENSU [Wikipedia:Larva] synonym: "naiad, nymph stage" NARROW SENSU [Wikipedia:Larva] synonym: "nauplius" NARROW SENSU [Wikipedia:Larva] synonym: "nauplius stage" NARROW SENSU [Wikipedia:Larva] synonym: "nymph" NARROW SENSU [Wikipedia:Larva] synonym: "nymph stage" NARROW SENSU [Wikipedia:Larva] synonym: "planula" NARROW SENSU [Wikipedia:Larva] synonym: "planula stage" NARROW SENSU [Wikipedia:Larva] synonym: "trochophore" NARROW SENSU [Wikipedia:Larva] synonym: "trochophore stage" NARROW SENSU [Wikipedia:Larva] synonym: "veliger" NARROW SENSU [Wikipedia:Larva] synonym: "veliger stage" NARROW SENSU [Wikipedia:Larva] synonym: "wriggler" NARROW SENSU [Wikipedia:Larva] synonym: "wriggler stage" NARROW SENSU [Wikipedia:Larva] synonym: "zoea" NARROW SENSU [Wikipedia:Larva] synonym: "zoea stage" NARROW SENSU [Wikipedia:Larva] xref: AEO:0000126 xref: BTO:0000915 xref: BTO:0000954 xref: EFO:0001303 xref: OGES:000008 is_a: UBERON:0000092 ! post-embryonic stage relationship: directly_preceded_by UBERON:0000068 ! embryo stage [Term] id: UBERON:0000070 name: pupal stage def: "A life stage of some insects undergoing transformation. The pupal stage is found only in holometabolous insects, those that undergo a complete metamorphosis, going through four life stages; embryo, larva, pupa and imago." [Wikipedia:Pupa] synonym: "pupa stage" EXACT [] xref: FBdv:00005349 is_a: UBERON:0000092 ! post-embryonic stage relationship: directly_preceded_by UBERON:0000069 ! larval stage [Term] id: UBERON:0000071 name: death stage def: "End of the life of an organism." [XAO:0000437] synonym: "death" EXACT [] xref: ncithesaurus:Death xref: XAO:0000437 is_a: UBERON:0000105 ! life cycle stage relationship: finishes UBERON:0000104 ! life cycle relationship: part_of UBERON:0000104 ! life cycle [Term] id: UBERON:0000072 name: segment of respiratory tract def: "An organ segment that is part of a respiratory tract [Obol]." [OBOL:automatic] comment: Note that MA:0000434 has subclasses upper and lower, so it corresponds to a segment of the tract, rather than the tract as a whole synonym: "respiratory tract" RELATED [MA:0000434] xref: MA:0000434 is_a: UBERON:0000063 ! implied link automatically realized ! organ segment is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: part_of UBERON:0000065 intersection_of: UBERON:0000063 ! organ segment intersection_of: part_of UBERON:0000065 ! respiratory tract [Term] id: UBERON:0000073 name: regional part of nervous system def: "An anatomical structure that is part of a nervous system [Obol]." [OBOL:automatic] comment: grouping class synonym: "part of nervous system" EXACT [NIF_GrossAnatomy:birnlex_1157] xref: ncithesaurus:Nervous_System_Part xref: NIF_GrossAnatomy:birnlex_1157 xref: SCTID:25087005 is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001016 intersection_of: UBERON:0000061 ! anatomical structure intersection_of: part_of UBERON:0001016 ! nervous system created_by: Melissa Haendel creation_date: 2009-06-18T09:00:04Z [Term] id: UBERON:0000074 name: renal glomerulus def: "A capillary tuft which forms a close network with the visceral epithelium (podocytes) and the mesangium to form the filtration barrier and is surrounded by Bowman's capsule in nephrons of the vertebrate kidney[GO]." [MP:0005325, Wikipedia:Glomerulus] comment: ZFA - The multi-tissue structure where the glomerular basement membrane supported by mesonephric podocytes filters blood from the glomerular capillaries. TODO - split glomerulus and glomerular tuft? DONE. GUDMAP: 'Together, the Bowman’s capsule and the glomerulus comprise the definitive renal corpuscle.' - here the glomerulus is part of the capsule? subset: vertebrate_core synonym: "glomerular capillary tuft" RELATED [ZFA:0001288] synonym: "glomerular tuft" RELATED [] synonym: "glomerulus" BROAD [] synonym: "malphigian glomerulus" RELATED [BTO:0000530] synonym: "renal corpuscle" RELATED [] xref: AAO:0010388 xref: BTO:0000530 xref: EFO:0003667 xref: EV:0100386 xref: FMA:15624 xref: http://upload.wikimedia.org/wikipedia/commons/2/22/Renal_corpuscle.svg xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray1130.svg/200px-Gray1130.svg.png xref: MA:0001657 xref: MESH:A.05.810.453.736.520 xref: ncithesaurus:Glomerulus xref: XAO:0000146 xref: ZFA:0001288 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: develops_from UBERON:0003220 {source="Wikipedia"} ! metanephric mesenchyme relationship: develops_from UBERON:0005749 ! glomerular tuft relationship: part_of UBERON:0001229 ! renal corpuscle relationship: surrounded_by UBERON:0001230 ! glomerular capsule created_by: Melissa Haendel creation_date: 2009-06-18T09:26:37Z [Term] id: UBERON:0000075 name: subdivision of skeletal system comment: note we consciously merge the two FMA classes below synonym: "skeletal system part" RELATED [] synonym: "skeletal system subdivision" EXACT [FMA:85544] synonym: "skeleton part" RELATED [] synonym: "subdivision of skeleton" RELATED [] synonym: "subdivision of skeleton (in vivo)" EXACT [FMA:23879] xref: FMA:23879 xref: FMA:85544 xref: galen:ComplexSkeletalStructure xref: ncithesaurus:Skeletal_System_Part xref: SCTID:118966000 is_a: UBERON:0000480 ! anatomical group is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001434 ! skeletal system created_by: cjm creation_date: 2009-07-30T03:53:53Z [Term] id: UBERON:0000076 name: external ectoderm def: "The surface ectoderm (or external ectoderm forms the following structures: Skin Epithelium of the mouth and nasal cavity saliavary glands, and glands of mouth and nasal cavity Enamel - as a side note dentin and dental pulp are formed from ectomesenchyme which is derived from ectoderm Epithelium of pineal and pituitary glands Lens and cornea of the eye Apical ectodermal ridge inducing development of the limb buds of the embryo. Sensory receptors in epidermis [WP,unvetted]." [Wikipedia:External_ectoderm] comment: In vertebrates, the ectoderm has three parts: external ectoderm (also known as surface ectoderm), the neurectoderm (neural crest, and neural tube). synonym: "surface ectoderm" EXACT [] xref: EHDAA:1494 xref: EHDAA:350 xref: EHDAA:4784 xref: EHDAA:4790 xref: EHDAA:4796 xref: EHDAA:7860 xref: EHDAA2:0001968 xref: EMAPA:16096 xref: EMAPA:16539 xref: FMA:87656 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1d/Ectoderm.png/200px-Ectoderm.png xref: ncithesaurus:Surface_Ectoderm is_a: UBERON:0000923 ! germ layer relationship: part_of UBERON:0000924 ! ectoderm [Term] id: UBERON:0000077 name: mixed endoderm/mesoderm-derived structure def: "An anatomical structure that develops from the endoderm and the mesoderm." [UBERON:cjm] comment: Grouping term for query purposes. subset: grouping_class is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: develops_from UBERON:0000925 relationship: develops_from UBERON:0000926 intersection_of: UBERON:0000061 ! anatomical structure intersection_of: develops_from UBERON:0000925 ! endoderm intersection_of: develops_from UBERON:0000926 ! mesoderm [Term] id: UBERON:0000078 name: mixed ectoderm/mesoderm/endoderm-derived structure def: "An anatomical structure that develops from the ectoderm, mesoderm and endoderm." [UBERON:cjm] comment: Grouping term for query purposes subset: grouping_class is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: develops_from UBERON:0000924 relationship: develops_from UBERON:0000925 relationship: develops_from UBERON:0000926 intersection_of: UBERON:0000061 ! anatomical structure intersection_of: develops_from UBERON:0000924 ! ectoderm intersection_of: develops_from UBERON:0000925 ! endoderm intersection_of: develops_from UBERON:0000926 ! mesoderm [Term] id: UBERON:0000079 name: male reproductive system def: "the organs associated with producing offspring in the gender that produces spermatozoa." [MP:0001145] synonym: "genitalia of male organism" EXACT [OBOL:automatic] synonym: "male genital organ" RELATED [BTO:0000082] synonym: "male genital system" EXACT [FMA:45664] synonym: "male genitalia" EXACT [] synonym: "male genitals" EXACT [] synonym: "male organism genitalia" EXACT [OBOL:automatic] synonym: "male organism reproductive system" EXACT [OBOL:automatic] synonym: "male reproductive tract" RELATED [MA:0000396] synonym: "reproductive system of male organism" EXACT [OBOL:automatic] synonym: "systema genitale masculinum" RELATED [BTO:0000082] xref: BTO:0000082 xref: EFO:0000970 xref: EHDAA:8136 xref: EHDAA2:0001054 xref: EMAPA:17968 xref: EV:0100101 xref: FBbt:00004828 xref: FMA:45664 xref: GAID:386 xref: HAO:0000505 xref: MA:0000396 xref: MESH:A.05.360.444 xref: ncithesaurus:Male_Reproductive_System xref: OG:0000725 xref: OpenCyc:Mx4rvViCepwpEbGdrcN5Y29ycA xref: SCTID:361340001 xref: TGMA:0000634 xref: WBbt:0008423 xref: XAO:0000155 is_a: UBERON:0000990 ! reproductive system relationship: part_of UBERON:0003101 intersection_of: UBERON:0000990 ! reproductive system intersection_of: part_of UBERON:0003101 ! male organism disjoint_from: UBERON:0000474 ! female reproductive system relationship: part_of UBERON:0003101 ! male organism [Term] id: UBERON:0000080 name: mesonephros def: "In mammals, the mesonephros is the second of the three embryonic kidneys to be established and exists only transiently. In lower vertebrates such as fish and amphibia, the mesonephros will form the mature kidney[GO]. One of three excretory organs that develop in vertebrates. It serves as the main excretory organ of aquatic vertebrates and as a temporary kidney in higher vertebrates. composed of the mesonephric duct (also called the Wolffian duct), mesonephric tubules, and associated capillary tufts. A single tubule and its associated capillary tuft is called a mesonephric excretory unit; these units are similar in structure and function to nephrons of the adult kidney. The mesonephros is derived from intermediate mesoderm in the vertebrate embryo." [GO:0001823, Wikipedia:Mesonephros] comment: By contrast to the pronephros, the histological features of the mesonephros, with its primitive glomeruli, suggest that it probably functions as a primitive kidney, and is involved in the production of much of the amniotic fluid. Within the two mesonephroi, one located on either side of the dorsal mesentery of the hindgut, a substantial number (in the region of about 40 or more) of cranio-caudally segmented mesonephric tubules are formed. It has, however, been suggested that only the most rostrally located 4-6 pairs of mesonephric tubules drain into the mesonephric portion of the nephric duct. This is now seen to extend along the length of the mesonephroi, being located towards their lateral sides. The mesonephros is also retained over a considerably longer period than the pronephros, but gradually undergoes regression in a cranio-caudal direction. While the rostral part displays clear evidence of regression its more caudal part appears to display evidence of functional activity. Within the medial part of the mesonephros, vesicles are formed, although no glomeruli are formed there in this species. It is, however, difficult to believe that the relatively enormous mesonephroi do not have an excretory role in the mouse, only serving as a base for gonadal differentiation. In the human embryo, the medial part of the mesonephric tubules enlarges, become invaginated by capillaries, and form glomeruli. These then take on an excretory role. In the mouse, the mesonephric ducts appear to be patent throughout their length[GUDMAP] subset: organ_slim subset: vertebrate_core synonym: "mesonephric kidney" EXACT [XAO:0000141] synonym: "mesonephroi" EXACT PLURAL [http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron] synonym: "opisthonephros" RELATED [OG:0000038, XAO:0000141] synonym: "opisto nephros" RELATED [] synonym: "opistonephros" RELATED [http://www.usm.maine.edu/bio/courses/bio205/bio205_26_sex.html] synonym: "Wolffian body" EXACT [BTO:0001542, GOC:yaf, MESH:A.16.254.500, Wikipedia:Mesonephros] xref: BTO:0001542 xref: EFO:0000928 xref: EHDAA:1581 xref: EHDAA:5903 xref: EHDAA2:0001130 xref: EMAPA:16744 xref: EMAPA:27644 xref: FMA:72171 xref: GAID:1308 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ad/Gray986.png/200px-Gray986.png xref: MESH:A.16.254.500 xref: ncithesaurus:Mesonephros xref: OG:0000038 xref: SCTID:308799002 xref: XAO:0000141 xref: ZFA:0000529 is_a: UBERON:0002113 ! kidney is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: develops_from UBERON:0002120 ! pronephros [Term] id: UBERON:0000081 name: metanephros def: "In mammals, the metanephros is the excretory organ of the fetus, which develops into the mature kidney and is formed from the rear portion of the nephrogenic cord. The metanephros is an endocrine and metabolic organ that filters the blood and excretes the end products of body metabolism in the form of urine[GO]. During the fifth week of gestation, the mesonephric duct develops an outpouching, the ureteric bud, near its attachment to the cloaca. This bud, also called the metanephrogenic diverticulum, grows posteriorly and towards the head of the embryo. The elongated stalk of the ureteric bud, the metanephric duct, later forms the ureter. As the cranial end of the bud extends into the intermediate mesoderm, it undergoes a series of branchings to form the collecting duct system of the kidney. It also forms the major and minor calyces and the renal pelvis." [GO:0001656, Wikipedia:Metanephros#Metanephros] comment: TODO check developmental relationships subset: organ_slim synonym: "definite kidney" RELATED [BTO:0001543] synonym: "definitive kidney" RELATED [BTO:0001543] synonym: "hind kidney" RELATED [BTO:0001543] synonym: "metanephron" EXACT [BTO:0001543] xref: BTO:0001543 xref: EHDAA:3089 xref: EHDAA:5911 xref: EHDAA2:0001137 xref: EMAPA:17207 xref: EMAPA:17373 xref: FMA:72172 xref: ncithesaurus:Metanephros xref: OG:0000039 xref: SCTID:308797000 is_a: UBERON:0002113 ! kidney is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: develops_from UBERON:0005080 {source="GO"} ! metanephric ureteric bud relationship: develops_from UBERON:0005753 ! caudal part of nephrogenic cord relationship: replaces UBERON:0000080 {source="ISBN:9780878932504"} ! mesonephros [Term] id: UBERON:0000082 name: adult mammalian kidney is_a: UBERON:0002113 ! kidney is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: develops_from UBERON:0000081 ! metanephros relationship: develops_from UBERON:0000084 ! ureteric bud [Term] id: UBERON:0000083 name: mesonephric tubule def: "A mesonephric tubule is an epithelial tube that is part of the mesonephros[GO]. Genital ridge that is next to the mesonephros[WP]." [Wikipedia:Mesonephric_tubules] comment: TODO check xref: AAO:0010389 xref: EHDAA2:0001134 xref: EMAPA:27588 xref: EMAPA:27659 xref: OG:0000500 xref: XAO:0000148 is_a: UBERON:0003914 ! implied link automatically realized ! epithelial tube is_a: UBERON:0005103 ! implied link automatically realized ! mesonephric epithelium is_a: UBERON:0006555 ! implied link automatically realized ! excretory tube relationship: part_of UBERON:0000080 intersection_of: UBERON:0003914 ! epithelial tube intersection_of: part_of UBERON:0000080 ! mesonephros [Term] id: UBERON:0000084 name: ureteric bud def: "a protrusion from the mesonephric duct during the development of the urinary and reproductive organs. It later develops into the adult kidney, except for the nephrons, which, in contrast, originate from the metanephric blastema[WP]. epithelial swelling on the Wolffian duct that elongates to invade the adjacent metanephric mesenchyme[MP]" [MP:0010979, PMID:19828308, Wikipedia:Ureteric_bud] synonym: "diverticulum" RELATED [BTO:0001646] synonym: "metanephric bud" RELATED [BTO:0001646] synonym: "metanephric diverticulum" RELATED [Wikipedia:Metanephros#Metanephros] xref: BTO:0001646 xref: EHDAA:3091 xref: EHDAA:5917 xref: EHDAA2:0002140 xref: EMAPA:17209 xref: EMAPA:17376 xref: ncithesaurus:Metanephric_Diverticulum xref: OG:0000541 xref: SCTID:361528000 is_a: UBERON:0000083 ! implied link automatically realized ! mesonephric tubule is_a: UBERON:0007499 {source="EHDAA2"} ! epithelial sac relationship: develops_from UBERON:0003074 {source="EHDAA2"} ! mesonephric duct relationship: induced_by UBERON:0003220 {source="ISBN:9780878932504"} ! metanephric mesenchyme relationship: part_of UBERON:0003074 ! mesonephric duct [Term] id: UBERON:0000085 name: morula def: "An embryo at an early stage of embryonic development, consisting of cells (called blastomeres) in a solid ball contained within the zona pellucida[WP] The compacted embryo before cavity formation." [Wikipedia:Morula] xref: BTO:0001508 xref: EHDAA2:0000005 xref: GAID:1295 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c6/Blastulation.png/200px-Blastulation.png xref: MESH:A.16.254.270.550 xref: ncithesaurus:Morula xref: SCTID:361474003 xref: XAO:1000029 is_a: UBERON:0000307 ! implied link automatically realized ! blastula is_a: UBERON:0000922 ! embryo relationship: existence_starts_and_ends_during UBERON:0000108 ! blastula stage relationship: surrounded_by UBERON:0000086 ! zona pellucida [Term] id: UBERON:0000086 name: zona pellucida def: "A glycoprotein membrane surrounding the plasma membrane of an oocyte. It is a vital constitutive part of the latter, external but not extraneous to it. The zona pellucida first appears in multilaminar primary oocytes." [Wikipedia:Zona_pellucida] subset: vertebrate_core synonym: "oolemma" RELATED [BTO:0003135] synonym: "pellucid zone" RELATED [BTO:0003135] synonym: "striated membrane" RELATED [BTO:0003135] synonym: "vitelline envelope" RELATED [] synonym: "vitelline membrane" RELATED [] synonym: "zona radiata" RELATED [BTO:0003135] synonym: "zona striata" RELATED [BTO:0003135] xref: BTO:0003135 xref: EHDAA:31 xref: EHDAA:62 xref: EHDAA2:0002220 xref: EMAPA:16035 xref: EMAPA:16049 xref: FMA:18674 xref: GAID:410 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Gray3.png/200px-Gray3.png xref: MA:0001715 xref: MESH:A.05.360.490.690.950 xref: ncithesaurus:Zona_Pellucida xref: ZFA:0001111 is_a: UBERON:0000476 ! acellular anatomical structure is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0000992 ! female gonad [Term] id: UBERON:0000087 name: inner cell mass def: "Mass of cells inside the primordial embryo that will eventually give rise to the definitive structures of the fetus. This structure forms in the earliest steps of development, before implantation into the endometrium of the uterus has occurred. The ICM lies within the blastocoele (more correctly termed 'blastocyst cavity', as it is not strictly homologous to the blastocoele of anamniote vertebrates) and is entirely surrounded by the single layer of cells called trophoblast." [Wikipedia:Inner_cell_mass] subset: early_development synonym: "embryoblast" RELATED [] synonym: "pluriblast" RELATED [] xref: EFO:0000547 xref: EHDAA:40 xref: EHDAA2:0000830 xref: EMAPA:16041 xref: FMA:86557 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/72/Blastocyst_English.svg/200px-Blastocyst_English.svg.png xref: ncithesaurus:Inner_Cell_Mass xref: OG:0000742 xref: SCTID:361456007 is_a: UBERON:0002050 ! embryonic structure relationship: develops_from UBERON:0000358 {source="Wikipedia"} ! blastocyst relationship: surrounded_by UBERON:0000088 ! trophoblast [Term] id: UBERON:0000088 name: trophoblast def: "Aggregate of cells forming the outer layer of a blastocyst, which provide nutrients to the embryo and develop into a large part of the placenta. They are formed during the first stage of pregnancy and are the first cells to differentiate from the fertilized egg." [Wikipedia:Trophoblast] subset: early_development synonym: "trophoblast layer" RELATED [MP:0005031] synonym: "trophoderm" RELATED [BTO:0001079] xref: BTO:0001079 xref: EV:0100120 xref: FMA:83029 xref: GAID:1152 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/72/Blastocyst_English.svg/200px-Blastocyst_English.svg.png xref: MESH:A.11.936 xref: SCTID:362839005 is_a: UBERON:0002050 ! embryonic structure [Term] id: UBERON:0000089 name: hypoblast def: "The inner of the two layers of the blastoderm that forms during gastrulation and give rise to the definitive mesoderm and endoderm" [Wikipedia:Hypoblast, ZFIN:curator] comment: this term groups together disparate structures with different relationships. TODO - consider relationship to UBERON:0000091 subset: early_development subset: uberon_slim subset: vertebrate_core synonym: "mesendoderm" EXACT [ZFIN:ZDB-PUB-961014-576] xref: AAO:0000229 xref: AAO:0010619 xref: BTO:0003953 xref: EFO:0001930 xref: http://upload.wikimedia.org/wikipedia/commons/0/02/Cell_differentiation_gastrula.PNG xref: MAT:0000418 xref: MIAA:0000418 xref: ncithesaurus:Hypoblast xref: OG:0001222 xref: TAO:0000117 xref: XAO:0003044 xref: ZFA:0000117 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0004750 ! blastoderm [Term] id: UBERON:0000090 name: blastocele def: "fluid-filled central region of a blastocyst. A blastocoele forms during embryogenesis when a zygote (a fertilized ovum) divides into many cells through mitosis." [Wikipedia:Blastocele] subset: early_development synonym: "blastocoele" EXACT [] synonym: "blastocoelic cavity" EXACT [EHDAA2:0000175] synonym: "blastocyst cavity" EXACT [] synonym: "cleavage cavity" EXACT [] synonym: "segmentation cavity" EXACT [] xref: AAO:0010433 xref: EHDAA:50 xref: EHDAA2:0000175 xref: EMAPA:16044 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Blastocyst.gif/200px-Blastocyst.gif xref: OG:0000811 xref: SCTID:361455006 xref: XAO:0000294 is_a: UBERON:0002553 ! anatomical cavity relationship: surrounded_by UBERON:0002532 ! epiblast [Term] id: UBERON:0000091 name: bilaminar disc def: "the epiblast and the hypoblast, evolved from the embryoblast" [Wikipedia:Bilaminar_disc] subset: early_development xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e3/Gray21.png/200px-Gray21.png is_a: UBERON:0002050 ! embryonic structure relationship: develops_from UBERON:0000087 ! inner cell mass [Term] id: UBERON:0000092 name: post-embryonic stage def: "stage succeeding embryo, including mature structure" [UBERON:cjm] synonym: "postembryonic" RELATED [] synonym: "postembryonic stage" EXACT [] xref: OGES:000010 xref: OGES:000014 xref: OGES:000024 xref: WBls:0000022 is_a: UBERON:0000105 ! life cycle stage disjoint_from: UBERON:0000068 ! embryo stage relationship: part_of UBERON:0000104 ! life cycle relationship: preceded_by UBERON:0000068 ! embryo stage [Term] id: UBERON:0000093 name: sulcus def: "a depression or fissure in the surface of an organ." [Wikipedia:Sulcus_(anatomy)] is_a: UBERON:0000464 ! anatomical space created_by: cjm creation_date: 2009-04-09T06:23:22Z [Term] id: UBERON:0000094 name: membrane organ def: "Nonparenchymatous organ that primarily consists of dense connective tissue organized into a sheet which interconnects two or more organs, separates two or more body spaces from one another, or surrounds an organ or body part. Examples: interosseous membrane of forearm, obturator membrane, tympanic membrane, fibrous pericardium, fascia lata, dura mater. [FMA]" [FMA:7145] synonym: "membrane of organ" EXACT [] xref: FMA:7145 is_a: UBERON:0000062 ! organ created_by: cjm creation_date: 2009-07-30T05:19:13Z [Term] id: UBERON:0000095 name: cardiac neural crest def: "portion of neural crest that develops from the dorsal neural tube. It overlaps the vagal neural crest and migrates to populate the pharyngeal arches 3, 4 and 6 (producing structures in the head) and to the heart, forming connective tissue that separates the great vessels of the heart. [Wikipedia]" [Wikipedia:Cardiac_neural_crest] subset: vertebrate_core synonym: "cardiac neural crest complex" RELATED [Wikipedia:Cardiac_neural_crest] xref: XAO:0004190 xref: ZFA:0001648 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue relationship: overlaps UBERON:0005428 ! vagal neural crest relationship: part_of UBERON:0002342 ! neural crest created_by: cjm creation_date: 2009-07-30T07:57:38Z [Term] id: UBERON:0000100 name: blastopore def: "Structure around the opening into the archenteron during the embryonic stages of an organism. The distinction between protostomes and deuterostomes is based on the direction in which the mouth (stoma) develops in relation to the blastopore." [Wikipedia:Blastopore] comment: In protostome development, the first opening in development, the blastopore, becomes the animal's mouth; In deuterostome development, the blastopore becomes the animal's anus subset: early_development subset: metazoa_core xref: AAO:0000045 xref: BTO:0001695 xref: XAO:0000208 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: part_of UBERON:0004735 ! archenteron [Term] id: UBERON:0000101 name: lobe of lung def: "A lung lobe is one of the rounded projections that compose the lung[GO]." [GOC:GO] synonym: "lung lobe" EXACT [] synonym: "pulminory lobe" EXACT [] synonym: "pulmonary lobe" EXACT [FMA:7311] xref: FMA:7311 xref: galen:LobeOfLung xref: ncithesaurus:Lung_Lobe xref: OpenCyc:Mx4rvo6-vpwpEbGdrcN5Y29ycA xref: SCTID:245524004 is_a: UBERON:0000064 ! organ part is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0002048 ! lung [Term] id: UBERON:0000102 name: lung vasculature def: "The lung vasculature is composed of the tubule structures that carry blood or lymph in the lungs[GO]." [GOC:GO] synonym: "lung vascular network" EXACT [OBOL:automatic] synonym: "pulmonary vasculature" EXACT [FMA:73750] synonym: "vascular network of lung" EXACT [OBOL:automatic] synonym: "vasculature of lung" EXACT [OBOL:automatic] xref: FMA:73750 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002049 ! vasculature is_a: UBERON:0002201 ! implied link automatically realized ! vasculature of trunk is_a: UBERON:0006876 ! implied link automatically realized ! vasculature of organ relationship: part_of UBERON:0002048 intersection_of: UBERON:0002049 ! vasculature intersection_of: part_of UBERON:0002048 ! lung [Term] id: UBERON:0000103 name: life cycle stage boundary def: "Instant starting or ending a life cycle stage. These can be arbitrary/fiat." [UBERON:cjm] subset: upper_level synonym: "life cycle stage transition event" EXACT [] synonym: "life cycle stage transition instant" EXACT [] xref: span:ProcessBoundary is_a: UBERON:0000000 ! processual entity disjoint_from: UBERON:0000105 ! life cycle stage [Term] id: UBERON:0000104 name: life cycle def: "An entire span of an organism's life, commencing with the zygote stage and ending in the death of the organism." [UBERON:cjm] subset: upper_level synonym: "life" EXACT [] synonym: "lifespan" EXACT [] xref: FBdv_root:00000000 xref: ncithesaurus:Life xref: OGES:000011 is_a: UBERON:0000105 ! life cycle stage [Term] id: UBERON:0000105 name: life cycle stage def: "A spatiotemporal region encompassing some part of the life cycle of an organism." [UBERON:cjm] subset: upper_level synonym: "developmental stage" EXACT [] synonym: "stage" NARROW [] xref: BILS:0000105 xref: EFO:0000399 xref: ncithesaurus:Developmental_Stage xref: WBls:0000002 xref: XAO:1000000 xref: ZFS:0100000 is_a: UBERON:0000000 ! processual entity relationship: has_end UBERON:0000103 ! life cycle stage boundary relationship: has_start UBERON:0000103 ! life cycle stage boundary [Term] id: UBERON:0000106 name: zygote stage def: "A stage at which the organism is a single cell produced by means of sexual reproduction." [Wikipedia:Zygote] synonym: "1-cell stage" EXACT [] synonym: "fertilized egg stage" EXACT [BTO:0000854] synonym: "one cell stage" EXACT [] xref: BILS:0000106 xref: EHDAA:27 xref: EMAPA:16033 xref: OG:0000745 xref: XAO:1000001 xref: ZFS:0000001 is_a: UBERON:0000067 ! implied link automatically realized ! embryo stage part is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000068 ! embryo stage relationship: starts UBERON:0000104 ! life cycle [Term] id: UBERON:0000107 name: cleavage stage def: "The first few specialized divisions of an activated animal egg; Stage consisting of division of cells in the early embryo. The zygotes of many species undergo rapid cell cycles with no significant growth, producing a cluster of cells the same size as the original zygote. The different cells derived from cleavage are called blastomeres and form a compact mass called the morula. Cleavage ends with the formation of the blastula." [GO:0040016, Wikipedia:Cleavage_(embryo)] xref: BILS:0000107 xref: EFO:0001290 xref: MESH:A.16.254.270 xref: OGES:000015 xref: OGES:000020 xref: XAO:1000004 is_a: UBERON:0000067 ! implied link automatically realized ! embryo stage part relationship: directly_preceded_by UBERON:0000106 ! zygote stage relationship: part_of UBERON:0000068 ! embryo stage [Term] id: UBERON:0000108 name: blastula stage def: "An early stage of embryonic development in animals. It is produced by cleavage of a fertilized ovum and consists of a spherical layer of around 128 cells surrounding a central fluid-filled cavity called the blastocoel. The blastula follows the morula and precedes the gastrula in the developmental sequence." [Wikipedia:Blastula] xref: BILS:0000108 xref: EFO:0001282 xref: GAID:1294 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c6/Blastulation.png/200px-Blastulation.png xref: OGES:000003 xref: OGES:000016 xref: OGES:000021 xref: OpenCyc:Mx4rEetFnKP2EdqAAAACs4vPlg xref: XAO:1000003 is_a: UBERON:0000067 ! implied link automatically realized ! embryo stage part is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000068 ! embryo stage relationship: preceded_by UBERON:0000107 ! cleavage stage [Term] id: UBERON:0000109 name: gastrula stage def: "A stage defined by complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals. The details of gastrulation vary from species to species, but usually result in the formation of the three primary germ layers, ectoderm, mesoderm and endoderm." [GO:0007369] xref: BILS:0000109 xref: EFO:0001296 xref: FBdv:00005317 xref: OGES:000004 xref: OGES:000019 xref: XAO:1000005 is_a: UBERON:0000067 ! implied link automatically realized ! embryo stage part is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000068 ! embryo stage relationship: preceded_by UBERON:0000108 ! blastula stage [Term] id: UBERON:0000110 name: neurula stage def: "Staged defined by the formation of a tube from the flat layer of ectodermal cells known as the neural plate. This will give rise to the central nervous system." [GO:0001841] xref: BILS:0000110 xref: XAO:1000006 is_a: UBERON:0000067 ! implied link automatically realized ! embryo stage part is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000068 ! embryo stage relationship: preceded_by UBERON:0000109 ! gastrula stage [Term] id: UBERON:0000111 name: organogenesis stage def: "A stage at which the ectoderm, endoderm, and mesoderm develop into the internal organs of the organism." [Wikipedia:Organogenesis] synonym: "segmentation stage" RELATED [] xref: BILS:0000111 xref: OGES:000005 xref: OGES:000032 is_a: UBERON:0000067 ! implied link automatically realized ! embryo stage part is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000068 ! embryo stage relationship: preceded_by UBERON:0000110 ! neurula stage [Term] id: UBERON:0000112 name: juvenile stage def: "The stage of being a sexually immature adult animal." [XAO:1000010] xref: BILS:0000112 xref: BTO:0002168 xref: EFO:0001300 xref: EV:0300051 xref: OGES:000009 xref: XAO:1000010 xref: ZFS:0000042 xref: ZFS:0000043 is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000066 ! fully formed stage [Term] id: UBERON:0000113 name: post-juvenile adult stage alt_id: UBERON:MIAA_0000403-XAO_1000009 def: "The stage of being a sexually mature adult animal." [UBERON:cjm] synonym: "adult stage" BROAD [] xref: BILS:0000113 xref: BTO:0001043 xref: EV:0300064 xref: EV:0300070 xref: MIAA:0000403 xref: OGES:000026 xref: OGES:000027 xref: XAO:1000009 xref: ZFS:0000044 is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000066 ! fully formed stage relationship: preceded_by UBERON:0000112 ! juvenile stage [Term] id: UBERON:0000114 name: lung connective tissue def: "A portion of connective tissue that is part of a lung [Obol]." [OBOL:automatic] synonym: "connective tissue of lung" EXACT [OBOL:automatic] synonym: "lung interstitial tissue" RELATED [MA:0001782] synonym: "lung portion of connective tissue" EXACT [OBOL:automatic] synonym: "lung textus connectivus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of lung" EXACT [OBOL:automatic] synonym: "textus connectivus of lung" EXACT [OBOL:automatic] xref: MA:0001782 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002384 ! connective tissue is_a: UBERON:0003570 ! implied link automatically realized ! respiratory system connective tissue is_a: UBERON:0003593 ! implied link automatically realized ! thoracic cavity connective tissue relationship: part_of UBERON:0002048 intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0002048 ! lung [Term] id: UBERON:0000115 name: lung epithelium def: "the epithelial layer of the lung." [MP:0006382] synonym: "epithelial tissue of lung" EXACT [OBOL:automatic] synonym: "epithelium of lung" EXACT [OBOL:automatic] synonym: "lung epithelial tissue" EXACT [OBOL:automatic] synonym: "pulmonary epithelium" RELATED [BTO:0001653] xref: BTO:0001653 xref: MA:0001783 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000483 ! epithelium is_a: UBERON:0004802 ! implied link automatically realized ! respiratory tract epithelium relationship: part_of UBERON:0002048 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002048 ! lung relationship: develops_from UBERON:0001041 ! foregut [Term] id: UBERON:0000116 name: lung saccule def: "Primitive gas exchange portion of the lung composed of type I and type II cells[GO]." [GO:0060430] is_a: UBERON:0000064 ! organ part is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0002299 {source="GO"} ! alveolus of lung [Term] id: UBERON:0000117 name: respiratory tube def: "A tube in the respiratory tract." [GO:0030323] is_a: UBERON:0000025 ! tube is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: part_of UBERON:0000065 intersection_of: UBERON:0000025 ! tube intersection_of: part_of UBERON:0000065 ! respiratory tract [Term] id: UBERON:0000118 name: lung bud def: "Structure derived from foregut that becomes a lung." [GO:0060431, Wikipedia:Lung_buds] synonym: "lung bud" RELATED PLURAL [] synonym: "primary lung bud" RELATED [] synonym: "respiratory diverticulum" RELATED [Wikipedia:Lung_buds] xref: BTO:0001643 xref: EHDAA2:0004089 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/71/Gray948.png/200px-Gray948.png xref: ncithesaurus:Respiratory_Diverticulum xref: SCTID:361427007 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005153 {source="GO:0060572"} ! epithelial bud is_a: UBERON:0005911 ! implied link automatically realized ! endo-epithelium relationship: adjacent_to UBERON:0004872 ! splanchnic layer of lateral plate mesoderm relationship: develops_from UBERON:0005597 ! lung primordium [Term] id: UBERON:0000119 name: cell layer def: "Portion of tissue, that consists of one or more layers of cells connected to each other by cell junctions" [UBERON:cjm] synonym: "cell sheath" RELATED [] synonym: "layer of cells" EXACT [] is_a: UBERON:0000479 ! tissue [Term] id: UBERON:0000120 name: blood brain barrier def: "Cell layer consisting of lining cells that separates the central nervous system and the bloodstream. The BBB may consist of endothelial cells or glial cells. An endothelial barrier may have arisen independently several times during evolution. In bichir and lungfish the barrier is formed by brain endothelial cells, while in sturgeon it is formed by a complex perivascular glial sheath, but with no detectable tight junctions." [DOI:10.1002/glia.20642, Wikipedia:Blood-brain_barrier] synonym: "BBB" RELATED [] synonym: "blood-brain barrier" EXACT [] xref: ncithesaurus:Blood-Brain_Barrier xref: NIF_Subcellular:nlx_subcell_100205 is_a: UBERON:0000119 ! cell layer relationship: adjacent_to UBERON:0000179 ! haemolymphatic fluid relationship: adjacent_to UBERON:0000955 ! brain [Term] id: UBERON:0000121 name: perineurium def: "Connective tissue surrounding a fascicle." [Wikipedia:Perineurium] xref: BTO:0003153 xref: FMA:52585 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9c/Gray636.png/200px-Gray636.png xref: ncithesaurus:Perineurium xref: NIF_GrossAnatomy:nlx_anat_090205 xref: SCTID:362299001 is_a: UBERON:0002384 ! connective tissue relationship: surrounds UBERON:0001019 ! fascicle [Term] id: UBERON:0000122 name: neuron projection bundle alt_id: UBERON:0005163 def: "A fasciculated bundle of neuron projections (GO:0043005), largely or completely lacking synapses." [CARO:0001001, FBbt:00005099, FBC:DOS] synonym: "funiculus" EXACT [] synonym: "nerve fiber bundle" EXACT [FBbt:00005099] synonym: "neural fiber bundle" EXACT [] xref: CARO:0001001 xref: FBbt:00005099 is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system is_a: UBERON:0005162 ! multi-cell-component structure relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0000123 name: endoneurium def: "a layer of delicate connective tissue that encloses the myelin sheath of a nerve fiber within a funiculus." [Wikipedia:Endodeurium] xref: FMA:52586 xref: ncithesaurus:Endoneurium xref: NIF_GrossAnatomy:nlx_anat_090202 xref: SCTID:15931004 is_a: UBERON:0002384 ! connective tissue relationship: surrounds UBERON:0001021 ! nerve [Term] id: UBERON:0000124 name: epineurium def: "outermost layer of connective tissue surrounding a peripheral nerve. It includes the blood vessels supplying the nerve. It consists of adipose tissue and fibrocollagenous tissues." [Wikipedia:Epineurium] xref: BTO:0003154 xref: FMA:12234 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9c/Gray636.png/200px-Gray636.png xref: ncithesaurus:Epineurium xref: NIF_GrossAnatomy:nlx_anat_090203 xref: SCTID:64482002 is_a: UBERON:0002384 ! connective tissue relationship: surrounds UBERON:0002003 ! peripheral nerve [Term] id: UBERON:0000125 name: neural nucleus def: "Anatomical structure consisting of a discrete aggregate of neuronal soma[GO]." [GO:0048857, GO_REF:0000021, Wikipedia:Nucleus_(neuroanatomy)] comment: do not include NIF_Subcellular:sao1702920020 Nucleus. Proposed CUMBO def from MM: A subcortical part of the nervous system consisting of a relatively compact group of cells that is distinguishable histologically that share a commonality of cytoarchitecture, chemoarchitecturel and connectivity. (comments: I put in "subcortical" because I don't think we consider either the cerebellar cortex or cerebral cortex to be nuclei. Some people distinguish between a nucleus and a laminar structure (see Wikipedia definition). However, there are structures identified as nuclei that are laminar, e.g., lateral geniculate nucleus, although they are not laminated in all species. Also, I put in "relatively compact" and "distiguishable by histology" because we have groups of cells, e.g., cholinergic cell groups, doparminergic cell groups that are related on the 3 criteria but which we don't tend to consider nuclei because they don't occupy an easily defined territory. But all is open to debate. synonym: "neuraxis nucleus" EXACT [FMA:83686] synonym: "nucleus" BROAD [] synonym: "nucleus of neuraxis" RELATED [] xref: FMA:83686 is_a: UBERON:0000064 ! organ part is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0000126 name: cranial nerve nucleus def: "collection of neurons (gray matter) in the brain stem that is associated with one or more cranial nerves." [Wikipedia:Cranial_nerve_nucleus] synonym: "cranial neural nucleus" EXACT [FMA:54501] synonym: "nucleus of cranial nerve" EXACT [] xref: FMA:54501 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray696.png/200px-Gray696.png xref: SCTID:280160003 is_a: UBERON:0002308 ! nucleus of brain relationship: overlaps UBERON:0001785 intersection_of: UBERON:0002308 ! nucleus of brain intersection_of: overlaps UBERON:0001785 ! cranial nerve [Term] id: UBERON:0000127 name: facial nucleus comment: FMA has 3 subclasses - left, right and motor nucleus of facial nerve, but no defs. It's not clear how facial nucleus is distinct from facial motor nucleus. synonym: "facial nerve nucleus" EXACT [] synonym: "facial VII motor nucleus" RELATED [MA:0001014] synonym: "facial VII nucleus" EXACT [MA:0001014] synonym: "nucleus of facial nerve" EXACT [FMA:54572] xref: BM:Pons-VII xref: EV:0100267 xref: FMA:54572 xref: MA:0001014 xref: ncithesaurus:Facial_Nerve_Nucleus xref: OG:0001412 xref: SCTID:280166009 is_a: UBERON:0000126 ! cranial nerve nucleus is_a: UBERON:0006331 ! implied link automatically realized ! brainstem nucleus is_a: UBERON:0009662 ! implied link automatically realized ! hindbrain nucleus relationship: part_of UBERON:0000988 ! pons [Term] id: UBERON:0000128 name: olivary body def: "prominent oval structure in the medulla oblongata, present in pairs, the lower portion of the brainstem. They contain the olivary nuclei" [Wikipedia:Olivary_body] synonym: "olive" RELATED [] synonym: "olive body" EXACT [] xref: BTO:0002299 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9a/Gray679.png/200px-Gray679.png xref: SCTID:279293003 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0000130 name: transverse foramen def: "Foramen that pierces the transverse processes of the seven cervical vertebrae. In the upper six vertebrae, the foramen gives passage to the vertebral artery, vertebral vein, and a plexus of sympathetic nerves. The seventh foramen lacks the artery, but contains the vein and sympathetic nerves." [Wikipedia:Transverse_foramen] synonym: "foramen transversarium" EXACT [Wikipedia:Transverse_foramen] synonym: "foramen transversarium of cervical vertebra" EXACT [FMA:23998] synonym: "transverse foramen of cervical vertebra" EXACT [FMA:23997] xref: FMA:23997 xref: SCTID:280735005 is_a: UBERON:0004111 {source="FMA"} ! anatomical conduit relationship: surrounded_by UBERON:0001077 ! transverse process of vertebra [Term] id: UBERON:0000144 name: trochlea of humerus def: "The medial portion of the articular surface of the humerus is named the trochlea, and presents a deep depression between two well-marked borders; it is convex from before backward, concave from side to side, and occupies the anterior, lower, and posterior parts of the extremity. It is directly inferior to the most prominent anterior humeral fossia, the Coronoid fossia. It articulates with the ulna." [Wikipedia:Trochlea_of_humerus] synonym: "humeral trochlea" EXACT [FMA:23370] xref: FMA:23370 xref: SCTID:282817004 is_a: UBERON:0005055 ! implied link automatically realized ! zone of long bone is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ relationship: part_of UBERON:0004404 ! distal epiphysis of humerus [Term] id: UBERON:0000151 name: pectoral fin def: "The paired pectoral fins are located on each side, usually just behind the operculum, and are homologous to the forelimbs of tetrapods." [Wikipedia:Pectoral_fin#Fins] comment: check definition of limb such that is excludes fins. Note the GO includes pectoral and pelvic fins as types of limbs. The Actinopterygii (ray finned fish) pectoral and pelvic fins aren't homologous as fore- or hindlimbs to those of tetrapods, whereas those of the Sarcopterygii (lobe finned fish) are in fact homologous. xref: BTO:0004653 xref: SCTID:416982006 xref: TAO:0001161 xref: ZFA:0001161 is_a: UBERON:0002534 ! pectoral/pelvic fin is_a: UBERON:0004710 ! implied link automatically realized ! limb/fin of anterior region of body relationship: develops_from UBERON:0005419 ! forelimb/pectoral fin bud relationship: part_of UBERON:0000153 ! anterior region of body [Term] id: UBERON:0000152 name: pelvic fin def: "The paired pelvic or ventral fins are located ventrally below the pectoral fins. They are homologous to the hindlimbs of tetrapods. The pelvic fin assists the fish in going up or down through the water, turning sharply, and stopping quickly." [Wikipedia:Pectoral_fin#Fins] comment: check definition of limb such that is excludes fins. Note the GO includes pectoral and pelvic fins as types of limbs. xref: BTO:0004651 xref: EFO:0003644 xref: TAO:0001184 xref: ZFA:0001184 is_a: UBERON:0002534 ! pectoral/pelvic fin is_a: UBERON:0004709 ! implied link automatically realized ! limb/fin of posterior region of body relationship: develops_from UBERON:0005420 ! hindlimb/pelvic fin bud relationship: part_of UBERON:0000154 ! posterior region of body [Term] id: UBERON:0000153 name: anterior region of body is_a: UBERON:0000475 ! organism subdivision relationship: anterior_to UBERON:0000154 ! posterior region of body [Term] id: UBERON:0000154 name: posterior region of body is_a: UBERON:0000475 ! organism subdivision [Term] id: UBERON:0000155 name: theca cell layer def: "A layer of the ovarian follicles. They appear as the follicles become tertiary follicles. The theca folliculi are responsible for the production of testosterone from androstenedione in females, and indirectly the production of estrogens by supplying the neighboring granulosa cells with androstenedione that can then be used as a substrate for aromatase." [Wikipedia:Theca_of_follicle] subset: vertebrate_core synonym: "layer of theca cells" EXACT [] synonym: "theca cell layer of ovarian follicle" EXACT [] synonym: "theca folliculi" RELATED [] synonym: "theca of follicle" EXACT [] synonym: "thecal cell layer" EXACT [ZFA:0001113] xref: BTO:0002853 xref: EFO:0003629 xref: FMA:18656 xref: TAO:0001113 xref: ZFA:0001113 is_a: UBERON:0000119 ! cell layer is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0001305 ! ovarian follicle [Term] id: UBERON:0000156 name: theca externa alt_id: UBERON:0005182 def: "The theca externa is the outer layers of the theca folliculi. It contains abundant collagen and is mainly supportive." [Wikipedia:Theca_externa] synonym: "external coat of theca folliculi" RELATED [BTO:0002852] synonym: "ovary theca externa" EXACT [MA:0001713] synonym: "theca externa (folliculus ovaricus tertiarius)" EXACT [FMA:18657] synonym: "tunica externa of theca folliculi" EXACT [FMA:18657] synonym: "tunica externa thecae folliculi" RELATED [BTO:0002852] xref: BTO:0002852 xref: FMA:18657 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/50/Mature_Graffian_follicle.jpg/200px-Mature_Graffian_follicle.jpg xref: MA:0001713 xref: SCTID:258767003 is_a: UBERON:0000158 ! membranous layer is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0000155 ! theca cell layer relationship: surrounds UBERON:0000157 ! theca interna [Term] id: UBERON:0000157 name: theca interna alt_id: UBERON:0005183 def: "Theca interna cells express receptors for luteinizing hormone, which when activated will stimulate the production of androstenedione from cholesterol by the enzyme desmolase. Androstenedione ultimately gives the granulosa cells the precursor substrate for estrogen manufacturing." [Wikipedia:Theca_externa#Theca_interna] synonym: "internal coat of capsule of graafian follicle" RELATED [BTO:0002851] synonym: "ovary theca interna" EXACT [MA:0001714] synonym: "theca interna (folliculus ovaricus tertiarius)" EXACT [FMA:18658] synonym: "tunica interna of theca folliculi" EXACT [FMA:18658] synonym: "tunica interna thecae folliculi" RELATED [BTO:0002851] xref: BTO:0002851 xref: FMA:18658 xref: MA:0001714 xref: SCTID:258869006 is_a: UBERON:0000158 ! membranous layer is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0000155 ! theca cell layer [Term] id: UBERON:0000158 name: membranous layer synonym: "membranous organ component" EXACT [FMA:82500] xref: FMA:82500 is_a: UBERON:0004923 ! organ component layer [Term] id: UBERON:0000159 name: anal canal def: "The terminal part of the large intestine, continuous proximally with the rectum and distally terminates with the anus." [Wikipedia:Anal_canal] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "adult alimentary canal" RELATED [] synonym: "anal canal" EXACT [] synonym: "anal canal viewed anatomically" EXACT [] synonym: "anal pad" RELATED [] synonym: "anatomical anal canal" EXACT [] synonym: "anus" RELATED [] synonym: "canalis analis" RELATED [BTO:0001978] synonym: "cloaca" RELATED [] synonym: "cloacal chamber" RELATED [] synonym: "mesenteron" RELATED [] synonym: "pars analis recti" RELATED [BTO:0001978] xref: BTO:0001978 xref: EMAPA:18256 xref: FMA:15703 xref: galen:AnalCanal xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/17/Gray1078.png/200px-Gray1078.png xref: MA:0000330 xref: ncithesaurus:Anal_Canal xref: SCTID:245438008 xref: TGMA:0001022 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004111 ! anatomical conduit relationship: part_of UBERON:0000059 ! large intestine relationship: part_of UBERON:0001353 ! anal region relationship: part_of UBERON:0006866 ! terminal part of digestive tract [Term] id: UBERON:0000160 name: intestine alt_id: UBERON:FBbt_00005785-FMA_15703-FMA_7199-MA_0000328-MA_0000330-MIAA_0000042-MIAA_0000043-WBbt_0005772-WBbt_0005774-XAO_0000129-XAO_0000244-ZFA_0000330-ZFA_0001338 def: "Segment of the alimentary canal extending from the stomach to the anus and, in humans and other mammals, consists of two segments, the small intestine and the large intestine." [GOC:GO, Wikipedia:Intestine] comment: MA also has a class MA:0001524 bowel, not clear how this is different subset: uberon_slim subset: vertebrate_core synonym: "bowel" EXACT [] xref: AAO:0000246 xref: ANISEED:1235303 xref: BTO:0000648 xref: EFO:0000834 xref: EV:0100071 xref: FMA:7199 xref: GAID:295 xref: galen:Intestine xref: MA:0000328 xref: MA:0001524 xref: MESH:A.03.492.411 xref: MIAA:0000043 xref: ncithesaurus:Intestine xref: OG:0000056 xref: SCTID:256876008 xref: TAO:0001338 xref: WBbt:0005772 xref: XAO:0000129 xref: ZFA:0001338 is_a: UBERON:0004921 ! subdivision of digestive tract relationship: part_of UBERON:0001555 ! digestive tract relationship: part_of UBERON:0005409 ! gastrointestinal system [Term] id: UBERON:0000161 name: orifice def: "Anatomical conduit that connects two adjacent body spaces, surrounded by two or more subdivisions of two or more organs. Examples: right atrioventricular orifice, orifice of artery, hilum of kidney, porta hepatis[FMA,modified]." [FMA:3724] comment: in FMA, this is an anatomical conduit *space*, rather than anatomical conduit subset: upper_ontology_conflict synonym: "anatomical orifice" EXACT [FMA:3724] synonym: "anatomical ostium" EXACT [FMA:3724] synonym: "hilum" NARROW [] xref: FMA:3724 xref: SCTID:91837002 is_a: UBERON:0004111 ! anatomical conduit [Term] id: UBERON:0000162 name: cloaca def: "Posterior opening that serves as the only such opening for the intestinal and urinary tracts of certain animal species" [Wikipedia:Cloaca] comment: Human beings only have an embryonic cloaca, which is split up into separate tracts during the development of the urinary and reproductive organs[WP] synonym: "cloacal chamber" RELATED [] synonym: "vent" RELATED [] xref: AAO:0000095 xref: GAID:1206 xref: MESH:A.13.223 xref: ncithesaurus:Cloaca xref: OG:0001186 xref: SCTID:362857006 xref: WBbt:0005774 xref: XAO:0000244 xref: ZFA:0000330 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000161 ! orifice relationship: part_of UBERON:0001555 ! digestive tract relationship: part_of UBERON:0004122 ! genitourinary system [Term] id: UBERON:0000163 name: embryonic cloaca def: "Structure in the development of the urinary and reproductive organs[WP]. endoderm-lined chamber into which the hidgut and allantois empty in early embryos[MP]." [MP:0010115, Wikipedia:Cloaca_(embryology)] comment: compare UBERON:0000162 cloaca synonym: "cloaca" RELATED SENSU [] xref: EHDAA:4895 xref: EHDAA2:0000256 xref: EMAPA:27573 xref: EMAPA:27638 is_a: UBERON:0000162 ! cloaca is_a: UBERON:0002050 ! embryonic structure relationship: develops_from UBERON:0003064 ! intermediate mesoderm relationship: part_of UBERON:0001353 ! anal region [Term] id: UBERON:0000164 name: primitive urogenital sinus def: "Part of the human body only present in the development of the urinary and reproductive organs. It is the ventral part of the cloaca, formed after the cloaca separates from the rectum. It eventually becomes, among other things, the bladder[WP]. ventral part of the cloaca remaining after septation of the rectum, which further develops into part of the bladder, part of the prostatic part of the male urethra and the urethra and vestibule in females[MP]." [Wikipedia:Urogenital_sinus] comment: Note that the term "urogenital sinus" may refer to the primitive urogenital sinus present as a transient developmental structure in most mammals or it may refer to a condition in which an unseptated cloaca persists in animals longer than normal[MP] synonym: "fetal UGS" EXACT [PMID:18977204] synonym: "UGS" EXACT [MP:0010116] synonym: "urogenital sinus" EXACT [MP:0010116] xref: EHDAA:5029 xref: EHDAA:5919 xref: EHDAA2:0004060 xref: EMAPA:17211 xref: EMAPA:17379 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6d/Gray1109.png/200px-Gray1109.png xref: ncithesaurus:Urogenital_Sinus xref: OG:0000414 xref: SCTID:50961009 is_a: UBERON:0005423 ! developing anatomical structure relationship: develops_from UBERON:0003064 ! intermediate mesoderm relationship: part_of UBERON:0000163 ! embryonic cloaca relationship: part_of UBERON:0001008 {source="EHDAA2"} ! excretory system [Term] id: UBERON:0000165 name: mouth def: "First portion of the digestive tract[WP]. The portion of the digestive that develops from the stomodeum" [Wikipedia:Mouth] comment: TODO - check fly mouthpart. note in uberon we distinguish between the mouth and the oral opening. the mouth is part of the digestive tract. TODO - check isa parent subdivision of head - is it a subdivision of the head or digestive tract subset: major_organ subset: uberon_slim subset: vertebrate_core synonym: "adult mouth" EXACT [] synonym: "cavitas oris" RELATED [BTO:0001090] synonym: "cavum oris" RELATED [BTO:0001090] synonym: "mouth cavity" RELATED [BTO:0001090] synonym: "oral vestibule" RELATED [BTO:0001090] synonym: "regio oralis" EXACT [FMA:49184, FMA:TA] synonym: "rima oris" RELATED [BTO:0001090] synonym: "stoma" RELATED [] synonym: "vestibule of mouth" RELATED [BTO:0001090] synonym: "vestibulum oris" RELATED [BTO:0001090] xref: AAO:0010355 xref: BTO:0001090 xref: EFO:0000825 xref: FBbt:00003126 xref: FMA:49184 xref: GAID:75 xref: galen:Mouth xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d4/Illu01_head_neck.jpg/200px-Illu01_head_neck.jpg xref: MA:0002474 xref: MAT:0000038 xref: MESH:A.01.456.505.631 xref: MIAA:0000038 xref: OG:0000812 xref: OpenCyc:Mx4rvVidh5wpEbGdrcN5Y29ycA xref: TADS:0000040 xref: TAO:0000547 xref: TGMA:0000131 xref: XAO:0003029 xref: ZFA:0000547 is_a: UBERON:0001444 ! subdivision of head is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: develops_from UBERON:0000930 ! stomodeum relationship: part_of UBERON:0001555 ! digestive tract [Term] id: UBERON:0000166 name: oral opening def: "The opening of the head through which food passes into the body." [NLM:mouth] comment: note MA includes as parts of 'oral region' the tongue, tonsils, etc, so an equivalence to the oral opening itself may not be appropriate. subset: uberon_slim subset: vertebrate_core synonym: "adult mouth" RELATED [] synonym: "mouth" RELATED [] synonym: "oral fissure" EXACT [FMA:59806] synonym: "oral orifice" EXACT [FMA:59806] synonym: "oral part of face" EXACT [] synonym: "oral region" EXACT [] synonym: "orofacial cavity" RELATED [] synonym: "subdivision of mouth" EXACT [] xref: BTO:0004698 xref: EHDAA:542 xref: EHDAA2:0001326 xref: EMAPA:16262 xref: FMA:59806 xref: MA:0000341 xref: OG:0000280 xref: TAO:0000590 xref: TGMA:0000131 xref: ZFA:0000590 is_a: UBERON:0000161 {source="FMA"} ! orifice is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0000165 ! mouth relationship: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0000167 name: oral cavity subset: uberon_slim subset: vertebrate_core synonym: "buccal cavity" EXACT [FMA:20292] synonym: "cavity of mouth" EXACT [] xref: AAO:0000053 xref: AAO:0000960 xref: EFO:0001975 xref: EHDAA:6970 xref: EHDAA2:0001324 xref: EMAPA:17411 xref: EV:0100057 xref: FMA:20292 xref: HAO:0000669 xref: ncithesaurus:Oral_Cavity xref: OG:0000188 xref: SCTID:181220002 xref: TAO:0001027 xref: TGMA:0000102 xref: WBbt:0005255 xref: XAO:0000126 xref: ZFA:0001027 is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0000165 ! mouth [Term] id: UBERON:0000168 name: segment of colon def: "An organ segment that is part of a colon [Obol]." [OBOL:automatic] xref: FMA:222905 is_a: UBERON:0000063 ! implied link automatically realized ! organ segment is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: part_of UBERON:0001155 intersection_of: UBERON:0000063 ! organ segment intersection_of: part_of UBERON:0001155 ! colon [Term] id: UBERON:0000170 name: pair of lungs synonym: "lungs" EXACT [] synonym: "lungs pair" EXACT [] synonym: "pulmones" EXACT [FMA:68877, FMA:TA] synonym: "set of lungs" EXACT [] xref: BTO:0000763 xref: EFO:0000934 xref: FMA:68877 xref: ncithesaurus:Lung xref: OpenCyc:Mx4rvVjKy5wpEbGdrcN5Y29ycA is_a: UBERON:0000477 ! anatomical cluster relationship: has_part UBERON:0002167 ! right lung relationship: has_part UBERON:0002168 ! left lung [Term] id: UBERON:0000171 name: respiration organ def: "Organ that functions in gaseous exchange between an organism and its environment. In plants, microorganisms, and many small animals, air or water makes direct contact with the organism's cells or tissue fluids, and the processes of diffusion supply the organism with dioxygen (O2) and remove carbon dioxide (CO2). In larger animals the efficiency of gaseous exchange is improved by specialized respiratory organs, such as lungs and gills, which are ventilated by breathing mechanisms." [GO:0007585] subset: functional_classification subset: organ_slim synonym: "apparatus respiratorius organ" EXACT [OBOL:automatic] synonym: "breathing organ" EXACT [] synonym: "gas exchange organ" RELATED [] synonym: "organ of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "organ of respiratory system" EXACT [OBOL:automatic] synonym: "respiratory organ" EXACT [] synonym: "respiratory system organ" EXACT [OBOL:automatic] xref: EMAPA:17607 xref: SCTID:272626006 xref: SPD:0000428 xref: TGMA:0001247 is_a: UBERON:0000062 ! implied link automatically realized ! organ relationship: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0000172 name: vomit def: "Vomit is a bodily fluid consisting of the expulsed contents of the stomach of an organism disgorged through the mouth or nose." [ENVO:00000338] xref: ENVO:00000338 xref: galen:Vomitus xref: OpenCyc:Mx4rvViQTJwpEbGdrcN5Y29ycA is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0000173 name: amniotic fluid def: "Amniotic fluid is a bodily fluid consisting of watery liquid surrounding and cushioning a growing fetus within the amnion. It allows the fetus to move freely without the walls of the uterus being too tight against its body. Buoyancy is also provided." [ENVO:02000021] synonym: "acqua amnii" RELATED [BTO:0000068] synonym: "liquor amnii" RELATED [BTO:0000068] xref: BTO:0000068 xref: ENVO:02000021 xref: EV:0100123 xref: GAID:1155 xref: MA:0002893 xref: MESH:A.12.098 xref: ncithesaurus:Amniotic_Fluid xref: OG:0001267 is_a: UBERON:0000463 ! portion of organism substance relationship: surrounds UBERON:0000922 ! embryo [Term] id: UBERON:0000174 name: excreta alt_id: UBERON:0000324 alt_id: UBERON:0007550 alt_id: UBERON:BTO_0000491-FMA_9674 def: "Excreta are bodily fluids consisting of waste matter, such as sweat or feces, discharged from the body." [ENVO:02000022] synonym: "excretion" EXACT [BTO:0000491] synonym: "waste substance" EXACT [AEO:0000184] xref: AEO:0000184 xref: BTO:0000491 xref: EHDAA2:0003184 xref: ENVO:02000022 xref: FMA:9674 xref: galen:Excretion is_a: UBERON:0000463 ! portion of organism substance relationship: secreted_by UBERON:0001008 {note="dubious"} ! excretory system [Term] id: UBERON:0000175 name: pleural effusion def: "Pleural effusion is a bodily fluid that is produced in exess and accumulates in the pleural cavity, the fluid-filled space that surrounds the lungs. Excessive amounts of such fluid can impair breathing by limiting the expansion of the lungs during inhalation." [ENVO:02000033] comment: cede to MPATH? Note the ncit class is under finding. xref: ENVO:02000033 xref: ncithesaurus:Pleural_Effusion xref: OpenCyc:Mx4rLaTGCK2TEduAAAAOpmP6tw is_a: UBERON:0001087 ! pleural fluid [Term] id: UBERON:0000176 name: oronasal secretion def: "Oronasal secretion is a bodily fluid secreted from the body via the mouth or nose." [ENVO:02000035] xref: ENVO:02000035 is_a: UBERON:0000463 ! portion of organism substance relationship: secreted_by UBERON:0001826 ! nasal cavity mucosa [Term] id: UBERON:0000177 name: pus def: "Pus is a bodily fluid consisting of a whitish-yellow or yellow substance produced during inflammatory responses of the body that can be found in regions of pyogenic bacterial infections. Pus is produced from the dead and living cells which travel into the intercellular spaces around the affected cells." [ENVO:02000038] xref: ENVO:02000038 xref: galen:Pus xref: ncithesaurus:Pus xref: OpenCyc:Mx4rvVjG6ZwpEbGdrcN5Y29ycA is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0000178 name: blood def: "Circulating body substance which consists of blood plasma and hemoglobin-carrying red blood cells. Excludes blood analogues (see UBERON:0000179 haemolymphatic fluid)." [FMA:9670, Wikipedia:Blood] subset: uberon_slim subset: vertebrate_core synonym: "portion of blood" EXACT [] synonym: "vertebrate blood" EXACT [] synonym: "whole blood" RELATED [BTO:0000089] xref: AAO:0000046 xref: BTO:0000089 xref: EFO:0000296 xref: EHDAA:418 xref: EHDAA2:0000176 xref: EMAPA:16332 xref: ENVO:02000027 xref: EV:0100047 xref: FMA:9670 xref: GAID:965 xref: galen:Blood xref: MA:0000059 xref: MESH:A.12.207.152 xref: MIAA:0000315 xref: ncithesaurus:Blood xref: OG:0000224 xref: OpenCyc:Mx4rvVjI8JwpEbGdrcN5Y29ycA xref: TAO:0000007 xref: XAO:0000124 xref: ZFA:0000007 is_a: UBERON:0000179 ! haemolymphatic fluid relationship: part_of UBERON:0002390 ! hematopoietic system relationship: part_of UBERON:0004535 ! cardiovascular system [Term] id: UBERON:0000179 name: haemolymphatic fluid def: "Circulating fluid that is part of the hemolymphoid system. Blood, lymph, interstitial fluid or its analogs." [] synonym: "blood or blood analog" RELATED [] synonym: "haematological system portion of organism substance" EXACT [OBOL:automatic] synonym: "haemopoietic system portion of organism substance" EXACT [OBOL:automatic] synonym: "hematopoietic system portion of organism substance" EXACT [OBOL:automatic] synonym: "organa haemopoietica portion of organism substance" EXACT [OBOL:automatic] synonym: "portion of organism substance of haematological system" EXACT [OBOL:automatic] synonym: "portion of organism substance of haemopoietic system" EXACT [OBOL:automatic] synonym: "portion of organism substance of hematopoietic system" EXACT [OBOL:automatic] synonym: "portion of organism substance of organa haemopoietica" EXACT [OBOL:automatic] is_a: UBERON:0000463 ! portion of organism substance relationship: part_of UBERON:0002390 intersection_of: UBERON:0000463 ! portion of organism substance intersection_of: part_of UBERON:0002390 ! hematopoietic system created_by: cjm creation_date: 2009-04-08T04:38:19Z [Term] id: UBERON:0000180 name: lateral lumbar region of abdomen def: "a region of the posterior torso (lower back) beneath the ribs and above the ilium." [Wikipedia:Abdomen#9-region_scheme, Wikipedia:Flank] synonym: "flank" EXACT [FMA:14603] synonym: "lateral region" EXACT [FMA:14603] synonym: "lateral region of abdomen" EXACT [FMA:14603] synonym: "latus" EXACT [FMA:14603] synonym: "regio lateralis" EXACT [FMA:14603] xref: FMA:14603 xref: galen:Flank xref: http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray1220.png xref: SCTID:243329008 is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0000916 ! abdomen [Term] id: UBERON:0000199 name: neck of radius def: "the narrow part of the shaft of the radius just below the head." [http://www.medilexicon.com/medicaldictionary.php?t=58913] synonym: "radial neck" EXACT [FMA:23479] xref: FMA:23479 xref: galen:NeckOfRadius xref: SCTID:181942005 is_a: UBERON:0005055 ! implied link automatically realized ! zone of long bone is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0004413 {source="FMA"} ! proximal epiphysis of radius [Term] id: UBERON:0000200 name: gyrus def: "A ridge, generally surrounded by one or more sulci." [Wikipedia:Gyrus] synonym: "cerebral gyrus" EXACT [BTO:0002495] synonym: "gyri" RELATED PLURAL [BTO:0002495] synonym: "gyri of cerebrum" RELATED PLURAL [BTO:0002495] synonym: "gyrus of cerebrum" RELATED [BTO:0002495] synonym: "gyrus of neuraxis" EXACT [FMA:83874] xref: BTO:0002495 xref: FMA:83874 xref: ncithesaurus:Cerebral_Gyrus xref: SCTID:279165009 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001869 ! cerebral hemisphere relationship: surrounded_by UBERON:0000093 ! sulcus [Term] id: UBERON:0000201 name: endothelial blood brain barrier def: "A blood brain barrier that is composed of endothelial cells." [UBERON:cjm] xref: NIF_Subcellular:nlx_subcell_100205 is_a: UBERON:0000120 ! blood brain barrier relationship: has_part UBERON:0001986 ! endothelium created_by: cjm creation_date: 2009-04-10T08:15:44Z [Term] id: UBERON:0000202 name: glial blood brain barrier def: "A blood brain barrier composed of glial cells." [UBERON:cjm] xref: FBbt:00007091 is_a: UBERON:0000120 ! blood brain barrier created_by: cjm creation_date: 2009-04-10T08:42:24Z [Term] id: UBERON:0000203 name: pallium def: "Roof region of the telencephalon[GO]. In humans the cerebrum has three parts: the archipallium, the paleopallium and the neopallium. The developing telencephalon or forebrain is divided into pallium and subpallium. In amphibians, the cerebrum includes archipallium, paleopallium and some of the basal nuclei. Reptiles first developed a neopallium, which continued to develop in the brains of more recent species to become the neocortex of humans and Old World monkeys. In fish, the archipallium is the largest part of the cerebrum. Some researchers suggest the early archipallium gave rise to the human hippocampus." [GO:0021543, Wikipedia:Pallium_(neuroanatomy)] comment: Editor note: check comparative anatomy subset: developmental_classification xref: SCTID:369224000 xref: ZFA:0007007 is_a: UBERON:0002020 {source="ZFA"} ! gray matter of neuraxis is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001893 ! telencephalon created_by: cjm creation_date: 2009-04-18T12:03:09Z [Term] id: UBERON:0000204 name: ventral telencephalon def: "Base region of the telencephalon." [GO:0021544, GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, GOC:mtg_15jun06, PMID:12626695] comment: note that the term subpallium sometimes refers specifically to the avian structure subset: developmental_classification synonym: "area ventralis telencephali" EXACT [ZFA:0000304] synonym: "subpallium" NARROW [BTO:0003401, GO:0021544, ZFA:0000304] xref: BTO:0003401 xref: EFO:0003522 xref: ZFA:0000304 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: adjacent_to UBERON:0000203 ! pallium relationship: part_of UBERON:0001893 ! telencephalon created_by: cjm creation_date: 2009-04-18T12:12:27Z [Term] id: UBERON:0000205 name: echinoderm gill def: "Respiration in the Echinodermata (includes starfish and sea urchins) is carried out using a very primitive version of gills called papulli. These are thin protuberances on the surface of the body containing diverticula of the water vascular system." [] synonym: "papulli" EXACT [] is_a: UBERON:0002535 ! gill created_by: cjm creation_date: 2009-04-18T01:13:57Z [Term] id: UBERON:0000206 name: pharyngeal gill def: "Gills of vertebrates are developed in the walls of the pharynx along a series of gill slits opening to the exterior. In fish, the gills are located on both sides of the pharynx. Gills are made of filaments which help increase surface area for oxygen exchange. In bony fish, the gills are covered by a bony cover called an operculum. When a fish breathes, it opens its mouth at regular times and draws in a mouthful of water. It then draws the sides of its throat together, forcing the water through the gill openings. The water passes over the gills on the outside. Valves inside the mouth keep the water from escaping through the mouth again. The operculum can be very important in adjusting the pressure of water inside of the pharynx to allow proper ventilation of the gills. Lampreys and sharks lack an operculum, they have multiple gill openings. Also, they must use different methods to force water over the gills. In sharks and rays, this ventilation of the gills is achieved either by the use of spiracles or ram ventilation (ventilation by constantly swimming). Although some animals use this method it is much better for animals to use a spiracle because they are less susceptible to injury." [Wikipedia:Gill#Vertebrate_gills] xref: ANISEED:1235300 is_a: UBERON:0002535 ! gill relationship: adjacent_to UBERON:0001042 ! chordate pharynx created_by: cjm creation_date: 2009-04-18T01:18:17Z [Term] id: UBERON:0000207 name: compound eye corneal lens def: "A chitinous extracellular secretion of the four underlying cone cells and the pigment cells." [GO:0048058] synonym: "acellular lens" RELATED [] xref: FBbt:00004199 xref: TADS:0000304 is_a: UBERON:0000476 ! acellular anatomical structure is_a: UBERON:0005389 ! transparent eye structure relationship: part_of UBERON:0000018 ! compound eye created_by: cjm creation_date: 2009-04-18T01:35:32Z [Term] id: UBERON:0000208 name: cellular lens is_obsolete: true replaced_by: UBERON:0000965 created_by: cjm creation_date: 2009-04-18T01:37:39Z [Term] id: UBERON:0000209 name: tetrapod frontal bone alt_id: UBERON:FMA_9613-MA_0001469-ZFA_0000486 def: "In humans: A bone resembling a cockleshell in two portions the squama frontalis, corresponding with the region of the forehead, and an orbital or horizontal portion, the pars orbitalis, which enters into the formation of the roofs of the orbital and nasal cavities." [Wikipedia:Frontal_bone] comment: The parietal bone in teleost fish is the homolog of the frontal bone in tetrapods. In the mouse the parietal originates from cephalic paraxial mesoderm (Jiang 2000; Morriss-Kay 2001), whereas in the chicken it is traced back to either mesodermal (Noden 1978) or neural crest (Couly 1992, 1993). synonym: "frontal" NARROW [AAO:0000206] synonym: "frontal bone" NARROW [FMA:52734, MA:0001466] xref: AAO:0000206 xref: EMAPA:19016 xref: FMA:52734 xref: GAID:226 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/97/Gray136.png/200px-Gray136.png xref: MA:0001466 xref: MESH:A.02.835.232.781.375 xref: ncithesaurus:Frontal_Bone xref: OG:0001324 is_a: UBERON:0002514 ! intramembranous bone is_a: UBERON:0004766 ! implied link automatically realized ! cranial bone relationship: adjacent_to UBERON:0001697 ! orbit relationship: part_of UBERON:0001703 ! neurocranium [Term] id: UBERON:0000210 name: tetrapod parietal bone alt_id: UBERON:FMA_52734-MA_0001466-ZFA_0000514 def: "In humans: bone forming side and roof of cranium. Each bone is irregularly quadrilateral in form, and has two surfaces, four borders, and four angles." [Wikipedia:Parietal_bone, ZFA:0000514] comment: The frontal bone in teleost fish is the homolog of the parietal bone in tetrapods synonym: "frontal bone" NARROW [TAO:0000514] synonym: "os parietale" RELATED [Wikipedia:Parietal_bone] synonym: "parietal" NARROW SENSU [AAO:0000390] synonym: "parietal bone" NARROW SENSU [FMA:9613] synonym: "teleost frontal bone" NARROW [TAO:0000514] xref: AAO:0000390 xref: EMAPA:18715 xref: FMA:9613 xref: GAID:229 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/21/Gray132.png/200px-Gray132.png xref: MA:0001469 xref: MESH:A.02.835.232.781.651 xref: ncithesaurus:Parietal_Bone xref: OG:0001324 is_a: UBERON:0002514 ! intramembranous bone is_a: UBERON:0004766 ! implied link automatically realized ! cranial bone relationship: part_of UBERON:0001703 ! neurocranium [Term] id: UBERON:0000211 name: ligament def: "Nonparenchymatous organ that primarily consists of dense connective tissue aggregated into fasciculi by connective tissue. Examples: sutural ligament, radiate sternocostal ligament, ligament of liver, ovarian ligament[FMA]." [FMA:21496, Wikipedia:Ligament] comment: Note this groups both skeletal and non-skeletal ligaments. What is called a "ligament" in many AOs is actually a skeletal ligament subset: uberon_slim subset: vertebrate_core synonym: "ligament organ" EXACT [FMA:21496] xref: EFO:0001966 xref: FMA:21496 xref: galen:Ligament xref: MA:0000113 xref: ncithesaurus:Ligament xref: OG:0001272 xref: OpenCyc:Mx4rvVjqpZwpEbGdrcN5Y29ycA xref: SCTID:182358004 xref: XAO:0004031 is_a: UBERON:0002384 ! connective tissue [Term] id: UBERON:0000212 name: toilet claw def: "specialized claw or nail on the foot of certain primates, used for personal grooming." [Wikipedia:Toilet-claw] is_a: UBERON:0001705 ! nail created_by: cjm creation_date: 2009-05-19T08:19:58Z [Term] id: UBERON:0000218 name: vertebral arch of axis synonym: "vertebral foramen of second cervical vertebra" EXACT [] xref: FMA:24053 is_a: UBERON:0008434 ! implied link automatically realized ! cervical vertebral arch relationship: part_of UBERON:0001093 intersection_of: UBERON:0003861 ! vertebral arch intersection_of: part_of UBERON:0001093 ! second cervical vertebra [Term] id: UBERON:0000219 name: vertebral foramen of atlas def: "." [Wikipedia:Atlas_(anatomy)#Vertebral_foramen] synonym: "vertebral foramen of first cervical vertebra" EXACT [] xref: FMA:24293 xref: SCTID:281228008 is_a: UBERON:0008429 ! implied link automatically realized ! cervical vertebral foramen relationship: part_of UBERON:0001092 intersection_of: UBERON:0001131 ! vertebral foramen intersection_of: part_of UBERON:0001092 ! first cervical vertebra [Term] id: UBERON:0000220 name: atlanto-occipital joint def: "The Atlanto-occipital joint (articulation between the atlas and the occipital bone) consists of a pair of condyloid joints. The atlanto-occipital joint is a synovial joint. The ligaments connecting the bones are: Two Articular capsules; Posterior atlantoöccipital membrane; Anterior atlantoöccipital membrane; Lateral atlantoöccipital" [Wikipedia:Atlanto-occipital_joint] synonym: "articulatio atlanto-occipitalis" EXACT [FMA:24939] synonym: "craniovertebral joint" EXACT [FMA:24939] xref: FMA:24939 xref: ncithesaurus:Atlanto-occipital_Joint-Atlanto xref: SCTID:361831006 is_a: UBERON:0002217 {source="FMA"} ! synovial joint relationship: adjacent_to UBERON:0001092 ! first cervical vertebra relationship: adjacent_to UBERON:0001676 ! occipital bone [Term] id: UBERON:0000221 name: supraauricular point def: "a craniometric point on the posterior root of the zygomatic process of the temporal bone directly above the auricular point." [http://www.medilexicon.com/medicaldictionary.php?t=70620] synonym: "supra-auricular part of head" EXACT [FMA:224222] xref: FMA:224222 is_a: UBERON:0006983 {source="FMA"} ! anatomical point [Term] id: UBERON:0000301 name: amniotic cavity alt_id: UBERON:BTO_0000025-FMA_63941 def: "The amniotic cavity is formed by the fusion of the parts of the amniotic fold, which first makes its appearance at the cephalic extremity, and subsequently at the caudal end and sides of the embryo. As the amniotic fold rises and fuses over the dorsal aspect of the embryo, the amniotic cavity is formed. [WP,unvetted]." [Wikipedia:Amniotic_cavity] xref: BTO:0000025 xref: EHDAA:83 xref: EHDAA2:0000119 xref: EMAPA:16079 xref: FMA:63941 xref: ncithesaurus:Amniotic_Cavity xref: OG:0000855 xref: SCTID:280366002 is_a: UBERON:0000464 ! anatomical space relationship: has_part UBERON:0000173 ! amniotic fluid [Term] id: UBERON:0000303 name: adductor longus alt_id: UBERON:BTO_0000029-FMA_22441 def: "The adductor longus muscle is a muscle of the human body. It is a part of the adductor group of the thigh, that as the name suggests adducts the thigh. The adductor longus muscle forms the medial wall of the femoral triangle[WP]." [Wikipedia:Adductor_longus_muscle] synonym: "adductor longus muscle" EXACT [] synonym: "long adductor muscle" RELATED [BTO:0000029] synonym: "musculus adductor longus" RELATED [BTO:0000029] xref: BTO:0000029 xref: FMA:22441 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e2/Anterior_Hip_Muscles_2.PNG/200px-Anterior_Hip_Muscles_2.PNG xref: SCTID:181686003 is_a: UBERON:0000952 ! adductor muscle is_a: UBERON:0004252 ! implied link automatically realized ! hindlimb stylopod muscle relationship: part_of UBERON:0000376 ! hindlimb stylopod [Term] id: UBERON:0000304 name: tendon sheath alt_id: UBERON:BTO_0000051-FMA_76715 def: "A layer of membrane around a tendon. It has 2 layers: synovial sheath + fibrous tendon sheath" [Wikipedia:Tendon_sheath] comment: TODO: add layer relations xref: BTO:0000051 xref: FMA:76715 xref: SCTID:361885006 is_a: UBERON:0002018 ! synovial membrane relationship: surrounds UBERON:0000043 ! tendon [Term] id: UBERON:0000305 name: amnion alt_id: UBERON:BTO_0000065-FMA_80223 def: "A membrane building the amniotic sac that surrounds and protects an embryo. It is developed in reptiles, birds, and mammals, which are hence called “Amniota”; but not in amphibians and fish (Ichthyopsida), which are consequently termed “Anamniota”. The primary function of this is the protection of the embryo for its development. It stems from parts of the mesoderm on the outer side and the ectoderm on the inner side[WP]." [Wikipedia:Amnion] xref: BTO:0000065 xref: EHDAA:136 xref: EHDAA2:0000116 xref: EMAPA:16109 xref: EV:0100122 xref: FMA:80223 xref: GAID:1298 xref: MESH:A.16.254.403.277 xref: ncithesaurus:Amnion xref: OG:0000721 xref: SCTID:181457005 is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0005631 ! extraembryonic membrane relationship: develops_from UBERON:0000924 {source="ISBN10:0073040584"} ! ectoderm relationship: develops_from UBERON:0004871 {source="ISBN10:0073040584"} ! somatic layer of lateral plate mesoderm relationship: surrounds UBERON:0000922 ! embryo [Term] id: UBERON:0000307 name: blastula alt_id: UBERON:0007011 alt_id: UBERON:BTO_0000128-FMA_83041 def: "Organism at the blastula stage - an early stage of embryonic development in animals. It is produced by cleavage of a fertilized ovum and consists of a spherical layer of around 128 cells surrounding a central fluid-filled cavity called the blastocoel. The blastula follows the morula and precedes the gastrula in the developmental sequence." [Wikipedia:Blastula] comment: TODO - check relationship with epiblast. Note in FMA this is not a subclass of embryo, but in uberon embryo is the whole organism from zygote onwards and thus includes the blastula subset: inconsistent_with_fma synonym: "blastosphere" RELATED [Wikipedia:Blastula] synonym: "blastula embryo" EXACT [BILA:0000059] xref: BILA:0000059 xref: BTO:0000128 xref: GAID:1294 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c6/Blastulation.png/200px-Blastulation.png xref: MESH:A.16.254.270.274 xref: OGEM:000006 xref: OpenCyc:Mx4rEetFnKP2EdqAAAACs4vPlg is_a: UBERON:0000922 ! embryo relationship: existence_starts_and_ends_during UBERON:0000108 intersection_of: UBERON:0000468 ! multi-cellular organism intersection_of: existence_starts_and_ends_during UBERON:0000108 ! blastula stage [Term] id: UBERON:0000309 name: body wall alt_id: UBERON:BTO_0000139-FMA_10427 def: "the external portion of an animal body comprised of ectoderm and mesoderm layers that encloses the body cavity." [MP:0003385] synonym: "Koerperwand" RELATED [BTO:0000139] synonym: "trunk wall" EXACT [FMA:10427] synonym: "wall of trunk" EXACT [FMA:10427] xref: BTO:0000139 xref: FMA:10427 xref: galen:BodyWall xref: SCTID:281483004 is_a: UBERON:0000060 ! anatomical wall relationship: part_of UBERON:0002100 ! trunk [Term] id: UBERON:0000310 name: breast alt_id: UBERON:BTO_0000149-FMA_9601 def: "The breast is the upper ventral region of an animal's torso, particularly that of mammals, including human beings. The breasts of a female primate’s body contain the mammary glands, which secrete milk used to feed infants. Both men and women develop breasts from the same embryological tissues. However, at puberty female sex hormones, mainly estrogens, promote breast development, which does not happen with men. As a result women's breasts become more prominent than men's. [WP,unvetted]." [Wikipedia:Breast] synonym: "mammary part of chest" EXACT [FMA:9601] synonym: "mammary region" EXACT [FMA:9601] xref: BTO:0000149 xref: EV:0100124 xref: FMA:9601 xref: GAID:33 xref: galen:Breast xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6e/Closeup_of_female_breast.jpg/200px-Closeup_of_female_breast.jpg xref: MESH:A.01.236 xref: ncithesaurus:Breast xref: OpenCyc:Mx4rvVjV7ZwpEbGdrcN5Y29ycA xref: SCTID:181131000 is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0001443 ! chest [Term] id: UBERON:0000311 name: extensor muscle alt_id: UBERON:BTO_0000151-FMA_74561 def: "A muscle that, upon contraction, tends to straighten a joint or limb. The antagonist of a flexor muscle[BTO]. Any of the muscles that increase the angle between members of a limb, as by straightening the elbow or knee or bending the wrist or spine backward. The movement is usually directed backward, with the notable exception of the knee joint. In humans, certain muscles of the hand and foot are named for this function. In the hand these include the extensor carpi radialis brevis, extensor carpi radialis longus, and extensor carpi ulnaris, which run from the humerus (bone of the upper arm) along the back of the forearm to the metacarpal bones at the back of the hand[Britannica]" [http://www.britannica.com/EBchecked/topic/198909/extensor-muscle] synonym: "extensor" RELATED [] xref: BTO:0000151 xref: FMA:75000 is_a: UBERON:0001630 ! muscle organ relationship: part_of UBERON:0004708 ! limb/fin [Term] id: UBERON:0000312 name: inner cambium layer of periosteum alt_id: UBERON:BTO_0000170-FMA_234358 synonym: "cambial layer" EXACT [FMA:234358] synonym: "cambial layer of periosteum" EXACT [FMA:234358] synonym: "cambium" EXACT [] synonym: "cambium layer of periosteum" EXACT [FMA:234358] synonym: "inner cambial layer of periosteum" EXACT [FMA:234358] synonym: "osteogenic layer of periosteum" EXACT [Wikipedia:Periosteum] xref: FMA:234358 is_a: UBERON:0000158 ! membranous layer is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0002515 {source="FMA"} ! periosteum [Term] id: UBERON:0000313 name: tibial cartilage alt_id: UBERON:BTO_0000207-FMA_33923 def: "A cartilage that is part of a tibia [Obol]." [OBOL:automatic] synonym: "cartilage of tibia" EXACT [FMA:33923] xref: BTO:0000207 xref: FMA:33923 is_a: UBERON:0002384 ! connective tissue is_a: UBERON:0004270 ! implied link automatically realized ! lower leg connective tissue is_a: UBERON:0007391 ! implied link automatically realized ! hind limb/fin cartilage relationship: part_of UBERON:0000979 intersection_of: UBERON:0002418 ! cartilage tissue intersection_of: part_of UBERON:0000979 ! tibia [Term] id: UBERON:0000314 name: cecum mucosa alt_id: UBERON:BTO_0000213-FMA_14998 def: "A mucosa that is part of a cecum [Obol]." [OBOL:automatic] synonym: "caecum mucosa" EXACT [OBOL:automatic] synonym: "caecum mucosa of organ" EXACT [OBOL:automatic] synonym: "caecum mucous membrane" EXACT [OBOL:automatic] synonym: "caecum organ mucosa" EXACT [OBOL:automatic] synonym: "Cecal mucosa" EXACT [FMA:14998] synonym: "cecum mucosa of organ" EXACT [OBOL:automatic] synonym: "cecum mucous membrane" EXACT [OBOL:automatic] synonym: "cecum organ mucosa" EXACT [OBOL:automatic] synonym: "intestinum crassum caecum mucosa" EXACT [OBOL:automatic] synonym: "intestinum crassum caecum mucosa of organ" EXACT [OBOL:automatic] synonym: "intestinum crassum caecum mucous membrane" EXACT [OBOL:automatic] synonym: "intestinum crassum caecum organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of caecum" EXACT [OBOL:automatic] synonym: "mucosa of cecum" EXACT [OBOL:automatic] synonym: "mucosa of intestinum crassum caecum" EXACT [OBOL:automatic] synonym: "mucosa of organ of caecum" EXACT [OBOL:automatic] synonym: "mucosa of organ of cecum" EXACT [OBOL:automatic] synonym: "mucosa of organ of intestinum crassum caecum" EXACT [OBOL:automatic] synonym: "mucous membrane of caecum" EXACT [OBOL:automatic] synonym: "mucous membrane of cecum" EXACT [OBOL:automatic] synonym: "mucous membrane of intestinum crassum caecum" EXACT [OBOL:automatic] synonym: "organ mucosa of caecum" EXACT [OBOL:automatic] synonym: "organ mucosa of cecum" EXACT [OBOL:automatic] synonym: "organ mucosa of intestinum crassum caecum" EXACT [OBOL:automatic] xref: BTO:0000213 xref: FMA:14998 is_a: UBERON:0000064 ! organ part is_a: UBERON:0000317 ! implied link automatically realized ! colonic mucosa relationship: part_of UBERON:0001153 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001153 ! caecum [Term] id: UBERON:0000315 name: subarachnoid space alt_id: UBERON:BTO_0000230-FMA_83716 def: "the space between the arachnoid and dura mater that is traversed by fibrous trabeculae and contains cerebrospinal fluid." [MP:0009027, Wikipedia:Subarachnoid_space] synonym: "cavitas subarachnoidea" RELATED [BTO:0000230] synonym: "spatium leptomeningeum" RELATED [BTO:0000230] synonym: "spatium subarachnoideum" RELATED [BTO:0000230] synonym: "subarachnoid cavity" RELATED [BTO:0000230] xref: BTO:0000230 xref: EMAPA:18211 xref: EMAPA:19053 xref: EMAPA:19054 xref: EMAPA:19055 xref: EMAPA:25079 xref: FMA:83716 xref: GAID:689 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f8/Gray769.png/200px-Gray769.png xref: MESH:A.08.186.566.166.686 xref: SCTID:362311001 is_a: UBERON:0000464 ! implied link automatically realized ! anatomical space relationship: adjacent_to UBERON:0002361 relationship: adjacent_to UBERON:0002362 intersection_of: UBERON:0000464 ! anatomical space intersection_of: adjacent_to UBERON:0002361 ! pia mater intersection_of: adjacent_to UBERON:0002362 ! arachnoid mater relationship: contains UBERON:0001359 ! cerebrospinal fluid [Term] id: UBERON:0000316 name: cervical mucus alt_id: UBERON:BTO_0000242-FMA_83689 def: "Thick acidic mucus that blocks the cervical os after mestruation[WP]. This 'infertile' mucus blocks spermatozoa from entering the uterus." [Wikipedia:Cervix#Cervical_mucus, Wikipedia:Mucus#Reproductive_system] xref: BTO:0000242 xref: FMA:83689 xref: MESH:A.12.200.503.339 is_a: UBERON:0000912 {source="FMA"} ! mucus [Term] id: UBERON:0000317 name: colonic mucosa alt_id: UBERON:0003347 alt_id: UBERON:0004981 alt_id: UBERON:BTO_0000271-FMA_14984 def: "A mucosa that is part of a colon [Obol]." [OBOL:automatic] synonym: "colon mucosa" EXACT [FMA:14984] synonym: "colon mucosa of organ" EXACT [OBOL:automatic] synonym: "colon mucous membrane" EXACT [OBOL:automatic] synonym: "colon organ mucosa" EXACT [OBOL:automatic] synonym: "colonic mucous membrane" EXACT [FMA:14984] synonym: "large bowel mucosa" EXACT [OBOL:automatic] synonym: "large bowel mucosa of organ" EXACT [OBOL:automatic] synonym: "large bowel mucous membrane" EXACT [OBOL:automatic] synonym: "large bowel organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of colon" EXACT [FMA:14984] synonym: "mucosa of large bowel" EXACT [OBOL:automatic] synonym: "mucosa of organ of colon" EXACT [OBOL:automatic] synonym: "mucosa of organ of large bowel" EXACT [OBOL:automatic] synonym: "mucosa of segment of colon" EXACT [FMA:85388] synonym: "mucous membrane of colon" EXACT [OBOL:automatic] synonym: "mucous membrane of large bowel" EXACT [OBOL:automatic] synonym: "organ mucosa of colon" EXACT [OBOL:automatic] synonym: "organ mucosa of large bowel" EXACT [OBOL:automatic] xref: BTO:0000271 xref: EFO:0003038 xref: EMAPA:27375 xref: FMA:14984 xref: FMA:85388 xref: SCTID:362157008 is_a: UBERON:0000064 ! organ part is_a: UBERON:0001207 ! implied link automatically realized ! mucosa of large intestine relationship: part_of UBERON:0001155 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001155 ! colon [Term] id: UBERON:0000319 name: cytotrophoblast alt_id: UBERON:BTO_0000322-FMA_83039 def: "The cytotrophoblast (or layer of Langhans) is the inner layer of the trophoblast, interior to the syncytiotrophoblast in an embryo. It serves to anchor the embryonic chorion to the maternal endometrium. Cytotrophoblasts are stem cells in the chorionic villi. During differentiation, mononuclear cytotrophoblast fuse together into the multinucleated syncytiotrophoblasts. The primary villi has only the cytotrophoblast as an axe. [WP,unvetted]." [Wikipedia:Cytotrophoblast] synonym: "Cellular trophoblast" EXACT [FMA:83039] synonym: "Cytotrophoblastic cell" EXACT [FMA:83039] synonym: "Langhans' layer" RELATED [BTO:0000322] xref: BTO:0000322 xref: EHDAA:127 xref: EHDAA:152 xref: EHDAA:89 xref: EMAPA:16067 xref: FMA:83039 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/df/Gray36.png/200px-Gray36.png xref: ncithesaurus:Cytotrophoblast xref: SCTID:308841008 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000088 ! trophoblast [Term] id: UBERON:0000320 name: duodenal mucosa alt_id: UBERON:0003348 alt_id: UBERON:BTO_0000367-FMA_14942 def: "A mucosa that is part of a duodenum [Obol]." [OBOL:automatic] synonym: "Doudenal mucosa" EXACT [FMA:14942] synonym: "Duodenal mucous membrane" EXACT [FMA:14942] synonym: "duodenum mucosa" RELATED [BTO:0000367] synonym: "mucosa of duodenum" EXACT [OBOL:automatic] synonym: "mucous membrane of duodenum" EXACT [OBOL:automatic] xref: BTO:0000367 xref: EMAPA:27235 xref: FMA:14942 xref: SCTID:362146003 is_a: UBERON:0001204 ! implied link automatically realized ! mucosa of small intestine relationship: part_of UBERON:0002114 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0002114 ! duodenum [Term] id: UBERON:0000322 name: cerebral lobe alt_id: UBERON:BTO_0000445-FMA_77800 comment: set/singular synonym: "Cerebral lobes" EXACT [FMA:77800] synonym: "Cerebral lobes set" EXACT [FMA:77800] synonym: "lobi cerebri" EXACT [FMA:77800, FMA:TA] xref: BTO:0000445 xref: FMA:77800 xref: SCTID:272632001 is_a: UBERON:0002619 ! regional part of cerebral cortex [Term] id: UBERON:0000323 name: late embryo alt_id: UBERON:BTO_0000449-FMA_63919 comment: TODO - check fetus/embryo. WP: An embryo is a multicellular diploid eukaryote in its earliest stage of development, from the time of first cell division until birth, hatching, or germination. In humans, it is called an embryo until about eight weeks after fertilization (i.e. ten weeks LMP), and from then it is instead called a fetus. synonym: "embryo late growth stage" RELATED [BTO:0000449] synonym: "embryo late stage" RELATED [BTO:0000449] synonym: "fetus" NARROW [BTO:0000449] xref: BTO:0000449 xref: EFO:0001323 xref: FMA:63919 xref: GAID:552 xref: MESH:A.16.378 xref: ncithesaurus:Fetus xref: OpenCyc:Mx4rvZfC2ZwpEbGdrcN5Y29ycA xref: SCTID:83418008 is_a: UBERON:0000922 ! embryo relationship: existence_ends_with UBERON:0007220 ! late embryonic stage [Term] id: UBERON:0000325 name: gastric gland alt_id: UBERON:BTO_0000503-FMA_14919 subset: grouping_class subset: organ_slim xref: BTO:0000503 xref: FMA:14919 is_a: UBERON:0002530 ! gland [Term] id: UBERON:0000326 name: pancreatic juice alt_id: UBERON:BTO_0000504-FMA_62973 def: "Pancreatic juice is slightly alkaline and contains numerous enzymes and inactive enzyme precursors including alpha-amylase, chymotrypsinogen, lipase, procarboxypeptidase, proelastase, prophospholipase A2, ribonuclease, and trypsinogen. Its high concentration of bicarbonate ions helps to neutralize the acid from the stomach." [GO:0030157] synonym: "succus pancreaticus" RELATED [BTO:0000504] xref: BTO:0000504 xref: FMA:62973 xref: GAID:1166 xref: MESH:A.12.200.567 is_a: UBERON:0000456 ! secretion [Term] id: UBERON:0000328 name: gut wall alt_id: UBERON:BTO_0000547-FMA_45653 synonym: "wall of gut" EXACT [FMA:45653] xref: BTO:0000547 xref: FMA:45653 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: part_of UBERON:0001555 ! digestive tract [Term] id: UBERON:0000329 name: hair root alt_id: UBERON:BTO_0000555-FMA_70730 def: "The enlarged basal part of a hair within the skin[BTO]. The root of the hair ends in an enlargement, the hair bulb, which is whiter in color and softer in texture than the shaft, and is lodged in a follicular involution of the epidermis called the hair follicle. [Wikipedia]." [BTO:0000555, Wikipedia:Hair_root] synonym: "root of hair" EXACT [FMA:70730] xref: BTO:0000555 xref: FMA:70730 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5e/Gray944.png/200px-Gray944.png xref: ncithesaurus:Hair_Root is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001037 ! strand of hair [Term] id: UBERON:0000331 name: ileal mucosa alt_id: UBERON:BTO_0000619-FMA_14956 def: "A mucosa that is part of a ileum [Obol]." [OBOL:automatic] synonym: "Ileal mucous membrane" EXACT [FMA:14956] synonym: "Ileum mucosa" EXACT [FMA:14956] synonym: "ileum mucosa" EXACT [OBOL:automatic] synonym: "ileum mucosa of organ" EXACT [OBOL:automatic] synonym: "ileum mucous membrane" EXACT [OBOL:automatic] synonym: "ileum organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of ileum" EXACT [OBOL:automatic] synonym: "mucosa of organ of ileum" EXACT [OBOL:automatic] synonym: "mucous membrane of ileum" EXACT [OBOL:automatic] synonym: "organ mucosa of ileum" EXACT [OBOL:automatic] xref: BTO:0000619 xref: FMA:14956 xref: SCTID:85458007 is_a: UBERON:0000064 ! organ part is_a: UBERON:0001204 ! implied link automatically realized ! mucosa of small intestine relationship: part_of UBERON:0002116 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0002116 ! ileum [Term] id: UBERON:0000332 name: yellow bone marrow alt_id: UBERON:BTO_0000635-FMA_74596 synonym: "fat marrow" RELATED [BTO:0000635] synonym: "medulla ossium flava" RELATED [BTO:0000635] synonym: "yellow marrow" RELATED [BTO:0000635] xref: BTO:0000635 xref: FMA:74596 xref: SCTID:5023006 is_a: UBERON:0002371 ! bone marrow [Term] id: UBERON:0000333 name: intestinal gland alt_id: UBERON:BTO_0000640-FMA_15052 def: "A gland that is part of a intestinal mucosa [Obol]." [OBOL:automatic] comment: TODO check UBERON:0001983 subset: organ_slim synonym: "bowel mucosa gland" EXACT [OBOL:automatic] synonym: "bowel mucosa of organ gland" EXACT [OBOL:automatic] synonym: "bowel mucous membrane gland" EXACT [OBOL:automatic] synonym: "bowel organ mucosa gland" EXACT [OBOL:automatic] synonym: "crypt of Lieberkuehn" RELATED [BTO:0000640] synonym: "gland of bowel mucosa" EXACT [OBOL:automatic] synonym: "gland of bowel mucosa of organ" EXACT [OBOL:automatic] synonym: "gland of bowel mucous membrane" EXACT [OBOL:automatic] synonym: "gland of bowel organ mucosa" EXACT [OBOL:automatic] synonym: "gland of intestinal mucosa" EXACT [OBOL:automatic] synonym: "gland of intestine mucosa" EXACT [OBOL:automatic] synonym: "gland of intestine mucosa of organ" EXACT [OBOL:automatic] synonym: "gland of intestine mucous membrane" EXACT [OBOL:automatic] synonym: "gland of intestine organ mucosa" EXACT [OBOL:automatic] synonym: "gland of Lieberkuehn" RELATED [BTO:0000640] synonym: "gland of mucosa of bowel" EXACT [OBOL:automatic] synonym: "gland of mucosa of intestine" EXACT [OBOL:automatic] synonym: "gland of mucosa of organ of bowel" EXACT [OBOL:automatic] synonym: "gland of mucosa of organ of intestine" EXACT [OBOL:automatic] synonym: "gland of mucous membrane of bowel" EXACT [OBOL:automatic] synonym: "gland of mucous membrane of intestine" EXACT [OBOL:automatic] synonym: "gland of organ mucosa of bowel" EXACT [OBOL:automatic] synonym: "gland of organ mucosa of intestine" EXACT [OBOL:automatic] synonym: "Glandula intestinalis" EXACT [FMA:15052] synonym: "intestinal mucosa gland" EXACT [OBOL:automatic] synonym: "intestine mucosa gland" EXACT [OBOL:automatic] synonym: "intestine mucosa of organ gland" EXACT [OBOL:automatic] synonym: "intestine mucous membrane gland" EXACT [OBOL:automatic] synonym: "intestine organ mucosa gland" EXACT [OBOL:automatic] synonym: "Lieberkuehn`s gland" RELATED [BTO:0000640] synonym: "mucosa of bowel gland" EXACT [OBOL:automatic] synonym: "mucosa of intestine gland" EXACT [OBOL:automatic] synonym: "mucosa of organ of bowel gland" EXACT [OBOL:automatic] synonym: "mucosa of organ of intestine gland" EXACT [OBOL:automatic] synonym: "mucous membrane of bowel gland" EXACT [OBOL:automatic] synonym: "mucous membrane of intestine gland" EXACT [OBOL:automatic] synonym: "organ mucosa of bowel gland" EXACT [OBOL:automatic] synonym: "organ mucosa of intestine gland" EXACT [OBOL:automatic] xref: BTO:0000640 xref: FMA:15052 xref: SCTID:266297002 is_a: UBERON:0002530 ! gland is_a: UBERON:0003408 ! implied link automatically realized ! gland of gut relationship: part_of UBERON:0001242 intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0001242 ! intestinal mucosa relationship: part_of UBERON:0001242 ! intestinal mucosa [Term] id: UBERON:0000341 name: throat alt_id: UBERON:BTO_0000828-FMA_228738 def: "In anatomy, the throat is the anterior part of the neck, in front of the vertebral column. It consists of the pharynx and larynx. An important feature of the throat is the epiglottis, a flap which separates the esophagus from the trachea and prevents inhalation of food or drink. The throat contains various blood vessels, various pharyngeal muscles, the trachea (windpipe) and the esophagus. The hyoid bone and the clavicle are the only bones located in the throat of mammals. It is sometimes considered a synonym for fauces. [WP,unvetted]." [Wikipedia:Throat] xref: BTO:0000828 xref: FMA:228738 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Throat_Diagram.png/200px-Throat_Diagram.png xref: ncithesaurus:Throat xref: OpenCyc:Mx4rwQtO_JwpEbGdrcN5Y29ycA is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0000974 ! neck [Term] id: UBERON:0000344 name: mucosa alt_id: UBERON:BTO_0000886-FMA_85355 def: "A lining of mostly endodermal origin, covered in epithelium, which is involved in absorption and secretion. They line various body cavities that are exposed to the external environment and internal organs. It is at several places continuous with skin: at the nostrils, the lips, the ears, the genital area, and the anus. The sticky, thick fluid secreted by the mucous membranes and gland is termed mucus. The term mucous membrane refers to where they are found in the body and not every mucous membrane secretes mucus[WP]" [Wikipedia:Mucous_membrane] comment: Editor note: - check - mucosa vs region of mucosa. In FMA these are subtypes of Mucosa: Mucosa of gallbladder, tongue, .... The following are subtypes of Region of mucosa: Mucosa of zone of stomach, trachea, bronchus, dorsum of tongue.... Depends on whether the covered area is an organ or organ component. Uberon does not regard organ vs organ component as crucial distinction and thus collapses these into a single class deliberately synonym: "mucosa of organ" EXACT [FMA:85355] synonym: "mucosa of organ part" EXACT [FMA:85358] synonym: "mucosal region" EXACT [FMA:85358] synonym: "mucous membrane" EXACT [FMA:85355] synonym: "organ mucosa" EXACT [FMA:85355] synonym: "region of mucosa" RELATED [FMA:85358] synonym: "tunica mucosa" RELATED [BTO:0000886] xref: AEO:0000199 xref: BTO:0000886 xref: EHDAA2:0003234 xref: EV:0100382 xref: FMA:85355 xref: FMA:85358 xref: GAID:297 xref: galen:Mucosa xref: http://upload.wikimedia.org/wikipedia/en/thumb/4/4e/Ens.png/200px-Ens.png xref: MESH:A.10.615.550 xref: ncithesaurus:Mucosa xref: ncithesaurus:Mucous_Membrane xref: OpenCyc:Mx4rvmKNOpwpEbGdrcN5Y29ycA xref: SCTID:361693009 is_a: UBERON:0004923 ! organ component layer [Term] id: UBERON:0000345 name: myelin alt_id: UBERON:BTO_0000894-FMA_62977 xref: BTO:0000894 xref: FMA:62977 xref: ncithesaurus:Myelin is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0000346 name: myelin membrane alt_id: UBERON:BTO_0000895-FMA_73417 comment: BTO has def The multilamellar myelin membrane is a specisalised lipid-rich domain of the glial cell plasma membrane. FMA has primary term name Myelinated plasma membrane of Schwann cell synonym: "myelinated plasma membrane of Schwann cell" EXACT [FMA:73417] xref: BTO:0000895 xref: FMA:73417 is_a: UBERON:0000470 ! cell part relationship: has_part UBERON:0000345 ! myelin [Term] id: UBERON:0000347 name: myelin sheath alt_id: UBERON:BTO_0000900-FMA_62983 def: "the insulating envelope that surrounds nerve fibers or axons." [MP:0003871] synonym: "medullary sheath" RELATED [BTO:0000900] xref: BTO:0000900 xref: FMA:62983 xref: GAID:731 xref: GO:0043209 xref: MESH:A.08.637.600.500 xref: ncithesaurus:Myelin_Sheath is_a: UBERON:0000470 ! cell part relationship: has_part UBERON:0000345 ! myelin [Term] id: UBERON:0000348 name: ophthalmic nerve alt_id: UBERON:BTO_0000926-FMA_52621 def: "the sensory nerve subdivision of the trigeminal nerve that transmits sensory information from the orbit and its contents, the nasal cavity and the skin of the nose and forehead." [MP:0009798] synonym: "First division of fifth cranial nerve" EXACT [FMA:52621] synonym: "First division of trigeminal nerve" EXACT [FMA:52621] synonym: "Nervus ophthalmicus (V1)" EXACT [FMA:52621] synonym: "Nervus ophthalmicus (Va)" EXACT [FMA:52621] synonym: "nervus ophthalmicus [v1]" EXACT [FMA:52621, FMA:TA] synonym: "nervus ophthalmicus [va]" EXACT [FMA:52621, FMA:TA] synonym: "ophthalmic division" RELATED [BTO:0000926] synonym: "Ophthalmic division [V1]" EXACT [FMA:52621] synonym: "Ophthalmic division [Va]" EXACT [FMA:52621] synonym: "Ophthalmic division of fifth cranial nerve" EXACT [FMA:52621] synonym: "Ophthalmic division of trigeminal nerve (V1)" EXACT [FMA:52621] synonym: "Ophthalmic division of trigeminal nerve (Va)" EXACT [FMA:52621] synonym: "Ophthalmic nerve [V1]" EXACT [FMA:52621] synonym: "Ophthalmic nerve [Va]" EXACT [FMA:52621] synonym: "trigeminal V nerve ophthalmic division" EXACT [MA:0001104] xref: BTO:0000926 xref: EHDAA:3744 xref: EHDAA2:0002088 xref: EMAPA:17800 xref: FMA:52621 xref: GAID:837 xref: MA:0001104 xref: MESH:A.08.800.800.120.760.650 xref: ncithesaurus:Ophthalmic_Nerve xref: OG:0001349 xref: OpenCyc:Mx4rwEs_K5wpEbGdrcN5Y29ycA xref: SCTID:280210000 is_a: UBERON:0001021 ! nerve relationship: branch_of UBERON:0001645 ! trigeminal nerve [Term] id: UBERON:0000349 name: limbic system alt_id: UBERON:BTO_0000928-FMA_242000 def: "A set of midline structures surrounding the brainstem of the mammalian brain, originally described anatomically, e.g., hippocampal formation, amygdala, hypothalamus, cingulate cortex. Although the original designation was anatomical, the limbic system has come to be associated with the system in the brain subserving emotional functions. As such, it is very poorly defined and doesn't correspond closely to the anatomical meaning any longer. [BirnLex]. including the hippocampus, amygdala, anterior thalamic nuclei, and limbic cortex, which support a variety of functions including emotion, behavior, long term memory, and olfaction [Wikipedia]." [BIRNLEX:Limbic_system, Wikipedia:Limbic_system] comment: obsoletion recommended. The current part_of children were chosen as the intersection of what is stated in wikipedia and in the FMA. NIF: We are including Limbic System because it is still used by neuroscientists and others, but as a data annotation term, it is very poor because it is not a clearly defined entity. xref: BTO:0000928 xref: FMA:242000 xref: GAID:615 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5c/Brain_limbicsystem.jpg/200px-Brain_limbicsystem.jpg xref: MESH:A.08.186.211.577 xref: OpenCyc:Mx4rwAeba5wpEbGdrcN5Y29ycA xref: SCTID:361342009 is_a: UBERON:0000467 {source="GO"} ! anatomical system is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001890 ! forebrain [Term] id: UBERON:0000351 name: nuchal ligament alt_id: UBERON:BTO_0000952-FMA_13427 synonym: "Ligament of neck" EXACT [FMA:13427] synonym: "ligamentum nuchae" EXACT [FMA:13427] xref: BTO:0000952 xref: EMAPA:19207 xref: FMA:13427 xref: SCTID:166962007 is_a: UBERON:0000062 ! organ [Term] id: UBERON:0000353 name: parenchyma alt_id: UBERON:BTO_0000999-FMA_45732 def: "functional part of an organ in the body. This is in contrast to the stroma, which refers to the structural tissue of organs, being exactly, connective tissues. Early in development the mammalian embryo has three distinct layers: ectoderm (external layer), endoderm (internal layer) and in between those two layers the middle layer or mesoderm. The parenchyma of most organs is of ectodermal (brain, skin) or endodermal origin (lungs, gastrointestinal tract, liver, pancreas). The parenchyma of a few organs (spleen, kidneys, heart) is of mesodermal origin. The stroma of all organs is of mesodermal origin[WP]." [Wikipedia:Parenchyma] xref: EHDAA:3015 xref: EHDAA:3905 xref: EHDAA:3999 xref: EHDAA:4005 xref: EHDAA:6899 xref: EHDAA:6903 xref: EHDAA:6994 xref: EHDAA:8086 xref: EHDAA:9182 xref: EHDAA:9190 xref: EHDAA:9196 xref: EHDAA:9202 xref: FMA:45732 xref: ncithesaurus:Parenchyma is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0000355 name: pharyngeal mucosa alt_id: UBERON:0003344 alt_id: UBERON:BTO_0001047-FMA_55031 def: "A mucosa that is part of a pharynx [Obol]." [OBOL:automatic] synonym: "mucosa of organ of pharynx" EXACT [OBOL:automatic] synonym: "mucosa of pharynx" EXACT [OBOL:automatic] synonym: "Mucous membrane of pharynx" EXACT [FMA:55031] synonym: "mucous membrane of pharynx" EXACT [OBOL:automatic] synonym: "mucous membrane of the pharynx" RELATED [BTO:0001047] synonym: "organ mucosa of pharynx" EXACT [OBOL:automatic] synonym: "pharynx mucosa" EXACT [OBOL:automatic] synonym: "pharynx mucosa of organ" EXACT [OBOL:automatic] synonym: "pharynx mucous membrane" EXACT [OBOL:automatic] synonym: "pharynx organ mucosa" EXACT [OBOL:automatic] synonym: "tunica mucosa pharyngea" EXACT [FMA:55031, FMA:TA] xref: BTO:0001047 xref: EMAPA:26957 xref: EMAPA:26965 xref: FMA:55031 xref: SCTID:362121003 is_a: UBERON:0000064 ! organ part is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004785 ! implied link automatically realized ! respiratory system mucosa relationship: part_of UBERON:0001042 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001042 ! chordate pharynx [Term] id: UBERON:0000358 name: blastocyst alt_id: UBERON:BTO_0001099-FMA_83041 def: "The mammalian blastocyst is a hollow ball of cells containing two cell types, the inner cell mass and the trophectoderm[GO]." [GO:0001824, Wikipedia:Blastocyst] synonym: "blastula" RELATED [FMA:83041] xref: BTO:0001099 xref: EFO:0000295 xref: EV:0100394 xref: FMA:83041 xref: GAID:1153 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/72/Blastocyst_English.svg/200px-Blastocyst_English.svg.png xref: MESH:A.16.254.085 xref: ncithesaurus:Blastocyst xref: OGEM:000006 xref: SCTID:308837009 is_a: UBERON:0002050 ! embryonic structure relationship: has_part UBERON:0000087 ! inner cell mass [Term] id: UBERON:0000359 name: preputial gland alt_id: UBERON:BTO_0001111-FMA_71652 def: "An exocrine gland that are located in front of the genitals of some mammals (including mice) and produce pheromones[WP]." [Wikipedia:Preputial_gland] subset: organ_slim synonym: "glandulae preputiales" EXACT [FMA:71652, FMA:TA] synonym: "preputial glands" EXACT [FMA:71652] synonym: "preputial glands set" EXACT [FMA:71652] xref: FMA:71652 xref: ncithesaurus:Prepucial_Gland_MMHCC xref: SCTID:278916008 is_a: UBERON:0001821 ! sebaceous gland relationship: secretes UBERON:0003670 ! smegma [Term] id: UBERON:0000360 name: rectal gland alt_id: UBERON:BTO_0001157-FMA_15724 is_obsolete: true consider: UBERON:0004757 consider: UBERON:0004758 consider: UBERON:0004759 consider: UBERON:0004760 [Term] id: UBERON:0000361 name: red bone marrow alt_id: UBERON:BTO_0001160-FMA_74595 synonym: "medulla ossium rubra" RELATED [BTO:0001160] synonym: "red marrow" RELATED [BTO:0001160] xref: BTO:0001160 xref: FMA:74595 xref: SCTID:75330005 is_a: UBERON:0002371 ! bone marrow [Term] id: UBERON:0000362 name: renal medulla alt_id: UBERON:BTO_0001167-FMA_86327 def: "The renal medulla is the innermost part of the kidney. The renal medulla is split up into a number of sections, known as the renal pyramids. Blood enters into the kidney via the renal artery, which then splits up to form the arcuate arterioles. The arcuate arterioles each in turn branch into interlobular arterioles, which finally reach the glomeruli. At the glomerulus the blood reaches a highly disfavourable pressure gradient and a large exchange surface area, which forces the serum portion of the blood out of the vessel into the renal tubules. Flow continues through the renal tubules, including the proximal tubule, the Loop of Henle, and finally leaves the kidney by means of the collecting duct, leading to the renal ureter. The renal medulla (latin renes medulla = kidney middle) contains the structures of the nephrons responsible for maintaining the salt and water balance of the blood. The renal medulla is hypertonic to the filtrate in the nephron and aids in the reabsorption of water. [WP,unvetted]." [Wikipedia:Renal_medulla] synonym: "kidney medulla" EXACT [OBOL:automatic] synonym: "medulla of kidney" EXACT [OBOL:automatic] synonym: "medulla renalis" EXACT [FMA:74268, FMA:TA] synonym: "medullary pyramids" EXACT [FMA:74268] synonym: "pyramides renales" EXACT [FMA:74268, FMA:TA] synonym: "renal marrow" RELATED [BTO:0001167] synonym: "renal medullae" EXACT [FMA:86327] synonym: "renal medullae set" EXACT [FMA:86327] synonym: "renal pyramids" EXACT [FMA:74268] synonym: "renal pyramids set" EXACT [FMA:74268] xref: BTO:0001167 xref: EMAPA:19279 xref: FMA:74268 xref: GAID:425 xref: galen:MedullaOfKidney xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/69/Illu_kidney.jpg/200px-Illu_kidney.jpg xref: MA:0000373 xref: MESH:A.05.810.453.466 xref: ncithesaurus:Renal_Medulla xref: SCTID:30737000 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0000958 ! implied link automatically realized ! medulla is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0002113 intersection_of: UBERON:0000958 ! medulla intersection_of: part_of UBERON:0002113 ! kidney [Term] id: UBERON:0000363 name: reticuloendothelial system alt_id: UBERON:BTO_0001174-FMA_84189 def: "A part of the immune system that consists of the phagocytic cells located in reticular connective tissue. The cells are primarily monocytes and macrophages, and they accumulate in lymph nodes and the spleen. The Kupffer cells of the liver and tissue histiocytes are also part of the RES. A lymphoma of the reticuloendothelial system is called reticuloendotheliosis[WP]." [Wikipedia:Reticuloendothelial_system] synonym: "lymphoreticular" RELATED [BioMart:BioMart] synonym: "lymphoreticular system" EXACT [Wikipedia:Reticuloendothelial_system] synonym: "mononuclear phagocyte system" EXACT [FMA:84189] synonym: "RES" EXACT [Wikipedia:Reticuloendothelial_system] xref: BTO:0001174 xref: EV:0100048 xref: FMA:84189 xref: GAID:1004 xref: MESH:A.15.382.812 xref: ncithesaurus:Reticuloendothelial_System xref: SCTID:278874002 is_a: UBERON:0000467 ! anatomical system relationship: part_of UBERON:0002405 ! immune system [Term] id: UBERON:0000364 name: rootlet alt_id: UBERON:BTO_0001192-FMA_76787 synonym: "fila radicularia" EXACT [FMA:76787, FMA:TA] synonym: "Rootlets" EXACT [FMA:76787] synonym: "Rootlets set" EXACT [FMA:76787] xref: BTO:0001192 xref: FMA:76787 is_obsolete: true [Term] id: UBERON:0000365 name: urothelium alt_id: UBERON:BTO_0001245-FMA_67695 def: "The urothelium is the epithelial tissue layer that lines much of the urinary tract, including the renal pelvis, the ureters, the bladder, and parts of the urethra." [Wikipedia:Urothelium] comment: consider merging with transitional epithelium. MA uses the label 'urothelium' exclusively. FMA uses 'transitional epithelium' and has 'urothelium' as a sibling. FMA also lists 'urothelium' as the only example of 'transitional epithelium' synonym: "uroepithelium" EXACT [FMA:67695] xref: BTO:0003906 xref: EMAPA:28089 xref: FMA:67695 xref: GAID:935 xref: MESH:A.10.272.850 xref: ncithesaurus:Urothelium xref: SCTID:57789003 is_a: UBERON:0005910 ! implied link automatically realized ! transitional epithelium is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0001008 intersection_of: UBERON:0005910 ! transitional epithelium intersection_of: part_of UBERON:0001008 ! excretory system [Term] id: UBERON:0000366 name: flexor muscle alt_id: UBERON:BTO_0001257-FMA_74559 def: "A muscle that when contracted acts to bend a joint or limb in the body." [BTO:0001257] subset: vertebrate_core synonym: "flexor" RELATED [] xref: BTO:0001257 xref: FMA:74559 xref: FMA:74999 xref: ZFA:0005271 is_a: UBERON:0001630 ! muscle organ relationship: part_of UBERON:0004708 ! limb/fin [Term] id: UBERON:0000368 name: adductor brevis alt_id: UBERON:BTO_0001288-FMA_22442 def: "The adductor brevis is a muscle in the thigh situated immediately behind the pectineus and adductor longus. It is somewhat triangular in form, and arises by a narrow origin from the outer surfaces of the superior and inferior rami of the pubis, between the gracilis and obturator externus. Its fibers, passing backward, lateralward, and downward, are inserted, by an aponeurosis, into the line leading from the lesser trochanter to the linea aspera and into the upper part of the linea aspera, immediately behind the pectineus and upper part of the adductor longus.[WP]." [Wikipedia:Adductor_brevis_muscle] synonym: "adductor brevis muscle" EXACT [] synonym: "Musculus adductos brevis" EXACT [FMA:22442] xref: BTO:0001288 xref: FMA:22442 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e2/Anterior_Hip_Muscles_2.PNG/200px-Anterior_Hip_Muscles_2.PNG xref: OpenCyc:Mx4rv13lfJwpEbGdrcN5Y29ycA xref: SCTID:181687007 is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0004252 ! implied link automatically realized ! hindlimb stylopod muscle relationship: part_of UBERON:0000376 ! hindlimb stylopod [Term] id: UBERON:0000369 name: corpus striatum alt_id: UBERON:BTO_0001311-FMA_77616 def: "The corpus striatum (striated body) is a compound structure consisting of the caudate nucleus and the lentiform nucleus, which consists of the putamen and the globus pallidus[WP]." [Wikipedia:Corpus_striatum] comment: The term has been used in a few different ways: * It is a pair of nuclear masses which form the basal ganglia, along with the subthalamic nucleus and the substantia nigra. * It may also refer to both the basal ganglia and internal capsule collectively.[2] * According to the 1917 version of Gray's Anatomy, it is the combination of the lentiform nucleus (also known as the lenticular nucleus) and the caudate nucleus * According to BrainInfo it is a part of the basal ganglia comprising the globus pallidus and striatum synonym: "striate body" RELATED [BTO:0001311] synonym: "striated body" RELATED [BTO:0001311] xref: BTO:0001311 xref: EFO:0000381 xref: EMAPA:17549 xref: EV:0100184 xref: FMA:77616 xref: GAID:667 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b3/Gray656.png/200px-Gray656.png xref: MESH:A.08.186.211.730.885.105.487 xref: ncithesaurus:Corpus_Striatum xref: OG:0001175 xref: SCTID:279318005 is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon relationship: part_of UBERON:0002420 ! basal ganglion [Term] id: UBERON:0000370 name: adductor magnus alt_id: UBERON:BTO_0001312-FMA_22443 def: "The adductor magnus is a large triangular muscle, situated on the medial side of the thigh. The portion which arises from the ischiopubic ramus (a small part of the inferior ramus of the pubis, and the inferior ramus of the ischium) is called the 'adductor magnesius portion', and the portion arising from the tuberosity of the ischium is called the 'hamstring portion'. The hamstring portion is not considered part of the hamstring group of muscles, but it is adjacent to it.[WP]." [Wikipedia:Adductor_magnus_muscle] synonym: "adductor magnus muscle" EXACT [] xref: BTO:0001312 xref: FMA:22443 xref: galen:AdductorMagnus xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e2/Anterior_Hip_Muscles_2.PNG/200px-Anterior_Hip_Muscles_2.PNG xref: OpenCyc:Mx4rvuSd6JwpEbGdrcN5Y29ycA xref: SCTID:181688002 is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0004252 ! implied link automatically realized ! hindlimb stylopod muscle relationship: part_of UBERON:0000376 ! hindlimb stylopod [Term] id: UBERON:0000371 name: syncytiotrophoblast alt_id: UBERON:BTO_0001335-FMA_83040 def: "outer syncytial layer of the trophoblast." [Wikipedia:Syncytiotrophoblast] synonym: "syncytial trophoblast" EXACT [FMA:83040] synonym: "syntrophoblast" RELATED [] synonym: "syntrophoblast layer" EXACT [ISBN10:0073040584 "Vertebrates, Kardong"] xref: BTO:0001335 xref: EHDAA:129 xref: EHDAA:91 xref: EMAPA:16068 xref: FMA:83040 xref: ncithesaurus:Syncytiotrophoblast xref: SCTID:256965005 is_a: UBERON:0002050 {source="FMA"} ! embryonic structure relationship: part_of UBERON:0000088 {source="BTO"} ! trophoblast relationship: part_of UBERON:0004364 {source="EMAPA"} ! ectoplacental cone [Term] id: UBERON:0000372 name: extensor digitorum brevis alt_id: UBERON:BTO_0001337-FMA_51140 def: "a muscle on the upper surface of the foot that helps extend digits 2 through 4." [Wikipedia:Extensor_digitorum_brevis_muscle] synonym: "extensor digitorum brevis muscle" EXACT [] xref: BTO:0001337 xref: FMA:51140 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5f/Gray1241.png/200px-Gray1241.png xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Gray441.png/200px-Gray441.png is_a: UBERON:0000311 {source="BTO"} ! extensor muscle is_a: UBERON:0001498 ! implied link automatically realized ! muscle of foot relationship: part_of UBERON:0002387 ! foot [Term] id: UBERON:0000373 name: tapetum of corpus callosum alt_id: UBERON:BTO_0001350-FMA_77208 def: "On either side of the corpus collosum, the fibers radiate in the white substance and pass to the various parts of the cerebral cortex; those curving forward from the genu into the frontal lobe constitute the forceps anterior, and those curving backward into the occipital lobe, the forceps posterior. Between these two parts is the main body of the fibers which constitute the tapetum and extend laterally on either side into the temporal lobe, and cover in the central part of the lateral ventricle. [Wikipedia via Greys]" [Wikipedia:Tapetum_of_corpus_callosum] comment: not to be confused with BTO:0001350 or GO:0048655-tapetal layer morphogenesis synonym: "tapetum" BROAD INCONSISTENT [FMA:77208] xref: FMA:77208 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/aa/Gray733.png/200px-Gray733.png xref: SCTID:279312006 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0000375 name: mandibular nerve alt_id: UBERON:BTO_0001375-FMA_52996 def: "the motor and sensory nerve subdivision of the trigeminal nerve that transmits sensory information from the auricle, the external acoustic meatus, tympanic membrane, temporal region, the cheek, the skin overlying the mandible, the anterior portion of the tongue, the floor of the mouth, lower teeth and gingiva and transmits motor information from the muscles of mastication, the mylohyoid muscle and digastric muscle and the muscles tensor tympani and tensor veli palatini." [MP:0009800, Wikipedia:Mandibular_nerve] synonym: "Inferior maxillary nerve" EXACT [FMA:52996] synonym: "Mandibular division [V3]" EXACT [FMA:52996] synonym: "Mandibular division [Vc]" EXACT [FMA:52996] synonym: "Mandibular division of fifth cranial nerve" EXACT [FMA:52996] synonym: "Mandibular division of trigeminal nerve [Vc; V3]" EXACT [FMA:52996] synonym: "Mandibular nerve [V3]" EXACT [FMA:52996] synonym: "Mandibular nerve [Vc]" EXACT [FMA:52996] synonym: "nervus mandibularis" RELATED [BTO:0001375] synonym: "nervus mandibularis [v3]" EXACT [FMA:52996, FMA:TA] synonym: "Nervus mandibularis [Vc; V3]" EXACT [FMA:52996] synonym: "nervus mandibularis [vc]" EXACT [FMA:52996, FMA:TA] synonym: "Third division of fifth cranial nerve" EXACT [FMA:52996] synonym: "Third division of trigeminal nerve" EXACT [FMA:52996] synonym: "trigeminal V nerve mandibular division" EXACT [MA:0001101] xref: BTO:0001375 xref: EHDAA2:0002086 xref: FMA:52996 xref: GAID:834 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4d/Gray781.png/200px-Gray781.png xref: MA:0001101 xref: MESH:A.08.800.800.120.760.500 xref: ncithesaurus:Inferior_Maxillary_Nerve xref: OG:0001345 xref: OpenCyc:Mx4rvcQKSpwpEbGdrcN5Y29ycA xref: SCTID:280212008 is_a: UBERON:0000063 ! organ segment is_a: UBERON:0001021 ! nerve is_a: UBERON:0004732 ! implied link automatically realized ! segmental subdivision of nervous system relationship: branch_of UBERON:0001645 ! trigeminal nerve [Term] id: UBERON:0000376 name: hindlimb stylopod alt_id: UBERON:BTO_0001376-FMA_24967 def: "In humans the thigh is the area between the pelvis and the knee. Anatomically, it is part of the lower limb. The single bone in the thigh is called the femur. This bone is very thick and strong (due to the high proportion of cortical bone), and forms a ball and socket joint at the hip, and a condylar joint at the knee. [WP,unvetted]." [Wikipedia:Thigh] synonym: "hind limb stylopod" EXACT [OBOL:automatic] synonym: "hindlimb stylopod" EXACT [OBOL:automatic] synonym: "hindlimb stylopodium" EXACT [OBOL:automatic] synonym: "inferior member stylopod" EXACT [OBOL:automatic] synonym: "lower extremity stylopod" EXACT [OBOL:automatic] synonym: "Proximal segment of free lower limb" EXACT [FMA:24967] synonym: "stylopod of hind limb" EXACT [OBOL:automatic] synonym: "stylopod of hindlimb" EXACT [OBOL:automatic] synonym: "stylopod of inferior member" EXACT [OBOL:automatic] synonym: "stylopod of lower extremity" EXACT [OBOL:automatic] synonym: "stylopod of lower limb" EXACT [] synonym: "thigh" EXACT [] synonym: "upper leg" EXACT [MA:0000052] xref: BTO:0001376 xref: EFO:0001943 xref: EHDAA:5171 xref: EHDAA:6200 xref: EHDAA2:0002130 xref: EMAPA:17499 xref: FMA:24967 xref: GAID:50 xref: galen:Thigh xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4b/Gray1238.png/200px-Gray1238.png xref: MA:0000052 xref: MESH:A.01.378.610.750 xref: ncithesaurus:Thigh xref: OG:0000349 xref: OpenCyc:Mx4rvVjN7JwpEbGdrcN5Y29ycA xref: SCTID:302544002 is_a: UBERON:0002472 ! stylopod is_a: UBERON:0008784 ! implied link automatically realized ! lower limb segment relationship: part_of UBERON:0002103 intersection_of: UBERON:0002472 ! stylopod intersection_of: part_of UBERON:0002103 ! hindlimb relationship: part_of UBERON:0000978 ! leg [Term] id: UBERON:0000377 name: maxillary nerve alt_id: UBERON:BTO_0001378-FMA_52724 def: "the sensory nerve subdivision of the trigeminal nerve that transmits sensory information from the palate, upper teeth and gingiva, the skin between the palpebral fissure and the mouth, and from the nasal cavity and maxillary sinuses." [MP:0009799, Wikipedia:Maxillary_nerve] synonym: "Maxillary division [V2]" EXACT [FMA:52724] synonym: "Maxillary division [Vb]" EXACT [FMA:52724] synonym: "Maxillary division of fifth cranial nerve" EXACT [FMA:52724] synonym: "Maxillary division of trigeminal nerve (Vb; V2)" EXACT [FMA:52724] synonym: "Maxillary nerve [V2]" EXACT [FMA:52724] synonym: "Maxillary nerve [Vb]" EXACT [FMA:52724] synonym: "nervus maxillaris" RELATED [BTO:0001378] synonym: "Nervus maxillaris (Vb; V2)" EXACT [FMA:52724] synonym: "nervus maxillaris [v2]" EXACT [FMA:52724, FMA:TA] synonym: "nervus maxillaris [vb]" EXACT [FMA:52724, FMA:TA] synonym: "Second division of fifth cranial nerve" EXACT [FMA:52724] synonym: "Second division of trigeminal nerve" EXACT [FMA:52724] synonym: "trigeminal V nerve maxillary division" EXACT [MA:0001103] xref: BTO:0001378 xref: EHDAA2:0002087 xref: FMA:52724 xref: GAID:836 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a9/Gray779.png/200px-Gray779.png xref: MA:0001103 xref: MESH:A.08.800.800.120.760.550 xref: OG:0001346 xref: OpenCyc:Mx4rvWNU9JwpEbGdrcN5Y29ycA xref: SCTID:280211001 is_a: UBERON:0000063 ! organ segment is_a: UBERON:0001021 ! nerve is_a: UBERON:0004732 ! implied link automatically realized ! segmental subdivision of nervous system relationship: branch_of UBERON:0001645 ! trigeminal nerve [Term] id: UBERON:0000378 name: tongue muscle alt_id: UBERON:BTO_0001386-FMA_46689 def: "the muscular portion of the tongue." [MP:0004136, Wikipedia:Muscles_of_tongue] synonym: "muscle of tongue" EXACT [FMA:46689] xref: BTO:0001386 xref: FMA:46689 xref: ncithesaurus:Tongue_Muscle xref: SCTID:244781004 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0002376 ! implied link automatically realized ! muscle of head relationship: part_of UBERON:0001723 intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0001723 ! tongue [Term] id: UBERON:0000379 name: tracheal mucosa alt_id: UBERON:BTO_0001390-FMA_7471 synonym: "mucosa of organ of trachea" EXACT [OBOL:automatic] synonym: "mucosa of organ of windpipe" EXACT [OBOL:automatic] synonym: "mucosa of trachea" EXACT [OBOL:automatic] synonym: "mucosa of windpipe" EXACT [OBOL:automatic] synonym: "Mucous membrane of trachea" EXACT [FMA:7471] synonym: "mucous membrane of trachea" EXACT [OBOL:automatic] synonym: "mucous membrane of windpipe" EXACT [OBOL:automatic] synonym: "organ mucosa of trachea" EXACT [OBOL:automatic] synonym: "organ mucosa of windpipe" EXACT [OBOL:automatic] synonym: "trachea mucosa" EXACT [OBOL:automatic] synonym: "trachea mucosa of organ" EXACT [OBOL:automatic] synonym: "trachea mucous membrane" EXACT [OBOL:automatic] synonym: "trachea organ mucosa" EXACT [OBOL:automatic] synonym: "Tracheal mucous membrane" EXACT [FMA:7471] synonym: "Tunica mucosa (tracheae)" EXACT [FMA:7471] synonym: "tunica mucosa tracheae" EXACT [FMA:7471, FMA:TA] synonym: "windpipe mucosa" EXACT [OBOL:automatic] synonym: "windpipe mucosa of organ" EXACT [OBOL:automatic] synonym: "windpipe mucous membrane" EXACT [OBOL:automatic] synonym: "windpipe organ mucosa" EXACT [OBOL:automatic] xref: BTO:0001390 xref: FMA:7471 xref: SCTID:660006 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004785 ! implied link automatically realized ! respiratory system mucosa relationship: part_of UBERON:0001005 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001005 ! respiratory airway [Term] id: UBERON:0000380 name: tuber alt_id: UBERON:BTO_0001400-FMA_75430 comment: undefined in FMA. BTO and MIAA refers to plant structure only xref: BTO:0001400 xref: EFO:0001015 xref: FMA:75430 xref: OpenCyc:Mx4raeDj5Cw8QdiT7e8pb2JzAA is_obsolete: true [Term] id: UBERON:0000381 name: detrusor alt_id: UBERON:BTO_0001453-FMA_68018 def: "The outer largely longitudinally arranged musculature of the bladder wall[BTO]. The fibers of the detrusor muscle arise from the posterior surface of the body of the pubis in both sexes (musculi pubovesicales), and in the male from the adjacent part of the prostate and its capsule. These fibers pass, in a more or less longitudinal manner, up the inferior surface of the bladder, over its apex, and then descend along its fundus to become attached to the prostate in the male, and to the front of the vagina in the female. At the sides of the bladder the fibers are arranged obliquely and intersect one another[WP]." [BTO:0001453, Wikipedia:Detrusor_urinae_muscle] synonym: "detrusor muscle" EXACT [BTO:0001453] synonym: "detrusor muscle of bladder" EXACT [EMAPA:28637] synonym: "detrusor urinae muscle" EXACT [Wikipedia:Detrusor_urinae_muscle] synonym: "muscularis propria of the urinary bladder" EXACT [Wikipedia:Detrusor_urinae_muscle] synonym: "urinary bladder detrussor smooth muscle" RELATED [MA:0001698] xref: BTO:0001453 xref: EMAPA:28637 xref: FMA:68018 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/57/Illu_bladder.jpg/200px-Illu_bladder.jpg xref: MA:0001698 is_a: UBERON:0001135 ! smooth muscle tissue is_a: UBERON:0004228 ! implied link automatically realized ! urinary bladder smooth muscle relationship: part_of UBERON:0001256 ! wall of urinary bladder [Term] id: UBERON:0000382 name: apocrine sweat gland alt_id: UBERON:BTO_0001458-FMA_59155 def: "Apocrine sweat glands are sweat glands composed of a coiled secretory portion located at the junction of the dermis and subcutaneous fat, from which a straight portion inserts and secretes into the infundibular portion of the hair follicle. In humans, apocrine sweat glands are found only in certain locations of the body: the axillae (armpits), the areola of the nipples, and the genitoanal region. The ducts of apocrine glands open into the canals of hair follicles. The stimulus for the secretion of apocrine sweat glands is adrenaline, which is a hormone carried in the blood[WP]." [Wikipedia:Apocrine_sweat_glands] comment: A note of confusion is the difference between apocrine secretion and apocrine sweat gland. Apocrine secretion refers to the apical loss of a cell's membrane to create cell blebs, thus creating a secretory product. Apocrine sweat gland refers to a structure, not a secretion process. Apocrine sweat glands actually use a merocrine type secretion, or that mediated by exocytosis of secretory granules. When "apocrine gland" is used without the word sweat, it is often referring to the gland which uses merocrine secretion, and not the secretion method. The important difference in apocrine sweat gland structure is its larger lumen, compared to the more narrow lumen of the eccrine sweat gland. subset: organ_slim xref: BTO:0001458 xref: FMA:59155 xref: MESH:A.10.336.899.206 xref: ncithesaurus:Apocrine_Sweat_Gland xref: SCTID:399916008 is_a: UBERON:0001820 ! sweat gland is_a: UBERON:0008974 ! apocrine gland [Term] id: UBERON:0000383 name: musculature of body alt_id: UBERON:BTO_0001485-FMA_72954 def: "The sum of all muscles in the body. There is only one set of muscles per organism" [GOC:cjm] comment: we place the MA term musculature here, rather than under uberon:musculature, as this seems more appropriate given the structure of MA synonym: "muscle system" EXACT [] synonym: "muscle system of body" EXACT [] synonym: "muscular system" EXACT [FMA:72954] synonym: "musculature system" EXACT [BILA:0000088] synonym: "muskelsystem" RELATED [BTO:0001485] synonym: "set of all muscles" EXACT [FMA:72954] synonym: "Set of muscles of body" EXACT [FMA:72954] synonym: "vertebrate muscular system" EXACT [BTO:0001369] xref: AAO:0000307 xref: BILA:0000088 xref: BTO:0001369 xref: BTO:0001485 xref: EFO:0000801 xref: FBbt:00005069 xref: FMA:72954 xref: MA:0002888 xref: MAT:0000025 xref: MIAA:0000025 xref: VAO:0000033 xref: XAO:0004042 is_a: UBERON:0000467 ! anatomical system is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0002204 ! musculoskeletal system [Term] id: UBERON:0000385 name: labial gland alt_id: UBERON:BTO_0001548-FMA_71613 comment: the label 'labial gland' refers to two distinct classes. From the BTO def: 1. One of the small tubular mucous and serous glands lying beneath the mucous membrane of the lips.n2. A salivary gland, or modification thereof, opening at the base of the labium in certain insects. synonym: "glandulae labiales" EXACT [FMA:71613, FMA:TA] synonym: "Labial glands" EXACT [FMA:71613] synonym: "Labial glands set" EXACT [FMA:71613] xref: BTO:0001548 xref: FMA:71613 xref: HAO:0000449 is_obsolete: true [Term] id: UBERON:0000387 name: meniscus alt_id: UBERON:BTO_0001592-FMA_76690 def: "crescent-shaped fibrocartilaginous structure present in the knee, acromioclavicular, sternoclavicular, and temporomandibular joints[2] that, in contrast to articular disks, only partly divides a joint cavity.[3] A small meniscus also occurs in the radio-carpal joint." [Wikipedia:Meniscus_(anatomy)] synonym: "articular disc" EXACT [FMA:76690] xref: BTO:0001592 xref: EV:0100145 xref: FMA:76690 xref: galen:Meniscus xref: ncithesaurus:Meniscus is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0000388 name: epiglottis alt_id: UBERON:BTO_0001628-FMA_55130 def: "a flap of elastic cartilage tissue covered with a mucous membrane, attached to the entrance of the larynx. It projects obliquely upwards behind the tongue and the hyoid bone, pointing dorsally." [Wikipedia:Epiglottis] comment: todo - epiglottis vs epiglottis cartilage xref: BTO:0001628 xref: EHDAA2:0004081 xref: EMAPA:18289 xref: FMA:55130 xref: GAID:111 xref: MESH:A.02.165.507.411 xref: ncithesaurus:Epiglottis xref: OpenCyc:Mx4rvVjxE5wpEbGdrcN5Y29ycA xref: SCTID:245502004 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001051 ! hypopharynx [Term] id: UBERON:0000389 name: lens cortex alt_id: UBERON:BTO_0001632-FMA_58970 synonym: "cortex of lens" EXACT [FMA:58970] xref: BTO:0001632 xref: FMA:58970 xref: MESH:A.09.371.509.225 xref: SCTID:280626006 is_a: UBERON:0001851 ! cortex is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0000965 ! lens [Term] id: UBERON:0000390 name: lens nucleus alt_id: UBERON:BTO_0001633-FMA_58971 def: "The core of the crystalline lens, surrounded by the cortex." [BTO:0001633] comment: editor note: needs checked; cf nucleus in GO synonym: "nucleus of lens" EXACT [FMA:58971] xref: BTO:0001633 xref: FMA:58971 xref: MESH:A.09.371.509.670 xref: SCTID:280628007 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0000965 ! lens [Term] id: UBERON:0000391 name: leptomeninx alt_id: UBERON:BTO_0001634-FMA_231515 def: "pia mater or arachnoid mater." [Wikipedia:Leptomeninges] subset: organ_slim synonym: "arachnoidea mater et pia mater" RELATED [BTO:0001634] synonym: "leptomeninges" EXACT [NIF_GrossAnatomy:nlx_anat_090207] synonym: "pia-arachnoid" RELATED [BTO:0001634] xref: BTO:0001634 xref: FMA:231515 xref: ncithesaurus:Leptomeninges xref: NIF_GrossAnatomy:nlx_anat_090207 xref: SCTID:362303006 is_a: UBERON:0002360 ! meninx relationship: develops_from UBERON:0007646 ! endomeninx [Term] id: UBERON:0000392 name: longissimus alt_id: UBERON:BTO_0001648-FMA_77178 def: "The longissimus is the muscle lateral to the semispinalis. It is the longest subdivision of the sacrospinalis that extends forward into the transverse processes of the posterior cervical vertebrae. [WP,unvetted]." [Wikipedia:Longissimus] synonym: "musculus longissimus" RELATED [BTO:0001648] xref: BTO:0001648 xref: FMA:77178 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1f/Longissimus.png/200px-Longissimus.png is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0000395 name: cochlear ganglion alt_id: UBERON:BTO_0001688-FMA_53445 def: "group of nerve cells that serve the sense of hearing by sending a representation of sound from the cochlea to the brain. The cell bodies of the spiral ganglion neurons are found in the spiral structure of the cochlea[WP]. the group of nerve cell bodies that conveys auditory sensation from the organ of Corti to the hindbrain and resides on the cochlear part of the vestibulocochlear nerve (eighth cranial nerve)[MP]." [MP:0002855, Wikipedia:Spiral_ganglion] synonym: "Corti's ganglion" EXACT [FMA:53445] synonym: "ganglion cochlearis" RELATED [BTO:0001688] synonym: "ganglion of Corti" EXACT [FMA:53445] synonym: "ganglion spirale cochleae" RELATED [BTO:0001688] synonym: "spiral ganglion" EXACT [FMA:53445] synonym: "spiral ganglion of cochlea" RELATED [BTO:0001688] synonym: "vestibulocochlear VIII ganglion cochlear component" EXACT [MA:0001085] xref: BTO:0001688 xref: EHDAA2:0002198 xref: FMA:53445 xref: GAID:722 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b1/Gray903.png/200px-Gray903.png xref: MA:0001085 xref: MESH:A.08.340.390.800 xref: OG:0001183 xref: SCTID:368955007 is_a: UBERON:0001714 ! ganglion of cranial nerve [Term] id: UBERON:0000396 name: vallate papilla alt_id: UBERON:0002927 alt_id: UBERON:BTO_0001705-FMA_71449 alt_id: UBERON:NIF_GrossAnatomy_birnlex_4106_2-MA_0001594 def: "Any one of the largest papilla of the tongue, 8 to 12 in number, arranged in the form of a V anterior to the sulcus terminalis of the tongue" [BTO:0001705, Wikipedia:Circumvallate_papilla] synonym: "circumvallate papilla" EXACT [MA:0001594] synonym: "circumvallate papilla of tongue" EXACT [FMA:54822] synonym: "circumvallate papilla of tongue" EXACT [] synonym: "papilla vallatae" EXACT PLURAL [FMA:71449, FMA:TA] synonym: "Vallate papilla of tongue" EXACT [] xref: BTO:0001705 xref: EMAPA:18271 xref: EMAPA:18654 xref: EMAPA:18871 xref: FMA:54822 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6c/Gray1015.png/200px-Gray1015.png xref: MA:0001594 xref: ncithesaurus:Circumvallate_Papilla xref: NIF_GrossAnatomy:birnlex_4106_2 is_a: UBERON:0001726 ! papilla of tongue [Term] id: UBERON:0000397 name: colonic epithelium alt_id: UBERON:BTO_0001709-FMA_17302 def: "An epithelium that is part of a colon [Obol]." [OBOL:automatic] subset: vertebrate_core synonym: "colon epithelial tissue" EXACT [OBOL:automatic] synonym: "Colon epithelium" EXACT [FMA:17302] synonym: "colon epithelium" EXACT [OBOL:automatic] synonym: "epithelial tissue of colon" EXACT [OBOL:automatic] synonym: "epithelial tissue of large bowel" EXACT [OBOL:automatic] synonym: "epithelium of colon" EXACT [OBOL:automatic] synonym: "epithelium of large bowel" EXACT [OBOL:automatic] synonym: "large bowel epithelial tissue" EXACT [OBOL:automatic] synonym: "large bowel epithelium" EXACT [OBOL:automatic] synonym: "posterior intestine epithelium" EXACT [ZFA:0005128] xref: BTO:0001709 xref: FMA:17302 xref: SCTID:42978003 xref: ZFA:0005128 is_a: UBERON:0000483 ! epithelium is_a: UBERON:0001278 ! implied link automatically realized ! epithelium of large intestine relationship: part_of UBERON:0001155 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001155 ! colon [Term] id: UBERON:0000398 name: sternal cartilage alt_id: UBERON:BTO_0001721-FMA_32567 synonym: "cartilage of sternum" EXACT [FMA:32567] synonym: "cartilago costalis" RELATED [BTO:0001721] xref: BTO:0001721 xref: FMA:32567 is_a: UBERON:0002418 ! implied link automatically realized ! cartilage tissue is_a: UBERON:0003837 ! implied link automatically realized ! thoracic segment connective tissue relationship: part_of UBERON:0000975 intersection_of: UBERON:0002418 ! cartilage tissue intersection_of: part_of UBERON:0000975 ! sternum [Term] id: UBERON:0000399 name: jejunal mucosa alt_id: UBERON:0003349 alt_id: UBERON:BTO_0001742-FMA_14949 def: "A mucosa that is part of a jejunum [Obol]." [OBOL:automatic] synonym: "jejunal mucous membrane" EXACT [FMA:14949] synonym: "jejunum mucosa" EXACT [FMA:14949] synonym: "jejunum mucosa of organ" EXACT [OBOL:automatic] synonym: "jejunum mucous membrane" EXACT [OBOL:automatic] synonym: "jejunum organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of jejunum" EXACT [FMA:14949] synonym: "mucosa of organ of jejunum" EXACT [OBOL:automatic] synonym: "mucous membrane of jejunum" EXACT [OBOL:automatic] synonym: "organ mucosa of jejunum" EXACT [OBOL:automatic] xref: BTO:0001742 xref: EMAPA:27109 xref: EMAPA:27347 xref: FMA:14949 xref: SCTID:362151009 is_a: UBERON:0000064 ! organ part is_a: UBERON:0001204 ! implied link automatically realized ! mucosa of small intestine relationship: part_of UBERON:0002115 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0002115 ! jejunum [Term] id: UBERON:0000400 name: jejunal epithelium alt_id: UBERON:BTO_0001743-FMA_17232 xref: BTO:0001743 xref: FMA:17232 xref: SCTID:57300004 is_a: UBERON:0001902 {source="BTO"} ! epithelium of small intestine relationship: part_of UBERON:0002115 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002115 ! jejunum relationship: part_of UBERON:0008343 {source="FMA"} ! intestinal villus of jejunum [Term] id: UBERON:0000401 name: mandibular ramus alt_id: UBERON:BTO_0001751-FMA_52828 def: "The ramus of the mandible (perpendicular portion) is quadrilateral in shape, and has two surfaces, four borders, and two processes[WP]." [Wikipedia:Ramus_of_the_mandible] synonym: "lower ramus" RELATED [Wikipedia:Ramus_of_the_mandible] synonym: "mandible ramus" EXACT [MA:0002815] synonym: "rami mandibulae" RELATED PLURAL [Wikipedia:Ramus_of_the_mandible] synonym: "ramus mandibulae" RELATED PLURAL [Wikipedia:Ramus_of_the_mandible] synonym: "ramus of mandible" EXACT [FMA:52828] xref: BTO:0001751 xref: EMAPA:25100 xref: FMA:52828 xref: MA:0002815 xref: SCTID:361739000 is_a: UBERON:0000064 ! organ part is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure relationship: part_of UBERON:0001684 ! mandible [Term] id: UBERON:0000402 name: nasal vestibule alt_id: UBERON:BTO_0001761-FMA_59644 def: "The nasal vestibule is the most anterior part of the nasal cavity. It's enclosed by the cartilages of nose and lined by the same epithelium of the skin. The other part of the nasal cavity, which is lined by the respiratory epithelium, is called nasal cavity proper. [WP,unvetted]." [Wikipedia:Nasal_vestibule] synonym: "vestibular part of nasal cavity" EXACT [FMA:59644] synonym: "vestibulum nasale" RELATED [BTO:0001761] synonym: "vestibulum nasi" RELATED [BTO:0001761] xref: BTO:0001761 xref: FMA:59644 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7c/Gray994.png/200px-Gray994.png xref: SCTID:278940000 is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0001707 ! nasal cavity [Term] id: UBERON:0000403 name: scalp alt_id: UBERON:BTO_0001809-FMA_46494 def: "The scalp is the anatomical area bordered by the face anteriorly and the neck to the sides and posteriorly. [WP,unvetted]." [Wikipedia:Scalp] xref: BTO:0001809 xref: FMA:46494 xref: GAID:80 xref: galen:Scalp xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/eb/Double_cowlick.jpg/200px-Double_cowlick.jpg xref: MESH:A.01.456.810 xref: OpenCyc:Mx4rwNtaz5wpEbGdrcN5Y29ycA xref: SCTID:181480002 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0000407 name: sympathetic trunk alt_id: UBERON:BTO_0001834-FMA_6258 def: "One of a a paired bundle of nerve fibers that run from the base of the skull to the coccyx." [Wikipedia:Sympathetic_trunk] synonym: "gangliated cord" EXACT [Wikipedia:Sympathetic_trunk] synonym: "sympathetic chain" EXACT [FMA:6258] synonym: "sympathetic ganglionic chain" EXACT [Wikipedia:Sympathetic_trunk] xref: AAO:0010791 xref: BTO:0001834 xref: EV:0100374 xref: FMA:6258 xref: SCTID:181099004 xref: XAO:0000211 is_a: UBERON:0000062 ! organ is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0000013 ! sympathetic nervous system [Term] id: UBERON:0000408 name: vertebral ganglion alt_id: UBERON:BTO_0001835-FMA_6572 synonym: "Intermediate ganglion" EXACT [FMA:6572] xref: BTO:0001835 xref: FMA:6572 xref: SCTID:176596009 is_a: UBERON:0000063 ! organ segment is_a: UBERON:0004732 ! implied link automatically realized ! segmental subdivision of nervous system relationship: part_of UBERON:0001991 ! cervical ganglion [Term] id: UBERON:0000409 name: serous gland alt_id: UBERON:BTO_0001837-FMA_62889 def: "glands that secrete watery albuminous material that often contains enzymes." [MP:0008052] subset: organ_slim xref: BTO:0001837 xref: FMA:62889 is_a: UBERON:0002365 ! exocrine gland [Term] id: UBERON:0000410 name: bronchial mucosa alt_id: UBERON:BTO_0001846-FMA_62652 def: "A mucosa that is part of a bronchus [Obol]." [OBOL:automatic] synonym: "bronchi mucosa" EXACT [OBOL:automatic] synonym: "bronchi mucosa of organ" EXACT [OBOL:automatic] synonym: "bronchi mucous membrane" EXACT [OBOL:automatic] synonym: "bronchi organ mucosa" EXACT [OBOL:automatic] synonym: "bronchial trunk mucosa" EXACT [OBOL:automatic] synonym: "bronchial trunk mucosa of organ" EXACT [OBOL:automatic] synonym: "bronchial trunk mucous membrane" EXACT [OBOL:automatic] synonym: "bronchial trunk organ mucosa" EXACT [OBOL:automatic] synonym: "bronchus mucosa" EXACT [OBOL:automatic] synonym: "bronchus mucosa of organ" EXACT [OBOL:automatic] synonym: "bronchus mucous membrane" EXACT [OBOL:automatic] synonym: "bronchus organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of bronchi" EXACT [OBOL:automatic] synonym: "mucosa of bronchial trunk" EXACT [OBOL:automatic] synonym: "mucosa of bronchus" EXACT [OBOL:automatic] synonym: "mucosa of organ of bronchi" EXACT [OBOL:automatic] synonym: "mucosa of organ of bronchial trunk" EXACT [OBOL:automatic] synonym: "mucosa of organ of bronchus" EXACT [OBOL:automatic] synonym: "mucous membrane of bronchi" EXACT [OBOL:automatic] synonym: "mucous membrane of bronchial trunk" EXACT [OBOL:automatic] synonym: "Mucous membrane of bronchus" EXACT [FMA:62652] synonym: "mucous membrane of bronchus" EXACT [OBOL:automatic] synonym: "organ mucosa of bronchi" EXACT [OBOL:automatic] synonym: "organ mucosa of bronchial trunk" EXACT [OBOL:automatic] synonym: "organ mucosa of bronchus" EXACT [OBOL:automatic] synonym: "tunica mucosa bronchi" EXACT [FMA:62652, FMA:TA] xref: BTO:0001846 xref: FMA:62652 xref: SCTID:30802009 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure is_a: UBERON:0004785 ! implied link automatically realized ! respiratory system mucosa relationship: part_of UBERON:0002185 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0002185 ! bronchus [Term] id: UBERON:0000411 name: visual cortex alt_id: UBERON:BTO_0001857-FMA_242644 def: "Area of the occipital lobe concerned with vision." [MESH:A.08.186.211.730.885.213.571.735] comment: Editor note: merge with primary visual cortex? FMA and BTO treat as distinct synonym: "striate cortex" RELATED [MESH:A.08.186.211.730.885.213.571.735] synonym: "V1" RELATED [Wikipedia:Visual_cortex] xref: BTO:0001857 xref: EFO:0000916 xref: EV:0100171 xref: FMA:242644 xref: GAID:679 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/70/Brodmann_areas_17_18_19.png/200px-Brodmann_areas_17_18_19.png xref: MESH:A.08.186.211.730.885.213.571.735 is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0002021 {source="BTO"} ! occipital lobe [Term] id: UBERON:0000412 name: dermal papilla alt_id: UBERON:BTO_0001858-FMA_70737 def: "small, nipple-like extensions (or interdigitations) of the dermis into the epidermis. They can be observed at the surface of the skin in hands and feet as epidermal or papillary ridges (colloquially known as fingerprints). The dermal papillae nourishes all hair follicles and bring food and oxygen to the lower layers of epidermal cells. The pattern of ridges they produce in hands and feet are inherited features that are developed before birth. They remain unaltered (except size) throughout life, and are therefore used for fingerprints. The dermal papillae are part of the uppermost layer of the dermis, the papillary dermis, and the ridges they form greatly increase the surface area between the dermis and epidermis. Because the dermis' main function is to support the epidermis, this greatly increases the exchange of oxygen, nutrients, and waste products between these two layers. Additionally, the increase in surface area prevent the dermal and epidermal layers from separating from each others by strengthening the junction between them. With age, the papillae tend to flatten and sometimes increase in numbers. Dermal papillae also play a pivotal role in hair formation, growth and, cycling" [Wikipedia:Dermal_papillae] synonym: "dermal papilla cell" RELATED [BTO:0001858] synonym: "dermal papillae" EXACT PLURAL [] synonym: "DPC" RELATED [BTO:0001858] synonym: "follicular papilla" EXACT [FMA:70737] synonym: "hair follicle dermal papilla" RELATED [MP:0010687] synonym: "papilla corii" RELATED [BTO:0001858] synonym: "papilla dermatis" RELATED [BTO:0001858] synonym: "papilla dermis" RELATED [BTO:0001858] synonym: "papilla of corium" RELATED [BTO:0001858] synonym: "skin papilla" RELATED [BTO:0001858] xref: BTO:0001858 xref: FMA:70737 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/34/Skin.jpg/200px-Skin.jpg xref: ncithesaurus:Dermal_Papilla xref: SCTID:320101005 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001992 ! papillary layer of dermis [Term] id: UBERON:0000414 name: mucous gland alt_id: UBERON:BTO_0001979-FMA_62888 def: "Mucous glands, found in several different parts of the body, typically stain lighter than serous glands during standard histological preparation. Most are multicellular, but goblet cell are single-celled glands. [WP,unvetted]." [Wikipedia:Mucous_gland] subset: organ_slim synonym: "glandula mucosa" RELATED [BTO:0001979] synonym: "muciparous gland" RELATED [BTO:0001979] xref: AAO:0010601 xref: BTO:0001979 xref: FMA:62888 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c0/Gray1021.png/200px-Gray1021.png is_a: UBERON:0002365 ! exocrine gland [Term] id: UBERON:0000415 name: artery wall alt_id: UBERON:BTO_0002009-FMA_14155 def: "An anatomical wall that is part of an artery [Obol]." [OBOL:automatic] synonym: "Arterial wall" EXACT [FMA:14155] synonym: "wall of artery" EXACT [FMA:14155] xref: BTO:0002009 xref: FMA:14155 xref: galen:ArterialWall is_a: UBERON:0000060 ! implied link automatically realized ! anatomical wall is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001637 intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0001637 ! artery [Term] id: UBERON:0000416 name: subdural space alt_id: UBERON:BTO_0002082-FMA_83803 synonym: "cavum subdurale" RELATED [BTO:0002082] synonym: "spatium subdurale" RELATED [BTO:0002082] synonym: "subdural cavity" RELATED [BTO:0002082] synonym: "subdural cleavage" RELATED [BTO:0002082] synonym: "subdural cleft" RELATED [BTO:0002082] xref: BTO:0002082 xref: FMA:83803 xref: GAID:692 xref: MESH:A.08.186.566.395.687 xref: SCTID:362308002 is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0000417 name: primitive endoderm alt_id: UBERON:0003226 alt_id: UBERON:BTO_0002123-FMA_85520 subset: early_development xref: BTO:0002123 xref: EHDAA:44 xref: EHDAA:79 xref: EMAPA:16051 xref: EMAPA:16063 xref: FMA:85520 is_a: UBERON:0000925 ! endoderm [Term] id: UBERON:0000418 name: tubercle alt_id: UBERON:BTO_0002173-FMA_75429 is_obsolete: true [Term] id: UBERON:0000420 name: myoepithelium alt_id: UBERON:BTO_0002308-FMA_67805 def: "An epithelium consisting of myopethelial cells, which are contractile cells resembling smooth muscle cells that are present in glands, notably the mammary gland, and aid in secretion. This cell has long weaving dendritic processes containing myofilament[CL]." [CL:0000185, Wikipedia:Myoepithelial_cell] synonym: "myo-epithelium" EXACT [FMA:67805] xref: BTO:0002308 xref: FMA:67805 is_a: UBERON:0000488 ! implied link automatically realized ! atypical epithelium [Term] id: UBERON:0000423 name: eccrine sweat gland alt_id: UBERON:BTO_0002323-FMA_59154 subset: organ_slim synonym: "eccrine gland" EXACT [FMA:59154] xref: BTO:0002323 xref: FMA:59154 xref: GAID:945 xref: MESH:A.10.336.899.480 xref: ncithesaurus:Eccrine_Sweat_Gland xref: SCTID:361699008 is_a: UBERON:0001820 ! sweat gland [Term] id: UBERON:0000424 name: gastric pit alt_id: UBERON:0000425 alt_id: UBERON:BTO_0002364-FMA_62947 synonym: "foveola gastrica" RELATED [BTO:0002364] synonym: "foveolae gastricae" EXACT PLURAL [FMA:76583, FMA:TA] synonym: "gastric foveola" EXACT [FMA:62947] xref: BTO:0002364 xref: FMA:62947 xref: ncithesaurus:Gastric_Pit xref: SCTID:268426007 is_a: UBERON:0002553 ! anatomical cavity [Term] id: UBERON:0000426 name: extravillous trophoblast alt_id: UBERON:BTO_0002366-FMA_86561 synonym: "intermediate trophoblast" EXACT [FMA:86561] synonym: "interstitial trophoblast" RELATED [BTO:0002366] xref: BTO:0002366 xref: FMA:86561 is_a: UBERON:0002050 ! embryonic structure [Term] id: UBERON:0000427 name: cytotrophoblastic cell xref: ncithesaurus:Cytotrophoblastic_Cell is_obsolete: true [Term] id: UBERON:0000428 name: prostate epithelium alt_id: UBERON:0002452 alt_id: UBERON:BTO_0002397-FMA_66812 def: "the prostate epithelium." [MP:0001168] comment: TODO - check 2 FMA IDs synonym: "epithelial tissue of prostate" EXACT [OBOL:automatic] synonym: "epithelial tissue of prostate gland" EXACT [OBOL:automatic] synonym: "epithelium of prostate" EXACT [OBOL:automatic] synonym: "epithelium of prostate gland" EXACT [OBOL:automatic] synonym: "epithelium of prostatic gland" EXACT [FMA:79643] synonym: "prostate epithelial tissue" EXACT [OBOL:automatic] synonym: "prostate gland epithelial tissue" EXACT [OBOL:automatic] synonym: "prostate gland epithelium" EXACT [] synonym: "prostatic epithelium" EXACT [FMA:66812] synonym: "prostatic gland epithelium" EXACT [] xref: BTO:0002397 xref: FMA:66812 xref: FMA:79643 xref: MA:0001737 xref: ncithesaurus:Prostatic_Epithelium is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000485 ! simple columnar epithelium is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure is_a: UBERON:0005911 ! endo-epithelium relationship: part_of UBERON:0002367 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002367 ! prostate gland [Term] id: UBERON:0000429 name: enteric plexus alt_id: UBERON:BTO_0002437-FMA_77597 def: "A plexus of autonomic nerve fibers within the wall of the digestive tube, and made up of the submucosal, myenteric, and subserosal plexuses; it contains visceral afferent fibers, sympathetic postganglionic fibers, parasympathetic preganglionic and postganglionic fibers, and parasympathetic postganglionic cell bodies." [BTO:0002437] comment: TODO - add subserosal plexus? synonym: "enteric nerve plexus" EXACT [FMA:77597] synonym: "plexus entericus" EXACT [BTO:0002437] synonym: "plexus nervosus entericus" EXACT [FMA:77597, FMA:TA] synonym: "sympathetic enteric nerve plexus" EXACT [FMA:77597] xref: BTO:0002437 xref: FMA:77597 is_a: UBERON:0001816 ! autonomic nerve plexus relationship: part_of UBERON:0002005 ! enteric nervous system [Term] id: UBERON:0000430 name: ventral intermediate nucleus of thalamus alt_id: UBERON:BTO_0002469-FMA_84347 def: "A nucleus medially located within the ventral nuclei of the thalamus." [BTO:0002469] subset: vertebrate_core synonym: "nucleus ventralis intermedius thalami" RELATED [BTO:0002469] xref: BTO:0002469 xref: EV:0100208 xref: FMA:84347 xref: ZFA:0000370 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter is_a: UBERON:0007692 ! implied link automatically realized ! nucleus of thalamus relationship: part_of UBERON:0001900 {source="BTO-definition", source="ZFA"} ! subthalamus [Term] id: UBERON:0000431 name: ventral medial complex of thalamus alt_id: UBERON:BTO_0002470-FMA_77795 synonym: "nuclei ventrales mediales thalami" RELATED [BTO:0002470] synonym: "ventral medial complex of thalamus" EXACT [FMA:77795] synonym: "ventral medial nuclei of thalamus" EXACT [FMA:77795] xref: BTO:0002470 xref: FMA:77795 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001897 ! thalamus [Term] id: UBERON:0000432 name: endopeduncular nucleus alt_id: UBERON:BTO_0002475-FMA_77691 synonym: "nucleus endopeduncularis" RELATED [BTO:0002475] xref: BTO:0002475 xref: FMA:77691 xref: MESH:A.08.186.211.730.385.800.240 xref: SCTID:82705008 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0000433 name: posterior paraventricular nucleus of thalamus alt_id: UBERON:BTO_0002477-FMA_76961 synonym: "dorsal paraventricular nucleus of thalamus" EXACT [FMA:76961] synonym: "nucleus paraventricularis posterior thalami" RELATED [BTO:0002477] xref: BTO:0002477 xref: FMA:76961 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter [Term] id: UBERON:0000434 name: anterior paraventricular nucleus of thalamus alt_id: UBERON:BTO_0002478-FMA_76962 synonym: "nucleus paraventricularis anterior thalami" RELATED [BTO:0002478] synonym: "ventral paraventricular nucleus of thalamus" EXACT [FMA:76962] xref: BTO:0002478 xref: FMA:76962 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter [Term] id: UBERON:0000435 name: lateral tuberal nucleus alt_id: UBERON:BTO_0002481-FMA_62336 synonym: "Lateral tuberal hypothalamic nuclei" EXACT [FMA:62336] synonym: "lateral tuberal nuclear complex" EXACT [NIF_GrossAnatomy:birnlex_1206] synonym: "Lateral tuberal nuclei" EXACT [FMA:62336] synonym: "nuclei tuberales laterales" RELATED [BTO:0002481] xref: BM:TU xref: BTO:0002481 xref: EV:0100240 xref: FMA:62336 xref: NIF_GrossAnatomy:birnlex_1206 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter is_a: UBERON:0006568 ! implied link automatically realized ! hypothalamic nucleus relationship: part_of UBERON:0002430 ! lateral hypothalamic area [Term] id: UBERON:0000437 name: arachnoid barrier layer alt_id: UBERON:BTO_0002498-FMA_231559 xref: BTO:0002498 xref: FMA:231559 is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0004923 ! organ component layer relationship: part_of UBERON:0002362 ! arachnoid mater [Term] id: UBERON:0000438 name: set of arachnoid trabecula alt_id: UBERON:BTO_0002500-FMA_77761 synonym: "Arachnoid trabeculae set" EXACT [FMA:77761] synonym: "trabeculae arachnoideae" EXACT [FMA:77761, FMA:TA] xref: BTO:0002500 xref: FMA:77761 is_obsolete: true [Term] id: UBERON:0000439 name: arachnoid trabecula alt_id: UBERON:BTO_0002500-FMA_83979 def: "a small, often microscopic, tissue element in the form of a small beam, strut or rod, generally having a mechanical function, and usually but not necessarily composed of dense collagenous tissue." [GO:0060343] synonym: "trabecula arachnoideum" RELATED [] xref: BTO:0002500 xref: FMA:83979 is_a: UBERON:0000440 ! trabecula is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0002362 ! arachnoid mater [Term] id: UBERON:0000440 name: trabecula alt_id: UBERON:BTO_0002501-FMA_85273 def: "A small, often microscopic, tissue element in the form of a small beam, strut or rod, generally having a mechanical function, and usually but not necessarily composed of dense collagenous tissue. On histological section, a trabecula can look like a septum, but in three dimensions they are topologically distinct, with trabeculae being roughly rod or pillar-shaped and septa being sheet-like.. Trabeculae are usually composed of dense fibrous tissue, i.e. mainly of collagen, and in most cases provide mechanical strengthening or stiffening to a soft solid organ, such as the spleen. They can be composed of other materials, such as bone or muscle[WP]." [Wikipedia:Trabecula] xref: BTO:0002501 xref: FMA:85273 is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0000442 name: right testicular vein alt_id: UBERON:BTO_0002679-FMA_14341 def: "A vein that drains the left pampiniform plexus and empties into the left renal vein." [Dorlands_Medical_Dictionary:MerckSource] synonym: "vena testicularis (adrenalis) dextra" EXACT [FMA:14341] synonym: "vena testicularis dextra" RELATED [BTO:0002679] synonym: "vena testicularis sinistra" RELATED [BTO:0002680] xref: BTO:0002679 xref: FMA:14341 xref: MA:0002220 xref: SCTID:53500001 is_a: UBERON:0001144 ! testicular vein [Term] id: UBERON:0000443 name: left testicular vein alt_id: UBERON:BTO_0002680-FMA_14345 def: "A vein that drains the right pampiniform plexus and empties into the inferior vena cava." [Dorlands_Medical_Dictionary:MerckSource] synonym: "vena testicularis dextra" RELATED [BTO:0002679] synonym: "vena testicularis sinistra" RELATED [BTO:0002680] xref: BTO:0002680 xref: FMA:14345 xref: MA:0002219 xref: SCTID:90988008 is_a: UBERON:0001144 ! implied link automatically realized ! testicular vein relationship: part_of UBERON:0004531 intersection_of: UBERON:0001144 ! testicular vein intersection_of: part_of UBERON:0004531 ! left side of organism [Term] id: UBERON:0000444 name: lymphoid follicle alt_id: UBERON:BTO_0002684-FMA_55222 synonym: "folliculus lymphaticus" RELATED [BTO:0002684] synonym: "lymph node follicle" EXACT [MA:0000742] synonym: "lymphatic follicle" RELATED [BTO:0002684] synonym: "lymphatic nodule" RELATED [BTO:0002684] synonym: "lymphoid nodule" EXACT [FMA:55222] synonym: "nodular lymphoid tissue" EXACT [FMA:55222] synonym: "nodulus lymphaticus" RELATED [BTO:0002684] synonym: "nodulus lymphoideus" RELATED [BTO:0002684] xref: BTO:0002684 xref: FMA:55222 xref: MA:0000742 xref: ncithesaurus:Lymphoid_Follicle xref: SCTID:64626006 is_a: UBERON:0001744 ! lymphoid tissue relationship: part_of UBERON:0000029 ! lymph node [Term] id: UBERON:0000445 name: habenular trigone alt_id: UBERON:BTO_0002700-FMA_74868 def: "The habenular trigone is a small depressed triangular area situated in front of the superior colliculus and on the lateral aspect of the posterior part of the taenia thalami. It contains a group of nerve cells termed the ganglion habenulC&. Fibers enter it from the stalk of the pineal body, and others, forming what is termed the habenular commissure, pass across the middle line to the corresponding ganglion of the opposite side. Most of its fibers are, however, directed downward and form a bundle, the fasciculus retroflexus of Meynert, which passes medial to the red nucleus, and, after decussating with the corresponding fasciculus of the opposite side, ends in the interpeduncular ganglion." [Wikipedia:Habenular_trigone] comment: superclass in BTO is thalamic nucleus, not present in most ontologies synonym: "trigone of habenulae" RELATED [BTO:0002700] synonym: "trigonum habenulae" RELATED [BTO:0002700] xref: BTO:0002700 xref: FMA:74868 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001894 ! diencephalon relationship: part_of UBERON:0001904 ! habenula [Term] id: UBERON:0000446 name: septum of telencephalon alt_id: UBERON:BTO_0002705-FMA_61842 def: "Subdivision of the telencephalon on the midline between the lateral ventricles which contains the septum pellucidum and the septal nuclei[FMA]." [FMA:61842] synonym: "area septalis" EXACT [FMA:61842, FMA:TA] synonym: "septal area" EXACT [FMA:61842] synonym: "septum" BROAD [NIF_GrossAnatomy:birnlex_963] synonym: "septum (NN)" EXACT [FMA:61842] synonym: "telencephalon septum" EXACT [FMA:61842] xref: BTO:0002705 xref: FMA:61842 xref: MA:0000924 xref: MESH:A.08.186.211.577.750 xref: NIF_GrossAnatomy:birnlex_963 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001869 ! cerebral hemisphere relationship: part_of UBERON:0001893 ! telencephalon [Term] id: UBERON:0000449 name: decidual cell alt_id: UBERON:BTO_0002770-FMA_86480 def: "Before the fertilized ovum reaches the uterus, the mucous membrane of the body of the uterus undergoes important changes and is then known as the decidua. The thickness and vascularity of the mucous membrane are greatly increased; its glands are elongated and open on its free surface by funnel-shaped orifices, while their deeper portions are tortuous and dilated into irregular spaces. The interglandular tissue is also increased in quantity, and is crowded with large round, oval, or polygonal cells, termed decidual cells. Their enlargement is due to glycogen and lipid accumulation in the cytoplasm allowing these cells to provide a rich source of nutrition for the developing embryo. [WP,unvetted]." [Wikipedia:Decidual_cells] comment: request from CL xref: BTO:0002770 xref: FMA:86480 xref: ncithesaurus:Decidual_Cell is_a: UBERON:0000478 ! extraembryonic structure [Term] id: UBERON:0000450 name: corpus albicans alt_id: UBERON:BTO_0002784-FMA_18620 synonym: "Corpus albicans of ovary" EXACT [FMA:18620] synonym: "corpus fibrosum" RELATED [BTO:0002784] xref: BTO:0002784 xref: EMAPA:29888 xref: FMA:18620 is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0000451 name: prefrontal cortex alt_id: UBERON:BTO_0002807-FMA_224850 def: "The prefrontal cortex (PFC) is the anterior part of the frontal lobes of the brain, lying in front of the motor and premotor areas. This brain region has been implicated in planning complex cognitive behaviors, personality expression, decision making and moderating correct social behavior. The basic activity of this brain region is considered to be orchestration of thoughts and actions in accordance with internal goals. The most typical psychological term for functions carried out by the pre-frontal cortex area is executive function. Executive function relates to abilities to differentiate among conflicting thoughts, determine good and bad, better and best, same and different, future consequences of current activities, working toward a defined goal, prediction of outcomes, expectation based on actions, and social 'control' (the ability to suppress urges that, if not suppressed, could lead to socially-unacceptable outcomes). Many authors have indicated an integral link between a person's personality and the functions of the prefrontal cortex. [WP,unvetted]." [Wikipedia:Prefrontal_cortex] comment: TODO - check MA synonym: "frontal association cortex" RELATED ATTRIBUTION_REQUIRED [MA:0000906] synonym: "prefrontal association complex" RELATED [BTO:0002807] synonym: "prefrontal association cortex" EXACT [FMA:224850] xref: BTO:0002807 xref: EFO:0001384 xref: FMA:224850 xref: GAID:676 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/59/Gray726-Brodman-prefrontal.svg/200px-Gray726-Brodman-prefrontal.svg.png xref: MA:0000906 xref: MESH:A.08.186.211.730.885.213.270.700 xref: NIF_GrossAnatomy:nlx_anat_090801 is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0001870 ! frontal cortex [Term] id: UBERON:0000453 name: decidua basalis alt_id: UBERON:BTO_0002819-FMA_86477 synonym: "decidua serotina" RELATED [BTO:0002819] xref: BTO:0002819 xref: EFO:0001918 xref: FMA:86477 xref: MA:0002905 xref: ncithesaurus:Decidua_Basalis xref: SCTID:362841006 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000478 ! extraembryonic structure is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0002450 ! decidua [Term] id: UBERON:0000454 name: cerebral subcortex alt_id: UBERON:BTO_0002858-FMA_242188 synonym: "Cerebral medulla" EXACT [FMA:242188] synonym: "subcortex" RELATED [BTO:0002858] xref: BTO:0002858 xref: FMA:242188 is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0000456 name: secretion alt_id: UBERON:BTO_0002979-FMA_9675 xref: BTO:0002979 xref: FMA:9675 xref: galen:Secretion xref: MESH:A.12.200 is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0000457 name: cavernous artery alt_id: UBERON:BTO_0002996-FMA_70527 synonym: "Cavernous branch of cavernous part of internal carotid artery" EXACT [FMA:70527] synonym: "ramus sinus cavernosi (pars cavernosa) (arteria carotis interna)" EXACT [FMA:70527, FMA:TA] xref: BTO:0002996 xref: FMA:70527 is_a: UBERON:0000063 ! organ segment is_a: UBERON:0001637 ! artery [Term] id: UBERON:0000458 name: endocervix alt_id: UBERON:BTO_0003002-FMA_86485 xref: BTO:0003002 xref: FMA:86485 xref: ncithesaurus:Endocervix xref: SCTID:264460007 is_a: UBERON:0000063 ! organ segment [Term] id: UBERON:0000459 name: uterine wall alt_id: UBERON:BTO_0003083-FMA_17560 def: "An anatomical wall that is part of a uterus [Obol]." [OBOL:automatic] synonym: "anatomical wall of uterus" EXACT [OBOL:automatic] synonym: "uterus anatomical wall" EXACT [OBOL:automatic] synonym: "uterus wall" EXACT [OBOL:automatic] synonym: "wall of uterus" EXACT [OBOL:automatic] xref: BTO:0003083 xref: FMA:17560 xref: SCTID:245485002 is_a: UBERON:0000060 ! implied link automatically realized ! anatomical wall is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0000995 intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0000995 ! uterus relationship: part_of UBERON:0000995 ! uterus [Term] id: UBERON:0000460 name: major vestibular gland alt_id: UBERON:BTO_0003115-FMA_9598 def: "Gland found in pairs located slightly below and to the left and right of the opening of the vagina in women. Bartholin's glands are homologous to bulbourethral glands in males. However, while Bartholin's glands are located in the superficial perineal pouch, bulbourethral glands are located in the deep perineal pouch. They secrete mucus to provide vaginal lubrication." [Wikipedia:Bartholin's_glands] subset: organ_slim synonym: "Bartholin's gland" EXACT [FMA:9598] synonym: "Duverney's gland" EXACT [FMA:9598] synonym: "glandula vestibularis major" RELATED [BTO:0003115] synonym: "greater vestibular gland" RELATED [MA:0002936] synonym: "Tiedemann's gland" EXACT [FMA:9598] synonym: "Vulvovaginal gland" EXACT [FMA:9598] xref: BTO:0003115 xref: FMA:9598 xref: GAID:384 xref: MA:0002936 xref: MESH:A.05.360.319.887.220 xref: SCTID:362244005 is_a: UBERON:0002530 ! gland is_a: UBERON:0003297 ! implied link automatically realized ! gland of integumental system relationship: part_of UBERON:0002416 ! integumental system [Term] id: UBERON:0000461 name: minor vestibular gland alt_id: UBERON:BTO_0003116-FMA_20019 subset: organ_slim synonym: "Glandula vestibular minor" EXACT [FMA:20019] synonym: "glandula vestibulares minor" RELATED [BTO:0003116] synonym: "Guerin's gland" RELATED [BTO:0003116] synonym: "lesser vestibular gland" EXACT [FMA:20019] synonym: "paraurethral gland" RELATED [BTO:0003116] synonym: "periurethral gland" RELATED [BTO:0003116] synonym: "Schueller's gland" RELATED [BTO:0003116] synonym: "skene's gland" RELATED [BTO:0003116] synonym: "urethral gland of female urethra" RELATED [BTO:0003116] xref: BTO:0003116 xref: EMAPA:29653 xref: FMA:20019 xref: ncithesaurus:Paraurethral_Gland xref: SCTID:279869001 is_a: UBERON:0002530 ! gland [Term] id: UBERON:0000462 name: villus is_obsolete: true [Term] id: UBERON:0000463 name: portion of organism substance alt_id: UBERON:CARO_0000004-FBbt_00007019 def: "Material anatomical entity in a gaseous, liquid, semisolid or solid state; produced by anatomical structures or derived from inhaled and ingested substances that have been modified by anatomical structures as they pass through the body." [CARO:MAH] subset: upper_level synonym: "body fluid or substance" EXACT [MA:0002450] synonym: "body substance" EXACT [FMA:9669] synonym: "organism substance" EXACT [] synonym: "portion of body substance" EXACT [FMA:9669] xref: AAO:0010839 xref: AEO:0000004 xref: BILA:0000004 xref: CARO:0000004 xref: EHDAA2:0003004 xref: FBbt:00007019 xref: FMA:9669 xref: galen:BodySubstance xref: HAO:0000004 xref: MA:0002450 xref: ncithesaurus:Body_Fluid_or_Substance xref: TGMA:0001824 xref: XAO:0004001 xref: ZFA:0001487 is_a: UBERON:0000465 ! material anatomical entity relationship: part_of UBERON:0000468 ! multi-cellular organism [Term] id: UBERON:0000464 name: anatomical space alt_id: UBERON:CARO_0000005-FBbt_00007017-FMA_5897-ZFA_0001643 def: "Non-material anatomical entity of three dimensions, that is generated by morphogenetic or other physiologic processes; is surrounded by one or more anatomical structures; contains one or more organism substances or anatomical structures." [CARO:MAH] subset: upper_level xref: AAO:0010110 xref: AEO:0000005 xref: BILA:0000005 xref: CARO:0000005 xref: EHDAA2:0003005 xref: FBbt:00007017 xref: FMA:5897 xref: HAO:0000005 xref: TAO:0001668 xref: TGMA:0001825 xref: XAO:0003190 xref: ZFA:0001643 is_a: UBERON:0000466 ! immaterial anatomical entity relationship: surrounded_by UBERON:0000061 ! anatomical structure [Term] id: UBERON:0000465 name: material anatomical entity alt_id: UBERON:CARO_0000006-FBbt_00007016-FMA_67165-ZFA_0001487 def: "Anatomical entity that has mass." [CARO:MAH] subset: upper_level xref: AAO:0010264 xref: AEO:0000006 xref: BILA:0000006 xref: CARO:0000006 xref: EHDAA2:0003006 xref: FBbt:00007016 xref: FMA:67165 xref: HAO:0000006 xref: TAO:0001836 xref: TGMA:0001826 is_a: UBERON:0001062 ! anatomical entity [Term] id: UBERON:0000466 name: immaterial anatomical entity alt_id: UBERON:CARO_0000007-FBbt_00007015 def: "Anatomical entity that has no mass." [CARO:MAH] subset: disjointness_axiom_removed subset: upper_level synonym: "immaterial physical anatomical entity" EXACT [FMA:67112] xref: AAO:0010265 xref: AEO:0000007 xref: BILA:0000007 xref: CARO:0000007 xref: EHDAA2:0003007 xref: FBbt:00007015 xref: FMA:67112 xref: HAO:0000007 xref: TGMA:0001827 is_a: UBERON:0001062 ! anatomical entity [Term] id: UBERON:0000467 name: anatomical system alt_id: UBERON:CARO_0000011-XAO_0003002-ZFA_0001439 alt_id: UBERON:FBbt_00004856-FBbt_00004969-FMA_7149-FMA_72979-MA_0000003-MA_0000014-MIAA_0000033-WBbt_0005730-XAO_0000176 def: "Anatomical group that is has as its parts distinct anatomical structures interconnected by anatomical structures at a lower level of granularity[CARO]. A group of organs that work together to perform a certain task [Wikipedia]." [CARO:0000011, CARO:MAH, Wikipedia:Organ_system] subset: uberon_slim subset: upper_level synonym: "body system" EXACT [NIF_GrossAnatomy:birnlex_14] synonym: "organ system" EXACT [] synonym: "system" BROAD [GO:0048731] xref: AAO:0000007 xref: AEO:0000011 xref: BILA:0000011 xref: CARO:0000011 xref: EHDAA:392 xref: EHDAA2:0001330 xref: EHDAA2:0003011 xref: EMAPA:16103 xref: EV:0100000 xref: FBbt:00004856 xref: FMA:7149 xref: galen:AnatomicalSystem xref: HAO:0000011 xref: MA:0000003 xref: ncithesaurus:Organ_System xref: NIF_GrossAnatomy:birnlex_14 xref: OpenCyc:Mx4rCWM0QCtDEdyAAADggVbxzQ xref: SCTID:278195005 xref: TAO:0001439 xref: TGMA:0001831 xref: WBbt:0005746 xref: XAO:0003002 xref: ZFA:0001439 is_a: UBERON:0000480 ! anatomical group relationship: part_of UBERON:0000468 ! multi-cellular organism [Term] id: UBERON:0000468 name: multi-cellular organism alt_id: UBERON:CARO_0000012-XAO_0003004 def: "Anatomical structure that is an individual member of a species and consists of more than one cell." [CARO:0000012, CARO:MAH, Wikipedia:Multi-cellular_organism] comment: TODO - split body and mc organism? body continues after death stage subset: uberon_slim subset: upper_level synonym: "adult mouse" EXACT [MA:0002405] synonym: "body" EXACT [] synonym: "Koerper" RELATED [BTO:0001489] synonym: "organism" EXACT [] synonym: "TS28" RELATED [MA:0002405] synonym: "whole body" EXACT [BTO:0001489] synonym: "whole organism" EXACT [] xref: AAO:0010026 xref: AEO:0000103 xref: AEO:0000191 xref: BILA:0000012 xref: BTO:0001489 xref: CARO:0000012 xref: EFO:0002906 xref: EHDAA:1 xref: EHDAA:9178 xref: EHDAA2:0003103 xref: EHDAA2:0003191 xref: EMAPA:25765 xref: EV:0100016 xref: FBbt:00000001 xref: FMA:256135 xref: galen:Organism xref: HAO:0000012 xref: MA:0002405 xref: ncithesaurus:Whole_Organism xref: NIF_GrossAnatomy:birnlex_18 xref: OG:0000671 xref: TADS:0000001 xref: TAO:0001094 xref: TGMA:0001832 xref: WBbt:0007833 xref: XAO:0003004 xref: ZFA:0001094 is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0000470 name: cell part alt_id: UBERON:CARO_0000014-FBbt_00007012-FMA_86454 def: "Anatomical structure that is a direct part of the cell." [CARO:MAH] comment: todo - move metadata to GO and obsolete this class. Note the inconsistency between the usage of the label 'cell component' in GO and CARO subset: upper_level synonym: "cell component" RELATED [CARO:0000014] xref: AAO:0010271 xref: BILA:0000014 xref: CARO:0000014 xref: FBbt:00007012 xref: FMA:86454 xref: GO:0044464 xref: HAO:0000014 xref: ncithesaurus:Cell_Part xref: NIF_Subcellular:sao-1337158144 xref: OpenCyc:Mx4rwQwkcZwpEbGdrcN5Y29ycA xref: TGMA:0001834 is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0000471 name: compound organ component alt_id: UBERON:CARO_0000019-XAO_0003039-ZFA_0001489 def: "Multi-tissue structure that is part of a compound organ." [CARO:0000019, CARO:MAH] subset: upper_level xref: AAO:0010017 xref: AEO:0000019 xref: BILA:0000019 xref: CARO:0000019 xref: EHDAA2:0003019 xref: HAO:0000019 xref: TAO:0001489 xref: TGMA:0001835 xref: XAO:0003039 xref: ZFA:0001489 is_a: UBERON:0000481 ! multi-tissue structure [Term] id: UBERON:0000472 name: simple organ alt_id: UBERON:CARO_0000021-XAO_0003038-ZFA_0001492 def: "Multi-tissue structure that is not part of a compound organ." [CARO:0000021, CARO:MAH] subset: upper_level xref: AAO:0010051 xref: AEO:0000190 xref: BILA:0000021 xref: CARO:0000021 xref: EHDAA2:0003190 xref: HAO:0000021 xref: TAO:0001492 xref: TGMA:0001836 xref: XAO:0003038 xref: ZFA:0001492 is_a: UBERON:0000481 ! multi-tissue structure [Term] id: UBERON:0000473 name: testis alt_id: UBERON:0002117 alt_id: UBERON:CARO_0000027-FBbt_00004927-FBbt_00004928-FBbt_00007004-FMA_45664-FMA_7210-MA_0000396-MA_0000411-MIAA_0000029-MIAA_0000132-WBbt_0006794-XAO_0000155-XAO_0000157-XAO_0003006-ZFA_0000242-ZFA_0000598 def: "gonad of a male animal, produces and releases sperm." [Wikipedia:Testis] subset: organ_slim subset: uberon_slim subset: vertebrate_core synonym: "genitalia of male organism gonad" EXACT [OBOL:automatic] synonym: "genitalia of male organism gonada" EXACT [OBOL:automatic] synonym: "gonad of genitalia of male organism" EXACT [OBOL:automatic] synonym: "gonad of male genitalia" EXACT [OBOL:automatic] synonym: "gonad of male genitals" EXACT [OBOL:automatic] synonym: "gonad of male organism genitalia" EXACT [OBOL:automatic] synonym: "gonad of male organism reproductive system" EXACT [OBOL:automatic] synonym: "gonad of male reproductive system" EXACT [OBOL:automatic] synonym: "gonad of reproductive system of male organism" EXACT [OBOL:automatic] synonym: "gonada of genitalia of male organism" EXACT [OBOL:automatic] synonym: "gonada of male genitalia" EXACT [OBOL:automatic] synonym: "gonada of male genitals" EXACT [OBOL:automatic] synonym: "gonada of male organism genitalia" EXACT [OBOL:automatic] synonym: "gonada of male organism reproductive system" EXACT [OBOL:automatic] synonym: "gonada of male reproductive system" EXACT [OBOL:automatic] synonym: "gonada of reproductive system of male organism" EXACT [OBOL:automatic] synonym: "male genitalia gonad" EXACT [OBOL:automatic] synonym: "male genitalia gonada" EXACT [OBOL:automatic] synonym: "male genitals gonad" EXACT [OBOL:automatic] synonym: "male gonad" EXACT [OBOL:automatic] synonym: "male organism genitalia gonad" EXACT [OBOL:automatic] synonym: "male organism genitalia gonada" EXACT [OBOL:automatic] synonym: "male organism reproductive system gonad" EXACT [OBOL:automatic] synonym: "male organism reproductive system gonada" EXACT [OBOL:automatic] synonym: "male reproductive system gonad" EXACT [OBOL:automatic] synonym: "male reproductive system gonada" EXACT [OBOL:automatic] synonym: "orchis" RELATED [BTO:0001363] synonym: "reproductive system of male organism gonad" EXACT [OBOL:automatic] synonym: "reproductive system of male organism gonada" EXACT [OBOL:automatic] synonym: "testes" RELATED PLURAL [] synonym: "testicle" EXACT [FMA:7210] synonym: "testiculus" RELATED [BTO:0001363] xref: AAO:0000606 xref: BILA:0000124 xref: BTO:0001363 xref: EFO:0000984 xref: EHDAA:8146 xref: EHDAA2:0002007 xref: EMAPA:17972 xref: EV:0100102 xref: FBbt:00004928 xref: FMA:7210 xref: GAID:396 xref: galen:Testis xref: HAO:0001007 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Gray1144.png/200px-Gray1144.png xref: MA:0000411 xref: MAT:0000132 xref: MESH:A.05.360.444.849 xref: MIAA:0000132 xref: ncithesaurus:Testis xref: OG:0000252 xref: OpenCyc:Mx4rvVjM25wpEbGdrcN5Y29ycA xref: SCTID:181431007 xref: TAO:0000598 xref: WBbt:0006794 xref: XAO:0000157 xref: ZFA:0000598 is_a: UBERON:0000991 ! gonad is_a: UBERON:0003135 ! implied link automatically realized ! male reproductive organ relationship: part_of UBERON:0000079 intersection_of: UBERON:0000991 ! gonad intersection_of: part_of UBERON:0000079 ! male reproductive system disjoint_from: UBERON:0000992 ! female gonad relationship: develops_from UBERON:0009117 ! indifferent gonad relationship: part_of UBERON:0000079 ! male reproductive system [Term] id: UBERON:0000474 name: female reproductive system alt_id: UBERON:CARO_0000028-FBbt_00004864-FBbt_00007011-FMA_45663-MA_0000381-MIAA_0000028-XAO_0000156-XAO_0003005-ZFA_0000303 def: "The organs of the female reproductive system." [Wikipedia:Female_genitalia] subset: uberon_slim synonym: "female genital system" RELATED [] synonym: "female genitalia" RELATED [] synonym: "female organism genitalia" EXACT [OBOL:automatic] synonym: "female organism reproductive system" EXACT [OBOL:automatic] synonym: "female reproductive tract" RELATED [MA:0000381] synonym: "genitalia of female organism" EXACT [OBOL:automatic] synonym: "gynaecological tissue" RELATED [BTO:0000083] synonym: "reproductive system of female organism" EXACT [OBOL:automatic] synonym: "systema genitale femininum" RELATED [BTO:0000083] xref: BTO:0000083 xref: EFO:0000969 xref: EHDAA:8116 xref: EHDAA2:0000506 xref: EMAPA:17959 xref: EV:0100110 xref: FBbt:00004864 xref: FMA:45663 xref: GAID:364 xref: HAO:0000324 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/68/Scheme_female_reproductive_system-en.svg/200px-Scheme_female_reproductive_system-en.svg.png xref: MA:0000381 xref: MESH:A.05.360.319 xref: MIAA:0000028 xref: ncithesaurus:Female_Reproductive_System xref: OG:0000726 xref: OpenCyc:Mx4rvVipTZwpEbGdrcN5Y29ycA xref: TGMA:0000635 xref: WBbt:0006748 xref: XAO:0000156 is_a: UBERON:0000990 ! reproductive system relationship: part_of UBERON:0003100 intersection_of: UBERON:0000990 ! reproductive system intersection_of: part_of UBERON:0003100 ! female organism relationship: part_of UBERON:0003100 ! female organism [Term] id: UBERON:0000475 name: organism subdivision alt_id: UBERON:CARO_0000032-FBbt_00007009-FMA_67504-MIAA_0000293-XAO_0003013-ZFA_0001308 def: "Anatomical structure which is a primary subdivision of whole organism. The mereological sum of these is the whole organism." [CARO:0000032, CARO:MAH, Wikipedia:Body_part] comment: todo - check the inclusion of FMA 'cardinal body part here', and check child terms for consistency subset: uberon_slim subset: upper_level synonym: "body part" RELATED [] synonym: "body region" RELATED [FMA:7153] synonym: "cardinal body part" RELATED [FMA:7153] xref: AAO:0010053 xref: AEO:0000032 xref: BILA:0000032 xref: CARO:0000032 xref: EFO:0000808 xref: EHDAA2:0003032 xref: FBbt:00007009 xref: FMA:7153 xref: galen:BodyPart xref: HAO:0000032 xref: MA:0002433 xref: MAT:0000293 xref: MESH:A.01 xref: MIAA:0000293 xref: ncithesaurus:Body_Part xref: OpenCyc:Mx4rvViAHJwpEbGdrcN5Y29ycA xref: TAO:0001308 xref: TGMA:0001840 xref: XAO:0003013 xref: ZFA:0001308 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0000468 ! multi-cellular organism [Term] id: UBERON:0000476 name: acellular anatomical structure alt_id: UBERON:CARO_0000040-FBbt_00007013-FMA_63863-ZFA_0000382 def: "Anatomical structure that consists of cell parts and cell substances and together does not constitute a cell or a tissue." [CARO:MAH] subset: vertebrate_core xref: AAO:0010268 xref: AEO:0000040 xref: BILA:0000040 xref: CARO:0000040 xref: EHDAA2:0003040 xref: FBbt:00007013 xref: FMA:63863 xref: HAO:0000040 xref: TAO:0000382 xref: TGMA:0001841 xref: XAO:0003162 xref: ZFA:0000382 is_a: UBERON:0000061 ! anatomical structure disjoint_from: UBERON:0000480 ! anatomical group [Term] id: UBERON:0000477 name: anatomical cluster alt_id: UBERON:CARO_0000041-FMA_49443-ZFA_0001478 def: "Anatomical group that has its parts adjacent to one another." [CARO:MAH] subset: disjointness_axiom_removed subset: upper_level xref: AAO:0010009 xref: AEO:0000041 xref: BILA:0000041 xref: CARO:0000041 xref: EHDAA2:0003041 xref: FBbt:00007277 xref: FMA:49443 xref: HAO:0000041 xref: TADS:0000605 xref: TAO:0001478 xref: TGMA:0001842 xref: XAO:0003160 xref: ZFA:0001478 is_a: UBERON:0000480 ! anatomical group [Term] id: UBERON:0000478 name: extraembryonic structure alt_id: UBERON:CARO_0000042-FBbt_00005835-FMA_85537-MIAA_0000061-ZFA_0000020 def: "Anatomical structure that is contiguous with the embryo and is comprised of portions of tissue or cells that will not contribute to the embryo." [CARO:MAH] comment: see also conceptus extraembryonic component in EHDAA2 subset: uberon_slim subset: vertebrate_core synonym: "extra-embryonic structure" EXACT [] synonym: "extraembryonic component" RELATED [] synonym: "extraembryonic tissue" RELATED [] xref: AAO:0010020 xref: AEO:0000042 xref: BILA:0000042 xref: CARO:0000042 xref: EHDAA:46 xref: EHDAA2:0003042 xref: EMAPA:16042 xref: FBbt:00005835 xref: FMA:85537 xref: HAO:0000042 xref: ncithesaurus:Extraembryonic_Structure xref: OG:0000292 xref: SCTID:314908006 xref: TAO:0000020 xref: TGMA:0001843 xref: XAO:0004005 xref: ZFA:0000020 is_a: UBERON:0000061 ! implied link automatically realized ! anatomical structure relationship: adjacent_to UBERON:0002050 relationship: existence_starts_and_ends_during UBERON:0000068 intersection_of: UBERON:0000061 ! anatomical structure intersection_of: adjacent_to UBERON:0002050 ! embryonic structure intersection_of: existence_starts_and_ends_during UBERON:0000068 ! embryo stage disjoint_from: UBERON:0002050 ! embryonic structure [Term] id: UBERON:0000479 name: tissue alt_id: UBERON:CARO_0000043-FBbt_00007003-XAO_0003040-ZFA_0001477 def: "Anatomical structure, that consists of similar cells and intercellular matrix, aggregated according to genetically determined spatial relationships." [CARO:0000043, CARO:MAH, FMA:9637] comment: This class was sourced from CARO, which was initially sourced from FMA. Nomenclature changes have been made. Note also AEO introduces a class AEO:0000013 'single-cell tissue' subset: upper_level synonym: "portion of tissue" EXACT [CARO:0000043] synonym: "simple tissue" EXACT [AEO:0000043] synonym: "tissue portion" EXACT [] xref: AAO:0000607 xref: AAO:0010054 xref: AEO:0000043 xref: BILA:0000043 xref: CARO:0000043 xref: EHDAA2:0003043 xref: FBbt:00007003 xref: FMA:9637 xref: galen:Tissue xref: HAO:0000043 xref: MA:0003002 xref: MESH:A.10 xref: ncithesaurus:Normal_Tissue xref: ncithesaurus:Tissue xref: NIF_GrossAnatomy:birnlex_19 xref: TAO:0001477 xref: TGMA:0001844 xref: WBbt:0005729 xref: XAO:0003040 xref: ZFA:0001477 is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0000480 name: anatomical group alt_id: UBERON:CARO_0000054-XAO_0003001-ZFA_0001512 def: "Anatomical structure consisting of at least two non-overlapping organs, multi-tissue aggregates or portion of tissues or cells of different types that does not constitute an organism, organ, multi-tissue aggregate, or portion of tissue." [CARO:0000054, CARO:MAH] subset: upper_level xref: AAO:0010008 xref: AEO:0000054 xref: BILA:0000054 xref: CARO:0000054 xref: EHDAA2:0003054 xref: HAO:0000054 xref: TAO:0001512 xref: TGMA:0001846 xref: XAO:0003001 xref: ZFA:0001512 is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0000481 name: multi-tissue structure alt_id: UBERON:CARO_0000055-FBbt_00007010-XAO_0003037-ZFA_0001488 def: "Anatomical structure that has as its parts two or more portions of tissue of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona-fide boundaries from other distinct structural units of different types." [CARO:0000055, CARO:MAH] subset: upper_level xref: AAO:0010048 xref: AEO:0000055 xref: BILA:0000055 xref: CARO:0000055 xref: EHDAA2:0003055 xref: FBbt:00007010 xref: HAO:0000055 xref: TAO:0001488 xref: TGMA:0001847 xref: XAO:0003037 xref: ZFA:0001488 is_a: UBERON:0000061 ! anatomical structure relationship: has_part UBERON:0000479 ! tissue [Term] id: UBERON:0000482 name: basal lamina alt_id: UBERON:CARO_0000065-FMA_62918-ZFA_0001485 def: "Acellular anatomical structure that consists of a thin sheet of fibrous proteins that underlie and support the cells of an epithelium. It separates the cells of an epithelium from any underlying tissue." [CARO:MAH, Wikipedia:Basal_lamina] comment: TODO - use GO. subset: uberon_slim subset: vertebrate_core synonym: "basal lamina of connective tissue" EXACT [] xref: AAO:0010269 xref: AEO:0000065 xref: BILA:0000065 xref: CARO:0000065 xref: EHDAA2:0003065 xref: FMA:62918 xref: GO:0005605 xref: HAO:0000065 xref: MESH:A.10.272.220 xref: ncithesaurus:Basal_Lamina xref: NIF_Subcellular:sao1397492660 xref: TAO:0001485 xref: TGMA:0001850 xref: WBbt:0005756 xref: XAO:0003163 xref: ZFA:0001485 is_a: UBERON:0000476 ! acellular anatomical structure relationship: adjacent_to UBERON:0000483 ! epithelium [Term] id: UBERON:0000483 name: epithelium alt_id: UBERON:CARO_0000066-FBbt_00007005-FMA_9639-XAO_0003045-ZFA_0001486 def: "Portion of tissue, that consists of one or more layers of epithelial cells connected to each other by cell junctions and which is underlain by a basal lamina. Examples: simple squamous epithelium, glandular cuboidal epithelium, transitional epithelium, myoepithelium[CARO]." [CARO:MAH, Wikipedia:Epithelium] subset: uberon_slim subset: vertebrate_core synonym: "epithelial tissue" EXACT [] synonym: "portion of epithelium" EXACT [FMA:9639] xref: AAO:0000144 xref: AAO:0010055 xref: AEO:0000066 xref: BILA:0000066 xref: BTO:0000416 xref: CARO:0000066 xref: EHDAA2:0003066 xref: FBbt:00007005 xref: FMA:9639 xref: GAID:402 xref: HAO:0000066 xref: MESH:A.10.272 xref: ncithesaurus:Epithelium xref: OG:0000387 xref: SCTID:31610004 xref: TAO:0001486 xref: XAO:0003045 xref: ZFA:0001486 is_a: UBERON:0000119 ! implied link automatically realized ! cell layer [Term] id: UBERON:0000484 name: simple cuboidal epithelium alt_id: UBERON:CARO_0000067-FMA_45566-ZFA_0001497 def: "Unilaminar epithelium that consists of a single layer of cuboidal cells." [CARO:MAH, Wikipedia:Simple_cuboidal_epithelium] subset: uberon_slim subset: vertebrate_core synonym: "epithelium simplex cuboideum" EXACT [] xref: AAO:0010064 xref: AEO:0000067 xref: BILA:0000067 xref: CARO:0000067 xref: EHDAA2:0003067 xref: FMA:45566 xref: HAO:0000067 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d0/Gray1133.png/200px-Gray1133.png xref: ncithesaurus:Simple_Cuboidal_Epithelium xref: TAO:0001497 xref: XAO:0004009 xref: ZFA:0001497 is_a: UBERON:0000490 ! unilaminar epithelium [Term] id: UBERON:0000485 name: simple columnar epithelium alt_id: UBERON:CARO_0000068-FMA_45567-ZFA_0001496 def: "Unilaminar epithelium, which consists of a single layer of columnar cells. Examples: ciliated columnar epithelium, gastric epithelium, microvillus columnar epithelium.[FMA]" [CARO:MAH, FMA:FMA, Wikipedia:Simple_columnar_epithelium] subset: uberon_slim subset: vertebrate_core synonym: "columnar epithlium" EXACT [AEO:0000068] synonym: "epithelium simplex columnare" EXACT [] synonym: "simple columnar epithelium" EXACT [] xref: AAO:0010063 xref: AEO:0000068 xref: BILA:0000068 xref: CARO:0000068 xref: FBbt:00007027 xref: FMA:45567 xref: HAO:0000068 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Gray1059.png/200px-Gray1059.png xref: ncithesaurus:Simple_Columnar_Epithelium xref: TAO:0001496 xref: XAO:0004008 xref: ZFA:0001496 is_a: UBERON:0000490 ! unilaminar epithelium [Term] id: UBERON:0000486 name: multilaminar epithelium alt_id: UBERON:CARO_0000069-FMA_45562-ZFA_0001494 def: "Epithelium which consists of more than one layer of epithelial cells that may or may not be in contact with a basement membrane. Examples: keratinized stratified squamous epithelium, ciliated stratified columnar epithelium.[FMA]" [CARO:MAH, FMA:FMA, Wikipedia:Stratified_epithelium] subset: uberon_slim subset: vertebrate_core synonym: "laminated epithelium" RELATED [BTO:0002074] synonym: "stratified epithelium" EXACT [] xref: AAO:0010059 xref: AEO:0000069 xref: BILA:0000069 xref: BTO:0002074 xref: CARO:0000069 xref: EHDAA2:0003069 xref: FMA:45562 xref: HAO:0000069 xref: ncithesaurus:Stratified_Epithelium xref: SCTID:309044005 xref: TAO:0001494 xref: XAO:0004006 xref: ZFA:0001494 is_a: UBERON:0000483 ! epithelium [Term] id: UBERON:0000487 name: simple squamous epithelium alt_id: UBERON:CARO_0000070-FMA_45565-ZFA_0001498 def: "Unilaminar epithelium which consists of a single layer of squamous cells. Examples: pulmonary alveolar epithelium, endothelium.[FMA]" [CARO:MAH, FMA:45565, Wikipedia:Simple_squamous_epithelium] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "epithelium simplex squamosum" EXACT [] xref: AAO:0010066 xref: AEO:0000070 xref: BILA:0000070 xref: BTO:0002073 xref: CARO:0000070 xref: EHDAA2:0003070 xref: FMA:45565 xref: HAO:0000070 xref: ncithesaurus:Simple_Squamous_Epithelium xref: TAO:0001498 xref: XAO:0004010 xref: ZFA:0001498 is_a: UBERON:0000490 ! implied link automatically realized ! unilaminar epithelium is_a: UBERON:0006914 ! implied link automatically realized ! squamous epithelium [Term] id: UBERON:0000488 name: atypical epithelium alt_id: UBERON:CARO_0000071-FMA_61741-ZFA_0001493 def: "Epithelium that consists of epithelial cells not arranged in one ore more layers." [CARO:MAH] subset: vertebrate_core synonym: "heterogenous epithelium" EXACT [] xref: AAO:0010057 xref: AEO:0000071 xref: BILA:0000071 xref: CARO:0000071 xref: EHDAA2:0003071 xref: FMA:61741 xref: HAO:0000071 xref: TAO:0001493 xref: XAO:0004004 xref: ZFA:0001493 is_a: UBERON:0000483 ! epithelium [Term] id: UBERON:0000489 name: cavitated compound organ alt_id: UBERON:CARO_0000072-ZFA_0001490 def: "Compound organ that contains one or more macroscopic anatomical spaces." [CARO:MAH] subset: organ_slim subset: upper_level xref: AAO:0010016 xref: AEO:0000072 xref: BILA:0000072 xref: CARO:0000072 xref: EHDAA2:0003072 xref: HAO:0000072 xref: TAO:0001490 xref: TGMA:0001857 xref: XAO:0003165 xref: ZFA:0001490 is_a: UBERON:0003103 ! implied link automatically realized ! compound organ relationship: has_part UBERON:0002553 intersection_of: UBERON:0003103 ! compound organ intersection_of: has_part UBERON:0002553 ! anatomical cavity [Term] id: UBERON:0000490 name: unilaminar epithelium alt_id: UBERON:CARO_0000073-FMA_45561-ZFA_0001495 def: "Epithelium which consists of a single layer of epithelial cells. Examples: endothelium, mesothelium, glandular squamous epithelium.[FMA]" [CARO:MAH, FMA:45561] subset: vertebrate_core synonym: "simple epithelium" EXACT [] xref: AAO:0010062 xref: AEO:0000073 xref: BILA:0000073 xref: BTO:0002073 xref: CARO:0000073 xref: EHDAA2:0003073 xref: FMA:45561 xref: HAO:0000073 xref: ncithesaurus:Simple_Epithelium xref: SCTID:309043004 xref: TAO:0001495 xref: XAO:0004007 xref: ZFA:0001495 is_a: UBERON:0000483 ! epithelium [Term] id: UBERON:0000491 name: solid compound organ alt_id: UBERON:CARO_0000074-ZFA_0001491 def: "Compound organ that does not contain macroscopic anatomical spaces." [CARO:MAH] subset: organ_slim subset: upper_level xref: AAO:0010019 xref: AEO:0000074 xref: BILA:0000074 xref: CARO:0000074 xref: EHDAA2:0003074 xref: HAO:0000074 xref: TAO:0001491 xref: TGMA:0001859 xref: XAO:0003164 xref: ZFA:0001491 is_a: UBERON:0003103 ! compound organ [Term] id: UBERON:0000569 name: ileocecal valve def: "The ileocecal valve is a sphincter muscle situated at the junction of the small intestine (ileum) and the large intestine. Its critical function is to limit the reflux of colonic contents into the ileum." [Wikipedia:Ileocecal_valve] synonym: "Tulp's valve" RELATED [Wikipedia:Ileocecal_valve] synonym: "valva ileocaecalis (valva ilealis)" EXACT [FMA:15973] xref: FMA:15973 xref: galen:IleocecalValve xref: ncithesaurus:Ileocecal_Valve xref: SCTID:362153007 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003978 {source="Obol"} ! valve is_a: UBERON:0004590 {source="Wikipedia"} ! sphincter muscle relationship: part_of UBERON:0001073 {source="FMA"} ! ileocecal junction [Term] id: UBERON:0000642 name: suspensory ligament of duodenum def: "Ligament that connects the duodenum of the small intestines to the diaphragm. It contains a slender band of skeletal muscle from the diaphragm and a fibromuscular band of smooth muscle from the horizontal and ascending parts of the duodenum. When it contracts, the suspensory muscle of the duodenum widens the angle of the duodenojejunal flexure, allowing movement of the intestinal contents It arises from the right crus as it passes around the esophagus, continues as connective tissue around the stems of the celiac trunk and superior mesenteric artery and inserts into the third and fourth portions of the duodenum and frequently into the duodenojejunal (DJ) flexure (between the duodenum and the jejunum) as well. " [Wikipedia:Suspensory_muscle_of_duodenum] comment: an especially important landmark to note when looking at the bowel for the presence of malrotation of the gut, a syndrome often suspected in young children when they have episodes of recurrent vomiting. Visualizing a normal location of the ligament of Treitz in radiological images is critical in ruling out malrotation of the gut in a child; it is abnormally located when malrotation is present. An abnormally low and fixed position of the ligament of Treitz is a known cause of superior mesenteric artery syndrome. However, identifying it on a CT scan is difficult. Hematemesis (blood in the vomit) or melena (black tarry stools) usually indicate a gastrointestinal bleed from a location proximal to the ligament. Hematochezia (bright red blood or clots in the stools) usually indicates a gastrointestinal bleed from a location distal to the ligament. synonym: "ligament of Treitz" EXACT [FMA:20509] synonym: "muscle of Treitz" EXACT [FMA:20509] synonym: "musculus suspensorius duodeni" EXACT [FMA:20509] synonym: "suspensory muscle of duodenum" EXACT [FMA:20509] xref: FMA:20509 xref: SCTID:279979000 is_a: UBERON:0008841 {source="Obol"} ! suspensory ligament relationship: attached_to UBERON:0002114 intersection_of: UBERON:0008841 ! suspensory ligament intersection_of: attached_to UBERON:0002114 ! duodenum relationship: attached_to UBERON:0001103 {source="Obol"} ! diaphragm relationship: attached_to UBERON:0002114 {source="Obol"} ! duodenum [Term] id: UBERON:0000711 name: splenius capitis def: "The splenius capitis is a broad, straplike muscle in the back of the neck. It pulls on the base of the skull from vertebrae in the neck and upper thorax. It arises from the lower half of the ligamentum nuchæ, from the spinous process of the seventh cervical vertebra, and from the spinous processes of the upper three or four thoracic vertebræ. The fibers of the muscle are directed upward and lateralward and are inserted, under cover of the Sternocleidomastoideus, into the mastoid process of the temporal bone, and into the rough surface on the occipital bone just below the lateral third of the superior nuchal line. The Splenius Capitis muscle is innervated by the dorsal rami of spinal nerves C3-C4. The splenius muscle is a prime mover for head extension. The splenius capitis can also allow lateral flexion and rotation of the cervical spine." [Wikipedia:Splenius_capitis_muscle] synonym: "splenius capitis muscle" EXACT [Wikipedia:Splenius_capitis_muscle] xref: FMA:22653 xref: SCTID:244850004 is_a: UBERON:0002252 {source="FMA"} ! splenius [Term] id: UBERON:0000908 name: hippocampal commissure alt_id: UBERON:Commissure-MA_0002723 def: "The lateral portions of the body of the fornix are joined by a thin triangular lamina, named the psalterium (lyra). This lamina contains some transverse fibers that connect the two hippocampi across the middle line and constitute the commissure of fornix (hippocampal commissure)." [Wikipedia:Hippocampal_commissure] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "commissura hippocampi" EXACT [FMA:61970, FMA:TA] synonym: "commissure of fornix" RELATED [Wikipedia:Commissure_of_fornix] synonym: "commissure of fornix of forebrain" EXACT [FMA:61970] synonym: "delta fornicis" EXACT [MP:0008221] synonym: "dorsal hippocampal commissure" EXACT [FMA:61970] synonym: "fornical commissure" EXACT [FMA:61970] synonym: "fornix commissure" EXACT [FMA:61970] synonym: "hippocampus commissure" EXACT [MP:0008221] xref: FMA:61970 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/21/Gray747.png/200px-Gray747.png xref: MA:0002723 xref: NIF_GrossAnatomy:birnlex_746 xref: SCTID:369115003 is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon is_a: UBERON:0005340 ! dorsal telencephalic commissure is_a: UBERON:0005970 ! implied link automatically realized ! brain commissure relationship: part_of UBERON:0002316 ! white matter relationship: part_of UBERON:0002437 ! cerebral white matter [Term] id: UBERON:0000910 name: chyme alt_id: UBERON:ENVO_02000026-FMA_62961 def: "Chyme is a bodily fluid consisting of a liquid substance found in the stomach before passing through the pyloric valve and entering the duodenum. It results from the mechanical and chemical breakdown of a bolus and consists of partially digested food, water, hydrochloric acid, and various digestive enzymes." [Wikipedia:Chyme] synonym: "chymus" EXACT [ENVO:02000026] xref: ENVO:02000026 xref: FMA:62961 is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0000911 name: chyle alt_id: UBERON:ENVO_02000030-FMA_61403 def: "Chyle is a bodily fluid consisting of a milky fluid consisting of lymph and emulsified fats; formed in the small intestine during digestion of ingested fats." [http://wordnet.princeton.edu/perl/webwn?s=chyle, Wikipedia:Chyle] xref: ENVO:02000030 xref: FMA:61403 xref: GAID:1187 xref: MESH:A.12.207.630.350 is_a: UBERON:0000463 ! portion of organism substance relationship: has_part UBERON:0002391 ! lymph [Term] id: UBERON:0000912 name: mucus alt_id: UBERON:ENVO_02000040-FMA_66938 def: "Mucus is a bodily fluid consisting of a slippery secretion of the lining of the mucous membranes in the body. It is a viscous colloid containing antiseptic enzymes (such as lysozyme) and immunoglobulins. Mucus is produced by goblet cells in the mucous membranes that cover the surfaces of the membranes. It is made up of mucins and inorganic salts suspended in water." [Wikipedia:Mucus] xref: ENVO:02000040 xref: FMA:66938 xref: GAID:1164 xref: galen:Mucus xref: MESH:A.12.200.503 xref: ncithesaurus:Mucus xref: OpenCyc:Mx4rvVjHq5wpEbGdrcN5Y29ycA is_a: UBERON:0000456 ! secretion relationship: secreted_by UBERON:0000344 ! mucosa [Term] id: UBERON:0000913 name: interstitial fluid alt_id: UBERON:ENVO_02000042-FMA_9673 def: "Interstitial fluid is a bodily fluid consisting of a solution which bathes and surrounds the cells of multicellular animals. It is the main component of the extracellular fluid, which also includes plasma and transcellular fluid." [FMA:9673, Wikipedia:Interstitial_fluid] synonym: "intercellular fluid" EXACT [ENVO:02000042] synonym: "tissue fluid" EXACT [ENVO:02000042] xref: ENVO:02000042 xref: FMA:9673 is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0000914 name: organismal segment alt_id: UBERON:FBbt_00000003-FMA_11367-MIAA_0000271 def: "One of the repeated divisions of the whole organism." [FB:gg, Wikipedia:Segmentation_(biology)] comment: editor note: review this post-CARO2 subset: uberon_slim synonym: "segment" EXACT [FBbt:00000003] xref: FBbt:00000003 xref: HAO:0000929 xref: MAT:0000271 xref: MIAA:0000271 is_a: UBERON:0000475 ! organism subdivision [Term] id: UBERON:0000915 name: thoracic segment of trunk alt_id: UBERON:FBbt_00000015-FMA_9576-MA_0000022-MIAA_0000295 def: "Organismal subdivision of body that lies between the head and the abdomen [Wikipedia]." [Wikipedia:Thorax] comment: todo - taxonomic constraints. Originally this was defined loosely to include insect thorax but the value of such a high-level grouping class is dubious. Note that FMA distinsguishes between thorax and thoracic region of trunk subset: uberon_slim synonym: "thorax" RELATED [MA:0000022] synonym: "upper body" RELATED [] xref: FMA:259209 xref: MA:0000022 xref: SCTID:302551006 is_a: UBERON:0009569 {source="FMA"} ! subdivision of trunk relationship: spatially_disjoint_from UBERON:0000026 ! appendage relationship: spatially_disjoint_from UBERON:0000033 ! head relationship: spatially_disjoint_from UBERON:0002417 ! abdominal segment of trunk [Term] id: UBERON:0000916 name: abdomen alt_id: UBERON:FBbt_00000020-FMA_9577-MA_0000029-MIAA_0000298 def: "In vertebrates such as mammals the abdomen (belly) constitutes the part of the body between the thorax (chest) and pelvis. The region enclosed by the abdomen is termed the abdominal cavity." [Wikipedia:Abdomen] comment: Taxon notes: Vertebrate specific. In arthropods 'abdomen' is the most distal section of the body which lies behind the thorax or cephalothorax. If need be we can introduce some grouping class subset: uberon_slim synonym: "abdominopelvic region" EXACT [FMA:9577] synonym: "abdominopelvis" EXACT [FMA:9577] synonym: "adult abdomen" RELATED [] synonym: "belly" RELATED [] xref: BTO:0000020 xref: EFO:0000968 xref: EV:0100011 xref: FMA:9577 xref: GAID:16 xref: galen:Abdomen xref: MA:0000029 xref: MAT:0000298 xref: MESH:A.01.047 xref: MIAA:0000298 xref: OpenCyc:Mx4rvVjgyZwpEbGdrcN5Y29ycA xref: SCTID:302553009 is_a: UBERON:0009569 ! subdivision of trunk relationship: part_of UBERON:0002417 {source="MA"} ! abdominal segment of trunk [Term] id: UBERON:0000917 name: abdominal segment alt_id: UBERON:FBbt_00000021-SPD_0000055 synonym: "segment of abdomen" EXACT [OBOL:automatic] xref: FBbt:00000021 xref: HAO:0000016 xref: SPD:0000055 is_obsolete: true consider: UBERON:0002417 [Term] id: UBERON:0000918 name: yolk alt_id: UBERON:FBbt_00000035-MIAA_0000335-XAO_0000281 def: "The nutritive substance contained in the egg." [FB:gg] synonym: "vegetal yolk mass" BROAD [] synonym: "yolk cell" RELATED [] xref: BTO:0000371 xref: FBbt:00000035 xref: GO:0060417 xref: MAT:0000335 xref: MIAA:0000335 xref: TAO:0000084 xref: XAO:0000281 xref: ZFA:0000084 is_obsolete: true consider: UBERON:0007378 [Term] id: UBERON:0000919 name: lipid droplet alt_id: UBERON:FBbt_00000037-FMA_62962 xref: FBbt:00000037 xref: FMA:62962 xref: GO:0005811 is_obsolete: true [Term] id: UBERON:0000920 name: egg chorion alt_id: UBERON:FBbt_00000038-FMA_80224-ZFA_0000329 alt_id: UBERON:FMA_18674-MA_0001715 def: "A protective, noncellular membrane that surrounds the eggs of various animals including insects and fish [GO]." [GO:0042600, Wikipedia:Chorion_(egg)] subset: dubious_grouping subset: uberon_slim subset: vertebrate_core synonym: "chorion" RELATED [] synonym: "chorion (egg)" EXACT [] xref: FBbt:00000038 xref: TAO:0000329 xref: TGMA:0000681 xref: ZFA:0000329 is_a: UBERON:0000476 ! acellular anatomical structure is_a: UBERON:0000478 ! extraembryonic structure disjoint_from: UBERON:0003124 ! chorion relationship: surrounds UBERON:0003125 ! vitelline membrane [Term] id: UBERON:0000921 name: pronucleus alt_id: UBERON:FBbt_00000048-FMA_84673 def: "." [Wikipedia:Pronucleus] xref: FBbt:00000048 xref: FMA:84673 xref: GO:0045120 is_obsolete: true [Term] id: UBERON:0000922 name: embryo alt_id: UBERON:FBbt_00000052-FMA_69068-MIAA_0000019-XAO_0000113 def: "Anatomical entity that comprises the organism in the early stages of growth and differentiation that are characterized by cleavage, the laying down of fundamental tissues, and the formation of primitive organs and organ systems. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant." [BTO:0000379, FB:FBrf0039741, FB:FBrf0041814, GO:0009790, Wikipedia:Embryo] comment: Obsoleted in ZFA. Note that embryo is not classified as an embryonic structure - an embryonic structure is only the parts of an embryo subset: uberon_slim subset: vertebrate_core synonym: "developing organism" RELATED [BILA:0000056] synonym: "developmental tissue" RELATED [] synonym: "embryonic organism" EXACT [BILA:0000056] xref: AAO:0011035 xref: AEO:0000169 xref: BILA:0000056 xref: BTO:0000379 xref: EFO:0001367 xref: EHDAA:38 xref: EHDAA2:0003236 xref: EMAPA:16039 xref: FBbt:00000052 xref: FMA:69068 xref: GAID:963 xref: MAT:0000226 xref: MESH:A.16.254 xref: MIAA:0000019 xref: ncithesaurus:Embryo xref: OGEM:000001 xref: OpenCyc:Mx4rwP1ceZwpEbGdrcN5Y29ycA xref: SCTID:57991002 xref: XAO:0000113 xref: ZFA:0000103 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0000468 ! implied link automatically realized ! multi-cellular organism relationship: existence_ends_with UBERON:0000068 relationship: existence_starts_with UBERON:0000068 intersection_of: UBERON:0000468 ! multi-cellular organism intersection_of: existence_ends_with UBERON:0000068 ! embryo stage intersection_of: existence_starts_with UBERON:0000068 ! embryo stage [Term] id: UBERON:0000923 name: germ layer alt_id: UBERON:FBbt_00000110-FMA_69069 alt_id: UBERON:XAO_0003011-ZFA_0001122 def: "A layer of cells produced during the process of gastrulation during the early development of the animal embryo, which is distinct from other such layers of cells, as an early step of cell differentiation. The three types of germ layers are the endoderm, ectoderm, and mesoderm." [Wikipedia:Germ_layer] subset: uberon_slim subset: vertebrate_core synonym: "embryonic germ layer" RELATED [] synonym: "embryonic germ layers" RELATED [] synonym: "embryonic tissue" BROAD [FMA:69069] synonym: "germinal layer" EXACT [ncithesaurus:Germinal_Layer] synonym: "primary germ layer" EXACT [GO:0001704, ZFA:0001122] xref: AAO:0000480 xref: BILA:0000035 xref: BTO:0000556 xref: FBbt:00000110 xref: FMA:69069 xref: GAID:1303 xref: MESH:A.16.254.425 xref: ncithesaurus:Embryonic_Tissue xref: ncithesaurus:Germinal_Layer xref: OG:0001223 xref: TAO:0001122 xref: XAO:0003011 xref: ZFA:0001122 is_a: UBERON:0000479 {source="GO"} ! tissue is_a: UBERON:0002050 {source="FMA"} ! embryonic structure is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue relationship: develops_from UBERON:0002532 ! epiblast [Term] id: UBERON:0000924 name: ectoderm alt_id: UBERON:FBbt_00000111-FMA_69070-MIAA_0000173-XAO_0000001-ZFA_0000016 def: "Primary germ layer that is the outer of the embryo's three germ layers and gives rise to epidermis and neural tissue." [Wikipedia:Ectoderm] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "embryonic ectoderm" EXACT [OG:0000153] xref: AAO:0000137 xref: BILA:0000036 xref: BTO:0000315 xref: EFO:0000414 xref: EHDAA2:0000428 xref: EMAPA:16069 xref: EV:0100003 xref: FBbt:00000111 xref: FMA:69070 xref: GAID:1304 xref: MAT:0000155 xref: MAT:0000173 xref: MESH:A.16.254.425.273 xref: MIAA:0000173 xref: ncithesaurus:Ectoderm xref: OG:0000153 xref: SCTID:362851007 xref: TAO:0000016 xref: XAO:0000001 xref: ZFA:0000016 is_a: UBERON:0000923 ! germ layer [Term] id: UBERON:0000925 name: endoderm alt_id: UBERON:FBbt_00000125-FMA_69071-MIAA_0000175-XAO_0000090-ZFA_0000017 def: "Primary germ layer that lies remote from the surface of the embryo and gives rise to internal tissues such as gut." [Wikipedia:Endoderm] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "entoderm" RELATED [] xref: AAO:0000139 xref: BILA:0000038 xref: BTO:0000800 xref: EFO:0002545 xref: EHDAA2:0000436 xref: EV:0100005 xref: FBbt:00000125 xref: FMA:69071 xref: GAID:1305 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/df/Gray10.png/200px-Gray10.png xref: MAT:0000175 xref: MESH:A.16.254.425.407 xref: MIAA:0000175 xref: ncithesaurus:Endoderm xref: OG:0000154 xref: SCTID:362855003 xref: TAO:0000017 xref: XAO:0000090 xref: ZFA:0000017 is_a: UBERON:0000923 ! germ layer [Term] id: UBERON:0000926 name: mesoderm alt_id: UBERON:0003263 alt_id: UBERON:FBbt_00000126-FMA_69072-MIAA_0000174-XAO_0000050-ZFA_0000041 def: "The middle germ layer of the embryo, between the endoderm and ectoderm." [Wikipedia:Mesoderm] comment: Taxon notes: sponges do not seem to have a mesoderm and accordingly Amphimedon lacks transcription factors involved in mesoderm development (Fkh, Gsc, Twist, Snail)[http://www.nature.com/nature/journal/v466/n7307/full/nature09201.html] subset: uberon_slim subset: vertebrate_core synonym: "entire mesoderm" RELATED [SCTID:362854004, UBERON:cjm] synonym: "mesodermal mantle" RELATED [] xref: AAO:0000304 xref: BILA:0000037 xref: BTO:0000839 xref: EFO:0001981 xref: EHDAA:124 xref: EHDAA:140 xref: EHDAA:154 xref: EHDAA:160 xref: EHDAA:168 xref: EHDAA:183 xref: EHDAA2:0001128 xref: EV:0100006 xref: FBbt:00000126 xref: FMA:69072 xref: GAID:522 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e8/Mesoderm.png/200px-Mesoderm.png xref: MAT:0000174 xref: MESH:A.16.254.425.660 xref: MIAA:0000174 xref: ncithesaurus:Mesoderm xref: OG:0000152 xref: SCTID:362854004 xref: TAO:0000041 xref: XAO:0000050 xref: ZFA:0000041 is_a: UBERON:0000923 ! germ layer [Term] id: UBERON:0000927 name: mesectoderm alt_id: UBERON:FBbt_00000136-MIAA_0000243 def: "A double row of cells which are located at the midline from the end of gastrulations. The morphology of these cells is distinct from adjacent ectodermal cells - they are elongated such that one end remains exposed to the outside of the embryo at the mideline while the other end bissects the internalised mesoderm." [FB:FBrf0089570] comment: Split term? The part of the mesenchyme derived from ectoderm, especially from the embryonic neural crest from which the pigment cells, meninges, and most of the branchial cartilages develop.[TFD] subset: uberon_slim synonym: "MesEc" RELATED [] xref: FBbt:00000136 xref: MAT:0000243 xref: MIAA:0000243 is_a: UBERON:0000923 ! germ layer relationship: adjacent_to UBERON:0000924 ! ectoderm [Term] id: UBERON:0000928 name: embryonic segment alt_id: UBERON:FBbt_00000154-MIAA_0000244 comment: This class was created automatically from a combination of ontologies synonym: "segment - embryonic" EXACT [] xref: FBbt:00000154 xref: MAT:0000244 xref: MIAA:0000244 is_a: UBERON:0000914 ! organismal segment is_a: UBERON:0002050 ! implied link automatically realized ! embryonic structure relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0000929 name: pharyngeal branch alt_id: UBERON:FBbt_00000394-FMA_6234 def: "Motor nerve of the pharynx, arises from the upper part of the ganglion nodosum, and consists principally of filaments from the cranial portion of the accessory nerve." [Wikipedia:Pharyngeal_branch_of_vagus_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "pharyngeal branch of inferior vagal ganglion" EXACT [] synonym: "pharyngeal branch of vagus" EXACT [] synonym: "pharyngeal branch of vagus nerve" EXACT [] synonym: "ramus pharyngealis nervi vagalis" EXACT [] synonym: "ramus pharyngeus" EXACT [FMA:6234, FMA:TA] synonym: "tenth cranial nerve pharyngeal branch" EXACT [] synonym: "vagal pharyngeal branch" EXACT [] synonym: "vagus nerve pharyngeal branch" EXACT [] xref: FMA:6234 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5e/Gray791.png/200px-Gray791.png xref: SCTID:280298006 is_a: UBERON:0001021 ! nerve relationship: part_of UBERON:0001005 ! respiratory airway relationship: part_of UBERON:0001759 ! vagus nerve [Term] id: UBERON:0000930 name: stomodeum alt_id: UBERON:FBbt_00000439-ZFA_0001290 def: "Anterior part of the embryonic alimentary canal formed as an invagination of the ectoderm; the future mouth[ZFA]. In humans, a depression between the brain and the pericardium in an embryo, and is the precursor of the mouth and the anterior lobe of the pituitary gland. The stomodeum is lined by ectoderm, and is separated from the anterior end of the fore-gut by the buccopharyngeal membrane. This membrane is devoid of mesoderm, being formed by the apposition of the stomodeal ectoderm with the fore-gut endoderm; at the end of the third week it disappears, and thus a communication is established between the mouth and the future pharynx[WP]. The anterior part of the embryonic digestive system deriving from the stomodeal invagination of the ectoderm[FBbt]." [Wikipedia:Stomodeum] comment: Editor note: consider indicating location. e.g. anterior. Note some AOs place this as part of oral opening, but it's not clear when this structure comes into existence. Taxon note: This class groups together disparate structures as all being the anterior part of the early metazoan digestive tract and precursor of the mouth. However, the developmental processes vary, so this class may be split in future. E.g. in mammals it is a rostral depression surrounded by prominences. Outgrowth of the prominences produces a stomodeal cavity. subset: grouping_class subset: uberon_slim subset: vertebrate_core synonym: "mouth primordium" EXACT [XAO:0000269] synonym: "primitive oral cavity" EXACT [UBERON:cjm] synonym: "stomatodeum" EXACT [Wikipedia:Stomodeum] synonym: "stomodaeum" EXACT [] xref: BTO:0004224 xref: EHDAA2:0001929 xref: EMAPA:16263 xref: FBbt:00000439 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/93/Gray977.png/200px-Gray977.png xref: ncithesaurus:Stomodeum xref: TGMA:0000135 xref: XAO:0000269 xref: ZFA:0001290 is_a: UBERON:0003102 {source="ZFA"} ! surface structure is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: part_of UBERON:0000924 ! ectoderm relationship: part_of UBERON:0007026 ! primitive gut [Term] id: UBERON:0000931 name: proctodeum alt_id: UBERON:FBbt_00000440-WBbt_0006795 def: "Inward fold on the surface of the embryonic ectoderm that develops into part of the anal passage[ZFA]. A proctodeum is the back ectodermal part of an alimentary canal. It is created during embryogenesis by a folding of the outer body wall[WP]." [Wikipedia:Proctodeum] comment: removed WBbt:0006795 - junction between the alimentary and genital tracts in the male. subset: uberon_slim synonym: "proctodaeum" EXACT [] xref: AAO:0011087 xref: FBbt:00000440 xref: ncithesaurus:Proctodeum xref: OG:0000139 xref: SCTID:298233001 xref: TAO:0000066 xref: WBbt:0006795 xref: XAO:0001019 xref: ZFA:0000066 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0003102 ! surface structure is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: develops_into UBERON:0001353 ! anal region relationship: part_of UBERON:0007026 ! primitive gut [Term] id: UBERON:0000932 name: ventral longitudinal muscle alt_id: UBERON:FBbt_00000482-WBbt_0005814 comment: originally unified on basis of terminological similarity xref: FBbt:00000482 xref: WBbt:0005814 is_obsolete: true [Term] id: UBERON:0000933 name: pharyngeal muscle alt_id: UBERON:FBbt_00000487-FMA_46619-MA_0001797 def: "A muscle that forms part of the pharynx." [GO:0043282] comment: todo - add asserted children and check logical definition against these; e.g. is stylopharyngeus part of the pharynx? synonym: "muscle of pharynx" EXACT [] synonym: "muscle organ of pharynx" EXACT [OBOL:automatic] synonym: "musculus pharyngis" RELATED [BTO:0001048] synonym: "pharynx muscle" EXACT [] synonym: "pharynx muscle organ" EXACT [OBOL:automatic] xref: BTO:0001048 xref: FMA:46619 xref: GAID:154 xref: MA:0001797 xref: MESH:A.02.633.567.800 xref: ncithesaurus:Pharyngeal_Muscle xref: SCTID:244798004 xref: ZFA:0000172 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003831 ! implied link automatically realized ! respiratory system muscle relationship: part_of UBERON:0006562 intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0006562 ! pharynx relationship: part_of UBERON:0004467 ! musculature of pharynx [Term] id: UBERON:0000934 name: ventral nerve cord alt_id: UBERON:FBbt_00001102-MIAA_0000339-WBbt_0005829 def: "The pair of closely united ventral longitudinal nerves with their segmental ganglia that is characteristic of many elongate invertebrates (as earthworms)[BTO]. A large process bundle that runs along the vental mid-line extending from the ventral region of the nerve ring[WB]. The ventral cord is one of the distinguishing traits of the central nervous system of all arthropods (such as insects, crustaceans and arachnids) as well as many other invertebrates, such as the annelid worms[GO]." [BTO:0002328, GO:0007419, WB:Paper00000938, Wikipedia:Ventral_nerve_cord] comment: The ventral nerve cords make up the nervous system of some phyla of the invertebrates, particularly within the nematodes, annelids and the arthropods. It usually consists of cerebral ganglia anteriorly with the nerve cords running down the ventral ('belly', as opposed to back) plane of the organism. This characteristic is important in qualifying the difference compared to the chordates, which have a dorsal nerve cord. Ventral nerve cords from anterior to posterior (the thoracic and abdominal tagma in the arthropods) are made up of segmented ganglia that are connected by a tract of nerve fibers passing from one side to the other of the nerve cord called commissures. The complete system bears some likeness to a rope ladder. In some animals the bilateral ganglia are fused into a single large ganglion per segment. This characteristic is found mostly in the insects. subset: uberon_slim synonym: "ventral cord" EXACT [GO:0007419] xref: BTO:0002328 xref: EFO:0000896 xref: FBbt:00001102 xref: MAT:0000339 xref: MIAA:0000339 xref: WBbt:0005829 is_a: UBERON:0005053 ! nerve cord [Term] id: UBERON:0000935 name: anterior commissure alt_id: UBERON:FBbt_00001105-FMA_61961-MA_0002722-ZFA_0001108 def: "bundle of nerve fibers (white matter), connecting the two cerebral hemispheres across the midline, and placed in front of the columns of the fornix. The great majority of fibers connecting the two hemispheres travel through the corpus callosum, which is over 10 times larger than the anterior commissure, and other routes of communication pass through the hippocampal commissure or, indirectly, via subcortical connections. Nevertheless, the anterior commissure is a significant pathway that can be clearly distinguished in the brains of all mammals." [Wikipedia:Anterior_commissure] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "commissura anterior" RELATED [] synonym: "commissura rostral" RELATED [] synonym: "commissura rostralis" EXACT [] synonym: "precommisure" RELATED [Wikipedia:Anterior_commisure] synonym: "rostral commissure" RELATED [] xref: BM:Tel-AC xref: BTO:0002169 xref: EMAPA:19038 xref: FMA:61961 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b4/Gray744.png/200px-Gray744.png xref: MA:0002722 xref: ncithesaurus:Anterior_Commissure xref: NIF_GrossAnatomy:Class_4 xref: SCTID:369119009 xref: TAO:0001108 xref: ZFA:0001108 is_a: UBERON:0002473 ! intercerebral commissure is_a: UBERON:0005341 ! ventral commissure [Term] id: UBERON:0000936 name: posterior commissure alt_id: UBERON:FBbt_00001120-FMA_62072-MA_0002743-ZFA_0000320 def: "Rounded band of white fibers crossing the middle line on the dorsal aspect of the upper end of the cerebral aqueduct. It is important in the bilateral pupillary light reflex. Its fibers acquire their medullary sheaths early, but their connections have not been definitely determined. Most of them have their origin in a nucleus, the nucleus of the posterior commissure (nucleus of Darkschewitsch), which lies in the central gray substance of the upper end of the cerebral aqueduct, in front of the nucleus of the oculomotor nerve. Some are probably derived from the posterior part of the thalamus and from the superior colliculus, whereas others are believed to be continued downward into the medial longitudinal fasciculus. The posterior commissure interconnects the pretectal nuclei, mediating the consensual pupillary light reflex[WP].Diencephalic tract which is located in the vicinity of the dorsal diencephalon and mesencephalon and connects the pretectal nuclei. From Neuroanatomy of the Zebrafish Brain[ZFA]." [Wikipedia:Posterior_commissure, ZFA:0000320] subset: uberon_slim subset: vertebrate_core synonym: "caudal commissure" EXACT [FMA:62072, ZFA:0000320] synonym: "epithalamic commissure" EXACT [FMA:62072] xref: BM:MB-Tec-PC xref: FMA:62072 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d7/Gray715.png/200px-Gray715.png xref: MA:0002743 xref: ncithesaurus:Posterior_Commissure xref: NIF_GrossAnatomy:birnlex_1026 xref: TAO:0000320 xref: ZFA:0000320 is_a: UBERON:0001020 ! commissure is_a: UBERON:0005970 ! implied link automatically realized ! brain commissure relationship: part_of UBERON:0002298 ! brainstem [Term] id: UBERON:0000937 name: proneural cluster alt_id: UBERON:FBbt_00001135-ZFA_0000068 comment: obsoleted because inconsistencies arise due to ZFA term being both embryonic and extraembryonic synonym: "proneural clusters" RELATED [ZFA:0000068] xref: FBbt:00001135 xref: ZFA:0000068 is_obsolete: true [Term] id: UBERON:0000939 name: imaginal disc alt_id: UBERON:FBbt_00001761-MIAA_0000064 def: "A tissue in the larva which gives rise to the adult external cuticle." [FB:gg, Wikipedia:Imaginal_disc] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "imaginal disk" RELATED [] xref: BTO:0004658 xref: FBbt:00001761 xref: MAT:0000064 xref: MIAA:0000064 is_a: UBERON:0000481 ! multi-tissue structure [Term] id: UBERON:0000941 name: cranial nerve II alt_id: UBERON:FBbt_00001956-FMA_50863-MA_0001097-XAO_0000188-ZFA_0000435 def: "Cranial nerve which is comprised of retinal ganglion cell axons running posterior medially towards the optic chiasm, at which some of the axons cross the midline and after which the structure is termed the optic tract. Transmits visual information from the retina to the brain[ZFA]." [ISBN:0471209627, Wikipedia:Optic_nerve, ZFIN:curator] comment: todo - determine the precise relationship between CN II and the CNS subset: uberon_slim subset: vertebrate_core synonym: "CN-II" RELATED [] synonym: "nervus opticus [ii]" EXACT [FMA:50863, FMA:TA] synonym: "optic" RELATED [] synonym: "optic II" EXACT [EHDAA2:0001313] synonym: "optic II nerve" EXACT [] synonym: "optic nerve" BROAD SENSU [FMA:50863] synonym: "optic nerve [II]" EXACT [] synonym: "second cranial nerve" EXACT [] xref: AAO:0010345 xref: EHDAA:6788 xref: EHDAA2:0001313 xref: EMAPA:17575 xref: EMAPA:17846 xref: FMA:50863 xref: GAID:831 xref: MA:0001097 xref: MESH:A.08.800.800.120.680 xref: ncithesaurus:Optic_Nerve xref: NIF_GrossAnatomy:birnlex_1640 xref: OG:0000543 xref: OpenCyc:Mx4rvVjLm5wpEbGdrcN5Y29ycA xref: TAO:0000435 xref: XAO:0000188 xref: ZFA:0000435 is_a: UBERON:0002464 ! nerve trunk is_a: UBERON:0004904 ! implied link automatically realized ! optic nerve relationship: continuous_with UBERON:0000959 relationship: continuous_with UBERON:0000966 intersection_of: UBERON:0001785 ! cranial nerve intersection_of: continuous_with UBERON:0000959 ! optic chiasma intersection_of: continuous_with UBERON:0000966 ! retina relationship: continuous_with UBERON:0003098 ! optic stalk relationship: part_of UBERON:0002104 ! visual system [Term] id: UBERON:0000942 name: frontal nerve alt_id: UBERON:FBbt_00002630-FMA_52638 def: "The frontal nerve is the largest branch of the ophthalmic, and may be regarded, both from its size and direction, as the continuation of the nerve. It enters the orbit through the supraorbital foramen, and runs forward between the Levator palpebræ superioris and the periosteum. Midway between the apex and base of the orbit it divides into two branches, supratrochlear nerve and supraorbital nerve. [WP,unvetted]." [Wikipedia:Frontal_nerve] subset: uberon_slim xref: FMA:52638 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/45/Gray787.png/200px-Gray787.png xref: ncithesaurus:Frontal_Nerve xref: SCTID:280219004 is_a: UBERON:0001021 ! nerve [Term] id: UBERON:0000943 name: labial sensillum alt_id: UBERON:FBbt_00002721-WBbt_0005107 xref: FBbt:00002721 xref: WBbt:0005107 is_obsolete: true [Term] id: UBERON:0000944 name: dorsal branch alt_id: UBERON:FBbt_00003051-FMA_76733 synonym: "dorsal vein" EXACT [] synonym: "ramus dorsalis" EXACT [FMA:76733, FMA:TA] xref: FBbt:00003051 xref: FMA:76733 is_obsolete: true [Term] id: UBERON:0000945 name: stomach alt_id: UBERON:FBbt_00003138-FMA_7148-MA_0000353-MIAA_0000051-XAO_0000128 def: "Internal organ that is the dilated portion of the alimentary tract situated between the esophagus and the beginning of the duodenum. It produces gastric juices involved in the breakdown of food[XAO]. Organ with organ cavity which is continuous proximally with the esophagus and distally with the small intestine[FMA]." [FB:FBrf0007735, OMD:stomach, Wikipedia:Stomach] comment: fly has adult midgut - TODO check. Zebrafish is functionally stomach-less, but may retain ontogenic footprint. TADS:0000172 adult stomach. add functionally defined class? subset: major_organ subset: organ_slim subset: uberon_slim subset: vertebrate_core synonym: "anterior intestine" RELATED [] synonym: "gaster" RELATED [BTO:0001307] synonym: "mesenteron" RELATED [] synonym: "stomach" RELATED [] synonym: "ventriculus" RELATED [] xref: AAO:0000579 xref: ANISEED:1235297 xref: BTO:0001307 xref: EFO:0000837 xref: EHDAA:2993 xref: EHDAA2:0001915 xref: EMAPA:17021 xref: EMAPA:18889 xref: EV:0100070 xref: FMA:7148 xref: GAID:293 xref: galen:Stomach xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e0/Stomach_diagram.svg/200px-Stomach_diagram.svg.png xref: MA:0000353 xref: MAT:0000051 xref: MESH:A.03.492.766 xref: MIAA:0000051 xref: ncithesaurus:Stomach xref: OG:0000408 xref: OpenCyc:Mx4rvVjlqpwpEbGdrcN5Y29ycA xref: SCTID:181246003 xref: TAO:0002121 xref: XAO:0000128 is_a: UBERON:0000062 ! organ is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0001041 ! foregut relationship: part_of UBERON:0001555 ! digestive tract relationship: part_of UBERON:0005409 ! gastrointestinal system [Term] id: UBERON:0000946 name: cardial valve alt_id: UBERON:FBbt_00003140-FMA_7110-MA_0000086-ZFA_0005065 def: "Flap of tissue that prevents regurgitation of blood from the ventricles to the atria or from the pulmonary arteries or aorta to the ventricles." [Wikipedia:Cardiac_valve] comment: Rector et al: One might be tempted to define “heart valve” equivalently to “valve in the heart”, and “valve” as a “structure which functions as a valve”. But this combination results in the “foramen ovale” being classified as a kind of “heart valve”, since it is undoubtedly located in the heart and functions as a valve subset: uberon_slim subset: vertebrate_core synonym: "cardiac valve" RELATED [] synonym: "heart valve" EXACT [] synonym: "heart valves" RELATED [] synonym: "stomodaeal valve" RELATED [] synonym: "valve of heart" EXACT [] xref: BTO:0000564 xref: EMAPA:17869 xref: EV:0100024 xref: FMA:7110 xref: GAID:176 xref: galen:HeartValve xref: MA:0000086 xref: MESH:A.07.541.510 xref: ncithesaurus:Cardiac_Valve xref: OG:0000818 xref: OpenCyc:Mx4rv8oyuJwpEbGdrcN5Y29ycA xref: SCTID:181285005 xref: TAO:0005065 xref: XAO:0004126 xref: ZFA:0005065 is_a: UBERON:0003978 ! valve is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure disjoint_from: UBERON:0004754 ! foramen ovale of heart relationship: develops_from UBERON:0002062 {source="PMID:15797462"} ! endocardial cushion relationship: part_of UBERON:0000948 ! heart [Term] id: UBERON:0000947 name: aorta alt_id: UBERON:FBbt_00003153-FMA_3734-MA_0000062-MA_0000476-MIAA_0000035-XAO_0003010-ZFA_0000014 def: "Artery carrying blood from the heart to all the organs and other structures of the body, bringing oxygenated blood to all parts of the body in the systemic circulation" [Wikipedia:Aorta] comment: TODO: check dorsal aorta. All amniotes have a broadly similar arrangement to that of humans, albeit with a number of individual variations. In fish, however, there are two separate vessels referred to as aortas. The ventral aorta carries de-oxygenated blood from the heart to the gills; part of this vessel forms the ascending aorta in tetrapods (the remainder forms the pulmonary artery). A second, dorsal aorta carries oxygenated blood from the gills to the rest of the body, and is homologous with the descending aorta of tetrapods. The two aortas are connected by a number of vessels, one passing through each of the gills. Amphibians also retain the fifth connecting vessel, so that the aorta has two parallel arches[WP]. subset: uberon_slim synonym: "adult aorta" EXACT [] synonym: "dorsal aorta" NARROW SENSU [Wikipedia:Aorta#In_other_animals, ZFA:0000014] synonym: "trunk of aortic tree" EXACT [] synonym: "trunk of systemic arterial tree" EXACT [] xref: AAO:0010213 xref: BTO:0000135 xref: EFO:0000265 xref: EMAPA:18601 xref: EV:0100027 xref: FMA:3734 xref: GAID:469 xref: galen:Aorta xref: MA:0000062 xref: MAT:0000035 xref: MESH:A.07.231.114.056 xref: MIAA:0000035 xref: ncithesaurus:Aorta xref: OG:0001523 xref: OpenCyc:Mx4rvVjvTpwpEbGdrcN5Y29ycA xref: SCTID:181298001 xref: XAO:0003010 is_a: UBERON:0001637 {source="BTO"} ! artery is_a: UBERON:0003509 {source="MA"} ! arterial blood vessel is_a: UBERON:0004573 ! implied link automatically realized ! systemic artery relationship: overlaps UBERON:0002224 {source="MA-modified"} ! thoracic cavity relationship: part_of UBERON:0004571 {source="Wikipedia"} ! systemic arterial system [Term] id: UBERON:0000948 name: heart alt_id: UBERON:FBbt_00003154-FMA_7088-MA_0000072-MIAA_0000036-XAO_0000064-ZFA_0000114 def: "a myogenic muscular organ found in the cardiovascular system. It is responsible for pumping blood throughout the blood vessels by repeated, rhythmic contractions. The vertebrate heart is composed of cardiac muscle, which is an involuntary striated muscle tissue found only in this organ, and connective tissue. Primitive fish have a four-chambered heart; however, the chambers are arranged sequentially so that this primitive heart is quite unlike the four-chambered hearts of mammals and birds. The first chamber is the sinus venosus, which collects de-oxygenated blood, from the body, through the hepatic and cardinal veins. From here, blood flows into the atrium and then to the powerful muscular ventricle where the main pumping action takes place. The fourth and final chamber is the conus arteriosus which contains several valves and sends blood to the ventral aorta. The ventral aorta delivers blood to the gills where it is oxygenated and flows, through the dorsal aorta, into the rest of the body. (In tetrapods, the ventral aorta has divided in two; one half forms the ascending aorta, while the other forms the pulmonary artery. In the adult fish, the four chambers are not arranged in a straight row but, instead, form an S-shape with the latter two chambers lying above the former two. This relatively simpler pattern is found in cartilaginous fish and in the more primitive ray-finned fish. In teleosts, the conus arteriosus is very small and can more accurately be described as part of the aorta rather than of the heart proper. The conus arteriosus is not present in any amniotes which presumably having been absorbed into the ventricles over the course of evolution. Similarly, while the sinus venosus is present as a vestigial structure in some reptiles and birds, it is otherwise absorbed into the right atrium and is no longer distinguishable[WP]." [Wikipedia:Heart] comment: note that we use the term 'circulatory organ' for the generic class. Taxon notes:" the ascidian tube-like heart lacks chambers....The ascidian heart is formed after metamorphosis as a simple tube-like structure with a single-layered myoepi- thelium that is continuous with a single-layered pericar- dial wall. It lacks chambers and endocardium.... The innovation of the chambered heart was a key event in vertebrate evolution, because the chambered heart generates one-way blood flow with high pressure, a critical requirement for the efficient blood supply of large-body vertebrates... all extant vertebrates have hearts with two or more chambers (Moorman and Christoffels 2003)" doi:10.1101/gad.1485706 subset: major_organ subset: organ_slim subset: uberon_slim subset: vertebrate_core synonym: "chambered heart" EXACT [UBERON:cjm] synonym: "Herz" RELATED [BTO:0000562] synonym: "vertebrate heart" EXACT [] xref: AAO:0010210 xref: BILA:0000020 xref: BTO:0000562 xref: EFO:0000815 xref: EHDAA:420 xref: EHDAA2:0000738 xref: EMAPA:16105 xref: EV:0100018 xref: FMA:7088 xref: GAID:174 xref: galen:Heart xref: MA:0000072 xref: MAT:0000036 xref: MESH:A.07.541 xref: MIAA:0000036 xref: ncithesaurus:Heart xref: OG:0000276 xref: OpenCyc:Mx4rvVjvDpwpEbGdrcN5Y29ycA xref: SCTID:302509004 xref: TAO:0000114 xref: XAO:0000064 xref: ZFA:0000114 is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0007100 ! implied link automatically realized ! circulatory organ relationship: has_part UBERON:0004151 intersection_of: UBERON:0007100 ! circulatory organ intersection_of: has_part UBERON:0004151 ! cardiac chamber relationship: develops_from UBERON:0004141 ! heart tube relationship: part_of UBERON:0004535 ! cardiovascular system [Term] id: UBERON:0000949 name: endocrine system alt_id: UBERON:FBbt_00003214-FBbt_00005068-FMA_9668-MA_0000012-XAO_0000158-ZFA_0001158 def: "Anatomical system that consists of the glands and parts of glands that produce endocrine secretions and help to integrate and control bodily metabolic activity." [NLM:endocrine+system, Wikipedia:Endocrine_system] subset: uberon_slim subset: vertebrate_core synonym: "endocrine glandular system" EXACT [EHDAA2:0002224] synonym: "endocrine system" EXACT [] synonym: "systema endocrinum" EXACT [] xref: AAO:0010279 xref: EFO:0002969 xref: EHDAA2:0002224 xref: EV:0100128 xref: FBbt:00005068 xref: FMA:9668 xref: GAID:439 xref: MA:0000012 xref: MESH:A.06 xref: ncithesaurus:Endocrine_System xref: OG:0000098 xref: SCTID:278876000 xref: TAO:0001158 xref: XAO:0000158 xref: ZFA:0001158 is_a: UBERON:0000467 ! implied link automatically realized ! anatomical system disjoint_from: UBERON:0000990 ! reproductive system disjoint_from: UBERON:0001004 ! respiratory system disjoint_from: UBERON:0001007 ! digestive system disjoint_from: UBERON:0001008 ! excretory system disjoint_from: UBERON:0001009 ! circulatory system disjoint_from: UBERON:0001016 ! nervous system disjoint_from: UBERON:0001033 ! gustatory system disjoint_from: UBERON:0001434 ! skeletal system disjoint_from: UBERON:0002204 ! musculoskeletal system disjoint_from: UBERON:0002294 ! biliary system disjoint_from: UBERON:0002330 ! exocrine system disjoint_from: UBERON:0002390 ! hematopoietic system disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system [Term] id: UBERON:0000950 name: gracilis alt_id: UBERON:FBbt_00003277-FMA_43882-MA_0002311 def: "The most superficial muscle on the medial side of the thigh. It is thin and flattened, broad above, narrow and tapering below. It arises by a thin aponeurosis from the anterior margins of the lower half of the symphysis pubis and the upper half of the pubic arch." [Wikipedia:Gracilis_muscle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "gracilis muscle" EXACT [BTO:0000536] xref: BTO:0000536 xref: FMA:43882 xref: galen:Gracilis xref: MA:0002311 xref: ncithesaurus:Gracilis xref: OpenCyc:Mx4rv7If8pwpEbGdrcN5Y29ycA xref: SCTID:181689005 is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0003663 ! implied link automatically realized ! hindlimb muscle relationship: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0000951 name: rotator muscle alt_id: UBERON:FBbt_00003314-FMA_23081 comment: This class was created automatically from a combination of ontologies xref: FMA:23081 xref: SCTID:244872002 is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0000952 name: adductor muscle alt_id: UBERON:FBbt_00003317-FMA_74998 def: "Muscle that causes adduction can be called an adductor muscle. For example in biology, the muscle or muscles in the interior of a bivalve mollusk which serve to close the valves are called adductor muscles, and the large foot to shell muscle in gastropods such as the abalone and limpet is also known as an adductor muscle[WP]. A muscle that brings a body part closer to the sagittal plane of the body[ZFA, WikipediaLAdduction]." [Wikipedia:Adductor_muscle] comment: TODO - add functional xp definition. TODO - check MA. Note this is a structural relation in FMA subset: functional_classification subset: uberon_slim subset: vertebrate_core synonym: "adductor" RELATED [] synonym: "adductor group (leg)" EXACT [MA:0002267] xref: BTO:0000030 xref: FBbt:00003317 xref: FMA:74998 xref: MA:0002267 xref: SCTID:181670005 xref: ZFA:0005268 is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0000953 name: visceral muscle alt_id: UBERON:FBbt_00003525-MIAA_0000303-XAO_0000175 def: "involuntary non-striated muscle." [Wikipedia:Smooth_muscle] comment: terminological note: GO uses visceral and smooth interchangeably synonym: "adult visceral muscle" RELATED [] synonym: "smooth muscle" EXACT [] is_obsolete: true [Term] id: UBERON:0000954 name: intestine muscle alt_id: UBERON:FBbt_00003537-WBbt_0005796 def: "intestinal muscle cell, attach to intestine and body wall anterior to anus" [WB:Paper00000653] subset: uberon_slim synonym: "intestinal muscle" EXACT [] xref: BTO:0000643 xref: FBbt:00003537 xref: WBbt:0005796 is_obsolete: true [Term] id: UBERON:0000955 name: brain alt_id: UBERON:FBbt_00003624-FBbt_00005095-FMA_50801-MA_0000168-MIAA_0000098-MIAA_0000341-WBbt_0005440-XAO_0000010-ZFA_0000008 def: "The brain is the center of the nervous system in all vertebrate, and most invertebrate, animals.[1] Some primitive animals such as jellyfish and starfish have a decentralized nervous system without a brain, while sponges lack any nervous system at all. In vertebrates, the brain is located in the head, protected by the skull and close to the primary sensory apparatus of vision, hearing, balance, taste, and smell[WP]." [Wikipedia:Brain] comment: include synganglion? subset: major_organ subset: uberon_slim subset: vertebrate_core synonym: "encephalon" RELATED [BTO:0000142] synonym: "synganglion" RELATED [] xref: AAO:0010478 xref: ABA:Brain xref: BILA:0000135 xref: BTO:0000142 xref: EFO:0000302 xref: EHDAA:2641 xref: EHDAA:6485 xref: EHDAA2:0000183 xref: EMAPA:16894 xref: EV:0100164 xref: FBbt:00005095 xref: FMA:50801 xref: GAID:571 xref: galen:Brain xref: MA:0000168 xref: MAT:0000098 xref: MESH:A.08.186.211 xref: MIAA:0000098 xref: ncithesaurus:Brain xref: NIF_GrossAnatomy:birnlex_796 xref: OG:0000157 xref: OpenCyc:Mx4rvVjT65wpEbGdrcN5Y29ycA xref: SCTID:258335003 xref: TAO:0000008 xref: XAO:0000010 xref: ZFA:0000008 is_a: UBERON:0000062 {source="GO"} ! organ is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0000033 {source="FMA"} ! head relationship: part_of UBERON:0001017 {source="FMA"} ! central nervous system [Term] id: UBERON:0000956 name: cerebral cortex alt_id: UBERON:FBbt_00003625-FMA_61830-MA_0000185-MIAA_0000108 def: "The cerebral cortex is a structure within the brain that plays a key role in memory, attention, perceptual awareness, thought, language, and consciousness. It constitutes the outermost layer of the cerebrum. In preserved brains, it has a grey color, hence the name 'grey matter'. Grey matter is formed by neurons and their unmyelinated fibers, whereas the white matter below the grey matter of the cortex is formed predominantly by myelinated axons interconnecting different regions of the central nervous system. The human cerebral cortex is 2–4 mm (0.08–0.16 inches) thick. The surface of the cerebral cortex is folded in large mammals, such that more than two-thirds of the cortical surface is buried in the grooves, called 'sulci. ' The phylogenetically most recent part of the cerebral cortex, the neocortex, also called isocortex, is differentiated into six horizontal layers; the more ancient part of the cerebral cortex, the hippocampus (also called archicortex), has at most three cellular layers, and is divided into subfields. Relative variations in thickness or cell type (among other parameters) allow us to distinguish between different neocortical architectonic fields. The geometry of at least some of these fields seems to be related to the anatomy of the cortical folds, and, for example, layers in the upper part of the cortical ridges seem to be more clearly differentiated than in its deeper parts. [WP,unvetted]." [Wikipedia:Cerebral_cortex] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "brain cortex" RELATED [BTO:0000233] synonym: "cortex of cerebral hemisphere" EXACT [] synonym: "pallium of the brain" RELATED [BTO:0000233] xref: ABA:CTX xref: BM:Tel-Cx xref: BTO:0000233 xref: EFO:0000328 xref: EHDAA:5464 xref: EHDAA2:0000234 xref: EMAPA:17544 xref: EV:0100166 xref: FMA:61830 xref: GAID:629 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7b/Cerebral_Cortex_location.jpg/200px-Cerebral_Cortex_location.jpg xref: MA:0000185 xref: MAT:0000108 xref: MESH:A.08.186.211.730.885.213 xref: MIAA:0000108 xref: ncithesaurus:Cortex xref: NIF_GrossAnatomy:birnlex_1494 xref: OG:0000722 xref: SCTID:362880003 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0000203 {source="GO"} ! pallium relationship: part_of UBERON:0001869 ! cerebral hemisphere [Term] id: UBERON:0000957 name: lamina alt_id: UBERON:FBbt_00003708-FMA_67265 def: "Any thin layer or plate." [Wikipedia:Lamina] comment: TODO - merge with cell layer? subset: uberon_slim is_a: UBERON:0000479 ! tissue [Term] id: UBERON:0000958 name: medulla alt_id: UBERON:FBbt_00003748-FMA_61108 def: "Middle part of an organ (as opposed to the cortex)[WP]." [Wikipedia:Medulla] comment: This class is used in a very general sense subset: uberon_slim xref: BM:Me xref: FMA:61108 xref: galen:Medulla is_a: UBERON:0000471 ! compound organ component relationship: surrounded_by UBERON:0001851 ! cortex [Term] id: UBERON:0000959 name: optic chiasma alt_id: UBERON:FBbt_00003921-FMA_62045-MA_0001098-ZFA_0000556 def: "Nerve trunk which is continuous with right and left optic nerves and right and left optic tracts.[FMA]" [FMA:FMA, Wikipedia:Optic_chiasma, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "chiasma opticum" EXACT [FMA:62045, FMA:TA] synonym: "decussation of optic nerve fibers" EXACT [] synonym: "optic chiasm" EXACT [] xref: AAO:0010622 xref: BM:Tel-OCX xref: EHDAA:10227 xref: EHDAA2:0001302 xref: EMAPA:17603 xref: FMA:62045 xref: GAID:832 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b3/1543%2CVisalius%27OpticChiasma.jpg/200px-1543%2CVisalius%27OpticChiasma.jpg xref: MA:0001098 xref: MESH:A.08.800.800.120.680.600 xref: NIF_GrossAnatomy:birnlex_1416 xref: OG:0000190 xref: SCTID:244453006 xref: TAO:0000556 xref: XAO:0004071 xref: ZFA:0000556 is_a: UBERON:0002464 ! nerve trunk relationship: continuous_with UBERON:0000941 ! cranial nerve II relationship: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0000960 name: pharyngeal nerve alt_id: UBERON:FBbt_00004021-FMA_77524-WBbt_0005441 def: "The pharyngeal nerve (pterygopalatine nerve) is a small branch arising from the posterior part of the pterygopalatine ganglion. It passes through the pharyngeal canal with the pharyngeal branch of the maxillary artery, and is distributed to the mucous membrane of the nasal part of the pharynx, behind the auditory tube. [WP,unvetted]." [Wikipedia:Pharyngeal_nerve] subset: uberon_slim xref: FBbt:00004021 xref: FMA:77524 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d7/Gray780.png/200px-Gray780.png xref: WBbt:0005441 is_obsolete: true [Term] id: UBERON:0000961 name: thoracic ganglion alt_id: UBERON:FBbt_00004052-FMA_6471-MA_0001159 def: "The thoracic ganglia are paravertebral ganglia. The thoracic portion of the sympathetic trunk typically has 12 thoracic ganglia. Emerging from the ganglia are thoracic splancic nerves (the cardiopulmonary, the greater, lesser, and least splanchic nerves) that help provide sympathetic innervation to abdominal structures. Also, the ganglia of the thoracic sympathetic trunk have both white and gray rami communicantes. The white rami carry sympathetic fibers arising in the spinal cord into the sympathetic trunk. [WP,unvetted]." [Wikipedia:Thoracic_ganglion] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "ganglion of thorax" EXACT [OBOL:automatic] synonym: "ganglion thoracicum splanchnicum" EXACT [FMA:6471, FMA:TA] synonym: "thoracic paravertebral ganglion" EXACT [] synonym: "thoracic splanchnic ganglion" EXACT [] synonym: "thoracic sympathetic ganglion" EXACT [] synonym: "thorax ganglion" EXACT [OBOL:automatic] xref: BTO:0001831 xref: EHDAA:4664 xref: EHDAA2:0002012 xref: EMAPA:17158 xref: FMA:6471 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3e/Gray849.png/200px-Gray849.png xref: MA:0001159 xref: ncithesaurus:Thoracic_Ganglion xref: OG:0000515 xref: SCTID:181102004 is_a: UBERON:0001807 ! paravertebral ganglion [Term] id: UBERON:0000962 name: cervical nerve alt_id: UBERON:FBbt_00004053-FMA_5859 def: "The cervical nerves are the spinal nerves from the cervical vertebrae. Although there are seven cervical vertebrae (C1-C7), there are eight cervical nerves (C1-C8). All nerves except C8 emerge above their corresponding vertebrae, while the C8 nerve emerges below the C7 vertebra. (In the other portions of the spine, the nerve emerges below the vertebra with the same name. ) Dorsal (posterior) distribution includes the greater occipital (C2) and third occipital (C3). Ventral (anterior) distribution includes the cervical plexus (C1-C4) and brachial plexus (C5-C8) [WP,unvetted]." [Wikipedia:Cervical_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "cervical nerve tree" EXACT [] synonym: "cervical spinal nerve" EXACT [] xref: FMA:5859 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Gray795.png/200px-Gray795.png xref: ncithesaurus:Cervical_Nerve xref: NIF_GrossAnatomy:nlx_anat_20090207 xref: SCTID:360497008 is_a: UBERON:0001780 ! spinal nerve is_a: UBERON:0003439 ! implied link automatically realized ! trunk nerve relationship: part_of UBERON:0000961 ! thoracic ganglion [Term] id: UBERON:0000963 name: head sensillum alt_id: UBERON:FBbt_00004114-MIAA_0000204 comment: This class was created automatically from a combination of ontologies xref: FBbt:00004114 xref: MAT:0000204 xref: MIAA:0000204 is_a: UBERON:0002536 ! arthropod sensillum [Term] id: UBERON:0000964 name: cornea alt_id: UBERON:FBbt_00004191-FMA_58238-MA_0000266-XAO_0000180-ZFA_0000640 def: "transparent front part of the eye that covers the iris, pupil, and anterior chamber. Together with the lens, the cornea refracts light, accounting for approximately two-thirds of the eye's total optical power." [Wikipedia:Cornea] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "tunica cornea" RELATED [] xref: AAO:0010344 xref: BTO:0000286 xref: EFO:0000377 xref: EHDAA:10199 xref: EHDAA2:0000316 xref: EMAPA:17161 xref: EV:0100341 xref: FMA:58238 xref: GAID:892 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Schematic_diagram_of_the_human_eye_en.svg/200px-Schematic_diagram_of_the_human_eye_en.svg.png xref: MA:0000266 xref: MESH:A.09.371.060.217 xref: ncithesaurus:Cornea xref: OG:0000164 xref: OpenCyc:Mx4rvViBa5wpEbGdrcN5Y29ycA xref: SCTID:181162001 xref: TAO:0000640 xref: XAO:0000180 xref: ZFA:0000640 is_a: UBERON:0003102 ! surface structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: continuous_with UBERON:0001773 ! sclera relationship: develops_from UBERON:0005427 ! corneal primordium relationship: induced_by UBERON:0005426 ! lens vesicle relationship: part_of UBERON:0000019 ! camera-type eye relationship: part_of UBERON:0001801 ! anterior segment of eyeball [Term] id: UBERON:0000965 name: lens alt_id: UBERON:FBbt_00004199-FMA_58241-MA_0000275-MIAA_0000141-XAO_0000008-ZFA_0000035 def: "Transparent part of eye that helps to refract light to be focused on the retina." [Wikipedia:Lens_(anatomy)] comment: This class excludes compound eye corneal lenses. The naming may be too vertebrate-centric, in which case it could be renamed to camera-eye lens subset: uberon_slim subset: vertebrate_core synonym: "camera-type eye lens" EXACT [GO:0002088] synonym: "crystalline lens" RELATED [BTO:0000723] synonym: "eye lens" EXACT [] synonym: "lens crystallina" EXACT [Wikipedia:Lens_%28anatomy%29] synonym: "ocular lens" RELATED [BTO:0000723] xref: AAO:0010348 xref: BTO:0000723 xref: EHDAA:9057 xref: EHDAA2:0000975 xref: EMAPA:17838 xref: EV:0100343 xref: FMA:58241 xref: MA:0000275 xref: MAT:0000141 xref: MESH:A.09.371.509 xref: MIAA:0000141 xref: ncithesaurus:Crystalline_Lens xref: OG:0000169 xref: OpenCyc:Mx4rvVj0fZwpEbGdrcN5Y29ycA xref: SCTID:181169005 xref: TAO:0000035 xref: XAO:0000008 xref: ZFA:0000035 is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0005389 ! transparent eye structure relationship: develops_from UBERON:0003073 ! lens placode relationship: develops_from UBERON:0005426 ! lens vesicle relationship: induced_by UBERON:0003902 ! retinal neural layer relationship: part_of UBERON:0001801 ! anterior segment of eyeball [Term] id: UBERON:0000966 name: retina alt_id: UBERON:FBbt_00004200-FMA_58301-MA_0000276-MIAA_0000142-XAO_0000009-ZFA_0000152 def: "The retina is the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates." [Wikipedia:Retina, ZFIN:curator] comment: Currently this class encompasses only verteberate AOs but could in theory also include cephalopod - we may want to make a more specific class for vertebrate retina. note that this class excludes ommatidial retinas, as the retina must be part of an eyeball. Us the parent class photoreceptor array / light-sensitive tissue for arthropods subset: uberon_slim subset: vertebrate_core synonym: "inner layer of eyeball" EXACT [] synonym: "Netzhaut" RELATED [BTO:0001175] synonym: "tunica interna of eyeball" EXACT [] xref: AAO:0010352 xref: BTO:0001175 xref: EFO:0000832 xref: EHDAA:4757 xref: EHDAA2:0001627 xref: EMAPA:17168 xref: EV:0100348 xref: FMA:58301 xref: GAID:755 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ed/Human_eye_cross-sectional_view_grayscale.png/200px-Human_eye_cross-sectional_view_grayscale.png xref: MA:0000276 xref: MAT:0000142 xref: MESH:A.09.371.729 xref: MIAA:0000142 xref: ncithesaurus:Retina xref: NIF_GrossAnatomy:birnlex_1153 xref: NIF_GrossAnatomy:birnlex_1156 xref: OG:0000229 xref: OpenCyc:Mx4rvViTfpwpEbGdrcN5Y29ycA xref: SCTID:181171005 xref: TAO:0000152 xref: XAO:0000009 xref: ZFA:0000152 is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0005388 ! photoreceptor array relationship: develops_from UBERON:0003072 ! optic cup relationship: part_of UBERON:0001802 ! posterior segment of eyeball relationship: part_of UBERON:0005743 ! central nervous system plus retina [Term] id: UBERON:0000967 name: adult thoracic sensillum alt_id: UBERON:FBbt_00004245-MIAA_0000205 def: "An arthropod sensillum that is part of a thorax [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "arthropod sensillum of thorax" EXACT [OBOL:automatic] synonym: "sensillum of thorax" EXACT [OBOL:automatic] synonym: "thoracic sensillum" EXACT [] synonym: "thorax arthropod sensillum" EXACT [OBOL:automatic] synonym: "thorax sensillum" EXACT [OBOL:automatic] xref: FBbt:00004245 xref: MAT:0000205 xref: MIAA:0000205 is_a: UBERON:0002536 ! arthropod sensillum is_a: UBERON:0005181 ! implied link automatically realized ! thoracic segment organ relationship: part_of UBERON:0000915 intersection_of: UBERON:0002536 ! arthropod sensillum intersection_of: part_of UBERON:0000915 ! thoracic segment of trunk [Term] id: UBERON:0000968 name: adult abdominal sensillum alt_id: UBERON:FBbt_00004461-MIAA_0000206 comment: This class was created automatically from a combination of ontologies synonym: "abdomen arthropod sensillum" EXACT [OBOL:automatic] synonym: "abdomen sensillum" EXACT [OBOL:automatic] synonym: "abdominal sensillum" EXACT [] synonym: "arthropod sensillum of abdomen" EXACT [OBOL:automatic] synonym: "sensillum of abdomen" EXACT [OBOL:automatic] xref: FBbt:00004461 xref: MAT:0000206 xref: MIAA:0000206 is_a: UBERON:0002536 ! arthropod sensillum [Term] id: UBERON:0000969 name: joint connecting hardened body parts alt_id: UBERON:FBbt_00004479-FMA_7493-MA_0001475 xref: HAO:0000982 xref: OpenCyc:Mx4rwP1TTZwpEbGdrcN5Y29ycA is_a: UBERON:0004905 ! joint [Term] id: UBERON:0000970 name: eye alt_id: UBERON:FBbt_00004508-FMA_54448-MA_0000261-MIAA_0000140-XAO_0000179-ZFA_0000107 def: "organ that detects light" [http://en.wikipedia.org/wiki/Eye, UBERON:cjm, Wikipedia:Eye] subset: functional_classification subset: major_organ subset: organ_slim subset: uberon_slim synonym: "visual apparatus" RELATED [EV:0100336] xref: AAO:0010340 xref: BILA:0000017 xref: BTO:0000439 xref: EFO:0000827 xref: EMAPA:16198 xref: EV:0100336 xref: GAID:69 xref: MAT:0000140 xref: MESH:A.01.456.505.420 xref: MIAA:0000140 xref: OG:0000275 xref: OpenCyc:Mx4rvViTvpwpEbGdrcN5Y29ycA xref: SCTID:244486005 xref: TGMA:0000024 is_a: UBERON:0000020 ! sense organ relationship: part_of UBERON:0002104 ! visual system [Term] id: UBERON:0000971 name: ommatidium alt_id: UBERON:FBbt_00004510-MIAA_0000143 def: "One of the small facets of the compound eye." [ISBN:3110148986, Wikipedia:Ommatidium] subset: uberon_slim synonym: "omatidium" EXACT [] xref: BTO:0001922 xref: FBbt:00004510 xref: HAO:0000666 xref: MAT:0000143 xref: MIAA:0000143 is_a: UBERON:0002536 ! arthropod sensillum relationship: part_of UBERON:0000018 ! compound eye [Term] id: UBERON:0000972 name: antenna alt_id: UBERON:FBbt_00004511-MIAA_0000086 def: "The paired, usually multiple jointed, sensory organs articulating on the procephalic region of the head capsule; its highly versatile sensory structures are capable to detect the various environmental stimuli. In the context of Drosophila refers to they are the most anterior segmented sensory appendage of the head." [FB:gg, ISBN:3110148986, Wikipedia:Antenna_(biology)] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "feeler" RELATED [BTO:0000074] xref: AEO:0000198 xref: BTO:0000074 xref: EFO:0000874 xref: FBbt:00004511 xref: HAO:0000101 xref: MAT:0000086 xref: MIAA:0000086 xref: OpenCyc:Mx4rvVjSAZwpEbGdrcN5Y29ycA xref: TGMA:0000007 is_a: UBERON:0000026 ! appendage relationship: part_of UBERON:0000033 ! head [Term] id: UBERON:0000973 name: labrum alt_id: UBERON:FBbt_00004522-FMA_76808 is_obsolete: true [Term] id: UBERON:0000974 name: neck alt_id: UBERON:FBbt_00004550-FMA_7155-MA_0000024-MIAA_0000297 def: "Subdivision of body proper, which consists of a maximal set of diverse subclasses of organ and organ part spatially associated with the cervical vertebral coumn, it is partially surrounded by skin of neck. Examples: There is only one neck[FMA]." [Wikipedia:Neck] comment: TODO - generic definition subset: uberon_slim xref: AEO:0000108 xref: BTO:0000420 xref: EFO:0000967 xref: EHDAA2:0003108 xref: FMA:7155 xref: GAID:86 xref: galen:Neck xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/99/Female_neck.jpg/200px-Female_neck.jpg xref: MA:0000024 xref: MAT:0000297 xref: MESH:A.01.598 xref: MIAA:0000297 xref: ncithesaurus:Neck xref: OpenCyc:Mx4rvVjLF5wpEbGdrcN5Y29ycA xref: SCTID:302550007 is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0000153 ! anterior region of body [Term] id: UBERON:0000975 name: sternum alt_id: UBERON:FBbt_00004557-FMA_7485-MA_0001331 def: "The sternum or breastbone, in vertebrate anatomy, is a flat bone. It probably first evolved in early tetrapods as an extension of the pectoral girdle; it is not found in fish. In amphibians and reptiles it is typically a shield-shaped structure, often composed entirely of cartilage. It is absent in both turtles and snakes. In birds it is a relatively large bone and typically bears an enormous projecting keel to which the flight muscles are attached. Only in mammals does the sternum take on the elongated, segmented form seen in humans. In some mammals, such as opossums, the individual segments never fuse and remain separated by cartilagenous plates throughout life." [ISBN:3110148986, Wikipedia:Sternum] comment: Editor note: in EMAPA this is part of the skeleton of pectoral girdle. Here we have a strict spatial disjointness condition between the thorax and appendages so we do not include this subset: uberon_slim synonym: "breastbone" RELATED [BTO:0001302] synonym: "vertebrate sternum" EXACT [] xref: AAO:0000765 xref: BTO:0001302 xref: EHDAA:9561 xref: EHDAA2:0001914 xref: EMAPA:18344 xref: FMA:7485 xref: GAID:246 xref: galen:Sternum xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/12/Illu_thoracic_cage.jpg/200px-Illu_thoracic_cage.jpg xref: MA:0001331 xref: MESH:A.02.835.232.904.766 xref: ncithesaurus:Sternum xref: OG:0000856 xref: OpenCyc:Mx4rvVjO6JwpEbGdrcN5Y29ycA xref: SCTID:302522007 is_a: UBERON:0001474 ! bone is_a: UBERON:0003827 ! implied link automatically realized ! thoracic segment bone relationship: part_of UBERON:0000915 ! thoracic segment of trunk [Term] id: UBERON:0000976 name: humerus alt_id: UBERON:FBbt_00004562-FMA_13303-MA_0001356 def: "Paired long bones of endochondral origin that extend from the pectoral girdle to the elbows[AAO, modified]." [AAO:0000679, Wikipedia:Humerus] comment: homologous to proximal metapterygial mesomere [Hall 2007] subset: uberon_slim xref: AAO:0000679 xref: EFO:0001398 xref: EMAPA:18468 xref: EMAPA:19106 xref: FMA:13303 xref: GAID:183 xref: galen:Humerus xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/67/Illu_upper_extremity.jpg/200px-Illu_upper_extremity.jpg xref: MA:0001356 xref: MESH:A.02.835.232.087.412 xref: ncithesaurus:Humerus xref: OG:0001158 xref: SCTID:181923006 xref: XAO:0003210 is_a: UBERON:0002495 ! long bone is_a: UBERON:0003607 ! implied link automatically realized ! forelimb long bone is_a: UBERON:0004250 ! implied link automatically realized ! upper arm bone relationship: part_of UBERON:0001440 ! forelimb skeleton relationship: part_of UBERON:0003822 ! forelimb stylopod [Term] id: UBERON:0000977 name: pleura alt_id: UBERON:FBbt_00004591-FMA_9583-MA_0000433 def: "The delicate serous membrane that lines each half of the thorax of mammals and is folded back over the surface of the lung of the same side[BTO]." [Wikipedia:Pleura] comment: In mouse, is_a cavity lining. In FMA, is_a (viscous) serous membrane subset: uberon_slim synonym: "pleura" RELATED [] synonym: "pleural tissue" RELATED [BTO:0001791] synonym: "wall of pleural sac" EXACT [] xref: BTO:0001791 xref: EFO:0001980 xref: EV:0100044 xref: FMA:9583 xref: GAID:360 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ab/Gray965.png/200px-Gray965.png xref: MA:0000433 xref: MESH:A.04.716 xref: ncithesaurus:Pleural_Tissue xref: OG:0000394 xref: OpenCyc:Mx4rv3zwLZwpEbGdrcN5Y29ycA xref: SCTID:181609007 is_a: UBERON:0000042 {source="MESH"} ! serous membrane is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0009778 intersection_of: UBERON:0000042 ! serous membrane intersection_of: part_of UBERON:0009778 ! pleural sac relationship: part_of UBERON:0001004 ! respiratory system relationship: part_of UBERON:0009778 {source="FMA"} ! pleural sac relationship: surrounds UBERON:0002402 ! pleural cavity [Term] id: UBERON:0000978 name: leg alt_id: UBERON:FBbt_00004640-FMA_24979-MA_0000047-MIAA_0000095 def: "The portion of the hindlimb that contains both the stylopod and zeugopod." [Wikipedia:Leg#Limb] comment: The term leg can mean: [1] an appendage on which an animal walks [2] the entire hindlimb of a tetrapod [3] the segment of a human leg between knee and ankle (cf FMA) [4] the region of a hindlimb include the stylopod and zeugopod, but excluding the autopod. We define this class as [4], and thus 'leg' is compltely analagous to 'arm'. For [1], see the class 'locomotive weight-bearing appendage'. For [2] we use 'hindlimb'. For [3] we use the less open to misinterpretation 'hindlimb zeugopod'. Editor note: currently declared as overlapping foot, as AOs disagree over whether some ankle parts are in the leg or foot subset: uberon_slim synonym: "lower extremity" RELATED [MESH:A.01.378.610] synonym: "tetrapod leg" EXACT [] xref: BTO:0000721 xref: EFO:0001411 xref: EHDAA:5151 xref: EHDAA:6176 xref: EHDAA:8289 xref: EHDAA2:0000972 xref: EMAPA:17489 xref: GAID:49 xref: MA:0000047 xref: MESH:A.01.378.610 xref: OG:0000345 xref: OpenCyc:Mx4rvViYzZwpEbGdrcN5Y29ycA is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0006058 ! multi-limb segment region relationship: overlaps UBERON:0002387 ! foot relationship: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0000979 name: tibia alt_id: UBERON:FBbt_00004642-FMA_24476-MA_0001361 def: "Larger and stronger of the two bones in the leg below the knee in vertebrates and connects the knee with the ankle bones." [Wikipedia:Tibia] comment: Does not include the tibia segment of the arthropod leg FBbt:00004642 subset: uberon_slim synonym: "shankbone" EXACT [Wikipedia:Tibia] synonym: "shinbone" EXACT [Wikipedia:Tibia] xref: AAO:0000890 xref: BTO:0001252 xref: EFO:0003054 xref: EMAPA:18513 xref: EMAPA:19142 xref: FMA:24476 xref: GAID:204 xref: galen:Tibia xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2a/Gray260.png/200px-Gray260.png xref: MA:0001361 xref: MESH:A.02.835.232.500.883 xref: ncithesaurus:Tibia xref: OpenCyc:Mx4rvtq3-ZwpEbGdrcN5Y29ycA xref: SCTID:182061009 is_a: UBERON:0002495 {source="FMA"} ! long bone is_a: UBERON:0003608 ! implied link automatically realized ! hindlimb long bone is_a: UBERON:0004251 ! implied link automatically realized ! lower leg bone relationship: part_of UBERON:0001441 ! hindlimb skeleton relationship: part_of UBERON:0003823 {source="FMA"} ! hindlimb zeugopod [Term] id: UBERON:0000980 name: trochanter alt_id: UBERON:FBbt_00004643-FMA_82513 def: "bony prominences near the upper extremity of the femur; there are two in human (greater and lesser trochanters) and three in many other mammalian species (greater, lesser and third); these normally serve as attachment points for hip and thigh muscles[MP]" [Wikipedia:Trochanter] subset: uberon_slim synonym: "femoral trochanter" EXACT [AAO:0000897] xref: AAO:0000897 xref: FMA:82513 xref: MA:0002821 xref: ncithesaurus:Trochanter is_a: UBERON:0005055 ! implied link automatically realized ! zone of long bone is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ relationship: part_of UBERON:0000981 {source="MA"} ! femur [Term] id: UBERON:0000981 name: femur alt_id: UBERON:FBbt_00004644-FMA_9611-MA_0001359 def: "The femur, or thigh bone, is the most proximal (closest to the body) bone of the leg in vertebrates capable of walking or jumping, such as most land mammals, birds, many reptiles such as lizards, and amphibians such as frogs. In vertebrates with four legs, the femur is found only in the rear legs. Some species of whales[1], snakes[2], and other non-walking vertebrates have vestigial femurs. One of the earliest known vertebrates to have a femur is the Eusthenopteron, a prehistoric lobe-finned fish from the Late Devonian period." [Wikipedia:Femur] comment: homologous to proximal metapterygial mesomere [Hall 2007] subset: uberon_slim synonym: "femoral bone" RELATED [BTO:0001284] synonym: "os femorale" RELATED [BTO:0001284] synonym: "os femoris" RELATED [BTO:0001284] synonym: "thigh bone" EXACT [] xref: AAO:0000889 xref: BTO:0001284 xref: EFO:0001396 xref: EMAPA:18514 xref: EMAPA:19143 xref: FMA:9611 xref: GAID:199 xref: galen:Femur xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/73/Gray252.png/200px-Gray252.png xref: MA:0001359 xref: MESH:A.02.835.232.500.247 xref: ncithesaurus:Femur xref: OG:0001159 xref: OpenCyc:Mx4rvVjOJJwpEbGdrcN5Y29ycA xref: SCTID:182046008 xref: XAO:0003214 is_a: UBERON:0002495 ! long bone is_a: UBERON:0003608 ! implied link automatically realized ! hindlimb long bone is_a: UBERON:0003826 ! implied link automatically realized ! upper leg bone is_a: UBERON:0008202 {source="MA"} ! bone of hip region relationship: part_of UBERON:0000376 ! hindlimb stylopod [Term] id: UBERON:0000982 name: skeletal joint alt_id: UBERON:FBbt_00004645-FMA_228659-FMA_7490-MA_0000319-MIAA_0000188-XAO_0000171-ZFA_0001596 def: "Heterogeneous cluster which consists of two or more adjacent bones or cartilages, parts of which are interconnected by organ parts that consist of various types of connective tissue. Together with other joints and bones, a joint constitutes the skeletal system. Examples: pubic symphysis, knee joint, temporomandibular joint." [FMA:7490, Wikipedia:Joint, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: organ_slim subset: uberon_slim subset: vertebrate_core synonym: "articular joint" RELATED [BTO:0001686] synonym: "joint" BROAD [FMA:7490] xref: AEO:0000182 xref: BTO:0001686 xref: EFO:0000948 xref: EHDAA2:0003182 xref: EMAPA:19204 xref: FMA:7490 xref: GAID:102 xref: galen:Joint xref: MA:0000319 xref: MAT:0000188 xref: MESH:A.02.835.583 xref: MIAA:0000188 xref: ncithesaurus:Joint xref: OG:0001276 xref: OpenCyc:Mx4rvVjjdpwpEbGdrcN5Y29ycA xref: TAO:0000367 xref: XAO:0000171 xref: ZFA:0001596 is_a: UBERON:0004765 ! skeletal element is_a: UBERON:0004905 ! joint relationship: part_of UBERON:0004770 ! articular system [Term] id: UBERON:0000983 name: metatarsus alt_id: UBERON:FBbt_00004648-FMA_24997-MA_0000049 def: "Limb segment that consists of the long bones of the foot. The metatarsals are analogous to the metacarpal bones of the hand." [Wikipedia:Metatarsus] comment: Note that mammalian and non-mammalian AOs differ in whether they consider this a part of the skeleton subset: uberon_slim synonym: "hind metapodium" EXACT [AAO:0000221, http://en.wiktionary.org/wiki/metapodial, MA:th] synonym: "metatarsal part of foot" EXACT [] synonym: "metatarsal region" EXACT [] synonym: "regio metatarsalis" EXACT [FMA:24997, FMA:TA] xref: AAO:0000221 xref: FMA:24997 xref: GAID:43 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Gray291.png/200px-Gray291.png xref: MA:0000049 xref: MESH:A.01.378.610.250.300.480 xref: OpenCyc:Mx4rva_rBJwpEbGdrcN5Y29ycA xref: SCTID:280711000 xref: XAO:0003212 is_a: UBERON:0008784 ! implied link automatically realized ! lower limb segment is_a: UBERON:0009877 ! implied link automatically realized ! metapodium relationship: part_of UBERON:0002387 intersection_of: UBERON:0009877 ! metapodium intersection_of: part_of UBERON:0002387 ! foot [Term] id: UBERON:0000984 name: imaginal disc-derived wing alt_id: UBERON:FBbt_00004729-MIAA_0000202 def: "A flight organ of the adult external thorax that is derived from a dorsal mesothoracic disc." [FB:gg] comment: TODO: review. hymenoptera thorax = fusion of thorax and mesosoma/metasoma subset: uberon_slim synonym: "adult mesothoracic wing" RELATED [] synonym: "adult metathoracic wing" RELATED [] synonym: "thoracic wing" RELATED [] synonym: "thorax wing" RELATED [OBOL:automatic] synonym: "wing" BROAD SENSU [FBbt:00004729] synonym: "wing of thorax" RELATED [OBOL:automatic] xref: FBbt:00004729 xref: HAO:0001089 xref: TGMA:0000196 is_a: UBERON:0000023 ! wing relationship: develops_from UBERON:0000939 intersection_of: UBERON:0000023 ! wing intersection_of: develops_from UBERON:0000939 ! imaginal disc [Term] id: UBERON:0000985 name: axillary vein alt_id: UBERON:FBbt_00004754-FMA_13329-MA_0002084 def: "In human anatomy, the axillary vein is a large blood vessel that conveys blood from the lateral aspect of the thorax, axilla (armpit) and upper limb toward the heart. There is one axillary vein on each side of the body. Its origin is at the lower margin of the teres major muscle and a continuation of the brachial vein. Its tributaries include the basilic vein and cephalic vein, which are both superficial veins. It terminates at the lateral margin of the first rib, at which it becomes the subclavian vein. It is accompanied along its course by a similarly named artery, the axillary artery. [WP,unvetted]." [Wikipedia:Axillary_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "subcostal vein" RELATED [] xref: EMAPA:18758 xref: FMA:13329 xref: GAID:527 xref: galen:AxillaryVein xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e9/Gray576.png/200px-Gray576.png xref: MA:0002084 xref: MESH:A.07.231.908.077 xref: ncithesaurus:Axillary_Vein xref: OpenCyc:Mx4rwLSHK5wpEbGdrcN5Y29ycA xref: SCTID:181389002 is_a: UBERON:0001638 ! vein is_a: UBERON:0003233 ! implied link automatically realized ! epithelium of shoulder is_a: UBERON:0003515 ! implied link automatically realized ! forelimb blood vessel relationship: part_of UBERON:0001467 ! shoulder [Term] id: UBERON:0000987 name: haltere alt_id: UBERON:FBbt_00004783-MIAA_0000203 def: "The capitate stalk on both sides of the thorax having developed from the dorsal metathoracic wing-buds, it is freely movable and capable of vibration, representing the hind wing of Diptera; used for flight balance." [FB:gg, ISBN:3110148986, Wikipedia:Haltere] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "balancer organ" RELATED [] xref: EFO:0000886 xref: FBbt:00004783 xref: MAT:0000203 xref: MIAA:0000203 xref: OpenCyc:Mx4rwL1JcJwpEbGdrcN5Y29ycA is_a: UBERON:0000026 ! appendage relationship: develops_from UBERON:0000939 ! imaginal disc relationship: part_of UBERON:0000914 ! organismal segment [Term] id: UBERON:0000988 name: pons alt_id: UBERON:FBbt_00004840-FMA_67943-MA_0000204-MIAA_0000115-ZFA_0001618 def: "Brainstrem structure that has as its parts the pontine tegmentum and basal part of pons[FMA]." [FMA:67943, Wikipedia:Pons] comment: The pons is not present in zebrafish. In this ontology we currently have some structures which are applicable to zebrafish appearing as parts of the pons. Currently we only include the weaker dubious_for_taxon relationship ubtil this is resolved subset: uberon_slim synonym: "pons of Varolius" EXACT [] xref: ABA:P xref: BM:Pons xref: BTO:0001101 xref: EFO:0001394 xref: EMAPA:17563 xref: EV:0100253 xref: FMA:67943 xref: GAID:578 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/36/Gray768.png/200px-Gray768.png xref: MA:0000204 xref: MAT:0000115 xref: MESH:A.08.186.211.132.810.428.600 xref: MIAA:0000115 xref: NIF_GrossAnatomy:birnlex_733 xref: OG:0001176 xref: SCTID:279103004 is_a: UBERON:0002680 ! regional part of metencephalon relationship: part_of UBERON:0001895 ! metencephalon relationship: part_of UBERON:0002298 ! brainstem relationship: spatially_disjoint_from UBERON:0001896 {source="ABA"} ! medulla oblongata [Term] id: UBERON:0000989 name: penis alt_id: UBERON:FBbt_00004852-FMA_9707-MA_0000408-MIAA_0000186 def: "The penis (plural penises, penes) is an external sexual organ of certain biologically male organisms, in both vertebrates and invertebrates. The penis is a reproductive organ, technically an intromittent organ, and for placental mammals, additionally serves as the external organ of urination. The penis is generally found on mammals and reptiles. [WP,unvetted]." [Wikipedia:Penis] comment: Most male birds (e.g., roosters and turkeys) have a cloaca (also present on the female), but not a penis. Among bird species with a penis are paleognathes (tinamous and ratites), Anatidae (ducks, geese and swans), and a very few other species (such as flamingoes). A bird penis is different in structure from mammal penises, being an erectile expansion of the cloacal wall and being erected by lymph, not blood. It is usually partially feathered and in some species features spines and brush-like filaments, and in flaccid state curls up inside the cloaca[WP] subset: organ_slim subset: uberon_slim synonym: "phallus" RELATED [] xref: BTO:0000405 xref: EFO:0000987 xref: EHDAA:9380 xref: EHDAA2:0001433 xref: EMAPA:18682 xref: EV:0100107 xref: FMA:9707 xref: GAID:389 xref: galen:Penis xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/87/Labelled_flaccid_penis.jpg/200px-Labelled_flaccid_penis.jpg xref: MA:0000408 xref: MAT:0000186 xref: MESH:A.05.360.444.492 xref: MIAA:0000186 xref: ncithesaurus:Penis xref: OG:0000727 xref: OpenCyc:Mx4rvVjkCZwpEbGdrcN5Y29ycA xref: SCTID:265793009 is_a: UBERON:0008811 {source="Wikipedia"} ! intromittent organ relationship: develops_from UBERON:0004876 {source="Wikipedia"} ! urogenital ridge relationship: develops_from UBERON:0005876 ! genital tubercle [Term] id: UBERON:0000990 name: reproductive system alt_id: UBERON:FBbt_00004857-FMA_7160-MA_0000326-MIAA_0000305-WBbt_0005747-XAO_0000142-ZFA_0000632 def: "Anatomical system that has as its parts the organs concerned with reproduction." [Wikipedia:Reproductive_system] comment: This class was created automatically from a combination of ontologies subset: functional_classification subset: uberon_slim subset: vertebrate_core synonym: "animal reproductive system" RELATED [BTO:0000081] synonym: "genital system" RELATED [] synonym: "genitalia" RELATED PLURAL [] synonym: "Geschlechtsorgan" RELATED [BTO:0000081] synonym: "organa genitalia" RELATED [BTO:0000081] synonym: "reproductive tissue" RELATED [BTO:0000081] xref: AAO:0010258 xref: BILA:0000103 xref: BTO:0000081 xref: EFO:0000809 xref: EHDAA:5923 xref: EHDAA2:0001603 xref: EMAPA:17381 xref: EV:0100100 xref: FBbt:00004826 xref: FBbt:00004857 xref: FMA:7160 xref: GAID:363 xref: HAO:0000374 xref: HAO:0000895 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Penis.svg/200px-Penis.svg.png xref: MA:0000326 xref: MIAA:0000305 xref: ncithesaurus:Reproductive_System xref: OG:0000182 xref: OpenCyc:Mx4rvVja4ZwpEbGdrcN5Y29ycA xref: SCTID:278875001 xref: TAO:0000632 xref: WBbt:0005747 xref: XAO:0000142 xref: ZFA:0000632 is_a: UBERON:0000467 ! anatomical system is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure disjoint_from: UBERON:0000949 ! endocrine system disjoint_from: UBERON:0001004 ! respiratory system disjoint_from: UBERON:0001007 ! digestive system disjoint_from: UBERON:0001008 ! excretory system disjoint_from: UBERON:0001009 ! circulatory system disjoint_from: UBERON:0001016 ! nervous system disjoint_from: UBERON:0001033 ! gustatory system disjoint_from: UBERON:0001434 ! skeletal system disjoint_from: UBERON:0002204 ! musculoskeletal system disjoint_from: UBERON:0002294 ! biliary system disjoint_from: UBERON:0002330 ! exocrine system disjoint_from: UBERON:0002390 ! hematopoietic system disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system relationship: develops_from UBERON:0000926 ! mesoderm [Term] id: UBERON:0000991 name: gonad alt_id: UBERON:FBbt_00004858-FMA_18250-MA_0002420-WBbt_0005175-XAO_0003146-ZFA_0000413 def: "Reproductive organ that produces and releases eggs (ovary) or sperm (testis)." [ISBN:0140512888, Wikipedia:Gonad, ZFA:0000413, ZFIN:curator] comment: FMA xref is a 'general anatomical term' subset: major_organ subset: organ_slim subset: uberon_slim subset: vertebrate_core synonym: "gonada" EXACT [] xref: AAO:0000213 xref: BILA:0000123 xref: BTO:0000534 xref: EMAPA:17383 xref: FBbt:00004858 xref: FMA:18250 xref: GAID:368 xref: HAO:0000379 xref: MA:0002420 xref: MESH:A.05.360.576 xref: ncithesaurus:Gonad xref: OG:0000397 xref: OpenCyc:Mx4rwQvdiZwpEbGdrcN5Y29ycA xref: SCTID:304623008 xref: TAO:0000413 xref: WBbt:0005175 xref: XAO:0003146 xref: ZFA:0000413 is_a: UBERON:0003133 ! reproductive organ relationship: develops_from UBERON:0005564 ! gonad primordium relationship: part_of UBERON:0000990 ! reproductive system relationship: part_of UBERON:0002323 ! body cavity [Term] id: UBERON:0000992 name: female gonad alt_id: UBERON:FBbt_00004865-FMA_7209-MA_0000384-MIAA_0000125-XAO_0000258-ZFA_0000403 def: "Ovum-producing female reproductive organ." [Wikipedia:Ovary] comment: Ovaries of some kind are found in the female reproductive system of many animals that employ sexual reproduction, including invertebrates. However, they develop in a very different way in most invertebrates than they do in vertebrates, and are not truly homologous. Many of the features found in human ovaries are common to all vertebrates, including the presence of follicular cells, tunica albuginea, and so on. However, many species produce a far greater number of eggs during their lifetime than do humans, so that, in fish and amphibians, there may be hundreds, or even millions of fertile eggs present in the ovary at any given time. In these species, fresh eggs may be developing from the germinal epithelium throughout life. Corpora lutea are found only in mammals, and in some elasmobranch fish; in other species, the remnants of the follicle are quickly resorbed by the ovary. In birds, reptiles, and monotremes, the egg is relatively large, filling the follicle, and distorting the shape of the ovary at maturity. Amphibians and reptiles have no ovarian medulla; the central part of the ovary is a hollow, lymph-filled space. The ovary of teleosts is also often hollow, but in this case, the eggs are shed into the cavity, which opens into the oviduct. Although most normal female vertebrates have two ovaries, this is not the case in all species. In birds and platypuses, the right ovary never matures, so that only the left is functional. In some elasmobranchs, the reverse is true, with only the right ovary fully developing. In the primitive jawless fish, and some teleosts, there is only one ovary, formed by the fusion of the paired organs in the embryo[WP]. subset: organ_slim subset: uberon_slim subset: vertebrate_core synonym: "female organism genitalia gonad" EXACT [OBOL:automatic] synonym: "female organism genitalia gonada" EXACT [OBOL:automatic] synonym: "female organism reproductive system gonad" EXACT [OBOL:automatic] synonym: "female organism reproductive system gonada" EXACT [OBOL:automatic] synonym: "female reproductive system gonad" EXACT [OBOL:automatic] synonym: "female reproductive system gonada" EXACT [OBOL:automatic] synonym: "genitalia of female organism gonad" EXACT [OBOL:automatic] synonym: "genitalia of female organism gonada" EXACT [OBOL:automatic] synonym: "gonad of female organism genitalia" EXACT [OBOL:automatic] synonym: "gonad of female organism reproductive system" EXACT [OBOL:automatic] synonym: "gonad of female reproductive system" EXACT [OBOL:automatic] synonym: "gonad of genitalia of female organism" EXACT [OBOL:automatic] synonym: "gonad of reproductive system of female organism" EXACT [OBOL:automatic] synonym: "gonada of female organism genitalia" EXACT [OBOL:automatic] synonym: "gonada of female organism reproductive system" EXACT [OBOL:automatic] synonym: "gonada of female reproductive system" EXACT [OBOL:automatic] synonym: "gonada of genitalia of female organism" EXACT [OBOL:automatic] synonym: "gonada of reproductive system of female organism" EXACT [OBOL:automatic] synonym: "ovaries" RELATED PLURAL [] synonym: "ovary" EXACT [] synonym: "ovum-producing ovary" EXACT SENSU [GO:0061039] synonym: "reproductive system of female organism gonad" EXACT [OBOL:automatic] synonym: "reproductive system of female organism gonada" EXACT [OBOL:automatic] xref: AAO:0000371 xref: BILA:0000125 xref: BTO:0000975 xref: EHDAA:8124 xref: EHDAA2:0001360 xref: EMAPA:17962 xref: EV:0100111 xref: FBbt:00004865 xref: FMA:7209 xref: GAID:367 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Female_anatomy.png/200px-Female_anatomy.png xref: MA:0000384 xref: MESH:A.05.360.319.114.630 xref: MIAA:0000125 xref: ncithesaurus:Ovary xref: OG:0000251 xref: OpenCyc:Mx4rvVi9QJwpEbGdrcN5Y29ycA xref: SCTID:181464007 xref: TAO:0000403 xref: XAO:0000258 xref: ZFA:0000403 is_a: UBERON:0000991 ! implied link automatically realized ! gonad is_a: UBERON:0003134 ! implied link automatically realized ! female reproductive organ relationship: part_of UBERON:0000474 intersection_of: UBERON:0000991 ! gonad intersection_of: part_of UBERON:0000474 ! female reproductive system relationship: develops_from UBERON:0009117 ! indifferent gonad [Term] id: UBERON:0000993 name: oviduct alt_id: UBERON:FBbt_00004911-FMA_18245-MA_0000385-MIAA_0000126-XAO_0003052-ZFA_0000560 def: "passage from the ovaries to the outside of the body[Wikipedia:Oviduct]." [Wikipedia:Oviduct] comment: note that the more specific class fallopian tube is included, which has mammal-specific relationships subset: uberon_slim subset: vertebrate_core synonym: "salpinx" RELATED [BTO:0000980] synonym: "tuba uterina" RELATED [BTO:0000980] synonym: "tuba uterinae" RELATED [BTO:0000980] synonym: "uterine tube" RELATED [] xref: AAO:0010533 xref: BTO:0000980 xref: EFO:0000974 xref: EMAPA:18984 xref: GAID:366 xref: MAT:0000126 xref: MESH:A.13.706 xref: MIAA:0000126 xref: ncithesaurus:Oviduct xref: OG:0001136 xref: TAO:0000560 xref: XAO:0003052 xref: ZFA:0000560 is_a: UBERON:0000025 ! tube is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: continuous_with UBERON:0000992 ! female gonad relationship: part_of UBERON:0000474 ! female reproductive system [Term] id: UBERON:0000994 name: spermathecum alt_id: UBERON:FBbt_00004921-MIAA_0000168-WBbt_0005319 def: "an organ of the female reproductive tract in insects, some molluscs, oligochaeta worms and certain other invertebrates and vertebrates.[1] Its purpose is to receive and store sperm from the male, and can sometimes be the site of fertilization when the oocytes are ready.[2] Some species have multiple spermathecae, as seen in earthworms, where four pairs of spermathecae are present. One pair in 6,7,8 and 9 segments. They receive and store the spermatozoa of another earthworm during copulation.[3] They are lined with epithelium and are variable in shape; some are thin, heavily coiled tubes, others are vague outpocketings from the main reproductive tract. It is one of the many variations in sexual reproduction[WP]. an accordion-like tube that contains sperm and is the site of oocyte fertilization." [Wikipedia:Spermatheca] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "receptaculum seminis" RELATED [BTO:0001273] synonym: "seminal receptacle" RELATED [] synonym: "spermatheca" RELATED PLURAL [] xref: BTO:0001273 xref: EFO:0000977 xref: FBbt:00004921 xref: HAO:0000945 xref: MAT:0000168 xref: MIAA:0000168 xref: TGMA:0000560 xref: WBbt:0005319 is_a: UBERON:0000062 ! organ is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0000474 ! female reproductive system relationship: part_of UBERON:0000991 ! gonad [Term] id: UBERON:0000995 name: uterus alt_id: UBERON:FBbt_00004924-FMA_17558-MA_0000389-MIAA_0000127-WBbt_0006760 def: "a major female hormone-responsive reproductive sex organ of most mammals including humans. One end, the cervix, opens into the vagina, while the other is connected to one or both fallopian tubes, depending on the species. It is within the uterus that the fetus develops during gestation, usually developing completely in placental mammals such as humans and partially in marsupials such as kangaroos and opossums. Two uteruses usually form initially in a female fetus, and in placental mammals they may partially or completely fuse into a single uterus depending on the species. In many species with two uteruses, only one is functional. Humans and other higher primates such as chimpanzees, along with horses, usually have a single completely fused uterus, although in some individuals the uteruses may not have completely fused[WP]." [Wikipedia:Uterus] comment: Most animals that lay eggs, such as birds and reptiles, have an oviduct instead of a uterus. In monotremes, mammals which lay eggs and include the platypus, either the term uterus or oviduct is used to describe the same organ, but the egg does not develop a placenta within the mother and thus does not receive further nourishment after formation and fertilization. Marsupials have two uteruses, each of which connect to a lateral vagina and which both use a third, middle "vagina" which functions as the birth canal. Marsupial embryos form a choriovitelline "placenta" (which can be thought of as something between a monotreme egg and a "true" placenta), in which the egg's yolk sac supplies a large part of the embryo's nutrition but also attaches to the uterine wall and takes nutrients from the mother's bloodstream. subset: organ_slim subset: uberon_slim synonym: "uterine horn" RELATED [] synonym: "uterine horns" RELATED [] synonym: "womb" RELATED [BTO:0001424] xref: BTO:0001424 xref: EFO:0000975 xref: EMAPA:29915 xref: EV:0100113 xref: FMA:17558 xref: GAID:172 xref: galen:Uterus xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Female_anatomy.png/200px-Female_anatomy.png xref: MA:0000389 xref: MAT:0000127 xref: MESH:A.05.360.319.679 xref: MIAA:0000127 xref: ncithesaurus:Uterus xref: OG:0001137 xref: OpenCyc:Mx4rvViojJwpEbGdrcN5Y29ycA xref: SCTID:181452004 is_a: UBERON:0003975 ! implied link automatically realized ! internal female genitalia is_a: UBERON:0004175 ! internal reproductive organ relationship: develops_from UBERON:0005795 ! embryonic uterus relationship: part_of UBERON:0000474 ! female reproductive system [Term] id: UBERON:0000996 name: vagina alt_id: UBERON:FBbt_00004925-FMA_19949-MA_0000394-MIAA_0000128 def: "a fibromuscular tubular tract leading from the uterus to the exterior of the body in female placental mammals and marsupials, or to the cloaca in female birds, monotremes, and some reptiles[WP]. Organ with organ cavity which connects the cervical canal of uterus to the vestibule of vagina.[FMA]" [FMA:19949, Wikipedia:Vagina] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: BTO:0000243 xref: EFO:0000976 xref: EMAPA:18986 xref: EV:0100117 xref: FMA:19949 xref: GAID:381 xref: galen:Vagina xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a4/Vaginal_opening_-_english_description.jpg/200px-Vaginal_opening_-_english_description.jpg xref: MA:0000394 xref: MAT:0000128 xref: MESH:A.05.360.319.779 xref: MIAA:0000128 xref: ncithesaurus:Vagina xref: OG:0001138 xref: OpenCyc:Mx4rvVj1B5wpEbGdrcN5Y29ycA xref: SCTID:181441005 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003975 ! internal female genitalia relationship: develops_from UBERON:0000164 {source="Wikipedia"} ! primitive urogenital sinus relationship: part_of UBERON:0000474 ! female reproductive system [Term] id: UBERON:0000997 name: mammalian vulva alt_id: UBERON:FBbt_00004926-FMA_20462-FMA_225311-MA_0000395-MIAA_0000169-WBbt_0006748 def: "external genital organs of the female mammal[WP]." [Wikipedia:Vulva] comment: editor note: todo - add pudendum subset: uberon_slim synonym: "female pudendum" EXACT [FMA:20462] synonym: "female pudendum" EXACT [BTO:0003101] synonym: "mammalian vulva" EXACT [] synonym: "puboperineal region" EXACT [FMA:20462] synonym: "pudendum femininum" EXACT [FMA:20462, FMA:TA] synonym: "skin of female pudendum" EXACT [] synonym: "skin of vulva" EXACT [] synonym: "vulva" EXACT [MA:0000395] xref: BTO:0003101 xref: EFO:0000978 xref: EV:0100118 xref: FMA:20462 xref: GAID:383 xref: galen:Vulva xref: MA:0000395 xref: MAT:0000169 xref: MESH:A.05.360.319.887 xref: MIAA:0000169 xref: ncithesaurus:Vulva xref: OG:0001458 xref: OpenCyc:Mx4rvgAWeJwpEbGdrcN5Y29ycA xref: SCTID:265796001 is_a: UBERON:0005056 {source="BTO"} ! external female genitalia relationship: develops_from UBERON:0005876 {source="Wikipedia"} ! genital tubercle relationship: part_of UBERON:0000474 ! female reproductive system [Term] id: UBERON:0000998 name: seminal vesicle alt_id: UBERON:FBbt_00004958-FMA_19386-MA_0000410-MIAA_0000171-WBbt_0006870 def: "Either of a pair of glandular pouches that lie one on either side of the male reproductive tract and in the human male secrete a sugar- and protein-containing fluid into the ejaculatory duct." [BTO:0001234, Wikipedia:Seminal_vesicle] comment: The mesonephros persists and form the permanent kidneys in fishes and amphibians, but in reptiles, birds, and mammals, it atrophies and for the most part disappears rapidly as the permanent kidney (metanephros) begins to develop during the sixth or seventh week. By the beginning of the fifth month only the ducts and a few of the tubules of the mesonephros remain. subset: organ_slim subset: uberon_slim synonym: "glandula seminalis" RELATED [BTO:0001234] synonym: "glandula vesiculosa" RELATED [BTO:0001234] synonym: "gon_male_sves" RELATED [] synonym: "seminal gland" BROAD [] synonym: "vas efferens" RELATED [] synonym: "vesicul%c3%a6 seminales" RELATED [Wikipedia:Seminal_vesicle] synonym: "vesicula seminalis" RELATED [Wikipedia:Seminal_vesicle] synonym: "vesicula seminalis" RELATED [BTO:0001234] synonym: "vesiculae seminales" RELATED [Wikipedia:Seminal_vesicle] synonym: "vesicular gland" RELATED [Wikipedia:Seminal_vesicle] synonym: "vesicular glands" RELATED [Wikipedia:Seminal_vesicle] synonym: "vesicular seminalis" RELATED [Wikipedia:Seminal_vesicle] xref: AAO:0010788 xref: BTO:0001234 xref: EFO:0000986 xref: EMAPA:19180 xref: EV:0100106 xref: FMA:19386 xref: GAID:394 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d1/Male_anatomy_en.svg/200px-Male_anatomy_en.svg.png xref: MA:0000410 xref: MAT:0000171 xref: MESH:A.05.360.444.713 xref: MIAA:0000171 xref: ncithesaurus:Seminal_Vesicle xref: OG:0001379 xref: OpenCyc:Mx4rwTtRpJwpEbGdrcN5Y29ycA xref: SCTID:181434004 is_a: UBERON:0006868 ! seminal gland relationship: develops_from UBERON:0000080 ! mesonephros relationship: part_of UBERON:0000473 ! testis [Term] id: UBERON:0000999 name: ejaculatory duct alt_id: UBERON:FBbt_00004965-FMA_19325-MIAA_0000170 def: "The Ejaculatory ducts (ductus ejaculatorii) are paired structures in male anatomy, about 2 cm in length. Each ejaculatory duct is formed by the union of the vas deferens with the duct of the seminal vesicle. They pass through the prostate, and empty into the urethra at the Colliculus seminalis. During ejaculation, semen passes through the ducts and exits the body via the penis. Surgery to correct Benign Prostatic Hyperplasia (BPH) may destroy these ducts resulting in retrograde ejaculation. [WP,unvetted]." [Wikipedia:Ejaculatory_duct] comment: TODO: split off insect classes subset: uberon_slim synonym: "ductus ejaculatorius" RELATED [BTO:0001580] xref: BTO:0001580 xref: EFO:0000985 xref: EMAPA:19088 xref: FBbt:00004965 xref: FMA:19325 xref: GAID:388 xref: HAO:0000283 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/35/Male_anatomy.png/200px-Male_anatomy.png xref: MAT:0000170 xref: MESH:A.05.360.444.251 xref: MIAA:0000170 xref: ncithesaurus:Ejaculatory_Duct xref: OpenCyc:Mx4rwOt7MJwpEbGdrcN5Y29ycA xref: SCTID:279665005 xref: TADS:0000489 is_a: UBERON:0000058 ! duct is_a: UBERON:0005904 ! implied link automatically realized ! duct of male reproductive system relationship: part_of UBERON:0000079 ! male reproductive system [Term] id: UBERON:0001000 name: vas deferens alt_id: UBERON:FBbt_00004968-FMA_19234-MA_0000413-MIAA_0000129-WBbt_0005337 def: "duct that transports sperm. In mammals this is from the epididymis." [Wikipedia:Vas_deferens] comment: TODO: split off insect classes subset: uberon_slim subset: vertebrate_core synonym: "deferent duct" EXACT [] synonym: "ductus deferens" EXACT [Wikipedia:Vas_deferens] synonym: "sperm duct" EXACT [] synonym: "vas deferen" EXACT [] synonym: "vasa deferentia" RELATED [] xref: BTO:0001427 xref: EFO:0000981 xref: EMAPA:18681 xref: EV:0100105 xref: FBbt:00004968 xref: FMA:19234 xref: GAID:404 xref: galen:VasDeferens xref: HAO:0001052 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d1/Male_anatomy_en.svg/200px-Male_anatomy_en.svg.png xref: MA:0000413 xref: MESH:A.05.360.444.930 xref: MIAA:0000129 xref: ncithesaurus:Vas_Deferens xref: OG:0001135 xref: OpenCyc:Mx4rvjv7bpwpEbGdrcN5Y29ycA xref: SCTID:245467009 xref: WBbt:0005337 xref: ZFA:0001268 is_a: UBERON:0000058 ! duct is_a: UBERON:0005904 ! implied link automatically realized ! duct of male reproductive system relationship: part_of UBERON:0000079 ! male reproductive system relationship: part_of UBERON:0006947 ! male genital duct [Term] id: UBERON:0001001 name: chitin-based cuticle alt_id: UBERON:FBbt_00004970 def: "The main structural component of arthropod cuticle is a polysaccharide, chitin, composed of N-acetylglucosamine units, together with proteins and lipids[WP]." [https://sourceforge.net/tracker/index.php?func=detail&aid=3348965&group_id=36855&atid=440764, UBERON:cjm, Wikipedia:Cuticle#Invertebrate_zoology] comment: TODO - split from exoskeleton? Also: See above sf item to see if this belongs in GO subset: uberon_slim synonym: "arthropod cuticle" RELATED [] synonym: "cuticle" NARROW [FBbt:00004970] synonym: "exoskeleton" BROAD [] synonym: "insect cuticle" RELATED [] xref: EFO:0000944 xref: FBbt:00004970 xref: HAO:0000240 xref: MAT:0000150 xref: MIAA:0000150 xref: OpenCyc:Mx4rvVkBTJwpEbGdrcN5Y29ycA is_a: UBERON:0001002 ! implied link automatically realized ! cuticle relationship: develops_from UBERON:0007376 ! outer epithelial layer relationship: part_of UBERON:0002416 ! integumental system [Term] id: UBERON:0001002 name: cuticle alt_id: UBERON:FBbt_00004970-MIAA_0000150-WBbt_0005755 def: "tough but flexible, non-mineral outer coverings of an organism, or parts of an organism, that provide protection. Cuticles are non-homologous, differing in their origin, structure and chemical composition[WP]." [http://sourceforge.net/tracker/?func=detail&aid=3348965&group_id=36855&atid=440764, Wikipedia:Cuticle] comment: TODO - check cuticle vs exoskeleton. Note that GO has a very generic definition of cuticle. See also arthropod-anatomy ontology subset: uberon_slim synonym: "cuticula" RELATED [BTO:0001600] xref: BTO:0001600 xref: ncithesaurus:Cuticle is_a: UBERON:0000476 ! acellular anatomical structure disjoint_from: UBERON:0004882 ! eponychium [Term] id: UBERON:0001003 name: epidermis alt_id: UBERON:FBbt_00004993-FBbt_00005401-FMA_70596-MA_0000153-MIAA_0000154-WBbt_0005733-XAO_0000028-ZFA_0000105 def: "The outer layer of the skin[WP]. cellular, multilayered epithelium derived from the ectoderm[ZFA]." [ISBN10:0073040584 "Vertebrates, Kardong", Wikipedia:Epidermis_(skin)] comment: Zebrafish epidermis consists only of living cells unlike terrestrial vertebrates in which dead, keratinized cells are present. In terrestrial vertebrates the epidermis often forms an outer keratinized or cornified layer, the stratum corneum. Interaction between the epideris and dermis gives rise to feathers (birds), hair and mammary glands (mammals), teeth and scales (placoid: chondrichthyans; cosmoids, ganoid, cycloid in bony fishes). subset: uberon_slim subset: vertebrate_core synonym: "adult epidermis" EXACT [] synonym: "skin" BROAD [] synonym: "vertebrate epidermis" EXACT [] xref: AAO:0000143 xref: BTO:0000404 xref: EFO:0000954 xref: EHDAA2:0001844 xref: EMAPA:17525 xref: EV:0100153 xref: FMA:70596 xref: GAID:932 xref: MA:0000153 xref: MAT:0000154 xref: MESH:A.10.272.497 xref: MIAA:0000154 xref: ncithesaurus:Epidermis xref: OG:0000077 xref: SCTID:361694003 xref: TAO:0000105 xref: XAO:0000028 xref: ZFA:0000105 is_a: UBERON:0000483 ! epithelium is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0007376 ! implied link automatically realized ! outer epithelial layer relationship: adjacent_to UBERON:0002067 ! dermis relationship: develops_from UBERON:0007383 ! enveloping layer of ectoderm relationship: part_of UBERON:0002097 ! skin of body relationship: part_of UBERON:0002199 ! integument relationship: replaces UBERON:0003055 ! periderm relationship: surrounds UBERON:0000468 ! multi-cellular organism [Term] id: UBERON:0001004 name: respiratory system alt_id: UBERON:FBbt_00005024-FMA_7158-MA_0000327-MIAA_0000030-XAO_0000117-ZFA_0000272 def: "Functional system which consists of structures involved in respiration.." [Wikipedia:Respiratory_system] comment: This class was created automatically from a combination of ontologies subset: functional_classification subset: uberon_slim subset: vertebrate_core synonym: "apparatus respiratorius" EXACT [] synonym: "apparatus respiratorius " RELATED [BTO:0000203] synonym: "Atmungssystem" RELATED [BTO:0000203] synonym: "respiratory system" EXACT [] xref: AAO:0000541 xref: BTO:0000203 xref: EFO:0000804 xref: EHDAA:2203 xref: EHDAA2:0001604 xref: EMAPA:16727 xref: EV:0100036 xref: FMA:7158 xref: GAID:78 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5e/Respiratory_system_complete_en.svg/200px-Respiratory_system_complete_en.svg.png xref: MA:0000327 xref: MAT:0000030 xref: MESH:A.04 xref: MIAA:0000030 xref: ncithesaurus:Respiratory_System xref: OG:0000202 xref: OpenCyc:Mx4rvVjzFJwpEbGdrcN5Y29ycA xref: SCTID:278197002 xref: TAO:0000272 xref: XAO:0000117 xref: ZFA:0000272 is_a: UBERON:0000467 ! implied link automatically realized ! anatomical system disjoint_from: UBERON:0000949 ! endocrine system disjoint_from: UBERON:0000990 ! reproductive system disjoint_from: UBERON:0001007 ! digestive system disjoint_from: UBERON:0001008 ! excretory system disjoint_from: UBERON:0001009 ! circulatory system disjoint_from: UBERON:0001016 ! nervous system disjoint_from: UBERON:0001033 ! gustatory system disjoint_from: UBERON:0001434 ! skeletal system disjoint_from: UBERON:0002204 ! musculoskeletal system disjoint_from: UBERON:0002294 ! biliary system disjoint_from: UBERON:0002330 ! exocrine system disjoint_from: UBERON:0002390 ! hematopoietic system disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system [Term] id: UBERON:0001005 name: respiratory airway alt_id: UBERON:FBbt_00005043-FMA_7394-MA_0000441-MIAA_0000137-XAO_0000118 def: "An airway through which respiratory air passes in organisms." [Wikipedia:Trachea] comment: This class generically groups trachea and analagous structures throughout metazoa. Consider renaming, as the term could be taken to mean lumen of tracheal system (e.g. in SNOMED) subset: grouping_class subset: uberon_slim xref: SCTID:361380005 is_a: UBERON:0003103 ! compound organ relationship: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0001006 name: spiracle alt_id: UBERON:FBbt_00005054-MIAA_0000208 def: "The mostly slit-like opening on the body surface through which air is taken into the respiratory system." [ISBN:3110148986, Wikipedia:Spiracle] comment: This class was created automatically from a combination of ontologies. In elasmobranchs (sharks and rays), a spiracle is found behind each eye, and is often used to pump water through the gills while the animal is at rest (Fouts, 2003). A spiracle is also found in primitive bony fishes as the chirrups. TODO - check GO:0035277-spiracle morphogenesis, open tracheal system - taxon constraint in GO subset: grouping_class subset: uberon_slim synonym: "open tracheal system spiracle" NARROW [GO:0035277] synonym: "spiracle of open tracheal system" NARROW [GO:0035277] synonym: "spiracular gland" RELATED [] xref: EFO:0000936 xref: FBbt:00005054 xref: HAO:0000950 xref: MAT:0000208 xref: MIAA:0000208 xref: TGMA:0000578 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0001007 name: digestive system alt_id: UBERON:FBbt_00005055-FMA_7152-MA_0000323-MIAA_0000018-WBbt_0005748-XAO_0000125-ZFA_0000339 def: "Anatomical system that has as its parts the organs devoted to the ingestion, digestion, and assimilation of food and the discharge of residual wastes." [FB:gg, NLM:alimentary+system, Wikipedia:Digestive_system] comment: note that many anatomy ontologies consider gastrointestinal system synonymous with digestive system. here we follow MA in dividing digestive system into gastrointestinal and hepatobiliary. hepatobiliary includes the liver and biliary tract. species-specific AO classes are categorized according to whether liver is included. For example, XAO includes liver as part of XAO:0000125 alimentary system, so we assume this class is the more generic class subset: uberon_slim subset: vertebrate_core synonym: "alimentary system" RELATED [] synonym: "alimentary tract" RELATED [] synonym: "gastrointestinal system" RELATED [] synonym: "gut" RELATED [] xref: AAO:0000129 xref: BILA:0000082 xref: BTO:0000058 xref: EFO:0000793 xref: EV:0100056 xref: FBbt:00005055 xref: FMA:7152 xref: GAID:278 xref: galen:DigestiveSystem xref: MA:0002431 xref: MAT:0000018 xref: MESH:A.03 xref: MIAA:0000018 xref: ncithesaurus:Digestive_System xref: SCTID:278859004 xref: TADS:0000170 xref: TAO:0000339 xref: WBbt:0005748 xref: XAO:0000125 xref: ZFA:0000339 is_a: UBERON:0000467 ! implied link automatically realized ! anatomical system disjoint_from: UBERON:0000949 ! endocrine system disjoint_from: UBERON:0000990 ! reproductive system disjoint_from: UBERON:0001004 ! respiratory system disjoint_from: UBERON:0001008 ! excretory system disjoint_from: UBERON:0001009 ! circulatory system disjoint_from: UBERON:0001016 ! nervous system disjoint_from: UBERON:0001033 ! gustatory system disjoint_from: UBERON:0001434 ! skeletal system disjoint_from: UBERON:0002204 ! musculoskeletal system disjoint_from: UBERON:0002294 ! biliary system disjoint_from: UBERON:0002330 ! exocrine system disjoint_from: UBERON:0002390 ! hematopoietic system disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system [Term] id: UBERON:0001008 name: excretory system alt_id: UBERON:FBbt_00005056-FMA_7159-MIAA_0000027-WBbt_0005736-XAO_0000143-ZFA_0000163 def: "The excretory system is the system of an organism that mainly performs the function of excretion, the bodily process of discharging wastes. It is responsible for the elimination of wastes produced by the processes that maintain homeostasis." [BILA:0000015, Wikipedia:Excretory_system] comment: In various sources such as Encyclopedia Britannica, the excretory and urinary systems are indeed the same system (see wikipedia talk page) subset: uberon_slim subset: vertebrate_core synonym: "renal or urinary system" RELATED [EHDAA:5901] synonym: "renal system" EXACT [GO:0001977] synonym: "renal/urinary system" RELATED [] synonym: "systema urinaria" EXACT [] synonym: "systema urinarium" RELATED [BTO:0003092] synonym: "urinary system" EXACT [] synonym: "urinary system" RELATED [] synonym: "urinary tract" RELATED [] xref: AAO:0010257 xref: BILA:0000015 xref: BTO:0003092 xref: EFO:0000803 xref: EHDAA:5901 xref: EHDAA2:0001601 xref: EMAPA:17366 xref: EV:0100095 xref: FBbt:00005056 xref: FMA:7159 xref: GAID:391 xref: galen:UrinaryTract xref: MA:0000325 xref: MAT:0000027 xref: MESH:A.05.810 xref: MIAA:0000027 xref: ncithesaurus:Urinary_System xref: OG:0000723 xref: SCTID:362204003 xref: TADS:0000162 xref: TAO:0000163 xref: WBbt:0005736 xref: XAO:0000143 xref: ZFA:0000163 is_a: UBERON:0000467 ! implied link automatically realized ! anatomical system disjoint_from: UBERON:0000949 ! endocrine system disjoint_from: UBERON:0000990 ! reproductive system disjoint_from: UBERON:0001004 ! respiratory system disjoint_from: UBERON:0001007 ! digestive system disjoint_from: UBERON:0001009 ! circulatory system disjoint_from: UBERON:0001016 ! nervous system disjoint_from: UBERON:0001033 ! gustatory system disjoint_from: UBERON:0001434 ! skeletal system disjoint_from: UBERON:0002204 ! musculoskeletal system disjoint_from: UBERON:0002294 ! biliary system disjoint_from: UBERON:0002330 ! exocrine system disjoint_from: UBERON:0002390 ! hematopoietic system disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system [Term] id: UBERON:0001009 name: circulatory system alt_id: UBERON:FBbt_00005057-FMA_7161-MA_0000010-MIAA_0000016-XAO_0000100-ZFA_0000010 def: "organ system that passes nutrients (such as amino acids and electrolytes), gases, hormones, blood cells, etc. to and from cells in the body to help fight diseases and help stabilize body temperature and pH to maintain homeostasis[WP]." [Wikipedia:Circulatory_system] comment: the cardiovascular system and the lymphatic system are parts of the circulatory system subset: uberon_slim xref: AAO:0000959 xref: FBbt:00005057 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/Circulatory_System_en.svg/200px-Circulatory_System_en.svg.png xref: OG:0001248 xref: OpenCyc:Mx4rvVjzG5wpEbGdrcN5Y29ycA is_a: UBERON:0000467 ! anatomical system disjoint_from: UBERON:0000949 ! endocrine system disjoint_from: UBERON:0000990 ! reproductive system disjoint_from: UBERON:0001004 ! respiratory system disjoint_from: UBERON:0001007 ! digestive system disjoint_from: UBERON:0001008 ! excretory system disjoint_from: UBERON:0001016 ! nervous system disjoint_from: UBERON:0001033 ! gustatory system disjoint_from: UBERON:0001434 ! skeletal system disjoint_from: UBERON:0002204 ! musculoskeletal system disjoint_from: UBERON:0002294 ! biliary system disjoint_from: UBERON:0002330 ! exocrine system disjoint_from: UBERON:0002390 ! hematopoietic system disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system [Term] id: UBERON:0001010 name: diaphysis of ulna synonym: "body of ulna" EXACT [FMA:33760] synonym: "corpus ulnae" EXACT [FMA:33760] synonym: "shaft of ulna" EXACT [FMA:33760] synonym: "ulnar diaphysis" EXACT [FMA:33760] xref: FMA:33760 xref: SCTID:302520004 is_a: UBERON:0004769 ! implied link automatically realized ! diaphysis relationship: part_of UBERON:0001424 intersection_of: UBERON:0004769 ! diaphysis intersection_of: part_of UBERON:0001424 ! ulna [Term] id: UBERON:0001011 name: hemolymph alt_id: UBERON:FBbt_00005061-MIAA_0000054 def: "Blood analogue used by all arthropods and most mollusks that have an open circulatory system. In these animals there is no distinction between blood and interstitial fluid. The liquid fills all of the interior (the hemocoel) of the body and surrounds all cells." [Wikipedia:Hemolymph] subset: uberon_slim synonym: "haemolymph" RELATED [] xref: BTO:0000572 xref: FBbt:00005061 xref: GAID:1220 xref: MAT:0000054 xref: MESH:A.13.453 xref: MIAA:0000054 xref: TGMA:0000000 is_a: UBERON:0000463 ! portion of organism substance relationship: part_of UBERON:0001009 ! circulatory system [Term] id: UBERON:0001012 name: head of radius def: "The head of the radius has a cylindrical form, and on its upper surface is a shallow cup or fovea for articulation with the capitulum (or capitellum) of the humerus. The circumference of the head is smooth; it is broad medially where it articulates with the radial notch of the ulna, narrow in the rest of its extent, which is embraced by the annular ligament. The deepest point in the fovea is not axi-symmetric with the long axis of the radius, creating a cam effect during pronation and supination[WP]." [Wikipedia:Head_of_radius] synonym: "radial head" EXACT [FMA:33773] xref: FMA:33773 xref: galen:HeadOfRadius xref: SCTID:181941003 is_a: UBERON:0005055 ! implied link automatically realized ! zone of long bone is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ relationship: part_of UBERON:0001490 {source="FMA"} ! elbow joint relationship: part_of UBERON:0004413 {source="FMA"} ! proximal epiphysis of radius [Term] id: UBERON:0001013 name: adipose tissue alt_id: UBERON:FBbt_00005065-FMA_20110-MA_0000009-MIAA_0000015-XAO_0003049 def: "Dense irregular connective tissue, which predominantly consists of adipocytes. Fat is stored in adipose tissue." [NLM:adipose+tissue, Wikipedia:Adipose_tissue] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "adipose" RELATED [BTO:0001487] synonym: "bodyfat" RELATED [BTO:0001487] synonym: "fat" EXACT [MA:0000009] synonym: "fat tissue" EXACT [] synonym: "fatty tissue" EXACT [] xref: AAO:0000001 xref: AEO:000020 xref: BTO:0001487 xref: EFO:0000234 xref: EFO:0000790 xref: EHDAA2:0003120 xref: EV:0100381 xref: FMA:20110 xref: GAID:920 xref: galen:FattyTissue xref: MA:0000009 xref: MAT:0000015 xref: MESH:A.10.165.114 xref: MIAA:0000015 xref: ncithesaurus:Adipose_Tissue xref: OG:0001284 xref: OpenCyc:Mx4rvVjc_ZwpEbGdrcN5Y29ycA xref: SCTID:55603005 xref: XAO:0003049 xref: ZFA:0005345 is_a: UBERON:0002384 {source="MA"} ! connective tissue disjoint_from: UBERON:0003714 ! neural tissue [Term] id: UBERON:0001014 name: fat body alt_id: UBERON:FBbt_00005066-FMA_58616-MA_0002481-MIAA_0000096-XAO_0003050 def: "the encapsulated adipose tissue." [MP:0005334] synonym: "fat pad" EXACT [] is_obsolete: true consider: UBERON:0003917 [Term] id: UBERON:0001015 name: musculature alt_id: UBERON:FBbt_00005069-FMA_30316-FMA_32558-MA_0000015-MIAA_0000025-WBbt_0005737-XAO_0000172-ZFA_0000548-ZFA_0005145 def: "Anatomical system that allows the animal move, includes all muscles[WP]." [BTO:0000887, Wikipedia:Muscular_system, ZFIN:curator] comment: In FMA this is classified as a set of organs. ZFA musculature system has subtypes, so it is classified here. WBbt muscular system has subtypes so it goes here. Note that we use the MA term set of skeletal muscles here as it seems most appropriate (not MA:musculature) subset: uberon_slim subset: vertebrate_core synonym: "muscle group" EXACT [] synonym: "muscle system" RELATED [] synonym: "muscles" RELATED [] synonym: "muscles set" EXACT [] synonym: "musculature" EXACT [] synonym: "musculature system" RELATED [] synonym: "musculi" EXACT [FMA:32558, FMA:TA] synonym: "set of muscles" EXACT [FMA:32558] synonym: "set of organs" EXACT [] synonym: "set of skeletal muscles" EXACT [MA:0000165] xref: AAO:0011066 xref: BTO:0000887 xref: EFO:0001949 xref: FMA:32558 xref: MA:0000165 xref: ncithesaurus:Muscle xref: OpenCyc:Mx4rvVjmr5wpEbGdrcN5Y29ycA xref: TAO:0000548 xref: WBbt:0005737 xref: ZFA:0000548 is_a: UBERON:0000480 ! anatomical group is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0000383 ! musculature of body [Term] id: UBERON:0001016 name: nervous system alt_id: UBERON:FBbt_00005093-FMA_7157-MA_0000016-MIAA_0000026-WBbt_0005735-XAO_0000177-ZFA_0000396 def: "a network of specialized cells that communicate information about an organism's surroundings and itself[Wikipedia]." [ISBN:0-14-051288-8, ISBN:3110148986, NLM:nervous+system, WB:rynl, Wikipedia:Nervous_system, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "nerve net" NARROW [Wikipedia:Nerve_net] synonym: "Nervensystem" RELATED [BTO:0001484] xref: AAO:0000324 xref: BILA:0000079 xref: BTO:0001484 xref: EFO:0000802 xref: EHDAA:826 xref: EHDAA2:0001246 xref: EMAPA:16469 xref: EV:0100162 xref: FBbt:00005093 xref: FMA:7157 xref: GAID:466 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/ba/Nervous_system_diagram.png/200px-Nervous_system_diagram.png xref: MA:0000016 xref: MAT:0000026 xref: MESH:A.08 xref: MIAA:0000026 xref: ncithesaurus:Nervous_System xref: NIF_GrossAnatomy:birnlex_844 xref: OG:0000402 xref: OpenCyc:Mx4rvViT_pwpEbGdrcN5Y29ycA xref: SCTID:278196006 xref: TAO:0000396 xref: WBbt:0005735 xref: XAO:0000177 xref: ZFA:0000396 is_a: UBERON:0000467 ! anatomical system is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure disjoint_from: UBERON:0000949 ! endocrine system disjoint_from: UBERON:0000990 ! reproductive system disjoint_from: UBERON:0001004 ! respiratory system disjoint_from: UBERON:0001007 ! digestive system disjoint_from: UBERON:0001008 ! excretory system disjoint_from: UBERON:0001009 ! circulatory system disjoint_from: UBERON:0001033 ! gustatory system disjoint_from: UBERON:0001434 ! skeletal system disjoint_from: UBERON:0002204 ! musculoskeletal system disjoint_from: UBERON:0002294 ! biliary system disjoint_from: UBERON:0002330 ! exocrine system disjoint_from: UBERON:0002390 ! hematopoietic system disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system relationship: develops_from UBERON:0000924 ! ectoderm [Term] id: UBERON:0001017 name: central nervous system alt_id: UBERON:FBbt_00005094-FMA_55675-MA_0000167-XAO_0000215-ZFA_0000012 def: "The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord[GO]. The part of the nervous system which in vertebrates consists of the brain and spinal cord, to which sensory impulses are transmitted and from which motor impulses pass out, and which supervises and coordinates the activity of the entire nervous system[XAO]. Neuraxis plus retina[INCF]." [FB:gg, ISBN:3110148986, NLM:central+nervous+system, Wikipedia:Central_nervous_system, ZFIN:curator] comment: ZFA retina NOT part_of CNS. XAO excludes retina in text def, retina part_of CNS. MA retina NOT part_of CNS. NIF_GA retina NOT part_of CNS. Fly also excludes it. EFO also excludes it. GO also excludes it. subset: uberon_slim subset: vertebrate_core synonym: "cerebrospinal axis" EXACT [FMA:55675] synonym: "CNS" EXACT [] synonym: "neuraxis" EXACT [FMA:55675] synonym: "systema nervosum centrale" EXACT [FMA:55675, FMA:TA] xref: AAO:0000090 xref: BILA:0000080 xref: BTO:0000227 xref: EFO:0000908 xref: EHDAA:828 xref: EHDAA2:0000225 xref: EMAPA:16470 xref: EMAPA:16754 xref: EV:0100163 xref: FBbt:00005094 xref: FMA:55675 xref: GAID:570 xref: MA:0000167 xref: MAT:0000457 xref: MESH:A.08.186 xref: ncithesaurus:Central_Nervous_System xref: NIF_GrossAnatomy:birnlex_1099 xref: OG:0000293 xref: OpenCyc:Mx4rvzYt3pwpEbGdrcN5Y29ycA xref: SCTID:278199004 xref: TAO:0000012 xref: XAO:0000215 xref: ZFA:0000012 is_a: UBERON:0000073 ! regional part of nervous system relationship: part_of UBERON:0001016 ! nervous system relationship: part_of UBERON:0005743 ! central nervous system plus retina [Term] id: UBERON:0001018 name: axon tract alt_id: UBERON:FBbt_00005100-FMA_76739 def: "A group of axons linking two or more neuropils and having a common origin, termination[FBbt]." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html] comment: WP says this is the analog of peripheral nerves in CNS synonym: "neuraxis tract" EXACT [FMA:83847] synonym: "tract" RELATED [] synonym: "tract of neuraxis" EXACT [FMA:83847] xref: EV:0100304 xref: FBbt:00005100 xref: FMA:83847 is_a: UBERON:0000122 ! neuron projection bundle relationship: part_of UBERON:0001017 ! central nervous system [Term] id: UBERON:0001019 name: fascicle alt_id: UBERON:FBbt_00005101-FMA_76740 def: "A slender neuron projection bundle[FBbt]." [Wikipedia:Nerve_fascicle] comment: TODO - invert specific? note FBbt class not disjoint from tract. Consider merging with 'neuron projection bundle' subset: uberon_slim synonym: "fasciculus" EXACT [] synonym: "nerve bundle" EXACT [FMA:12235] synonym: "nerve fasciculus" EXACT [FMA:12235] synonym: "neural fasciculus" EXACT [FMA:12235] xref: BTO:0004101 xref: FBbt:00005101 xref: FMA:12235 xref: ncithesaurus:Fascicle xref: NIF_GrossAnatomy:birnlex_872 xref: TGMA:0000088 is_a: UBERON:0000122 ! neuron projection bundle [Term] id: UBERON:0001020 name: commissure alt_id: UBERON:FBbt_00005103-FMA_76741 def: "White matter fiber bundle that crosses the midline of the brain or spinal cord[NIF]. The transverse connection between two longitudinal parts, e.g. nerves, tracheae. In the context of Drosophila refers to a broad band of axons connecting the same neuropils each side of the brain[FBbt]." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html, ISBN:3110148986, Wikipedia:Commissure] comment: *not* the same as FMA:76741 Commissure subset: uberon_slim synonym: "commissure of neuraxis" EXACT [FMA:83906] synonym: "neuraxis commissure" EXACT [FMA:83906] xref: FBbt:00005103 xref: FMA:83906 xref: ncithesaurus:Commissure xref: NIF_GrossAnatomy:nlx_anat_20090513 xref: OpenCyc:Mx4rdBrmE6gOEdudWQACs5b6Bw xref: TADS:0000201 is_a: UBERON:0001018 ! axon tract [Term] id: UBERON:0001021 name: nerve alt_id: UBERON:FBbt_00005099-FMA_5914 alt_id: UBERON:FBbt_00005105-FMA_65132-MA_0000217-XAO_0003047-ZFA_0007009 def: "an enclosed, cable-like bundle of peripheral axons [wikipedia]. A portion of tissue which is a fasiculated group of axons[ZFA]. Segment of neural tree organ which has as its parts a nerve trunk and its branches; together with other nerves of the same tree it constitutes a neural tree. Examples: chorda tympani, digastric branch of facial nerve, greater petrosal nerve, posterior cutaneous branch of posterior ramus of cervical nerve, superior lateral cutaneous nerve of arm[FMA]." [FMA:65132, Wikipedia:Nerve, ZFA:0007009, ZFIN:curator] comment: check nerve vs peripheral nerve vs tract. Check isa hierarchy - we include under neural tissue as well as neuron projection bundle for now. FMA also has this under organ segment subset: uberon_slim subset: vertebrate_core synonym: "neural subtree" RELATED [FMA:65132] xref: AAO:0011070 xref: AEO:0000137 xref: BTO:0000925 xref: EHDAA:2851 xref: EHDAA:3776 xref: EHDAA:4657 xref: EHDAA2:0003137 xref: EV:0100162 xref: FBbt:00005105 xref: FMA:65132 xref: GAID:758 xref: galen:Nerve xref: MA:0000217 xref: ncithesaurus:Nerve xref: OpenCyc:Mx4rwP3lkpwpEbGdrcN5Y29ycA xref: SCTID:256864008 xref: TAO:0007009 xref: XAO:0003047 xref: ZFA:0007009 is_a: UBERON:0000122 {source="FBbt"} ! neuron projection bundle is_a: UBERON:0003714 {source="EHDAA2"} ! neural tissue relationship: part_of UBERON:0000010 ! peripheral nervous system [Term] id: UBERON:0001022 name: cell body alt_id: UBERON:FBbt_00005107-FMA_67301 def: "Cell component which consists of the plasma membrane and the cytoplasm surrounding the nucleus.[FMA]" [FMA:FMA, http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html, Wikipedia:Cell_body] comment: TODO - use GO subset: uberon_slim synonym: "cell soma" EXACT [] synonym: "soma" RELATED [] xref: FBbt:00005107 xref: FMA:67301 xref: GO:0043025 xref: NIF_Subcellular:sao1044911821 is_a: UBERON:0000470 ! cell part [Term] id: UBERON:0001023 name: dendrite alt_id: UBERON:FBbt_00005110-FMA_67314 def: "The region of a neuron receiving inputs from other neurons, typically a slender neurite, often branched. In insect neurons, this is often not a clear designation and often presynaptic sites co-extend with postsynaptic ones." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html, Wikipedia:Dendrite] comment: TODO - use GO subset: uberon_slim xref: FBbt:00005110 xref: FMA:67314 xref: GAID:749 xref: GO:0030425 xref: MESH:A.08.663.256 xref: ncithesaurus:Dendrite xref: NIF_Subcellular:sao1211023249 xref: OpenCyc:Mx4rviIdspwpEbGdrcN5Y29ycA xref: TGMA:0001373 is_a: UBERON:0001024 ! neurite [Term] id: UBERON:0001024 name: neurite alt_id: UBERON:FBbt_00005113-FMA_61814 def: "One of the processes or extensions of a neuron, axon or dendrite or cell body fiber. // Cell appendage of the neuron which includes the axon and the dendrite." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html, Wikipedia:Neurite] comment: TODO - use GO subset: uberon_slim xref: FBbt:00005113 xref: FMA:61814 xref: GAID:751 xref: GO:0043005 xref: MESH:A.08.663.256.500 xref: NIF_Subcellular:sao-867568886 is_a: UBERON:0000470 ! cell part [Term] id: UBERON:0001025 name: synapse alt_id: UBERON:FBbt_00005114-FMA_67408 def: "The structural contact that is the site of transmission between neurons, identified by a presynaptic ribbon and synaptic vesicles as the input element and one or (usually) more postsynaptic elements with various specializations (membrane densities, cisternae, etc.)." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html, Wikipedia:Synapse] comment: TODO - use GO subset: uberon_slim synonym: "synaptic junction" EXACT [] xref: FBbt:00005114 xref: FMA:67408 xref: GAID:766 xref: GO:0045202 xref: MESH:A.08.850 xref: ncithesaurus:Synapse xref: NIF_Subcellular:sao914572699 xref: SCTID:362298009 is_a: UBERON:0000470 ! cell part [Term] id: UBERON:0001026 name: motor nerve alt_id: UBERON:FBbt_00005135-FMA_5867 def: "General anatomical term applied to nerves in which somatic efferent nerve fibers predominate[FMA]. A motor nerve is an efferent nerve that exclusively contains the axons of somatic and branchial motoneurons, which innervate skeletal muscles (that ensure locomotion) and branchial muscles (that motorize the face and neck)[WP]." [Wikipedia:Motor_nerve] synonym: "efferent nerve" RELATED [] synonym: "nervus motorius" EXACT [] is_obsolete: true [Term] id: UBERON:0001027 name: sensory nerve alt_id: UBERON:FBbt_00005136-FMA_5868 def: "General anatomical term applied to nerves in which somatic afferent nerve fibers predominate[FMA]. nerves that receive sensory stimuli made up of nerve fibers, called sensory fibers (mechanoreceptor fibers sense body movement and pressure placed against the body, and nociceptor fibers sense tissue injury)[WP]." [Wikipedia:Sensory_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "afferent nerve" RELATED [] synonym: "nervus sensorius" EXACT [] xref: AEO:0000201 xref: EHDAA2:0003200 xref: FBbt:00005136 xref: FMA:5868 xref: OpenCyc:Mx4rv0GdXpwpEbGdrcN5Y29ycA is_a: UBERON:0001021 ! nerve [Term] id: UBERON:0001028 name: diaphysis of radius synonym: "body of radius" EXACT [FMA:33782] synonym: "corpus radii" EXACT [FMA:33782] synonym: "radial diaphysis" EXACT [FMA:33782] synonym: "shaft of radius" EXACT [FMA:33782] xref: FMA:33782 xref: SCTID:302518002 is_a: UBERON:0004769 ! implied link automatically realized ! diaphysis relationship: part_of UBERON:0001423 intersection_of: UBERON:0004769 ! diaphysis intersection_of: part_of UBERON:0001423 ! radius [Term] id: UBERON:0001029 name: neuromuscular junction alt_id: UBERON:FBbt_00005142-FMA_61803 def: "." [Wikipedia:Neuromuscular_junction] comment: TODO - use GO subset: uberon_slim synonym: "myoneural junction" EXACT [] xref: FBbt:00005142 xref: FMA:61803 xref: GAID:809 xref: GO:0031594 xref: MESH:A.08.800.550.550.550 xref: NIF_Subcellular:sao1124888485 is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0001030 name: synaptic ribbon alt_id: UBERON:FBbt_00005143-FMA_67107 comment: TODO - use GO synonym: "ribbon synapse" EXACT [] xref: FBbt:00005143 xref: FMA:67107 xref: NIF_Subcellular:sao1884931180 is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system is_a: UBERON:0001025 ! synapse relationship: part_of UBERON:0001029 ! neuromuscular junction [Term] id: UBERON:0001031 name: neurilemma alt_id: UBERON:FBbt_00005151-FMA_62976 def: "thin membranous sheath around a nerve fiber[TFD]." [http://www.thefreedictionary.com/neurolemma, Wikipedia:Neurilemma] comment: FMA def is 'Neural tissue which consists of Schwann cells' which does not fit, but we still use 'neural tissue' here. WP def specifically states Schwann cells, which would restrict it to PNS subset: uberon_slim synonym: "endoneural membrane" RELATED [BTO:0003048] synonym: "neurolemma" EXACT [] synonym: "Schwann's membrane" RELATED [BTO:0003048] synonym: "sheath of Schwann" EXACT [] xref: BTO:0003048 xref: FBbt:00005151 xref: FMA:62976 xref: GAID:730 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/34/Gray631.png/200px-Gray631.png xref: MESH:A.08.561.600 xref: ncithesaurus:Sheath_of_Schwann is_a: UBERON:0003714 ! neural tissue relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0001032 name: sensory system alt_id: UBERON:FBbt_00005155-FMA_78499-MA_0002442-MIAA_0000031-WBbt_0005832-ZFA_0000282 def: "Anatomical system that overlaps the nervous system and is responsible for receiving and processing sensory information." [Wikipedia:Sensory_system] comment: note the distinct between entire sensory system and individual system. this reconciles is_a and part_of distinctions between ssAOs subset: uberon_slim subset: vertebrate_core synonym: "organa sensuum" EXACT [FMA:75259, FMA:TA] synonym: "sense organ subsystem" EXACT [] synonym: "sense organs" EXACT [FMA:75259] synonym: "sense organs set" EXACT [FMA:75259] synonym: "sensory organ system" RELATED [] synonym: "sensory subsystem" EXACT [] xref: AAO:0000555 xref: BILA:0000099 xref: EFO:0000805 xref: EHDAA2:0003094 xref: EMAPA:16192 xref: FBbt:00005827 xref: FMA:75259 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c0/Gray722.png/200px-Gray722.png xref: MA:0002442 xref: MAT:0000031 xref: MESH:A.09 xref: MIAA:0000031 xref: NIF_GrossAnatomy:nlx_anat_090816 xref: TAO:0000282 xref: XAO:0003194 xref: ZFA:0000282 is_a: UBERON:0000467 ! anatomical system relationship: overlaps UBERON:0001016 ! nervous system relationship: part_of UBERON:0004456 ! entire sense organ system [Term] id: UBERON:0001033 name: gustatory system alt_id: UBERON:FBbt_00005159-FMA_7194-MA_0002446-MIAA_0000275-ZFA_0001101 def: "A subset of the sensory system for the sensing of taste." [Wikipedia:Gustatory_system] comment: in ZFA and MA this is a subtype of sensory system. we should change sensory system to disambiguate parts and wholes subset: uberon_slim subset: vertebrate_core synonym: "gustatory organ system" EXACT [] synonym: "taste system" EXACT [] xref: AAO:0010577 xref: BILA:0000143 xref: EFO:0000830 xref: FMA:7194 xref: MA:0002446 xref: MAT:0000275 xref: MIAA:0000275 xref: NIF_GrossAnatomy:nlx_anat_090803 xref: SCTID:423940004 xref: TAO:0001101 xref: XAO:0003197 xref: ZFA:0001101 is_a: UBERON:0000467 ! implied link automatically realized ! anatomical system disjoint_from: UBERON:0000949 ! endocrine system disjoint_from: UBERON:0000990 ! reproductive system disjoint_from: UBERON:0001004 ! respiratory system disjoint_from: UBERON:0001007 ! digestive system disjoint_from: UBERON:0001008 ! excretory system disjoint_from: UBERON:0001009 ! circulatory system disjoint_from: UBERON:0001016 ! nervous system disjoint_from: UBERON:0001434 ! skeletal system disjoint_from: UBERON:0002204 ! musculoskeletal system disjoint_from: UBERON:0002294 ! biliary system disjoint_from: UBERON:0002330 ! exocrine system disjoint_from: UBERON:0002390 ! hematopoietic system disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system [Term] id: UBERON:0001034 name: photoreceptor alt_id: UBERON:FBbt_00005162-FMA_85613 def: "Can refer to a light sensitive organ, a photoreceptor cell or a photoreceptor protein. This class was made obsolete because it was ambiguous" [Wikipedia:Photoreceptor] xref: BTO:0001060 xref: FBbt:00005162 xref: FMA:85613 xref: GAID:778 is_obsolete: true [Term] id: UBERON:0001035 name: dento-alveolar joint alt_id: UBERON:FBbt_00005172-FMA_7495-MA_0001499 def: "Fibrous joint in which the periodontal ligament connects a tooth to the alveolar bone of the maxilla or mandible. Examples: Dento-alveolar joint of incisor tooth.[FMA]" [FMA:FMA, Wikipedia:Gomphosis] comment: This class was created automatically from a combination of ontologies synonym: "dento-alveolar syndesmosis" EXACT [FMA:7495] synonym: "peg-and-socket joint" EXACT [FMA:7495] synonym: "socket" EXACT [FMA:7495] synonym: "syndesmosis dentoalveolaris" EXACT [FMA:7495, FMA:TA] xref: FMA:7495 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6c/Gray1003.png/200px-Gray1003.png xref: MA:0001499 xref: OpenCyc:Mx4rveAQeZwpEbGdrcN5Y29ycA is_a: UBERON:0002209 {source="FMA"} ! fibrous joint is_a: UBERON:0002213 {source="MA"} ! cartilaginous joint is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001708 ! jaw [Term] id: UBERON:0001037 name: strand of hair alt_id: UBERON:FBbt_00005182-FMA_53667-MA_0000155-MIAA_0000160 def: "A filament, mostly protein, that grows from follicles found in the dermis[WP]." [Wikipedia:Hair] comment: this class defines an individual hair. todo - consider fur / coat of fur, which has_part hair. TODO: for now we treat vibrissa/whisker as a syonym, but these have different follicles. We could introduce subclasses (see also: Pangolin scales) subset: uberon_slim synonym: "coat hair" EXACT [] synonym: "coat/ hair" EXACT [] synonym: "fur" RELATED [] synonym: "hair" EXACT [] synonym: "microchaeta" RELATED [] synonym: "quill" RELATED SENSU [] synonym: "setulae" RELATED [] synonym: "vibrissa" RELATED SENSU [] synonym: "whisker" RELATED SENSU [] xref: BTO:0001501 xref: EFO:0000958 xref: EMAPA:18769 xref: EV:0100157 xref: FMA:53667 xref: GAID:71 xref: MA:0000155 xref: MAT:0000160 xref: MESH:A.17.360 xref: MIAA:0000160 xref: ncithesaurus:Hair xref: OG:0001191 xref: OpenCyc:Mx4rvVjOX5wpEbGdrcN5Y29ycA-Mp88EdaAAACgycbRww xref: SCTID:361702001 is_a: UBERON:0000021 ! cutaneous appendage is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: develops_from UBERON:0002073 ! hair follicle relationship: part_of UBERON:0002199 ! integument [Term] id: UBERON:0001038 name: chordotonal organ alt_id: UBERON:FBbt_00005215-MIAA_0000209 def: "Chordotonal organs are arthropod sensory structures consisting of special sensilla called the scolopidia, which are mechano-transducers and respond mainly to stretch or flexion. In insects, they consist of bundles of internal sensilla, each of which has a cap cell, an enveloping cell and one or more sense cells. The distal end of the organ is usually attached to the cuticle of the body wall, marked by a pit, a thickened disc or a nodule of chitin, and the base of the organ is connected with the hypodermis, often by a special ligament." [FB:FBrf0056378, Wikipedia:Chordotonal_organ] comment: This class was created automatically from a combination of ontologies subset: organ_slim subset: uberon_slim synonym: "ch" RELATED [] synonym: "scolopophorous organ" RELATED [] xref: EFO:0000940 xref: FBbt:00005215 xref: MAT:0000209 xref: MIAA:0000209 is_a: UBERON:0000020 ! sense organ [Term] id: UBERON:0001040 name: yolk sac alt_id: UBERON:FBbt_00005376-FMA_87180 def: "Membranous sac attached to an embryo, providing early nourishment in the form of yolk in bony fishes, sharks, reptiles, birds, and primitive mammals. It functions as the developmental circulatory system of the human embryo, before internal circulation begins. In the mouse, the yolk sac is the first site of blood formation, generating primitive macrophages and erythrocytes." [Wikipedia:Yolk_sac] comment: In therians, a structure homologous to the yolk sac is is present, but contains no yolk platelets. Instead it is filled with fluid [ISBN10:0073040584 "Vertebrates, Kardong"] subset: uberon_slim xref: BTO:0001471 xref: EFO:0003078 xref: EHDAA:164 xref: EHDAA2:0002212 xref: EMAPA:16085 xref: FMA:87180 xref: GAID:1301 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/17/Gray22.png/200px-Gray22.png xref: MESH:A.16.254.403.981 xref: ncithesaurus:Yolk_Sac xref: OG:0000830 xref: SCTID:362845002 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005631 ! extraembryonic membrane relationship: develops_from UBERON:0000925 {source="ISBN10:0073040584"} ! endoderm relationship: develops_from UBERON:0004872 {source="ISBN10:0073040584"} ! splanchnic layer of lateral plate mesoderm [Term] id: UBERON:0001041 name: foregut alt_id: UBERON:FBbt_00005379-FMA_45616-MA_0001526-XAO_0000232 def: "Anterior subdivision of a digestive tract[CJM]. An anterior part of the alimentary canal derived from the ectoderm[WP]." [Wikipedia:Foregut] comment: Note we define this generically to include invertebrates, but the class may be split in future. Note in FMA this class has no children - because its a dev classification? subset: developmental_classification subset: uberon_slim xref: AAO:0011042 xref: BILA:0000085 xref: BTO:0000507 xref: EHDAA:520 xref: EHDAA2:0000557 xref: EMAPA:16548 xref: FBbt:00005379 xref: FMA:45616 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9a/Gray27.png/200px-Gray27.png xref: MA:0001526 xref: ncithesaurus:Foregut xref: OG:0000285 xref: SCTID:361409009 xref: TGMA:0001014 xref: XAO:0000232 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004921 ! subdivision of digestive tract relationship: develops_from UBERON:0003104 {source="Wikipedia"} ! mesenchyme [Term] id: UBERON:0001042 name: chordate pharynx alt_id: UBERON:FBbt_00005380-FMA_46688-MA_0000432-MIAA_0000049-WBbt_0003681-ZFA_0000056 def: "Funnel-shaped fibromuscular tube that conducts food to the esophagus, and air to the larynyx and lungs. It is located posterior to the NASAL CAVITY; ORAL CAVITY; and LARYNX, and extends from the SKULL BASE to the inferior border of the CRICOID CARTILAGE anteriorly and to the inferior border of the C6 vertebra posteriorly. It is divided into the NASOPHARYNX; OROPHARYNX; and HYPOPHARYNX (laryngopharynx)[MESH]. Swollen region of the anterior foregut, posterior to the mouth and anterior to the liver; its walls form the jaws and gills[ZFA]." [Wikipedia:Pharynx] comment: Note that MA/FMA pharynx not part of digestive/alimentary system, we follow their lead here subset: uberon_slim subset: vertebrate_core synonym: "pharynx" BROAD SENSU [FMA:46688] xref: AAO:0000967 xref: BTO:0001049 xref: EFO:0000836 xref: EHDAA:2947 xref: EHDAA2:0001458 xref: EMAPA:16706 xref: EMAPA:18838 xref: EV:0100065 xref: FMA:46688 xref: GAID:155 xref: galen:Pharynx xref: MA:0000432 xref: MESH:A.03.867 xref: ncithesaurus:Pharynx xref: OG:0000462 xref: OpenCyc:Mx4rvViv7ZwpEbGdrcN5Y29ycA xref: TAO:0000056 xref: XAO:0003227 xref: ZFA:0000056 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0006562 ! pharynx relationship: develops_from UBERON:0009145 {source="EHDAA2"} ! pharyngeal region relationship: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0001043 name: esophagus alt_id: UBERON:FBbt_00005381-FMA_7131-MA_0000352-MIAA_0000048-XAO_0000127-ZFA_0000204 def: "Tube that connects the pharynx to the stomach. In mammals, the oesophagus connects the buccal cavity with the stomach. The stratified squamous non-keratinised epithelium lining the buccal cavity is continued through the pharynx down into the oesophagus. The lowest part of the oesophagus (ca. 2 cm) is lined with gastric mucosa and covered by peritoneum. The main body of the oesophagus is lined with small, simple mucous glands. Each gland opens into the lumen by a long duct which pierces the muscularis mucosae (Wilson and Washington, 1989). A sphincter is situated at the point where the oesophagus enters the stomach to prevent gastro-oesophageal reflux, i.e. to prevent acidic gastric contents from reaching stratified epithelia of the oesophagus, where they can cause inflammation and irritation (Wilson and Washington, 1989; Brown et al., 1993)." [http://www.rivm.nl/interspeciesinfo/inter/oesophagus/, Wikipedia:Esophagus] comment: esophagus NOT part of gut in MA. part of gut in ZFA. part_of gut (via UGIT) in FMA. Consider splitting. Interspecies: The human oesophagus is 25 cm long and has a diameter of ca. 2 cm. Only little information was found on the oesophagus in rat, rabbit and pig. The oesophagus of rat (75 x 2 mm) and rabbit has no mucous glands and the cardia of the stomach has a well-developed sphincter, which prevents them from vomiting (Hebel and Stromberg, 1988; Manning et al., 1994). Morphologically the oesophagus is similar in man and pig; both are omnivores and have a non-keratinised epithelium, submucous glands and similar membrane enzymes. Like in humans, pigs can suffer from reflux oesophagitis and stress ulceration of the oesophagus. The pig oesophagus may therefore be a good model for investigation compared to the human oesophagus (Christie et al., 1995) subset: major_organ subset: organ_slim subset: uberon_slim subset: vertebrate_core synonym: "gullet" EXACT [] synonym: "oesophagus" EXACT [] xref: AAO:0000145 xref: ANISEED:1235301 xref: BTO:0000959 xref: EFO:0000835 xref: EHDAA:2937 xref: EHDAA2:0001285 xref: EMAPA:16833 xref: EMAPA:18860 xref: EV:0100069 xref: FBbt:00005381 xref: FMA:7131 xref: GAID:291 xref: galen:Esophagus xref: MA:0000352 xref: MAT:0000048 xref: MESH:A.03.365 xref: MIAA:0000048 xref: ncithesaurus:Esophagus xref: OG:0000450 xref: OpenCyc:Mx4rvVj9Q5wpEbGdrcN5Y29ycA xref: SCTID:181245004 xref: TAO:0000204 xref: XAO:0000127 xref: ZFA:0000204 is_a: UBERON:0000062 ! organ is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004921 ! subdivision of digestive tract is_a: UBERON:0005178 ! implied link automatically realized ! thoracic cavity organ relationship: develops_from UBERON:0009143 ! esophageal region relationship: part_of UBERON:0001007 ! digestive system relationship: part_of UBERON:0001041 ! foregut relationship: part_of UBERON:0002224 ! thoracic cavity [Term] id: UBERON:0001044 name: salivary gland alt_id: UBERON:FBbt_00005382-FMA_9597-MA_0000346-MIAA_0000079 def: "saliva-secreting exocrine glands of the oral cavity[GO]. The salivary glands in mammals are exocrine glands, glands with ducts, that produce saliva. They also secrete amylase, an enzyme that breaks down starch into maltose. In other organisms such as insects, salivary glands are often used to produce biologically important proteins like silk or glues, and fly salivary glands contain polytene chromosomes that have been useful in genetic research[WP]." [GO:0007431, Wikipedia:Salivary_gland] comment: currently we define saliva and salivary glands very generally in functional terms but it may be more appropriate to split this class. From WP: In most vertebrates, saliva does not contain any enzymes, consisting of mucus and water only, and its primary function is to moisten food while eating. As a result, true salivary glands are rarely found in fish or aquatic tetrapods, although there are often individual mucus-secreting cells. Amphibians have a single salivary gland, the intermaxillary gland, located in the forward part of the palate. Reptiles and birds normally have only very small glands on the lips, palate, and base of the mouth, although there are some birds with large glands, which produce a sticky saliva that helps in nest-building. The distinct parotid, submandibular, and sublingual glands are only developed in mammals.[3] The salivary glands of some species, however, are modified to produce enzymes; salivary amylase is found in many, but by no means all, bird and mammal species (including humans, as noted above). Furthermore, the venom glands of poisonous snakes, Gila monsters, and some shrews, are modified salivary glands subset: functional_classification subset: organ_slim subset: uberon_slim synonym: "oral gland" RELATED [] xref: BTO:0001203 xref: EFO:0000859 xref: EHDAA:7987 xref: EHDAA2:0001775 xref: EMAPA:17751 xref: EV:0100059 xref: FBbt:00005382 xref: FMA:9597 xref: GAID:937 xref: galen:SalivaryGland xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/51/Illu_quiz_hn_02.jpg/200px-Illu_quiz_hn_02.jpg xref: MA:0000346 xref: MAT:0000079 xref: MESH:A.10.336.779 xref: MIAA:0000079 xref: ncithesaurus:Salivary_Gland xref: OG:0000376 xref: OpenCyc:Mx4rvVjl5ZwpEbGdrcN5Y29ycA xref: SCTID:181236000 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0002530 ! gland is_a: UBERON:0003293 ! implied link automatically realized ! gland of oral region is_a: UBERON:0003294 ! implied link automatically realized ! gland of foregut relationship: secretes UBERON:0001836 intersection_of: UBERON:0002530 ! gland intersection_of: secretes UBERON:0001836 ! saliva relationship: part_of UBERON:0000166 ! oral opening relationship: part_of UBERON:0000167 ! oral cavity relationship: part_of UBERON:0001041 ! foregut [Term] id: UBERON:0001045 name: midgut alt_id: UBERON:FBbt_00005383-FMA_45617-MA_0001564-XAO_0000103 def: "Middle subdivision of a digestive tract[CJM]. In vertebrates: The middle part of the alimentary canal from the stomach, or entrance of the bile duct, to, or including, the large intestine[GO]. In humans: originates from the foregut at the opening of the bile duct into the duodenum and continues through the small intestine and much of the large intestine until the transition to the hindgut about two-thirds of the way through the transverse colon. That part of the alimentary canal which lies between the gizzard and the hind intestine." [GO:0007494, Wikipedia:Midgut] comment: Note we define this generically to include invertebrates, but the class may be split in future. subset: developmental_classification subset: uberon_slim xref: BILA:0000086 xref: BTO:0000863 xref: EFO:0001950 xref: EHDAA:983 xref: EHDAA2:0001185 xref: EMAPA:16255 xref: FBbt:00005383 xref: FMA:45617 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3d/Illu_small_intestine.jpg/200px-Illu_small_intestine.jpg xref: MA:0001564 xref: ncithesaurus:Midgut xref: OG:0000290 xref: SCTID:361410004 xref: TGMA:0001036 xref: XAO:0000103 is_a: UBERON:0004921 ! subdivision of digestive tract [Term] id: UBERON:0001046 name: hindgut alt_id: UBERON:FBbt_00005384-FMA_45618-MA_0001527-XAO_0000104 def: "Posterior subdivision of a digestive tract[CJM]." [Wikipedia:Hindgut] comment: Note we define this generically to include invertebrates, but the class may be split in future. subset: developmental_classification subset: uberon_slim xref: AAO:0011052 xref: BILA:0000087 xref: BTO:0000510 xref: EHDAA:975 xref: EHDAA2:0000779 xref: EMAPA:16715 xref: FBbt:00005384 xref: FMA:45618 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f7/Gray472.png/200px-Gray472.png xref: MA:0001527 xref: ncithesaurus:Hindgut xref: OG:0000459 xref: SCTID:362856002 xref: TGMA:0001020 xref: XAO:0000104 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004921 ! subdivision of digestive tract relationship: develops_from UBERON:0003104 {source="Wikipedia"} ! mesenchyme [Term] id: UBERON:0001047 name: neural glomerulus alt_id: UBERON:FBbt_00005386 def: "Roundish subunit structure of synaptic neuropil, often ensheathed by glial lamellae and reflecting the terminal arborization domain(s) of one or more neurons[FBbt]. Large synaptic bouton found in areas like olfactory bulb, cerebellar cortex and thalamus, that contacts many post-synaptic targets[NIF]." [http://ccdb.ucsd.edu/SAO/images/glomerulus_sw_512x512.jpg, http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html] comment: isa or partof neuropil? TODO. Add to GO? subset: uberon_slim synonym: "glomerulus" BROAD [] xref: FBbt:00005386 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray1130.svg/200px-Gray1130.svg.png xref: ncithesaurus:Glomerulus xref: NIF_Subcellular:sao587858733 is_a: UBERON:0002606 ! neuropil disjoint_from: UBERON:0000074 ! renal glomerulus [Term] id: UBERON:0001048 name: primordium alt_id: UBERON:FBbt_00005495-FMA_86589-XAO_0003043 def: "Primordia are populations of contiguous cells that are morphologically distinct and already correspond in extent to a later organ/tissue[FBbt]. An embryonic structure that is the rudiment or commencement of a part or organ." [BTO:0001886, FB:DJS, FB:FBrf0089570, FB:FBrf0178740, Wikipedia:Primordium] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "bud" RELATED [] synonym: "placode" RELATED [FBbt:00005495] synonym: "rudiment" RELATED [] xref: AEO:0000171 xref: BTO:0001886 xref: EFO:0001652 xref: EHDAA2:0003171 xref: FBbt:00005495 xref: FMA:86589 xref: MAT:0000482 xref: ncithesaurus:Primordium xref: XAO:0003043 is_a: UBERON:0005423 {source="EHDAA2"} ! developing anatomical structure [Term] id: UBERON:0001049 name: neural tube alt_id: UBERON:FBbt_00005554-MIAA_0000069-ZFA_0001135 def: "In the developing vertebrate, the neural tube is the embryo's precursor to the central nervous system, which comprises the brain and spinal cord. The neural groove gradually deepens as the neural folds become elevated, and ultimately the folds meet and coalesce in the middle line and convert the groove into a closed tube, the neural tube or neural canal (which strictly speaking is the center of the neural tube), the ectodermal wall of which forms the rudiment of the nervous system. [WP,unvetted]." [Wikipedia:Neural_tube] comment: The mature structure of the neural tube exists when the tube has been segmented into the forebrain, midbrain, hindbrain and spinal cord regions. In addition neural crest has budded away from the epithelium[GO:0021915] subset: uberon_slim subset: vertebrate_core synonym: "presumptive central nervous system" RELATED [] xref: AAO:0010617 xref: BTO:0001057 xref: EHDAA:2869 xref: EHDAA:908 xref: EHDAA2:0001255 xref: EMAPA:16164 xref: EMAPA:16530 xref: EMAPA:16757 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray19_with_color.png/200px-Gray19_with_color.png xref: MAT:0000069 xref: MIAA:0000069 xref: ncithesaurus:Neural_Tube xref: OG:0000307 xref: SCTID:362852000 xref: TAO:0001135 xref: XAO:0003204 xref: ZFA:0001135 is_a: UBERON:0000025 ! tube is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system is_a: UBERON:0002050 ! implied link automatically realized ! embryonic structure is_a: UBERON:0005423 ! developing anatomical structure relationship: develops_from UBERON:0002346 ! neural ectoderm relationship: develops_from UBERON:0005068 ! neural rod relationship: develops_into UBERON:0001017 ! central nervous system relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0001016 {source="GO"} ! nervous system [Term] id: UBERON:0001050 name: atrium alt_id: UBERON:FBbt_00005615-FMA_85574-ZFA_0000471 def: "Anatomical chamber. Examples: right atrium of heart, atrium of middle nasal meatus, atrium of tympanic cavity, atrium of alveolus." [FMA:85574] comment: obsoleted because 'atrium' as a general grouping class that encompasses the cardiac atrium and atrium of alveolus atrium is of questionable value. Furthermore, the use of the term 'atrium' in the generic sense is misleading, as this is commonly used to refer specifically to the cardiac atrium xref: FMA:85574 is_obsolete: true consider: UBERON:0002081 [Term] id: UBERON:0001051 name: hypopharynx alt_id: UBERON:FBbt_00005751-FMA_54880-MA_0001796 def: "Bottom part of the pharynx, and is the part of the throat that connects to the esophagus." [Wikipedia:Hypopharynx] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "laryngeal pharynx" EXACT [FMA:54877] synonym: "laryngopharynx" EXACT [FMA:54877] synonym: "pars laryngea pharyngis" RELATED [BTO:0001740] xref: BTO:0001740 xref: EFO:0001388 xref: EHDAA2:0004574 xref: EV:0100068 xref: FMA:54880 xref: GAID:338 xref: MA:0001796 xref: MESH:A.03.867.490 xref: ncithesaurus:Hypopharynx xref: OG:0000445 xref: OpenCyc:Mx4rvq5O0JwpEbGdrcN5Y29ycA xref: SCTID:281490009 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001042 ! chordate pharynx [Term] id: UBERON:0001052 name: rectum alt_id: UBERON:FBbt_00005756-FMA_14544-MA_0000336-MIAA_0000050-WBbt_0005773-XAO_0000238 def: "the final straight portion of the large intestine in some mammals, and the gut in others, terminating in the anus[WP]." [BTO:0001158, Wikipedia:Rectum] comment: In the lungfish, sharks and rays the rectum opens into the cloaca which also receives wastes (urine) from the kidneys and material from the reproductive organs. In bony fish the rectum reaches the outside environment through the anus, which is normally situated just in front the urinary and reproductive openings. However in some fish the digestive tract may be curled back on itself, and in the Electric Eel (Electrophorus electricus) the anus is situated in the fish's throat. subset: uberon_slim synonym: "intestinum rectum" RELATED [BTO:0001158] synonym: "rectal sac" RELATED [] xref: AAO:0010401 xref: BTO:0001158 xref: EFO:0000848 xref: EHDAA:5836 xref: EHDAA2:0001592 xref: EMAPA:17896 xref: EMAPA:18925 xref: EV:0100081 xref: FMA:14544 xref: GAID:311 xref: galen:Rectum xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/75/Anorectum.gif/200px-Anorectum.gif xref: MA:0000336 xref: MAT:0000050 xref: MESH:A.03.492.411.495.767 xref: MIAA:0000050 xref: ncithesaurus:Rectum xref: OG:0000427 xref: OpenCyc:Mx4rvVjaU5wpEbGdrcN5Y29ycA xref: SCTID:181261002 xref: WBbt:0005773 xref: XAO:0000238 is_a: UBERON:0000063 ! organ segment is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure relationship: continuous_with UBERON:0001159 ! sigmoid colon relationship: continuous_with UBERON:0001245 ! anus relationship: develops_from UBERON:0001046 {source="Wikipedia"} ! hindgut relationship: part_of UBERON:0000059 {source="MA"} ! large intestine relationship: part_of UBERON:0004907 {source="FMA"} ! lower digestive tract relationship: part_of UBERON:0005409 {source="FMA"} ! gastrointestinal system [Term] id: UBERON:0001053 name: neurohemal organ alt_id: UBERON:FBbt_00005757-MIAA_0000212 comment: This class was created automatically from a combination of ontologies subset: organ_slim synonym: "neurohaemal organ" RELATED [] xref: BTO:0002106 xref: EFO:0000864 xref: FBbt:00005757 xref: MAT:0000212 xref: MIAA:0000212 is_a: UBERON:0000062 ! organ is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0001054 name: Malpighian tubule alt_id: UBERON:FBbt_00005786-MIAA_0000123 def: "The most important structure of the insect's excretory organ, which may comprise cystiform or labyrinthine highly versatile tubules having their outlet into the inital section of the rectum[FBbt]. Any of a group of long blind vessels opening into the posterior part of the alimentary canal in most insects and some other arthropods and functioning primarily as excretory organs[BTO]." [ISBN:3110148986, Wikipedia:Malpighian_tubule] comment: Editor note: this will be ceded to the Arthropod Anatomy Ontology subset: uberon_slim synonym: "Malphigian tube" RELATED [BTO:0000810] synonym: "tuba Malpighii" RELATED [BTO:0000810] xref: BTO:0000810 xref: EFO:0000243 xref: FBbt:00001896 xref: FBbt:00005786 xref: GAID:1228 xref: MAT:0000123 xref: MESH:A.13.574 xref: MIAA:0000123 xref: SCTID:41055008 xref: TADS:0000163 xref: TGMA:0001038 is_a: UBERON:0009773 {source="GO"} ! renal tubule [Term] id: UBERON:0001055 name: ureter alt_id: UBERON:FBbt_00005793-FMA_19667-FMA_9704-MA_0000378-MA_0000379-MIAA_0000120-MIAA_0000121-WBbt_0004540-WBbt_0005777-XAO_0000144-XAO_0000153 def: "the tube that conducts the urine from the renal pelvis to the bladder." [MP:0000534] is_obsolete: true consider: UBERON:0000056 consider: UBERON:0000057 [Term] id: UBERON:0001056 name: corpus cardiacum alt_id: UBERON:FBbt_00005799-MIAA_0000211 comment: This class was created automatically from a combination of ontologies synonym: "corpora cardiaca" RELATED [BTO:0000432] xref: BTO:0000432 xref: EFO:0000380 xref: FBbt:00005799 xref: MAT:0000211 xref: MIAA:0000211 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0000949 ! endocrine system [Term] id: UBERON:0001057 name: corpus allatum alt_id: UBERON:FBbt_00005800-MIAA_0000210 def: "A neurosecretory organ forming part of the retrocerebral complex." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html] comment: todo - move to arthropod ontology subset: uberon_slim synonym: "corpora allata" RELATED [BTO:0000291] xref: BTO:0000291 xref: EFO:0000379 xref: FBbt:00005800 xref: MAT:0000210 xref: MESH:A.08.713.100 xref: MIAA:0000210 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0000949 ! endocrine system [Term] id: UBERON:0001058 name: mushroom body alt_id: UBERON:FBbt_00005801-MIAA_0000336 def: "Paired neuropils, thought to be crucial to olfactory associative learning and memory. Mushroom body neuropils are divided into calyces, pedunculus, and its subsequent lobes. In Drosophila these are the alpha, beta, and gamma lobes." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html, Wikipedia:Mushroom_body] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: BTO:0002675 xref: EFO:0000925 xref: FBbt:00005801 xref: GAID:1231 xref: MAT:0000336 xref: MESH:A.13.641 xref: MIAA:0000336 is_a: UBERON:0000045 ! ganglion is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain is_a: UBERON:0003339 ! implied link automatically realized ! ganglion of central nervous system relationship: part_of UBERON:0000955 ! brain [Term] id: UBERON:0001059 name: pars intercerebralis alt_id: UBERON:FBbt_00005802-MIAA_0000337 def: "a neurosecretory center of the insect brain, located along the anterior midline[wiktionary]. A medial cleft or depression dividing the left and right protocerebrum and containing numerous large and small somata of neurosecretory and neuromodulatory neurons[FBbt]." [http://en.wiktionary.org/wiki/pars_intercerebralis, http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: EFO:0000926 xref: FBbt:00005802 xref: MAT:0000337 xref: MIAA:0000337 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001017 ! central nervous system [Term] id: UBERON:0001062 name: anatomical entity alt_id: UBERON:FBbt_root_00000000-FMA_62955 def: "Biological entity, which constitutes the structural organization of a biological organism, or is an attribute of that organization. Examples: cell, heart, head, peritoneal cavity, apex of lung, anatomical term, sagittal plane." [CARO:MAH, FMA:62955] subset: upper_level xref: AEO:0000000 xref: BILA:0000000 xref: CARO:0000000 xref: EHDAA2:0002229 xref: FBbt_root:00000000 xref: FMA:62955 xref: HAO:0000000 xref: NIF_GrossAnatomy:birnlex_6 xref: TAO:0100000 xref: TGMA:0001822 xref: ZFA:0100000 [Term] id: UBERON:0001063 name: flocculus alt_id: UBERON:Flocculus-MA_0000992 def: "a small lobe of the cerebellum at the posterior border of the middle cerebellar peduncle anterior to the biventer lobule[WP]." [Wikipedia:Flocculus_(cerebellar)] comment: Note that flocculus is an exact label for two distinct classes in NIF subset: uberon_slim synonym: "hemispheric lobule X" RELATED INCONSISTENT [NIF_GrossAnatomy:nlx_anat_20081213] xref: ABA:FL xref: FMA:83881 xref: MA:0000992 xref: NIF_GrossAnatomy:birnlex_1329 xref: SCTID:30711003 is_a: UBERON:0002749 ! regional part of cerebellar cortex relationship: part_of UBERON:0002245 ! hemisphere of cerebellum relationship: spatially_disjoint_from UBERON:0005347 {source="ABA"} ! copula pyramidis relationship: spatially_disjoint_from UBERON:0005348 {source="ABA"} ! ansiform lobule relationship: spatially_disjoint_from UBERON:0005349 {source="ABA"} ! paramedian lobule relationship: spatially_disjoint_from UBERON:0005350 {source="ABA"} ! lobule simplex relationship: spatially_disjoint_from UBERON:0005351 {source="ABA"} ! paraflocculus [Term] id: UBERON:0001064 name: main pancreatic duct alt_id: UBERON:0005627 alt_id: UBERON:FMA_10419-MA_0000124-ZFA_0001372 def: "a duct joining the pancreas to the common bile duct to supply pancreatic juices which aid in digestion provided by the exocrine pancreas. The pancreatic duct joins the common bile duct just prior to the ampulla of Vater, after which both ducts perforate the medial side of the second portion of the duodenum at the major duodenal papilla." [Wikipedia:Pancreatic_duct] subset: uberon_slim synonym: "canal of Wirsung" RELATED [BTO:0002362] synonym: "chief pancreatic duct" EXACT [FMA:16003] synonym: "duct of Wirsung" EXACT [Wikipedia:Pancreatic_duct] synonym: "hepaticopancreatic duct" RELATED [BTO:0002362] synonym: "pancreatic duct" BROAD [MESH:A.03.734.667] synonym: "ventral pancreatic duct" EXACT [MA:0000126] xref: BTO:0002362 xref: EHDAA:6905 xref: EHDAA2:0002177 xref: EMAPA:17510 xref: EMAPA:18821 xref: FMA:16003 xref: GAID:337 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/15/Gray1100.png/200px-Gray1100.png xref: MA:0000126 xref: MESH:A.03.734.667 xref: ncithesaurus:Pancreatic_Duct xref: OG:0000256 xref: SCTID:245385001 is_a: UBERON:0007329 {source="FMA"} ! pancreatic duct relationship: continuous_with UBERON:0001174 ! common bile duct relationship: develops_from UBERON:0003924 ! ventral pancreatic bud relationship: part_of UBERON:0000017 ! exocrine pancreas [Term] id: UBERON:0001065 name: parotid duct alt_id: UBERON:FMA_10420-MA_0002697 def: "The parotid duct, also known as Stensen's duct, is the route that saliva takes from the parotid gland into the mouth. It passes through the buccal fat, buccopharyngeal fascia, and buccinator muscle then opens into the vestibule of the mouth opposite the upper second molar tooth. The buccinator acts as a valve that prevents inflation of the duct during blowing. Running along with the duct superiorly is the transverse facial artery and upper buccal nerve; running along with the duct inferiorly is the lower buccal nerve. [WP,unvetted]." [Wikipedia:Parotid_duct] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "duct of parotid" EXACT [OBOL:automatic] synonym: "duct of parotid gland" EXACT [] synonym: "parotid gland duct" EXACT [OBOL:automatic] synonym: "stenon duct" EXACT [] synonym: "Stensen's duct" EXACT [] synonym: "Stensens's duct" EXACT [] xref: BTO:0004554 xref: FMA:10420 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a1/Gray1023.png/200px-Gray1023.png xref: MA:0002697 xref: ncithesaurus:Parotid_Duct xref: SCTID:362175009 is_a: UBERON:0001837 ! duct of salivary gland relationship: part_of UBERON:0001831 intersection_of: UBERON:0000058 ! duct intersection_of: part_of UBERON:0001831 ! parotid gland relationship: part_of UBERON:0001831 ! parotid gland [Term] id: UBERON:0001066 name: intervertebral disk alt_id: UBERON:FMA_10446-MA_0000110 def: "cartiliginous organ that lies between adjacent vertebrae in the spine. Each disc forms a cartilaginous joint to allow slight movement of the vertebrae, and acts as a ligament to hold the vertebrae together[WP]." [Wikipedia:Intervertebral_disk] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "discus intervertebralis" EXACT [FMA:10446, FMA:TA] synonym: "intervertebral disc" EXACT [] synonym: "intervertebral fibrocartilage" RELATED [BTO:0003625] synonym: "spinal disc" EXACT [Wikipedia:Spinal_disc] synonym: "spinal disk" RELATED [BTO:0003625] xref: BTO:0003625 xref: EFO:0001370 xref: FMA:10446 xref: GAID:105 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/92/Gray301.png/200px-Gray301.png xref: MA:0000110 xref: MESH:A.02.165.410 xref: ncithesaurus:Intervertebral_Disc xref: OpenCyc:Mx4rv11AcpwpEbGdrcN5Y29ycA xref: SCTID:244570000 is_a: UBERON:0000062 ! organ is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0005174 ! implied link automatically realized ! back organ relationship: adjacent_to UBERON:0002412 ! vertebra relationship: part_of UBERON:0001468 ! intervertebral symphysis [Term] id: UBERON:0001067 name: vertebral arch joint alt_id: UBERON:FMA_10447-MA_0001513 def: "a synovial joint between the superior articular process of one vertebra and the inferior articular process of the vertebra directly above it. There are two facet joints in each spinal motion segment[WP]." [Wikipedia:Zygapophysial_joint] subset: uberon_slim synonym: "facet joint" EXACT [] synonym: "joint of vertebral arch" EXACT [] synonym: "joint of vertebral articular process" EXACT [] synonym: "zygapophyseal joint" EXACT [] synonym: "zygapophysial joint" EXACT [] xref: FMA:10447 xref: GAID:275 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d2/Gray90.png/200px-Gray90.png xref: MA:0001513 xref: MESH:A.02.835.583.979 xref: ncithesaurus:Facet_Joint xref: OpenCyc:Mx4rvorHEpwpEbGdrcN5Y29ycA xref: SCTID:89836005 is_a: UBERON:0002217 ! synovial joint is_a: UBERON:0005174 ! implied link automatically realized ! back organ relationship: adjacent_to UBERON:0001079 ! superior articular process of vertebra relationship: adjacent_to UBERON:0001080 ! inferior articular process of vertebra relationship: part_of UBERON:0003861 ! vertebral arch [Term] id: UBERON:0001068 name: skin of back alt_id: UBERON:FMA_10462-MA_0000498 def: "A zone of skin that is part of a back [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "back skin" EXACT [] synonym: "back zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of back" EXACT [OBOL:automatic] xref: FMA:10462 xref: FMA:22985 xref: MA:0000498 xref: SCTID:181492002 is_a: UBERON:0001085 ! skin of trunk relationship: part_of UBERON:0001137 intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0001137 ! back relationship: part_of UBERON:0001137 ! back [Term] id: UBERON:0001069 name: head of pancreas alt_id: UBERON:FMA_10468-MA_0000122 def: "The head of pancreas is a portion of the pancreas that is lodged within the curve of the duodenum, and is flattened anteriorly (from before). The other parts of the pancreas are the body and the tail. Its upper border is overlapped by the superior part of the duodenum and its lower overlaps the horizontal part; its right and left borders overlap in front, and insinuate themselves behind, the descending and ascending parts of the duodenum respectively. [WP,unvetted]." [Wikipedia:Head_of_pancreas] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "pancreas head" EXACT [] synonym: "pancreatic head" EXACT [] synonym: "right extremity of pancreas" EXACT [] xref: EHDAA2:0001374 xref: EMAPA:17507 xref: EMAPA:18820 xref: FMA:10468 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Illu_pancreas_duodenum.jpg/200px-Illu_pancreas_duodenum.jpg xref: MA:0000122 xref: ncithesaurus:Head_of_the_Pancreas xref: OG:0000448 xref: SCTID:362201006 is_a: UBERON:0000064 ! organ part is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0001264 ! pancreas [Term] id: UBERON:0001070 name: external carotid artery alt_id: UBERON:FMA_10635-MA_0001929-XAO_0000345-ZFA_0005022 def: "The opercular artery arises from the hyoid stump on the first aortic arch, then follows the lateral margin of the operculum (gill covering) ventrally to reconnect into the proximal part of the first aortic arch. Isogai et al. 2001." [Wikipedia:External_carotid_artery, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "opercular artery" EXACT [] synonym: "ORA" RELATED [] xref: AAO:0010416 xref: BTO:0004696 xref: EFO:0001953 xref: EHDAA2:0000461 xref: EMAPA:18611 xref: FMA:10635 xref: GAID:480 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/13/External_carotid_a.gif/200px-External_carotid_a.gif xref: MA:0001929 xref: MESH:A.07.231.114.186.200.210 xref: ncithesaurus:External_Carotid_Artery xref: OG:0000265 xref: OpenCyc:Mx4rwVJkPZwpEbGdrcN5Y29ycA xref: SCTID:362044002 xref: TAO:0005022 xref: XAO:0000345 xref: ZFA:0005022 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0005396 ! carotid artery is_a: UBERON:0005911 ! implied link automatically realized ! endo-epithelium relationship: develops_from UBERON:0003118 ! aortic arch 1 [Term] id: UBERON:0001071 name: superficial cervical artery alt_id: UBERON:FMA_10665-MA_0002052 def: "." [Wikipedia:Superficial_cervical_artery] comment: The transverse cervical artery splits into two branches, a superficial one and a deep one[WP] subset: uberon_slim xref: FMA:10665 xref: MA:0002052 xref: ncithesaurus:Superficial_Cervical_Artery xref: SCTID:161746006 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001072 name: inferior vena cava alt_id: UBERON:FMA_10951-MA_0000480-XAO_0000388 def: "Trunk of systemic vein which is formed by the union of the right common iliac vein and the left common iliac vein and terminates in the right atrium." [Wikipedia:Inferior_vena_cava] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "posterior vena cava" EXACT [] synonym: "vena cava inferior" RELATED [BTO:0002682] xref: AAO:0011083 xref: BTO:0002682 xref: EHDAA2:0000611 xref: EMAPA:18416 xref: FMA:10951 xref: GAID:548 xref: galen:InferiorVenaCava xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4d/Gray577.png/200px-Gray577.png xref: MA:0000480 xref: MESH:A.07.231.908.949.648 xref: ncithesaurus:Inferior_Vena_Cava xref: OG:0001194 xref: SCTID:181369003 xref: XAO:0000388 is_a: UBERON:0004087 ! vena cava relationship: develops_from UBERON:0005487 {source="Wikipedia:Vitelline_vein"} ! vitelline vein [Term] id: UBERON:0001073 name: ileocecal junction alt_id: UBERON:FMA_11338-MA_0000332 comment: This class was created automatically from a combination of ontologies synonym: "ileocaecal junction" EXACT [] xref: FMA:11338 xref: MA:0000332 xref: SCTID:264021000 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: part_of UBERON:0000160 ! intestine [Term] id: UBERON:0001074 name: pericardial cavity alt_id: UBERON:FMA_11350-MA_0000053 def: "Cavity of serous sac surrounded by serous pericardium.[FMA]" [FMA:FMA, Wikipedia:Pericardial_cavity] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "cavity of pericardial sac" EXACT [] xref: EHDAA2:0001434 xref: EMAPA:18447 xref: EMAPA:18448 xref: FMA:11350 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray968.png/200px-Gray968.png xref: MA:0000053 xref: ncithesaurus:Pericardial_Cavity xref: OG:0000556 xref: SCTID:362027001 xref: ZFA:0001655 is_a: UBERON:0002323 ! body cavity relationship: develops_from UBERON:0003887 {source="Wikipedia"} ! intraembryonic coelom relationship: part_of UBERON:0002406 ! pericardial sac [Term] id: UBERON:0001075 name: body of vertebra alt_id: UBERON:FMA_11945-MA_0001457 def: "The body is the largest part of a vertebra, and is more or less cylindrical in shape. Its upper and lower surfaces are flattened and rough, and give attachment to the intervertebral fibrocartilages, and each presents a rim around its circumference. In front, the body is convex from side to side and concave from above downward. Behind, it is flat from above downward and slightly concave from side to side. Its anterior surface presents a few small apertures, for the passage of nutrient vessels. On the posterior surface is a single large, irregular aperture, or occasionally more than one, for the exit of the basi-vertebral veins from the body of the vertebra. [WP,unvetted]." [Wikipedia:Body_of_vertebra] comment: todo - add subclasses: acoelus, amphicoelus, procoelus, opsithocoelus, heterocoelus; pleurocentrum, intercentrum; todo: add developmental relationships subset: uberon_slim subset: vertebrate_core synonym: "autocentrum" EXACT [ZFA:0000126] synonym: "centrum" EXACT [] synonym: "centrum of vertebra" EXACT [] synonym: "corpus vertebrae" RELATED [Wikipedia:Body_of_vertebra] synonym: "corpus vertebrae (vertebrale)" EXACT [FMA:11945] synonym: "vertebral body" EXACT [FMA:11945] synonym: "vertebral centrum" EXACT [MA:0001457] xref: AAO:0000697 xref: FMA:11945 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/63/Corpusvertebrae.png/200px-Corpusvertebrae.png xref: MA:0001457 xref: ncithesaurus:Vertebral_Body xref: OpenCyc:Mx4rvXU4VpwpEbGdrcN5Y29ycA xref: SCTID:361745008 xref: SCTID:362867001 xref: ZFA:0000126 is_a: UBERON:0004765 ! skeletal element is_a: UBERON:0005174 ! implied link automatically realized ! back organ relationship: part_of UBERON:0002412 ! vertebra [Term] id: UBERON:0001076 name: spinous process of vertebra alt_id: UBERON:FMA_11948-MA_0001455 def: "The spinous process of a vertebra is directed backward and downward from the junction of the laminae (in humans), and serves for the attachment of muscles and ligaments. In animals without an erect stance, the process points upward and may slant forward or backward. Spinous processes are exaggerated in some animals, such as the extinct Dimetrodon and Spinosaurus, where they form a sail- or finback. [WP,unvetted]." [Wikipedia:Processus_spinosus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "neural spine" RELATED [] synonym: "processus spinosus" EXACT [] synonym: "vertebra spinous process" EXACT [] xref: AAO:0000705 xref: EMAPA:25107 xref: FMA:11948 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/48/Processusspinosusvertebrae.png/200px-Processusspinosusvertebrae.png xref: MA:0001455 xref: SCTID:264259004 xref: ZFA:0001336 is_a: UBERON:0006061 ! process of vertebra relationship: part_of UBERON:0003861 ! vertebral arch [Term] id: UBERON:0001077 name: transverse process of vertebra alt_id: UBERON:FMA_11949-MA_0001456 def: "The transverse or costal processes of a vertebra, two in number, project one at either side from the point where the lamina joins the pedicle, between the superior and inferior articular processes. They serve for the attachment of muscles and ligaments. [WP,unvetted]." [Wikipedia:Processus_transversus] subset: uberon_slim synonym: "processus transversus" EXACT [] synonym: "transverse process" EXACT [] synonym: "vertebra transverse process" EXACT [] xref: FMA:11949 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a1/Processustransversusvertebrae.PNG/200px-Processustransversusvertebrae.PNG xref: MA:0001456 xref: SCTID:264238006 is_a: UBERON:0006061 ! process of vertebra [Term] id: UBERON:0001078 name: pedicle of vertebra alt_id: UBERON:FMA_11950-MA_0001458 def: "The pedicles are two short, thick processes, which project backward, one on either side, from the upper part of the body, at the junction of its posterior and lateral surfaces. They connect the body of the spinal vertebra to the arch. [WP,unvetted]." [Wikipedia:Pedicle_of_vertebral_arch] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "pedicle of vertebral arch" EXACT [] synonym: "pediculus arcus vertebrae" EXACT [FMA:11950, FMA:TA] synonym: "vertebral pedicle" EXACT [] xref: FMA:11950 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d0/Pediculusarcusvertebrae.png/200px-Pediculusarcusvertebrae.png xref: MA:0001458 xref: OpenCyc:Mx4rvYdjdJwpEbGdrcN5Y29ycA xref: SCTID:277422007 is_a: UBERON:0000063 ! organ segment is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0002412 ! vertebra [Term] id: UBERON:0001079 name: superior articular process of vertebra alt_id: UBERON:FMA_11953-MA_0001452 def: "Paired processes at the cephalic end of the neural arch. The articular facets of the prezygapophyses face dorsomedially and articulate with the lateroventrally facing facets of the postzygapophyses of the preceding vertebra." [AAO:Pugener_and_Maglia_2008] comment: TODO - add distinct classes for hemal vs neural? subset: vertebrate_core synonym: "cranial articular process of vertebra" EXACT [] synonym: "neural prezygapophysis" EXACT [ZFA:0001325] synonym: "neural prezygopophyses" EXACT [ZFA:0001325] synonym: "prezygapophysis" EXACT [] synonym: "processus articularis superior" EXACT [] synonym: "vertebra cranial articular process" EXACT [] xref: AAO:0000703 xref: FMA:11953 xref: http://www.informatics.jax.org/cookbook/figures/figure20.shtml xref: MA:0001452 xref: SCTID:42424006 xref: ZFA:0001325 is_a: UBERON:0006062 ! articular process of vertebra [Term] id: UBERON:0001080 name: inferior articular process of vertebra alt_id: UBERON:FMA_11954-MA_0001451 def: "Paired processes at the caudal end of the neural arch. The articular facets of the postzygapophyses face lateroventrally and articulate with the dorsomedially facing facets of the prezygapophyses of the succeeding vertebra." [AAO:LAP] comment: TODO - add distinct classes for hemal vs neural? subset: vertebrate_core synonym: "caudal articular process of vertebra" EXACT [] synonym: "neural postzygapophysis" NARROW [ZFA:0000681] synonym: "neural postzygopophysis" EXACT [ZFA:0000681] synonym: "postzygapophysis" EXACT [] synonym: "processus articularis inferior" EXACT [] synonym: "processus obliquus posterior" RELATED [AAO:0000702] synonym: "vertebra caudal articular process" EXACT [] xref: AAO:0000702 xref: FMA:11954 xref: MA:0001451 xref: SCTID:30079000 xref: ZFA:0000681 is_a: UBERON:0006062 ! articular process of vertebra [Term] id: UBERON:0001081 name: endocardium of ventricle alt_id: UBERON:FMA_12148-MA_0000079-ZFA_0001615 def: "Endocardium that is part of the cardiac ventricle." [ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: vertebrate_core synonym: "cardiac ventricle endocardium" EXACT [OBOL:automatic] synonym: "endocardium of cardiac ventricle" EXACT [OBOL:automatic] synonym: "endocardium of heart ventricle" EXACT [OBOL:automatic] synonym: "endocardium of lower chamber of heart" EXACT [OBOL:automatic] synonym: "endocardium of ventricle of heart" EXACT [OBOL:automatic] synonym: "heart ventricle endocardium" EXACT [OBOL:automatic] synonym: "lower chamber of heart endocardium" EXACT [OBOL:automatic] synonym: "ventricle endocardium" EXACT [] synonym: "ventricle of heart endocardium" EXACT [OBOL:automatic] synonym: "ventricular endocardium" EXACT [] xref: FMA:12148 xref: MA:0000079 xref: OG:0000607 xref: SCTID:192172004 xref: ZFA:0001615 is_a: UBERON:0002165 ! endocardium relationship: part_of UBERON:0002082 intersection_of: UBERON:0002165 ! endocardium intersection_of: part_of UBERON:0002082 ! cardiac ventricle relationship: part_of UBERON:0002082 ! cardiac ventricle [Term] id: UBERON:0001082 name: epicardium of ventricle alt_id: UBERON:FMA_12150-ZFA_0005058 def: "The external layer of the ventricle bounding the ventricular myocardium. It is formed by a single layer of mesothelial cells supported by a basal lamina, and imbricated with collagen, fibroblasts, and vascular structures in the subepicardial space. Hu et al. 2001.." [ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: vertebrate_core synonym: "cardiac ventricle epicardium" EXACT [OBOL:automatic] synonym: "cardiac ventricle heart epicardium" EXACT [OBOL:automatic] synonym: "cardiac ventricle visceral serous pericardium of heart" EXACT [OBOL:automatic] synonym: "epicardium of cardiac ventricle" EXACT [OBOL:automatic] synonym: "epicardium of heart ventricle" EXACT [OBOL:automatic] synonym: "epicardium of lower chamber of heart" EXACT [OBOL:automatic] synonym: "epicardium of ventricle of heart" EXACT [OBOL:automatic] synonym: "heart epicardium of cardiac ventricle" EXACT [OBOL:automatic] synonym: "heart epicardium of heart ventricle" EXACT [OBOL:automatic] synonym: "heart epicardium of lower chamber of heart" EXACT [OBOL:automatic] synonym: "heart epicardium of ventricle of heart" EXACT [OBOL:automatic] synonym: "heart ventricle epicardium" EXACT [OBOL:automatic] synonym: "heart ventricle heart epicardium" EXACT [OBOL:automatic] synonym: "heart ventricle visceral serous pericardium of heart" EXACT [OBOL:automatic] synonym: "lower chamber of heart epicardium" EXACT [OBOL:automatic] synonym: "lower chamber of heart heart epicardium" EXACT [OBOL:automatic] synonym: "lower chamber of heart visceral serous pericardium of heart" EXACT [OBOL:automatic] synonym: "ventricle of heart epicardium" EXACT [OBOL:automatic] synonym: "ventricle of heart heart epicardium" EXACT [OBOL:automatic] synonym: "ventricle of heart visceral serous pericardium of heart" EXACT [OBOL:automatic] synonym: "ventricular epicardium" EXACT [] synonym: "visceral serous pericardium of heart of cardiac ventricle" EXACT [OBOL:automatic] synonym: "visceral serous pericardium of heart of heart ventricle" EXACT [OBOL:automatic] synonym: "visceral serous pericardium of heart of lower chamber of heart" EXACT [OBOL:automatic] synonym: "visceral serous pericardium of heart of ventricle of heart" EXACT [OBOL:automatic] xref: FMA:12150 xref: TAO:0005058 xref: ZFA:0005058 is_a: UBERON:0002348 ! epicardium relationship: part_of UBERON:0002082 intersection_of: UBERON:0002348 ! epicardium intersection_of: part_of UBERON:0002082 ! cardiac ventricle relationship: part_of UBERON:0002082 ! cardiac ventricle [Term] id: UBERON:0001083 name: myocardium of ventricle alt_id: UBERON:FMA_12151-MA_0000082-ZFA_0005061 def: "Muscular layer of the cardiac ventricle composed of a compact myocardial layer surrounding the trabecular layer." [ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: vertebrate_core synonym: "cardiac muscle of cardiac ventricle" EXACT [OBOL:automatic] synonym: "cardiac muscle of heart ventricle" EXACT [OBOL:automatic] synonym: "cardiac muscle of lower chamber of heart" EXACT [OBOL:automatic] synonym: "cardiac muscle of ventricle of heart" EXACT [OBOL:automatic] synonym: "cardiac ventricle cardiac muscle" EXACT [OBOL:automatic] synonym: "cardiac ventricle heart muscle" EXACT [OBOL:automatic] synonym: "cardiac ventricle heart myocardium" EXACT [OBOL:automatic] synonym: "cardiac ventricle muscle of heart" EXACT [OBOL:automatic] synonym: "cardiac ventricle myocardium" EXACT [OBOL:automatic] synonym: "heart muscle of cardiac ventricle" EXACT [OBOL:automatic] synonym: "heart muscle of heart ventricle" EXACT [OBOL:automatic] synonym: "heart muscle of lower chamber of heart" EXACT [OBOL:automatic] synonym: "heart muscle of ventricle of heart" EXACT [OBOL:automatic] synonym: "heart myocardium of cardiac ventricle" EXACT [OBOL:automatic] synonym: "heart myocardium of heart ventricle" EXACT [OBOL:automatic] synonym: "heart myocardium of lower chamber of heart" EXACT [OBOL:automatic] synonym: "heart myocardium of ventricle of heart" EXACT [OBOL:automatic] synonym: "heart ventricle cardiac muscle" EXACT [OBOL:automatic] synonym: "heart ventricle heart muscle" EXACT [OBOL:automatic] synonym: "heart ventricle heart myocardium" EXACT [OBOL:automatic] synonym: "heart ventricle muscle of heart" EXACT [OBOL:automatic] synonym: "heart ventricle myocardium" EXACT [OBOL:automatic] synonym: "lower chamber of heart cardiac muscle" EXACT [OBOL:automatic] synonym: "lower chamber of heart heart muscle" EXACT [OBOL:automatic] synonym: "lower chamber of heart heart myocardium" EXACT [OBOL:automatic] synonym: "lower chamber of heart muscle of heart" EXACT [OBOL:automatic] synonym: "lower chamber of heart myocardium" EXACT [OBOL:automatic] synonym: "muscle of heart of cardiac ventricle" EXACT [OBOL:automatic] synonym: "muscle of heart of heart ventricle" EXACT [OBOL:automatic] synonym: "muscle of heart of lower chamber of heart" EXACT [OBOL:automatic] synonym: "muscle of heart of ventricle of heart" EXACT [OBOL:automatic] synonym: "myocardium of cardiac ventricle" EXACT [OBOL:automatic] synonym: "myocardium of heart ventricle" EXACT [OBOL:automatic] synonym: "myocardium of lower chamber of heart" EXACT [OBOL:automatic] synonym: "myocardium of ventricle of heart" EXACT [OBOL:automatic] synonym: "ventricle myocardium" EXACT [] synonym: "ventricle of heart cardiac muscle" EXACT [OBOL:automatic] synonym: "ventricle of heart heart muscle" EXACT [OBOL:automatic] synonym: "ventricle of heart heart myocardium" EXACT [OBOL:automatic] synonym: "ventricle of heart muscle of heart" EXACT [OBOL:automatic] synonym: "ventricle of heart myocardium" EXACT [OBOL:automatic] synonym: "ventricular myocardium" EXACT [] xref: EFO:0003088 xref: FMA:12151 xref: MA:0000082 xref: OG:0000604 xref: SCTID:192084000 xref: TAO:0005061 xref: ZFA:0005061 is_a: UBERON:0002349 ! implied link automatically realized ! myocardium relationship: part_of UBERON:0002082 intersection_of: UBERON:0002349 ! myocardium intersection_of: part_of UBERON:0002082 ! cardiac ventricle relationship: part_of UBERON:0002082 ! cardiac ventricle [Term] id: UBERON:0001084 name: skin of head alt_id: UBERON:FMA_12166-MA_0000582 def: "A zone of skin that is part of a head [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "adult head zone of skin" EXACT [OBOL:automatic] synonym: "head skin" EXACT [] synonym: "head zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of adult head" EXACT [OBOL:automatic] synonym: "zone of skin of head" EXACT [OBOL:automatic] xref: FMA:12166 xref: FMA:24756 xref: MA:0000582 xref: ncithesaurus:Head_Skin xref: SCTID:181484006 is_a: UBERON:0000014 ! zone of skin relationship: part_of UBERON:0000033 intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0000033 ! head [Term] id: UBERON:0001085 name: skin of trunk alt_id: UBERON:FMA_12167-MA_0000517 def: "A zone of skin that is part of a trunk [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "torso zone of skin" EXACT [OBOL:automatic] synonym: "trunk skin" EXACT [] synonym: "trunk zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of torso" EXACT [OBOL:automatic] synonym: "zone of skin of trunk" EXACT [OBOL:automatic] xref: FMA:12167 xref: FMA:23093 xref: MA:0000517 xref: ncithesaurus:Skin_of_the_Trunk xref: SCTID:181489001 is_a: UBERON:0000014 ! zone of skin relationship: part_of UBERON:0002100 intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0002100 ! trunk [Term] id: UBERON:0001086 name: articular cartilage alt_id: UBERON:FMA_12264-MA_0000487-ZFA_0001644 def: "the bones of a synovial joint are covered by this layer of hyaline cartilage that lines the epiphyses of joint end of bone with a smooth, slippery surface that does not bind them together; articular cartilage functions to absorb shock and reduce friction during movement." [Wikipedia:Synovial_joint#Structure] subset: uberon_slim subset: vertebrate_core synonym: "cartilago articularis" EXACT [] xref: BTO:0001572 xref: EFO:0001902 xref: FMA:12264 xref: GAID:101 xref: galen:ArticularCartilage xref: MA:0000487 xref: MESH:A.02.165.165 xref: ncithesaurus:Articular_Cartilage xref: SCTID:305026006 xref: TAO:0001670 xref: ZFA:0001644 is_a: UBERON:0001994 {source="MA"} ! hyaline cartilage relationship: part_of UBERON:0000982 {source="BTO"} ! skeletal joint relationship: part_of UBERON:0002217 {source="Wikipedia"} ! synovial joint [Term] id: UBERON:0001087 name: pleural fluid alt_id: UBERON:FMA_12273-MA_0002532 def: "Transudate contained in the pleural cavity.[FMA]" [FMA:FMA, Wikipedia:Pleural_fluid] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: BTO:0003080 xref: FMA:12273 xref: MA:0002532 xref: MAT:0000500 xref: ncithesaurus:Pleural_Fluid is_a: UBERON:0000463 ! implied link automatically realized ! portion of organism substance relationship: part_of UBERON:0002402 intersection_of: UBERON:0000463 ! portion of organism substance intersection_of: part_of UBERON:0002402 ! pleural cavity [Term] id: UBERON:0001088 name: urine alt_id: UBERON:FMA_12274-MA_0002545-MIAA_0000058 def: "Excretion in liquid state processed by the kidney.[FMA]" [FMA:FMA, Wikipedia:Urine] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: BTO:0001419 xref: EFO:0001939 xref: ENVO:00002047 xref: FMA:12274 xref: GAID:1189 xref: galen:Urine xref: MA:0002545 xref: MAT:0000058 xref: MESH:A.12.207.927 xref: MIAA:0000058 xref: ncithesaurus:Urine xref: OpenCyc:Mx4rvVjGppwpEbGdrcN5Y29ycA is_a: UBERON:0000174 ! excreta [Term] id: UBERON:0001089 name: sweat alt_id: UBERON:FMA_12275-MA_0002539 def: "Secretion produced by a sweat gland.[FMA]" [FMA:FMA, Wikipedia:Sweat] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "skin exudate" RELATED [BTO:0001254] xref: BTO:0001254 xref: ENVO:02000025 xref: FMA:12275 xref: GAID:1172 xref: MA:0002539 xref: MESH:A.12.200.849 xref: ncithesaurus:Sweat xref: OpenCyc:Mx4rvVjJtZwpEbGdrcN5Y29ycA is_a: UBERON:0000456 ! secretion [Term] id: UBERON:0001090 name: synovial fluid alt_id: UBERON:FMA_12277-MA_0002544 def: "Transudate contained in the synovial cavity of joints, and in the cavity of tendon sheaths and bursae.[FMA]" [FMA:FMA, Wikipedia:Synovial_fluid] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "joint fluid" EXACT [] xref: BTO:0001339 xref: ENVO:02000039 xref: FMA:12277 xref: GAID:265 xref: galen:SynovialFluid xref: MA:0002544 xref: MESH:A.02.835.583.443.800.800 xref: ncithesaurus:Synovial_Fluid xref: ZFA:0005154 is_a: UBERON:0000463 ! portion of organism substance relationship: part_of UBERON:0007617 ! synovial cavity of joint [Term] id: UBERON:0001091 name: calcareous tooth alt_id: UBERON:FMA_12516-MA_0000348-MIAA_0000041-XAO_0000431-ZFA_0000644-ZFA_0000694 def: "Organ with a cavity which consist of dentine surrounded by enamel. Examples: incisor, molar." [Wikipedia:Tooth, Wikipedia:Tooth_(animal), ZFIN:curator] subset: uberon_slim subset: vertebrate_core synonym: "ceratobranchial 5 tooth" NARROW [] synonym: "dentine containing tooth" EXACT [] synonym: "tooth" EXACT [] synonym: "vertebrate tooth" EXACT [] xref: AEO:0000220 xref: BTO:0000397 xref: EFO:0000839 xref: EHDAA:8009 xref: EHDAA:8045 xref: EHDAA2:0004605 xref: EMAPA:17917 xref: EMAPA:17938 xref: EV:0100063 xref: FMA:12516 xref: GAID:1260 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/14/Teeth_by_David_Shankbone.jpg/200px-Teeth_by_David_Shankbone.jpg xref: MA:0000348 xref: MAT:0000041 xref: MESH:A.14.254.860 xref: MIAA:0000041 xref: ncithesaurus:Tooth xref: OG:0000127 xref: OpenCyc:Mx4rvVjUEZwpEbGdrcN5Y29ycA xref: SCTID:302214001 xref: TAO:0000694 xref: XAO:0000431 xref: ZFA:0000694 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0003913 ! tooth-like structure relationship: develops_from UBERON:0000930 {source="XAO"} ! stomodeum relationship: develops_from UBERON:0005176 {source="ZFA"} ! tooth enamel organ relationship: has_part UBERON:0001751 ! dentine relationship: has_part UBERON:0001752 ! enamel relationship: part_of UBERON:0000165 ! mouth relationship: part_of UBERON:0000166 ! oral opening [Term] id: UBERON:0001092 name: first cervical vertebra alt_id: UBERON:FMA_12519-MA_0001421 def: "." [Wikipedia:Atlas_(anatomy)] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "atlas" EXACT [] synonym: "Atlas (CI)" EXACT [] synonym: "C1" BROAD [] synonym: "C1 vertebra" EXACT [] synonym: "cervical vertebra 1" EXACT [] xref: AAO:0000709 xref: EHDAA:10606 xref: FMA:12519 xref: GAID:236 xref: MA:0001421 xref: MESH:A.02.835.232.834.151.213 xref: ncithesaurus:C1_Vertebra xref: ZFA:0001167 is_a: UBERON:0002413 ! cervical vertebra relationship: anterior_to UBERON:0001093 ! second cervical vertebra [Term] id: UBERON:0001093 name: second cervical vertebra alt_id: UBERON:FMA_12520-MA_0001422-ZFA_0000092 def: "second cervical vertebra (C2) of the spine." [Wikipedia:Axis_(anatomy)] comment: note: not the same as ZFA term 'axis' subset: uberon_slim subset: vertebrate_core synonym: "axis" RELATED INCONSISTENT [MA:0001422] synonym: "axis (CII)" EXACT [] synonym: "C2" BROAD [] synonym: "C2 vertebra" EXACT [] synonym: "cervical axis" EXACT [MP:0004608] synonym: "cervical vertebra 2" EXACT [MA:0001422] synonym: "vertebra 2" EXACT [ZFA:0001168] xref: EHDAA:10608 xref: FMA:12520 xref: GAID:237 xref: MA:0001422 xref: MESH:A.02.835.232.834.151.383 xref: ncithesaurus:Axis xref: OpenCyc:Mx4rv-zaJJwpEbGdrcN5Y29ycA xref: ZFA:0001168 is_a: UBERON:0002413 ! cervical vertebra [Term] id: UBERON:0001094 name: sacral vertebra alt_id: UBERON:FMA_12526-XAO_0003078 def: "A vertebra that is part of a sacrum." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "sacral segment" EXACT [] synonym: "segment of sacrum" EXACT [] xref: EMAPA:18336 xref: FMA:12526 xref: galen:SacralVertebra xref: MA:0000313 xref: ncithesaurus:Sacral_Vertebra xref: OpenCyc:Mx4rv-ZsXpwpEbGdrcN5Y29ycA xref: SCTID:361773005 xref: XAO:0003078 is_a: UBERON:0002412 ! implied link automatically realized ! vertebra is_a: UBERON:0003828 ! implied link automatically realized ! abdominal segment bone is_a: UBERON:0005179 ! implied link automatically realized ! pelvis organ relationship: part_of UBERON:0006075 intersection_of: UBERON:0002412 ! vertebra intersection_of: part_of UBERON:0006075 ! sacral region of vertebral column [Term] id: UBERON:0001095 name: caudal vertebra alt_id: UBERON:FMA_12527-XAO_0003079-ZFA_0000326 def: "bones in the tails or coccyx of mammals. In zebrafish: Vertebra bearing a hemal arch and spine. The most posterior caudal vertebrae support the caudal fin and are referred to as preural vertebrae." [Wikipedia:Caudal_vertebra, ZFIN:curator] subset: uberon_slim subset: vertebrate_core synonym: "caudal vertebrae" EXACT PLURAL [] synonym: "tail vertebra" RELATED [MA:0000310] xref: EMAPA:18374 xref: MA:0000310 xref: OpenCyc:Mx4rv9IEzZwpEbGdrcN5Y29ycA xref: TAO:0000326 xref: XAO:0003079 xref: ZFA:0000326 is_a: UBERON:0002412 ! implied link automatically realized ! vertebra relationship: part_of UBERON:0006076 intersection_of: UBERON:0002412 ! vertebra intersection_of: part_of UBERON:0006076 ! caudal region of vertebral column [Term] id: UBERON:0001096 name: wall of esophagus alt_id: UBERON:FMA_12611-MA_0002691 def: "An anatomical wall that is part of a esophagus [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "anatomical wall of esophagus" EXACT [OBOL:automatic] synonym: "anatomical wall of gullet" EXACT [OBOL:automatic] synonym: "anatomical wall of oesophagus" EXACT [OBOL:automatic] synonym: "esophageal wall" EXACT [] synonym: "esophagus anatomical wall" EXACT [OBOL:automatic] synonym: "esophagus wall" EXACT [] synonym: "gullet anatomical wall" EXACT [OBOL:automatic] synonym: "gullet wall" EXACT [OBOL:automatic] synonym: "oesophagus anatomical wall" EXACT [OBOL:automatic] synonym: "oesophagus wall" EXACT [OBOL:automatic] synonym: "wall of gullet" EXACT [OBOL:automatic] synonym: "wall of oesophagus" EXACT [OBOL:automatic] xref: FMA:12611 xref: MA:0002691 is_a: UBERON:0000060 ! anatomical wall is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0001043 intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0001043 ! esophagus relationship: part_of UBERON:0001043 ! esophagus [Term] id: UBERON:0001097 name: axillary lymph node alt_id: UBERON:FMA_12771-MA_0000735 def: "The Axillary lymph nodes are of large size, vary from twenty to thirty in number, and may be arranged in the following groups: brachial lymph nodes (or 'lateral') pectoral axillary lymph nodes (or 'anterior') subscapular axillary lymph nodes (or 'posterior') central lymph nodes apical lymph nodes (or 'medial' or 'subclavicular') [WP,unvetted]." [Wikipedia:Axillary_lymph_node, Wikipedia:Axillary_lymph_nodes] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "axillary node" EXACT [] xref: FMA:12771 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/73/Gray607.png/200px-Gray607.png xref: MA:0000735 xref: ncithesaurus:Axillary_Lymph_Node xref: SCTID:181759007 is_a: UBERON:0003968 ! peripheral lymph node is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001467 ! shoulder [Term] id: UBERON:0001098 name: incisor tooth alt_id: UBERON:FMA_12823-MA_0000349 def: "Incisors are the first kind of tooth in heterodont mammals. They are located in the premaxilla above and mandible below. [WP,unvetted]." [Wikipedia:Incisor_tooth] comment: Humans normally have eight (8) incisors; Among other animals, some other primates, cats and horses have twelve. Rodents have four, while Foxes have nine. Rabbits and hares (lagomorphs) were once considered rodents, but are distinguished by having eight — one small pair, called 'peg teeth', is located directly behind the most anterior pair. Incisors are used to bite off tough foods, such as red meat subset: uberon_slim synonym: "incisor" EXACT [MA:0000349] xref: BTO:0001741 xref: EHDAA:8011 xref: EHDAA:8047 xref: FMA:12823 xref: GAID:1263 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4c/Gray997.png/200px-Gray997.png xref: MA:0000349 xref: MESH:A.14.254.860.425 xref: ncithesaurus:Incisor xref: OpenCyc:Mx4rwP1ch5wpEbGdrcN5Y29ycA xref: SCTID:420856006 is_a: UBERON:0001091 ! calcareous tooth relationship: part_of UBERON:0003672 ! dentition [Term] id: UBERON:0001099 name: subcostal vein alt_id: UBERON:FMA_12845-MA_0002222 def: "The subcostal vein is a vein in the human body that runs along the bottom of the twelfth rib. It has the same essential qualities as the posterior intercostal veins, except that it cannot be considered intercostal because it is not between two ribs. Each subcostal vein gives off a posterior (dorsal) branch which has a similar distribution to the posterior ramus of an intercostal artery. [WP,unvetted]." [Wikipedia:Subcostal_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:12845 xref: MA:0002222 xref: ncithesaurus:Subcostal_Vein xref: SCTID:25248001 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001100 name: pectoralis minor alt_id: UBERON:FMA_13109-MA_0002355 def: "The Pectoralis minor is a thin, triangular muscle, situated at the upper part of the chest, beneath the Pectoralis major. [WP,unvetted]." [Wikipedia:Pectoralis_minor] subset: organ_slim subset: uberon_slim synonym: "pectoralis minor muscle" EXACT [] xref: EHDAA:8313 xref: EHDAA2:0001425 xref: EMAPA:18180 xref: FMA:13109 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5d/Pectoralis_minor.png/200px-Pectoralis_minor.png xref: MA:0002355 xref: ncithesaurus:Pectoralis_Minor xref: OG:0000902 xref: SCTID:181625002 is_a: UBERON:0001495 ! pectoral muscle [Term] id: UBERON:0001101 name: external jugular vein alt_id: UBERON:FMA_13110-MA_0002156 def: "The external jugular vein receives the greater part of the blood from the exterior of the cranium and the deep parts of the face, being formed by the junction of the posterior division of the posterior facial with the posterior auricular vein. [WP,unvetted]." [Wikipedia:External_jugular_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "external jugular" EXACT [EHDAA2:0000468] synonym: "external jugular venous tree" EXACT [] xref: AAO:0010508 xref: EHDAA:9887 xref: EHDAA2:0000468 xref: EMAPA:17875 xref: FMA:13110 xref: galen:ExternalJugularVein xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray557.png/200px-Gray557.png xref: MA:0002156 xref: ncithesaurus:External_Jugular_Vein xref: OpenCyc:Mx4rvrm0c5wpEbGdrcN5Y29ycA xref: SCTID:181373000 xref: XAO:0000379 is_a: UBERON:0004711 ! jugular vein relationship: tributary_of UBERON:0001587 {source="FMA/obol"} ! subclavian vein [Term] id: UBERON:0001102 name: cartilage of main bronchus alt_id: UBERON:FMA_13117-MA_0001846 def: "A cartilage that is part of a main bronchus [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "bronchus principalis cartilage" EXACT [OBOL:automatic] synonym: "cartilage of bronchus principalis" EXACT [OBOL:automatic] synonym: "cartilage of primary bronchus" EXACT [OBOL:automatic] synonym: "cartilage of principal bronchus" EXACT [OBOL:automatic] synonym: "cartilaginous ring of main bronchus" EXACT [EMAPA:19092] synonym: "main bronchial cartilage" EXACT [] synonym: "main bronchus cartilage" EXACT [] synonym: "primary bronchus cartilage" EXACT [OBOL:automatic] synonym: "principal bronchus cartilage" EXACT [OBOL:automatic] xref: EMAPA:19092 xref: FMA:13117 xref: MA:0001846 is_a: UBERON:0001956 ! cartilage of bronchus is_a: UBERON:0003590 ! implied link automatically realized ! main bronchus connective tissue relationship: part_of UBERON:0002182 intersection_of: UBERON:0002418 ! cartilage tissue intersection_of: part_of UBERON:0002182 ! main bronchus relationship: part_of UBERON:0002182 ! main bronchus [Term] id: UBERON:0001103 name: diaphragm alt_id: UBERON:FMA_13295-MA_0001904 def: "The diaphragm is a skeletal muscle that is responsible for contraction and expansion of the lungs[GO]." [GO:0060539, Wikipedia:Thoracid_diaphragm] comment: The existence of some membrane separating the pharynx from the stomach can be traced widely among the chordates. Thus amphioxus possesses an atrium by which water exits the pharynx, which has been argued (and disputed) to be homologous to structures in ascidians and hagfishes.[3] The urochordate epicardium separates digestive organs from the pharynx and heart, but the anus returns to the upper compartment to discharge wastes through an outgoing siphon (Thoracic_diaphragm#Comparative_anatomy_and_evolution) subset: organ_slim subset: uberon_slim synonym: "diaphragm muscle" EXACT [BTO:0000341] synonym: "midriff" RELATED [BTO:0000341] synonym: "phren" RELATED [BTO:0000341] synonym: "thoracic diaphragm" EXACT [] xref: BTO:0000341 xref: EFO:0000937 xref: EHDAA2:0003495 xref: EMAPA:17701 xref: EV:0100376 xref: FMA:13295 xref: GAID:158 xref: MA:0001904 xref: MAT:0000502 xref: MESH:A.02.633.567.900.300 xref: ncithesaurus:Diaphragm xref: OG:0000713 xref: OpenCyc:Mx4rvVivz5wpEbGdrcN5Y29ycA xref: SCTID:181614006 is_a: UBERON:0001134 ! skeletal muscle tissue is_a: UBERON:0002426 ! chest muscle is_a: UBERON:0003831 ! implied link automatically realized ! respiratory system muscle is_a: UBERON:0003898 ! implied link automatically realized ! skeletal muscle of trunk is_a: UBERON:0004830 ! implied link automatically realized ! respiratory system skeletal muscle relationship: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0001104 name: anterior jugular vein alt_id: UBERON:FMA_13318-MA_0002155 def: "The anterior jugular vein begins near the hyoid bone by the confluence of several superficial veins from the submaxillary region. It descends between the median line and the anterior border of the Sternocleidomastoideus, and, at the lower part of the neck, passes beneath that muscle to open into the termination of the external jugular, or, in some instances, into the subclavian vein. It varies considerably in size, bearing usually an inverse proportion to the external jugular; most frequently there are two anterior jugulars, a right and left; but sometimes only one. Its tributaries are some laryngeal veins, and occasionally a small thyroid vein. Just above the sternum the two anterior jugular veins communicate by a transverse trunk, the venous jugular arch, which receive tributaries from the inferior thyroid veins; each also communicates with the internal jugular. There are no valves in this vein. [WP,unvetted]." [Wikipedia:Anterior_jugular_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "anterior external jugular vein" EXACT [] xref: FMA:13318 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f8/Gray558.png/200px-Gray558.png xref: MA:0002155 xref: ncithesaurus:Anterior_Jugular_Vein xref: SCTID:65478008 is_a: UBERON:0004711 ! jugular vein relationship: tributary_of UBERON:0001587 {source="FMA/obol"} ! subclavian vein [Term] id: UBERON:0001105 name: clavicle alt_id: UBERON:FMA_13321-MA_0001329 def: "In human anatomy, the clavicle or collar bone is classified as a flat bone that makes up part of the shoulder girdle. It receives its name from the Latin clavicula ('little key') because the bone rotates along its axis like a key when the shoulder is abducted. This movement is palpable. In some people, particularly females who may have less fat in this region, the location of the bone is clearly visible as it creates a bulge in the skin. [WP,unvetted]." [Wikipedia:Clavicle] comment: The clavicle first appears as part of the skeleton in primitive bony fish, where it is associated with the pectoral fin; they also have a bone called the cleithrum. In such fish, the paired clavicles run behind and below the gills on each side, and are joined by a solid symphysis on the fish's underside. They are, however, absent in cartilagenous fish and in the vast majority of living bony fish, including all of the teleosts[ISBN 0-03-910284-X] Note that FMA and MA differ in whether they consider this part of the shoulder subset: uberon_slim synonym: "collar bone" EXACT [] xref: AAO:0000761 xref: EMAPA:18721 xref: FMA:13321 xref: GAID:182 xref: galen:Clavicle xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/59/Pectoral_girdles-en.svg/200px-Pectoral_girdles-en.svg.png xref: MA:0001329 xref: MESH:A.02.835.232.087.227 xref: ncithesaurus:Clavicle xref: OG:0000849 xref: OpenCyc:Mx4rvVjijZwpEbGdrcN5Y29ycA xref: SCTID:181910004 is_a: UBERON:0002495 {source="FMA"} ! long bone is_a: UBERON:0003461 {source="MA"} ! shoulder bone is_a: UBERON:0003607 ! implied link automatically realized ! forelimb long bone is_a: UBERON:0007829 {source="MA"} ! pectoral girdle bone relationship: part_of UBERON:0001440 ! forelimb skeleton relationship: part_of UBERON:0001467 ! shoulder relationship: part_of UBERON:0007831 {source="FMA"} ! skeleton of pectoral girdle [Term] id: UBERON:0001106 name: cephalic vein alt_id: UBERON:FMA_13324-MA_0002092 def: "In human anatomy, the cephalic vein is a superficial vein of the upper limb. It is also called the antecubital vein. It communicates with the basilic vein via the median cubital vein at the elbow and is located in the superficial fascia along the anterolateral surface of the biceps brachii muscle. Superiorly the cephalic vein passes between the deltoid and pectoralis major muscles and through the deltopectoral triangle, where it empties into the axillary vein. It is often visible through the skin, and its location in the deltopectoral groove is fairly consistent, making this site a good candidate for cannulation. It is often referred to as the 'House-man's Friend' for this reason and is generally a good place for cannulaton when a large bore cannula needs to be sited. [WP,unvetted]." [Wikipedia:Cephalic_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "cephalic vein of forearm" EXACT [] synonym: "vena cephalica antebrachii" EXACT [FMA:13324, FMA:TA] xref: EMAPA:25075 xref: FMA:13324 xref: galen:CephalicVein xref: MA:0002092 xref: ncithesaurus:Cephalic_Vein xref: OpenCyc:Mx4rwTpbQZwpEbGdrcN5Y29ycA xref: SCTID:181391005 is_a: UBERON:0001638 ! vein is_a: UBERON:0003507 ! implied link automatically realized ! arm blood vessel relationship: part_of UBERON:0001460 ! arm relationship: tributary_of UBERON:0000985 {source="FMA/obol"} ! axillary vein relationship: tributary_of UBERON:0001587 {source="FMA/obol"} ! subclavian vein [Term] id: UBERON:0001107 name: sternohyoid alt_id: UBERON:FMA_13341-MA_0002383-ZFA_0000283 def: "The sternohyoid muscle is a thin, narrow muscle attaching the hyoid bone to the sternum, one of the paired strap muscles of the infrahyoid muscles serving to depress the hyoid bone. It is innervated by the ansa cervicalis. The muscle arises from the posterior border of the medial end of the clavicle, the posterior sternoclavicular ligament, and the upper and posterior part of the manubrium sterni. Passing upward and medially, it is inserted by short tendinous fibers into the lower border of the body of the hyoid bone. [WP,unvetted]." [Wikipedia:Sternohyoid] comment: todo - add taxon restriction subset: uberon_slim subset: vertebrate_core synonym: "sternohyoidei" RELATED [Wikipedia:Sternohyoid_muscle] synonym: "sternohyoideus" RELATED [Wikipedia:Sternohyoid_muscle] synonym: "sternohyoidoid muscle" RELATED [Wikipedia:Sternohyoid_muscle] xref: EMAPA:19271 xref: FMA:13341 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/67/Sternohyoid_muscle.PNG/200px-Sternohyoid_muscle.PNG xref: MA:0002383 xref: ncithesaurus:Sternohyoid is_a: UBERON:0008523 {source="FMA"} ! infrahyoid muscle [Term] id: UBERON:0001108 name: omohyoid alt_id: UBERON:FMA_13342-MA_0002348 def: "The omohyoid muscle is a muscle at the front of the neck that consists of two bellies separated by an intermediate tendon. It belongs to the group of infrahyoid muscles. [WP,unvetted]." [Wikipedia:Omohyoid] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:13342 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b0/Gray1210.png/200px-Gray1210.png xref: MA:0002348 xref: ncithesaurus:Omohyoid is_a: UBERON:0008523 {source="FMA"} ! infrahyoid muscle [Term] id: UBERON:0001109 name: sternothyroid alt_id: UBERON:FMA_13343-MA_0002386 def: "The Sternothyreoideus (or Sternothyroid muscle) is shorter and wider than the Sternohyoideus, beneath which it is situated. It arises from the posterior surface of the manubrium sterni, below the origin of the Sternohyoideus, and from the edge of the cartilage of the first rib, and sometimes that of the second rib, it is inserted into the oblique line on the lamina of the thyroid cartilage. This muscle is in close contact with its fellow at the lower part of the neck, but diverges somewhat as it ascends; it is occasionally traversed by a transverse or oblique tendinous inscription. [WP,unvetted]." [Wikipedia:Sternothyroid] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: EMAPA:19272 xref: FMA:13343 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/10/Sternothyroideus.png/200px-Sternothyroideus.png xref: MA:0002386 xref: ncithesaurus:Sternothyroid is_a: UBERON:0008523 {source="FMA"} ! infrahyoid muscle [Term] id: UBERON:0001110 name: thyrohyoid alt_id: UBERON:FMA_13344-MA_0002393 def: "The Thyrohyoid muscle is a small, quadrilateral muscle appearing like an upward continuation of the Sternothyreoideus. It belongs to the infrahyoid muscles group. It arises from the oblique line on the lamina of the thyroid cartilage, and is inserted into the lower border of the greater cornu of the hyoid bone. [WP,unvetted]." [Wikipedia:Thyrohyoid] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: EMAPA:19273 xref: EMAPA:25143 xref: FMA:13344 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/aa/Thyrohyoid_muscle.PNG/200px-Thyrohyoid_muscle.PNG xref: MA:0002393 xref: ncithesaurus:Thyrohyoid is_a: UBERON:0008523 {source="FMA"} ! infrahyoid muscle [Term] id: UBERON:0001111 name: intercostal muscle alt_id: UBERON:FMA_13354-MA_0002324 def: "Intercostal muscles are several groups of muscles that run between the ribs, and help form and move the chest wall. There are three principal layers; the external intercostal muscles, which aid in quiet and forced inhalation. They originate on ribs 1-11 and have their insertion on ribs 2-12. The external intercostals are responsible for the elevation of the ribs, and expanding the transverse dimensions of the thoracic cavity. Located around the ribs the internal intercostal muscles, which aid in forced expiration (quiet expiration is a passive process). They originate on ribs 2-12 and have their insertions on ribs 1-11. The internal intercostals are responsible for the depression of the ribs decreasing the transverse dimensions of the thoracic cavity. the innermost intercostal muscle, the deep layers of the internal intercostal muscles which are separated from them by the neurovascular bundle. Both the external and internal muscles are innervated by the intercostal nerves, and are provided by the intercostal arteries and intercostal veins. Their fibers run in opposite directions. [WP,unvetted]." [Wikipedia:Intercostal_muscle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "intercostales" EXACT [] xref: EFO:0001368 xref: EHDAA:5988 xref: EHDAA2:0000841 xref: FMA:13354 xref: GAID:159 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f2/Gray411.png/200px-Gray411.png xref: MA:0002324 xref: MESH:A.02.633.567.900.500 xref: ncithesaurus:Intercostal_Muscle xref: OG:0000903 xref: OpenCyc:Mx4rwQo8QJwpEbGdrcN5Y29ycA xref: SCTID:181746004 is_a: UBERON:0002426 ! chest muscle [Term] id: UBERON:0001112 name: latissimus dorsi alt_id: UBERON:FMA_13357-MA_0002331 def: "The latissimus dorsi is the larger, flat, dorso-lateral muscle on the trunk, posterior to the arm, and partly covered by the trapezius on its median dorsal region. [WP,unvetted]." [Wikipedia:Latissimus_dorsi] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: EFO:0003067 xref: EHDAA:8307 xref: EHDAA2:0000932 xref: EMAPA:18178 xref: FMA:13357 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Latissimus_dorsi.png/200px-Latissimus_dorsi.png xref: MA:0002331 xref: OG:0000930 is_a: UBERON:0001482 ! muscle of shoulder [Term] id: UBERON:0001113 name: lobe of liver alt_id: UBERON:FMA_13361-MA_0000360 def: "Traditional gross anatomy divided the liver into four lobes based on surface features. The falciform ligament is visible on the front (anterior side) of the liver. This divides the liver into a left anatomical lobe, and a right anatomical lobe." [Wikipedia:Liver#Lobes] comment: editor note: some work needs to be done to ensure the child terms of this class have correct isa/partof placement. in MA they are subclasses, in FMA they are parts synonym: "hepatic lobe" EXACT [] synonym: "liver lobe" EXACT [] synonym: "lobus hepatis" EXACT [] xref: EMAPA:18306 xref: FMA:13361 xref: MA:0000360 xref: ncithesaurus:Liver_Lobe xref: SCTID:245378000 is_a: UBERON:0000064 ! organ part is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0002107 ! liver [Term] id: UBERON:0001114 name: right lobe of liver alt_id: UBERON:FMA_13362-MA_0000363 def: "The right lobe is much larger than the left; the proportion between them being as six to one. It occupies the right hypochondrium, and is separated from the left lobe on its upper surface by the falciform ligament; on its under and posterior surfaces by the left sagittal fossa; and in front by the umbilical notch. It is of a somewhat quadrilateral form, its under and posterior surfaces being marked by three fossæ: the porta and the fossæ for the gall-bladder and inferior vena cava, which separate its left part into two smaller lobes; the quadrate and caudate lobes. [WP,unvetted]." [Wikipedia:Right_lobe_of_liver] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "gall bladder lobe" RELATED SENSU [ZFA:0005173] synonym: "liver right lobe" EXACT [] synonym: "right liver lobe" EXACT [ZFA:0005173] xref: EHDAA:4001 xref: EHDAA2:0001008 xref: EMAPA:18311 xref: FMA:13362 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a3/Gray1087-liver.png/200px-Gray1087-liver.png xref: MA:0000363 xref: ncithesaurus:Right_Lobe_of_the_Liver xref: OG:0001424 xref: SCTID:362182008 xref: ZFA:0005173 is_a: UBERON:0001113 ! lobe of liver [Term] id: UBERON:0001115 name: left lobe of liver alt_id: UBERON:FMA_13363-MA_0000361 def: "The left lobe is smaller and more flattened than the right. It is situated in the epigastric and left hypochondriac regions. Its upper surface is slightly convex and is moulded on to the diaphragm; its under surface presents the gastric impression and omental tuberosity. [WP,unvetted]." [Wikipedia:Left_lobe_of_liver] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "left liver lobe" EXACT [] synonym: "liver left lobe" EXACT [] xref: EHDAA:3995 xref: EHDAA2:0001000 xref: EMAPA:18307 xref: FMA:13363 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a3/Gray1087-liver.png/200px-Gray1087-liver.png xref: MA:0000361 xref: ncithesaurus:Left_Lobe_of_the_Liver xref: OG:0001423 xref: SCTID:362183003 xref: ZFA:0005172 is_a: UBERON:0001113 ! lobe of liver [Term] id: UBERON:0001116 name: quadrate lobe of liver alt_id: UBERON:FMA_13364-MA_0000365 def: "The quadrate lobe is an area of the liver situated on the under surface of the right lobe, bounded in front by the anterior margin of the liver; behind by the porta hepatis; on the right, by the fossa for the gall-bladder; and on the left, by the fossa for the umbilical vein. It is oblong in shape, its antero-posterior diameter being greater than its transverse. [WP,unvetted]." [Wikipedia:Quadrate_lobe_of_liver] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "liver quadrate lobe" EXACT [] synonym: "lobus quadratus" EXACT [] xref: EHDAA:8082 xref: EHDAA2:0001012 xref: EMAPA:18318 xref: FMA:13364 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a3/Gray1087-liver.png/200px-Gray1087-liver.png xref: MA:0000365 xref: ncithesaurus:Lobus_Quadratus xref: OG:0000509 xref: SCTID:279929003 is_a: UBERON:0001114 ! right lobe of liver [Term] id: UBERON:0001117 name: caudate lobe of liver alt_id: UBERON:FMA_13365-MA_0000364 def: "The caudate lobe (posterior hepatic segment I, Spigelian lobe) is situated upon the postero-superior surface of the liver on the right lobe of the liver, opposite the tenth and eleventh thoracic vertebrae. It is bounded on the left side by the physiological division of the liver called the ligamentum venosum. It is bounded, below, by the porta; on the right, by the fossa for the inferior vena cava; and, on the left, by the fossa for the ductus venosus. It looks backward, being nearly vertical in position; it is longer from above downward than from side to side, and is somewhat concave in the transverse direction. The caudate process is a small elevation of the hepatic substance extending obliquely and laterally, from the lower extremity of the caudate lobe to the under surface of the right lobe. It is situated behind the porta, and separates the fossa for the gall-bladder from the commencement of the fossa for the inferior vena cava. Budd-Chiari syndrome, caused by occlusion of hepatic venous outflow, can lead to hypertrophy of the caudate lobe due to its own caval anastomosis that allows for continued function of this lobe of the liver. [WP,unvetted]." [Wikipedia:Caudate_lobe_of_liver] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "couinaud hepatic segment i" EXACT [FMA:13365] synonym: "hepatovenous segment i" EXACT [] synonym: "liver caudate lobe" EXACT [] synonym: "liver caudate process" RELATED [] synonym: "lobus caudatus" EXACT [] synonym: "pars posterior hepatis" EXACT [FMA:13365, FMA:TA] synonym: "posterior hepatic segment i" EXACT [] synonym: "posterior liver" EXACT [] synonym: "posterior part of liver" EXACT [] synonym: "segment i of liver" EXACT [] synonym: "segmentum hepatis i" EXACT [FMA:13365, FMA:TA] synonym: "spiegelian lobe" EXACT [] synonym: "spigel lobe" EXACT [] xref: EHDAA:6990 xref: EHDAA2:0001005 xref: EMAPA:18313 xref: FMA:13365 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a3/Gray1087-liver.png/200px-Gray1087-liver.png xref: MA:0000364 xref: ncithesaurus:Lobus_Caudatus xref: OG:0000508 xref: SCTID:362184009 is_a: UBERON:0001114 ! right lobe of liver [Term] id: UBERON:0001118 name: lobe of thyroid gland alt_id: UBERON:FMA_13367-MA_0000131 def: "The lobes of the thyroid gland are conical in shape, the apex of each being directed upward and lateralward as far as the junction of the middle with the lower third of the thyroid cartilage; the base looks downward, and is on a level with the fifth or sixth tracheal ring. Each lobe is about 5 cm. long; its greatest width is about 3 cm. , and its thickness about 2 cm. The lateral or superficial surface is convex, and covered by the skin, the superficial and deep fasciæ, the Sternocleidomastoideus, the superior belly of the Omohyoideus, the Sternohyoideus and Sternothyreoideus, and beneath the last muscle by the pretracheal layer of the deep fascia, which forms a capsule for the gland. The deep or medial surface is moulded over the underlying structures, viz. , the thyroid and cricoid cartilages, the trachea, the Constrictor pharyngis inferior and posterior part of the Cricothyreoideus, the esophagus (particularly on the left side of the neck), the superior and inferior thyroid arteries, and the recurrent nerves. The anterior border is thin, and inclines obliquely from above downward toward the middle line of the neck, while the posterior border is thick and overlaps the common carotid artery, and, as a rule, the parathyroids. [WP,unvetted]." [Wikipedia:Lobes_of_thyroid_gland] comment: This class was created automatically from a combination of ontologies synonym: "lobus (glandula thyroidea)" EXACT [] synonym: "thyroid gland lobe" EXACT [] synonym: "thyroid lobe" EXACT [] xref: EHDAA2:0002032 xref: EMAPA:18196 xref: EMAPA:18830 xref: FMA:13367 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9e/Gray1174.png/200px-Gray1174.png xref: MA:0000131 xref: ncithesaurus:Thyroid_Gland_Lobe xref: OG:0000732 xref: SCTID:245537001 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: part_of UBERON:0002046 ! thyroid gland [Term] id: UBERON:0001119 name: right lobe of thyroid gland alt_id: UBERON:FMA_13368-MA_0000729 comment: This class was created automatically from a combination of ontologies synonym: "lobus dexter (glandula thyroidea)" EXACT [] synonym: "right thyroid lobe" EXACT [] synonym: "thyroid gland right lobe" EXACT [] xref: EHDAA2:0001759 xref: FMA:13368 xref: MA:0000729 xref: ncithesaurus:Right_Thyroid_Gland_Lobe xref: OG:0000733 xref: SCTID:170482008 is_a: UBERON:0001118 ! implied link automatically realized ! lobe of thyroid gland relationship: in_right_side_of UBERON:0002046 intersection_of: UBERON:0001118 ! lobe of thyroid gland intersection_of: in_right_side_of UBERON:0002046 ! thyroid gland [Term] id: UBERON:0001120 name: left lobe of thyroid gland alt_id: UBERON:FMA_13369-MA_0000728 comment: This class was created automatically from a combination of ontologies synonym: "left thyroid lobe" EXACT [] synonym: "lobus sinister (glandula thyroidea)" EXACT [] synonym: "thyroid gland left lobe" EXACT [] xref: EHDAA2:0000965 xref: FMA:13369 xref: MA:0000728 xref: ncithesaurus:Left_Thyroid_Gland_Lobe xref: OG:0000734 xref: SCTID:170784008 is_a: UBERON:0001118 ! implied link automatically realized ! lobe of thyroid gland relationship: in_left_side_of UBERON:0002046 intersection_of: UBERON:0001118 ! lobe of thyroid gland intersection_of: in_left_side_of UBERON:0002046 ! thyroid gland [Term] id: UBERON:0001121 name: longus colli alt_id: UBERON:FMA_13370-MA_0002341 def: "The Longus colli muscle is a muscle of the human body. The Longus colli is situated on the anterior surface of the vertebral column, between the atlas and the third thoracic vertebra. It is broad in the middle, narrow and pointed at either end, and consists of three portions, a superior oblique, an inferior oblique, and a vertical. The superior oblique portion arises from the anterior tubercles of the transverse processes of the third, fourth, and fifth cervical vertebræ and, ascending obliquely with a medial inclination, is inserted by a narrow tendon into the tubercle on the anterior arch of the atlas. The inferior oblique portion, the smallest part of the muscle, arises from the front of the bodies of the first two or three thoracic vertebræ; and, ascending obliquely in a lateral direction, is inserted into the anterior tubercles of the transverse processes of the fifth and sixth cervical vertebræ. The vertical portion arises, below, from the front of the bodies of the upper three thoracic and lower three cervical vertebræ, and is inserted into the front of the bodies of the second, third, and fourth cervical vertebræ. [WP,unvetted]." [Wikipedia:Longus_colli] comment: This class was created automatically from a combination of ontologies subset: organ_slim subset: uberon_slim synonym: "longi colli" RELATED [Wikipedia:Longus_colli_muscle] synonym: "longus colli muscle" EXACT [Wikipedia:Longus_colli_muscle] xref: FMA:13370 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a6/Longus_colli.png/200px-Longus_colli.png xref: MA:0002341 xref: ncithesaurus:Longus_Colli xref: SCTID:244836009 is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0003830 ! implied link automatically realized ! thoracic segment muscle is_a: UBERON:0005178 ! implied link automatically realized ! thoracic cavity organ relationship: part_of UBERON:0008818 {source="FMA"} ! superior mediastinum [Term] id: UBERON:0001122 name: scalenus medius alt_id: UBERON:FMA_13386-MA_0002370 def: "The Scalenus medius, the largest and longest of the three scalene muscles, arises from the posterior tubercles of the transverse processes of the lower six cervical vertebræ. It descendes along the side of the vertebral column to insert by a broad attachment into the upper surface of the first rib, between the tubercle and the subclavian groove. The brachial plexus and the subclavian artery pass anterior to it. Because it elevates the upper ribs, the middle scalene muscle is also one of the accessory muscles of respiration. [WP,unvetted]." [Wikipedia:Scalenus_medius] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "medial scalene muscle" EXACT [] synonym: "middle scalene" EXACT [] synonym: "musculus scalenus medius" EXACT [FMA:13386, FMA:TA] xref: FMA:13386 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fa/Scalenus_medius.png/200px-Scalenus_medius.png xref: MA:0002370 xref: ncithesaurus:Scalenus_Medius is_a: UBERON:0002377 ! muscle of neck [Term] id: UBERON:0001123 name: scalenus posterior alt_id: UBERON:FMA_13387-MA_0002369 def: "The Scalenus posterior (Scalenus posticus), the smallest and most deeply seated of the three Scaleni, arises, by two or three separate tendons, from the posterior tubercles of the transverse processes of the lower two or three cervical vertebræ, and is inserted by a thin tendon into the outer surface of the second rib, behind the attachment of the Serratus anterior. It is occasionally blended with the Scalenus medius. [WP,unvetted]." [Wikipedia:Scalenus_posterior] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "musculus scalenus posterior" EXACT [FMA:13387, FMA:TA] synonym: "posterior scalene" EXACT [] synonym: "posterior scalene muscle" EXACT [] synonym: "scalenus dorsalis" EXACT [] xref: FMA:13387 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f3/Scalenus_posterior.png/200px-Scalenus_posterior.png xref: MA:0002369 xref: ncithesaurus:Scalenus_Dorsalis is_a: UBERON:0002377 ! muscle of neck [Term] id: UBERON:0001124 name: tetrapod scapula alt_id: UBERON:FMA_13394-MA_0001330-ZFA_0000583 def: "In human anatomy, the scapula, omo (Medical Latin), or shoulder blade, is the bone that connects the humerus (arm bone) with the clavicle (collar bone). The scapula forms the posterior (back) located part of the shoulder girdle. In humans, it is a flat bone, roughly triangular in shape, placed on a posterolateral aspect of the thoracic cage. [WP,unvetted]." [Wikipedia:Scapula] comment: present in all tetrapods with even vestiges of anterior limbs, e.g., turtles & birds & mammals subset: uberon_slim synonym: "scapula bone" RELATED [BTO:0001218] synonym: "shoulder blade" EXACT [] xref: AAO:0000751 xref: BTO:0001218 xref: EFO:0001400 xref: EMAPA:18722 xref: FMA:13394 xref: GAID:186 xref: galen:Scapula xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/59/Pectoral_girdles-en.svg/200px-Pectoral_girdles-en.svg.png xref: MA:0001330 xref: ncithesaurus:Scapula xref: OG:0001398 xref: OpenCyc:Mx4rvVji0JwpEbGdrcN5Y29ycA is_a: UBERON:0003461 ! implied link automatically realized ! shoulder bone is_a: UBERON:0006849 ! scapula relationship: part_of UBERON:0001440 {source="OG"} ! forelimb skeleton relationship: part_of UBERON:0001467 {source="FMA"} ! shoulder [Term] id: UBERON:0001125 name: serratus anterior alt_id: UBERON:FMA_13397-MA_0002378 def: "The serratus anterior is a muscle that originates on the surface of the upper eight or nine ribs at the side of the chest and inserts along the entire anterior length of the medial border of the scapula. [WP,unvetted]." [Wikipedia:Serratus_anterior] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Boxer's muscle" EXACT [] synonym: "serratus anterior muscle" EXACT [] synonym: "serratus ventralis" EXACT [] xref: EHDAA:9463 xref: EHDAA2:0001832 xref: EMAPA:18525 xref: FMA:13397 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c6/Serratus_anterior.png/200px-Serratus_anterior.png xref: MA:0002378 xref: ncithesaurus:Serratus_Ventralis xref: OG:0000679 xref: OpenCyc:Mx4rvWn_D5wpEbGdrcN5Y29ycA xref: SCTID:181748003 is_a: UBERON:0001482 ! muscle of shoulder [Term] id: UBERON:0001126 name: serratus posterior superior alt_id: UBERON:FMA_13401-MA_0002377 def: "The Serratus posterior superior is a thin, quadrilateral muscle, situated at the upper and back part of the thorax. It arises by a thin and broad aponeurosis from the lower part of the ligamentum nuchae, from the spinous processes of the seventh cervical and upper two or three thoracic vertebræ and from the supraspinal ligament. Inclining downward and lateralward it becomes muscular, and is inserted, by four fleshy digitations, into the upper borders of the second, third, fourth, and fifth ribs, a little beyond their angles. [WP,unvetted]." [Wikipedia:Serratus_posterior_superior] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "serratus dorsalis cranialis" EXACT [] synonym: "superior serratus posterior" EXACT [] xref: FMA:13401 xref: MA:0002377 xref: ncithesaurus:Serratus_Dorsalis_Cranialis xref: SCTID:244935007 is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0001127 name: serratus posterior inferior alt_id: UBERON:FMA_13402-MA_0002376 def: "The Serratus posterior inferior muscle (or posterior serratus) is a muscle of the human body. [WP,unvetted]." [Wikipedia:Serratus_posterior_inferior] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "inferior serratus posterior" EXACT [] synonym: "serratus dorsalis caudalis" EXACT [] xref: FMA:13402 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/aa/Serratus_posterior.PNG/200px-Serratus_posterior.PNG xref: MA:0002376 xref: ncithesaurus:Serratus_Dorsalis_Caudalis xref: SCTID:244936008 is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0001128 name: sternocleidomastoid alt_id: UBERON:FMA_13407-MA_0002384 def: "In human anatomy, the sternocleidomastoid muscle, also known as sternomastoid and commonly abbreviated as SCM, is a paired muscle in the superficial layers of the anterior portion of the neck. It acts to flex and rotate the head. It also acts as an accessory muscle of inspiration, along with the scalene muscles of the neck. [WP,unvetted]." [Wikipedia:Sternocleidomastoid] subset: uberon_slim synonym: "sternocleidomastoid muscle" EXACT [BTO:0005125] synonym: "sternomastoid" EXACT [] xref: BTO:0005125 xref: EMAPA:25137 xref: FMA:13407 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/61/Gray512.png/200px-Gray512.png xref: MA:0002384 xref: ncithesaurus:Sternocleidomastoid_Muscle xref: OG:0000853 xref: OpenCyc:Mx4rv2bMg5wpEbGdrcN5Y29ycA xref: SCTID:181741009 is_a: UBERON:0002377 ! muscle of neck [Term] id: UBERON:0001129 name: subscapularis alt_id: UBERON:FMA_13413-MA_0002388 def: "The Subscapularis is a large triangular muscle which fills the subscapular fossa and inserts into the lesser tubercle of the humerus and the front of the capsule of the shoulder-joint. [WP,unvetted]." [Wikipedia:Subscapularis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "subscapularis muscle" EXACT [] xref: EHDAA:8317 xref: EHDAA2:0001943 xref: EMAPA:18181 xref: FMA:13413 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f2/Gray411.png/200px-Gray411.png xref: MA:0002388 xref: ncithesaurus:Subscapularis xref: OG:0000850 xref: OpenCyc:Mx4rviCRIJwpEbGdrcN5Y29ycA xref: SCTID:277446000 is_a: UBERON:0001482 ! muscle of shoulder [Term] id: UBERON:0001130 name: vertebral column alt_id: UBERON:FMA_13478-MA_0002416-XAO_0003074-ZFA_0001559 def: "." [Wikipedia:Vertebral_column] subset: uberon_slim subset: vertebrate_core synonym: "backbone" NARROW [FMA:13478] synonym: "columna vertebralis" RELATED [BTO:0000818] synonym: "dorsal spine" RELATED [BTO:0000818] synonym: "spinal column" RELATED [MESH:A.02.835.232.834] synonym: "spine" BROAD [FMA:13478] synonym: "vertebral column skeleton" RELATED [AAO:0000699] xref: AAO:0000699 xref: AAO:0000734 xref: BTO:0000818 xref: EFO:0001369 xref: EHDA:10119 xref: EHDAA:2895 xref: EMAPA:16666 xref: FMA:13478 xref: GAID:106 xref: galen:SpinalColumn xref: MA:0002416 xref: MESH:A.02.835.232.834 xref: ncithesaurus:Vertebral_Column xref: NIF_Subcellular:sao1145756102 xref: OG:0001142 xref: OpenCyc:Mx4rv2j-CpwpEbGdrcN5Y29ycA xref: OpenCyc:Mx4rv6GF55wpEbGdrcN5Y29ycA xref: OpenCyc:Mx4rvVkFEpwpEbGdrcN5Y29ycA xref: SCTID:44300000 xref: TAO:0001559 xref: XAO:0003074 xref: ZFA:0001559 is_a: UBERON:0000075 ! subdivision of skeletal system is_a: UBERON:0009568 ! implied link automatically realized ! trunk region of vertebral column relationship: part_of UBERON:0001137 ! back relationship: part_of UBERON:0002090 ! postcranial axial skeleton [Term] id: UBERON:0001131 name: vertebral foramen alt_id: UBERON:FMA_13479-MA_0001454 def: "In a typical vertebra, the vertebral foramen is the foramen formed by the anterior segment, and the posterior part, the vertebral arch. The vertebral foramen begins at cervical vertebrae #1 and continues inferior to lumbar vertebrae #5. Within this foramen the spinal cord and associated meninges are housed. [WP,unvetted]." [Wikipedia:Vertebral_foramen] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "vertebra neural canal" EXACT [] xref: AAO:0000729 xref: FMA:13479 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/10/Foramenvertebrale.png/200px-Foramenvertebrale.png xref: MA:0001454 xref: OpenCyc:Mx4rv_EvQZwpEbGdrcN5Y29ycA xref: SCTID:280734009 is_a: UBERON:0004111 ! anatomical conduit is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0002412 ! vertebra [Term] id: UBERON:0001132 name: parathyroid gland alt_id: UBERON:FMA_13890-MA_0000128-MIAA_0000082-XAO_0000167 def: "The parathyroid gland is an organ specialised for secretion of parathyroid hormone[GO]. Parathyroid glands control the amount of calcium in the blood and within the bones[WP]." [Wikipedia:Parathyroid_gland] comment: Parathyroid glands are found in all adult tetrapods, although they vary in their number, and in their exact position. Mammals typically have four parathyroids, while other groups typically have six. Fish do not possess parathyroid glands, although the ultimobranchial glands, which are found close to the oesophagus, may have a similar function and could even be homologous with the tetrapod parathyroids. Even these glands are absent in the most primitive vertebrates, the jawless fish, but as these species have no bone in their skeletons, only cartilage, it may be that they have less need to regulate calcium metabolism. The conserved homology of genes and calcium-sensing receptors in fish gills with those in the parathryroid glands of birds and mammals is recognized by evolutionary developmental biology as evolution-using genes and gene networks in novel ways to generate new structures with some similar functions and novel functions[WP]. The parathryoid gland is not formed in fish, but is only found in tetrapods. In humans and chick it emerges from pouches 3 and 4, but in mice it is exclusively generated by the third pouch[PMID:16313389] Note that the developmental relationships here need some modification subset: organ_slim subset: uberon_slim synonym: "parathyroid" EXACT [] synonym: "parathyroid secreting cell" RELATED [] xref: AAO:0010545 xref: BTO:0000997 xref: EFO:0000862 xref: EV:0100134 xref: FMA:13890 xref: GAID:452 xref: MA:0000128 xref: MAT:0000082 xref: MESH:A.06.407.560 xref: MIAA:0000082 xref: ncithesaurus:Parathyroid_Gland xref: OG:0001188 xref: SCTID:181121007 xref: XAO:0000167 is_a: UBERON:0002368 ! implied link automatically realized ! endocrine gland is_a: UBERON:0002530 ! gland is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: develops_from UBERON:0007124 {source="PMID:16313389"} ! pharyngeal pouch 3 relationship: develops_from UBERON:0007125 {gci_filler="NCBITaxon:9030", gci_relation="part_of", notes="pouches 3 and 4 in chick", source="PMID:16313389"} ! pharyngeal pouch 4 relationship: part_of UBERON:0000949 ! endocrine system [Term] id: UBERON:0001133 name: cardiac muscle tissue alt_id: UBERON:FMA_14068-MA_0002441 def: "Muscle composed of cardiac muscle cells that is part of the heart[ZFA]. involuntary striated muscle found in the walls of the heart, specifically the myocardium[Wikipedia]. Tissue which consists of cardiac myocytes surrounded by cardiac endomysium. Examples: Cardiac muscle tissue proper, conducting tissue of heart[FMA]." [FMA:14068] comment: check relationship with myocardium. part_of in MA - but we also have a more specific class 'cardiac muscle tissue of myocardium'. Check ncit subset: uberon_slim subset: vertebrate_core synonym: "cardiac muscle" EXACT [] synonym: "cardiac muscle muscle tissue" EXACT [OBOL:automatic] synonym: "cardiac muscle textus muscularis" EXACT [OBOL:automatic] synonym: "heart muscle muscle tissue" EXACT [OBOL:automatic] synonym: "heart muscle textus muscularis" EXACT [OBOL:automatic] synonym: "heart myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "heart myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "muscle of heart muscle tissue" EXACT [OBOL:automatic] synonym: "muscle of heart textus muscularis" EXACT [OBOL:automatic] synonym: "muscle tissue of cardiac muscle" EXACT [OBOL:automatic] synonym: "muscle tissue of heart muscle" EXACT [OBOL:automatic] synonym: "muscle tissue of heart myocardium" EXACT [OBOL:automatic] synonym: "muscle tissue of muscle of heart" EXACT [OBOL:automatic] synonym: "muscle tissue of myocardium" EXACT [OBOL:automatic] synonym: "myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "textus muscularis of cardiac muscle" EXACT [OBOL:automatic] synonym: "textus muscularis of heart muscle" EXACT [OBOL:automatic] synonym: "textus muscularis of heart myocardium" EXACT [OBOL:automatic] synonym: "textus muscularis of muscle of heart" EXACT [OBOL:automatic] synonym: "textus muscularis of myocardium" EXACT [OBOL:automatic] xref: AAO:0010245 xref: AEO:0000142 xref: BTO:0000199 xref: EHDAA2:0003142 xref: FMA:14068 xref: galen:CardiacMuscle xref: galen:CardiacMuscleTissue xref: MA:0002441 xref: ncithesaurus:Heart_Muscle xref: ZFA:0005280 is_a: UBERON:0002036 ! implied link automatically realized ! striated muscle tissue relationship: part_of UBERON:0000948 {source="ZFA"} ! heart [Term] id: UBERON:0001134 name: skeletal muscle tissue alt_id: UBERON:FMA_14069-MA_0002439 def: "Tissue which consists of skeletal muscle fibers surrounded by endomysium. Examples: Skeletal muscle tissue of biceps, Skeletal muscle tissue of diaphragm[FMA]. Striated muscle tissue under control of the somatic nervous system. It is one of three major muscle types, the others being cardiac and smooth muscle. As its name suggests, most skeletal muscle is attached to bones by bundles of collagen fibers known as tendons. Skeletal muscle is made up of individual components known as muscle fibers. These fibers are formed from the fusion of developmental myoblasts. The myofibers are long, cylindrical, multinucleated cells composed of actin and myosin myofibrils repeated as a sarcomere, the basic functional unit of the cell and responsible for skeletal muscle's striated appearance and forming the basic machinery necessary for muscle contraction. The term muscle refers to multiple bundles of muscle fibers held together by connective tissue[WP]." [Wikipedia:Skeletal_muscle] comment: TODO - add skeletal muscle organ? See GO:0060538 skeletal muscle organ development. Consider FBbt:00005073 - somatic muscle. subset: uberon_slim subset: vertebrate_core synonym: "skeletal muscle" EXACT [] synonym: "skeletal muscle organ" RELATED [] synonym: "skeletal muscle system" RELATED [BTO:0001103] synonym: "somatic muscle" RELATED [BTO:0001103] xref: AAO:0011099 xref: BTO:0001103 xref: EFO:0000888 xref: EHDAA:2923 xref: EHDAA:5035 xref: EHDAA:5043 xref: EHDAA:5978 xref: EHDAA:5984 xref: EHDAA:8277 xref: EHDAA:8291 xref: EHDAA:8326 xref: EHDAA:9146 xref: EHDAA2:0001842 xref: EV:0100377 xref: FMA:14069 xref: GAID:141 xref: MA:0002439 xref: MAT:0000302 xref: MESH:A.02.633.567 xref: MIAA:0000302 xref: ncithesaurus:Skeletal_Muscle_Tissue xref: OG:0000319 xref: OpenCyc:Mx4rv2kf-5wpEbGdrcN5Y29ycA xref: SCTID:426215008 xref: XAO:0000174 xref: ZFA:0005277 is_a: UBERON:0002036 ! implied link automatically realized ! striated muscle tissue disjoint_from: UBERON:0001133 ! cardiac muscle tissue relationship: develops_from UBERON:0003082 ! myotome [Term] id: UBERON:0001135 name: smooth muscle tissue alt_id: UBERON:FMA_14070-MA_0002440 def: "Smooth muscle differs from striated muscle in the much higher actin/myosin ratio, the absence of conspicuous sarcomeres and the ability to contract to a much smaller fraction of its resting length[GO]. Tissue which consists of smooth muscle fibers surrounded by a reticulum of collagen and elastic fibers. Examples: Arrector muscle of hair, Muscularis mucosae." [Wikipedia:Smooth_muscle_tissue] comment: terminological note: GO uses visceral and smooth interchangeably. However visceral can also be used in the sense of the viscera. Many fly annotations to smooth muscle terms. If we want to be inclusive of insects have to have a general definition of tissue that includes cells. subset: uberon_slim subset: vertebrate_core synonym: "involuntary muscle" EXACT [] synonym: "non-striated muscle" EXACT [] synonym: "smooth muscle" EXACT [] synonym: "textus muscularis nonstriatus" EXACT [FMA:14070, FMA:TA] synonym: "visceral muscle" NARROW SENSU [] synonym: "visceral muscle tissue" NARROW SENSU [] xref: AAO:0010244 xref: AEO:0000141 xref: BTO:0001260 xref: EFO:0000889 xref: EHDAA2:0003141 xref: EMAPA:18923 xref: EV:0100378 xref: FBbt:00003525 xref: FMA:14070 xref: GAID:167 xref: galen:SmoothMuscle xref: galen:SmoothMuscleTissue xref: MA:0000166 xref: MAT:0000303 xref: MESH:A.02.633.570 xref: MIAA:0000303 xref: ncithesaurus:Smooth_Muscle_Tissue xref: OG:0001246 xref: OpenCyc:Mx4rvvSS3pwpEbGdrcN5Y29ycA xref: WBbt:0005781 xref: XAO:0000175 xref: ZFA:0005274 is_a: UBERON:0002385 ! implied link automatically realized ! muscle tissue disjoint_from: UBERON:0002036 ! striated muscle tissue [Term] id: UBERON:0001136 name: mesothelium alt_id: UBERON:FMA_14074-MA_0000565 def: "Simple squamous epithelium of mesodermal origin which lines serous membranes. Examples: mesothelium of pleura, mesothelium of peritoneum. Wikipedia: The mesothelium is a membrane that forms the lining of several body cavities: the pleura (thoracal cavity), peritoneum (abdominal cavity including the mesentery) and pericardium (heart sac). Mesothelial tissue also surrounds the male internal reproductive organs (the tunica vaginalis testis) and covers the internal reproductive organs of women (the tunica serosa uteri)." [Wikipedia:Mesothelium] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "meso-epithelium" EXACT [] xref: AEO:0000111 xref: BTO:0002422 xref: EHDAA:2331 xref: EHDAA:2339 xref: EHDAA:2349 xref: EHDAA:295 xref: EHDAA:6073 xref: EHDAA:640 xref: EHDAA:646 xref: EHDAA2:0003111 xref: FMA:14074 xref: MA:0000565 xref: ncithesaurus:Mesothelium xref: SCTID:361918002 is_a: UBERON:0000487 ! implied link automatically realized ! simple squamous epithelium is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: adjacent_to UBERON:0000042 relationship: develops_from UBERON:0000926 intersection_of: UBERON:0000487 ! simple squamous epithelium intersection_of: adjacent_to UBERON:0000042 ! serous membrane intersection_of: develops_from UBERON:0000926 ! mesoderm [Term] id: UBERON:0001137 name: back alt_id: UBERON:FMA_14181-MA_0000020 def: "In humans: large posterior area of the human body, rising from the top of the buttocks to the back of the neck and the shoulders. It is the surface opposite to the chest, its height being defined by the vertebral column (commonly referred to as the spine or backbone) and its breadth being supported by the ribcage and shoulders. The spinal canal runs through the spine and provides nerves to the rest of the body[WP]." [Wikipedia:Back] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "back of body proper" EXACT [FMA:14181] synonym: "back of trunk" EXACT [MA:0000020] xref: BTO:0001713 xref: EFO:0001405 xref: FMA:14181 xref: GAID:30 xref: galen:Back xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/432px-Gray-back.PNG/200px-432px-Gray-back.PNG xref: MA:0000020 xref: MESH:A.01.176 xref: ncithesaurus:Back xref: OpenCyc:Mx4rvVkEU5wpEbGdrcN5Y29ycA is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0002100 ! trunk [Term] id: UBERON:0001138 name: superior mesenteric vein alt_id: UBERON:FMA_14332-MA_0002179 def: "In anatomy, the superior mesenteric vein (SMV) is a blood vessel that drains blood from the small intestine. At its termination behind the neck of the pancreas, the SMV combines with the splenic vein to form the hepatic portal vein. The SMV lies to the right of the similarly named artery, the superior mesenteric artery, which originates from the abdominal aorta. [WP,unvetted]." [Wikipedia:Superior_mesenteric_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "upper mesenteric vein" RELATED [BTO:0002783] xref: BTO:0002783 xref: EHDAA:5414 xref: EHDAA2:0001951 xref: EMAPA:18643 xref: FMA:14332 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/Gray591.png/200px-Gray591.png xref: MA:0002179 xref: ncithesaurus:Superior_Mesenteric_Vein xref: OG:0000552 xref: OpenCyc:Mx4rwFjmM5wpEbGdrcN5Y29ycA xref: SCTID:278031001 is_a: UBERON:0005617 ! mesenteric vein relationship: develops_from UBERON:0005487 {source="Wikipedia:Vitelline_vein"} ! vitelline vein [Term] id: UBERON:0001139 name: common iliac vein alt_id: UBERON:FMA_14333-MA_0002143 def: "In human anatomy, the common iliac veins are formed by the external iliac veins and internal iliac veins and together, in the abdomen at the level of the fifth lumbar vertebrae, form the inferior vena cava. They drain blood from the pelvis and lower limbs. Both common iliac veins are accompanied along their course by common iliac arteries. [WP,unvetted]." [Wikipedia:Common_iliac_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "common iliac venous tree" EXACT [] xref: EMAPA:17874 xref: FMA:14333 xref: galen:CommonIliacVein xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/65/Iliac_veins.gif/200px-Iliac_veins.gif xref: MA:0002143 xref: ncithesaurus:Common_Iliac_Vein xref: OpenCyc:Mx4rv92CGZwpEbGdrcN5Y29ycA xref: SCTID:181398004 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001140 name: renal vein alt_id: UBERON:FMA_14334-MA_0002210 def: "The renal veins are veins that drain the kidney. They connect the kidney to the inferior vena cava. It is usually singular to each kidney, except in the condition 'multiple renal veins'. It also divides into 2 divisions upon entering the kidney: the anterior branch which receives blood from the anterior portion of the kidney and, the posterior branch which receives blood from the posterior portion. Often, each renal vein will have a branch that receives blood from the ureter. [WP,unvetted]." [Wikipedia:Renal_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "kidney vein" EXACT [OBOL:automatic] synonym: "kidney venous blood vessel" EXACT [MA:0002591] synonym: "renal venous tree" EXACT [] synonym: "vein of kidney" EXACT [OBOL:automatic] xref: BTO:0002681 xref: EHDAA:8722 xref: EHDAA2:0001602 xref: EMAPA:19223 xref: EMAPA:28376 xref: FMA:14334 xref: GAID:544 xref: galen:RenalVein xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/76/Gray1122.png/200px-Gray1122.png xref: MA:0002210 xref: MA:0002591 xref: MESH:A.07.231.908.752 xref: ncithesaurus:Renal_Vein xref: OpenCyc:Mx4rvdUXKJwpEbGdrcN5Y29ycA xref: SCTID:116358006 is_a: UBERON:0001638 ! vein is_a: UBERON:0003517 ! implied link automatically realized ! kidney blood vessel relationship: part_of UBERON:0002113 intersection_of: UBERON:0001638 ! vein intersection_of: part_of UBERON:0002113 ! kidney relationship: part_of UBERON:0002113 ! kidney [Term] id: UBERON:0001141 name: right renal vein alt_id: UBERON:FMA_14335-MA_0002212 comment: This class was created automatically from a combination of ontologies xref: FMA:14335 xref: MA:0002212 xref: ncithesaurus:Right_Renal_Vein xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rvdUXKJwpEbGdrcN5Y29ycA xref: SCTID:116357001 is_a: UBERON:0001140 ! renal vein [Term] id: UBERON:0001142 name: left renal vein alt_id: UBERON:FMA_14336-MA_0002211 def: "The renal veins are veins that drain the kidney. They connect the kidney to the inferior vena cava. It is usually singular to each kidney, except in the condition 'multiple renal veins'. It also divides into 2 divisions upon entering the kidney: the anterior branch which receives blood from the anterior portion of the kidney and, the posterior branch which receives blood from the posterior portion. Often, each renal vein will have a branch that receives blood from the ureter. [WP,unvetted]." [Wikipedia:Left_renal_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:14336 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/76/Gray1122.png/200px-Gray1122.png xref: MA:0002211 xref: ncithesaurus:Left_Renal_Vein xref: OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rvdUXKJwpEbGdrcN5Y29ycA xref: SCTID:116356005 is_a: UBERON:0001140 ! renal vein [Term] id: UBERON:0001143 name: hepatic vein alt_id: UBERON:FMA_14337-XAO_0000387-ZFA_0000670 def: "In human anatomy, the hepatic veins are the blood vessels that drain de-oxygenated blood from the liver and blood cleaned by the liver into the inferior vena cava. They arise from the substance of the liver, more specifically the central vein of the liver lobule. None of the hepatic veins have valves. [WP,unvetted]." [Wikipedia:Hepatic_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "hepatic veins" RELATED [] synonym: "liver vein" EXACT [OBOL:automatic] synonym: "vein of liver" EXACT [OBOL:automatic] synonym: "vena hepatica" EXACT [] xref: AAO:0010216 xref: EMAPA:19221 xref: FMA:14337 xref: GAID:534 xref: galen:HepaticVein xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/61/Gray1121.png/200px-Gray1121.png xref: MESH:A.07.231.908.380 xref: ncithesaurus:Hepatic_Vein xref: OpenCyc:Mx4rv5GivJwpEbGdrcN5Y29ycA xref: SCTID:278191001 xref: TAO:0000670 xref: XAO:0000387 xref: ZFA:0000670 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001638 ! vein is_a: UBERON:0003497 ! implied link automatically realized ! abdomen blood vessel is_a: UBERON:0005911 ! implied link automatically realized ! endo-epithelium relationship: part_of UBERON:0002107 intersection_of: UBERON:0001638 ! vein intersection_of: part_of UBERON:0002107 ! liver relationship: develops_from UBERON:0005487 {source="Wikipedia:Vitelline_vein"} ! vitelline vein relationship: part_of UBERON:0006877 ! vasculature of liver [Term] id: UBERON:0001144 name: testicular vein alt_id: UBERON:FMA_14344-MA_0002234 def: "The testicular vein (or spermatic vein), the male gonadal vein, carries deoxygenated blood from its corresponding testis to the inferior vena cava or one of its tributaries. It is the male equivalent of the ovarian vein, and is the venous counterpart of the testicular artery. It is a paired vein, with one supplying each testis: the right testicular vein generally joins the inferior vena cava; the left testicular vein, unlike the right, often joins the left renal vein instead of the inferior vena cava. The veins emerge from the back of the testis, and receive tributaries from the epididymis; they unite and form a convoluted plexus, called the pampiniform plexus, which constitutes the greater mass of the spermatic cord; the vessels composing this plexus are very numerous, and ascend along the cord, in front of the ductus deferens. Below the subcutaneous inguinal ring, they unite to form three or four veins, which pass along the inguinal canal, and, entering the abdomen through the abdominal inguinal ring, coalesce to form two veins, which ascend on the Psoas major, behind the peritoneum, lying one on either side of the internal spermatic artery. These unite to form a single vein, which opens, on the right side, into the inferior vena cava (at an acute angle), on the left side into the left renal vein (at a right angle). The spermatic veins are provided with valves. The left spermatic vein passes behind the iliac colon and is thus exposed to pressure from the contents of that part of the bowel. [WP,unvetted]." [https://sourceforge.net/tracker/?func=detail&aid=3220553&group_id=76834&atid=1205376, Wikipedia:Testicular_vein] comment: Comment: todo - check testicular vs spermatic vein (MA:0002218) subset: uberon_slim synonym: "male gonadal vein" EXACT [Wikipedia:Testicular_vein] synonym: "spermatic vein" EXACT [Wikipedia:Testicular_vein] synonym: "testicle vein" EXACT [OBOL:automatic] synonym: "testicular venous tree" EXACT [Wikipedia:Testicular_vein] synonym: "vein of testicle" EXACT [OBOL:automatic] synonym: "vena tesicularis" RELATED [BTO:0002678] xref: BTO:0002678 xref: EMAPA:18647 xref: FMA:14344 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/Gray590.png/200px-Gray590.png xref: MA:0002218 xref: MA:0002234 xref: ncithesaurus:Spermatic_Vein xref: OpenCyc:Mx4rv1WIHpwpEbGdrcN5Y29ycA xref: SCTID:264496006 is_a: UBERON:0001638 ! vein is_a: UBERON:0003848 ! implied link automatically realized ! gonadal vein relationship: attached_to UBERON:0000473 intersection_of: UBERON:0001638 ! vein intersection_of: attached_to UBERON:0000473 ! testis [Term] id: UBERON:0001145 name: ovarian vein alt_id: UBERON:FMA_14346-MA_0002186 def: "The ovarian vein, the female gonadal vein, carries deoxygenated blood from its corresponding ovary to inferior vena cava or one of its tributaries. It is the female equivalent of the testicular vein, and is the venous counterpart of the ovarian artery. It can be found in the suspensory ligament of the ovary. It a paired vein, with one supplying each ovary. The right ovarian vein travels through the suspensatory ligament of the ovary and generally joins the inferior vena cava. The left ovarian vein, unlike the right, often joins the left renal vein instead of the inferior vena cava. [WP,unvetted]." [Wikipedia:Ovarian_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "female reproductive system gonad vein" EXACT [OBOL:automatic] synonym: "female reproductive system gonada vein" EXACT [OBOL:automatic] synonym: "gonad of female reproductive system vein" EXACT [OBOL:automatic] synonym: "gonada of female reproductive system vein" EXACT [OBOL:automatic] synonym: "ovary vein" EXACT [OBOL:automatic] synonym: "vein of female reproductive system gonad" EXACT [OBOL:automatic] synonym: "vein of female reproductive system gonada" EXACT [OBOL:automatic] synonym: "vein of gonad of female reproductive system" EXACT [OBOL:automatic] synonym: "vein of gonada of female reproductive system" EXACT [OBOL:automatic] synonym: "vein of ovary" EXACT [OBOL:automatic] xref: EMAPA:18644 xref: FMA:14346 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cf/Ovarschaf.jpg/200px-Ovarschaf.jpg xref: MA:0002186 xref: ncithesaurus:Ovarian_Vein xref: OpenCyc:Mx4rvrST5ZwpEbGdrcN5Y29ycA xref: SCTID:278193003 is_a: UBERON:0001638 ! vein is_a: UBERON:0004911 ! implied link automatically realized ! epithelium of female gonad relationship: part_of UBERON:0000992 intersection_of: UBERON:0001638 ! vein intersection_of: part_of UBERON:0000992 ! female gonad [Term] id: UBERON:0001146 name: suprarenal vein alt_id: UBERON:FMA_14348-MA_0002229 def: "The Suprarenal veins are two in number: the right ends in the inferior vena cava. the left ends in the left renal or left inferior phrenic vein. They receive blood from the adrenal glands and will sometimes form anastomoses with the inferior phrenic veins. [WP,unvetted]." [Wikipedia:Suprarenal_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: EHDAA:8731 xref: EHDAA2:0001966 xref: FMA:14348 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/76/Gray1122.png/200px-Gray1122.png xref: MA:0002229 xref: ncithesaurus:Suprarenal_Vein xref: SCTID:278194009 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001147 name: trunk of peripheral nerve alt_id: UBERON:FMA_14383-MA_0000229 comment: This class was created automatically from a combination of ontologies synonym: "peripheral nerve trunk" EXACT [] synonym: "peripheral neural trunk" EXACT [] xref: EMAPA:16986 xref: FMA:14383 xref: MA:0000229 is_a: UBERON:0002464 ! nerve trunk [Term] id: UBERON:0001148 name: median nerve alt_id: UBERON:FMA_14385-MA_0001168 def: "The median nerve is a nerve in humans and other animals. It is in the upper limb. It is one of the five main nerves originating from the brachial plexus. The median nerve is formed from parts of the medial and lateral cords of the brachial plexus, and continues down the arm to enter the forearm with the brachial artery. It originates from the brachial plexus with roots from C5, C6, C7, C8 & T1. The median nerve is the only nerve that passes through the carpal tunnel, where it may be compressed to cause carpal tunnel syndrome. [WP,unvetted]." [Wikipedia:Median_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: EHDAA:5648 xref: EHDAA2:0001086 xref: EMAPA:17277 xref: FMA:14385 xref: GAID:843 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a7/Nerves_of_the_left_upper_extremity.gif/200px-Nerves_of_the_left_upper_extremity.gif xref: MA:0001168 xref: MESH:A.08.800.800.720.050.500 xref: ncithesaurus:Median_Nerve xref: OpenCyc:Mx4rwF4HF5wpEbGdrcN5Y29ycA xref: SCTID:181010001 is_a: UBERON:0002003 ! peripheral nerve is_a: UBERON:0003433 ! implied link automatically realized ! arm nerve relationship: part_of UBERON:0001460 ! arm relationship: part_of UBERON:0001814 ! brachial nerve plexus [Term] id: UBERON:0001149 name: bare area of liver alt_id: UBERON:FMA_14480-MA_0000359 comment: This class was created automatically from a combination of ontologies synonym: "area nuda (hepar)" EXACT [] synonym: "area nuda hepatis" EXACT [] synonym: "liver bare area" EXACT [] xref: EMAPA:17945 xref: EMAPA:18308 xref: EMAPA:18312 xref: FMA:14480 xref: MA:0000359 xref: SCTID:279965008 is_a: UBERON:0000466 ! immaterial anatomical entity relationship: part_of UBERON:0001114 ! right lobe of liver [Term] id: UBERON:0001150 name: body of pancreas alt_id: UBERON:FMA_14518-MA_0000121 def: "The body of the pancreas is a subsection of the pancreas organ in the human body. It is somewhat prismatic in shape, and has three surfaces: anterior, posterior, and inferior. It is at the same level as the transpyloric plane. [WP,unvetted]." [Wikipedia:Body_of_pancreas] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "pancreas body" EXACT [] synonym: "pancreas corpus" RELATED [] synonym: "pancreatic body" EXACT [] xref: EHDAA:9178 xref: EHDAA2:0001368 xref: EMAPA:17504 xref: EMAPA:18817 xref: FMA:14518 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Illu_pancreas_duodenum.jpg/200px-Illu_pancreas_duodenum.jpg xref: MA:0000121 xref: ncithesaurus:Body_of_the_Pancreas xref: OG:0000451 xref: SCTID:362202004 is_a: UBERON:0000064 ! organ part is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0001264 ! pancreas [Term] id: UBERON:0001151 name: tail of pancreas alt_id: UBERON:FMA_14519-MA_0000123 def: "The tail of the pancreas, located anatomically left near the hilum of the spleen, is not simply an anatomical distinction. The tail is the only part of the pancreas which contains Pancreatic Polypeptide (PP) cells, which are responsible for secreting pancreatic polypeptide to coordinate exocrine and islet enzyme release. PP cells are found in the tail's periphery. Beta cells and delta cells are found in the central part of the tail as with the rest of the pancreas. The cells described above are located exclusively in the islet cells; their secretions reach exocrine portions of the pancreas via the capillary network surrounding the islet cell populations. [WP,unvetted]." [Wikipedia:Tail_of_pancreas] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "left extremity of pancreas" EXACT [FMA:14519] synonym: "pancreas tail" EXACT [] synonym: "pancreatic tail" EXACT [FMA:14519] xref: EHDAA2:0001390 xref: EMAPA:17511 xref: EMAPA:18824 xref: FMA:14519 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Illu_pancreas_duodenum.jpg/200px-Illu_pancreas_duodenum.jpg xref: MA:0000123 xref: ncithesaurus:Tail_of_the_Pancreas xref: OG:0000452 xref: SCTID:245382003 is_a: UBERON:0000064 ! organ part is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure relationship: develops_from UBERON:0009708 {source="EHDAA2"} ! dorsal pancreas relationship: part_of UBERON:0001264 {source="FMA"} ! pancreas [Term] id: UBERON:0001152 name: cystic duct alt_id: UBERON:FMA_14539-MA_0000355 def: "The cystic duct is the short duct that joins the gall bladder to the common bile duct. It usually lies next to the cystic artery. It is of variable length. It contains a 'spiral valve', which does not provide much resistance to the flow of bile. [WP,unvetted]." [Wikipedia:Cystic_duct] subset: uberon_slim subset: vertebrate_core xref: EHDAA:3045 xref: EHDAA2:0000333 xref: EMAPA:16841 xref: FMA:14539 xref: GAID:290 xref: galen:CysticDuct xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5d/Digestive_system_showing_bile_duct.png/200px-Digestive_system_showing_bile_duct.png xref: MA:0000355 xref: MESH:A.03.159.183.419 xref: ncithesaurus:Cystic_Duct xref: OG:0000213 xref: OpenCyc:Mx4rveBeC5wpEbGdrcN5Y29ycA xref: SCTID:245398005 xref: ZFA:0005166 is_a: UBERON:0003703 {source="FMA"} ! extrahepatic bile duct relationship: continuous_with UBERON:0001174 ! common bile duct relationship: continuous_with UBERON:0002110 ! gallbladder relationship: develops_from UBERON:0005604 {source="EHDAA2"} ! hepatic duct extrahepatic part relationship: part_of UBERON:0001173 {source="FMA"} ! biliary tree [Term] id: UBERON:0001153 name: caecum alt_id: UBERON:FMA_14541-MA_0000334-MIAA_0000288 def: "Pouch, connecting the ileum with the ascending colon of the large intestine. It is separated from the ileum by the ileocecal valve, and is the beginning of the large intestine. It is also separated from the colon by the cecocolic junction." [Wikipedia:Cecum] comment: A cecum is present in most amniote species, and also in lungfish, but not in any living species of amphibian. In reptiles, it is usually a single median structure, arising from the dorsal side of the large intestine. Birds typically have two paired ceca, as, unlike other mammals, do hyraxes. Most mammalian herbivores have a relatively large cecum, hosting a large number of bacteria, which aid in the enzymatic breakdown of plant materials such as cellulose; in many species, it is considerably wider than the colon. In contrast, obligatory carnivores, whose diets contain little or no plant material, have a reduced cecum, which is often partially or wholly replaced by the vermiform appendix. Many fish have a number of small outpocketings, called pyloric ceca, along their intestine; despite the name they are not homologous with the cecum of amniotes, and their purpose is to increase the overall area of the digestive epithelium.[2] Some invertebrates, such as squid,[3] may also have structures with the same name, but these have no relationship with those of vertebrates.[WP] subset: uberon_slim synonym: "blind intestine" RELATED [BTO:0000166] synonym: "blindgut" RELATED [BTO:0000166] synonym: "cecum" EXACT [FMA:14541] synonym: "intestinum caecum" RELATED [BTO:0000166] synonym: "intestinum crassum caecum" EXACT [] synonym: "intestinum crassum cecum" RELATED [BTO:0000166] xref: BTO:0000166 xref: EFO:0000850 xref: EHDAA:3913 xref: EHDAA2:0000206 xref: EV:0100397 xref: FMA:14541 xref: GAID:307 xref: galen:Cecum xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/82/Stomach_colon_rectum_diagram.svg/200px-Stomach_colon_rectum_diagram.svg.png xref: MA:0000334 xref: MESH:A.03.492.411.495.209 xref: MIAA:0000288 xref: ncithesaurus:Cecum xref: OG:0001559 xref: OpenCyc:Mx4rve6u4JwpEbGdrcN5Y29ycA xref: SCTID:181256004 is_a: UBERON:0009854 ! digestive tract diverticulum relationship: continuous_with UBERON:0001156 {source="Wikipedia"} ! ascending colon relationship: develops_from UBERON:0001045 {source="Wikipedia"} ! midgut relationship: part_of UBERON:0000059 {source="MA"} ! large intestine relationship: part_of UBERON:0001155 {source="EHDAA2"} ! colon [Term] id: UBERON:0001154 name: appendix alt_id: UBERON:FMA_14542-MA_0001540-MIAA_0000287 def: "Organ with organ cavity which is continuous proximally with the cecum and distally terminates in the tip of the appendix[FMA]. a narrowed, thickened, lymphoid-rich caecal apex [Fisher 2000]." [FMA:14542, Wikipedia:Vermiform_appendix] subset: organ_slim subset: uberon_slim synonym: "apex of cecum" RELATED [] synonym: "appendix vermiformis" EXACT [FMA:14542, FMA:TA] synonym: "caecal appendix" EXACT [] synonym: "vermiform appendix" EXACT [] synonym: "vermix" EXACT [] xref: BTO:0000084 xref: EFO:0000849 xref: EHDAA2:0000588 xref: EV:0100076 xref: EV:0100080 xref: FMA:14542 xref: GAID:308 xref: galen:AppendixVermiformis xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ad/Gray536.png/200px-Gray536.png xref: MA:0001540 xref: MAT:0000287 xref: MESH:A.03.492.411.495.209.290 xref: MIAA:0000287 xref: ncithesaurus:Vermiform_Appendix xref: OG:0001306 xref: OpenCyc:Mx4rvVjGgJwpEbGdrcN5Y29ycA xref: SCTID:181255000 is_a: UBERON:0000062 ! organ is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure relationship: develops_from UBERON:0001045 {source="Wikipedia"} ! midgut relationship: part_of UBERON:0001153 {source="MA"} ! caecum relationship: part_of UBERON:0004907 {source="FMA"} ! lower digestive tract [Term] id: UBERON:0001155 name: colon alt_id: UBERON:FMA_14543-FMA_7201-MA_0000333-MA_0000335-MAP_0000001-MIAA_0000046-XAO_0000131-XAO_0000243-ZFA_0000706 def: "Last portion of the digestive system in most vertebrates; it extracts water and salt from solid wastes before they are eliminated from the body[WP] In mammals, the colon consists of four sections: the ascending colon, the transverse colon, the descending colon, and the sigmoid colon[WP]. In zebrafish, the posterior intestine has short longitudinally arranged epithelial folds which are similar to the colon of higher vertebrates. Wallace et al, 2005." [Wikipedia:Colon_(anatomy), ZFIN:curator] comment: TODO: abstract this such that it legitimately covers all vertebrates subset: uberon_slim subset: vertebrate_core synonym: "hindgut" RELATED [] synonym: "large bowel" EXACT [] synonym: "posterior intestine" NARROW [] synonym: "posterior intestine - zebrafish" BROAD [] xref: AAO:0010400 xref: BTO:0000269 xref: EFO:0000361 xref: EHDAA2:0000779 xref: EMAPA:18939 xref: EV:0100079 xref: FMA:14543 xref: GAID:309 xref: galen:Colon xref: MA:0000335 xref: MAP:0000001 xref: MAT:0000526 xref: MESH:A.03.492.411.495.356 xref: ncithesaurus:Colon xref: OG:0000648 xref: OpenCyc:Mx4rvgLEM5wpEbGdrcN5Y29ycA xref: SCTID:302508007 xref: TAO:0000706 xref: XAO:0000243 xref: ZFA:0000706 is_a: UBERON:0000063 {source="FMA"} ! organ segment is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: part_of UBERON:0000059 {source="FMA"} ! large intestine [Term] id: UBERON:0001156 name: ascending colon alt_id: UBERON:FMA_14545-MA_0001541-MIAA_0000311 def: "Organ part which is continuous with the cecum proximally and the transverse colon distally.[FMA]" [FMA:FMA, Wikipedia:Ascending_colon] comment: Note that in MA, this is a subclass of colon subset: uberon_slim xref: BTO:0000270 xref: EFO:0000843 xref: FMA:14545 xref: galen:AscendingColon xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Dickdarm-Schema.svg/200px-Dickdarm-Schema.svg.png xref: MA:0001541 xref: MAT:0000311 xref: MIAA:0000311 xref: ncithesaurus:Ascending_Colon xref: OpenCyc:Mx4rv3H0FZwpEbGdrcN5Y29ycA xref: SCTID:362162009 is_a: UBERON:0000168 {source="FMA"} ! segment of colon relationship: continuous_with UBERON:0001157 ! transverse colon relationship: develops_from UBERON:0001045 {source="Wikipedia"} ! midgut [Term] id: UBERON:0001157 name: transverse colon alt_id: UBERON:FMA_14546-MA_0001543-MIAA_0000312 def: "The transverse colon the longest and most movable part of the colon, passes with a downward convexity from the right hypochondrium region across the abdomen, opposite the confines of the epigastric and umbilical zones, into the left hypochondrium region, where it curves sharply on itself beneath the lower end of the spleen, forming the splenic or left colic flexure. The right colic flexure is adjacent to the liver. In its course, it describes an arch, the concavity of which is directed backward and a little upward; toward its splenic end there is often an abrupt U-shaped curve which may descend lower than the main curve. It is almost completely invested by peritoneum, and is connected to the inferior border of the pancreas by a large and wide duplicature of that membrane, the transverse mesocolon. It is in relation, by its upper surface, with the liver and gall-bladder, the greater curvature of the stomach, and the lower end of the spleen; by its under surface, with the small intestine; by its anterior surface, with the anterior layers of the greater omentum and the abdominal parietes; its posterior surface is in relation from right to left with the descending portion of the duodenum, the head of the pancreas, and some of the convolutions of the jejunum and ileum. [WP,unvetted]." [Wikipedia:Transverse_colon] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: BTO:0000272 xref: EFO:0000844 xref: FMA:14546 xref: galen:TransverseColon xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Dickdarm-Schema.svg/200px-Dickdarm-Schema.svg.png xref: MA:0001543 xref: MAT:0000312 xref: MIAA:0000312 xref: ncithesaurus:Transverse_Colon xref: OpenCyc:Mx4rvg7qyJwpEbGdrcN5Y29ycA xref: SCTID:362163004 is_a: UBERON:0000168 {source="FMA"} ! segment of colon relationship: continuous_with UBERON:0001158 ! descending colon relationship: develops_from UBERON:0001045 {source="Wikipedia"} ! midgut [Term] id: UBERON:0001158 name: descending colon alt_id: UBERON:FMA_14547-MA_0001542-MIAA_0000313 def: "The descending colon of humans passes downward through the left hypochondrium and lumbar regions, along the lateral border of the left kidney. At the lower end of the kidney it turns medialward toward the lateral border of the psoas muscle, and then descends, in the angle between psoas and quadratus lumborum, to the crest of the ilium, where it ends in the sigmoid colon. The peritoneum covers its anterior surface and sides, and therefore the descending colon is described as retroperitoneal. (The transverse colon and sigmoid colon, which are immediately proximal and distal, are intraperitoneal). Its posterior surface is connected by areolar tissue with the lower and lateral part of the left kidney, the aponeurotic origin of the transversus abdominis, and the quadratus lumborum. It is smaller in caliber and more deeply placed than the ascending colon. It has a mesentery in 33% of people, and is therefore more frequently covered with peritoneum on its posterior surface than the ascending colon (which has a mesentery in 25% of people). However, it is less likely to undergo volvulus than the ascending colon. In front of it are some coils of small intestine. [WP,unvetted]." [Wikipedia:Descending_colon] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: BTO:0000641 xref: EFO:0000845 xref: FMA:14547 xref: galen:DescendingColon xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/ca/Gray1223.png/200px-Gray1223.png xref: MA:0001542 xref: MAT:0000313 xref: MIAA:0000313 xref: ncithesaurus:Descending_Colon xref: OpenCyc:Mx4rwHsNhpwpEbGdrcN5Y29ycA xref: SCTID:362165006 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000168 {source="FMA"} ! segment of colon relationship: continuous_with UBERON:0001159 ! sigmoid colon relationship: develops_from UBERON:0001046 {source="Wikipedia"} ! hindgut [Term] id: UBERON:0001159 name: sigmoid colon alt_id: UBERON:FMA_14548-MIAA_0000314 def: "the part of the large intestine that is closest to the rectum and anus. It forms a loop that averages about 40 cm. in length, and normally lies within the pelvis, but on account of its freedom of movement it is liable to be displaced into the abdominal cavity." [Wikipedia:Sigmoid_colon] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "colon sigmoideum" RELATED [] synonym: "pelvic colon" RELATED [] synonym: "sigmoid colon" RELATED [] synonym: "sigmoid flexure" RELATED [] xref: BTO:0000645 xref: EFO:0000846 xref: FMA:14548 xref: galen:SigmoidColon xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Dickdarm-Schema.svg/200px-Dickdarm-Schema.svg.png xref: MAT:0000314 xref: MESH:A.03.492.411.495.356.668 xref: MIAA:0000314 xref: ncithesaurus:Sigmoid_Colon xref: OpenCyc:Mx4rwHX_-5wpEbGdrcN5Y29ycA xref: SCTID:362166007 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000168 {source="FMA"} ! segment of colon relationship: continuous_with UBERON:0001052 ! rectum relationship: develops_from UBERON:0001046 {source="Wikipedia"} ! hindgut [Term] id: UBERON:0001160 name: fundus of stomach alt_id: UBERON:FMA_14559-MA_0001612 def: "The fundus is the portion of the stomach that lies above the cardiac notch[GO]." [GO:0014825, Wikipedia:Fundus_of_stomach] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "fundus gastricus" RELATED [BTO:0000502] synonym: "fundus gastricus (ventricularis)" EXACT [] synonym: "fundus gastricus ventricularis" RELATED [BTO:0000502] synonym: "fundus ventricularis" RELATED [BTO:0000502] synonym: "fundus ventriculi" RELATED [BTO:0000502] synonym: "gastric fundus" EXACT [] synonym: "stomach fundus" EXACT [] xref: BTO:0000502 xref: EFO:0002554 xref: EHDAA:4844 xref: EHDAA2:0001919 xref: FMA:14559 xref: GAID:320 xref: galen:GastricFundus xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/31/Gray1046.svg/200px-Gray1046.svg.png xref: MA:0001612 xref: MESH:A.03.492.766.419 xref: ncithesaurus:Fundus_of_the_Stomach xref: OG:0000421 xref: SCTID:362139007 is_a: UBERON:0009870 {source="FMA"} ! zone of stomach [Term] id: UBERON:0001161 name: body of stomach alt_id: UBERON:FMA_14560-MA_0002559 def: "The body of stomach is the part of the stomach that lies between the fundus above and the pyloric antrum below; its boundaries are poorly defined[GO]." [GO:0014845, Wikipedia:Body_of_stomach] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "corpus gastricum" RELATED [BTO:0000505] synonym: "corpus gastricum (ventriculare)" EXACT [] synonym: "corpus ventriculare" RELATED [BTO:0000505] synonym: "corpus ventriculi" RELATED [BTO:0000505] synonym: "gastric body" EXACT [] synonym: "gastric corpus" RELATED [] synonym: "stomach body" EXACT [] xref: BTO:0000505 xref: FMA:14560 xref: galen:GastricCorpus xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/31/Gray1046.svg/200px-Gray1046.svg.png xref: MA:0002559 xref: ncithesaurus:Body_of_Stomach is_a: UBERON:0009870 {source="FMA"} ! zone of stomach [Term] id: UBERON:0001162 name: cardia of stomach alt_id: UBERON:0004712 alt_id: UBERON:FMA_14561-MA_0001609 def: "The opening of the esophagus into the stomach; also: the part of the stomach adjoining this opening[BTO]. The cardia is the anatomical term for the part of the stomach attached to the esophagus. The cardia begins immediately distal to the z-line of the gastroeosphageal junction, where the squamous epithelium of the esophagus gives way to the columnar epithelium of the gastrointestinal tract[WP]" [BTO:0000198, Wikipedia:Cardia] comment: There were previously conflicting statements in the academic anatomy community[10][11][12] over whether the cardia is part of the stomach, part of the esophagus or a distinct entity. Modern surgical and medical textbooks have agreed that "The gastric cardia is now clearly considered to be part of the stomach"[13][14]. Classical anatomy textbooks, and some other resources[15], describe the cardia as the first of 4 regions of the stomach. This makes sense histologically because the mucosa of the cardia is the same as that of the stomach[WP]. synonym: "antrum cardiacum" RELATED [Wikipedia:Cardia] synonym: "cardiac orifice" RELATED [Wikipedia:Cardia] synonym: "cardiac region" RELATED [Wikipedia:Cardia] synonym: "cardiac sphincter" RELATED [Wikipedia:Cardia] synonym: "cardial orifice" RELATED [Wikipedia:Cardia] synonym: "cardial part of stomach" EXACT [] synonym: "esophageal sphincter" RELATED [Wikipedia:Cardia] synonym: "esophageal sphincter%2c lower" RELATED [Wikipedia:Cardia] synonym: "esophageal-cardiac junction" RELATED [Wikipedia:Cardia] synonym: "esophagogastric junction" RELATED [Wikipedia:Cardia] synonym: "gastric cardia" EXACT [] synonym: "gastro-esophageal junction" RELATED [Wikipedia:Cardia] synonym: "gastro-esophageal sphincter" RELATED [Wikipedia:Cardia] synonym: "gastro-oesophageal junction" RELATED [Wikipedia:Cardia] synonym: "gastroesophageal junction" RELATED [Wikipedia:Cardia] synonym: "gastroesophageal sphincter" RELATED [Wikipedia:Cardia] synonym: "lower esophageal sphincter" RELATED [Wikipedia:Cardia] synonym: "pars cardiaca (gaster)" EXACT [] synonym: "pars cardiaca gastricae" EXACT [FMA:14561, FMA:TA] synonym: "stomach cardiac region" EXACT [MA:0001609] xref: BTO:0000198 xref: FMA:14561 xref: GAID:319 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/Illu_stomach.jpg/200px-Illu_stomach.jpg xref: MA:0001609 xref: MESH:A.03.492.766.163 xref: ncithesaurus:Cardia is_a: UBERON:0009870 {source="FMA"} ! zone of stomach relationship: adjacent_to UBERON:0001043 ! esophagus [Term] id: UBERON:0001163 name: lesser curvature of stomach alt_id: UBERON:FMA_14572-MA_0001616 def: "The lesser curvature of the stomach, extending between the cardiac and pyloric orifices, forms the right or posterior border of the stomach. It descends as a continuation of the right margin of the esophagus in front of the fibers of the right crus of the diaphragm, and then, turning to the right, it crosses the first lumbar vertebra and ends at the pylorus. Nearer its pyloric than its cardiac end is a well-marked notch, the incisura angularis, which varies somewhat in position with the state of distension of the viscus; it serves to separate the stomach into a right and a left portion. The lesser curvature gives attachment to the two layers of the hepatogastric ligament, and between these two layers are the left gastric artery and the right gastric branch of the hepatic artery. [WP,unvetted]." [Wikipedia:Lesser_curvature_of_stomach] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "stomach lesser curvature" EXACT [] xref: FMA:14572 xref: galen:LesserCurvatureOfStomach xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/31/Gray1046.svg/200px-Gray1046.svg.png xref: MA:0001616 xref: ncithesaurus:Lesser_Curvature xref: SCTID:362133008 is_a: UBERON:0009870 {source="FMA"} ! zone of stomach [Term] id: UBERON:0001164 name: greater curvature of stomach alt_id: UBERON:FMA_14574-MA_0001615 def: "The greater curvature of the stomach is directed mainly forward, and is four or five times as long as the lesser curvature. [WP,unvetted]." [Wikipedia:Greater_curvature_of_stomach] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "stomach greater curvature" EXACT [] xref: FMA:14574 xref: galen:GreaterCurvatureOfStomach xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/31/Gray1046.svg/200px-Gray1046.svg.png xref: MA:0001615 xref: ncithesaurus:Greater_Curvature xref: SCTID:362134002 is_a: UBERON:0009870 {source="FMA"} ! zone of stomach [Term] id: UBERON:0001165 name: pyloric antrum alt_id: UBERON:FMA_14579-MA_0001624 def: "Pyloric antrum (antrum, lesser cul-de-sac) is the initial portion of the pyloric part of the stomach. It is near the bottom of the stomach on the left side of the pyloric sphincter, which separates the stomach and the duodenum. It may temporarily become partially or completely shut off from the remainder of the stomach during digestion by peristaltic contraction of the prepyloric sphincter; it is demarcated, sometimes, from the second part of the pyloric part of the stomach by a slight groove. [WP,unvetted]." [Wikipedia:Pyloric_antrum] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "antrum of stomach" EXACT [] synonym: "antrum of Willis" RELATED [BTO:0001732] synonym: "antrum pylori" RELATED [BTO:0001732] synonym: "antrum pyloricum" RELATED [BTO:0001732] synonym: "gastric antrum" RELATED [BTO:0001732] synonym: "stomach antrum" RELATED [] synonym: "stomach pyloric antrum" EXACT [] xref: BTO:0001732 xref: EFO:0002555 xref: EMAPA:17891 xref: EMAPA:18919 xref: FMA:14579 xref: GAID:332 xref: galen:PyloricAntrum xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/31/Gray1046.svg/200px-Gray1046.svg.png xref: MA:0001624 xref: MESH:A.03.492.766.716 xref: ncithesaurus:Antrum_Pylori xref: SCTID:362142001 is_a: UBERON:0009870 {source="FMA"} ! zone of stomach [Term] id: UBERON:0001166 name: pylorus alt_id: UBERON:FMA_14581-MA_0002560 def: "The region of the stomach that connects to the duodenum. It is divided in two parts: the pyloric antrum, which connects to the body of the stomach. the pyloric canal, which connects to the duodenum. The pyloric sphincter, or valve, is a strong ring of smooth muscle at the end of the pyloric canal and lets food pass from the stomach to the duodenum. It receives sympathetic innervation from celiac ganglion. [WP,unvetted]." [Wikipedia:Pylorus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "pars pylorica gastricae" EXACT [FMA:14581, FMA:TA] synonym: "pyloric part of stomach" EXACT [] synonym: "pyloric region" EXACT [] synonym: "stomach pyloric region" EXACT [] synonym: "stomach pyloric region" EXACT [EHDAA2:0001580] xref: BTO:0001146 xref: EHDAA:4860 xref: EHDAA2:0001580 xref: EMAPA:17631 xref: EMAPA:18915 xref: FMA:14581 xref: GAID:333 xref: galen:Pylorus xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/31/Gray1046.svg/200px-Gray1046.svg.png xref: MA:0002560 xref: MESH:A.03.492.766.799 xref: ncithesaurus:Pylorus xref: OG:0000420 xref: SCTID:362143006 is_a: UBERON:0009870 {source="FMA"} ! zone of stomach [Term] id: UBERON:0001167 name: wall of stomach alt_id: UBERON:FMA_14582-MA_0002692 def: "An anatomical wall that is part of a stomach [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "anatomical wall of stomach" EXACT [OBOL:automatic] synonym: "anatomical wall of ventriculus" EXACT [OBOL:automatic] synonym: "gastric wall" EXACT [] synonym: "stomach anatomical wall" EXACT [OBOL:automatic] synonym: "stomach wall" EXACT [] synonym: "ventriculus anatomical wall" EXACT [OBOL:automatic] synonym: "ventriculus wall" EXACT [OBOL:automatic] synonym: "wall of ventriculus" EXACT [OBOL:automatic] xref: FMA:14582 xref: galen:WallOfStomach xref: MA:0002692 xref: SCTID:279995000 is_a: UBERON:0000060 ! anatomical wall is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0000945 intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0000945 ! stomach relationship: part_of UBERON:0000945 ! stomach [Term] id: UBERON:0001168 name: wall of small intestine alt_id: UBERON:FMA_14615-MA_0002696 def: "An anatomical wall that is part of a small intestine [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "anatomical wall of small bowel" EXACT [OBOL:automatic] synonym: "anatomical wall of small intestine" EXACT [OBOL:automatic] synonym: "small bowel anatomical wall" EXACT [OBOL:automatic] synonym: "small bowel wall" EXACT [OBOL:automatic] synonym: "small intestinal wall" EXACT [] synonym: "small intestine anatomical wall" EXACT [OBOL:automatic] synonym: "small intestine wall" EXACT [] synonym: "wall of small bowel" EXACT [OBOL:automatic] xref: FMA:14615 xref: MA:0002696 is_a: UBERON:0000060 ! anatomical wall is_a: UBERON:0001262 ! implied link automatically realized ! wall of intestine relationship: part_of UBERON:0002108 intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0002108 ! small intestine relationship: part_of UBERON:0002108 ! small intestine [Term] id: UBERON:0001169 name: wall of large intestine alt_id: UBERON:FMA_14619-MA_0002695 def: "An anatomical wall that is part of a large intestine [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "anatomical wall of large intestine" EXACT [OBOL:automatic] synonym: "large intestinal wall" EXACT [] synonym: "large intestine anatomical wall" EXACT [OBOL:automatic] synonym: "large intestine wall" EXACT [] xref: FMA:14619 xref: MA:0002695 is_a: UBERON:0000060 ! anatomical wall is_a: UBERON:0001262 ! implied link automatically realized ! wall of intestine relationship: part_of UBERON:0000059 intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0000059 ! large intestine relationship: part_of UBERON:0000059 ! large intestine relationship: part_of UBERON:0001262 ! wall of intestine [Term] id: UBERON:0001170 name: mesentery of small intestine alt_id: UBERON:FMA_14643-MA_0001555 def: "the peritoneum responsible for connecting the jejunum and ileum (parts of the small intestine) to the back wall of the abdomen. Between the two sheets of peritoneum are blood vessels, lymph vessels, and nerves. This allows these parts of the small intestine to move relatively freely within the abdominopelvic cavity. The brain, however, cannot map sensation accurately, so sensation is usually referred to the midline, an example of referred pain[WP]." [Wikipedia:Mesentery#Mesentery_.28proper.29] synonym: "mesentery (proper)" EXACT [Wikipedia:Mesentery] synonym: "mesentery proper" EXACT [FMA:14643] synonym: "small intestinal mesentery" EXACT [FMA:14643] synonym: "small intestine mesentery" EXACT [Obol:automatic] xref: FMA:14643 xref: MA:0001555 xref: SCTID:245456008 is_a: UBERON:0001206 ! implied link automatically realized ! serosa of small intestine is_a: UBERON:0004854 ! implied link automatically realized ! gastrointestinal system mesentery is_a: UBERON:0007826 {source="FMA"} ! peritoneal mesentery relationship: part_of UBERON:0002108 intersection_of: UBERON:0002095 ! mesentery intersection_of: part_of UBERON:0002108 ! small intestine [Term] id: UBERON:0001171 name: portal lobule alt_id: UBERON:FMA_14653-MA_0002498 def: "the triangular region on the periphery of the liver lobules that contain a bile duct and a terminal branch of the hepatic artery and portal vein, and may also include a lymphatic vessel." [MP:0008992] comment: This class was created automatically from a combination of ontologies xref: FMA:14653 xref: MA:0002498 xref: ncithesaurus:Portal_Lobule is_a: UBERON:0000064 ! organ part is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0001280 ! liver parenchyma [Term] id: UBERON:0001172 name: hepatic acinus alt_id: UBERON:FMA_14654-MA_0002496 comment: This class was created automatically from a combination of ontologies synonym: "liver acinus" EXACT [] synonym: "portal acinus" EXACT [] xref: FMA:14654 xref: MA:0002496 xref: ncithesaurus:Liver_Acinus xref: SCTID:272214009 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0009842 {source="FMA"} ! acinus relationship: part_of UBERON:0001171 ! portal lobule relationship: part_of UBERON:0004647 ! liver lobule [Term] id: UBERON:0001173 name: biliary tree alt_id: UBERON:FMA_14665-XAO_0000455 def: "Hollow tree organ, the organ parts of which consists of the bile ducts[FMA]." [FMA:14665, Wikipedia:Biliary_tract] subset: organ_slim subset: uberon_slim synonym: "biliary tract" EXACT [] xref: AAO:0011020 xref: FMA:14665 xref: GAID:279 xref: MA:0001273 xref: MESH:A.03.159 xref: ncithesaurus:Biliary_Tract xref: SCTID:181267003 xref: XAO:0000455 is_a: UBERON:0000062 ! organ is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure relationship: develops_from UBERON:0004912 ! biliary bud relationship: part_of UBERON:0002294 ! biliary system [Term] id: UBERON:0001174 name: common bile duct alt_id: UBERON:FMA_14667-MA_0001631 def: "a tube-like anatomic structure in the human gastrointestinal tract. It is formed by the union of the common hepatic duct and the cystic duct (from the gall bladder). It is later joined by the pancreatic duct to form the ampulla of Vater. There, the two ducts are surrounded by the muscular sphincter of Oddi." [Wikipedia:Common_bile_duct] subset: uberon_slim subset: vertebrate_core synonym: "ductus choledochus (biliaris)" EXACT [] xref: EHDAA:3981 xref: EHDAA2:0000303 xref: EMAPA:17201 xref: FMA:14667 xref: GAID:282 xref: galen:CommonBileDuct xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5d/Digestive_system_showing_bile_duct.png/200px-Digestive_system_showing_bile_duct.png xref: MA:0001631 xref: MESH:A.03.159.183.079.300 xref: ncithesaurus:Common_Bile_Duct xref: OG:0000214 xref: SCTID:362199009 xref: ZFA:0005165 is_a: UBERON:0003703 ! extrahepatic bile duct relationship: continuous_with UBERON:0001152 ! cystic duct relationship: continuous_with UBERON:0001175 ! common hepatic duct relationship: part_of UBERON:0001173 ! biliary tree [Term] id: UBERON:0001175 name: common hepatic duct alt_id: UBERON:FMA_14668-ZFA_0001100 def: "Predominantly extrahepatic bile duct which is formed by the junction of the right and left hepatic ducts, which are predominantly intrahepatic, and, in turn, joins the cystic duct to form the common bile duct[GAID]. The common hepatic duct is the duct formed by the convergence of the right hepatic duct (which drains bile from the right functional lobe of the liver) and the left hepatic duct (which drains bile from the left functional lobe of the liver). The common hepatic duct then joins the cystic duct coming from the gallbladder to form the common bile duct[WP]." [Wikipedia:Common_hepatic_duct, ZFIN:curator] comment: TODO - MA distinguishes between bile duct, hepatic duct, common bile duct and common hepatic duct. in FMA hepatic duct and common hepatic duct are the same. Common is part of extra-hepatic part subset: uberon_slim synonym: "hepatic duct" RELATED [] xref: EMAPA:19101 xref: FMA:14668 xref: GAID:286 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/48/Illu_liver_gallbladder.jpg/200px-Illu_liver_gallbladder.jpg xref: MA:0002660 xref: MESH:A.03.159.183.079.600 xref: ncithesaurus:Common_Hepatic_Duct xref: OG:0000220 xref: SCTID:245403006 is_a: UBERON:0003703 {source="FMA"} ! extrahepatic bile duct relationship: continuous_with UBERON:0001176 {source="Wikipedia"} ! right hepatic duct relationship: continuous_with UBERON:0001177 {source="Wikipedia"} ! left hepatic duct relationship: part_of UBERON:0005604 {source="MA"} ! hepatic duct extrahepatic part [Term] id: UBERON:0001176 name: right hepatic duct alt_id: UBERON:FMA_14669-MA_0001639 def: "The duct that drains bile from the right half of the liver and joins the left hepatic duct to form the common hepatic duct." [http://www.medterms.com/script/main/art.asp?articlekey=26034] comment: This class was created automatically from a combination of ontologies xref: EHDAA:3992 xref: EHDAA2:0001727 xref: EMAPA:18305 xref: EMAPA:19100 xref: FMA:14669 xref: MA:0001639 xref: ncithesaurus:Right_Hepatic_Duct xref: OG:0000217 xref: SCTID:245401008 is_a: UBERON:0003703 ! implied link automatically realized ! extrahepatic bile duct relationship: continuous_with UBERON:0001114 intersection_of: UBERON:0003703 ! extrahepatic bile duct intersection_of: continuous_with UBERON:0001114 ! right lobe of liver relationship: part_of UBERON:0005171 ! hepatic duct [Term] id: UBERON:0001177 name: left hepatic duct alt_id: UBERON:FMA_14670-MA_0001638 def: "The duct that drains bile from the left half of the liver and joins the right hepatic duct to form the common hepatic duct." [http://www.medterms.com/script/main/art.asp?articlekey=26035] xref: EHDAA:3990 xref: EHDAA2:0000941 xref: EMAPA:18304 xref: EMAPA:19099 xref: FMA:14670 xref: MA:0001638 xref: ncithesaurus:Left_Hepatic_Duct xref: OG:0000218 xref: SCTID:245400009 is_a: UBERON:0003703 ! implied link automatically realized ! extrahepatic bile duct relationship: continuous_with UBERON:0001115 intersection_of: UBERON:0003703 ! extrahepatic bile duct intersection_of: continuous_with UBERON:0001115 ! left lobe of liver relationship: part_of UBERON:0005171 ! hepatic duct [Term] id: UBERON:0001178 name: visceral peritoneum alt_id: UBERON:FMA_14703-ZFA_0005132 def: "The peritoneum that covers the external surfaces of most abdominal organs." [Wikipedia:Visceral_peritoneum, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core xref: FMA:14703 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5f/Gray1040.png/200px-Gray1040.png xref: OG:0001528 xref: SCTID:362702003 xref: TAO:0005132 xref: ZFA:0005132 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0002358 ! peritoneum [Term] id: UBERON:0001179 name: peritoneal cavity alt_id: UBERON:FMA_14704-MA_0000054 def: "Cavity of serous sac surrounded by the peritoneum.[FMA]" [FMA:FMA, Wikipedia:Peritoneal_cavity] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "cavitas peritonealis" RELATED [BTO:0001782] xref: BTO:0001782 xref: EHDAA2:0001446 xref: EMAPA:18452 xref: EMAPA:18454 xref: EMAPA:18461 xref: FMA:14704 xref: GAID:24 xref: MA:0000054 xref: MESH:A.01.047.025.600.678 xref: ncithesaurus:Peritoneal_Cavity xref: OG:0000852 xref: SCTID:181616008 is_a: UBERON:0002323 ! body cavity relationship: develops_from UBERON:0003887 {source="Wikipedia"} ! intraembryonic coelom relationship: surrounded_by UBERON:0002358 ! peritoneum [Term] id: UBERON:0001180 name: superior recess of lesser sac alt_id: UBERON:FMA_14708-MA_0000447 comment: This class was created automatically from a combination of ontologies synonym: "omental bursa superior recess" EXACT [] synonym: "recessus superior bursae omentalis" EXACT [FMA:14708, FMA:TA] synonym: "recessus superior omentalis" EXACT [] synonym: "superior omental bursa" EXACT [] synonym: "superior recess of omental bursa" EXACT [] xref: EHDAA:2343 xref: FMA:14708 xref: MA:0000447 xref: SCTID:263190002 is_a: UBERON:0002553 ! anatomical cavity is_a: UBERON:0005252 ! implied link automatically realized ! omental bursa cavity relationship: part_of UBERON:0001341 ! lesser sac [Term] id: UBERON:0001181 name: inferior recess of lesser sac alt_id: UBERON:FMA_14709-MA_0000446 comment: This class was created automatically from a combination of ontologies synonym: "inferior omental bursa" EXACT [] synonym: "inferior recess of omental bursa" EXACT [] synonym: "omental bursa inferior recess" EXACT [] synonym: "recessus inferior bursae omentalis" EXACT [FMA:14709, FMA:TA] synonym: "recessus inferior omentalis" EXACT [] xref: EHDAA:6083 xref: FMA:14709 xref: MA:0000446 xref: SCTID:263261002 is_a: UBERON:0002553 ! anatomical cavity is_a: UBERON:0005252 ! implied link automatically realized ! omental bursa cavity relationship: part_of UBERON:0001341 ! lesser sac [Term] id: UBERON:0001182 name: superior mesenteric artery alt_id: UBERON:FMA_14749-MA_0002005 def: "In human anatomy, the superior mesenteric artery (SMA) arises from the anterior surface of the abdominal aorta, just inferior to the origin of the celiac trunk, and supplies the intestine from the lower part of the duodenum through two-thirds of the transverse colon, as well as the pancreas. [WP,unvetted]." [Wikipedia:Superior_mesenteric_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "arteria mesenterica superior" RELATED [BTO:0002303] synonym: "superior mesenteric arterial tree" EXACT [] xref: BTO:0002303 xref: EHDAA:3358 xref: EHDAA:5313 xref: EHDAA2:0001949 xref: EMAPA:18619 xref: FMA:14749 xref: GAID:502 xref: galen:SuperiorMesentericArtery xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/68/Gray1099.png/200px-Gray1099.png xref: MA:0002005 xref: MESH:A.07.231.114.565.755 xref: ncithesaurus:Superior_Mesenteric_Artery xref: OG:0000754 xref: OpenCyc:Mx4rwE5KipwpEbGdrcN5Y29ycA xref: SCTID:362048004 is_a: UBERON:0001637 ! artery is_a: UBERON:0004573 ! systemic artery relationship: develops_from UBERON:0006002 {source="Wikipedia"} ! vitelline artery [Term] id: UBERON:0001183 name: inferior mesenteric artery alt_id: UBERON:FMA_14750-MA_0002004 def: "In human anatomy, the inferior mesenteric artery, often abbreviated as IMA, supplies the large intestine from the left colic (or splenic) flexure to the upper part of the rectum, which includes the descending colon, the sigmoid colon, and part of the rectum. Proximally, its territory of distribution overlaps (forms a watershed) with the middle colic artery, and therefore the superior mesenteric artery. The SMA and IMA anastomose via the marginal artery (artery of Drummond). The territory of distribution of the IMA is more or less equivalent to the embryonic hindgut. [WP,unvetted]." [Wikipedia:Inferior_mesenteric_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "arteria mesenterica inferior" RELATED [BTO:0002302] synonym: "inferior mesenteric arterial tree" EXACT [] xref: BTO:0002302 xref: EHDAA:4345 xref: EHDAA2:0000817 xref: EMAPA:18618 xref: FMA:14750 xref: GAID:501 xref: galen:InferiorMesentericArtery xref: MA:0002004 xref: MESH:A.07.231.114.565.510 xref: ncithesaurus:Inferior_Mesenteric_Artery xref: OG:0001116 xref: OpenCyc:Mx4rv-t-S5wpEbGdrcN5Y29ycA xref: SCTID:181341006 is_a: UBERON:0004573 ! systemic artery relationship: supplies UBERON:0000059 ! large intestine [Term] id: UBERON:0001184 name: renal artery alt_id: UBERON:FMA_14751-MA_0002035-ZFA_0000420 def: "The renal arteries normally arise off the side of the abdominal aorta, immediately below the superior mesenteric artery, and supply the kidneys with blood. Each is directed across the crus of the diaphragm, so as to form nearly a right angle with the aorta. The renal arteries carry a large portion of total blood flow to the kidneys. Up to a third of total cardiac output can pass through the renal arteries to be filtered by the kidneys. The arterial supply of the kidneys is variable and there may be one or more renal arteries supplying each kidney. It is located above the renal vein. It has a radius of approximately 0.25cm, 0.26 cm at the root. The measured mean diameter can differ depending on the imaging method used. For example, the diameter was found to be 5.04 ± 0.74 mm using ultrasound, but 5.68 ± 1.19 mm using angiography. [WP,unvetted]." [Wikipedia:Renal_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "renal arterial tree" EXACT [] synonym: "renal arteries" RELATED [] xref: AAO:0010223 xref: BTO:0001165 xref: EFO:0002552 xref: EHDAA:5321 xref: EHDAA:8594 xref: EHDAA2:0001600 xref: EHDAA2:0004100 xref: EMAPA:17862 xref: EMAPA:28373 xref: FMA:14751 xref: GAID:507 xref: galen:RenalArtery xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/da/Gray1120.png/200px-Gray1120.png xref: MA:0002035 xref: MESH:A.07.231.114.745 xref: ncithesaurus:Renal_Artery xref: OpenCyc:Mx4rveOFHpwpEbGdrcN5Y29ycA xref: SCTID:181339005 xref: TAO:0000420 xref: ZFA:0000420 is_a: UBERON:0004573 ! systemic artery relationship: supplies UBERON:0002113 intersection_of: UBERON:0001637 ! artery intersection_of: supplies UBERON:0002113 ! kidney [Term] id: UBERON:0001185 name: right renal artery alt_id: UBERON:FMA_14752-MA_0002037 def: "The renal arteries normally arise off the side of the abdominal aorta, immediately below the superior mesenteric artery, and supply the kidneys with blood. Each is directed across the crus of the diaphragm, so as to form nearly a right angle with the aorta. The renal arteries carry a large portion of total blood flow to the kidneys. Up to a third of total cardiac output can pass through the renal arteries to be filtered by the kidneys. The arterial supply of the kidneys is variable and there may be one or more renal arteries supplying each kidney. It is located above the renal vein. It has a radius of approximately 0.25cm, 0.26 cm at the root. The measured mean diameter can differ depending on the imaging method used. For example, the diameter was found to be 5.04 ± 0.74 mm using ultrasound, but 5.68 ± 1.19 mm using angiography. [WP,unvetted]." [Wikipedia:Right_renal_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "right renal arterial tree" EXACT [] xref: FMA:14752 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/da/Gray1120.png/200px-Gray1120.png xref: MA:0002037 xref: ncithesaurus:Right_Renal_Artery xref: OpenCyc:Mx4rtW8I0KgEEdudWQACs5b6Bw xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rveOFHpwpEbGdrcN5Y29ycA xref: SCTID:36800007 is_a: UBERON:0001184 ! implied link automatically realized ! renal artery relationship: supplies UBERON:0004539 intersection_of: UBERON:0001184 ! renal artery intersection_of: supplies UBERON:0004539 ! right kidney [Term] id: UBERON:0001186 name: left renal artery alt_id: UBERON:FMA_14753-MA_0002036 comment: This class was created automatically from a combination of ontologies synonym: "left renal arterial tree" EXACT [] xref: FMA:14753 xref: MA:0002036 xref: ncithesaurus:Left_Renal_Artery xref: OpenCyc:Mx4rtW8I0agEEdudWQACs5b6Bw xref: OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rveOFHpwpEbGdrcN5Y29ycA xref: SCTID:19215005 is_a: UBERON:0001184 ! implied link automatically realized ! renal artery relationship: supplies UBERON:0004538 intersection_of: UBERON:0001184 ! renal artery intersection_of: supplies UBERON:0004538 ! left kidney [Term] id: UBERON:0001187 name: testicular artery alt_id: UBERON:FMA_14758-MA_0002063 def: "The testicular artery (the male gonadal artery, also called the internal spermatic arteries in older texts) is a branch of the abdominal aorta that supplies blood to the testis. It is a paired artery, with one for each of the testes. It is the male equivalent of the ovarian artery. Because the testis is found in a different location than that of its female equivalent, it has a different course than the ovarian artery. They are two slender vessels of considerable length, and arise from the front of the aorta a little below the renal arteries. Each passes obliquely downward and lateralward behind the peritoneum, resting on the Psoas major, the right spermatic lying in front of the inferior vena cava and behind the middle colic and ileocolic arteries and the terminal part of the ileum, the left behind the left colic and sigmoid arteries and the iliac colon. Each crosses obliquely over the ureter and the lower part of the external iliac artery to reach the abdominal inguinal ring, through which it passes, and accompanies the other constituents of the spermatic cord along the inguinal canal to the scrotum, where it becomes tortuous, and divides into several branches. Two or three of these accompany the ductus deferens, and supply the epididymis, anastomosing with the artery of the ductus deferens; others pierce the back part of the tunica albuginea, and supply the substance of the testis. The internal spermatic artery supplies one or two small branches to the ureter, and in the inguinal canal gives one or two twigs to the Cremaster. [WP,unvetted]." [Wikipedia:Testicular_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "testicular arterial tree" EXACT [] xref: EMAPA:18621 xref: FMA:14758 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/af/Gray531.png/200px-Gray531.png xref: MA:0002063 xref: SCTID:244281003 is_a: UBERON:0004573 ! systemic artery relationship: supplies UBERON:0000473 intersection_of: UBERON:0001637 ! artery intersection_of: supplies UBERON:0000473 ! testis [Term] id: UBERON:0001188 name: right testicular artery alt_id: UBERON:FMA_14759-MA_0002042 comment: This class was created automatically from a combination of ontologies synonym: "right spermatic artery" EXACT [] synonym: "trunk of right testicular arterial tree" EXACT [] xref: FMA:14759 xref: MA:0002042 xref: ncithesaurus:Right_Spermatic_Artery is_a: UBERON:0001187 ! implied link automatically realized ! testicular artery relationship: supplies UBERON:0004534 intersection_of: UBERON:0001187 ! testicular artery intersection_of: supplies UBERON:0004534 ! right testicle relationship: supplies UBERON:0001222 ! right ureter [Term] id: UBERON:0001189 name: left testicular artery alt_id: UBERON:FMA_14760-MA_0002041 comment: This class was created automatically from a combination of ontologies synonym: "left spermatic artery" EXACT [] synonym: "trunk of left testicular arterial tree" EXACT [] xref: FMA:14760 xref: MA:0002041 xref: ncithesaurus:Left_Spermatic_Artery is_a: UBERON:0001187 ! implied link automatically realized ! testicular artery relationship: supplies UBERON:0004533 intersection_of: UBERON:0001187 ! testicular artery intersection_of: supplies UBERON:0004533 ! left testicle relationship: supplies UBERON:0001223 ! left ureter [Term] id: UBERON:0001190 name: ovarian artery alt_id: UBERON:FMA_14761-MA_0002012 def: "In human anatomy, the ovarian artery is a blood vessel that supplies oxygenated blood to the ovary. It arises from the abdominal aorta below the renal artery, and does not pass out of the abdominal cavity. It can be found in the suspensory ligament of the ovary. [WP,unvetted]." [Wikipedia:Ovarian_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "ovarian arterial tree" EXACT [] xref: EMAPA:18620 xref: FMA:14761 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ae/Gray1170.png/200px-Gray1170.png xref: MA:0002012 xref: ncithesaurus:Ovarian_Artery xref: OpenCyc:Mx4rwOa9PZwpEbGdrcN5Y29ycA xref: SCTID:244280002 is_a: UBERON:0001637 ! artery is_a: UBERON:0004573 ! systemic artery relationship: overlaps UBERON:0000992 ! female gonad [Term] id: UBERON:0001191 name: common iliac artery alt_id: UBERON:FMA_14764-MA_0001972 def: "The common iliac arteries are two large arteries, about 4cm long in adults but more than a centimetre in diameter, that originate from the aortic bifurcation. The arteries run inferolaterally, along the medial border of the psoas muscles to the pelvic brim, where they bifurcate into the external iliac artery and internal iliac artery. The common iliac artery, and all of its branches, exist as paired structures (that is to say, there is one on the left side and one on the right). The distribution of the common iliac artery is basically the pelvis and lower limb on the corresponding side. Both common iliac arteries are accompanied along their course by common iliac veins. [WP,unvetted]." [Wikipedia:Common_iliac_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "common iliac arterial tree" EXACT [] xref: BTO:0004665 xref: EHDAA:2553 xref: EHDAA2:0000311 xref: EMAPA:17310 xref: FMA:14764 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6e/Iliac_artery_bifurcation_and_aorta.PNG/200px-Iliac_artery_bifurcation_and_aorta.PNG xref: MA:0001972 xref: ncithesaurus:Common_Iliac_Artery xref: OpenCyc:Mx4rvkZ7ZpwpEbGdrcN5Y29ycA xref: SCTID:362050007 xref: XAO:0000361 is_a: UBERON:0004573 ! systemic artery [Term] id: UBERON:0001192 name: left gastric artery alt_id: UBERON:FMA_14768-MA_0001961 def: "In human anatomy, the left gastric artery arises from the celiac artery, and runs along the superior portion of the lesser curvature of the stomach. Branches also supply the lower esophagus. The left gastric artery anastomoses with the right gastric artery, which supplies the inferior portion. [WP,unvetted]." [Wikipedia:Left_gastric_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "gastric artery" EXACT [] xref: FMA:14768 xref: galen:LeftGastricArtery xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/65/Gray532.png/200px-Gray532.png xref: MA:0001961 xref: ncithesaurus:Gastric_Artery xref: OpenCyc:Mx4rwMjqKZwpEbGdrcN5Y29ycA xref: SCTID:244267000 is_a: UBERON:0001637 ! artery relationship: part_of UBERON:0001640 ! celiac artery relationship: supplies UBERON:0000945 ! stomach [Term] id: UBERON:0001193 name: hepatic artery alt_id: UBERON:FMA_14769-MA_0001963 def: "." [Wikipedia:Hepatic_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core xref: BTO:0004307 xref: EMAPA:17859 xref: FMA:14769 xref: GAID:496 xref: galen:HepaticArtery xref: MA:0001963 xref: MESH:A.07.231.114.407 xref: ncithesaurus:Hepatic_Artery xref: OpenCyc:Mx4rvzKtFpwpEbGdrcN5Y29ycA xref: SCTID:76015000 xref: ZFA:0005161 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001637 ! artery is_a: UBERON:0003497 ! implied link automatically realized ! abdomen blood vessel is_a: UBERON:0005911 ! implied link automatically realized ! endo-epithelium relationship: part_of UBERON:0002107 intersection_of: UBERON:0001637 ! artery intersection_of: part_of UBERON:0002107 ! liver relationship: part_of UBERON:0002107 ! liver [Term] id: UBERON:0001194 name: splenic artery alt_id: UBERON:FMA_14773-MA_0001991 def: "In anatomy, the splenic artery (in the past called the lienal artery) is the blood vessel that supplies oxygenated blood to the spleen. It branches from the celiac artery, and follows a course superior to the pancreas. [WP,unvetted]." [Wikipedia:Splenic_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "lienal artery" EXACT [] xref: EMAPA:19216 xref: FMA:14773 xref: GAID:510 xref: galen:SplenicArtery xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a2/Gray1188.png/200px-Gray1188.png xref: MA:0001991 xref: MESH:A.07.231.114.814 xref: ncithesaurus:Splenic_Artery xref: OpenCyc:Mx4rv0cb2ZwpEbGdrcN5Y29ycA xref: SCTID:244266009 is_a: UBERON:0001637 ! artery relationship: part_of UBERON:0001640 ! celiac artery [Term] id: UBERON:0001195 name: inferior pancreaticoduodenal artery alt_id: UBERON:FMA_14805-MA_0002014 def: "The inferior pancreaticoduodenal artery is a branch of the superior mesenteric artery or from its first intestinal branch, opposite the upper border of the inferior part of the duodenum. It courses to the right between the head of the pancreas and duodenum, and then ascends to anastomose with the anterior and posterior superior pancreaticoduodenal artery. It distributes branches to the head of the pancreas and to the descending and inferior parts of the duodenum. [WP,unvetted]." [Wikipedia:Inferior_pancreaticoduodenal_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "inferior pancreatico-duodenal artery" EXACT [] xref: FMA:14805 xref: MA:0002014 xref: ncithesaurus:Inferior_Pancreatico-duodenal_artery xref: SCTID:244273004 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001196 name: middle colic artery alt_id: UBERON:FMA_14810-MA_0002007 def: "The middle colic artery is a branch of the superior mesenteric artery that mostly supplies the transverse colon. It arises just below the pancreas, and, passing downward and forward between the layers of the transverse mesocolon, divides into two branches: right and left. The right branch anastomoses with the right colic artery The left branch anastomoses with the left colic artery, a branch of the inferior mesenteric artery. The arches thus formed are placed about two fingers’ breadth from the transverse colon, to which they distribute branches. [WP,unvetted]." [Wikipedia:Middle_colic_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:14810 xref: galen:MiddleColicArtery xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Gray537.png/200px-Gray537.png xref: MA:0002007 xref: ncithesaurus:Middle_Colic_Artery xref: SCTID:244276007 is_a: UBERON:0001637 ! artery relationship: part_of UBERON:0001182 ! superior mesenteric artery relationship: supplies UBERON:0000059 ! large intestine [Term] id: UBERON:0001197 name: ileocolic artery alt_id: UBERON:FMA_14815-MA_0001970 def: "The Ileocolic Artery is the lowest branch arising from the concavity of the superior mesenteric artery. It passes downward and to the right behind the peritoneum toward the right iliac fossa, where it divides into a superior and an inferior branch; the inferior anastomoses with the end of the superior mesenteric artery, the superior with the right colic artery. Supplies the cecum, ileum, and appendix. [WP,unvetted]." [Wikipedia:Ileocolic_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:14815 xref: galen:IleocolicArtery xref: MA:0001970 xref: ncithesaurus:Ileo-colic_Artery xref: SCTID:244279000 is_a: UBERON:0001637 ! artery relationship: part_of UBERON:0001182 ! superior mesenteric artery [Term] id: UBERON:0001198 name: superior suprarenal artery alt_id: UBERON:FMA_14863-MA_0002057 def: "Each (left and right) superior suprarenal artery is a branch of the inferior phrenic artery on that side of the body. The left and right phrenic arteries supply the diaphragm, and come off the aorta. [WP,unvetted]." [Wikipedia:Superior_suprarenal_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "superior adrenal branch of inferior phrenic artery" EXACT [] synonym: "superior suprarenal branch of inferior phrenic artery" EXACT [] xref: FMA:14863 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/61/Gray1121.png/200px-Gray1121.png xref: MA:0002057 xref: ncithesaurus:Superior_Suprarenal_Artery xref: SCTID:303424001 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001199 name: mucosa of stomach alt_id: UBERON:FMA_14907-MA_0002683 def: "The gastric mucosa is the mucous membrane layer of the stomach which contains the glands and the gastric pits. In men it is about 1 mm thick and its surface is smooth, soft, and velvety. It consists of epithelium, lamina propria, and the muscularis mucosae. In its fresh state, it is of a pinkish tinge at the pyloric end and of a red or reddish-brown color over the rest of its surface. In infancy it is of a brighter hue, the vascular redness being more marked. It is thin at the cardiac extremity, but thicker toward the pylorus. During the contracted state of the organ it is thrown into numerous plaits or rugae, which, for the most part, have a longitudinal direction, and are most marked toward the pyloric end of the stomach, and along the greater curvature. These folds are entirely obliterated when the organ becomes distended. When examined with a lens, the inner surface of the mucous membrane presents a peculiar honeycomb appearance from being covered with funnel-like depressions or foveolae of a polygonal or hexagonal form, which vary from 0.12 to 0.25 mm. in diameter. These are the ducts of the gastric glands, and at the bottom of each may be seen one or more minute orifices, the openings of the gland tubes. Gastric glands are simple or branched tubular glands that emerge on the deeper part of the gastric foveola, inside the gastric areas and outlined by the folds of the mucosa. There are three types of glands: cardiac glands (in the proximal part of the stomach), oxyntic glands (the dominating type of gland), and pyloric glands. The cardiac glands mainly contain mucus producing cells. The bottom part of the oxyntic glands is dominated by zymogen (chief) cells that produce pepsinogen (an inactive precursor of the pepsin enzyme). Parietal cells, which secrete hydrochloric acid are scattered in the glands, with most of them in the middle part. The upper part of the glands consist of mucous neck cells; in this part the dividing cells are seen. The pyloric glands contain mucus-secreting cells. Several types of endocrine cells are found in all regions of the gastric mucosa. In the pyloric glands contain gastrin producing cells (G cells); this hormone stimulates acid production from the parietal cells. ECL (enterochromaffine-like) cells, found in the oxyntic glands release histamine, which also is a powerful stimulant of the acid secretion. The A cells produce glucagon, which mobilizes the hepatic glycogen, and the enterochromaffin cells that produce serotonin, which stimulates the contraction of the smooth muscles. The surface of the mucous membrane is covered by a single layer of columnar epithelium . This epithelium commences very abruptly at the cardiac orifice, where there is a sudden transition from the stratified epithelium of the esophagus. The epithelial lining of the gland ducts is of the same character and is continuous with the general epithelial lining of the stomach. [WP,unvetted]." [Wikipedia:Gastric_mucosa] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "gastric mucosa" EXACT [] synonym: "gastric mucous membrane" EXACT [] synonym: "Magenschleimhaut" RELATED [BTO:0001308] synonym: "mucosa of organ of stomach" EXACT [OBOL:automatic] synonym: "mucosa of organ of ventriculus" EXACT [OBOL:automatic] synonym: "mucosa of ventriculus" EXACT [OBOL:automatic] synonym: "mucous membrane of stomach" EXACT [] synonym: "mucous membrane of ventriculus" EXACT [OBOL:automatic] synonym: "organ mucosa of stomach" EXACT [OBOL:automatic] synonym: "organ mucosa of ventriculus" EXACT [OBOL:automatic] synonym: "stomach mucosa" EXACT [] synonym: "stomach mucosa of organ" EXACT [OBOL:automatic] synonym: "stomach mucous membrane" EXACT [OBOL:automatic] synonym: "stomach organ mucosa" EXACT [OBOL:automatic] synonym: "tunica mucosa (gaster)" EXACT [] synonym: "tunica mucosa gastricae" EXACT [FMA:14907, FMA:TA] synonym: "tunica mucosa gastris" RELATED [BTO:0001308] synonym: "ventriculus mucosa" EXACT [OBOL:automatic] synonym: "ventriculus mucosa of organ" EXACT [OBOL:automatic] synonym: "ventriculus mucous membrane" EXACT [OBOL:automatic] synonym: "ventriculus organ mucosa" EXACT [OBOL:automatic] xref: BTO:0001308 xref: FMA:14907 xref: GAID:321 xref: galen:GastricMucosa xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Illu_stomach2.jpg/200px-Illu_stomach2.jpg xref: MA:0002683 xref: MESH:A.03.492.766.440 xref: ncithesaurus:Gastric_Mucosa xref: OpenCyc:Mx8NhB4rvcD6KJwpEbGdrcN5Y29ycB4rvmKNOpwpEbGdrcN5Y29ycB4rvVj5FpwpEbGdrcN5Y29ycB4rvVjlqpwpEbGdrcN5Y29ycA xref: SCTID:362131005 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004786 ! implied link automatically realized ! gastrointestinal system mucosa is_a: UBERON:0009034 ! implied link automatically realized ! stomach region relationship: part_of UBERON:0000945 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0000945 ! stomach relationship: part_of UBERON:0001167 ! wall of stomach [Term] id: UBERON:0001200 name: submucosa of stomach alt_id: UBERON:FMA_14908-MA_0002685 def: "A submucosa that is part of a stomach [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "gastric submucosa" EXACT [] synonym: "stomach submucosa" EXACT [] synonym: "submucosa of ventriculus" EXACT [OBOL:automatic] synonym: "tela submucosa (gaster)" EXACT [] synonym: "ventriculus submucosa" EXACT [OBOL:automatic] xref: BTO:0002110 xref: FMA:14908 xref: MA:0002685 xref: ncithesaurus:Gastric_Submucosa xref: SCTID:52459002 is_a: UBERON:0000009 ! submucosa is_a: UBERON:0009034 ! implied link automatically realized ! stomach region relationship: part_of UBERON:0000945 intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0000945 ! stomach relationship: part_of UBERON:0001167 ! wall of stomach [Term] id: UBERON:0001201 name: serosa of stomach alt_id: UBERON:FMA_14914-MA_0001626 def: "A serous membrane that is part of a wall of stomach [Obol]." [OBOL:automatic] comment: TODO - check serosa/peritoneum synonym: "anatomical wall of stomach serosa" EXACT [OBOL:automatic] synonym: "anatomical wall of stomach serous membrane" EXACT [OBOL:automatic] synonym: "anatomical wall of ventriculus serosa" EXACT [OBOL:automatic] synonym: "anatomical wall of ventriculus serous membrane" EXACT [OBOL:automatic] synonym: "gastric serosa" RELATED [] synonym: "gastric wall serosa" EXACT [OBOL:automatic] synonym: "gastric wall serous membrane" EXACT [OBOL:automatic] synonym: "serosa of anatomical wall of stomach" EXACT [OBOL:automatic] synonym: "serosa of anatomical wall of ventriculus" EXACT [OBOL:automatic] synonym: "serosa of gastric wall" EXACT [OBOL:automatic] synonym: "serosa of stomach anatomical wall" EXACT [OBOL:automatic] synonym: "serosa of stomach wall" EXACT [OBOL:automatic] synonym: "serosa of ventriculus anatomical wall" EXACT [OBOL:automatic] synonym: "serosa of ventriculus wall" EXACT [OBOL:automatic] synonym: "serosa of wall of stomach" EXACT [OBOL:automatic] synonym: "serosa of wall of ventriculus" EXACT [OBOL:automatic] synonym: "serous coat of stomach" EXACT [] synonym: "serous membrane of anatomical wall of stomach" EXACT [OBOL:automatic] synonym: "serous membrane of anatomical wall of ventriculus" EXACT [OBOL:automatic] synonym: "serous membrane of gastric wall" EXACT [OBOL:automatic] synonym: "serous membrane of stomach anatomical wall" EXACT [OBOL:automatic] synonym: "serous membrane of stomach wall" EXACT [OBOL:automatic] synonym: "serous membrane of ventriculus anatomical wall" EXACT [OBOL:automatic] synonym: "serous membrane of ventriculus wall" EXACT [OBOL:automatic] synonym: "serous membrane of wall of stomach" EXACT [OBOL:automatic] synonym: "serous membrane of wall of ventriculus" EXACT [OBOL:automatic] synonym: "stomach anatomical wall serosa" EXACT [OBOL:automatic] synonym: "stomach anatomical wall serous membrane" EXACT [OBOL:automatic] synonym: "stomach serosa" EXACT [] synonym: "stomach wall serosa" EXACT [OBOL:automatic] synonym: "stomach wall serous membrane" EXACT [OBOL:automatic] synonym: "tunica serosa (gaster)" EXACT [] synonym: "tunica serosa gastricae" EXACT [FMA:14914, FMA:TA] synonym: "ventriculus anatomical wall serosa" EXACT [OBOL:automatic] synonym: "ventriculus anatomical wall serous membrane" EXACT [OBOL:automatic] synonym: "ventriculus wall serosa" EXACT [OBOL:automatic] synonym: "ventriculus wall serous membrane" EXACT [OBOL:automatic] synonym: "visceral peritoneum of stomach" EXACT [] synonym: "wall of stomach serosa" EXACT [OBOL:automatic] synonym: "wall of stomach serous membrane" EXACT [OBOL:automatic] synonym: "wall of ventriculus serosa" EXACT [OBOL:automatic] synonym: "wall of ventriculus serous membrane" EXACT [OBOL:automatic] xref: FMA:14914 xref: MA:0001626 xref: SCTID:1353004 is_a: UBERON:0000042 ! serous membrane is_a: UBERON:0004782 ! implied link automatically realized ! gastrointestinal system serosa is_a: UBERON:0009034 ! implied link automatically realized ! stomach region relationship: part_of UBERON:0001167 intersection_of: UBERON:0000042 ! serous membrane intersection_of: part_of UBERON:0001167 ! wall of stomach relationship: part_of UBERON:0001167 ! wall of stomach [Term] id: UBERON:0001202 name: pyloric sphincter alt_id: UBERON:FMA_14916-XAO_0000457 def: "Sphincter muscle that is part of the pyloric region of the stomach." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "pyloric valve" EXACT [[Wikipedia:Pylorus] xref: AAO:0011093 xref: EMAPA:19251 xref: FMA:14916 xref: MA:0002952 xref: ncithesaurus:Pyloric_Sphincter xref: OG:0001466 xref: OpenCyc:Mx4rvly2ZZwpEbGdrcN5Y29ycA xref: SCTID:268073008 xref: XAO:0000457 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004590 ! implied link automatically realized ! sphincter muscle relationship: part_of UBERON:0001166 intersection_of: UBERON:0004590 ! sphincter muscle intersection_of: part_of UBERON:0001166 ! pylorus [Term] id: UBERON:0001203 name: muscularis mucosae of stomach alt_id: UBERON:FMA_14924-MA_0002684 comment: This class was created automatically from a combination of ontologies synonym: "lamina muscularis mucosae (tunica mucosa)(gaster)" EXACT [] synonym: "lamina muscularis of gastric mucosa" EXACT [] synonym: "muscular coat of stomach" EXACT [] synonym: "stomach muscularis mucosa" EXACT [] synonym: "tunica muscularis gastricae" EXACT [FMA:14924, FMA:TA] xref: FMA:14924 xref: MA:0002684 xref: SCTID:64551004 is_a: UBERON:0004222 ! implied link automatically realized ! stomach smooth muscle is_a: UBERON:0006676 ! implied link automatically realized ! muscularis mucosa relationship: part_of UBERON:0001199 intersection_of: UBERON:0006676 ! muscularis mucosa intersection_of: part_of UBERON:0001199 ! mucosa of stomach [Term] id: UBERON:0001204 name: mucosa of small intestine alt_id: UBERON:FMA_14933-MA_0002686 def: "A mucosa that is part of a small intestine [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "mucosa of organ of small bowel" EXACT [OBOL:automatic] synonym: "mucosa of organ of small intestine" EXACT [OBOL:automatic] synonym: "mucosa of small bowel" EXACT [OBOL:automatic] synonym: "mucous membrane of small bowel" EXACT [OBOL:automatic] synonym: "mucous membrane of small intestine" EXACT [] synonym: "organ mucosa of small bowel" EXACT [OBOL:automatic] synonym: "organ mucosa of small intestine" EXACT [OBOL:automatic] synonym: "small bowel mucosa" EXACT [OBOL:automatic] synonym: "small bowel mucosa of organ" EXACT [OBOL:automatic] synonym: "small bowel mucous membrane" EXACT [OBOL:automatic] synonym: "small bowel organ mucosa" EXACT [OBOL:automatic] synonym: "small intestinal mucosa" EXACT [] synonym: "small intestine mucosa" EXACT [] synonym: "small intestine mucosa of organ" EXACT [OBOL:automatic] synonym: "small intestine mucous membrane" EXACT [] synonym: "small intestine organ mucosa" EXACT [OBOL:automatic] synonym: "tunica mucosa (intestinum tenue)" EXACT [] synonym: "tunica mucosa intestini tenuis" EXACT [FMA:14933, FMA:TA] xref: BTO:0001259 xref: FMA:14933 xref: MA:0002686 xref: ncithesaurus:Small_Intestinal_Mucosa xref: SCTID:362144000 is_a: UBERON:0001242 ! intestinal mucosa relationship: part_of UBERON:0002108 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0002108 ! small intestine relationship: part_of UBERON:0001168 ! wall of small intestine relationship: part_of UBERON:0001242 ! intestinal mucosa [Term] id: UBERON:0001205 name: submucosa of small intestine alt_id: UBERON:FMA_14934-MA_0001562 def: "." [Wikipedia:Small_intestinal_submucosa] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "small bowel submucosa" EXACT [OBOL:automatic] synonym: "small intestinal submucosa" EXACT [] synonym: "small intestine submucosa" EXACT [] synonym: "submucosa of small bowel" EXACT [OBOL:automatic] synonym: "tela submucosa (intestinum tenue)" EXACT [] xref: FMA:14934 xref: MA:0001562 xref: ncithesaurus:Small_Intestinal_Submucosa xref: SCTID:691000 is_a: UBERON:0000009 ! submucosa is_a: UBERON:0009566 ! implied link automatically realized ! intestinal submucosa relationship: part_of UBERON:0002108 intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0002108 ! small intestine relationship: part_of UBERON:0001168 ! wall of small intestine [Term] id: UBERON:0001206 name: serosa of small intestine alt_id: UBERON:FMA_14938-MA_0001558 def: "A serous membrane that is part of a small intestine [Obol]." [OBOL:automatic] comment: TODO - check serosa/peritoneum synonym: "serosa of small bowel" EXACT [OBOL:automatic] synonym: "serous coat of small intestine" EXACT [] synonym: "serous membrane of small bowel" EXACT [OBOL:automatic] synonym: "serous membrane of small intestine" EXACT [OBOL:automatic] synonym: "small bowel serosa" EXACT [OBOL:automatic] synonym: "small bowel serous membrane" EXACT [OBOL:automatic] synonym: "small intestinal serosa" EXACT [] synonym: "small intestine serosa" EXACT [] synonym: "small intestine serous membrane" EXACT [OBOL:automatic] synonym: "tunica serosa (intestinum tenue)" EXACT [] synonym: "tunica serosa intestini tenuis" EXACT [FMA:14938, FMA:TA] synonym: "visceral peritoneum of small intestine" EXACT [] xref: FMA:14938 xref: MA:0001558 xref: SCTID:8266009 is_a: UBERON:0001243 ! serosa of intestine relationship: part_of UBERON:0002108 intersection_of: UBERON:0000042 ! serous membrane intersection_of: part_of UBERON:0002108 ! small intestine relationship: part_of UBERON:0001168 ! wall of small intestine relationship: part_of UBERON:0001243 ! serosa of intestine [Term] id: UBERON:0001207 name: mucosa of large intestine alt_id: UBERON:FMA_14969-MA_0002688 def: "A mucosa that is part of a large intestine [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "large intestinal mucosa" EXACT [] synonym: "large intestine mucosa" EXACT [] synonym: "large intestine mucosa of organ" EXACT [OBOL:automatic] synonym: "large intestine mucous membrane" EXACT [OBOL:automatic] synonym: "large intestine organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of organ of large intestine" EXACT [OBOL:automatic] synonym: "mucous membrane of large intestine" EXACT [] synonym: "organ mucosa of large intestine" EXACT [OBOL:automatic] synonym: "tunica mucosa intestini crassi" EXACT [FMA:14969, FMA:TA] xref: FMA:14969 xref: MA:0002688 xref: ncithesaurus:Large_Intestinal_Mucosa is_a: UBERON:0001242 ! intestinal mucosa relationship: part_of UBERON:0000059 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0000059 ! large intestine relationship: part_of UBERON:0001169 ! wall of large intestine relationship: part_of UBERON:0001242 ! intestinal mucosa [Term] id: UBERON:0001208 name: submucosa of large intestine alt_id: UBERON:FMA_14970-MA_0002690 def: "A submucosa that is part of a large intestine [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "large intestinal submucosa" EXACT [] synonym: "large intestine submucosa" EXACT [] xref: BTO:0002111 xref: FMA:14970 xref: MA:0002690 xref: ncithesaurus:Large_Intestinal_Submucosa is_a: UBERON:0000009 ! submucosa is_a: UBERON:0009566 ! implied link automatically realized ! intestinal submucosa relationship: part_of UBERON:0000059 intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0000059 ! large intestine relationship: part_of UBERON:0001169 ! wall of large intestine [Term] id: UBERON:0001209 name: serosa of large intestine alt_id: UBERON:FMA_14975-MA_0001546 def: "A serous membrane that is part of a large intestine [Obol]." [OBOL:automatic] comment: TODO - check serosa/peritoneum synonym: "large intestinal serosa" EXACT [] synonym: "large intestine serosa" EXACT [] synonym: "large intestine serous membrane" EXACT [OBOL:automatic] synonym: "serous coat of large intestine" EXACT [] synonym: "serous membrane of large intestine" EXACT [OBOL:automatic] synonym: "tunica serosa intestini crassi" EXACT [FMA:14975, FMA:TA] synonym: "visceral peritoneum of large intestine" EXACT [] xref: FMA:14975 xref: MA:0001546 is_a: UBERON:0001243 ! serosa of intestine relationship: part_of UBERON:0000059 intersection_of: UBERON:0000042 ! serous membrane intersection_of: part_of UBERON:0000059 ! large intestine relationship: part_of UBERON:0001169 ! wall of large intestine relationship: part_of UBERON:0001243 ! serosa of intestine [Term] id: UBERON:0001210 name: muscularis mucosae of small intestine alt_id: UBERON:FMA_15051-MA_0002687 comment: This class was created automatically from a combination of ontologies synonym: "lamina muscularis mucosae (tunica mucosa)(intestinum tenue)" EXACT [] synonym: "lamina muscularis of small intestine mucous membrane" EXACT [] synonym: "small intestine muscularis mucosa" EXACT [] xref: FMA:15051 xref: MA:0002687 xref: ncithesaurus:Small_Intestinal_Muscularis_Mucosa xref: SCTID:36401004 is_a: UBERON:0001240 ! implied link automatically realized ! muscularis mucosae of intestine is_a: UBERON:0004239 ! implied link automatically realized ! small intestine smooth muscle relationship: part_of UBERON:0002108 intersection_of: UBERON:0006676 ! muscularis mucosa intersection_of: part_of UBERON:0002108 ! small intestine relationship: part_of UBERON:0001204 ! mucosa of small intestine relationship: part_of UBERON:0001240 ! muscularis mucosae of intestine [Term] id: UBERON:0001211 name: Peyer's patch alt_id: UBERON:FMA_15054-MA_0000137 def: "aggregations of lymphoid tissue that are usually found in the lowest portion of the small intestine ileum in humans; as such, they differentiate the ileum from the duodenum and jejunum // nodular lymphoid structures on the serosal surface of the small intestine." [Wikipedia:Peyer's_patch] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "aggregated lymphoid nodules of small intestine" EXACT [FMA:76466] synonym: "noduli lymphoidei aggregati intestini tenuis" EXACT [FMA:76466, FMA:TA] synonym: "peyer's patches" EXACT [FMA:76466] xref: BTO:0001784 xref: EFO:0001381 xref: EMAPA:19028 xref: FMA:76466 xref: GAID:950 xref: MA:0000137 xref: MESH:A.10.549.598 is_a: UBERON:0001962 ! gut-associated lymphoid tissue relationship: part_of UBERON:0000160 ! intestine [Term] id: UBERON:0001212 name: duodenal gland alt_id: UBERON:FMA_15060-MA_0001551 def: "compound tubular submucosal glands found in that portion of the duodenum which is above the hepatopancreatic sphincter (Sphincter of Oddi). The main function of these glands is to produce a mucus-rich alkaline secretion (containing bicarbonate)[WP]." [Wikipedia:Brunner's_glands] comment: This class was created automatically from a combination of ontologies subset: organ_slim subset: uberon_slim synonym: "Brunner's gland" EXACT [FMA:15060] synonym: "gland of Brunner" EXACT [FMA:15060] synonym: "glandula duodenales" RELATED [BTO:0002376] synonym: "glandula duodenales Brunneri" RELATED [BTO:0002376] xref: BTO:0002376 xref: FMA:15060 xref: GAID:314 xref: MA:0001551 xref: MESH:A.03.492.411.620.270.322 xref: ncithesaurus:Brunner_s_Gland xref: SCTID:41298001 is_a: UBERON:0000333 ! implied link automatically realized ! intestinal gland is_a: UBERON:0002365 ! implied link automatically realized ! exocrine gland is_a: UBERON:0002530 ! gland relationship: part_of UBERON:0001204 ! mucosa of small intestine relationship: part_of UBERON:0002330 ! exocrine system [Term] id: UBERON:0001213 name: intestinal villus alt_id: UBERON:FMA_15072-ZFA_0005125 def: "The entire digestive tract is lined by well developed villi, which are longest in the intestinal bulb and decrease progressively in size towards the caudal end of the intestine. No crypts are present, but, the regions between the villi, the intervillus pockets, have a crypt-like function. Cells are produced in the intervillus pockets and shed from the villus tips.Crosnier et al. 2005" [Wikipedia:Intestinal_villus, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "villus" EXACT [BTO:0003121] synonym: "villus intestinalis (intestinum tenue)" EXACT [] xref: BTO:0003121 xref: FMA:15072 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/38/Small_intestine_low_mag.jpg/200px-Small_intestine_low_mag.jpg xref: ncithesaurus:Villus xref: SCTID:23230007 xref: TAO:0005125 xref: ZFA:0005125 is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure is_a: UBERON:0004923 ! organ component layer relationship: part_of UBERON:0001242 ! intestinal mucosa [Term] id: UBERON:0001214 name: pancreatic tributary of splenic vein alt_id: UBERON:FMA_15388-MA_0002189 def: "The pancreatic veins consist of several small vessels which drain the body and tail of the pancreas, and open into the trunk of the great pancreatic vein. [WP,unvetted]." [Wikipedia:Pancreatic_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "pancreatic vein" EXACT [] xref: FMA:15388 xref: MA:0002189 xref: ncithesaurus:Pancreatic_Vein xref: SCTID:264492008 is_a: UBERON:0002017 ! portal vein relationship: tributary_of UBERON:0003713 {source="FMA/obol"} ! splenic vein [Term] id: UBERON:0001215 name: inferior mesenteric vein alt_id: UBERON:FMA_15391-MA_0002178 def: "In human anatomy, the inferior mesenteric vein (IMV) is a blood vessel that drains blood from the large intestine. It usually terminates when reaching the splenic vein, which goes on to form the portal vein with the superior mesenteric vein (SMV). Anatomical variations include the IMV draining into the confluence of the SMV and splenic vein and the IMV draining in the SMV. The IMV lies to the right of the similarly name artery, the inferior mesenteric artery, which originates from the abdominal aorta. [WP,unvetted]." [Wikipedia:Inferior_mesenteric_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "lower mesenteric vein" RELATED [BTO:0002782] xref: BTO:0002782 xref: EHDAA:8712 xref: EHDAA2:0000819 xref: EMAPA:18642 xref: FMA:15391 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/Gray591.png/200px-Gray591.png xref: MA:0002178 xref: ncithesaurus:Inferior_Mesenteric_Vein xref: OG:0001118 xref: OpenCyc:Mx4rvcV53ZwpEbGdrcN5Y29ycA xref: SCTID:281055007 is_a: UBERON:0005617 ! mesenteric vein relationship: tributary_of UBERON:0003713 {source="FMA/obol"} ! splenic vein [Term] id: UBERON:0001216 name: jejunal vein alt_id: UBERON:FMA_15402-MA_0002153 def: "The jejunal veins are tributaries of the superior mesenteric vein. [WP,unvetted]." [Wikipedia:Jejunal_veins] comment: This class was created automatically from a combination of ontologies xref: FMA:15402 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/Gray591.png/200px-Gray591.png xref: MA:0002153 is_a: UBERON:0002017 ! portal vein relationship: part_of UBERON:0001138 ! superior mesenteric vein relationship: tributary_of UBERON:0001138 {source="FMA/obol"} ! superior mesenteric vein [Term] id: UBERON:0001217 name: ileal vein alt_id: UBERON:FMA_15405-MA_0002140 comment: This class was created automatically from a combination of ontologies xref: FMA:15405 xref: MA:0002140 xref: ncithesaurus:Ileal_Vein is_a: UBERON:0002017 ! portal vein relationship: part_of UBERON:0001138 ! superior mesenteric vein relationship: tributary_of UBERON:0001138 {source="FMA/obol"} ! superior mesenteric vein [Term] id: UBERON:0001218 name: middle colic vein alt_id: UBERON:FMA_15406-MA_0002181 def: "The middle colic vein drains the transverse colon. It is a tributary of the superior mesenteric vein, and follows the path of its corresponding artery, the middle colic artery. [WP,unvetted]." [Wikipedia:Middle_colic_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "vena colica media (intermedia)" EXACT [] xref: FMA:15406 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/Gray591.png/200px-Gray591.png xref: MA:0002181 xref: OpenCyc:Mx4rvywYIpwpEbGdrcN5Y29ycA xref: SCTID:9018004 is_a: UBERON:0002017 ! portal vein relationship: part_of UBERON:0001138 ! superior mesenteric vein relationship: tributary_of UBERON:0001138 {source="FMA/obol"} ! superior mesenteric vein [Term] id: UBERON:0001219 name: ileocolic vein alt_id: UBERON:FMA_15408-MA_0002141 def: "The ileocolic vein is a vein which drains the ileum, colon, and cecum. [WP,unvetted]." [Wikipedia:Ileocolic_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:15408 xref: MA:0002141 xref: ncithesaurus:Ileocolic_Vein xref: SCTID:36208008 is_a: UBERON:0002017 ! portal vein relationship: part_of UBERON:0001138 ! superior mesenteric vein relationship: tributary_of UBERON:0001138 {source="FMA/obol"} ! superior mesenteric vein [Term] id: UBERON:0001220 name: quadratus lumborum alt_id: UBERON:FMA_15569-MA_0002362 def: "The Quadratus lumborum is irregular and quadrilateral in shape, and broader below than above. [WP,unvetted]." [Wikipedia:Quadratus_lumborum] comment: This class was created automatically from a combination of ontologies subset: organ_slim subset: uberon_slim synonym: "muscle of posterior abdominal wall" EXACT [] xref: EMAPA:18524 xref: FMA:15569 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/de/Gray1124.png/200px-Gray1124.png xref: MA:0002362 xref: ncithesaurus:Quadratus_Lumborum xref: OpenCyc:Mx4rvj1wcpwpEbGdrcN5Y29ycA is_a: UBERON:0002378 ! muscle of abdomen [Term] id: UBERON:0001221 name: transversus abdominis alt_id: UBERON:FMA_15570-MA_0002396 def: "The transversus abdominis muscle, also known as the transversalis muscle and transverse abdominal muscle, is a muscle layer of the anterior and lateral abdominal wall which is just deep to (layered below) the internal oblique muscle. It is thought to be a major muscle of the functional core of the human body; although some argue that due to its small cross-sectional area, it cannot generate the forces required to be a prime core stabilizer. [WP,unvetted]." [Wikipedia:Transversus_abdominis] comment: This class was created automatically from a combination of ontologies subset: organ_slim subset: uberon_slim synonym: "musculus transversus abdominis" EXACT [FMA:15570, FMA:TA] synonym: "transverse abdominal" EXACT [] xref: EHDAA:8254 xref: EHDAA2:0002078 xref: EMAPA:18165 xref: FMA:15570 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/32/Illu_trunk_muscles.jpg/200px-Illu_trunk_muscles.jpg xref: MA:0002396 xref: ncithesaurus:Transversus_Abdominis xref: OG:0000845 is_a: UBERON:0002461 ! anterior abdominal wall muscle [Term] id: UBERON:0001222 name: right ureter alt_id: UBERON:FMA_15571-MA_0001685 def: "A ureter that is part of a right side of organism [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies xref: FMA:15571 xref: MA:0001685 xref: ncithesaurus:Right_Ureter xref: SCTID:276251000 is_a: UBERON:0000056 ! implied link automatically realized ! ureter relationship: part_of UBERON:0004532 intersection_of: UBERON:0000056 ! ureter intersection_of: part_of UBERON:0004532 ! right side of organism [Term] id: UBERON:0001223 name: left ureter alt_id: UBERON:FMA_15572-MA_0001684 def: "A ureter that is part of a left side of organism [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies xref: FMA:15572 xref: MA:0001684 xref: ncithesaurus:Left_Ureter xref: SCTID:276340002 is_a: UBERON:0000056 ! implied link automatically realized ! ureter relationship: part_of UBERON:0004531 intersection_of: UBERON:0000056 ! ureter intersection_of: part_of UBERON:0004531 ! left side of organism [Term] id: UBERON:0001224 name: renal pelvis alt_id: UBERON:FMA_15575-MA_0000374 def: "funnel-like dilated proximal part of the ureter in the kidney." [Wikipedia:Renal_pelvis] subset: uberon_slim synonym: "kidney pelvis" EXACT [] synonym: "pelvis of ureter" EXACT [] xref: EMAPA:17948 xref: FMA:15575 xref: GAID:426 xref: galen:RenalPelvis xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c0/Illu_kidney2.jpg/200px-Illu_kidney2.jpg xref: MA:0000374 xref: MESH:A.05.810.453.537 xref: ncithesaurus:Renal_Pelvis xref: SCTID:362221007 is_a: UBERON:0000063 ! organ segment is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure disjoint_from: UBERON:0002355 ! pelvis relationship: part_of UBERON:0000056 ! ureter relationship: part_of UBERON:0002113 ! kidney [Term] id: UBERON:0001225 name: cortex of kidney alt_id: UBERON:FMA_15581-MA_0000372 def: "Region of parenchyma of kidney representing the outer portion.[FMA]" [FMA:FMA, Wikipedia:Kidney_cortex] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "cortex renalis" EXACT [FMA:15581, FMA:TA] synonym: "kidney cortex" EXACT [] synonym: "renal cortex" EXACT [] xref: BTO:0001166 xref: EMAPA:17952 xref: FMA:15581 xref: GAID:424 xref: galen:CortexOfKidney xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/69/Illu_kidney.jpg/200px-Illu_kidney.jpg xref: MA:0000372 xref: MESH:A.05.810.453.324 xref: ncithesaurus:Renal_Cortex xref: SCTID:362211004 is_a: UBERON:0001851 ! cortex relationship: part_of UBERON:0002113 intersection_of: UBERON:0001851 ! cortex intersection_of: part_of UBERON:0002113 ! kidney relationship: part_of UBERON:0008987 {source="FMA"} ! renal parenchyma [Term] id: UBERON:0001226 name: major calyx alt_id: UBERON:FMA_15613-MA_0001644 def: "The major calyx, in the kidney, surrounds the apex of the malpighian pyramids. Urine formed in the kidney passes through a papilla at the apex into a minor calyx then into major calyx before passing through the renal pelvis into the ureter. Peristalsis of the smooth muscle originating in pace-maker cells originating in the walls of the calyces propels urine through the pelvis and ureters to the bladder. [WP,unvetted]." [Wikipedia:Major_calyx] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "major calix" EXACT [] xref: EMAPA:18677 xref: FMA:15613 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Kidney_PioM.png/200px-Kidney_PioM.png xref: MA:0001644 xref: SCTID:1106008 is_a: UBERON:0006517 ! kidney calyx [Term] id: UBERON:0001227 name: minor calyx alt_id: UBERON:FMA_15614-MA_0001645 def: "The minor calyx, in the kidney, surrounds the apex of the malpighian pyramids. Urine formed in the kidney passes through a papilla at the apex into the minor calyx then into the major calyx. Peristalsis of the smooth muscle originating in pace-maker cells originating in the walls of the calyces propels urine through the pelvis and ureters to the bladder. [WP,unvetted]." [Wikipedia:Minor_calyx] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "minor calix" EXACT [] xref: EMAPA:18678 xref: FMA:15614 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Kidney_PioM.png/200px-Kidney_PioM.png xref: MA:0001645 xref: SCTID:26293004 is_a: UBERON:0006517 ! kidney calyx [Term] id: UBERON:0001228 name: renal papilla alt_id: UBERON:FMA_15622-MA_0002730 def: "In the kidney, the renal papilla is the location where the Medullary pyramids empty urine into the renal pelvis. Histologically it is marked by medullary collecting ducts converging to channel the fluid. Transitional epithelium begins to be seen. [WP,unvetted]." [Wikipedia:Renal_papilla] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "kidney papilla" EXACT [MP:0011303] xref: BTO:0003925 xref: FMA:15622 xref: galen:RenalPapilla xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Kidney_PioM.png/200px-Kidney_PioM.png xref: MA:0002730 xref: MESH:A.05.810.453.466 xref: ncithesaurus:Renal_Papilla xref: SCTID:362214007 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0001224 ! renal pelvis relationship: part_of UBERON:0001294 ! inner medulla of kidney [Term] id: UBERON:0001229 name: renal corpuscle alt_id: UBERON:FMA_15625-MA_0000376 def: "In the kidney, a renal corpuscle is the initial blood-filtering component of a nephron. It consists of two structures: a glomerulus and a Bowman's capsule. The glomerulus is a small tuft of capillaries containing two cell types. Endothelial cells, which have large fenestrae, are not covered by diaphragms. Mesangial cells are modified smooth muscle cells that lie between the capillaries and the glomerulus. They regulate blood flow by their contractile activity and secrete extracellular matrix, prostaglandins, and cytokines. Mesangial cells also have phagocytic activity, removing proteins and other molecules trapped in the glomerular basement membrane or filtration barrier. The Bowman's capsule has an outer parietal layer composed of simple squamous epithelium. The visceral layer, composed of modified simple squamous epithelium, is lined by podocytes. Podocytes have foot processes, pedicels, that wrap around glomerular capillaries. These pedicels interdigitate with pedicels of adjacent podocytes forming filtration slits. The renal corpuscle filtration barrier is composed of: the fenestrated endothelium of glomerular capillaries, the fused basal lamina of endothelial cells and podocytes, and the filtration slits of the podocytes. This barrier permits passage of water, ions, and small molecules from the bloodstream into Bowman's space (the space between the visceral and parietal layers). Large and/or negatively charged proteins are prevented from passing into Bowman's space, thus retaining these proteins in the circulation. The basal lamina is composed of 3 layers: lamina rara externa, lamina densa, and lamina rara interna. The lamina rara externa is adjacent to the podocyte processes. The lamina densa is the central layer consisting of type IV collagen and laminin. This layer acts as a selective macromolecular filter, preventing the passage of large protein molecules into Bowman's space. The lamina rara intena is adjacent to endothelial cells. This layer contains heparan sulfate, a negatively charged glycosaminoglycan that contributes to the electrostatic barrier of the glomerular filter. There are two poles in the renal corpuscle, a vascular pole, and a urinary pole. The vascular pole is where the afferent and efferent arterioles communicate with the glomerulus. The urinary pole is where the corpuscle opens into the lumen of the proximal convoluted tubule. Fluid from blood in the glomerulus is collected in the Bowman's capsule to form 'glomerular filtrate', which is then further processed along the nephron to form urine. [WP,unvetted]." [Wikipedia:Renal_corpuscle] comment: Together, the Bowmans capsule and the glomerulus comprise the definitive renal corpuscle. http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron subset: uberon_slim subset: vertebrate_core synonym: "corpusculum renale" EXACT [] synonym: "cortical renal corpuscle" RELATED [] synonym: "malphighian corpuscle" RELATED [] synonym: "malphigian corpuscle" EXACT [] synonym: "Malpighian corpuscle" EXACT [ZFA:0005281] xref: BTO:0000333 xref: EV:0100385 xref: FMA:15625 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/22/Renal_corpuscle.svg/200px-Renal_corpuscle.svg.png xref: MA:0000376 xref: ncithesaurus:Renal_Corpuscle xref: OG:0001262 xref: SCTID:361329009 xref: ZFA:0005281 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001225 ! cortex of kidney relationship: part_of UBERON:0001285 ! nephron [Term] id: UBERON:0001230 name: glomerular capsule alt_id: UBERON:FMA_15626-MA_0001660 def: "The Bowman's capsule is a cup-like sac at the beginning of the tubular component of a nephron in the mammalian kidney. A glomerulus is enclosed in the sac. Fluids from blood in the glomerulus are collected in the Bowman's capsule and further processed along the nephron to form urine. This process is known as ultrafiltration. [WP,unvetted]." [Wikipedia:Glomerular_capsule] comment: One fold of the S-shaped body gives rise to Bowman’s capsule[GUDMAP] subset: uberon_slim subset: vertebrate_core synonym: "Bowman's capsule" EXACT [http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron] synonym: "Bowmans capsule" EXACT [KUPO:0001001] xref: AAO:0010526 xref: BTO:0002297 xref: EMAPA:27973 xref: EMAPA:28257 xref: FMA:15626 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray1130.svg/200px-Gray1130.svg.png xref: KUPO:0001001 xref: MA:0001660 xref: ncithesaurus:Bowman_s_Capsule xref: SCTID:361331000 xref: ZFA:0005254 xref: ZFA:0005310 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: develops_from UBERON:0004199 ! S-shaped body relationship: part_of UBERON:0001229 ! renal corpuscle [Term] id: UBERON:0001231 name: nephron tubule alt_id: UBERON:0004210 alt_id: UBERON:FMA_15627-ZFA_0001287 def: "An epithelial tube that is part of the nephron, the functional part of the kidney." [GO:0072078, Wikipedia:Renal_tubule] comment: note that in ISBN10:0073040584 "Vertebrates, Kardong", the uriniferous tubule contains the nephron, so we have a separate class, rather than using a synonym, as in MA subset: uberon_slim subset: vertebrate_core synonym: "kidney tubule" EXACT [GAID:433] synonym: "renal tubule" BROAD [] synonym: "tubulus renalis" EXACT [] synonym: "uriniferous tubule" RELATED [MA:0000377] xref: BTO:0000343 xref: EFO:0003666 xref: EMAPA:27782 xref: EV:0100387 xref: FMA:15627 xref: GAID:433 xref: MA:0000377 xref: MESH:A.05.810.453.736.560 xref: ncithesaurus:Renal_Tubule xref: SCTID:361332007 xref: TAO:0001287 xref: ZFA:0001287 is_a: UBERON:0004211 ! implied link automatically realized ! nephron epithelium is_a: UBERON:0009773 {source="GO"} ! renal tubule relationship: part_of UBERON:0001285 intersection_of: UBERON:0003914 ! epithelial tube intersection_of: part_of UBERON:0001285 {source="GO", source="MA", source="ZFA"} ! nephron relationship: develops_from UBERON:0003918 {notes="checkme"} ! kidney mesenchyme [Term] id: UBERON:0001232 name: collecting duct of renal tubule alt_id: UBERON:FMA_15628-MA_0000371 def: "The collecting duct is a portion of the nephron through which water flows, moving passively down its concentration gradient" [GO:0072044] comment: note that in ISBN10:0073040584 "Vertebrates, Kardong", the nephron is adjacent to the collecting tubule, consistent with FMA, but not GO subset: uberon_slim subset: vertebrate_core synonym: "collecting duct" EXACT [GO:0072044] synonym: "collecting duct system" RELATED [BTO:0000761] synonym: "collecting tubule" RELATED [] synonym: "kidney collecting duct" EXACT [] synonym: "renal collecting tubule" EXACT [FMA:15628] synonym: "tubulus renalis colligens" EXACT [] xref: BTO:0000761 xref: EMAPA:28407 xref: EV:0100391 xref: FMA:15628 xref: GAID:434 xref: MA:0000371 xref: MESH:A.05.810.453.736.560.510 xref: SCTID:28202009 xref: ZFA:0005294 is_a: UBERON:0000058 ! duct is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0006553 ! implied link automatically realized ! renal duct relationship: part_of UBERON:0001285 {notes="checkme", source="GO"} ! nephron relationship: part_of UBERON:0007684 {source="FMA"} ! uriniferous tubule [Term] id: UBERON:0001233 name: right adrenal gland alt_id: UBERON:FMA_15629-MA_0000719 comment: This class was created automatically from a combination of ontologies synonym: "right suprarenal gland" EXACT [] xref: FMA:15629 xref: MA:0000719 xref: ncithesaurus:Right_Adrenal_Gland xref: SCTID:281625001 is_a: UBERON:0002369 ! adrenal gland [Term] id: UBERON:0001234 name: left adrenal gland alt_id: UBERON:FMA_15630-MA_0000718 comment: This class was created automatically from a combination of ontologies synonym: "left suprarenal gland" EXACT [] xref: FMA:15630 xref: MA:0000718 xref: ncithesaurus:Left_Adrenal_Gland xref: SCTID:281626000 is_a: UBERON:0002369 ! adrenal gland [Term] id: UBERON:0001235 name: adrenal cortex alt_id: UBERON:FMA_15632-MA_0000118-XAO_0000165 def: "Situated along the perimeter of the adrenal gland, the adrenal cortex mediates the stress response through the production of mineralocorticoids and glucocorticoids, including aldosterone and cortisol respectively. It is also a secondary site of androgen synthesis. [WP,unvetted]." [Wikipedia:Adrenal_cortex] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "adrenal gland cortex" EXACT [] synonym: "cortex (glandula suprarenalis)" EXACT [] synonym: "cortex glandulae suprarenalis" RELATED [BTO:0000045] synonym: "cortex of adrenal gland" EXACT [] synonym: "cortex of suprarenal gland" EXACT [] synonym: "interrenal tissue" RELATED [] synonym: "suprarenal cortex" EXACT [] xref: AAO:0011009 xref: BTO:0000045 xref: EFO:0000237 xref: EMAPA:18427 xref: EV:0100136 xref: FMA:15632 xref: GAID:447 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5c/Gray1185.png/200px-Gray1185.png xref: MA:0000118 xref: MAT:0000494 xref: MESH:A.06.407.071.140 xref: ncithesaurus:Adrenal_Cortex xref: OG:0001481 xref: SCTID:362584002 xref: XAO:0000165 is_a: UBERON:0001851 ! cortex is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0002369 intersection_of: UBERON:0001851 ! cortex intersection_of: part_of UBERON:0002369 ! adrenal gland relationship: develops_from UBERON:0000926 {source="Wikipedia"} ! mesoderm relationship: part_of UBERON:0002369 ! adrenal gland [Term] id: UBERON:0001236 name: adrenal medulla alt_id: UBERON:FMA_15633-MA_0000119-XAO_0000166 def: "The adrenal medulla is part of the adrenal gland. It is located at the center of the gland, being surrounded by the adrenal cortex. It is the innermost part of the adrenal gland, consisting of cells that secrete epinephrine, norepinephrine, and a small amount of dopamine in response to stimulation by sympathetic preganglionic neurons. Composed mainly of hormone-producing chromaffin cells, the adrenal medulla is the principal site of the conversion of the amino acid tyrosine into the catecholamines adrenaline (epinephrine), noradrenaline (norepinephrine), and dopamine[WP,unvetted]." [Wikipedia:Adrenal_medulla] subset: uberon_slim synonym: "adrenal gland medulla" EXACT [] synonym: "chromaffin cells" RELATED [] synonym: "medulla (glandula suprarenalis)" EXACT [] synonym: "medulla glandulae suprarenalis" EXACT [FMA:15633, FMA:TA] synonym: "medulla of adrenal gland" EXACT [OBOL:automatic] synonym: "medulla of glandula suprarenalis" RELATED [BTO:0000049] synonym: "medulla of suprarenal gland" EXACT [] synonym: "suprarenal medulla" EXACT [] xref: AAO:0011010 xref: BTO:0000049 xref: EFO:0000852 xref: EMAPA:18428 xref: EV:0100137 xref: FMA:15633 xref: GAID:451 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5c/Gray1185.png/200px-Gray1185.png xref: MA:0000119 xref: MAT:0000495 xref: MESH:A.06.224.161 xref: ncithesaurus:Adrenal_Medulla xref: OG:0001378 xref: SCTID:362585001 xref: XAO:0000166 is_a: UBERON:0000958 ! medulla is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0002369 intersection_of: UBERON:0000958 ! medulla intersection_of: part_of UBERON:0002369 ! adrenal gland relationship: develops_from UBERON:0002342 {source="Wikipedia"} ! neural crest relationship: surrounded_by UBERON:0001235 ! adrenal cortex [Term] id: UBERON:0001237 name: paraaortic body alt_id: UBERON:FMA_15647-MA_0001137 def: "." [Wikipedia:Organ_of_Zuckerkandl] comment: This class was created automatically from a combination of ontologies subset: organ_slim subset: uberon_slim synonym: "organ of zuckerkandl" EXACT [] synonym: "para-aortic body" RELATED [] synonym: "paraganglia of zuckerkandl" RELATED [] synonym: "paraganglion of Zuckerkandl" EXACT [EMAPA:18223] xref: EMAPA:18223 xref: FMA:15647 xref: GAID:444 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/af/Gray531.png/200px-Gray531.png xref: MA:0001137 xref: MESH:A.06.224.636 xref: SCTID:276159005 is_a: UBERON:0000062 {source="FMA"} ! organ relationship: part_of UBERON:0000949 ! endocrine system [Term] id: UBERON:0001238 name: lamina propria of small intestine alt_id: UBERON:FMA_15651-MA_0001554 def: "Lamina propria that is part_of the small intestine." [GOC:Obol] synonym: "lamina propria mucosa of small bowel" EXACT [OBOL:automatic] synonym: "lamina propria mucosa of small intestine" EXACT [OBOL:automatic] synonym: "lamina propria mucosae of small bowel" EXACT [OBOL:automatic] synonym: "lamina propria mucosae of small intestine" EXACT [] synonym: "lamina propria of mucosa of small intestine" EXACT [] synonym: "lamina propria of small bowel" EXACT [OBOL:automatic] synonym: "small bowel lamina propria" EXACT [OBOL:automatic] synonym: "small bowel lamina propria mucosa" EXACT [OBOL:automatic] synonym: "small bowel lamina propria mucosae" EXACT [OBOL:automatic] synonym: "small intestine lamina propria" EXACT [] synonym: "small intestine lamina propria mucosa" EXACT [OBOL:automatic] synonym: "small intestine lamina propria mucosae" EXACT [OBOL:automatic] xref: FMA:15651 xref: MA:0001554 xref: ncithesaurus:Small_Intestinal_Lamina_Propria xref: SCTID:63588008 is_a: UBERON:0000030 ! lamina propria is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure is_a: UBERON:0004780 ! implied link automatically realized ! gastrointestinal system lamina propria relationship: part_of UBERON:0002108 intersection_of: UBERON:0000030 ! lamina propria intersection_of: part_of UBERON:0002108 ! small intestine relationship: part_of UBERON:0001204 ! mucosa of small intestine [Term] id: UBERON:0001239 name: muscularis mucosae of large intestine alt_id: UBERON:FMA_15655-MA_0002689 comment: This class was created automatically from a combination of ontologies synonym: "lamina muscularis of large intestine mucosa" EXACT [] synonym: "lamina muscularis of large intestine mucous membrane" EXACT [] synonym: "large intestine muscularis mucosa" EXACT [] xref: FMA:15655 xref: MA:0002689 xref: ncithesaurus:Large_Intestinal_Muscularis_Mucosa is_a: UBERON:0001240 ! implied link automatically realized ! muscularis mucosae of intestine is_a: UBERON:0004220 ! implied link automatically realized ! large intestine smooth muscle relationship: part_of UBERON:0000059 intersection_of: UBERON:0006676 ! muscularis mucosa intersection_of: part_of UBERON:0000059 ! large intestine relationship: part_of UBERON:0001207 ! mucosa of large intestine relationship: part_of UBERON:0001240 ! muscularis mucosae of intestine [Term] id: UBERON:0001240 name: muscularis mucosae of intestine alt_id: UBERON:FMA_15691-MA_0002694 comment: This class was created automatically from a combination of ontologies synonym: "intestine muscularis mucosa" EXACT [] xref: FMA:15691 xref: MA:0002694 is_a: UBERON:0004221 ! implied link automatically realized ! intestine smooth muscle is_a: UBERON:0006676 ! implied link automatically realized ! muscularis mucosa relationship: part_of UBERON:0000160 intersection_of: UBERON:0006676 ! muscularis mucosa intersection_of: part_of UBERON:0000160 ! intestine relationship: part_of UBERON:0001242 ! intestinal mucosa [Term] id: UBERON:0001241 name: crypt of Lieberkuhn of small intestine alt_id: UBERON:FMA_15693-MA_0001552 def: "A crypt of lieberkuhn that is part of a small intestine [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "crypt of lieberkuhn of small bowel" EXACT [OBOL:automatic] synonym: "crypt of lieberkuhn of small intestine" EXACT [OBOL:automatic] synonym: "intestinal gland of small bowel" EXACT [OBOL:automatic] synonym: "intestinal gland of small intestine" EXACT [OBOL:automatic] synonym: "lieberkuhn crypt of small bowel" EXACT [OBOL:automatic] synonym: "lieberkuhn crypt of small intestine" EXACT [OBOL:automatic] synonym: "small bowel crypt of lieberkuhn" EXACT [OBOL:automatic] synonym: "small bowel intestinal gland" EXACT [OBOL:automatic] synonym: "small bowel lieberkuhn crypt" EXACT [OBOL:automatic] synonym: "small intestinal crypt of Lieberkuhn" EXACT [] synonym: "small intestine crypt of Lieberkuhn" EXACT [] synonym: "small intestine crypt of lieberkuhn" EXACT [OBOL:automatic] synonym: "small intestine intestinal gland" EXACT [OBOL:automatic] synonym: "small intestine lieberkuhn crypt" EXACT [OBOL:automatic] xref: FMA:15693 xref: MA:0001552 xref: ncithesaurus:Small_Intestinal_Crypt_of_Lieberkuhn is_a: UBERON:0001983 ! crypt of lieberkuhn relationship: part_of UBERON:0002108 intersection_of: UBERON:0001983 ! crypt of lieberkuhn intersection_of: part_of UBERON:0002108 ! small intestine relationship: part_of UBERON:0002108 ! small intestine [Term] id: UBERON:0001242 name: intestinal mucosa alt_id: UBERON:FMA_15695-MA_0001537 def: "The innermost membrane of the four coats of the intestinal wall, the other three being the submucosa, muscular layers, and serosa. (Berk et al., Gastroenterology, 4th ed, v.3, p1479)" [MESH:A.03.492.411.369] subset: uberon_slim synonym: "bowel mucosa" EXACT [OBOL:automatic] synonym: "bowel mucosa of organ" EXACT [OBOL:automatic] synonym: "bowel mucous membrane" EXACT [OBOL:automatic] synonym: "bowel organ mucosa" EXACT [OBOL:automatic] synonym: "intestine mucosa" EXACT [] synonym: "intestine mucosa of organ" EXACT [OBOL:automatic] synonym: "intestine mucous membrane" EXACT [OBOL:automatic] synonym: "intestine organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of bowel" EXACT [OBOL:automatic] synonym: "mucosa of intestine" EXACT [] synonym: "mucosa of organ of bowel" EXACT [OBOL:automatic] synonym: "mucosa of organ of intestine" EXACT [OBOL:automatic] synonym: "mucous membrane of bowel" EXACT [OBOL:automatic] synonym: "mucous membrane of intestine" EXACT [OBOL:automatic] synonym: "organ mucosa of bowel" EXACT [OBOL:automatic] synonym: "organ mucosa of intestine" EXACT [OBOL:automatic] xref: BTO:0000642 xref: FMA:15695 xref: GAID:296 xref: MA:0001537 xref: MESH:A.03.492.411.369 xref: ncithesaurus:Intestinal_Mucosa xref: SCTID:362080002 is_a: UBERON:0004786 ! implied link automatically realized ! gastrointestinal system mucosa relationship: part_of UBERON:0000160 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0000160 ! intestine relationship: part_of UBERON:0001262 ! wall of intestine [Term] id: UBERON:0001243 name: serosa of intestine alt_id: UBERON:FMA_15701-MA_0001538 def: "A serous membrane that is part of a wall of intestine [Obol]." [OBOL:automatic] comment: TODO - check serosa/peritoneum synonym: "anatomical wall of bowel serosa" EXACT [OBOL:automatic] synonym: "anatomical wall of bowel serous membrane" EXACT [OBOL:automatic] synonym: "anatomical wall of intestine serosa" EXACT [OBOL:automatic] synonym: "anatomical wall of intestine serous membrane" EXACT [OBOL:automatic] synonym: "bowel anatomical wall serosa" EXACT [OBOL:automatic] synonym: "bowel anatomical wall serous membrane" EXACT [OBOL:automatic] synonym: "bowel wall serosa" EXACT [OBOL:automatic] synonym: "bowel wall serous membrane" EXACT [OBOL:automatic] synonym: "intestinal serosa" EXACT [] synonym: "intestinal wall serosa" EXACT [OBOL:automatic] synonym: "intestinal wall serous membrane" EXACT [OBOL:automatic] synonym: "intestine anatomical wall serosa" EXACT [OBOL:automatic] synonym: "intestine anatomical wall serous membrane" EXACT [OBOL:automatic] synonym: "intestine serosa" EXACT [] synonym: "intestine wall serosa" EXACT [OBOL:automatic] synonym: "intestine wall serous membrane" EXACT [OBOL:automatic] synonym: "serosa of anatomical wall of bowel" EXACT [OBOL:automatic] synonym: "serosa of anatomical wall of intestine" EXACT [OBOL:automatic] synonym: "serosa of bowel anatomical wall" EXACT [OBOL:automatic] synonym: "serosa of bowel wall" EXACT [OBOL:automatic] synonym: "serosa of intestinal wall" EXACT [OBOL:automatic] synonym: "serosa of intestine anatomical wall" EXACT [OBOL:automatic] synonym: "serosa of intestine wall" EXACT [OBOL:automatic] synonym: "serosa of wall of bowel" EXACT [OBOL:automatic] synonym: "serosa of wall of intestine" EXACT [OBOL:automatic] synonym: "serous membrane of anatomical wall of bowel" EXACT [OBOL:automatic] synonym: "serous membrane of anatomical wall of intestine" EXACT [OBOL:automatic] synonym: "serous membrane of bowel anatomical wall" EXACT [OBOL:automatic] synonym: "serous membrane of bowel wall" EXACT [OBOL:automatic] synonym: "serous membrane of intestinal wall" EXACT [OBOL:automatic] synonym: "serous membrane of intestine anatomical wall" EXACT [OBOL:automatic] synonym: "serous membrane of intestine wall" EXACT [OBOL:automatic] synonym: "serous membrane of wall of bowel" EXACT [OBOL:automatic] synonym: "serous membrane of wall of intestine" EXACT [OBOL:automatic] synonym: "visceral peritoneum of intestine" EXACT [] synonym: "wall of bowel serosa" EXACT [OBOL:automatic] synonym: "wall of bowel serous membrane" EXACT [OBOL:automatic] synonym: "wall of intestine serosa" EXACT [OBOL:automatic] synonym: "wall of intestine serous membrane" EXACT [OBOL:automatic] xref: FMA:15701 xref: MA:0001538 is_a: UBERON:0000042 ! serous membrane is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004782 ! implied link automatically realized ! gastrointestinal system serosa relationship: part_of UBERON:0001262 intersection_of: UBERON:0000042 ! serous membrane intersection_of: part_of UBERON:0001262 ! wall of intestine relationship: part_of UBERON:0001262 ! wall of intestine [Term] id: UBERON:0001244 name: internal anal sphincter alt_id: UBERON:FMA_15710-MA_0001534 def: "The Sphincter ani internus (or internal anal sphincter) is a muscular ring which surrounds about 2.5 cm of the anal canal; its inferior border is in contact with, but quite separate from, the Sphincter ani externus. It is about 5 mm thick, and is formed by an aggregation of the involuntary circular fibers of the intestine. Its lower border is about 6 mm from the orifice of the anus. [WP,unvetted]." [Wikipedia:Internal_anal_sphincter] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "circular layer of anal muscularis externa" EXACT [] synonym: "circular layer of muscularis externa of anal canal" EXACT [] synonym: "circular layer of muscularis propria of anal canal" EXACT [] synonym: "circular muscle layer of anal canal" EXACT [] xref: EMAPA:18266 xref: FMA:15710 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e9/Gray1079.png/200px-Gray1079.png xref: MA:0001534 xref: ncithesaurus:Internal_Anal_Sphincter is_a: UBERON:0004231 {source="MA"} ! anal region smooth muscle is_a: UBERON:0004590 ! sphincter muscle is_a: UBERON:0004916 ! implied link automatically realized ! anal sphincter is_a: UBERON:0007521 ! implied link automatically realized ! smooth muscle sphincter relationship: part_of UBERON:0001353 ! anal region [Term] id: UBERON:0001245 name: anus alt_id: UBERON:FMA_15711-MA_0000331-ZFA_0000066 def: "Orifice at the opposite end of an animal's digestive tract from the mouth. Its function is to expel feces, unwanted semi-solid matter produced during digestion, which, depending on the type of animal, may be one or more of: matter which the animal cannot digest, such as bones; food material after all the nutrients have been extracted, for example cellulose or lignin; ingested matter which would be toxic if it remained in the digestive tract; and dead or excess gut bacteria and other endosymbionts." [Wikipedia:Anus, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "anal orifice" EXACT [] synonym: "proctodeum" RELATED [] xref: BTO:0001680 xref: EV:0100082 xref: FBbt:00001893 xref: FBbt:00003148 xref: FMA:15711 xref: GAID:312 xref: galen:Anus xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/75/Anorectum.gif/200px-Anorectum.gif xref: MA:0000331 xref: MESH:A.03.492.411.495.767.288 xref: ncithesaurus:Anus xref: OpenCyc:Mx4rvVjaEZwpEbGdrcN5Y29ycA xref: SCTID:181262009 xref: TADS:0000066 xref: TGMA:0001279 xref: WBbt:0005364 is_a: UBERON:0000161 ! orifice is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: develops_from UBERON:0000931 ! proctodeum relationship: part_of UBERON:0001555 ! digestive tract [Term] id: UBERON:0001246 name: interlobular bile duct alt_id: UBERON:FMA_15767-MA_0002668 def: "the canals that carry bile in the liver between the intralobular ducts and the biliary ductules; interlobular bile ducts are part of the interlobular portal triad." [MP:0009500] comment: This class was created automatically from a combination of ontologies xref: FMA:15767 xref: MA:0002668 xref: ncithesaurus:Interlobular_Bile_Duct xref: SCTID:83488001 is_a: UBERON:0003704 {source="FMA"} ! intrahepatic bile duct relationship: part_of UBERON:0001279 {source="FMA"} ! portal triad [Term] id: UBERON:0001247 name: falciform ligament alt_id: UBERON:FMA_15823-MA_0001622 def: "a ligament that attaches the liver to the anterior body wall. It is a broad and thin antero-posterior peritoneal fold, falciform in shape, its base being directed downward and backward and its apex upward and backward. It is a remnant of the ventral mesentery of the fetus. It is situated in an antero-posterior plane but lies obliquely, so that one surface faces forward and is in contact with the peritoneum behind the right rectus and the diaphragm, while the other is directed backward and is in contact with the left lobe of the liver. It is attached by its left margin to the under surface of the diaphragm and the posterior surface of the sheath of the right Rectus as low down as the umbilicus; by its right margin it extends from the notch on the anterior margin of the liver, as far back as the posterior surface. It is composed of two layers of peritoneum closely united together. Its base or free edge contains between its layers the round ligament and the paraumbilical veins[WP]." [Wikipedia:Falciform_ligament] comment: In FMA this is a subclass of mesentery. In MA it is a subclass of ligament, we infer and assert this is a nonskeletal ligament subset: uberon_slim synonym: "falciform ligament of liver" EXACT [] synonym: "ligamentum falciforme (hepatis)" EXACT [] synonym: "ligamentum falciforme hepatis" EXACT [FMA:15823, FMA:TA] xref: EHDAA:4856 xref: EHDAA2:0000499 xref: EMAPA:18288 xref: EMAPA:18908 xref: FMA:15823 xref: MA:0001622 xref: ncithesaurus:Falciform_Ligament xref: OG:0000355 xref: SCTID:362705001 is_a: UBERON:0002095 {source="FMA"} ! mesentery is_a: UBERON:0003281 ! implied link automatically realized ! mesentery of stomach is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue is_a: UBERON:0008845 {source="MA-propagated"} ! nonskeletal ligament relationship: attached_to UBERON:0000309 relationship: attached_to UBERON:0002107 intersection_of: UBERON:0008845 ! nonskeletal ligament intersection_of: attached_to UBERON:0000309 ! body wall intersection_of: attached_to UBERON:0002107 ! liver relationship: part_of UBERON:0005626 {source="MA"} ! ventral mesogastrium [Term] id: UBERON:0001248 name: hilum of spleen alt_id: UBERON:FMA_15841-MA_0002670 def: "The Splenic hilum is a location on the surface of the spleen. It is the point of attachment for the gastrosplenic ligament, and the point of insertion for the splenic artery and splenic vein. [WP,unvetted]." [Wikipedia:Splenic_hilum] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "hilum lienale" EXACT [FMA:15841, FMA:TA] synonym: "hilum splenicum" EXACT [FMA:15841, FMA:TA] synonym: "spleen hilum" EXACT [] synonym: "splenic hilum" EXACT [] xref: EMAPA:19303 xref: FMA:15841 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a2/Gray1188.png/200px-Gray1188.png xref: MA:0002670 xref: ncithesaurus:Splenic_Hilum xref: SCTID:245377005 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004885 ! implied link automatically realized ! hilum relationship: part_of UBERON:0002106 intersection_of: UBERON:0004885 ! hilum intersection_of: part_of UBERON:0002106 ! spleen [Term] id: UBERON:0001249 name: lymphoid nodule of spleen alt_id: UBERON:FMA_15843-MA_0002672 def: "A lymphoid nodule that is part_of a spleen" [GOC:Obol] synonym: "lymphatic follicle of spleen" EXACT [] synonym: "lymphoid follicle of spleen" EXACT [] synonym: "lymphoid nodule of spleen" EXACT [OBOL:automatic] synonym: "malpighian body" EXACT [] synonym: "spleen lymphoid follicle" EXACT [] synonym: "spleen lymphoid nodule" RELATED [] synonym: "spleen Lymphoid nodule" EXACT [OBOL:automatic] synonym: "splenic lymphatic follicle" EXACT [] synonym: "splenic Lymphoid nodule" EXACT [OBOL:automatic] xref: FMA:15843 xref: MA:0002672 xref: ncithesaurus:Splenic_Lymphoid_Follicle xref: SCTID:35845000 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000444 ! implied link automatically realized ! lymphoid follicle is_a: UBERON:0001744 ! lymphoid tissue relationship: part_of UBERON:0002106 intersection_of: UBERON:0000444 ! lymphoid follicle intersection_of: part_of UBERON:0002106 ! spleen relationship: part_of UBERON:0001959 ! white pulp of spleen [Term] id: UBERON:0001250 name: red pulp of spleen alt_id: UBERON:FMA_15844-MA_0000756 def: "Red pulp of the spleen is composed of connective tissue known as the cords of Billroth and many splenic sinuses that are engorged with blood, giving it a red color. Its primary function is to filter the blood of antigens, microorganisms, and defective or worn-out red blood cells. The spleen is made of red pulp and white pulp, separated by the marginal zone; 76-79% of a normal spleen is red pulp. Unlike white pulp, which mainly contains lymphocytes such as T cells, red pulp is made up of several different types of blood cells, including platelets, granulocytes, red blood cells, and plasma." [Wikipedia:Red_pulp] subset: uberon_slim synonym: "pulpa rubra" EXACT [FMA:15844, FMA:TA] synonym: "red pulp" EXACT [] synonym: "spleen red pulp" EXACT [] synonym: "splenic red pulp" EXACT [] xref: FMA:15844 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/15/Gray1191.png/200px-Gray1191.png xref: MA:0000756 xref: ncithesaurus:Splenic_Red_Pulp xref: SCTID:27579002 is_a: UBERON:0000064 ! organ part is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0002106 ! spleen [Term] id: UBERON:0001251 name: marginal zone of spleen alt_id: UBERON:FMA_15852-MA_0000755 def: "region at the interface between the non-lymphoid red pulp and the lymphoid white-pulp of the spleen." [Wikipedia:Marginal_zone] comment: WP says - (Some sources consider it to be the part of red pulp which borders on the white pulp, while other sources consider it to be neither red pulp nor white pulp.) - we use the adjacency relation here so it overlaps neither. FMA considers this an anatomical line synonym: "junctional zone of spleen" EXACT [] synonym: "marginal zone" BROAD [Wikipedia:Marginal_zone] synonym: "spleen marginal zone" EXACT [] xref: AAO:0010448 xref: FMA:15852 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/15/Gray1191.png/200px-Gray1191.png xref: MA:0000755 xref: ncithesaurus:Marginal_Zone is_a: UBERON:0000466 ! immaterial anatomical entity disjoint_from: UBERON:0004879 ! marginal zone of embryo relationship: adjacent_to UBERON:0001250 ! red pulp of spleen relationship: adjacent_to UBERON:0001959 ! white pulp of spleen relationship: part_of UBERON:0002106 ! spleen [Term] id: UBERON:0001252 name: adventitia of ureter alt_id: UBERON:FMA_15892-MA_0002652 comment: This class was created automatically from a combination of ontologies synonym: "external adventitia of ureter" EXACT [] synonym: "ureter adventitia" EXACT [] synonym: "ureteral adventitia" EXACT [] xref: EMAPA:28114 xref: FMA:15892 xref: MA:0002652 xref: SCTID:392273001 is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0005742 ! implied link automatically realized ! adventitia is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0000056 intersection_of: UBERON:0005742 ! adventitia intersection_of: part_of UBERON:0000056 ! ureter [Term] id: UBERON:0001253 name: lamina propria of ureter alt_id: UBERON:FMA_15896-MA_0002653 def: "A lamina propria that is part of a ureter [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "lamina propria mucosa of ureter" EXACT [OBOL:automatic] synonym: "lamina propria mucosae of ureter" EXACT [OBOL:automatic] synonym: "ureter lamina propria" EXACT [] synonym: "ureter lamina propria mucosa" EXACT [OBOL:automatic] synonym: "ureter lamina propria mucosae" EXACT [OBOL:automatic] xref: EMAPA:28841 xref: FMA:15896 xref: MA:0002653 xref: SCTID:2771005 is_a: UBERON:0000030 ! lamina propria is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0000056 intersection_of: UBERON:0000030 ! lamina propria intersection_of: part_of UBERON:0000056 ! ureter relationship: part_of UBERON:0001008 ! excretory system [Term] id: UBERON:0001254 name: urothelium of ureter alt_id: UBERON:FMA_15897-MA_0002655 synonym: "transitional epithelium of ureter" EXACT [] synonym: "ureter transitional epithelium" EXACT [] synonym: "ureter urothelium" EXACT [] xref: FMA:15897 xref: MA:0002655 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000365 ! implied link automatically realized ! urothelium relationship: part_of UBERON:0000056 intersection_of: UBERON:0000365 ! urothelium intersection_of: part_of UBERON:0000056 ! ureter [Term] id: UBERON:0001255 name: urinary bladder alt_id: UBERON:FMA_15900-FMA_7203-MA_0000368-MA_0000380-MIAA_0000118-MIAA_0000119-MIAA_0000122-WBbt_0005775-XAO_0000154-ZFA_0000529 def: "Organ with organ cavity which is continuous proximally with the right and left ureters and distally with the urethra." [FMA:15900, Wikipedia:Urinary_bladder] comment: editor note: consider adding a 'bladder' grouping class subset: major_organ subset: organ_slim subset: uberon_slim synonym: "bladder" EXACT [] synonym: "excretory canal" BROAD [] xref: AAO:0000623 xref: BTO:0001418 xref: EFO:0000290 xref: EHDAA:9328 xref: EHDAA2:0000174 xref: EMAPA:18321 xref: EV:0100098 xref: FMA:15900 xref: GAID:0000004 xref: galen:UrinaryBladder xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Urinary_system.svg/200px-Urinary_system.svg.png xref: MA:0000380 xref: MAT:0000122 xref: MESH:A.05.810.161 xref: MIAA:0000122 xref: ncithesaurus:Bladder xref: OG:0000740 xref: OpenCyc:Mx4rvVjMmZwpEbGdrcN5Y29ycA xref: SCTID:302512001 xref: XAO:0000154 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000489 ! cavitated compound organ is_a: UBERON:0002075 ! viscus is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: develops_from UBERON:0000164 ! primitive urogenital sinus relationship: part_of UBERON:0001556 ! lower urinary tract relationship: part_of UBERON:0002323 ! body cavity [Term] id: UBERON:0001256 name: wall of urinary bladder alt_id: UBERON:FMA_15902-MA_0002493 def: "An anatomical wall that is part of a urinary bladder [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "anatomical wall of bladder" EXACT [OBOL:automatic] synonym: "anatomical wall of urinary bladder" EXACT [OBOL:automatic] synonym: "bladder anatomical wall" EXACT [OBOL:automatic] synonym: "bladder wall" EXACT [OBOL:automatic] synonym: "urinary bladder anatomical wall" EXACT [OBOL:automatic] synonym: "urinary bladder wall" EXACT [] synonym: "wall of bladder" EXACT [OBOL:automatic] xref: BTO:0001462 xref: FMA:15902 xref: MA:0002493 xref: ncithesaurus:Bladder_Wall xref: SCTID:362225003 is_a: UBERON:0000060 ! anatomical wall is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0001255 intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0001255 ! urinary bladder relationship: part_of UBERON:0001255 ! urinary bladder [Term] id: UBERON:0001257 name: trigone of urinary bladder alt_id: UBERON:FMA_15910-MA_0002492 def: "The trigone is a smooth triangular region of the internal urinary bladder formed by the two ureteral orifices and the internal urethral orifice. The area is very sensitive to expansion and once stretched to a certain degree, the urinary bladder signals the brain of its need to empty. The signals become stronger as the bladder continues to fill. Embryologically, the trigone of the Bladder is derived from the caudal end of mesonephric ducts. In the Female the mesonephric ducts break down but, thus, the Trigone of the Bladder is less prominent but, still present. [WP,unvetted]." [Wikipedia:Trigone_of_urinary_bladder] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "deep trigone" EXACT [] synonym: "Lieutaud's trigone" EXACT [] synonym: "musculus trigoni vesicae profundus" EXACT [FMA:15910, FMA:TA] synonym: "trigone of bladder" EXACT [] synonym: "trigonum vesicae" EXACT [FMA:15910, FMA:TA] synonym: "urinary bladder trigone" EXACT [] synonym: "vesical trigone" EXACT [] xref: FMA:15910 xref: galen:TrigoneOfUrinaryBladder xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/57/Illu_bladder.jpg/200px-Illu_bladder.jpg xref: MA:0002492 xref: ncithesaurus:Bladder_Trigone xref: SCTID:272663002 is_a: UBERON:0000064 ! organ part is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0001255 ! urinary bladder [Term] id: UBERON:0001258 name: neck of urinary bladder alt_id: UBERON:FMA_15912-MA_0002491 def: "The neck of the urinary bladder is the portion of the urinary bladder adjacent to the prostate gland in men. [WP,unvetted]." [Wikipedia:Neck_of_urinary_bladder] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "bladder neck" EXACT [] synonym: "cervix vesicae" EXACT [FMA:15912, FMA:TA] synonym: "collum vesicae" EXACT [FMA:15912, FMA:TA] synonym: "neck of bladder" EXACT [] synonym: "urinary bladder neck" EXACT [] synonym: "vesical neck" EXACT [] xref: FMA:15912 xref: galen:UrinaryBladderNeck xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/63/Gray1156.png/200px-Gray1156.png xref: MA:0002491 xref: ncithesaurus:Bladder_Neck xref: SCTID:362227006 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001560 ! neck of organ is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0001255 ! urinary bladder [Term] id: UBERON:0001259 name: mucosa of urinary bladder alt_id: UBERON:FMA_15928-MA_0001692 def: "A mucosa that is part of a urinary bladder [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "bladder mucosa" EXACT [] synonym: "bladder mucosa of organ" EXACT [OBOL:automatic] synonym: "bladder mucous membrane" EXACT [OBOL:automatic] synonym: "bladder organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of bladder" EXACT [OBOL:automatic] synonym: "mucosa of organ of bladder" EXACT [OBOL:automatic] synonym: "mucosa of organ of urinary bladder" EXACT [OBOL:automatic] synonym: "mucous membrane of bladder" EXACT [] synonym: "mucous membrane of urinary bladder" EXACT [] synonym: "organ mucosa of bladder" EXACT [OBOL:automatic] synonym: "organ mucosa of urinary bladder" EXACT [OBOL:automatic] synonym: "tunica mucosa (vesica urinaria)" EXACT [FMA:15928, FMA:TA] synonym: "tunica mucosa vesicae" EXACT [FMA:15928, FMA:TA] synonym: "urinary bladder mucosa" EXACT [] synonym: "urinary bladder mucosa of organ" EXACT [OBOL:automatic] synonym: "urinary bladder mucous membrane" EXACT [OBOL:automatic] synonym: "urinary bladder organ mucosa" EXACT [OBOL:automatic] xref: EFO:0000293 xref: FMA:15928 xref: galen:MucousMembraneOfUrinaryBladder xref: MA:0001692 xref: ncithesaurus:Bladder_Mucosa xref: SCTID:362224004 is_a: UBERON:0000064 ! organ part is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000344 ! implied link automatically realized ! mucosa is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0001255 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001255 ! urinary bladder relationship: part_of UBERON:0001256 ! wall of urinary bladder [Term] id: UBERON:0001260 name: serosa of urinary bladder alt_id: UBERON:FMA_15932-MA_0001696 def: "A serous membrane that is part of a urinary bladder [Obol]." [OBOL:automatic] comment: TODO - check serosa/peritoneum synonym: "bladder serosa" EXACT [] synonym: "bladder serous membrane" EXACT [OBOL:automatic] synonym: "serosa of bladder" EXACT [] synonym: "serous coat of bladder" EXACT [] synonym: "serous coat of urinary bladder" EXACT [] synonym: "serous membrane of bladder" EXACT [OBOL:automatic] synonym: "serous membrane of urinary bladder" EXACT [OBOL:automatic] synonym: "tunica serosa (vesica urinaria)" EXACT [FMA:15932, FMA:TA] synonym: "tunica serosa vesicae" EXACT [FMA:15932, FMA:TA] synonym: "urinary bladder serosa" EXACT [] synonym: "urinary bladder serous membrane" EXACT [OBOL:automatic] synonym: "visceral peritoneum of urinary bladder" EXACT [] xref: EMAPA:28661 xref: FMA:15932 xref: MA:0001696 xref: SCTID:5868002 is_a: UBERON:0000042 ! serous membrane is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0001255 intersection_of: UBERON:0000042 ! serous membrane intersection_of: part_of UBERON:0001255 ! urinary bladder [Term] id: UBERON:0001261 name: lamina propria of urinary bladder alt_id: UBERON:FMA_15935-MA_0001695 def: "A lamina propria that is part of a urinary bladder [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "bladder lamina propria" EXACT [OBOL:automatic] synonym: "bladder lamina propria mucosa" EXACT [OBOL:automatic] synonym: "bladder lamina propria mucosae" EXACT [OBOL:automatic] synonym: "lamina propria mucosa of bladder" EXACT [OBOL:automatic] synonym: "lamina propria mucosa of urinary bladder" EXACT [OBOL:automatic] synonym: "lamina propria mucosae of bladder" EXACT [OBOL:automatic] synonym: "lamina propria mucosae of urinary bladder" EXACT [OBOL:automatic] synonym: "lamina propria of bladder" EXACT [OBOL:automatic] synonym: "urinary bladder lamina propria" EXACT [] synonym: "urinary bladder lamina propria mucosa" EXACT [OBOL:automatic] synonym: "urinary bladder lamina propria mucosae" EXACT [OBOL:automatic] xref: EMAPA:30088 xref: FMA:15935 xref: MA:0001695 xref: ncithesaurus:Bladder_Lamina_Propria is_a: UBERON:0000030 ! lamina propria is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0001255 intersection_of: UBERON:0000030 ! lamina propria intersection_of: part_of UBERON:0001255 ! urinary bladder relationship: part_of UBERON:0001259 ! mucosa of urinary bladder [Term] id: UBERON:0001262 name: wall of intestine alt_id: UBERON:FMA_15949-MA_0002693 def: "An anatomical wall that is part of a intestine [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "anatomical wall of bowel" EXACT [OBOL:automatic] synonym: "anatomical wall of intestine" EXACT [OBOL:automatic] synonym: "bowel anatomical wall" EXACT [OBOL:automatic] synonym: "bowel wall" EXACT [OBOL:automatic] synonym: "intestinal wall" EXACT [] synonym: "intestine anatomical wall" EXACT [OBOL:automatic] synonym: "intestine wall" EXACT [] synonym: "wall of bowel" EXACT [OBOL:automatic] xref: BTO:0000647 xref: FMA:15949 xref: MA:0002693 is_a: UBERON:0000060 ! implied link automatically realized ! anatomical wall is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: part_of UBERON:0000160 intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0000160 ! intestine [Term] id: UBERON:0001263 name: pancreatic acinus alt_id: UBERON:FMA_16011-MA_0002417 def: "the secretory units of the exocrine pancreas, where fluid containing digestive enzymes is produced; consists of a group of secretory cells surrounding a luminal space that connects to the pancreatic duct." [MP:0009145] comment: This class was created automatically from a combination of ontologies synonym: "acinus pancreaticus" EXACT [] synonym: "pancreas acinus" EXACT [] synonym: "pancreatic acini" RELATED PLURAL [] xref: BTO:0000028 xref: FMA:16011 xref: MA:0002417 xref: ncithesaurus:Pancreatic_Acinus xref: SCTID:247604006 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0009842 {source="FMA"} ! acinus relationship: part_of UBERON:0000017 {source="MA"} ! exocrine pancreas relationship: part_of UBERON:0007324 {source="FMA"} ! pancreatic lobe [Term] id: UBERON:0001264 name: pancreas alt_id: UBERON:FMA_16017-FMA_16018-FMA_7198-MA_0000120-MA_0001582-MA_0002415-MIAA_0000075-XAO_0000136-XAO_0000137-ZFA_0000140-ZFA_0001249-ZFA_0001260 def: "An endoderm derived structure that produces precursors of digestive enzymes and blood glucose regulating enzymes[GO]. The mature pancreas of higher vertebrates and mammals comprises two major functional units: the exocrine pancreas, which is responsible for the production of digestive enzymes to be secreted into the gut lumen, and the endocrine pancreas, which has its role in the synthesis of several hormones with key regulatory functions in food uptake and metabolism. The exocrine portion constitutes the majority of the mass of the pancreas, and contains only two different cell types, the secretory acinar cells and the ductular cells. The endocrine portion, which comprises only 1–2% of the total mass, contains five different cell types, which are organized into mixed functional assemblies referred to as the islets of Langerhans[PMID]." [GO:0031016, PMID:16417468, Wikipedia:Pancreas] comment: taxon notes: As a secretory organ serving exocrine and endocrine functions, the pancreas is specific to the vertebrates[PMID:16417468] subset: major_organ subset: organ_slim subset: uberon_slim subset: vertebrate_core xref: AAO:0010112 xref: BTO:0000988 xref: EFO:0000855 xref: EHDAA:6893 xref: EHDAA2:0001367 xref: EMAPA:17503 xref: EMAPA:18816 xref: EV:0100092 xref: FMA:7198 xref: GAID:334 xref: galen:Pancreas xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3f/Illu_pancrease.svg/200px-Illu_pancrease.svg.png xref: MA:0000120 xref: MAT:0000075 xref: MESH:A.03.734 xref: MIAA:0000075 xref: ncithesaurus:Pancreas xref: OG:0000050 xref: OpenCyc:Mx4rvVimZZwpEbGdrcN5Y29ycA xref: SCTID:181277001 xref: TAO:0000140 xref: XAO:0000136 xref: ZFA:0000140 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002075 ! viscus relationship: develops_from UBERON:0003922 ! pancreatic bud relationship: develops_from UBERON:0003923 {source="Wikipedia"} ! dorsal pancreatic bud relationship: develops_from UBERON:0003924 {source="Wikipedia"} ! ventral pancreatic bud relationship: part_of UBERON:0000949 ! endocrine system [Term] id: UBERON:0001265 name: trabecula of spleen alt_id: UBERON:FMA_16027-MA_0000758 comment: This class was created automatically from a combination of ontologies synonym: "spleen trabeculum" EXACT [] synonym: "splenic trabecula" EXACT [] xref: FMA:16027 xref: MA:0000758 xref: ncithesaurus:Splenic_Trabecula xref: SCTID:61987002 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000440 ! trabecula relationship: part_of UBERON:0002106 ! spleen [Term] id: UBERON:0001266 name: splenic cord alt_id: UBERON:FMA_16031-MA_0002671 comment: This class was created automatically from a combination of ontologies synonym: "cord of bilroth" EXACT [] xref: FMA:16031 xref: MA:0002671 xref: ncithesaurus:Splenic_Cord is_a: UBERON:0000064 ! organ part is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0001250 ! red pulp of spleen [Term] id: UBERON:0001267 name: femoral nerve alt_id: UBERON:FMA_16486-MA_0001167 def: "The femoral nerve, the largest branch of the lumbar plexus, arises from the ventral divisions of the second, third, and fourth lumbar nerves. It descends through the fibers of the Psoas major, emerging from the muscle at the lower part of its lateral border, and passes down between it and the Iliacus, behind the iliac fascia; it then runs beneath the inguinal ligament, into the thigh, and splits into an anterior and a posterior division. Under the inguinal ligament, it is separated from the femoral artery by a portion of the Psoas major. [WP,unvetted]." [Wikipedia:Femoral_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "anterior crural nerve" EXACT [] xref: EHDAA:5655 xref: EHDAA2:0000507 xref: FMA:16486 xref: GAID:850 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7c/Gray823.png/200px-Gray823.png xref: MA:0001167 xref: MESH:A.08.800.800.720.450.250 xref: ncithesaurus:Femoral_Nerve xref: OG:0001411 xref: OpenCyc:Mx4rwGC03JwpEbGdrcN5Y29ycA xref: SCTID:181051004 is_a: UBERON:0002003 ! peripheral nerve is_a: UBERON:0003431 ! implied link automatically realized ! leg nerve relationship: part_of UBERON:0000978 ! leg [Term] id: UBERON:0001268 name: peritoneal fluid alt_id: UBERON:FMA_16515-MA_0002531 def: "Transudate contained in the peritoneal cavity.[FMA]" [FMA:FMA, Wikipedia:Peritoneal_fluid] subset: uberon_slim xref: BTO:0001031 xref: FMA:16515 xref: MA:0002531 xref: ncithesaurus:Peritoneal_Fluid is_a: UBERON:0000463 ! implied link automatically realized ! portion of organism substance relationship: part_of UBERON:0001179 intersection_of: UBERON:0000463 ! portion of organism substance intersection_of: part_of UBERON:0001179 ! peritoneal cavity [Term] id: UBERON:0001269 name: acetabular part of hip bone alt_id: UBERON:FMA_16579-MA_0001335 def: "The acetabulum is a concave surface of the pelvis. The head of the femur meets with the pelvis at the acetabulum, forming the hip joint. There are three bones of the os coxae (hip bone) that come together to form the acetabulum. Contributing a little more than two-fifths of the structure is the ischium, which provides lower and side boundaries to the acetabulum. The ilium forms the upper boundary, providing a little less than two-fifths of the structure of the acetabulum. The rest is formed by the pubis, near the midline. It is bounded by a prominent uneven rim, which is thick and strong above, and serves for the attachment of the acetabular labrum, which reduces its opening, and deepens the surface for formation of the hip joint. At the lower part of the acetabulum is the acetabular notch, which is continuous with a circular depression, the acetabular fossa, at the bottom of the cavity of the acetabulum. The rest of the acetabulum is formed by a curved, crescent-moon shaped surface, the lunate surface, where the joint is made with the head of the femur. Its counterpart in the pectoral girdle is the glenoid fossa.[WP,unvetted]." [Wikipedia:Acetabulum] comment: In reptiles and in birds, the acetabula are deep sockets.[WP] Note that whilst WP defines this as a surface, MA treats it as a bone. There are other FMA classes that may be better suited to representing the surface. subset: uberon_slim synonym: "acetabulum" EXACT [] xref: AAO:0000770 xref: EHDAA:10661 xref: EHDAA2:0001427 xref: FMA:16579 xref: GAID:206 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/Illu_pelvic_girdle.jpg/200px-Illu_pelvic_girdle.jpg xref: MA:0001335 xref: MESH:A.02.835.232.611.108 xref: ncithesaurus:Acetabulum xref: OpenCyc:Mx4rwJlP9ZwpEbGdrcN5Y29ycA xref: SCTID:182027007 is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ relationship: part_of UBERON:0001486 {source="FMA"} ! hip joint [Term] id: UBERON:0001270 name: bony pelvis alt_id: UBERON:FMA_16580-MA_0000532 def: "In humans, the ring of bone formed by the sacrum and the first few coccygeal vertebrae as the roof, the pubis and ischia as the floor and the ilia and the acetabular part of the ischia as the walls." [http://medical-dictionary.thefreedictionary.com/bony+pelvis] comment: in FMA, this is part of the axial skeletal system. todo: add taxon-specific part of relations connecting sub-structures to this. xref: FMA:16580 xref: SCTID:46633002 is_a: UBERON:0000075 ! subdivision of skeletal system [Term] id: UBERON:0001271 name: pelvic girdle alt_id: UBERON:FMA_16581-MA_0000293-MIAA_0000182-XAO_0003064-ZFA_0000565 def: "Subdivision of lower limb or fin which links the limb/fin to the body[FMA,modified]." [FMA:16581, http://onlinelibrary.wiley.com/doi/10.1002/dvdy.22617/full, https://groups.google.com/d/topic/obo-anatomy/h4R4xKmINrw/discussion] comment: Note that this class describes the subdivision of the limb/fin, NOT the skeleton within. See also: skeleton of pectoral girdle (UBERON:0007831). See also comments on obo-anatomy mail list subset: uberon_slim subset: vertebrate_core synonym: "girdle - pelvic" EXACT [] synonym: "pelvic girdle region" EXACT [] xref: FMA:16581 xref: ncithesaurus:Pelvic_Girdle xref: SCTID:360010001 is_a: UBERON:0007823 {source="FMA"} ! limb/fin girdle relationship: part_of UBERON:0004709 intersection_of: UBERON:0007823 ! limb/fin girdle intersection_of: part_of UBERON:0004709 ! limb/fin of posterior region of body [Term] id: UBERON:0001272 name: pelvic bone alt_id: UBERON:FMA_16585-ZFA_0000623 def: "The hip bone, innominate bone or coxal bone is a large, flattened, irregularly shaped bone, constricted in the center and expanded above and below. It has one of the few ball and socket synovial joints in the body – the so called hip joint. It meets its fellow on the opposite side in the middle line in front, and together they form the sides and anterior wall of the pelvic cavity. Together with the sacrum and coccyx, it comprises the pelvis. [WP,unvetted]." [Wikipedia:Hip_bone] comment: The hip bone first appears in fishes, where it consists of a simple, usually triangular bone, to which the pelvic fin articulates. The hip bones on each side usually connect with each other at the forward end, and are even solidly fused in lungfishes and sharks, but they never attach to the vertebral column[WP] subset: uberon_slim synonym: "basipterygium" EXACT [] synonym: "bone of pelvic girdle" EXACT [] synonym: "coxal bone" EXACT [] synonym: "hip bone" EXACT [] synonym: "innominate bone" EXACT [] synonym: "os coxae" EXACT [FMA:16585, FMA:TA] xref: FMA:16585 xref: GAID:205 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Gray341.png/200px-Gray341.png xref: MESH:A.02.835.232.611 xref: ncithesaurus:Pelvic_Bone xref: SCTID:361776002 is_a: UBERON:0001474 ! bone is_a: UBERON:0002428 ! implied link automatically realized ! limb bone is_a: UBERON:0007830 ! implied link automatically realized ! pelvic girdle bone/zone relationship: part_of UBERON:0001464 {source="FMA"} ! hip relationship: part_of UBERON:0007832 ! skeleton of pelvic girdle [Term] id: UBERON:0001273 name: ilium alt_id: UBERON:FMA_16589-MA_0001336 def: "The ilium is the uppermost and largest bone of the pelvis, and appears in most vertebrates including mammals and birds, but not bony fish. All reptiles have an ilium except snakes, although some snake species have a tiny bone which is considered to be an ilium[WP]." [Wikipedia:Ilium_(bone)] comment: Note that this is_a hip bone in MA subset: uberon_slim synonym: "os iliacum" EXACT [] synonym: "os ilii" EXACT [] xref: AAO:0000772 xref: EFO:0003049 xref: FMA:16589 xref: GAID:207 xref: galen:Ilium xref: MA:0001336 xref: MESH:A.02.835.232.611.434 xref: ncithesaurus:Ilium xref: OpenCyc:Mx4rvhwFJ5wpEbGdrcN5Y29ycA xref: SCTID:182029005 is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ is_a: UBERON:0007830 {source="MA"} ! pelvic girdle bone/zone is_a: UBERON:0008202 {source="MA"} ! bone of hip region relationship: part_of UBERON:0001271 ! pelvic girdle relationship: part_of UBERON:0001272 {source="FMA"} ! pelvic bone [Term] id: UBERON:0001274 name: ischium alt_id: UBERON:FMA_16592-MA_0001337 def: "The ischium forms the lower and back part of the hip bone (os coxae). Situated below the ilium and behind the pubis, it is one of these three bones whose fusion creates the coxa. It is divisible into three portions: Body of ischium - the portion that supports weight while sitting (especially noticeable on a hard surface). Superior ramus of the ischium Inferior ramus of the ischium It is the strongest of the coxal bones. Clinically, avulsion fracture of the ischial apophysis may occur. [WP,unvetted]." [Wikipedia:Ischium] comment: Note that this is_a hip bone in MA subset: uberon_slim xref: AAO:0000860 xref: FMA:16592 xref: GAID:208 xref: galen:Ischium xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/Illu_pelvic_girdle.jpg/200px-Illu_pelvic_girdle.jpg xref: MA:0001337 xref: MESH:A.02.835.232.611.548 xref: ncithesaurus:Ischium xref: OpenCyc:Mx4rvlzMKpwpEbGdrcN5Y29ycA xref: SCTID:182025004 is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ is_a: UBERON:0007830 {source="MA"} ! pelvic girdle bone/zone is_a: UBERON:0008202 {source="MA"} ! bone of hip region relationship: part_of UBERON:0001271 ! pelvic girdle relationship: part_of UBERON:0001272 ! pelvic bone [Term] id: UBERON:0001275 name: pubis alt_id: UBERON:FMA_16595-MA_0001338 def: "the ventral and anterior of the three principal bones composing either half of the pelvis. it is covered by a layer of fat, which is covered by the mons pubis. It is divisible into a body, a superior ramus and an inferior ramus. The body forms one-fifth of the acetabulum, contributing by its external surface both to the lunate surface and the acetabular fossa. Its internal surface enters into the formation of the wall of the lesser pelvis and gives origin to a portion of the obturator internus. In the female, the pubic bone is anterior to the urethral sponge. The left and right hip bones join at the pubic symphysis. The pubis is the lower limit of the suprapubic region[WP]." [Wikipedia:Pubis_(bone)] comment: Note that this is_a hip bone in MA subset: uberon_slim synonym: "os pubis" RELATED [Wikipedia:Pubis_%28bone%29] synonym: "pubic bone" RELATED [Wikipedia:Pubis_%28bone%29] synonym: "pubis bone" RELATED [Wikipedia:Pubis_%28bone%29] xref: AAO:0000861 xref: EMAPA:18728 xref: FMA:16595 xref: galen:Pubis xref: MA:0001338 xref: MESH:A.02.835.232.611.781 xref: ncithesaurus:Pubic_Bone xref: SCTID:182035005 is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ is_a: UBERON:0007830 {source="MA"} ! pelvic girdle bone/zone is_a: UBERON:0008202 {source="MA"} ! bone of hip region relationship: part_of UBERON:0001271 {source="EMAPA"} ! pelvic girdle relationship: part_of UBERON:0001272 {source="FMA"} ! pelvic bone [Term] id: UBERON:0001276 name: epithelium of stomach alt_id: UBERON:FMA_17091-MA_0001610 def: "the epithelial layer of the stomach ." [MP:0000471] comment: in FMA this is classified as simple columnar, MA divides this into squamous and glandular synonym: "epithelial tissue of stomach" EXACT [OBOL:automatic] synonym: "epithelial tissue of ventriculus" EXACT [OBOL:automatic] synonym: "epithelium of ventriculus" EXACT [OBOL:automatic] synonym: "gastric epithelium" RELATED [BTO:0000500] synonym: "stomach epithelial tissue" EXACT [OBOL:automatic] synonym: "stomach epithelium" EXACT [OBOL:automatic] synonym: "ventriculus epithelial tissue" EXACT [OBOL:automatic] synonym: "ventriculus epithelium" EXACT [OBOL:automatic] xref: BTO:0000500 xref: EHDAA2:0001918 xref: FMA:17091 xref: MA:0001610 xref: OG:0001433 xref: SCTID:64977002 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000485 ! simple columnar epithelium is_a: UBERON:0003350 ! implied link automatically realized ! epithelium of mucosa is_a: UBERON:0003929 ! implied link automatically realized ! gut epithelium is_a: UBERON:0004808 ! implied link automatically realized ! gastrointestinal system epithelium relationship: part_of UBERON:0000945 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000945 ! stomach relationship: part_of UBERON:0001199 ! mucosa of stomach [Term] id: UBERON:0001277 name: intestinal epithelium alt_id: UBERON:FMA_17229-ZFA_0005124 def: "Simple columnar epithelium that lines the intestine, sometimes pseudostratified, with absorptive brush-border cells and mucous goblet cells clearly visible. Crosnier et al. 2005" [Wikipedia:Intestinal_epithelium, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "bowel epithelial tissue" EXACT [OBOL:automatic] synonym: "bowel epithelium" EXACT [OBOL:automatic] synonym: "epithelial tissue of bowel" EXACT [OBOL:automatic] synonym: "epithelial tissue of intestine" EXACT [OBOL:automatic] synonym: "epithelium of bowel" EXACT [OBOL:automatic] synonym: "epithelium of intestine" EXACT [OBOL:automatic] synonym: "intestine epithelial tissue" EXACT [OBOL:automatic] synonym: "intestine epithelium" RELATED [] synonym: "villous epithelium" EXACT [ZFA:0005124] xref: BTO:0000781 xref: FMA:17229 xref: MA:0001536 xref: ncithesaurus:Intestinal_Epithelium xref: SCTID:266135004 xref: TAO:0005124 xref: ZFA:0005124 is_a: UBERON:0000485 ! simple columnar epithelium is_a: UBERON:0003350 ! implied link automatically realized ! epithelium of mucosa is_a: UBERON:0003929 ! implied link automatically realized ! gut epithelium is_a: UBERON:0004808 ! implied link automatically realized ! gastrointestinal system epithelium relationship: part_of UBERON:0000160 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000160 ! intestine relationship: part_of UBERON:0001242 ! intestinal mucosa [Term] id: UBERON:0001278 name: epithelium of large intestine alt_id: UBERON:FMA_17301-MA_0001545 def: "An epithelium that is part of a large intestine [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "epithelial tissue of large intestine" EXACT [OBOL:automatic] synonym: "large intestinal epithelium" EXACT [] synonym: "large intestine epithelial tissue" EXACT [OBOL:automatic] synonym: "large intestine epithelium" EXACT [] xref: EMAPA:19257 xref: EMAPA:19262 xref: FMA:17301 xref: MA:0001545 is_a: UBERON:0001277 ! intestinal epithelium relationship: part_of UBERON:0000059 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000059 ! large intestine relationship: part_of UBERON:0001207 ! mucosa of large intestine [Term] id: UBERON:0001279 name: portal triad alt_id: UBERON:FMA_17523-MA_0002499 def: "a component of the hepatic lobule, that consists of: hepatic artery, hepatic portal vein, bile duct, lymphatic vessels, and the branch of the vagus nerve." [Wikipedia:Portal_triad] comment: The misnomer "portal triad" traditionally has included only the first three structures, and was named before lymphatic vessels were discovered in the structure. It can refer both to the largest branch of each of these vessels running inside the hepatoduodenal ligament, and to the smaller branches of these vessels inside the liver. subset: uberon_slim synonym: "trias hepatica" EXACT [] xref: FMA:17523 xref: MA:0002499 xref: ncithesaurus:Portal_Triad xref: SCTID:362192000 is_a: UBERON:0000064 ! organ part is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0001172 ! hepatic acinus [Term] id: UBERON:0001280 name: liver parenchyma alt_id: UBERON:0003223 alt_id: UBERON:FMA_17540-MA_0000366 def: "the functional units of the liver including the lobules." [MP:0008986] comment: This class was created automatically from a combination of ontologies synonym: "hepatic parenchyma" EXACT [FMA:17540] synonym: "hepatic parenchyme" RELATED [OG:0000539] synonym: "liver parenchyme" EXACT [XAO:0000454] synonym: "parenchyma of liver" EXACT [FMA:17540] xref: AAO:0010405 xref: EHDAA:2201 xref: EHDAA2:0001004 xref: EMAPA:17203 xref: FMA:17540 xref: MA:0000366 xref: OG:0000539 xref: SCTID:363535004 xref: XAO:0000454 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000353 ! implied link automatically realized ! parenchyma relationship: part_of UBERON:0002107 intersection_of: UBERON:0000353 ! parenchyma intersection_of: part_of UBERON:0002107 ! liver relationship: develops_from UBERON:0008835 {source="XAO"} ! hepatic diverticulum [Term] id: UBERON:0001281 name: hepatic sinusoid alt_id: UBERON:0003275 alt_id: UBERON:FMA_17543-MA_0000367-ZFA_0005091 def: "Wide thin-walled blood vessels in the liver. In mammals they have neither veinous or arterial markers." [Wikipedia:Hepatic_sinusoid, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "hepatic sinusoids" RELATED [] synonym: "liver sinusoid" EXACT [] synonym: "liver sinusoidal blood vessel" EXACT [OBOL:automatic] synonym: "sinusoid of liver" EXACT [OBOL:automatic] synonym: "sinusoidal blood vessel of liver" EXACT [OBOL:automatic] synonym: "vas capillare sinusoideum" EXACT [] xref: EHDAA:2199 xref: EHDAA:3997 xref: EHDAA:4003 xref: EHDAA:6992 xref: EHDAA:8084 xref: EHDAA2:0000999 xref: EMAPA:17365 xref: FMA:17543 xref: MA:0000367 xref: ncithesaurus:Hepatic_Sinusoid xref: OG:0000708 xref: SCTID:67435004 xref: TAO:0005091 xref: ZFA:0005091 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003497 ! implied link automatically realized ! abdomen blood vessel is_a: UBERON:0003909 ! sinusoid is_a: UBERON:0005911 ! implied link automatically realized ! endo-epithelium relationship: part_of UBERON:0002107 intersection_of: UBERON:0003909 ! sinusoid intersection_of: part_of UBERON:0002107 ! liver relationship: part_of UBERON:0002107 ! liver relationship: part_of UBERON:0004647 ! liver lobule [Term] id: UBERON:0001282 name: intralobular bile duct alt_id: UBERON:FMA_17545-MA_0002669 def: "The Canals of Hering, or intrahepatic bile ductules, are part of the outflow system of exocrine bile product from the liver." [Wikipedia:Canals_of_Hering] comment: Editor notes: Note that this is part of the intrahepatic bile duct in MA, as this class is more alike the tree in FMA. Note also that SCT has canal of Hering and Entire IBduct as the only sibling terms under 'Structure of intralobular bile duct' (i.e. the CoH is the only part of the entire IBduct) subset: uberon_slim synonym: "canal of Hering" RELATED [] synonym: "canal of Herring" EXACT [FMA:17545] synonym: "canals of Hering" RELATED PLURAL [Wikipedia:Canals_of_Hering] synonym: "cholangiole" EXACT [FMA:17545] synonym: "cholangiole" EXACT [] synonym: "duct of Herring" RELATED [Wikipedia:Canals_of_Hering] synonym: "intrahepatic bile ductule" RELATED [Wikipedia:Canals_of_Hering] xref: BTO:0002840 xref: FMA:17545 xref: MA:0002669 xref: ncithesaurus:Canal_of_Hering xref: SCTID:227002 xref: SCTID:269922006 is_a: UBERON:0003704 {source="FMA"} ! intrahepatic bile duct relationship: part_of UBERON:0001172 {source="FMA"} ! hepatic acinus relationship: part_of UBERON:0004647 {source="FMA"} ! liver lobule [Term] id: UBERON:0001283 name: bile canaliculus alt_id: UBERON:FMA_17547-MA_0002495 def: "Fine tubular canals running between liver cells, throughout the parenchyma, usually occurring singly between each adjacent pair of cells, and forming a three-dimensional network of polyhedral meshes, with a single cell in each mesh[BTO]. A thin tube that collects bile secreted by hepatocytes. The bile canaliculi merge and form bile ductules, which eventually become common hepatic duct. Hepatocytes are polyhedral in shape, therefore having no set shape or design. They have surfaces facing the sinusoids, (called sinusoidal faces) and surfaces which contact other hepatocytes, (called lateral faces). Bile canaliculi are formed by grooves on some of the lateral faces of these hepatocytes. Microvilli are present in the canaliculi but are sparse. [WP,unvetted]." [BTO:0002841, Wikipedia:Bile_canaliculus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "bile canaliculi" RELATED PLURAL [Wikipedia:Bile_canaliculus] synonym: "bile capillary" RELATED [BTO:0002841] synonym: "biliary canaliculus" RELATED [BTO:0002841] xref: BTO:0002841 xref: FMA:17547 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d9/Gray1094.png/200px-Gray1094.png xref: MA:0002495 xref: MESH:A.03.159.183.158.125 xref: ncithesaurus:Bile_Canaliculus xref: SCTID:270023005 xref: ZFA:0005163 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0001172 {source="FMA"} ! hepatic acinus relationship: part_of UBERON:0002394 {source="BTO"} ! bile duct relationship: part_of UBERON:0004647 {source="FMA"} ! liver lobule relationship: part_of UBERON:0005452 {source="FMA"} ! hepatic plate [Term] id: UBERON:0001284 name: renal column alt_id: UBERON:FMA_17633-MA_0001651 def: "The renal column (or Bertin column, or column of Bertin) is a medullary extension of the renal cortex in between the renal pyramids. It allows the cortex to be better anchored. Each column consists of lines of blood vessels and urinary tubes and a fibrous material. [WP,unvetted]." [Wikipedia:Renal_column] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "renal column of bertini" EXACT [] xref: FMA:17633 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c0/Illu_kidney2.jpg/200px-Illu_kidney2.jpg xref: MA:0001651 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002189 ! outer cortex of kidney [Term] id: UBERON:0001285 name: nephron alt_id: UBERON:FMA_17640-MA_0000375-XAO_0000145 def: "The basic functional unit of the kidney. its chief function is to regulate the concentration of water and soluble substances like sodium salts by filtering the blood, reabsorbing what is needed and excreting the rest as urine. A nephron eliminates wastes from the body, regulates blood volume and blood pressure, controls levels of electrolytes and metabolites, and regulates blood pH. Its functions are vital to life and are regulated by the endocrine system by hormones such as antidiuretic hormone, aldosterone, and parathyroid hormone.[WP]" [PMID:9268568, Wikipedia:Nephron] comment: Editor note: kidney terms require review for cross-vertebrate compatibility and developmental relationships. Taxon notes: In the avian kidney, three types of nephron are identified: mammalian-type nephrons with long and short loops of Henle, and reptilian type nephrons (Gambaryan, 1992)[GO Kidney] subset: uberon_slim subset: vertebrate_core synonym: "mature nephron" NARROW [EMAPA:28491] xref: BTO:0000924 xref: EMAPA:28491 xref: EV:0100384 xref: FMA:17640 xref: GAID:428 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/27/Gray1128.png/200px-Gray1128.png xref: MA:0000375 xref: MESH:A.05.810.453.736 xref: ncithesaurus:Nephron xref: SCTID:361337001 xref: ZFA:0005282 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: develops_from UBERON:0003220 {source="Wikipedia"} ! metanephric mesenchyme relationship: part_of UBERON:0007684 {source="FMA"} ! uriniferous tubule [Term] id: UBERON:0001286 name: Bowman's space alt_id: UBERON:FMA_17676-MA_0001664 def: "a narrow chalice-shaped cavity between the glomerular and capsular epithelium of the glomerular capsule of the kidney[TFD]. Between the visceral and parietal layers, into which the filtrate enters after passing through the podocytes' filtration slits[WP]. luminal region between the glomerular capsule visceral and parietal layers, into which filtrate enters after passing through the filtration barrier from the glomerular capillaries[MP]" [http://medical-dictionary.thefreedictionary.com/bowman's+space, MP:0011499, Wikipedia:Bowman's_space] comment: TODO - fix ZFA subset: uberon_slim subset: vertebrate_core synonym: "bowman's space" EXACT [] synonym: "capsular space" EXACT [http://medical-dictionary.thefreedictionary.com/bowman's+space] synonym: "glomerular urinary space" EXACT [MP:0011499] synonym: "inter-glomerular space" EXACT [ZFA:0005283] synonym: "inter-glomerular space" EXACT [ZFA:0005312] synonym: "pronephric capsular space" EXACT [ZFA:0005312] synonym: "renal capsular space" EXACT [ZFA:0005283] synonym: "urinary space" EXACT [] synonym: "urinary space of renal corpuscle" EXACT [EMAPA:28263] xref: EMAPA:27985 xref: EMAPA:28263 xref: FMA:17676 xref: MA:0001664 xref: ncithesaurus:Urinary_Space xref: SCTID:244284006 xref: ZFA:0005283 xref: ZFA:0005312 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0001230 ! glomerular capsule [Term] id: UBERON:0001287 name: proximal convoluted tubule alt_id: UBERON:FMA_17693-MA_0001669-ZFA_0001620 def: "The proximal tubule is the portion of the duct system of the nephron of the kidney which leads from Bowman's capsule to the loop of Henle[WP]" [Wikipedia:Proximal_convoluted_tubule] comment: TODO - cleanly define difference between proximal tubule and proximal convoluted tubule. Make definition applicable across species. subset: uberon_slim subset: vertebrate_core synonym: "1st convoluted tubule" RELATED [] synonym: "first convoluted tubule" RELATED [] synonym: "PCT" RELATED [] synonym: "proximal convoluted renal tubule" EXACT [] synonym: "tubulus contortus proximalis" EXACT [] xref: EMAPA:28287 xref: EV:0100388 xref: FMA:17693 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/27/Gray1128.png/200px-Gray1128.png xref: MA:0001669 xref: SCTID:362220008 xref: ZFA:0005290 is_a: UBERON:0004134 ! proximal tubule is_a: UBERON:0006534 ! renal convoluted tubule relationship: develops_from UBERON:0003220 {source="Wikipedia"} ! metanephric mesenchyme relationship: part_of UBERON:0001225 {notes="checkme"} ! cortex of kidney [Term] id: UBERON:0001288 name: loop of Henle alt_id: UBERON:FMA_17698-MA_0001675 def: "Portion of the nephron that leads from the proximal convoluted tubule to the distal convoluted tubule. The loop has a hairpin bend in the renal medulla. The main function of this structure is to create a concentration gradient in the medulla of the kidney. By means of a countercurrent multiplier system, which utilizes sodium pumps, it creates an area of high sodium concentration deep in the medulla, near the collecting duct. Water present in the filtrate in the collecting duct flows through aquaporin channels out of the collecting duct, moving passively down its concentration gradient. This process reabsorbs water and creates a concentrated urine for excretion[WP]." [Wikipedia:Loop_of_henle] comment: Note that the definitions of some kidney parts refer to Henle's loop, even in species where this may not be present. Requires review. subset: uberon_slim synonym: "Henle loop" EXACT [] synonym: "henle's loop" EXACT [] xref: BTO:0004608 xref: EMAPA:29665 xref: EMAPA:29679 xref: EV:0100390 xref: FMA:17698 xref: GAID:437 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/27/Gray1128.png/200px-Gray1128.png xref: MA:0001675 xref: MESH:A.05.810.453.736.560.610 xref: ncithesaurus:Loop_of_Henle xref: OG:0001270 xref: SCTID:361335009 is_a: UBERON:0007685 ! implied link automatically realized ! region of nephron tubule relationship: continuous_with UBERON:0001287 relationship: continuous_with UBERON:0001292 intersection_of: UBERON:0007685 ! region of nephron tubule intersection_of: continuous_with UBERON:0001287 ! proximal convoluted tubule intersection_of: continuous_with UBERON:0001292 ! distal convoluted tubule [Term] id: UBERON:0001289 name: descending limb of loop of Henle alt_id: UBERON:FMA_17705-MA_0001679 def: "Portion of the renal tubule constituting the first part of the loop of Henle[WP]." [Wikipedia:Descending_limb_of_loop_of_henle] subset: uberon_slim synonym: "descending limb" BROAD [] synonym: "descending limb of Henle's loop" EXACT [] synonym: "loop of Henle descending limb" EXACT [] xref: FMA:17705 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/27/Gray1128.png/200px-Gray1128.png xref: MA:0001679 xref: ncithesaurus:Descending_Limb_of_the_Henle_s_Loop xref: SCTID:245350001 is_a: UBERON:0007685 {source="FMA"} ! region of nephron tubule relationship: part_of UBERON:0001288 {source="FMA"} ! loop of Henle [Term] id: UBERON:0001290 name: proximal straight tubule alt_id: UBERON:0005166 alt_id: UBERON:FMA_17716-MA_0002614-ZFA_0001621 def: "part of the descending limb of the renal tubule, extending from the proximal convoluted tubule to the thin tubule[BTO]." [BTO:0000055, Wikipedia:Proximal_straight_tubule] comment: TODO - is S3 exactly coincident with PST? Check also relationship to DL. todo - ensure relationships work across species (loop of Henle) subset: uberon_slim subset: vertebrate_core synonym: "pars recta" RELATED [] synonym: "pars recta tubuli renalis" RELATED [BTO:0000055] synonym: "proximal tubule segment 3" RELATED [MA:0002614] synonym: "S3" EXACT [GO:0072020] synonym: "thick descending limb of proximal tubule" EXACT [] synonym: "tubulus rectus proximalis" EXACT [] xref: BTO:0000055 xref: EMAPA:29661 xref: FMA:17716 xref: MA:0002614 xref: ZFA:0005291 is_a: UBERON:0006853 ! implied link automatically realized ! renal cortex tubule is_a: UBERON:0007685 {source="FMA"} ! region of nephron tubule is_a: UBERON:0008404 ! implied link automatically realized ! proximale tubular epithelium relationship: part_of UBERON:0001289 {source="MA"} ! descending limb of loop of Henle relationship: part_of UBERON:0004134 {source="MA-isa"} ! proximal tubule relationship: part_of UBERON:0006542 {source="MA"} ! outer medulla outer stripe loop of henle [Term] id: UBERON:0001291 name: thick ascending limb of loop of Henle alt_id: UBERON:FMA_17717-MA_0001676 def: "a segment of the nephron in the kidney. It can be divided into two parts: that in the renal medulla, and that in the renal cortex[Wikipedia:Thick_ascending_limb_of_loop_of_Henle]." [Wikipedia:Thick_ascending_limb_of_loop_of_Henle] comment: TODO: thick/thin check. Also - does the loop of Henle overlap the distal convoluted tubule? FMA divides DCT into straight and convoluted portions subset: uberon_slim synonym: "ascending thick limb" EXACT [] synonym: "distal straight tubule" EXACT [] synonym: "loop of Henle ascending limb thick segment" EXACT [MA:0001677] synonym: "straight portion of distal convoluted renal tubule" EXACT [] synonym: "straight portion of distal convoluted tubule" EXACT [FMA:17722] synonym: "thick ascending limb" EXACT [] synonym: "thick ascending limb of distal tubule" EXACT [FMA:17722] synonym: "thick ascending limb of Henle's loop" EXACT [] synonym: "tubulus rectus distalis" EXACT [FMA:17722] xref: EMAPA:28396 xref: EMAPA:29671 xref: FMA:17722 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/27/Gray1128.png/200px-Gray1128.png xref: MA:0001677 xref: SCTID:244953001 is_a: UBERON:0004135 ! distal tubule is_a: UBERON:0008408 ! implied link automatically realized ! distal tubular epithelium relationship: part_of UBERON:0005164 ! ascending limb of loop of Henle [Term] id: UBERON:0001292 name: distal convoluted tubule alt_id: UBERON:FMA_17721-MA_0001666 def: "a portion of kidney nephron between the loop of Henle and the collecting duct system." [Wikipedia:Distal_convoluted_tubule] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "distal convoluted renal tubule" EXACT [] synonym: "second convoluted tubule" RELATED [] synonym: "tubulus contortus distalis" EXACT [] xref: EMAPA:28393 xref: EV:0100389 xref: FMA:17721 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/21/Kidney_nephron.png/200px-Kidney_nephron.png xref: MA:0001666 xref: ncithesaurus:Distal_Convoluted_Tubule xref: SCTID:361336005 is_a: UBERON:0004135 ! distal tubule is_a: UBERON:0006534 ! renal convoluted tubule is_a: UBERON:0006853 ! implied link automatically realized ! renal cortex tubule relationship: develops_from UBERON:0003220 ! metanephric mesenchyme relationship: part_of UBERON:0001225 ! cortex of kidney relationship: part_of UBERON:0007685 ! region of nephron tubule [Term] id: UBERON:0001293 name: outer medulla of kidney alt_id: UBERON:FMA_17733-MA_0001653 comment: This class was created automatically from a combination of ontologies synonym: "kidney outer medulla" RELATED [BTO:0001746] synonym: "outer renal medulla" EXACT [] synonym: "outer zone of medulla of kidney" EXACT [] synonym: "outer zone of renal medulla" EXACT [] synonym: "renal outer medulla" EXACT [BTO:0001746] synonym: "zona externa (medullaris renalis)" EXACT [FMA:17733, FMA:TA] xref: BTO:0001746 xref: EMAPA:28310 xref: FMA:17733 xref: MA:0001653 is_a: UBERON:0000064 ! organ part is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0000362 ! renal medulla relationship: part_of UBERON:0002113 ! kidney [Term] id: UBERON:0001294 name: inner medulla of kidney alt_id: UBERON:FMA_17734-MA_0001652 comment: This class was created automatically from a combination of ontologies synonym: "inner renal medulla" EXACT [] synonym: "inner zone of medulla of kidney" EXACT [] synonym: "inner zone of renal medulla" EXACT [] synonym: "kidney inner medulla" RELATED [BTO:0001745] synonym: "renal inner medulla" EXACT [BTO:0001745] synonym: "set of inner region of renal pyramids" EXACT [] synonym: "zona interna (medullaris renalis)" EXACT [FMA:17734, FMA:TA] xref: BTO:0001745 xref: EMAPA:28349 xref: FMA:17734 xref: MA:0001652 is_a: UBERON:0000064 ! organ part is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0000362 ! renal medulla relationship: part_of UBERON:0002113 ! kidney [Term] id: UBERON:0001295 name: endometrium alt_id: UBERON:FMA_17742-MA_0000390-MIAA_0000319 def: "inner membrane of the mammalian uterus." [Wikipedia:Endometrium] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "tunica mucosa (endometrium)" EXACT [] xref: BTO:0001422 xref: EFO:0000980 xref: EMAPA:29917 xref: EV:0100115 xref: FMA:17742 xref: GAID:377 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Illu_cervix.jpg/200px-Illu_cervix.jpg xref: MA:0000390 xref: MAT:0000319 xref: MESH:A.05.360.319.679.490 xref: MIAA:0000319 xref: ncithesaurus:Endometrium xref: OG:0001285 xref: SCTID:278867007 is_a: UBERON:0004923 ! organ component layer is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0000995 ! uterus [Term] id: UBERON:0001296 name: myometrium alt_id: UBERON:FMA_17743-MA_0000391 def: "middle layer of the uterine wall consisting of smooth muscle cells and supporting stromal and vascular tissue." [http://en.wikipedia.org/wiki/Myometrium, Wikipedia:Myometrium] comment: The inner layer of the uterine wall is the endometrium or uterine lining, and the outer layer the serosa or perimetrium. The myometrium stretches (the smooth muscle cells expand in both size and number[1]) during pregnancy to allow for the harboring of the pregnancy, and contracts in a coordinated fashion during the process of labor. After delivery the myometrium contracts to expel the placenta and reduce blood loss. subset: uberon_slim synonym: "tunica muscularis (myometrium)" EXACT [] synonym: "uterine smooth muscle" RELATED [] xref: BTO:0000907 xref: EFO:0001970 xref: EMAPA:29923 xref: EV:0100116 xref: FMA:17743 xref: GAID:171 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Illu_cervix.jpg/200px-Illu_cervix.jpg xref: MA:0000391 xref: MESH:A.02.633.570.500 xref: MeSH:D009215 xref: ncithesaurus:Myometrium xref: OG:0001281 xref: SCTID:279879004 is_a: UBERON:0001135 ! smooth muscle tissue is_a: UBERON:0004923 ! organ component layer is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0000995 ! uterus relationship: surrounded_by UBERON:0001297 ! serosa of uterus relationship: surrounds UBERON:0001295 ! endometrium [Term] id: UBERON:0001297 name: serosa of uterus alt_id: UBERON:FMA_17744-MA_0001729 def: "Outer serosa layer of the uterus." [Wikipedia:Perimetrium] comment: TODO - check for parallel structure with peritoneum synonym: "perimetrium" EXACT [http://en.wikipedia.org/wiki/Perimetrium] synonym: "serous coat of uterus" EXACT [] synonym: "serous membrane of uterus" EXACT [OBOL:automatic] synonym: "tunica serosa (perimetrium)" EXACT [] synonym: "tunica serosa uteri" EXACT [FMA:17744, FMA:TA] synonym: "uterine serosa" EXACT [] synonym: "uterus serosa" EXACT [] synonym: "uterus serous membrane" EXACT [OBOL:automatic] synonym: "visceral peritoneum of uterus" EXACT [] xref: FMA:17744 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Illu_cervix.jpg/200px-Illu_cervix.jpg xref: MA:0001729 xref: ncithesaurus:Perimetrium xref: SCTID:253705006 is_a: UBERON:0000042 ! serous membrane is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0000995 intersection_of: UBERON:0000042 ! serous membrane intersection_of: part_of UBERON:0000995 ! uterus relationship: part_of UBERON:0000995 ! uterus [Term] id: UBERON:0001298 name: psoas major alt_id: UBERON:FMA_18060-MA_0002358 def: "The psoas major is a long fusiform muscle placed on the side of the lumbar region of the vertebral column and brim of the lesser pelvis. It joins the iliacus muscle to form the iliopsoas. In less than 50 per cent of subjects the psoas major is accompanied by the psoas minor. [WP,unvetted]." [Wikipedia:Psoas_major] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "psoas major muscle" EXACT [] xref: BTO:0001877 xref: EMAPA:18169 xref: FMA:18060 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e2/Anterior_Hip_Muscles_2.PNG/200px-Anterior_Hip_Muscles_2.PNG xref: MA:0002358 xref: ncithesaurus:Psoas_Major xref: OpenCyc:Mx4rwU5ZfZwpEbGdrcN5Y29ycA xref: SCTID:244952006 is_a: UBERON:0008450 {source="MA"} ! psoas relationship: part_of UBERON:0000475 ! organism subdivision [Term] id: UBERON:0001299 name: glans penis alt_id: UBERON:FMA_18247-MA_0002726 def: "The glans penis (or simply glans) is the sensitive bulbous structure at the distal end of the penis. It is also commonly referred to as the 'head' of the penis. Slang terms include 'helmet', 'nob' (or 'knob'), and 'bell end', and all refer to its distinctive shape. The glans penis is anatomically homologous to the clitoral glans of the female. When the penis is flaccid it is wholly or partially covered by the foreskin, except in men who have been fully circumcised. The foreskin serves to protect this delicate mucous membrane covered structure. [WP,unvetted]." [Wikipedia:Glans_penis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "balanus" RELATED [BTO:0003118] xref: BTO:0003118 xref: EMAPA:18988 xref: EMAPA:29288 xref: EV:0100108 xref: FMA:18247 xref: GAID:0000012 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/35/Male_anatomy.png/200px-Male_anatomy.png xref: MA:0002726 xref: ncithesaurus:Glans_Penis xref: OG:0001475 xref: OpenCyc:Mx4rvdCpE5wpEbGdrcN5Y29ycA xref: SCTID:263378009 is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0000989 ! penis [Term] id: UBERON:0001300 name: scrotum alt_id: UBERON:FMA_18252-MA_0000409 def: "In some male mammals the scrotum (also referred to as the cod) is a protuberance of skin and muscle containing the testicles. It is an extension of the abdomen, and is located between the penis and anus. In humans and some other mammals, the base of the scrotum becomes covered with pubic hair at puberty. In common speech, the scrotum is often improperly referred to as the testicles, which actually refer to organs encased inside the scrotum. The scrotum is homologous to the labia majora in females. It becomes tight when sexually aroused. [WP,unvetted]." [Wikipedia:Scrotum] subset: uberon_slim xref: BTO:0003098 xref: EMAPA:19296 xref: FMA:18252 xref: GAID:393 xref: galen:Scrotum xref: http://upload.wikimedia.org/wikipedia/en/thumb/3/3e/HairedHumanScrotum.png/200px-HairedHumanScrotum.png xref: MA:0000409 xref: MESH:A.05.360.444.661 xref: ncithesaurus:Scrotum xref: OpenCyc:Mx4rwUC_upwpEbGdrcN5Y29ycA xref: SCTID:265794003 is_a: UBERON:0000475 ! organism subdivision is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0004053 ! external male genitalia [Term] id: UBERON:0001301 name: epididymis alt_id: UBERON:FMA_18255-MA_0000397-MIAA_0000130 def: "A narrow, tightly-coiled tube connecting the efferent ducts from the rear of each testicle to its vas deferens." [Wikipedia:Epididymis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "epididymus" EXACT [] xref: BTO:0000408 xref: EFO:0000982 xref: EMAPA:19290 xref: EV:0100103 xref: FMA:18255 xref: GAID:397 xref: galen:Epididymis xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Illu_testis_surface.jpg/200px-Illu_testis_surface.jpg xref: MA:0000397 xref: MAT:0000130 xref: MESH:A.05.360.444.849.286 xref: MIAA:0000130 xref: ncithesaurus:Epididymis xref: OG:0001265 xref: SCTID:181432000 is_a: UBERON:0000058 ! duct is_a: UBERON:0005904 ! implied link automatically realized ! duct of male reproductive system relationship: part_of UBERON:0000473 ! testis [Term] id: UBERON:0001302 name: right uterine tube alt_id: UBERON:FMA_18483-MA_0001717 def: "A fallopian tube that is part of a right side of organism [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "right fallopian tube" EXACT [] synonym: "right oviduct" EXACT [] xref: FMA:18483 xref: MA:0001717 xref: ncithesaurus:Right_Fallopian_Tube xref: SCTID:280106006 is_a: UBERON:0003889 ! implied link automatically realized ! fallopian tube relationship: part_of UBERON:0004532 intersection_of: UBERON:0003889 ! fallopian tube intersection_of: part_of UBERON:0004532 ! right side of organism [Term] id: UBERON:0001303 name: left uterine tube alt_id: UBERON:FMA_18484-MA_0001716 def: "A fallopian tube that is part of a left side of organism [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "left fallopian tube" EXACT [] synonym: "left oviduct" EXACT [] xref: FMA:18484 xref: MA:0001716 xref: ncithesaurus:Left_Fallopian_Tube xref: SCTID:280107002 is_a: UBERON:0003889 ! implied link automatically realized ! fallopian tube relationship: part_of UBERON:0004531 intersection_of: UBERON:0003889 ! fallopian tube intersection_of: part_of UBERON:0004531 ! left side of organism [Term] id: UBERON:0001304 name: germinal epithelium of ovary alt_id: UBERON:FMA_18629-MA_0001711 def: "layer of simple cuboidal cells covering surface of ovary[WP]." [http://en.wikipedia.org/wiki/Talk\:Germinal_epithelium_%28female%29, PMID:16923182, Wikipedia:Germinal_epithelium_(female)] comment: Controversial - see article. Requires expert input. Also check BTO placement synonym: "epithelium superficiale (ovarium)" EXACT [] synonym: "female coelomic epithelium" RELATED [EMAPA:17384] synonym: "germinal epithelium (female)" EXACT [Wikipedia:Germinal_epithelium_(female)] synonym: "ovarian surface epithelium" EXACT [BTO:0004483] synonym: "ovary germinal epithelium" EXACT [] xref: BTO:0004483 xref: EHDAA:8126 xref: EHDAA2:0001361 xref: EMAPA:27564 xref: FMA:18629 xref: MA:0001711 xref: ncithesaurus:Ovarian_Surface_Epithelium xref: OG:0000630 xref: SCTID:258308007 is_a: UBERON:0000484 ! implied link automatically realized ! simple cuboidal epithelium relationship: part_of UBERON:0001307 intersection_of: UBERON:0000484 ! simple cuboidal epithelium intersection_of: part_of UBERON:0001307 ! capsule of ovary [Term] id: UBERON:0001305 name: ovarian follicle alt_id: UBERON:FMA_18640-MA_0001707-ZFA_0001110 def: "Ovarian follicles are the basic units of female reproductive biology, each of which is composed of roughly spherical aggregations of cells found in the ovary. They contain a single oocyte (aka ovum or egg). These structures are periodically initiated to grow and develop, culminating in ovulation of usually a single competent oocyte in humans. These eggs/ova are only developed once every menstrual cycle (e.g. once a month in humans)[WP]." [Wikipedia:Ovarian_follicle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "egg follicle" RELATED [] synonym: "follicle of ovary" EXACT [] synonym: "follicle of ovary viewed macroscopically" EXACT [FMA:18640] synonym: "ovary follicle" EXACT [] xref: BTO:0000475 xref: FMA:18640 xref: GAID:371 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Primary_follicle-4.JPG/200px-Primary_follicle-4.JPG xref: MA:0001707 xref: MAT:0000449 xref: MESH:A.05.360.319.114.630.535 xref: ncithesaurus:Ovarian_Follicle xref: OG:0001536 xref: SCTID:361111009 xref: TAO:0001110 xref: ZFA:0001110 is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: develops_from UBERON:0005296 ! ovary sex cord relationship: part_of UBERON:0000992 ! female gonad [Term] id: UBERON:0001306 name: cumulus oophorus alt_id: UBERON:FMA_18659-MA_0002414 def: "At one part of the mature follicle, the cells of the membrana granulosa are collected into a mass which projects into the cavity of the follicle. This cluster of cells is termed the cumulus oophorus (Latin cumulus=heap, Greek oo=egg + phorus=carrying) discus proligerus, and it is released with the embedded oocyte during ovulation. In order for fertilization to occur this layer must be penetrated by the spermatocyte. [WP,unvetted]." [Wikipedia:Cumulus_oophorus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "cumulus ovaricus" EXACT [] xref: FMA:18659 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3a/Gray1164.png/200px-Gray1164.png xref: MA:0002414 xref: SCTID:258586009 is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0001305 ! ovarian follicle relationship: part_of UBERON:0005170 ! ovary stratum granulosum [Term] id: UBERON:0001307 name: capsule of ovary alt_id: UBERON:FMA_18662-MA_0001706 comment: This class was created automatically from a combination of ontologies synonym: "ovarian capsule" EXACT [] synonym: "ovary capsule" EXACT [] xref: FMA:18662 xref: MA:0001706 xref: ncithesaurus:Ovarian_Capsule xref: SCTID:258491008 is_a: UBERON:0003893 ! capsule relationship: surrounds UBERON:0000992 intersection_of: UBERON:0003893 ! capsule intersection_of: surrounds UBERON:0000992 ! female gonad relationship: surrounds UBERON:0000992 ! female gonad [Term] id: UBERON:0001308 name: external iliac artery alt_id: UBERON:FMA_18805-MA_0001973 def: "The external iliac artery is a large artery in the pelvic region that carries blood to the lower limb. The external iliac artery is a paired artery, meaning there is one on each side of the body: a right external iliac artery and left external iliac artery. The external iliac artery is accompanied by the external iliac vein, which is located posterior to the artery. [WP,unvetted]." [Wikipedia:External_iliac_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: BTO:0004666 xref: EHDAA:4337 xref: EHDAA2:0000463 xref: EMAPA:17614 xref: FMA:18805 xref: galen:ExternalIliacArtery xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3e/Gray539.png/200px-Gray539.png xref: MA:0001973 xref: ncithesaurus:External_Iliac_Artery xref: OpenCyc:Mx4rvkh47pwpEbGdrcN5Y29ycA xref: SCTID:181352000 is_a: UBERON:0004573 ! systemic artery relationship: part_of UBERON:0001191 ! common iliac artery [Term] id: UBERON:0001309 name: internal iliac artery alt_id: UBERON:FMA_18808-MA_0001974 def: "The internal iliac artery (formerly known as the hypogastric artery) is the main artery of the pelvis. [WP,unvetted]." [Wikipedia:Internal_iliac_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: BTO:0004667 xref: EMAPA:17860 xref: FMA:18808 xref: galen:InternalIliacArtery xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d3/Iliac_artery_bifurcation.PNG/200px-Iliac_artery_bifurcation.PNG xref: MA:0001974 xref: ncithesaurus:Internal_Iliac_Artery xref: SCTID:181346001 is_a: UBERON:0004573 ! systemic artery relationship: part_of UBERON:0001191 ! common iliac artery [Term] id: UBERON:0001310 name: umbilical artery alt_id: UBERON:FMA_18820-MA_0002072 def: "The umbilical artery is a paired artery (with one for each half of the body) that is found in the abdominal and pelvic regions. In the fetus, it extends into the umbilical cord. [WP,unvetted]." [Wikipedia:Umbilical_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: BTO:0000841 xref: EHDAA:1026 xref: EHDAA:410 xref: EHDAA2:0002106 xref: EMAPA:16331 xref: EMAPA:16372 xref: FMA:18820 xref: GAID:516 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/Gray502.png/200px-Gray502.png xref: MA:0002072 xref: MESH:A.07.231.114.929 xref: ncithesaurus:Umbilical_Artery xref: OpenCyc:Mx4rCWdhMGWbEd2AAABQjYGu0g xref: SCTID:261404000 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001311 name: inferior vesical artery alt_id: UBERON:FMA_18823-MA_0002079 def: "The INF vesical artery is an artery in the pelvis that supplies the lower part of the bladder. [WP,unvetted]." [Wikipedia:Inferior_vesical_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "arteria vesicali inferior" EXACT [] xref: FMA:18823 xref: MA:0002079 xref: ncithesaurus:Inferior_Vesical_Artery xref: SCTID:43210002 is_a: UBERON:0009027 ! vesical artery relationship: supplies UBERON:0000056 ! ureter relationship: supplies UBERON:0000998 ! seminal vesicle relationship: supplies UBERON:0001000 ! vas deferens relationship: supplies UBERON:0002367 ! prostate gland relationship: supplies UBERON:0006082 ! fundus of urinary bladder [Term] id: UBERON:0001312 name: superior vesical artery alt_id: UBERON:FMA_18839-MA_0002080 def: "The superior vesical artery supplies numerous branches to the upper part of the bladder. From one of these a slender vessel, the artery to the ductus deferens, takes origin and accompanies the duct in its course to the testis, where it anastomoses with the internal spermatic artery. Other branches supply the ureter. The first part of the superior vesical artery represents the terminal section of the previous portion of the umbilical artery. [WP,unvetted]." [Wikipedia:Superior_vesical_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "arteria vesicalis superior" EXACT [] xref: FMA:18839 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/20/Internal_iliac_branches.PNG/200px-Internal_iliac_branches.PNG xref: MA:0002080 xref: ncithesaurus:Superior_Vesical_Artery xref: SCTID:113268007 is_a: UBERON:0009027 ! vesical artery [Term] id: UBERON:0001313 name: iliolumbar artery alt_id: UBERON:FMA_18845-MA_0001976 def: "The iliolumbar artery is a branch of the posterior trunk of the internal iliac artery. [WP,unvetted]." [Wikipedia:Iliolumbar_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "ilio-lumbar artery" EXACT [] xref: FMA:18845 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bd/Gray585.png/200px-Gray585.png xref: MA:0001976 xref: ncithesaurus:Iliolumbar_Artery xref: SCTID:113267002 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001314 name: obturator artery alt_id: UBERON:FMA_18865-MA_0002008 def: "The obturator artery passes antero-inferiorly (forwards and downwards) on the lateral wall of the pelvis, to the upper part of the obturator foramen, and, escaping from the pelvic cavity through the obturator canal, it divides into both an anterior and a posterior branch. [WP,unvetted]." [Wikipedia:Obturator_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:18865 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6f/Gray547.png/200px-Gray547.png xref: MA:0002008 xref: ncithesaurus:Obturator_Artery xref: SCTID:244302006 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001315 name: superior gluteal artery alt_id: UBERON:FMA_18868-MA_0002054 def: "The superior gluteal artery (gluteal artery) is the largest branch of the internal iliac artery, and appears to be the continuation of the posterior division of that vessel. It is a short artery which runs backward between the lumbosacral trunk and the first sacral nerve, and, passing out of the pelvis above the upper border of the Piriformis, immediately divides into a superficial and a deep branch. Within the pelvis it gives off a few branches to the Iliacus, Piriformis, and Obturator internus, and just previous to quitting that cavity, a nutrient artery which enters the ilium. [WP,unvetted]." [Wikipedia:Superior_gluteal_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "arteria glutealis superior" EXACT [] xref: FMA:18868 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3a/Gray1244.png/200px-Gray1244.png xref: MA:0002054 xref: ncithesaurus:Gluteal_Artery xref: SCTID:181354004 is_a: UBERON:0001637 ! artery relationship: part_of UBERON:0001015 ! musculature [Term] id: UBERON:0001316 name: external iliac vein alt_id: UBERON:FMA_18883-MA_0002144 def: "The external iliac veins are large veins that connect the femoral veins to the common iliac veins. Their origin is at the inferior margin of the inguinal ligaments and they terminate when they join the internal iliac veins (to form the common iliac veins). Both external iliac veins are accompanied along their course by external iliac arteries. [WP,unvetted]." [Wikipedia:External_iliac_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: EHDAA2:0000464 xref: FMA:18883 xref: galen:ExternalIliacVein xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/65/Iliac_veins.gif/200px-Iliac_veins.gif xref: MA:0002144 xref: ncithesaurus:External_Iliac_Vein xref: OpenCyc:Mx4rwQUYtZwpEbGdrcN5Y29ycA xref: SCTID:181400000 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001317 name: internal iliac vein alt_id: UBERON:FMA_18884-MA_0002145 def: "The internal iliac vein (hypogastric vein) begins near the upper part of the greater sciatic foramen, passes upward behind and slightly medial to the hypogastric artery and, at the brim of the pelvis, joins with the external iliac to form the common iliac vein. [WP,unvetted]." [Wikipedia:Internal_iliac_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: EHDAA2:0000874 xref: FMA:18884 xref: galen:InternalIliacVein xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Internaliliacv.png/200px-Internaliliacv.png xref: MA:0002145 xref: ncithesaurus:Internal_Iliac_Vein xref: OG:0000749 xref: SCTID:181399007 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001318 name: inferior vesical vein alt_id: UBERON:FMA_18890-MA_0002264 comment: This class was created automatically from a combination of ontologies xref: FMA:18890 xref: MA:0002264 is_a: UBERON:0002460 ! vesical vein relationship: tributary_of UBERON:0001317 {source="FMA/obol"} ! internal iliac vein [Term] id: UBERON:0001319 name: vaginal vein alt_id: UBERON:FMA_18899-MA_0002251 def: "The vaginal plexuses are placed at the sides of the vagina; they communicate with the uterine, vesical, and hemorrhoidal plexuses, and are drained by the vaginal veins, one on either side, into the hypogastric veins. [WP,unvetted]." [Wikipedia:Vaginal_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "vagina vein" EXACT [OBOL:automatic] synonym: "vein of vagina" EXACT [OBOL:automatic] xref: FMA:18899 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d4/Gray589.png/200px-Gray589.png xref: MA:0002251 xref: SCTID:424336009 is_a: UBERON:0001344 ! implied link automatically realized ! epithelium of vagina is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0000996 intersection_of: UBERON:0001638 ! vein intersection_of: part_of UBERON:0000996 ! vagina relationship: tributary_of UBERON:0001317 {source="FMA/obol"} ! internal iliac vein [Term] id: UBERON:0001320 name: iliolumbar vein alt_id: UBERON:FMA_18902-MA_0002146 def: "The iliolumbar vein is the vena comitans of the iliolumbar artery. The obturator nerve crosses superficial to it. A single vein is found more commonly than a double vein. It drains vertebral segments four and five. It is closely related to the ascending lumbar vein. [WP,unvetted]." [Wikipedia:Iliolumbar_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "ilio-lumbar vein" EXACT [] xref: FMA:18902 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bd/Gray585.png/200px-Gray585.png xref: MA:0002146 xref: ncithesaurus:Iliolumbar_Vein xref: SCTID:286793006 is_a: UBERON:0001638 ! vein relationship: tributary_of UBERON:0001317 {source="FMA/obol"} ! internal iliac vein [Term] id: UBERON:0001321 name: obturator vein alt_id: UBERON:FMA_18914-MA_0002183 def: "The obturator vein begins in the upper portion of the adductor region of the thigh and enters the pelvis through the upper part of the obturator foramen, in the obturator canal. It runs backward and upward on the lateral wall of the pelvis below the obturator artery, and then passes between the ureter and the hypogastric artery, to end in the hypogastric vein. It has an anterior and posterior branch (similar to obturator artery). [WP,unvetted]." [Wikipedia:Obturator_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:18914 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bd/Gray585.png/200px-Gray585.png xref: MA:0002183 xref: ncithesaurus:Obturator_Vein xref: SCTID:20146009 is_a: UBERON:0001638 ! vein relationship: tributary_of UBERON:0001317 {source="FMA/obol"} ! internal iliac vein [Term] id: UBERON:0001322 name: sciatic nerve alt_id: UBERON:FMA_19034-MA_0001172 def: "The sciatic nerve (also known as the ischiatic nerve) is a large nerve in humans and other animals. It begins in the lower back and runs through the buttock and down the lower limb. It is the longest and widest single nerve in the human body. The sciatic supplies nearly the whole of the skin of the leg, the muscles of the back of the thigh, and those of the leg and foot. It is derived from spinal nerves L4 through S3. It contains fibres from both the anterior and posterior divisions of the lumbosacral plexus. [WP,unvetted]." [Wikipedia:Sciatic_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "nervus ischiadicus" RELATED [BTO:0001221] synonym: "nervus sciaticus" RELATED [BTO:0001221] xref: BTO:0001221 xref: EFO:0001417 xref: EHDAA:5659 xref: EHDAA2:0001779 xref: EMAPA:18577 xref: FMA:19034 xref: GAID:852 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3a/Gray1244.png/200px-Gray1244.png xref: MA:0001172 xref: MESH:A.08.800.800.720.450.760 xref: ncithesaurus:Sciatic_Nerve xref: NIF_GrossAnatomy:birnlex_1133 xref: OG:0000894 xref: OpenCyc:Mx4rv7MlDJwpEbGdrcN5Y29ycA xref: SCTID:181050003 is_a: UBERON:0002003 ! peripheral nerve is_a: UBERON:0003431 ! implied link automatically realized ! leg nerve relationship: part_of UBERON:0000978 ! leg relationship: part_of UBERON:0001815 ! lumbosacral nerve plexus [Term] id: UBERON:0001323 name: tibial nerve alt_id: UBERON:FMA_19035-MA_0001173 def: "The tibial nerve is a branch of the sciatic nerve. The tibial nerve passes through the popliteal fossa to pass below the arch of soleus. In the popliteal fossa the nerve gives off branches to gastrocnemius, popliteus, soleus and plantaris muscles, an articular branch to the knee joint, and a cutaneous branch that will become the sural nerve. The sural nerve is joined by fibres from the common peroneal nerve and runs down the calf to supply the lateral side of the foot. Below the soleus muscle the nerve lies close to the tibia and supplies the tibialis posterior, the flexor digitorum longus and the flexor hallucis longus. The nerve passes into the foot running posterior to the medial malleolus. Here it is bound down by the flexor retinaculum in company with the posterior tibial artery. [WP,unvetted]." [Wikipedia:Tibial_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "medial popliteal nerve" EXACT [] xref: FMA:19035 xref: GAID:854 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1a/Gray828.png/200px-Gray828.png xref: MA:0001173 xref: MESH:A.08.800.800.720.450.760.820 xref: ncithesaurus:Tibial_Nerve xref: OpenCyc:Mx4rwNya8JwpEbGdrcN5Y29ycA xref: SCTID:181078002 is_a: UBERON:0002003 ! peripheral nerve is_a: UBERON:0003431 ! implied link automatically realized ! leg nerve relationship: part_of UBERON:0000978 ! leg [Term] id: UBERON:0001324 name: common fibular nerve alt_id: UBERON:FMA_19039-MA_0001169 def: "a nerve arising at the terminal division of the sciatic nerve at the popliteal fossa and extending to the neck of the fibula, ultimately innervating the Peroneus muscle[MP]. The common peroneal nerve (common fibular nerve; external popliteal nerve; peroneal nerve), about one-half the size of the tibial nerve, is derived from the dorsal branches of the fourth and fifth lumbar and the first and second sacral nerves. It descends obliquely along the lateral side of the popliteal fossa to the head of the fibula, close to the medial margin of the biceps femoris muscle. It lies between the tendon of the biceps femoris and lateral head of the gastrocnemius muscle, winds around the neck of the fibula, between the peronæus longus and the bone, and divides beneath the muscle into the superficial peroneal nerve (superficial fibular nerve) and deep peroneal nerve (deep fibular nerve). [WP,unvetted]." [MP:0011211, Wikipedia:Common_fibular_nerve] subset: uberon_slim synonym: "common peroneal nerve" EXACT [] synonym: "extrernal peroneal nerve" EXACT [MP:0011211] synonym: "lateral popliteal nerve" EXACT [MP:0011211] synonym: "nervus peroneus communis" EXACT [FMA:19039, FMA:TA] synonym: "peroneal nerve" EXACT [] xref: EFO:0003062 xref: FMA:19039 xref: GAID:853 xref: MA:0001169 xref: MESH:A.08.800.800.720.450.760.640 xref: ncithesaurus:Peroneal_Nerve xref: OpenCyc:Mx4rvwKexZwpEbGdrcN5Y29ycA xref: SCTID:181077007 is_a: UBERON:0002003 ! peripheral nerve is_a: UBERON:0003431 ! implied link automatically realized ! leg nerve relationship: part_of UBERON:0000978 ! leg [Term] id: UBERON:0001325 name: muscle of pelvis alt_id: UBERON:FMA_19086-MA_0000534 def: "Muscle (organ) which is a part of the pelvis. Examples: levator ani," [FMA:19086] subset: uberon_slim synonym: "muscle organ of pelvis" EXACT [OBOL:automatic] synonym: "pelvic muscle" EXACT [FMA:19086] synonym: "pelvis muscle" EXACT [] synonym: "pelvis muscle organ" EXACT [OBOL:automatic] xref: FMA:19086 xref: MA:0000534 is_a: UBERON:0003833 {source="MA"} ! abdominal segment muscle is_a: UBERON:0005179 ! implied link automatically realized ! pelvis organ relationship: part_of UBERON:0002355 intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0002355 {source="FMAdef"} ! pelvis [Term] id: UBERON:0001326 name: levator ani alt_id: UBERON:FMA_19087-MA_0002332 def: "The Levator ani is a broad, thin muscle, situated on the side of the pelvis. It is attached to the inner surface of the side of the lesser pelvis, and unites with its fellow of the opposite side to form the greater part of the floor of the pelvic cavity. It supports the viscera in pelvic cavity, and surrounds the various structures which pass through it. In combination with the Coccygeus muscle, it forms the pelvic diaphragm. [WP,unvetted]." [Wikipedia:Levator_ani] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: EMAPA:19165 xref: FMA:19087 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/63/Gray404.png/200px-Gray404.png xref: MA:0002332 xref: ncithesaurus:Levator_Ani is_a: UBERON:0001325 ! muscle of pelvis [Term] id: UBERON:0001327 name: coccygeus alt_id: UBERON:FMA_19088-MA_0002277 def: "The Coccygeus is a muscle of the pelvic wall (i.e. peripheral to the pelvic floor), situated behind the levator ani and in front of the sacrospinous ligament. It is a triangular plane of muscular and tendinous fibers, arising by its apex from the spine of the ischium and sacrospinous ligament, and inserted by its base into the margin of the coccyx and into the side of the lowest piece of the sacrum. It assists the Levator ani and Piriformis in closing in the back part of the outlet of the pelvis. [WP,unvetted]." [Wikipedia:Coccygeus] comment: This class was created automatically from a combination of ontologies subset: organ_slim subset: uberon_slim synonym: "ischiococcygeus" EXACT [] synonym: "musculus ischiococcygeus" EXACT [FMA:19088, FMA:TA] xref: FMA:19088 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/63/Gray404.png/200px-Gray404.png xref: MA:0002277 is_a: UBERON:0001325 ! muscle of pelvis [Term] id: UBERON:0001328 name: lobe of prostate alt_id: UBERON:FMA_19570-MA_0001738 comment: Anatomically, the human prostate gland is located between the base of the bladder and the rectum, and it completely surrounds the proximal urethra (Fig. 1A). It is a single alobular structure with central (CZ), peripheral (PZ) and transitional (TZ) zones. In contrast, the mouse prostate is not merged into one compact anatomical structure. It comprises four paired lobes situated circumferentially around the urethra, immediately caudal to the urinary bladder—namely, anterior (AP), dorsal (DP), lateral (LP), and ventral (VP) prostate (Fig. 1B). Often, the dorsal and the lateral lobes are thought of in combination and referred to as the dorsolateral (DLP) lobe as they share a ductal system. The mouse AP is considered analogous to the human CZ, which is rarely a site of neoplastic transformation in humans. The mouse DLP is considered most similar to the human PZ, which is the zone in which most carcinomas arise (Xue et al. 1997). These analogies, however, are limited as they are based solely on descriptive data and need to be re-evaluated using molecular techniques before the relationship between specific mouse prostate lobes and the human prostate zones is definitively asserted (Abate-Shen & Shen 2000). The mouse VP does not have a human homologue, and the human TZ does not have a murine homologue [PMID:15163300] synonym: "lobe of prostate gland" EXACT [] synonym: "prostate gland lobe" EXACT [] synonym: "prostatic lobe" EXACT [] xref: BTO:0000548 xref: FMA:19570 xref: MA:0001738 xref: ncithesaurus:Prostate_Gland_Lobe xref: SCTID:279692004 is_a: UBERON:0000064 ! organ part is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0002367 ! prostate gland [Term] id: UBERON:0001329 name: prostate gland anterior lobe alt_id: UBERON:FMA_19574-MA_0002422 def: "the prostate lobe that appears as a thin tubular structure, attached to the lesser curvature of the paired seminal vesicles." [MP:0001163] comment: comment: todo - check - see comments from PMID:15163300 synonym: "anterior lobe of prostate" EXACT [FMA:19574] synonym: "anterior lobe of prostate gland" EXACT [] synonym: "commissura prostatae" EXACT [FMA:19574, FMA:TA] synonym: "commissure of prostate" EXACT [] synonym: "isthmus of prostate" EXACT [] synonym: "isthmus of prostate gland" EXACT [] synonym: "isthmus prostatae" EXACT [FMA:19574, FMA:TA] synonym: "prostate gland anterior lobe" EXACT [] synonym: "prostatic isthmus" EXACT [] xref: BTO:0003158 xref: FMA:19574 xref: MA:0002422 xref: SCTID:279693009 is_a: UBERON:0001328 ! lobe of prostate [Term] id: UBERON:0001330 name: pampiniform plexus alt_id: UBERON:FMA_19607-MA_0001866 def: "The pampiniform plexus is a network of many small veins found in the human male spermatic cord. It is formed by the union of multiple spermatic veins from the back of the testis and tributaries from the epididymis. The veins of the plexus ascend along the cord in front of the ductus deferens. Below the subcutaneous inguinal ring they unite to form three or four veins, which pass along the inguinal canal, and, entering the abdomen through the abdominal inguinal ring, coalesce to form two veins. These again unite to form a single vein, the testicular vein, which opens on the right side into the inferior vena cava, at an acute angle, and on the left side into the left renal vein, at a right angle. The pampinoform plexus forms the chief mass of the cord. In addition to its function in venous return from the testes, the pampiniform plexus also plays a role in the temperature regulation of the testes. It acts as a heat exchanger, cooling blood in adjacent arteries. An abnormal enlargement of the pampiniform plexus is a medical condition called varicocele. [WP,unvetted]." [Wikipedia:Pampiniform_plexus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "pampiniform venous plexus" EXACT [] synonym: "plexus of veins of fascia of prostate" EXACT [] synonym: "plexus venosus pampiniformis" EXACT [FMA:19607, FMA:TA] synonym: "venous plexus of fascia of prostate" EXACT [] synonym: "venous plexus of fascia of prostate gland" EXACT [] xref: FMA:19607 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/af/Gray1147.png/200px-Gray1147.png xref: MA:0001866 xref: SCTID:279661001 is_a: UBERON:0001593 ! venous plexus [Term] id: UBERON:0001331 name: skin of penis alt_id: UBERON:FMA_19638-MA_0002727 def: "A zone of skin that is part of a penis [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "penile skin" EXACT [] synonym: "penis skin" EXACT [] synonym: "penis zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of penis" EXACT [OBOL:automatic] xref: FMA:19638 xref: MA:0002727 xref: SCTID:35900000 is_a: UBERON:0000014 ! implied link automatically realized ! zone of skin is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0000989 intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0000989 ! penis relationship: continuous_with UBERON:0001085 ! skin of trunk [Term] id: UBERON:0001332 name: prepuce of penis alt_id: UBERON:FMA_19639-MA_0000407 def: "In male human anatomy, the foreskin is a retractable double-layered fold of skin and mucous membrane that covers the glans penis and protects the urinary meatus when the penis is not erect. It is also described as the prepuce, a technically broader term that also includes the clitoral hood in women, to which the foreskin is embryonically homologous. [WP,unvetted]." [Wikipedia:Foreskin] comment: Note FMA also has FMA:27648 skin of prepuce of penis - how is this different? MA uses the term prepuce for the male prepuce. MA also has penis foreskin subset: uberon_slim synonym: "foreskin" EXACT [FMA:19639] synonym: "penile prepuce" EXACT [FMA:19639] synonym: "prepuce" BROAD [MA:0000407, Wikipedia:Foreskin] synonym: "prepuce of male" EXACT [EMAPA:18989] synonym: "preputial skin" RELATED [FMA:27648] synonym: "preputium" BROAD [HP:0100587] synonym: "skin of prepuce of penis" NARROW [FMA:27648] xref: BTO:0001113 xref: EFO:0001664 xref: EMAPA:18989 xref: EV:0100109 xref: FMA:19639 xref: http://upload.wikimedia.org/wikipedia/en/thumb/c/cc/Foreskin2.jpg/200px-Foreskin2.jpg xref: MA:0000407 xref: MA:0001744 xref: ncithesaurus:Prepuce xref: OpenCyc:Mx4rvVjlTZwpEbGdrcN5Y29ycA is_a: UBERON:0000014 ! zone of skin is_a: UBERON:0001331 ! implied link automatically realized ! skin of penis relationship: develops_from UBERON:0004876 {source="Wikipedia"} ! urogenital ridge relationship: part_of UBERON:0001331 ! skin of penis [Term] id: UBERON:0001333 name: male urethra alt_id: UBERON:FMA_19668-MA_0002640 def: "In anatomy, the urethra (from Greek οὐρήθρα - ourethra) is a tube which connects the urinary bladder to the outside of the body. The urethra has an excretory function in both sexes to pass urine to the outside, and also a reproductive function in the male, as a passage for semen. The external urethral sphincter is a striated muscle that allows voluntary control over urination. [WP,unvetted]." [Wikipedia:Male_urethra] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: BTO:0004089 xref: EMAPA:18692 xref: FMA:19668 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Female_anatomy.png/200px-Female_anatomy.png xref: MA:0002640 xref: ncithesaurus:Male_Urethra xref: SCTID:264085007 is_a: UBERON:0000057 ! implied link automatically realized ! urethra relationship: part_of UBERON:0003101 intersection_of: UBERON:0000057 ! urethra intersection_of: part_of UBERON:0003101 ! male organism [Term] id: UBERON:0001334 name: female urethra alt_id: UBERON:FMA_19669-MA_0002637 def: "In anatomy, the urethra (from Greek οὐρήθρα - ourethra) is a tube which connects the urinary bladder to the outside of the body. The urethra has an excretory function in both sexes to pass urine to the outside, and also a reproductive function in the male, as a passage for semen. The external urethral sphincter is a striated muscle that allows voluntary control over urination. [WP,unvetted]." [Wikipedia:Female_urethra] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: BTO:0004088 xref: EMAPA:28747 xref: FMA:19669 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Female_anatomy.png/200px-Female_anatomy.png xref: MA:0002637 xref: ncithesaurus:Female_Urethra xref: SCTID:264469008 is_a: UBERON:0000057 ! implied link automatically realized ! urethra relationship: part_of UBERON:0003100 intersection_of: UBERON:0000057 ! urethra intersection_of: part_of UBERON:0003100 ! female organism [Term] id: UBERON:0001335 name: prostatic urethra alt_id: UBERON:FMA_19673-MA_0002646 def: "The prostatic urethra, the widest and most dilatable part of the urethra canal, is about 3 cm. long. It runs almost vertically through the prostate from its base to its apex, lying nearer its anterior than its posterior surface; the form of the canal is spindle-shaped, being wider in the middle than at either extremity, and narrowest below, where it joins the membranous portion. A transverse section of the canal as it lies in the prostate is horse-shoe-shaped, with the convexity directed forward. [WP,unvetted]." [Wikipedia:Prostatic_urethra] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "pars prostatica urethrae" RELATED [BTO:0003163] synonym: "prostatic part of urethra" EXACT [] xref: BTO:0003163 xref: EMAPA:30942 xref: FMA:19673 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d7/Gray1142.png/200px-Gray1142.png xref: MA:0002646 xref: ncithesaurus:Prostatic_Portion_of_the_Male_Urethra xref: SCTID:279434009 is_a: UBERON:0000063 ! organ segment is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0001333 ! male urethra [Term] id: UBERON:0001336 name: membranous urethra alt_id: UBERON:FMA_19674-MA_0002647 def: "The intermediate part of male urethra (membranous portion) is the shortest, least dilatable, and, with the exception of the external orifice, the narrowest part of the canal. It extends downward and forward, with a slight anterior concavity, between the apex of the prostate and the bulb of the urethra, perforating the urogenital diaphragm about 2.5 cm. below and behind the pubic symphysis. The hinder part of the urethral bulb lies in apposition with the inferior fascia of the urogenital diaphragm, but its upper portion diverges somewhat from this fascia: the anterior wall of the membranous urethra is thus prolonged for a short distance in front of the urogenital diaphragm; it measures about 2 cm. in length, while the posterior wall which is between the two fasciæ of the diaphragm is only 1.25 cm. long. The membranous portion of the urethra is completely surrounded by the fibers of the Sphincter urethrae membranaceae. In front of it the deep dorsal vein of the penis enters the pelvis between the transverse ligament of the pelvis and the arcuate pubic ligament; on either side near its termination are the bulbourethral glands. [WP,unvetted]." [Wikipedia:Membranous_urethra] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "intermediate part of urethra" EXACT [] synonym: "intermediate urethra" EXACT [] synonym: "membranous part of urethra" EXACT [] synonym: "pars intermedia urethrae" EXACT [FMA:19674, FMA:TA] synonym: "pars membranacea (urethrae)" EXACT [] xref: FMA:19674 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d7/Gray1142.png/200px-Gray1142.png xref: MA:0002647 xref: ncithesaurus:Membranous_Urethra xref: SCTID:263343009 is_a: UBERON:0000063 ! organ segment is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0001008 ! excretory system relationship: part_of UBERON:0001333 ! male urethra [Term] id: UBERON:0001337 name: spongiose part of urethra alt_id: UBERON:FMA_19675-MA_0002643 def: "The spongy urethra (cavernous portion of urethra, penile urethra) is the longest part of the male urethra, and is contained in the corpus spongiosum urethraeæ. It is about 15 cm long, and extends from the termination of the membranous portion to the external urethral orifice. Commencing below the inferior fascia of the urogenital diaphragm it passes forward and upward to the front of the symphysis pubis; and then, in the flaccid condition of the penis, it bends downward and forward. It is narrow, and of uniform size in the body of the penis, measuring about 6 mm in diameter; it is dilated behind, within the bulb, and again anteriorly within the glans penis, where it forms the fossa navicularis urethrae. [WP,unvetted]." [Wikipedia:Penile_urethra] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "pars spongiosa" EXACT [FMA:19675, FMA:TA] synonym: "penile urethra" EXACT [] synonym: "spongiose urethra" EXACT [] synonym: "spongy urethra (male)" EXACT [] xref: BTO:0004089 xref: EMAPA:30944 xref: FMA:19675 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d7/Gray1142.png/200px-Gray1142.png xref: MA:0002643 is_a: UBERON:0000063 ! organ segment is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0001333 ! male urethra [Term] id: UBERON:0001338 name: urethral gland alt_id: UBERON:FMA_19683-MA_0001688 def: "The term urethral or periurethral gland (also Littre gland after Alexis Littré, or preputial glands) is used to refer to any of the many glands that branch off the wall of the urethra of male mammals. The glands secrete mucus, which is incorporated into the semen, and are most numerous in the section of the urethra that runs through the penis. [WP,unvetted]." [Wikipedia:Urethral_gland] comment: This class was created automatically from a combination of ontologies subset: organ_slim subset: uberon_slim synonym: "gland of urethra" EXACT [OBOL:automatic] synonym: "urethra gland" EXACT [] xref: FMA:19683 xref: MA:0001688 xref: SCTID:279477005 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002365 ! implied link automatically realized ! exocrine gland is_a: UBERON:0002530 ! gland is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0000057 intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0000057 ! urethra relationship: part_of UBERON:0002330 ! exocrine system [Term] id: UBERON:0001339 name: ischiocavernosus alt_id: UBERON:FMA_19730-MA_0002330 def: "The ischiocavernosus muscle is a muscle just below the surface of the perineum, present in both men and women. [WP,unvetted]." [Wikipedia:Ischiocavernosus] comment: todo - add part_of relationships subset: organ_slim subset: uberon_slim xref: FMA:19730 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c0/Ischiocavernosus-female.png/200px-Ischiocavernosus-female.png xref: MA:0002330 xref: ncithesaurus:Ischiocavernosus is_a: UBERON:0002379 ! perineal muscle [Term] id: UBERON:0001340 name: dorsal artery of penis alt_id: UBERON:FMA_19795-MA_0001946 def: "The Dorsal Artery of the Penis ascends between the crus penis and the pubic symphysis, and, piercing the inferior fascia of the urogenital diaphragm, passes between the two layers of the suspensory ligament of the penis, and runs forward on the dorsum of the penis to the glans, where it divides into two branches, which supply the glans and prepuce. On the penis, it lies between the dorsal nerve and deep dorsal vein, the former being on its lateral side. It supplies the integument and fibrous sheath of the corpus cavernosum penis, sending branches through the sheath to anastomose with the deep artery of the penis. [WP,unvetted]." [Wikipedia:Dorsal_artery_of_penis] subset: uberon_slim synonym: "arteria dorsalis penis" EXACT [BTO:0005088] synonym: "dorsal artery of the penis" RELATED [BTO:0005088] synonym: "dorsal penile artery" EXACT [FMA:19795] synonym: "dorsal penis artery" EXACT [MA:0001946] xref: BTO:0005088 xref: FMA:19795 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f6/Gray1155.png/200px-Gray1155.png xref: MA:0001946 xref: SCTID:244294001 is_a: UBERON:0001637 {source="MA"} ! artery is_a: UBERON:0004803 ! implied link automatically realized ! penis epithelium relationship: branch_of UBERON:0007315 {source="FMA"} ! internal pudendal artery relationship: part_of UBERON:0000989 {source="FMA"} ! penis relationship: part_of UBERON:0008320 {source="BTO"} ! common penile artery [Term] id: UBERON:0001341 name: lesser sac alt_id: UBERON:FMA_19800-MA_0000445 def: "The lesser sac, also known as the omental bursa, is the cavity in the abdomen that is formed by the lesser and greater omentum. Usually found in mammals, it is connected with the greater sac via the epiploic foramen (also known as the Foramen of Winslow). In mammals, it is not uncommon for the lesser sac to contain considerable amounts of fat. In human anatomy, the wall of the stomach, pancreas and splenic artery are a part of the wall of the lesser sac. If these structures rupture they may leak into the lesser sac. For the stomach, which lies anterior to the omental bursa, the rupture must be on the posterior side; if it were anteriorly located, the leak would collect in the greater sac. The lesser sac is embryologically formed from an infolding of the greater omentum. The open end of the infolding, known as the epiploic foramen, is usually proximal to the stomach. [WP,unvetted]." [Wikipedia:Lesser_sac] comment: Note - check EHDAA2 subset: uberon_slim synonym: "bursa omentalis" EXACT [FMA:19800, FMA:TA] synonym: "omental bursa" EXACT [] xref: EHDAA:2335 xref: EHDAA2:0001296 xref: EHDAA2:0004554 xref: EMAPA:16889 xref: EMAPA:18458 xref: FMA:19800 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c5/Peritoneum.svg/200px-Peritoneum.svg.png xref: MA:0000445 xref: ncithesaurus:Omental_Bursa xref: OG:0000458 is_a: UBERON:0000063 ! organ segment is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001179 ! peritoneal cavity [Term] id: UBERON:0001342 name: mesovarium alt_id: UBERON:FMA_19815-ZFA_0000333 def: "The mesovarium is the portion of the broad ligament of the uterus that covers the ovaries. At first the mesonephros and genital ridge are suspended by a common mesentery, but as the embryo grows the genital ridge gradually becomes pinched off from the mesonephros, with which it is at first continuous, though it still remains connected to the remnant of this body by a fold of peritoneum. In the male this is the mesorchium, and in the female, this is the mesovarium. [WP,unvetted]." [Wikipedia:Mesovarium] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core xref: AAO:0010531 xref: EMAPA:17961 xref: FMA:19815 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e7/Gray1111.png/200px-Gray1111.png xref: SCTID:279914000 xref: TAO:0000333 xref: ZFA:0000333 is_a: UBERON:0002095 ! mesentery is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0000992 ! female gonad relationship: part_of UBERON:0002095 ! mesentery [Term] id: UBERON:0001343 name: seminiferous tubule of testis alt_id: UBERON:FMA_19825-XAO_0003088 def: "Seminiferous tubules are located in the testicles, and are the specific location of meiosis, and the subsequent creation of gametes, namely spermatozoa. The epithelium of the tubule consists of sustentacular or Sertoli cells, which are tall, columnar type cells that line the tubule. In between the Sertoli cells are spermatogenic cells, which differentiate through meiosis to sperm cells. There are two types: convoluted and straight. convuluted towards the lateral side and straight as the tubule comes medially to form ducts which will exit the testis. [WP,unvetted]." [Wikipedia:Seminiferous_tubule] subset: uberon_slim synonym: "seminiferous cord" EXACT [EMAPA:18685] synonym: "seminiferous tubule" EXACT [] synonym: "testis - seminiferous tubule" EXACT [] xref: AAO:0010399 xref: BTO:0001235 xref: EFO:0001404 xref: EMAPA:18685 xref: EMAPA:31476 xref: EV:0100380 xref: FMA:19825 xref: GAID:400 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6a/Gray1145.png/200px-Gray1145.png xref: MA:0000412 xref: MAT:0000503 xref: MESH:A.05.360.444.849.700 xref: ncithesaurus:Seminiferous_Cord xref: ncithesaurus:Seminiferous_Tubule xref: OG:0001363 xref: SCTID:279614002 xref: XAO:0003088 is_a: UBERON:0000058 ! duct is_a: UBERON:0005904 ! implied link automatically realized ! duct of male reproductive system relationship: part_of UBERON:0000473 ! testis [Term] id: UBERON:0001344 name: epithelium of vagina alt_id: UBERON:FMA_19978-MA_0001730 def: "the epithelial layer of the vagina." [MP:0001140] comment: FMA: nonkeratinizing stratified squamous epithelium; BTO: Vaginal epithelium is stratified squamous epithelium having a thickness of 15-200 microns; MA has single subclass (squamous) synonym: "epithelial tissue of vagina" EXACT [OBOL:automatic] synonym: "epithelium, vaginal" RELATED [BTO:0000422] synonym: "vagina epithelial tissue" EXACT [OBOL:automatic] synonym: "vagina epithelium" EXACT [] synonym: "vaginal epithelium" EXACT [] xref: BTO:0000422 xref: EMAPA:30991 xref: FMA:19978 xref: MA:0001730 xref: ncithesaurus:Vaginal_Epithelium is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000486 ! multilaminar epithelium is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure is_a: UBERON:0005911 ! implied link automatically realized ! endo-epithelium relationship: part_of UBERON:0000996 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000996 ! vagina relationship: part_of UBERON:0000996 ! vagina [Term] id: UBERON:0001345 name: fornix alt_id: UBERON:FMA_19985-MA_0002747 def: "This class was obsoleted." [Wikipedia:Fornix] comment: This class was created automatically from a combination of ontologies subset: uberon_slim is_obsolete: true consider: UBERON:0000051 consider: UBERON:0000052 [Term] id: UBERON:0001346 name: hymen of vagina alt_id: UBERON:FMA_20005-MA_0002465 comment: This class was created automatically from a combination of ontologies synonym: "hymen vaginae" EXACT [] synonym: "vaginal hymen" EXACT [] xref: FMA:20005 xref: MA:0002465 xref: MESH:A.05.360.319.779.479 is_a: UBERON:0000063 ! organ segment is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0000996 ! vagina [Term] id: UBERON:0001347 name: white adipose tissue alt_id: UBERON:FMA_20117-MA_0000058-MIAA_0000199 def: "Adipose tissue, cells of which contain a single large lipid droplet.[FMA]" [FMA:FMA, Wikipedia:White_adipose_tissue] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "adipocytus unigutturalis" EXACT [] synonym: "textus adiposus albus" EXACT [] synonym: "unilocular adipose tissue" EXACT [] synonym: "white fat" EXACT [] xref: BTO:0001456 xref: EFO:0000813 xref: FMA:20117 xref: MA:0000058 xref: MAT:0000199 xref: MIAA:0000199 xref: ncithesaurus:White_Adipose_Tissue is_a: UBERON:0001013 ! adipose tissue [Term] id: UBERON:0001348 name: brown adipose tissue alt_id: UBERON:FMA_20118-MA_0000057-MIAA_0000198 def: "Adipose tissue, cells of which contain multiple small lipid droplets.[FMA]" [FMA:FMA, Wikipedia:Brown_adipose_tissue] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "adipocytus multigutturalis" EXACT [] synonym: "brown fat" EXACT [] synonym: "multilocular adipose tissue" EXACT [] synonym: "textus adiposus fuscus" EXACT [] xref: BTO:0000156 xref: EFO:0000812 xref: EMAPA:19209 xref: FMA:20118 xref: GAID:921 xref: MA:0000057 xref: MAT:0000198 xref: MESH:A.10.165.114.322 xref: MIAA:0000198 xref: ncithesaurus:Brown_Adipose_Tissue xref: SCTID:15965003 is_a: UBERON:0001013 ! adipose tissue [Term] id: UBERON:0001349 name: vestibule alt_id: UBERON:FMA_20192-XAO_0000199 def: "Anatomical cavity that connects an organ cavity, organ cavity subdivision or cavity of body part subdivision to the exterior, completely or partially surrounded by organs or organ parts that are lined by epithelium. Examples: preputial cavity, vestibule of vagina.[FMA]" [FMA:20192, FMA:FMA, Wikipedia:Vestibule_(disambiguation)#Anatomy] subset: uberon_slim xref: AAO:0000984 xref: EV:0100366 xref: FMA:20192 is_a: UBERON:0002553 ! anatomical cavity [Term] id: UBERON:0001350 name: coccyx alt_id: UBERON:FMA_20229-MA_0000696 def: "In humans: The coccyx, commonly referred to as the tailbone, is the final segment of the human vertebral column. Comprising three to five separate or fused vertebrae (the coccygeal vertebrae) below the sacrum, it is attached to the sacrum by a fibrocartilaginous joint, the sacrococcygeal symphysis, which permits limited movement between the sacrum and the coccyx. The term coccyx comes originally from the Greek language and means 'cuckoo', referring to the curved shape of a cuckoo's beak when viewed from the side. [WP,unvetted]." [Wikipedia:Coccyx] comment: In MA the subclass hierarchy is cocc V is_a caud V is_a tail bone subset: organ_slim subset: uberon_slim synonym: "coccygeal vertebrae I-IV" EXACT [FMA:20229] synonym: "coccyx [coccygeal vertebrae i-iv]" EXACT [FMA:20229] synonym: "coccyx [vertebrae coccygeae i-iv]" EXACT [FMA:20229, FMA:TA] synonym: "os coccygis" EXACT [FMA:20229, FMA:TA] synonym: "tailbone" RELATED SENSU [FMA:20229] xref: AAO:0000731 xref: FMA:20229 xref: GAID:239 xref: galen:Coccyx xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/91/Gray100.png/200px-Gray100.png xref: MESH:A.02.835.232.834.229 xref: ncithesaurus:Coccyx xref: OpenCyc:Mx4rv1XqHJwpEbGdrcN5Y29ycA xref: SCTID:182028002 is_a: UBERON:0004247 ! implied link automatically realized ! back bone is_a: UBERON:0008001 {source="FMA"} ! irregular bone relationship: has_fused_element UBERON:0006070 ! coccygeal vertebra relationship: part_of UBERON:0001130 ! vertebral column [Term] id: UBERON:0001351 name: lacrimal sac alt_id: UBERON:FMA_20289-MA_0001298 def: "The lacrimal sac is the upper dilated end of the nasolacrimal duct, and is lodged in a deep groove formed by the lacrimal bone and frontal process of the maxilla. It connects the lacrimal canaliculi, which drain tears from the eye's surface, and the nasolacrimal duct, which conveys this fluid into the nasal cavity. This is mainly for high amounts of tears, in which the lacrimal sac pumps inward and outward driven by the orbicularis muscle during blinking. It is oval in form and measures from 12 to 15 mm. in length; its upper end is closed and rounded; its lower is continued into the nasolacrimal duct. Its superficial surface is covered by a fibrous expansion derived from the medial palpebral ligament, and its deep surface is crossed by the lacrimal part of the Orbicularis oculi, which is attached to the crest on the lacrimal bone. Like the nasolacrimal duct, the sac is lined by stratified columnar epithelium with mucus-secreting goblet cells, with surrounding connective tissue. [WP,unvetted]." [Wikipedia:Lacrimal_sac] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:20289 xref: MA:0001298 xref: ncithesaurus:Lacrimal_Sac xref: SCTID:362534009 is_a: UBERON:0000063 ! organ segment relationship: part_of UBERON:0001850 ! lacrimal duct [Term] id: UBERON:0001352 name: external acoustic meatus alt_id: UBERON:FMA_20290-MA_0000260 def: "A tube running from the outer ear to the middle ear. The human ear canal extends from the pinna to the eardrum and is about 26 mm in length and 7 mm in diameter." [Wikipedia:External_acoustic_meatus] comment: Editor note: consider revisiting superclass after refinement of CARO/EAO, conduit may not be quite correct subset: uberon_slim synonym: "auditory canal" EXACT [] synonym: "auditory meatus" RELATED [EHDAA2:0000460] synonym: "ear canal" EXACT [Wikipedia:Ear_canal] synonym: "external acoustic tube" EXACT [FMA:61734] synonym: "external auditory canal" EXACT [] synonym: "external auditory meatus" RELATED [] synonym: "external auditory tube" EXACT [FMA:61734] xref: EHDAA:8975 xref: EHDAA2:0000460 xref: EMAPA:17588 xref: EV:0100356 xref: FMA:61734 xref: GAID:864 xref: galen:ExternalAuditoryMeatus xref: MA:0000260 xref: MESH:A.09.246.272.396 xref: ncithesaurus:External_Acoustic_Meatus xref: OG:0000977 xref: OpenCyc:Mx4rvli-nZwpEbGdrcN5Y29ycA xref: SCTID:181178004 is_a: UBERON:0004111 ! anatomical conduit relationship: develops_from UBERON:0005872 ! 1st arch branchial groove relationship: part_of UBERON:0001691 {source="FMA"} ! external ear [Term] id: UBERON:0001353 name: anal region alt_id: UBERON:FMA_20347-MA_0000329 subset: uberon_slim xref: EFO:0000847 xref: EHDAA:2931 xref: EHDAA2:0000122 xref: EMAPA:16831 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fb/Gray408.png/200px-Gray408.png xref: MA:0000329 xref: MAT:0000042 xref: MIAA:0000042 xref: ncithesaurus:Anal_Region xref: OG:0000395 xref: SCTID:362680001 xref: WBbt:0006919 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004921 ! subdivision of digestive tract relationship: part_of UBERON:0006866 ! terminal part of digestive tract [Term] id: UBERON:0001354 name: inferior epigastric artery alt_id: UBERON:FMA_20686-MA_0001978 def: "In human anatomy, inferior epigastric artery refers to the artery that arises from the external iliac artery and anastomoses with the superior epigastric artery. Along its course, it is accompanied by a similarly named vein, the inferior epigastric vein. [WP,unvetted]." [Wikipedia:Inferior_epigastric_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: EMAPA:18751 xref: FMA:20686 xref: MA:0001978 xref: ncithesaurus:Inferior_Epigastric_Artery xref: OpenCyc:Mx4rdBvQc6gOEdudWQACs5b6Bw xref: SCTID:244288009 is_a: UBERON:0001637 ! artery relationship: part_of UBERON:0001308 ! external iliac artery [Term] id: UBERON:0001355 name: deep femoral artery alt_id: UBERON:FMA_20741-MA_0002027 def: "The profunda femoris artery (also known as the deep femoral artery, or the deep artery of the thigh) is a branch of the femoral artery that, as its name suggests, travels more deeply (posteriorly) than the rest of the femoral artery. [WP,unvetted]." [Wikipedia:Deep_femoral_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "arteria profunda femoris" EXACT [] synonym: "profunda femoris artery" EXACT [] xref: FMA:20741 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Gray548.png/200px-Gray548.png xref: MA:0002027 xref: ncithesaurus:Deep_Femoral_Artery xref: SCTID:181348000 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001356 name: medial circumflex femoral artery alt_id: UBERON:FMA_20799-MA_0001996 def: "The medial circumflex femoral artery (internal circumflex artery, medial femoral circumflex artery) is an artery in the upper thigh that helps supply blood to the neck of the femur. [WP,unvetted]." [Wikipedia:Medial_circumflex_femoral_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "medial femoral circumflex artery" EXACT [] xref: FMA:20799 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c5/Circumflex_femoral_arteries.png/200px-Circumflex_femoral_arteries.png xref: MA:0001996 xref: SCTID:244326008 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001357 name: inferior rectal artery alt_id: UBERON:FMA_20824-MA_0001979 def: "The inferior rectal artery (inferior hemorrhoidal artery) is an artery that supplies blood to the lower half of the anal canal. [WP,unvetted]." [Wikipedia:Inferior_rectal_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "inferior hemorrhoidal artery" EXACT [] xref: FMA:20824 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6d/Gray542.png/200px-Gray542.png xref: MA:0001979 xref: ncithesaurus:Inferior_Rectal_Artery xref: SCTID:244304007 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001358 name: perineal artery alt_id: UBERON:FMA_20836-MA_0002017 def: "The perineal artery (superficial perineal artery) arises from the internal pudendal artery, and turns upward, crossing either over or under the Transversus perinæi superficialis, and runs forward, parallel to the pubic arch, in the interspace between the Bulbocavernosus and Ischiocavernosus, both of which it supplies, and finally divides into several posterior scrotal branches which are distributed to the skin and dartos tunic of the scrotum. As it crosses the Transversus perinæi superficialis it gives off the transverse perineal artery which runs transversely on the cutaneous surface of the muscle, and anastomoses with the corresponding vessel of the opposite side and with the perineal and inferior hemorrhoidal arteries. It supplies the Transversus perinæi superficialis and the structures between the anus and the urethral bulb. [WP,unvetted]." [Wikipedia:Perineal_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:20836 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6d/Gray542.png/200px-Gray542.png xref: MA:0002017 xref: ncithesaurus:Perineal_Artery xref: SCTID:244303001 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001359 name: cerebrospinal fluid alt_id: UBERON:FMA_20935-MA_0002503 def: "Transudate contained in the subarachnoid space.[FMA]" [FMA:FMA, Wikipedia:Cerebrospinal_fluid] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "cerebral spinal fluid" EXACT [ZFA:0001626] synonym: "CSF" EXACT [] synonym: "spinal fluid" RELATED [BTO:0000237] xref: BTO:0000237 xref: BTO:0001280 xref: EFO:0000329 xref: ENVO:02000029 xref: EV:0100311 xref: FMA:20935 xref: GAID:1181 xref: MA:0002503 xref: MAT:0000499 xref: MESH:A.12.207.268 xref: ncithesaurus:Cerebrospinal_Fluid xref: NIF_GrossAnatomy:birnlex_1798 xref: OG:0001278 xref: ZFA:0001626 is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0001360 name: deep circumflex iliac vein alt_id: UBERON:FMA_21182-MA_0002099 def: "The deep circumflex iliac vein is formed by the union of the venæ comitantes of the deep iliac circumflex artery, and joins the external iliac vein about 2 cm. above the inguinal ligament. It also receives small tributary branches from the thoracoepigastric vein [WP,unvetted]." [Wikipedia:Deep_circumflex_iliac_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "deep iliac circumflex vein" EXACT [] synonym: "vena circumflexa iliaca profunda" EXACT [] xref: FMA:21182 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bd/Gray585.png/200px-Gray585.png xref: MA:0002099 xref: SCTID:11653007 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001361 name: femoral vein alt_id: UBERON:FMA_21185-MA_0002118 def: "In the human body, the femoral vein is a blood vessel that accompanies the femoral artery in the femoral sheath. It begins at the adductor canal (also known as Hunter's canal) and is a continuation of the popliteal vein. It ends at the inferior margin of the inguinal ligament, where it becomes the external iliac vein. [WP,unvetted]." [Wikipedia:Femoral_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: AAO:0010237 xref: EMAPA:17876 xref: FMA:21185 xref: GAID:533 xref: galen:FemoralVein xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/34/Femoral_triangle.gif/200px-Femoral_triangle.gif xref: MA:0002118 xref: MESH:A.07.231.908.314 xref: ncithesaurus:Femoral_Vein xref: OpenCyc:Mx4rwFXTLJwpEbGdrcN5Y29ycA xref: SCTID:362071002 is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0000475 ! organism subdivision [Term] id: UBERON:0001362 name: perineal vein alt_id: UBERON:FMA_21246-MA_0002193 comment: This class was created automatically from a combination of ontologies xref: FMA:21246 xref: MA:0002193 xref: SCTID:312507009 is_a: UBERON:0001638 ! vein relationship: tributary_of UBERON:0001317 {source="FMA/obol"} ! internal iliac vein [Term] id: UBERON:0001363 name: great saphenous vein alt_id: UBERON:FMA_21376-MA_0002216 def: "The great saphenous vein (GSV), also greater saphenous vein, is the large (subcutaneous) superficial vein of the leg and thigh. The terms 'safaina' (Greek) and 'el safin' (Arabic) have both been claimed as the origin for the word 'saphenous'. [WP,unvetted]." [Wikipedia:Great_saphenous_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "greater saphenous vein" EXACT [] synonym: "large saphenous vein" RELATED [BTO:0003271] synonym: "long saphenous vein" EXACT [] xref: BTO:0003271 xref: FMA:21376 xref: galen:GreaterSaphenousVein xref: galen:GreatSaphenousVein xref: MA:0002216 xref: ncithesaurus:Long_Saphenous_Vein xref: SCTID:181402008 is_a: UBERON:0007318 ! saphenous vein relationship: tributary_of UBERON:0001361 {source="FMA/obol"} ! femoral vein [Term] id: UBERON:0001364 name: circumpennate alt_id: UBERON:FMA_21431-ZFA_0000271 subset: vertebrate_core synonym: "radial" EXACT [] synonym: "radialis" EXACT [FMA:21431, FMA:TA] synonym: "radials" RELATED [] xref: FMA:21431 xref: OpenCyc:Mx4rvVjBSZwpEbGdrcN5Y29ycA xref: TAO:0000271 xref: ZFA:0000271 is_obsolete: true [Term] id: UBERON:0001365 name: sacro-iliac joint alt_id: UBERON:FMA_21440-MA_0001506 def: "." [Wikipedia:Sacro-iliac_joint] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "articulatio sacro-iliaca" EXACT [] synonym: "sacroiliac joint" EXACT [] xref: EMAPA:19300 xref: FMA:21440 xref: GAID:268 xref: MA:0001506 xref: MESH:A.02.835.583.707 xref: ncithesaurus:Sacroiliac_Joint xref: SCTID:182199004 is_a: UBERON:0002217 ! synovial joint [Term] id: UBERON:0001366 name: parietal peritoneum alt_id: UBERON:0004459 alt_id: UBERON:FMA_21451-ZFA_0005131 def: "The peritoneum that lines the walls of the peritoneal cavity." [Wikipedia:Parietal_peritoneum, ZFIN:curator] comment: fix coordinated with ZFA subset: uberon_slim subset: vertebrate_core synonym: "peritoneal cavity lining" EXACT [MA:0000449] xref: AAO:0010816 xref: FMA:21451 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5f/Gray1040.png/200px-Gray1040.png xref: MA:0000449 xref: OG:0001527 xref: SCTID:362700006 xref: TAO:0005131 xref: ZFA:0005131 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0002358 ! peritoneum relationship: surrounds UBERON:0001179 ! peritoneal cavity [Term] id: UBERON:0001367 name: external anal sphincter alt_id: UBERON:FMA_21930-MA_0001531 def: "The Sphincter ani externus (external anal sphincter) is a flat plane of muscular fibers, elliptical in shape and intimately adherent to the integument surrounding the margin of the anus. [WP,unvetted]." [Wikipedia:External_anal_sphincter] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "external sphincter ani" EXACT [] synonym: "sphincter ani externus" RELATED [] xref: EMAPA:18265 xref: FMA:21930 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/75/Anorectum.gif/200px-Anorectum.gif xref: MA:0001531 xref: ncithesaurus:External_Anal_Sphincter is_a: UBERON:0004590 ! sphincter muscle is_a: UBERON:0004916 ! implied link automatically realized ! anal sphincter relationship: part_of UBERON:0001353 ! anal region [Term] id: UBERON:0001368 name: obturator externus alt_id: UBERON:FMA_22299-MA_0002347 def: "The obturator externus muscle is a flat, triangular muscle, which covers the outer surface of the anterior wall of the pelvis. It is sometimes considered part of the medial compartment of thigh, and sometimes considered part of the gluteal region. [WP,unvetted]." [Wikipedia:Obturator_externus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "external obturator" EXACT [] xref: FMA:22299 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/55/Posterior_Hip_Muscles_1.PNG/200px-Posterior_Hip_Muscles_1.PNG xref: MA:0002347 xref: SCTID:245026009 is_a: UBERON:0002000 ! gluteal muscle [Term] id: UBERON:0001369 name: iliacus alt_id: UBERON:FMA_22310-MA_0002318 def: "The iliacus is a flat, triangular muscle, which fills the iliac fossa. [WP,unvetted]." [Wikipedia:Iliacus_muscle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "anterior muscle of pelvic girdle" EXACT [] synonym: "iliacus muscle" RELATED [Wikipedia:Iliacus_muscle] xref: EMAPA:19164 xref: FMA:22310 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e2/Anterior_Hip_Muscles_2.PNG/200px-Anterior_Hip_Muscles_2.PNG xref: MA:0002318 xref: ncithesaurus:Iliacus is_a: UBERON:0001497 {source="FMA"} ! muscle of pelvic girdle [Term] id: UBERON:0001370 name: gluteus maximus alt_id: UBERON:FMA_22314-MA_0002309 def: "The gluteus maximus (or glutæus maximus) is the largest and most superficial of the three gluteal muscles. It makes up a large portion of the shape and appearance of the buttocks. It is a broad and thick fleshy mass of a quadrilateral shape, and forms the prominence of the nates. Its large size is one of the most characteristic features of the muscular system in humans, connected as it is with the power of maintaining the trunk in the erect posture. The muscle is remarkably coarse in structure, being made up of fasciculi lying parallel with one another and collected together into large bundles separated by fibrous septa. [WP,unvetted]." [Wikipedia:Gluteus_maximus_muscle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "glutaeus maximus muscle" RELATED [Wikipedia:Gluteus_maximus_muscle] synonym: "gluteus maximus muscle" RELATED [Wikipedia:Gluteus_maximus_muscle] synonym: "gluteus superficialis" RELATED [] synonym: "m.gluteus maximus" EXACT [] xref: EMAPA:18527 xref: FMA:22314 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/70/Posterior_Hip_Muscles_3.PNG/200px-Posterior_Hip_Muscles_3.PNG xref: MA:0002309 xref: ncithesaurus:Gluteus_Maximus xref: OpenCyc:Mx4rvVjdMZwpEbGdrcN5Y29ycA is_a: UBERON:0002000 ! gluteal muscle relationship: part_of UBERON:0004470 {source="FMA"} ! musculature of pelvic girdle [Term] id: UBERON:0001371 name: gluteus medius alt_id: UBERON:FMA_22315-MA_0002310 def: "The gluteus medius (or glutæus medius), one of the three gluteal muscles, is a broad, thick, radiating muscle, situated on the outer surface of the pelvis. Its posterior third is covered by the gluteus maximus, its anterior two-thirds by the gluteal aponeurosis, which separates it from the superficial fascia and integument. [WP,unvetted]." [Wikipedia:Gluteus_medius] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "gluteus medius muscle" RELATED [Wikipedia:Gluteus_medius_muscle] synonym: "musculus gluteus medius" RELATED [Wikipedia:Gluteus_medius_muscle] xref: EMAPA:19163 xref: FMA:22315 xref: galen:GluteusMedius xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/70/Posterior_Hip_Muscles_3.PNG/200px-Posterior_Hip_Muscles_3.PNG xref: MA:0002310 xref: ncithesaurus:Gluteus_Medius is_a: UBERON:0002000 ! gluteal muscle relationship: attached_to UBERON:0002503 {source="FMA"} ! greater trochanter relationship: part_of UBERON:0004470 {source="FMA"} ! musculature of pelvic girdle [Term] id: UBERON:0001372 name: psoas minor alt_id: UBERON:FMA_22350-MA_0002359 def: "The psoas minor is a long, slender skeletal muscle that, when present, is placed in front of the psoas major muscle. It is absent in 40% of individuals. [WP,unvetted]." [Wikipedia:Psoas_minor] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "psoas minor muscle" EXACT [] xref: BTO:0001878 xref: EMAPA:18170 xref: FMA:22350 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b2/Gray430.png/200px-Gray430.png xref: MA:0002359 xref: ncithesaurus:Psoas_Minor xref: SCTID:244954007 is_a: UBERON:0008450 {source="MA"} ! psoas [Term] id: UBERON:0001373 name: sartorius alt_id: UBERON:FMA_22353-MA_0002368 def: "." [Wikipedia:Sartorius] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: BTO:0001215 xref: EHDAA:10583 xref: EHDAA2:0001776 xref: FMA:22353 xref: galen:Sartorius xref: MA:0002368 xref: OG:0001192 is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0001374 name: biceps femoris alt_id: UBERON:FMA_22356-MA_0002270 def: "The biceps femoris is a muscle of the posterior (the back) thigh. As its name implies, it has two parts, one of which (the long head) forms part of the hamstrings muscle group. [WP,unvetted]." [Wikipedia:Biceps_femoris_muscle] subset: uberon_slim synonym: "biceps femoris muscle" EXACT [BTO:0003418] xref: BTO:0003418 xref: EFO:0001418 xref: FMA:22356 xref: galen:BicepsFemoris xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bc/Biceps_femoris_muscle_long_head.PNG/200px-Biceps_femoris_muscle_long_head.PNG xref: MA:0002270 xref: ncithesaurus:Biceps_Femoris xref: SCTID:181672002 is_a: UBERON:0001630 {source="MA"} ! muscle organ is_a: UBERON:0004252 ! implied link automatically realized ! hindlimb stylopod muscle relationship: part_of UBERON:0000376 ! hindlimb stylopod [Term] id: UBERON:0001375 name: semitendinosus alt_id: UBERON:FMA_22357-MA_0002375 def: "The semitendinosus is a muscle in the back of the thigh; it is one of the hamstrings. [WP,unvetted]." [Wikipedia:Semitendinosus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "musculus semitendinosus" RELATED [BTO:0001236] synonym: "semitendinosus muscle" EXACT [] xref: BTO:0001236 xref: FMA:22357 xref: galen:Semitendinosus xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3f/Semitendinosus_muscle.PNG/200px-Semitendinosus_muscle.PNG xref: MA:0002375 xref: ncithesaurus:Semitendinosus xref: SCTID:181685004 is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0003663 ! implied link automatically realized ! hindlimb muscle relationship: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0001376 name: tensor fasciae latae alt_id: UBERON:FMA_22423-MA_0002391 def: "The tensor fasciae latae or tensor fasciæ latæ is a muscle of the thigh. [WP,unvetted]." [Wikipedia:Tensor_fasciae_latae] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "musculus tensor fasciae latae" EXACT [FMA:22423, FMA:TA] synonym: "tensor fasciae lata" EXACT [] synonym: "tensor of fascia lata" EXACT [] xref: FMA:22423 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e2/Anterior_Hip_Muscles_2.PNG/200px-Anterior_Hip_Muscles_2.PNG xref: MA:0002391 xref: ncithesaurus:Tensor_Fasciae_Lata xref: SCTID:181671009 is_a: UBERON:0002000 ! gluteal muscle [Term] id: UBERON:0001377 name: quadriceps femoris alt_id: UBERON:FMA_22428-MA_0002363 def: "The quadriceps femoris, also called simply the quadriceps, quadriceps extensor, quads, is a large muscle group that includes the four prevailing muscles on the front of the thigh. It is the great extensor muscle of the knee, forming a large fleshy mass which covers the front and sides of the femur. It is the strongest and leanest muscle in the human body. It is subdivided into four separate portions or 'heads', which have received distinctive names: Rectus femoris occupies the middle of the thigh, covering most of the other three quadriceps muscles. It originates on the ilium. It is named from its straight course. The other three lie deep to rectus femoris and originate from the body of the femur, which they cover from the trochanters to the condyles: Vastus lateralis is on the lateral side of the femur (i.e. on the outer side of the thigh). Vastus medialis is on the medial side of the femur (i.e. on the inner part thigh). Vastus intermedius lies between vastus lateralis and vastus medialis on the front of the femur (i.e. on the top or front of the thigh). All four parts of the quadriceps muscle attach to the patella (knee cap) via the quadriceps tendon. The quadriceps is also involved in Lombard's Paradox. The proper plural form of the adjective quadriceps is quadricipes, a form not in general use; instead, quadriceps is used in both singular and plural (i.e. , when referring to both legs). The form quadricep [sic], though common even in professional contexts, is incorrect. The error may derive from a mistaken belief that quadriceps is a plural noun (rather than an adjective in the singular), since English typically forms its plurals with the addition of the letter s to the end of a word stem. [WP,unvetted]." [Wikipedia:Quadriceps_femoris] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "musculus quadriceps femoris" RELATED [BTO:0001149] synonym: "quadricep muscle" RELATED [BTO:0001149] synonym: "quadriceps" EXACT [] synonym: "quadriceps muscle" RELATED [BTO:0001149] synonym: "quadriceps muscle of the thigh" RELATED [BTO:0001149] synonym: "quadriceps muscle of thigh" RELATED [BTO:0001149] xref: BTO:0001149 xref: EFO:0001938 xref: EHDAA:8299 xref: EHDAA2:0001583 xref: EMAPA:19073 xref: EMAPA:19146 xref: FMA:22428 xref: galen:QuadricepsFemoris xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/57/Illu_lower_extremity_muscles.jpg/200px-Illu_lower_extremity_muscles.jpg xref: MA:0002363 xref: ncithesaurus:Quadriceps_Muscle_of_the_Thigh xref: OG:0000828 xref: OpenCyc:Mx4rvVjd-JwpEbGdrcN5Y29ycA is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0003663 ! implied link automatically realized ! hindlimb muscle relationship: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0001378 name: rectus femoris alt_id: UBERON:FMA_22430-MA_0002365 def: "The Rectus femoris muscle is one of the four quadriceps muscles of the human body. (The others are the vastus medialis, the vastus intermedius, and the vastus lateralis. All four combine to form the quadriceps tendon, which inserts into the patella and continues as the patellar ligament. ) The Rectus femoris is situated in the middle of the front of the thigh; it is fusiform in shape, and its superficial fibers are arranged in a bipenniform manner, the deep fibers running straight down to the deep aponeurosis. [WP,unvetted]." [Wikipedia:Rectus_femoris] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "musculus rectos femoris" EXACT [] xref: BTO:0001564 xref: FMA:22430 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/14/Rectus_femoris.png/200px-Rectus_femoris.png xref: MA:0002365 xref: ncithesaurus:Rectus_Femoris xref: SCTID:181679006 is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0003663 ! implied link automatically realized ! hindlimb muscle relationship: part_of UBERON:0001377 ! quadriceps femoris [Term] id: UBERON:0001379 name: vastus lateralis alt_id: UBERON:FMA_22431-MA_0002402 def: "The Vastus lateralis (Vastus externus) is the largest part of the Quadriceps femoris. It arises by a broad aponeurosis, which is attached to the upper part of the intertrochanteric line, to the anterior and inferior borders of the greater trochanter, to the lateral lip of the gluteal tuberosity, and to the upper half of the lateral lip of the linea aspera; this aponeurosis covers the upper three-fourths of the muscle, and from its deep surface many fibers take origin. A few additional fibers arise from the tendon of the Glutæus maximus, and from the lateral intermuscular septum between the Vastus lateralis and short head of the Biceps femoris. The fibers form a large fleshy mass, which is attached to a strong aponeurosis, placed on the deep surface of the lower part of the muscle: this aponeurosis becomes contracted and thickened into a flat tendon inserted into the lateral border of the patella, blending with the Quadriceps femoris tendon, and giving an expansion to the capsule of the knee-joint. [WP,unvetted]." [Wikipedia:Vastus_lateralis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "lateralis" BROAD [] synonym: "vastus externus" RELATED [BTO:0001563] xref: BTO:0001563 xref: EFO:0001937 xref: FMA:22431 xref: galen:VastusLateralis xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/57/Illu_lower_extremity_muscles.jpg/200px-Illu_lower_extremity_muscles.jpg xref: MA:0002402 xref: ncithesaurus:Vastus_Lateralis is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0003663 ! implied link automatically realized ! hindlimb muscle relationship: part_of UBERON:0001377 ! quadriceps femoris [Term] id: UBERON:0001380 name: vastus medialis alt_id: UBERON:FMA_22432-MA_0002403 def: "The vastus medialis, often called the 'teardrop' muscle, is a medially located muscle of the quadriceps. [WP,unvetted]." [Wikipedia:Vastus_medialis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "medialis" BROAD [] xref: BTO:0004913 xref: FMA:22432 xref: galen:VastusMedialis xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/38/Vastus_medialis.png/200px-Vastus_medialis.png xref: MA:0002403 is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0003663 ! implied link automatically realized ! hindlimb muscle relationship: part_of UBERON:0001377 ! quadriceps femoris [Term] id: UBERON:0001381 name: semimembranosus alt_id: UBERON:FMA_22438-MA_0002371 def: "The semimembranosus is a muscle in the back of the thigh. It is the most medial of the three hamstring muscles. [WP,unvetted]." [Wikipedia:Semimembranosus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "musculus semimembranosus" RELATED [BTO:0003177] xref: BTO:0003177 xref: FMA:22438 xref: galen:Semimembranosus xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bf/Semimembranosus_muscle.PNG/200px-Semimembranosus_muscle.PNG xref: MA:0002371 xref: ncithesaurus:Semimembranosus is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0003663 ! implied link automatically realized ! hindlimb muscle relationship: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0001382 name: pectineus alt_id: UBERON:FMA_22440-MA_0002353 def: "The pectineus muscle is a flat, quadrangular muscle, situated at the anterior part of the upper and medial aspect of the thigh. It can be classified in the medial compartment of thigh (when the function is emphasized) or the anterior compartment of thigh (when the nerve is emphasized). [WP,unvetted]." [Wikipedia:Pectineus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:22440 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e2/Anterior_Hip_Muscles_2.PNG/200px-Anterior_Hip_Muscles_2.PNG xref: MA:0002353 xref: ncithesaurus:Pectineus is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0003663 ! implied link automatically realized ! hindlimb muscle relationship: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0001383 name: muscle of leg alt_id: UBERON:FMA_22471-MA_0000672 def: "." [Wikipedia:Leg_muscle] comment: see notes on UBERON:0000978 for possible confusion over the term 'leg' subset: uberon_slim synonym: "leg muscle" EXACT [] synonym: "leg muscle organ" EXACT [OBOL:automatic] synonym: "muscle of upper/lower leg" EXACT [] synonym: "muscle organ of leg" EXACT [OBOL:automatic] xref: BTO:0000722 xref: MA:0000672 is_a: UBERON:0003663 ! implied link automatically realized ! hindlimb muscle relationship: part_of UBERON:0000978 intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0000978 ! leg [Term] id: UBERON:0001384 name: primary motor cortex alt_id: UBERON:FMA_224854-MA_0000907 def: "a brain region that in humans is located in the posterior portion of the frontal lobe. It works in association with pre-motor areas to plan and execute movements. M1 contains large neurons known as Betz cells which send long axons down the spinal cord to synapse onto alpha motor neurons which connect to the muscles. Pre-motor areas are involved in planning actions (in concert with the basal ganglia) and refining movements based upon sensory input (this requires the cerebellum). The human primary motor cortex is located in the dorsal part of the precentral gyrus and the anterior bank of the central sulcus. The precentral gyrus is in front of the postcentral gyrus from which it is separated by the central sulcus. Its anterior border is the precentral sulcus, while inferiorly it borders to the lateral fissure (Sylvian fissure). Medially, it is contiguous with the paracentral lobule." [Wikipedia:Primary_motor_cortex] comment: TODO: in MA this is asserted to be part_of BOTH frontal and parietal cortex. in ABA these are disjoint. FMA makes no commitment beyond cerebral cortex. Wikipedia says frontal lobe. Check if species difference or difference in definition. Removed relationship: part_of UBERON:0001872 {source="MA-modified"} subset: uberon_slim synonym: "motor cortex" EXACT [FMA:224854] synonym: "prefrontal gyrus" RELATED [Wikipedia:Primary_motor_cortex] xref: BM:Tel-Cx-M1 xref: BTO:0004348 xref: EFO:0002472 xref: FMA:224854 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/eb/Ba4.png/200px-Ba4.png xref: MA:0000907 xref: MESH:A.08.186.211.730.885.213.270.548 xref: SCTID:11931008 is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0001870 {source="MA", source="Wikipedia"} ! frontal cortex relationship: part_of UBERON:0001950 ! neocortex [Term] id: UBERON:0001385 name: tibialis anterior alt_id: UBERON:FMA_22532-MA_0002395 def: "In human anatomy, the tibialis anterior is a muscle that originates in the upper two-thirds of the lateral surface of the tibia and inserts into the medial cuneiform and first metatarsal bones of the foot. Its acts to invert the foot. It is situated on the lateral side of the tibia; it is thick and fleshy above, tendinous below. This muscle overlaps the anterior tibial vessels and deep peroneal nerve in the upper part of the leg. [WP,unvetted]. The M. tibialis cranialis is a muscle that flexes the tarsometatarsus. It originates on the craniodistal aspect of the femur and proximal tibiotarsus and inserts on the cranial surface of the tarsometarsus[EvoWiki]." [http://evolutionwiki.org/wiki/M._tibialis_cranialis, Wikipedia:Tibialis_anterior] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "anterior tibialis" RELATED [BTO:0001382] synonym: "ibialis anticus" RELATED [BTO:0001382] synonym: "tibialis anterior muscle" RELATED [BTO:0001382] synonym: "tibialis cranialis" EXACT [MA:0002395] synonym: "tibilais cranialis" EXACT [] xref: BTO:0001382 xref: EFO:0001385 xref: FMA:22532 xref: galen:TibialisAnterior xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9c/Gray1240.png/200px-Gray1240.png xref: MA:0002395 xref: ncithesaurus:Tibialis_Cranialis xref: SCTID:181696007 is_a: UBERON:0008230 ! tibialis [Term] id: UBERON:0001386 name: extensor digitorum longus alt_id: UBERON:FMA_22534-MA_0002295 def: "The Extensor digitorum longus is a pennate muscle, situated at the lateral part of the front of the leg. [WP,unvetted]." [Wikipedia:Extensor_digitorum_longus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "extensor digitorum longus muscle" RELATED [BTO:0000436] xref: BTO:0000436 xref: FMA:22534 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5f/Gray1241.png/200px-Gray1241.png xref: MA:0002295 xref: ncithesaurus:Extensor_Digitorum_Longus is_a: UBERON:0000311 {source="BTO"} ! extensor muscle is_a: UBERON:0001383 ! implied link automatically realized ! muscle of leg relationship: part_of UBERON:0000978 ! leg [Term] id: UBERON:0001387 name: fibularis longus alt_id: UBERON:FMA_22539-MA_0002356 def: "In human anatomy, the peroneus longus (also known as fibularis longus) is a superficial muscle in the lateral compartment of the leg, and acts to evert and plantar flex the ankle. It is situated at the upper part of the lateral side of the leg, and is the most superficial of the three peroneus muscles. It is innervated by the superficial fibular nerve (superficial peroneal nerve). [WP,unvetted]." [Wikipedia:Fibularis_longus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "musculus peroneus longus" EXACT [FMA:22539, FMA:TA] synonym: "peroneus longus" EXACT [] synonym: "peroneus longus muscle" EXACT [] xref: FMA:22539 xref: galen:PeroneusLongus xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9c/Gray1240.png/200px-Gray1240.png xref: MA:0002356 xref: ncithesaurus:Peroneus_Longus xref: SCTID:361825008 is_a: UBERON:0009132 ! peroneus [Term] id: UBERON:0001388 name: gastrocnemius alt_id: UBERON:FMA_22541-MA_0002306 def: "In humans, the gastrocnemius muscle is a very powerful superficial muscle that is in the back part of the lower leg and also called the calf. It runs from its two heads just above the knee to the heel, and is involved in standing, walking, running and jumping. Along with the soleus muscle it forms the calf muscle. [WP,unvetted]." [Wikipedia:Gastrocnemius] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "gastrocnemius muscle" EXACT [BTO:0000506] synonym: "m.gastrocnemius" EXACT [] synonym: "musculus gastrocnemius" RELATED [Wikipedia:Gastrocnemius_muscle] xref: BTO:0000506 xref: EFO:0001413 xref: EHDAA:8293 xref: EHDAA2:0000701 xref: FMA:22541 xref: galen:Gastrocnemius xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8e/Gastrocnemius.png/200px-Gastrocnemius.png xref: MA:0002306 xref: ncithesaurus:Gastrocnemius_Muscle xref: OG:0001193 xref: SCTID:181700004 is_a: UBERON:0001383 ! muscle of leg is_a: UBERON:0004256 ! implied link automatically realized ! hindlimb zeugopod muscle relationship: part_of UBERON:0001665 {source="FMA"} ! triceps surae relationship: part_of UBERON:0003823 ! hindlimb zeugopod [Term] id: UBERON:0001389 name: soleus alt_id: UBERON:FMA_22542-MA_0002424 def: "a powerful muscle in the back part of the lower leg (the calf). It runs from just below the knee to the heel, and is involved in standing and walking. It is closely connected to the gastrocnemius muscle and some anatomists consider them to be a single muscle, the triceps surae. Its name is derived from the solefish whose shape it resembles. The soleus is located in the superficial posterior compartment of the leg. Not all mammals have a soleus muscle; one familiar species that lacks the soleus is the dog." [Wikipedia:Soleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "soleus muscle" RELATED [BTO:0001265] xref: BTO:0001265 xref: EFO:0001946 xref: FMA:22542 xref: galen:Soleus xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/57/Illu_lower_extremity_muscles.jpg/200px-Illu_lower_extremity_muscles.jpg xref: MA:0002424 xref: ncithesaurus:Soleus xref: SCTID:181702007 is_a: UBERON:0001383 ! muscle of leg is_a: UBERON:0004256 ! implied link automatically realized ! hindlimb zeugopod muscle relationship: part_of UBERON:0001665 ! triceps surae [Term] id: UBERON:0001390 name: sural artery alt_id: UBERON:FMA_22570-MA_0002058 def: "The sural arteries (inferior muscular arteries) are two large branches, which are distributed to the Gastrocnemius, Soleus, and Plantaris. The term applies to any of four or five arteries arising from the popliteal artery, with distribution to the muscles and integument of the calf, and with anastomoses to the posterior tibial, medial and lateral inferior genicular arteries. [WP,unvetted]." [Wikipedia:Sural_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:22570 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/60/Gray551.png/200px-Gray551.png xref: MA:0002058 xref: ncithesaurus:External_Sural_Artery xref: SCTID:302693002 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001391 name: popliteus alt_id: UBERON:FMA_22590-MA_0002554 def: "The popliteus muscle in the leg is used to unlock the knee by laterally rotating the femur on the tibia during a closed chain movement (such as one with the foot in contact with the ground). [WP,unvetted]." [Wikipedia:Popliteus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "m.popliteus" EXACT [] synonym: "popliteal muscle" EXACT [] xref: FMA:22590 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c1/Gray439.png/200px-Gray439.png xref: MA:0002554 is_a: UBERON:0001383 ! muscle of leg [Term] id: UBERON:0001392 name: flexor hallucis longus alt_id: UBERON:FMA_22593-MA_0002301 def: "The Flexor hallucis longus muscle (FHL) is a muscle of the leg. It is one of the deep muscles of the posterior compartment of the leg. The other deep muscles of the leg are flexor digitorum longus and tibialis posterior. FHL is the largest and most powerful of these deep muscles. The Flexor hallucis longus is situated on the fibular side of the leg. It arises from the inferior two-thirds of the posterior surface of the body of the fibula, with the exception of 2.5 cm. at its lowest part; from the lower part of the interosseous membrane; from an intermuscular septum between it and the Peronæi, laterally, and from the fascia covering the Tibialis posterior, medially. The fibers pass obliquely downward and backward, and end in a tendon which occupies nearly the whole length of the posterior surface of the muscle. This tendon lies in a groove which crosses the posterior surface of the lower end of the tibia, the posterior surface of the talus, and the under surface of the sustentaculum tali of the calcaneus; in the sole of the foot it runs forward between the two heads of the Flexor hallucis brevis, and is inserted into the base of the last phalanx of the great toe. The grooves on the talus and calcaneus, which contain the tendon of the muscle, are converted by tendinous fibers into distinct canals, lined by a mucous sheath. As the tendon passes forward in the sole of the foot, it is situated above, and crosses from the lateral to the medial side of the tendon of the Flexor digitorum longus, to which it is connected by a fibrous slip. [WP,unvetted]." [Wikipedia:Flexor_hallucis_longus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:22593 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/92/Gray442.png/200px-Gray442.png xref: MA:0002301 xref: ncithesaurus:Flexor_Hallucis_Longus is_a: UBERON:0000366 ! flexor muscle is_a: UBERON:0001383 ! implied link automatically realized ! muscle of leg relationship: part_of UBERON:0000978 ! leg [Term] id: UBERON:0001393 name: auditory cortex alt_id: UBERON:FMA_226221-MA_0000942 def: "The primary auditory cortex is the region of the brain that is responsible for processing of auditory information. [WP,unvetted]." [Wikipedia:Auditory_cortex] subset: uberon_slim synonym: "A1 (primary auditory cortex)" RELATED [Wikipedia:Primary_auditory_cortex] synonym: "anterior transverse temporal area 41" RELATED [Wikipedia:Primary_auditory_cortex] synonym: "auditory cortex" RELATED [Wikipedia:Primary_auditory_cortex] synonym: "brodmann area 41" RELATED [Wikipedia:Primary_auditory_cortex] synonym: "brodmann area 41 & 42" RELATED [Wikipedia:Primary_auditory_cortex] synonym: "brodmann area 42" RELATED [Wikipedia:Primary_auditory_cortex] synonym: "posterior transverse temporal area 42" RELATED [Wikipedia:Primary_auditory_cortex] synonym: "primary auditory cortex" RELATED [Wikipedia:Auditory_cortex] synonym: "temporal auditory neocortex" RELATED [GEO:GSE13344] xref: BTO:0004343 xref: FMA:226221 xref: GAID:682 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Brodmann_41_42.png/200px-Brodmann_41_42.png xref: MA:0000942 xref: MESH:A.08.186.211.730.885.213.863.297 xref: ncithesaurus:Auditory_Cortex is_a: UBERON:0002619 {source="FMA"} ! regional part of cerebral cortex relationship: part_of UBERON:0001871 {source="MA"} ! temporal lobe [Term] id: UBERON:0001394 name: axillary artery alt_id: UBERON:FMA_22654-MA_0002573 def: "In human anatomy, the axillary artery is a large blood vessel that conveys oxygenated blood to the lateral aspect of the thorax, the axilla (armpit) and the upper limb. Its origin is at the lateral margin of the first rib, before which it is called the subclavian artery. After passing the lower margin of teres major it becomes the brachial artery. [WP,unvetted]." [Wikipedia:Axillary_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "axillary part of subclavian artery" EXACT [FMA:22654] synonym: "axillary part of trunk of subclavian artery" EXACT [] xref: EMAPA:18749 xref: FMA:22654 xref: GAID:473 xref: galen:AxillaryArtery xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/88/Axillary_limits.PNG/200px-Axillary_limits.PNG xref: MA:0002573 xref: MESH:A.07.231.114.085 xref: ncithesaurus:Axillary_Artery xref: OpenCyc:Mx4rwRh-vZwpEbGdrcN5Y29ycA xref: SCTID:181321001 is_a: UBERON:0000063 ! organ segment is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001009 ! circulatory system relationship: part_of UBERON:0001467 ! shoulder [Term] id: UBERON:0001395 name: thoraco-acromial artery alt_id: UBERON:FMA_22671-MA_0002064 def: "The thoracoacromial artery (acromiothoracic artery; thoracic axis) is a short trunk, which arises from the forepart of the axillary artery, its origin being generally overlapped by the upper edge of the Pectoralis minor. [WP,unvetted]." [Wikipedia:Thoraco-acromial_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "acromiothoracic artery" EXACT [] synonym: "thoracoacromial artery" EXACT [] xref: FMA:22671 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4c/Axillary_branches.PNG/200px-Axillary_branches.PNG xref: MA:0002064 xref: ncithesaurus:Acromial_Thoracic_Artery xref: SCTID:244315002 is_a: UBERON:0001637 ! artery is_a: UBERON:0003233 ! implied link automatically realized ! epithelium of shoulder is_a: UBERON:0003515 ! implied link automatically realized ! forelimb blood vessel relationship: part_of UBERON:0001467 ! shoulder [Term] id: UBERON:0001396 name: lateral thoracic artery alt_id: UBERON:FMA_22674-MA_0001989 def: "In human anatomy, the lateral thoracic artery (or external mammary artery) is a blood vessel that supplies oxygenated blood to the lateral structures of the thorax and breast. It originates from the axillary artery and follows the lower border of the Pectoralis minor muscle to the side of the chest, supplies the Serratus anterior muscle and the Pectoralis major muscle, and sends branches across the axilla to the axillary lymph nodes and Subscapularis muscle. It anastomoses with the internal thoracic artery, subscapular, and intercostal arteries, and with the pectoral branch of the thoracoacromial artery. In the female it supplies an external mammary branch which turns round the free edge of the Pectoralis major and supplies the breasts. [WP,unvetted]." [Wikipedia:Lateral_thoracic_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "external mammary artery" EXACT [] xref: FMA:22674 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4c/Axillary_branches.PNG/200px-Axillary_branches.PNG xref: MA:0001989 xref: ncithesaurus:Lateral_Thoracic_Artery xref: SCTID:206135006 is_a: UBERON:0001637 ! artery is_a: UBERON:0003233 ! implied link automatically realized ! epithelium of shoulder is_a: UBERON:0003515 ! implied link automatically realized ! forelimb blood vessel relationship: part_of UBERON:0001467 ! shoulder [Term] id: UBERON:0001397 name: subscapular artery alt_id: UBERON:FMA_22677-MA_0002050 def: "The subscapular artery, the largest branch of the axillary artery, arises at the lower border of the Subscapularis, which it follows to the inferior angle of the scapula, where it anastomoses with the lateral thoracic and intercostal arteries and with the descending branch of the transverse cervical, and ends in the neighboring muscles. About 4 cm. from its origin it gives off two branches, first the scapular circumflex artery and then the thoracodorsal artery. [WP,unvetted]." [Wikipedia:Subscapular_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:22677 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4c/Axillary_branches.PNG/200px-Axillary_branches.PNG xref: MA:0002050 xref: ncithesaurus:Subscapular_Artery xref: SCTID:244311006 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001398 name: brachial artery alt_id: UBERON:FMA_22689-MA_0001921 def: "The brachial artery is the major blood vessel of the (upper) arm. It is the continuation of the axillary artery beyond the lower margin of teres major muscle. It continues down the ventral surface of the arm until it reaches the cubital fossa at the elbow. It then divides into the radial and ulnar arteries which run down the forearm. In some individuals, the bifurcation occurs much earlier and the ulnar and radial arteries extend through the upper arm. The pulse of the brachial artery is palpable on the anterior aspect of the elbow, medial to the tendon of the biceps, and, with the use of a stethoscope and sphygmomanometer (blood pressure cuff) often used to measure the blood pressure. The brachial artery is closely related to the median nerve; in proximal regions, the median nerve is immediately lateral to the brachial artery. Distally, the median nerve crosses the medial side of the brachial artery and lies anterior to the elbow joint. [WP,unvetted]." [Wikipedia:Brachial_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "brachial part of trunk of subclavian artery" EXACT [] xref: AAO:0010504 xref: FMA:22689 xref: GAID:475 xref: galen:BrachialArtery xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Gray525.png/200px-Gray525.png xref: MA:0001921 xref: MESH:A.07.231.114.139 xref: ncithesaurus:Brachial_Artery xref: OpenCyc:Mx4rwM-i5JwpEbGdrcN5Y29ycA xref: SCTID:181322008 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001399 name: deep brachial artery alt_id: UBERON:FMA_22695-MA_0002026 def: "The arteria profunda brachii (also known as deep artery of the arm and the deep brachial artery) is a large vessel which arises from the medial and back part of the brachial, just below the lower border of the Teres major. [WP,unvetted]." [Wikipedia:Deep_brachial_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "arteria profunda brachii" EXACT [FMA:22695, FMA:TA] synonym: "profunda brachii artery" EXACT [] xref: FMA:22695 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/92/Gray526.png/200px-Gray526.png xref: MA:0002026 xref: SCTID:41065002 is_a: UBERON:0001637 ! artery is_a: UBERON:0003507 ! implied link automatically realized ! arm blood vessel relationship: part_of UBERON:0001460 ! arm [Term] id: UBERON:0001400 name: iliocostalis thoracis alt_id: UBERON:FMA_22703-MA_0002320 def: "The iliocostalis is the muscle immediately lateral to the longissimus that is the nearest to the furrow that separates the epaxial muscles from the hypaxial. It lies very deep to the fleshy portion of the serratus ventralis (serratus anterior). [WP,unvetted]." [Wikipedia:Iliocostalis_thoracis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:22703 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/89/Iliostalis.png/200px-Iliostalis.png xref: MA:0002320 is_a: UBERON:0002251 ! iliocostalis [Term] id: UBERON:0001401 name: longissimus thoracis alt_id: UBERON:FMA_22709-MA_0002339 def: "The longissimus is the muscle lateral to the semispinalis. It is the longest subdivision of the sacrospinalis that extends forward into the transverse processes of the posterior cervical vertebrae. [WP,unvetted]." [Wikipedia:Longissimus_thoracis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "longissimus dorsi" RELATED [BTO:0001651] synonym: "musculus longissimus thoracis" RELATED [BTO:0001651] xref: BTO:0001651 xref: FMA:22709 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1f/Longissimus.png/200px-Longissimus.png xref: MA:0002339 xref: ncithesaurus:Longissimus_Thoracis is_a: UBERON:0000392 ! longissimus [Term] id: UBERON:0001402 name: longissimus cervicis alt_id: UBERON:FMA_22711-MA_0002337 def: "The longissimus is the muscle lateral to the semispinalis. It is the longest subdivision of the sacrospinalis that extends forward into the transverse processes of the posterior cervical vertebrae. [WP,unvetted]." [Wikipedia:Longissimus_cervicis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "musculus longissimus cervicis" RELATED [BTO:0001650] xref: BTO:0001650 xref: FMA:22711 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1f/Longissimus.png/200px-Longissimus.png xref: MA:0002337 xref: ncithesaurus:Longissimus_Cervicis is_a: UBERON:0000392 ! longissimus [Term] id: UBERON:0001403 name: longissimus capitis alt_id: UBERON:FMA_22714-MA_0002336 def: "The longissimus is the muscle lateral to the semispinalis. It is the longest subdivision of the sacrospinalis that extends forward into the transverse processes of the posterior cervical vertebrae. [WP,unvetted]." [Wikipedia:Longissimus_capitis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "musculus longissimus capitis" RELATED [BTO:0001649] synonym: "trachelomastoid muscle" RELATED [BTO:0001649] xref: BTO:0001649 xref: FMA:22714 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1f/Longissimus.png/200px-Longissimus.png xref: MA:0002336 xref: ncithesaurus:Longissimus_Capitis is_a: UBERON:0000392 ! longissimus [Term] id: UBERON:0001404 name: radial artery alt_id: UBERON:FMA_22730-MA_0002034 def: "In human anatomy, the radial artery is the main blood vessel, with oxygenated blood, of the lateral aspect of the forearm. [WP,unvetted]." [Wikipedia:Radial_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:22730 xref: GAID:506 xref: galen:RadialArtery xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a9/Gray1237.svg/200px-Gray1237.svg.png xref: MA:0002034 xref: MESH:A.07.231.114.740 xref: ncithesaurus:Radial_Artery xref: OpenCyc:Mx4rvxzeR5wpEbGdrcN5Y29ycA xref: SCTID:181332001 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001405 name: spinalis thoracis alt_id: UBERON:FMA_22765-MA_0002381 def: "The spinalis is the portion of the erector spinae, a bundle of muscles and tendons, located nearest to the spine. It is divided into three parts. [WP,unvetted]." [Wikipedia:Spinalis_thoracis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:22765 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a4/Spinalis.png/200px-Spinalis.png xref: MA:0002381 xref: ncithesaurus:Spinalis_Thoracis is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0001406 name: ulnar artery alt_id: UBERON:FMA_22796-MA_0002069 def: "The ulnar artery is the main blood vessel, with oxygenated blood, of the medial aspect of the forearm. It arises from the brachial artery and terminates in the superficial palmar arch, which joins with the superficial branch of the radial artery. It is palpable on the anterior and medial aspect of the wrist. Along its course, it is accompanied by a similarly named vein or veins, the ulnar vein or ulnar veins. The ulnar artery, the larger of the two terminal branches of the brachial, begins a little below the bend of the elbow in the cubital fossa, and, passing obliquely downward, reaches the ulnar side of the forearm at a point about midway between the elbow and the wrist. It then runs along the ulnar border to the wrist, crosses the transverse carpal ligament on the radial side of the pisiform bone, and immediately beyond this bone divides into two branches, which enter into the formation of the superficial and deep volar arches. [WP,unvetted]." [Wikipedia:Ulnar_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:22796 xref: GAID:515 xref: galen:UlnarArtery xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a9/Gray1237.svg/200px-Gray1237.svg.png xref: MA:0002069 xref: MESH:A.07.231.114.920 xref: ncithesaurus:Ulnar_Artery xref: OpenCyc:Mx4rwAF2PJwpEbGdrcN5Y29ycA xref: SCTID:181333006 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001407 name: semispinalis thoracis alt_id: UBERON:FMA_22828-MA_0002374 def: "The Semispinalis dorsi (or semispinalis thoracis) consists of thin, narrow, fleshy fasciculi, interposed between tendons of considerable length. It arises by a series of small tendons from the transverse processes of the sixth to the tenth thoracic vertebræ, and is inserted, by tendons, into the spinous processes of the upper four thoracic and lower two cervical vertebrae. [WP,unvetted]." [Wikipedia:Semispinalis_thoracis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:22828 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/65/Semispinalis.png/200px-Semispinalis.png xref: MA:0002374 xref: ncithesaurus:Semispinalis_Thoracis is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0001408 name: semispinalis cervicis alt_id: UBERON:FMA_22829-MA_0002373 def: "The semispinalis cervicis (semispinalis colli), thicker than the semispinalis dorsi, arises by a series of tendinous and fleshy fibers from the transverse processes of the upper five or six thoracic vertebræ, and is inserted into the cervical spinous processes, from the axis to the fifth inclusive. The fasciculus connected with the axis is the largest, and is chiefly muscular in structure. [WP,unvetted]." [Wikipedia:Semispinalis_cervicis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:22829 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7f/Gray384.png/200px-Gray384.png xref: MA:0002373 xref: ncithesaurus:Semispinalis_Cervicis is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0001409 name: semispinalis capitis alt_id: UBERON:FMA_22830-MA_0002372 def: "The Semispinalis capitis (Complexus) is situated at the upper and back part of the neck, deep to the Splenius, and medial to the Longissimus cervicis and capitis. It arises by a series of tendons from the tips of the transverse processes of the upper six or seven thoracic and the seventh cervical vertebræ, and from the articular processes of the three cervical above this. The tendons, uniting, form a broad muscle, which passes upward, and is inserted between the superior and inferior nuchal lines of the occipital bone. The medial part, usually more or less distinct from the remainder of the muscle, is frequently termed the Spinalis capitis; it is also named the Biventer cervicis since it is traversed by an imperfect tendinous inscription. [WP,unvetted]." [Wikipedia:Semispinalis_capitis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:22830 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7f/Gray384.png/200px-Gray384.png xref: MA:0002372 xref: ncithesaurus:Semispinalis_Capitis is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0001410 name: common palmar digital artery alt_id: UBERON:FMA_22852-MA_0001957 def: "Three common palmar digital arteries arise from the convexity of the superficial palmar arch and proceed distally on the second, third, and fourth lumbricales muscles." [Wikipedia:Common_palmar_digital_artery] comment: the MA term, even though plural, represents the singular, as it is an isa child of artery subset: uberon_slim synonym: "common palmar digital arteries" EXACT [] xref: FMA:22852 xref: MA:0001957 xref: ncithesaurus:Common_Palmar_Digital_Artery xref: SCTID:38396009 is_a: UBERON:0006141 ! palmar digital artery [Term] id: UBERON:0001411 name: basilic vein alt_id: UBERON:FMA_22908-MA_0002086 def: "In human anatomy, the basilic vein is a large superficial vein of the upper limb that helps drain parts of hand and forearm. It originates on the medial (ulnar) side of the dorsal venous network of the hand, and it travels up the base of the forearm and arm. Most of its course is superficial; it generally travels in the subcutaneous fat and other fasciae that lie superficial to the muscles of the upper extremity. Because of this, it is usually visible through the skin. Near the region anterior to the cubital fossa, in the bend of the elbow joint, the basilic vein usually connects with the other large superficial vein of the upper extremity, the cephalic vein, via the median cubital vein. The layout of superficial veins in the forearm is highly variable from person to person, and there are generally a variety of other unnamed superficial veins that the basilic vein communicates with. About halfway up the arm proper (the part between the shoulder and elbow), the basilic vein goes deep, travelling under the muscles. There, around the lower border of the teres major muscle, the anterior and posterior circumflex humeral veins feed into it, just before it joins the brachial veins to form the axillary vein. Along with other superficial veins in the forearm, the basilic vein is a possible site for venipuncture. [WP,unvetted]." [Wikipedia:Basilic_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "basilic vein of forearm" EXACT [] synonym: "vena basilica antebrachii" EXACT [FMA:22908, FMA:TA] xref: FMA:22908 xref: galen:BasilicVein xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e9/Gray576.png/200px-Gray576.png xref: MA:0002086 xref: ncithesaurus:Basilic_Vein xref: OpenCyc:Mx4rvwrxEpwpEbGdrcN5Y29ycA xref: SCTID:181393008 is_a: UBERON:0001638 ! vein is_a: UBERON:0003507 ! implied link automatically realized ! arm blood vessel relationship: part_of UBERON:0001460 ! arm relationship: tributary_of UBERON:0000985 {source="FMA/obol"} ! axillary vein relationship: tributary_of UBERON:0001587 {source="FMA/obol"} ! subclavian vein [Term] id: UBERON:0001412 name: common palmar digital vein alt_id: UBERON:FMA_22923-MA_0002121 comment: Some sources distinguish between the "proper palmar digital veins", which are more distal, and the "common palmar digital veins", which are more proximal. synonym: "proximal palmar digital vein" EXACT [Wikipedia:Palmar_digital_veins] xref: FMA:22923 xref: MA:0002121 is_a: UBERON:0004563 ! forelimb digital vein [Term] id: UBERON:0001413 name: brachial vein alt_id: UBERON:FMA_22934-MA_0002087 def: "In human anatomy, the brachial veins are venae comitantes of the brachial artery in the arm proper. Because they are deep to muscle, they are considered deep veins. Their course is that of the brachial artery (in reverse): they begin where radial veins and ulnar veins join (corresponding to the bifurcation of the brachial artery). They end at the inferior border of the teres major muscle. At this point, the brachial veins join the basilic vein to form the axillary vein. The brachial veins also have small tributaries that drain the muscles of the upper arm, such as biceps brachii muscle and triceps brachii muscle. [WP,unvetted]." [Wikipedia:Brachial_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: AAO:0010512 xref: FMA:22934 xref: galen:BrachialVein xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e9/Gray576.png/200px-Gray576.png xref: MA:0002087 xref: ncithesaurus:Brachial_Vein xref: OpenCyc:Mx4rwS3In5wpEbGdrcN5Y29ycA xref: SCTID:181390006 is_a: UBERON:0001638 ! vein is_a: UBERON:0003507 ! implied link automatically realized ! arm blood vessel relationship: part_of UBERON:0001460 ! arm relationship: tributary_of UBERON:0000985 {source="FMA/obol"} ! axillary vein relationship: tributary_of UBERON:0001587 {source="FMA/obol"} ! subclavian vein [Term] id: UBERON:0001414 name: median cubital vein alt_id: UBERON:FMA_22963-MA_0002176 def: "In human anatomy, the median cubital vein (or median basilic vein) a superficial vein of the upper limb. It connects the basilic and cephalic vein and is often used for venipuncture (taking blood). It lies in the cubital fossa superficial to the bicipital aponeurosis. There exists a fair amount of variation of the median cubital vein. More commonly the vein forms an H-pattern with the cephalic and basilic veins making up the sides. Other forms include an M-pattern, where the vein branches to the cephalic and basilic veins. [WP,unvetted]." [Wikipedia:Median_cubital_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:22963 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/ba/Gray574.png/200px-Gray574.png xref: MA:0002176 xref: OpenCyc:Mx4rvzQSYZwpEbGdrcN5Y29ycA xref: SCTID:181392003 is_a: UBERON:0001638 ! vein relationship: tributary_of UBERON:0000985 {source="FMA/obol"} ! axillary vein relationship: tributary_of UBERON:0001411 {source="FMA/obol"} ! basilic vein relationship: tributary_of UBERON:0001587 {source="FMA/obol"} ! subclavian vein [Term] id: UBERON:0001415 name: skin of pelvis alt_id: UBERON:FMA_22984-MA_0000546 def: "A zone of skin that is part of a pelvis [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "pelvic skin" EXACT [] synonym: "pelvis skin" EXACT [] synonym: "pelvis zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of pelvis" EXACT [OBOL:automatic] xref: FMA:22984 xref: MA:0000546 xref: SCTID:181517009 is_a: UBERON:0001085 ! skin of trunk is_a: UBERON:0003836 ! implied link automatically realized ! abdominal segment skin relationship: part_of UBERON:0002355 intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0002355 ! pelvis relationship: part_of UBERON:0001085 ! skin of trunk relationship: part_of UBERON:0002355 ! pelvis [Term] id: UBERON:0001416 name: skin of abdomen alt_id: UBERON:FMA_22988-MA_0000523 def: "A zone of skin that is part of an abdomen [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "abdomen skin" EXACT [] synonym: "abdomen zone of skin" EXACT [OBOL:automatic] synonym: "abdominal skin" EXACT [] synonym: "skin of abdomen proper" EXACT [FMA:22988] synonym: "zone of skin of abdomen" EXACT [OBOL:automatic] xref: EFO:0000214 xref: FMA:22988 xref: FMA:23000 xref: MA:0000523 xref: ncithesaurus:Abdominal_Skin xref: SCTID:361707007 is_a: UBERON:0003836 {source="MA"} ! abdominal segment skin relationship: part_of UBERON:0000916 intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0000916 ! abdomen relationship: part_of UBERON:0000916 {source="MA"} ! abdomen [Term] id: UBERON:0001417 name: skin of neck alt_id: UBERON:FMA_23021-MA_0000590 def: "A zone of skin that is part of a neck [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "neck (volume) zone of skin" EXACT [OBOL:automatic] synonym: "neck skin" EXACT [] synonym: "neck zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of neck" EXACT [OBOL:automatic] synonym: "zone of skin of neck (volume)" EXACT [OBOL:automatic] xref: FMA:23021 xref: FMA:23022 xref: MA:0000590 xref: ncithesaurus:Neck_Skin xref: SCTID:361705004 is_a: UBERON:0000014 ! zone of skin relationship: part_of UBERON:0000974 intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0000974 ! neck relationship: part_of UBERON:0000974 ! neck [Term] id: UBERON:0001418 name: skin of thorax alt_id: UBERON:FMA_23028-MA_0000564 def: "A zone of skin that is part of a thorax [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "thoracic skin" EXACT [] synonym: "thorax skin" EXACT [] synonym: "thorax zone of skin" EXACT [OBOL:automatic] synonym: "upper body skin" RELATED [] synonym: "zone of skin of thorax" EXACT [OBOL:automatic] xref: FMA:23028 xref: FMA:23029 xref: MA:0000564 xref: SCTID:281723000 is_a: UBERON:0001085 ! skin of trunk relationship: part_of UBERON:0000915 intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0000915 ! thoracic segment of trunk relationship: part_of UBERON:0000915 ! thoracic segment of trunk [Term] id: UBERON:0001419 name: skin of limb alt_id: UBERON:FMA_23100-MA_0000694 def: "A zone of skin that is part of a limb [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "limb skin" EXACT [] synonym: "limb zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of limb" EXACT [OBOL:automatic] xref: FMA:23100 xref: MA:0000694 xref: SCTID:314403009 is_a: UBERON:0000014 ! zone of skin is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0002101 intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0002101 ! limb relationship: part_of UBERON:0002101 ! limb [Term] id: UBERON:0001420 name: subscapular vein alt_id: UBERON:FMA_23113-MA_0002224 comment: This class was created automatically from a combination of ontologies xref: FMA:23113 xref: MA:0002224 is_a: UBERON:0001638 ! vein relationship: tributary_of UBERON:0000985 {source="FMA/obol"} ! axillary vein relationship: tributary_of UBERON:0001587 {source="FMA/obol"} ! subclavian vein [Term] id: UBERON:0001421 name: pectoral girdle alt_id: UBERON:FMA_23217-MA_0000292-MIAA_0000181-XAO_0003063-ZFA_0000407 def: "Subdivision of limb or fin consisting of bones which connects the upper limb or fin to the axial skeleton on each side. It consists of the clavicle and scapula in humans and, in those species with three bones in the pectoral girdle, the coracoid. Some mammalian species (e.g. the dog and the horse) have only the scapula. In humans, the only joints between the shoulder girdle and axial skeleton are the sternoclavicular joints on each side. No joint exists between each scapula and the rib cage; instead the muscular connection between the two permits relatively great mobility of the shoulder girdle in relation to the pelvic girdle. In those species having only the scapula, no joint exists between the forelimb and the thorax, the only attachment being muscular[WP]. Subdivision of free upper limb, which is the proximal segment of an upper limb and links the free upper limb to the trunk; it is demarcated by the plane of the surface of the glenoid fossa from the free upper limb; together with the free upper limb, it constitutes the upper limb. Examples: There are only two instances, right and left pectoral girdles[FMA]." [FMA:23217, Wikipedia:Pectoral_girdle] comment: Note that this class describes the subdivision of the limb/fin, NOT the skeleton within. See also: skeleton of pectoral girdle (UBERON:0007831). TODO - distinguish free limb and limb subset: uberon_slim subset: vertebrate_core synonym: "cingulum membri superioris" EXACT [FMA:23217, FMA:TA] synonym: "girdle - pectoral" EXACT [] synonym: "pectoral girdle region" EXACT [] xref: FMA:23217 is_a: UBERON:0007823 {source="FMA"} ! limb/fin girdle relationship: part_of UBERON:0004710 intersection_of: UBERON:0007823 ! limb/fin girdle intersection_of: part_of UBERON:0004710 ! limb/fin of anterior region of body [Term] id: UBERON:0001422 name: facial lymphatic vessel alt_id: UBERON:FMA_233946-ZFA_0005108 def: "A lymphatic vessel that is part of a face [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies subset: vertebrate_core synonym: "buccal lymphatic vessel" EXACT [] synonym: "face lymph vessel" EXACT [OBOL:automatic] synonym: "face lymphatic vessel" EXACT [OBOL:automatic] synonym: "FL" RELATED [] synonym: "lymph vessel of face" EXACT [OBOL:automatic] synonym: "lymphatic vessel of face" EXACT [OBOL:automatic] xref: FMA:233946 xref: TAO:0005108 xref: ZFA:0005108 is_a: UBERON:0001473 ! lymphatic vessel relationship: part_of UBERON:0001456 intersection_of: UBERON:0001473 ! lymphatic vessel intersection_of: part_of UBERON:0001456 ! face [Term] id: UBERON:0001423 name: radius alt_id: UBERON:FMA_23463-MA_0001357 def: "The radius is one of the two large bones of the forearm, the other being the ulna. It extends from the lateral side of the elbow to the thumb side of the wrist and runs parallel to the ulna, which exceeds it in length and size. It is a long bone, prism-shaped and slightly curved longitudinally. The radius articulates with the capitulum of the humerus, the radial notch and the head of the ulna. The corresponding bone in the lower leg is the tibia.." [Wikipedia:Radius_(bone)] comment: In four-legged animals, the radius is the main load-bearing bone of the lower forelimb. Its structure is similar in most terrestrial tetrapods, but it may be fused with the ulna in some mammals (such as horses) and reduced or modified in animals with flippers or vestigial forelimbs [ISBN:0-03-910284-X] subset: uberon_slim xref: AAO:0000788 xref: EMAPA:18466 xref: EMAPA:19103 xref: FMA:23463 xref: GAID:185 xref: galen:Radius xref: MA:0001357 xref: MESH:A.02.835.232.087.702 xref: ncithesaurus:Radius xref: OpenCyc:Mx4rwUsDcZwpEbGdrcN5Y29ycA xref: SCTID:181940002 is_a: UBERON:0002495 ! long bone is_a: UBERON:0003466 ! implied link automatically realized ! lower arm bone is_a: UBERON:0003607 ! implied link automatically realized ! forelimb long bone relationship: part_of UBERON:0001440 ! forelimb skeleton relationship: part_of UBERON:0002386 ! forelimb zeugopod [Term] id: UBERON:0001424 name: ulna alt_id: UBERON:FMA_23466-MA_0001358 def: "The ulna is a long bone, prismatic in form. In anatomical position the ulna is placed at the medial side of the forearm closest to the body, parallel with the radius on both arms. [WP,unvetted]." [Wikipedia:Ulna] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: AAO:0000789 xref: EMAPA:18467 xref: EMAPA:19104 xref: FMA:23466 xref: GAID:188 xref: galen:Ulna xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/67/Illu_upper_extremity.jpg/200px-Illu_upper_extremity.jpg xref: MA:0001358 xref: MESH:A.02.835.232.087.911 xref: ncithesaurus:Ulna xref: OpenCyc:Mx4rwPtIM5wpEbGdrcN5Y29ycA xref: SCTID:181948009 is_a: UBERON:0002495 ! long bone is_a: UBERON:0003466 ! implied link automatically realized ! lower arm bone is_a: UBERON:0003607 ! implied link automatically realized ! forelimb long bone relationship: part_of UBERON:0001440 ! forelimb skeleton relationship: part_of UBERON:0002386 ! forelimb zeugopod [Term] id: UBERON:0001425 name: pectoral lymphatic vessel alt_id: UBERON:FMA_234865-ZFA_0005107 comment: This class was created automatically from a combination of ontologies subset: vertebrate_core synonym: "PL" RELATED [] xref: FMA:234865 xref: TAO:0005107 xref: ZFA:0005107 is_a: UBERON:0001473 ! lymphatic vessel [Term] id: UBERON:0001426 name: jugular lymphatic vessel alt_id: UBERON:FMA_234908-ZFA_0005109 comment: This class was created automatically from a combination of ontologies subset: vertebrate_core synonym: "JL" RELATED [] xref: FMA:234908 xref: TAO:0005109 xref: ZFA:0005109 is_a: UBERON:0001473 ! lymphatic vessel [Term] id: UBERON:0001427 name: scaphoid alt_id: UBERON:FMA_23709-MA_0002555 def: "The scaphoid Bone is situated at the radial (radius bone) side of the carpus, or laterally between the hand and the forearm in standard medical posture (thumbs pointing outwards). The scaphoid bone is the largest bone of the proximal row of wrist bones, its long axis being from above downward, lateralward, and forward. It is approximately the size and shape of a medium sized cashew. The bone takes a semi-similar form of a boat. In reptiles, birds, and amphibians, this bone is instead commonly referred to as the radiale, because of its articulation with the radius. [WP,unvetted]." [Wikipedia:Scaphoid] comment: todo - check AAO placement; in rodents this is fused with the lunate to make the scapholunate subset: uberon_slim synonym: "navicular bone of hand" EXACT [] synonym: "navicular of hand" RELATED [] synonym: "os carpi radiale" EXACT [] synonym: "os naviculare manus" RELATED [Wikipedia:Scaphoid_bone] synonym: "os scaphoideum" RELATED [Wikipedia:Scaphoid_bone] synonym: "radial carpal bone" RELATED [] synonym: "radiale" RELATED [AAO:0000790, Wikipedia:Scaphoid] synonym: "scaphoid bone" EXACT [] xref: AAO:0000790 xref: FMA:23709 xref: GAID:180 xref: galen:Scaphoid xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/50/Carpus.png/200px-Carpus.png xref: MA:0002555 xref: MESH:A.02.835.232.087.144.650 xref: ncithesaurus:Scaphoid_Bone xref: OpenCyc:Mx4rwAwWe5wpEbGdrcN5Y29ycA xref: SCTID:181958008 is_a: UBERON:0001480 ! proximal carpal bone relationship: part_of UBERON:0001462 ! wrist [Term] id: UBERON:0001428 name: lunate alt_id: UBERON:FMA_23712-MA_0002556 def: "The lunate bone (semilunar bone) is a carpal bone (wrist bone) in the human hand that may be distinguished by its deep concavity and crescentic outline. It is situated in the center of the proximal row of the carpus (wrist) region between the fore arm and hand (manus). In standard medical posture, the lunate carpal bone is situated between the lateral Scaphoid bone and medial Triquetral bone. The lunate carpal bone straddles distally the bordering ulna and radius bones and proximally to distal carpus (wrist) Trapezium bone and Trapezoid bone[WP]." [Wikipedia:Lunate_bone] subset: uberon_slim synonym: "intermediate carpal bone" RELATED [] synonym: "lunate bone" EXACT [] synonym: "os carpi intermedium" EXACT [] synonym: "semilunar" RELATED [] synonym: "semilunar bone" EXACT [] xref: FMA:23712 xref: GAID:181 xref: galen:Lunate xref: MA:0002556 xref: MESH:A.02.835.232.087.144.663 xref: ncithesaurus:Lunate_Bone xref: SCTID:181959000 is_a: UBERON:0001480 {source="FMA"} ! proximal carpal bone relationship: part_of UBERON:0001462 {source="FMA"} ! wrist relationship: part_of UBERON:0007960 {source="MA"} ! scapholunate [Term] id: UBERON:0001429 name: pisiform alt_id: UBERON:FMA_23718-MA_0001339 def: "The pisiform bone (also called pisiform or lentiform bone) is a small knobbly, pea-shaped wrist bone. The pisiform bone is found in the proximal row of the carpus. It is located where the ulna (inner bone of the forearm when in anatomical position) joins the carpus (wrist). It articulates only with the triquetral. It is a sesamoid bone. The pisiform bone may be known by its small size, and by its presenting a single articular facet. It is situated on a plane anterior to the other carpal bones and is spheroidal in form. The etymology derives from the Latin pīsum which means 'pea.' [WP,unvetted]." [Wikipedia:Pisiform_bone] comment: todo - classify as sesamoid? subset: uberon_slim synonym: "accessory carpal bone" RELATED [] synonym: "pisiform bone" EXACT [] xref: FMA:23718 xref: galen:Pisiform xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/50/Carpus.png/200px-Carpus.png xref: MA:0001339 xref: ncithesaurus:Pisiform_Bone xref: OpenCyc:Mx4rvtByTZwpEbGdrcN5Y29ycA xref: SCTID:9181003 is_a: UBERON:0001479 ! sesamoid bone is_a: UBERON:0001480 ! proximal carpal bone is_a: UBERON:0007997 ! implied link automatically realized ! sesamoid bone of hand relationship: part_of UBERON:0001462 ! wrist [Term] id: UBERON:0001430 name: trapezium alt_id: UBERON:FMA_23721-MA_0001340 def: "." [Wikipedia:Trapezium] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "greater multangular bone" EXACT [] synonym: "greater multiangular" RELATED [] synonym: "hand distal carpal bone 1" RELATED [] synonym: "trapezial bone" EXACT [] synonym: "trapezium bone" EXACT [] xref: FMA:23721 xref: galen:Trapezium xref: MA:0001340 xref: ncithesaurus:Trapezial_Bone xref: OpenCyc:Mx4rv3CbrJwpEbGdrcN5Y29ycA xref: SCTID:361780007 is_a: UBERON:0001481 ! distal carpal bone relationship: part_of UBERON:0001462 ! wrist [Term] id: UBERON:0001431 name: trapezoid alt_id: UBERON:FMA_23724-MA_0001341 def: "." [Wikipedia:Trapezoid] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "hand distal carpal bone 2" RELATED [] synonym: "lesser multangular bone" EXACT [] synonym: "lesser multiangular" RELATED [] synonym: "trapezoid bone" EXACT [] xref: FMA:23724 xref: galen:Trapezoid xref: MA:0001341 xref: ncithesaurus:Trapezoid_Bone xref: OpenCyc:Mx4rvVvsjpwpEbGdrcN5Y29ycA xref: OpenCyc:Mx4rvxNWBJwpEbGdrcN5Y29ycA xref: SCTID:361781006 is_a: UBERON:0001481 ! distal carpal bone relationship: part_of UBERON:0001462 ! wrist [Term] id: UBERON:0001432 name: capitate alt_id: UBERON:FMA_23727-MA_0001342 def: "The capitate bone is a bone in the human hand. The capitate bone is the largest of the carpal bones, and occupies the center of the wrist. It presents, above, a rounded portion or head, which is received into the concavity formed by the scaphoid and lunate bones; a constricted portion or neck; and below this, the body. The bone is also found in many other mammals, and is homologous with the 'third distal carpal' of reptiles and amphibians. The etymology derives from the Latin capitātus, 'having a head,' from capit-, meaning 'head.' [WP,unvetted]." [Wikipedia:Capitate, Wikipedia:Capitate_bone] comment: AAO xref sourced from WP - todo - decide whether to split class subset: uberon_slim synonym: "capitate bone" EXACT [] synonym: "hand distal carpal bone 3" RELATED [] synonym: "os magnum (carpus)" EXACT [] xref: AAO:0000920 xref: FMA:23727 xref: galen:Capitate xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/50/Carpus.png/200px-Carpus.png xref: MA:0001342 xref: ncithesaurus:Capitate_Bone xref: OpenCyc:Mx4rvZFPrZwpEbGdrcN5Y29ycA xref: SCTID:181964001 is_a: UBERON:0001481 ! distal carpal bone relationship: part_of UBERON:0001462 ! wrist [Term] id: UBERON:0001433 name: hamate alt_id: UBERON:FMA_23730-MA_0001343 def: "The hamate bone (unciform bone) is a bone in the human hand that may be readily distinguished by its wedge-shaped form, and the hook-like process which projects from its volar surface. It is situated at the medial and lower angle of the carpus, with its base downward, resting on the fourth and fifth metacarpal bones, and its apex directed upward and lateralward. The bone is also found in many other mammals, and is homologous with the 'fourth distal carpal' of reptiles and amphibians. The etymology derives from the Latin hamatus 'hooked,' from hamus which means 'hook.' [WP,unvetted]." [Wikipedia:Hamate, Wikipedia:Hamate_bone] comment: AAO xref sourced from WP - todo - decide whether to split class subset: uberon_slim synonym: "hamate bone" EXACT [] synonym: "hand distal carpal bone 4" RELATED [] synonym: "unciform" RELATED [] synonym: "unciform bone" EXACT [] synonym: "uncinate" RELATED [] xref: AAO:0000932 xref: FMA:23730 xref: galen:Hamate xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/50/Carpus.png/200px-Carpus.png xref: MA:0001343 xref: ncithesaurus:Hamate_Bone xref: OpenCyc:Mx4rwFTmuJwpEbGdrcN5Y29ycA xref: SCTID:181967008 is_a: UBERON:0001481 ! distal carpal bone relationship: part_of UBERON:0001462 ! wrist [Term] id: UBERON:0001434 name: skeletal system alt_id: UBERON:FMA_23875-FMA_23881-MA_0000018-MIAA_0000032-XAO_0003060-ZFA_0000434 def: "Organ system subdivision which consists of the skeleton and the articular system.[FMA]" [AAO:0000566, FMA:FMA, Wikipedia:Skeleton] comment: Note that GO defines skeletal system very generically: The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) GO:0001501; however, all annotations are to vertebrates subset: uberon_slim subset: vertebrate_core synonym: "set of all bones and joints" NARROW SENSU [] synonym: "skeleton system" EXACT [] synonym: "Skelettsystem" RELATED [BTO:0001486] xref: AAO:0000566 xref: BTO:0001486 xref: EFO:0000806 xref: EHDAA2:0003168 xref: EV:0100139 xref: FMA:23881 xref: MA:0000018 xref: MESH:A.02 xref: ncithesaurus:Skeletal_System xref: OG:0001254 xref: OpenCyc:Mx4rvVi1rpwpEbGdrcN5Y29ycA xref: TAO:0000434 xref: VAO:0000027 xref: XAO:0003060 xref: ZFA:0000434 is_a: UBERON:0000467 ! anatomical system is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure disjoint_from: UBERON:0000949 ! endocrine system disjoint_from: UBERON:0000990 ! reproductive system disjoint_from: UBERON:0001004 ! respiratory system disjoint_from: UBERON:0001007 ! digestive system disjoint_from: UBERON:0001008 ! excretory system disjoint_from: UBERON:0001009 ! circulatory system disjoint_from: UBERON:0001016 ! nervous system disjoint_from: UBERON:0001033 ! gustatory system disjoint_from: UBERON:0001474 ! bone disjoint_from: UBERON:0002204 ! musculoskeletal system disjoint_from: UBERON:0002294 ! biliary system disjoint_from: UBERON:0002330 ! exocrine system disjoint_from: UBERON:0002390 ! hematopoietic system disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system relationship: part_of UBERON:0002204 ! musculoskeletal system relationship: spatially_disjoint_from UBERON:0001016 ! nervous system [Term] id: UBERON:0001435 name: carpal bone alt_id: UBERON:FMA_23889-MA_0000296 def: "In tetrapods, the carpals is the sole cluster of the bones in the wrist between the radius and ulna and the metacarpus. The bones of the carpus do not belong to individual fingers (or toes in quadrupeds), whereas those of the metacarpus do. The corresponding part of the foot is the tarsus. The carpal bones allow the wrist to move and rotate vertically, horizontally and laterally. In human anatomy, the main role of the carpus is to facilitate effective positioning of the hand and powerful use of the extensors and flexors of the forearm, but the mobility of individual carpal bones increase the freedom of movements at the wrist. [WP,unvetted]." [Wikipedia:Carpal_bone] subset: uberon_slim synonym: "bone of carpus" EXACT [] xref: EMAPA:25056 xref: FMA:23889 xref: GAID:179 xref: galen:CarpalBone xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/58/Carpus.svg/200px-Carpus.svg.png xref: MA:0000296 xref: MESH:A.02.835.232.087.144 xref: ncithesaurus:Carpal_Bone xref: SCTID:83936004 is_a: UBERON:0003656 ! mesopodium bone is_a: UBERON:0005897 ! implied link automatically realized ! hand bone relationship: part_of UBERON:0004452 intersection_of: UBERON:0001474 ! bone intersection_of: part_of UBERON:0004452 ! carpus [Term] id: UBERON:0001436 name: phalanx of finger alt_id: UBERON:FMA_23914-MA_0000306 def: "A phalanx that is part of a forelimb[Obol]." [Obol:obol] comment: This class was created automatically from a combination of ontologies synonym: "digitus manus phalanx" EXACT [OBOL:automatic] synonym: "finger phalanx" EXACT [OBOL:automatic] synonym: "hand digit phalanx" EXACT [OBOL:automatic] synonym: "hand phalanx" EXACT [] synonym: "hand phalanx" EXACT [MA:0000306] synonym: "phalanges of fore digit" RELATED PLURAL [AAO:0000947] synonym: "phalanx of digit of hand" EXACT [OBOL:automatic] synonym: "phalanx of digitus manus" EXACT [OBOL:automatic] synonym: "phalanx of fore digit" EXACT [] synonym: "phalanx of hand" EXACT [] synonym: "phalanx of hand digit" EXACT [OBOL:automatic] xref: AAO:0000947 xref: FMA:23914 xref: MA:0000306 xref: ncithesaurus:Hand_Phalanx xref: SCTID:181976001 is_a: UBERON:0003221 ! implied link automatically realized ! phalanx is_a: UBERON:0003607 ! implied link automatically realized ! forelimb long bone is_a: UBERON:0004249 ! implied link automatically realized ! hand digit bone relationship: part_of UBERON:0002389 intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0002389 ! hand digit [Term] id: UBERON:0001437 name: epiphysis alt_id: UBERON:FMA_24012-ZFA_0000019 def: "Subdivision of long bone which forms its expanded proximal or distal articular end; together with other the subdivisions of long bone, it constitutes the long bone. Examples: proximal epiphysis of humerus, distal epiphysis of femur.[FMA]" [FMA:FMA, Wikipedia:Epiphysis] comment: see also: annular epiphysis subset: uberon_slim synonym: "end of long bone" EXACT [] synonym: "epiphyses" EXACT PLURAL [] synonym: "long bone epiphysis" EXACT [] xref: AAO:0000742 xref: BTO:0000413 xref: FMA:24012 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/94/Illu_long_bone.jpg/200px-Illu_long_bone.jpg xref: MA:0001362 xref: MESH:A.02.835.232.251 xref: ncithesaurus:Long_Bone_Epiphysis xref: SCTID:244701002 is_a: UBERON:0005055 ! zone of long bone [Term] id: UBERON:0001438 name: metaphysis alt_id: UBERON:FMA_24014-MA_0001363 def: "Subdivision of diaphysis which forms the proximal or distal end of diaphysis next to the epiphysis; together with diaphysis proper, it constitutes the diaphysis. Examples: proximal metaphysis of humerus, distal metaphysis of femur.[FMA]" [FMA:FMA, Wikipedia:Metaphysis] comment: adjacent to or containing epiphyseal plate? Note in FMA the metaphysis is part of the diaphysis, but not in MA. In the diagram in WP, it appears to be adjacent, not part_of. subset: uberon_slim synonym: "diaphyseal end of long bone" EXACT [] synonym: "long bone metaphysis" EXACT [] synonym: "metaphyses" EXACT PLURAL [] xref: FMA:24014 xref: MA:0001363 xref: ncithesaurus:Metaphysis xref: SCTID:304581004 is_a: UBERON:0005055 ! zone of long bone relationship: part_of UBERON:0004769 ! diaphysis [Term] id: UBERON:0001439 name: compact bone alt_id: UBERON:FMA_24018-MA_0001461 def: "one of the two types of osseous tissue that form bones. Compact/Cortical bone facilitates bone's main functions: to support the body, protect organs, provide levers for movement, and store and release chemical elements, mainly calcium. As its name implies, cortical bone forms the cortex, or outer shell, of most bones. Again, as its name implies, compact bone is much denser than cancellous bone, which is the other type of osseous tissue. Furthermore, it is harder, stronger and stiffer than cancellous bone. Cortical bone contributes about 80% of the weight of a human skeleton. The primary anatomical and functional unit of cortical bone is the osteon.." [Wikipedia:Compact_bone] comment: MP distinguishes compact/cortical bone. in other AOs they are syns subset: uberon_slim synonym: "bony cortex" EXACT [HP:0002753] synonym: "compact bone tissue" EXACT [] synonym: "cortical bone" EXACT [] synonym: "cortical bone tissue" EXACT [] synonym: "cortical region of bone" EXACT [] synonym: "substantia compacta (pars ossea)" EXACT [] synonym: "substantia corticalis" EXACT [FMA:24018, FMA:TA] xref: FMA:24018 xref: galen:CorticalBone xref: MA:0001461 xref: ncithesaurus:Cortical_Bone xref: SCTID:361728003 is_a: UBERON:0002481 ! bone tissue relationship: part_of UBERON:0002482 ! lamellar bone [Term] id: UBERON:0001440 name: forelimb skeleton alt_id: UBERON:FMA_24139-MA_0000612 def: "A subdivision of skeletal system that is part of a forelimb [Obol]." [OBOL:automatic] comment: TODO - split skeleton from single bone synonym: "bones of upper limb" EXACT [] synonym: "fore limb skeleton" EXACT [] synonym: "forelimb skeleton" EXACT [OG:0001256] synonym: "ossa membri superioris" EXACT [FMA:24139, FMA:TA] synonym: "set of bones of upper limb" EXACT [] synonym: "skeleton of upper limb" EXACT [FMA:24139] synonym: "upper limb skeleton" EXACT [] xref: AAO:0000202 xref: EHDAA2:0002222 xref: FMA:24139 xref: OG:0001256 xref: XAO:0003061 is_a: UBERON:0004381 ! implied link automatically realized ! skeleton of limb relationship: part_of UBERON:0002102 intersection_of: UBERON:0000075 ! subdivision of skeletal system intersection_of: part_of UBERON:0002102 ! forelimb relationship: part_of UBERON:0002102 {source="FMA"} ! forelimb [Term] id: UBERON:0001441 name: hindlimb skeleton alt_id: UBERON:FMA_24140-MA_0000670 comment: editor note: consider adding subclasses for stylopod and zeugopod subset: uberon_slim synonym: "bones of lower limb" EXACT [] synonym: "hind limb skeleton" EXACT [XAO:0003062] synonym: "hind limb subdivision of skeleton" EXACT [OBOL:automatic] synonym: "hindlimb skeleton" EXACT [OG:0001255] synonym: "hindlimb subdivision of skeleton" EXACT [OBOL:automatic] synonym: "inferior member subdivision of skeleton" EXACT [OBOL:automatic] synonym: "lower extremity subdivision of skeleton" EXACT [OBOL:automatic] synonym: "lower limb skeleton" EXACT [] synonym: "ossa membri inferioris" EXACT [FMA:24140, FMA:TA] synonym: "set of bones of lower limb" EXACT [] synonym: "skeleton of lower limb" EXACT [FMA:24140] synonym: "subdivision of skeleton of hind limb" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of hindlimb" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of inferior member" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of lower extremity" EXACT [OBOL:automatic] xref: AAO:0000217 xref: EHDAA2:0002226 xref: FMA:24140 xref: OG:0001255 xref: OpenCyc:Mx4rvZcKkZwpEbGdrcN5Y29ycA xref: XAO:0003062 is_a: UBERON:0004381 ! implied link automatically realized ! skeleton of limb relationship: part_of UBERON:0002103 intersection_of: UBERON:0000075 ! subdivision of skeletal system intersection_of: part_of UBERON:0002103 ! hindlimb relationship: has_part UBERON:0002428 ! limb bone relationship: part_of UBERON:0002103 {source="FMA"} ! hindlimb [Term] id: UBERON:0001442 name: skeleton of hand alt_id: UBERON:FMA_24159-MA_0000619 def: "A subdivision of skeletal system that is part of a hand [Obol]." [OBOL:automatic] comment: TODO: check skeleton vs part of skeleton synonym: "arm autopod subdivision of skeleton" EXACT [OBOL:automatic] synonym: "arm distal free limb segment subdivision of skeleton" EXACT [OBOL:automatic] synonym: "autopod of arm subdivision of skeleton" EXACT [OBOL:automatic] synonym: "autopod of brachial region subdivision of skeleton" EXACT [OBOL:automatic] synonym: "autopod of proximal segment of free upper limb subdivision of skeleton" EXACT [OBOL:automatic] synonym: "bones of hand" EXACT [] synonym: "brachial region autopod subdivision of skeleton" EXACT [OBOL:automatic] synonym: "brachial region distal free limb segment subdivision of skeleton" EXACT [OBOL:automatic] synonym: "distal free limb segment of arm subdivision of skeleton" EXACT [OBOL:automatic] synonym: "distal free limb segment of brachial region subdivision of skeleton" EXACT [OBOL:automatic] synonym: "distal free limb segment of proximal segment of free upper limb subdivision of skeleton" EXACT [OBOL:automatic] synonym: "hand skeleton" EXACT [] synonym: "hand subdivision of skeleton" EXACT [OBOL:automatic] synonym: "ossa manus" EXACT [FMA:24159, FMA:TA] synonym: "proximal segment of free upper limb autopod subdivision of skeleton" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb distal free limb segment subdivision of skeleton" EXACT [OBOL:automatic] synonym: "set of bones of hand" EXACT [] synonym: "subdivision of skeleton of arm autopod" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of arm distal free limb segment" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of autopod of arm" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of autopod of brachial region" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of autopod of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of brachial region autopod" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of brachial region distal free limb segment" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of distal free limb segment of arm" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of distal free limb segment of brachial region" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of distal free limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of hand" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of proximal segment of free upper limb autopod" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of proximal segment of free upper limb distal free limb segment" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of terminal segment of free upper limb" EXACT [OBOL:automatic] synonym: "terminal segment of free upper limb subdivision of skeleton" EXACT [OBOL:automatic] xref: FMA:24159 xref: OpenCyc:Mx4rvdHPJJwpEbGdrcN5Y29ycA is_a: UBERON:0001440 ! implied link automatically realized ! forelimb skeleton is_a: UBERON:0006717 ! implied link automatically realized ! skeleton of autopod relationship: part_of UBERON:0002398 intersection_of: UBERON:0000075 ! subdivision of skeletal system intersection_of: part_of UBERON:0002398 ! hand relationship: part_of UBERON:0001440 ! forelimb skeleton relationship: part_of UBERON:0002398 ! hand [Term] id: UBERON:0001443 name: chest alt_id: UBERON:FMA_24216-MA_0000031 def: "Subdivision of trunk proper, which is demarcated from the neck by the plane of the superior thoracic aperture and from the abdomen internally by the inferior surface of the diaphragm and externally by the costal margin and associated with the thoracic vertebral column and ribcage and from the back of the thorax by the external surface of the posterolateral part of the rib cage, the anterior surface of the thoracic vertebral column and the posterior axillary lines; together with the abdomen and the perineum, it constitutes the trunk proper[FMA]." [FMA:9576, Wikipedia:Chest] comment: editor note - FMA:24216 present in FMA1, but gone in subsequent versions subset: uberon_slim synonym: "anterior chest" EXACT [FMA:24816] synonym: "anterior thoracic region" EXACT [] synonym: "anterolateral part of thorax" EXACT [] synonym: "front of chest" EXACT [FMA:24816] synonym: "front of thorax" EXACT [] synonym: "pectus" EXACT [FMA:24816, FMA:TA] synonym: "thorax" RELATED [FMA:9576] xref: BTO:0001368 xref: EFO:0000965 xref: EV:0100010 xref: FMA:9576 xref: GAID:91 xref: galen:Chest xref: galen:Thorax xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Chest.jpg/200px-Chest.jpg xref: MA:0000031 xref: MAT:0000295 xref: MESH:A.01.911 xref: MIAA:0000295 xref: ncithesaurus:Chest xref: ncithesaurus:Thorax xref: OpenCyc:Mx4rvVikFZwpEbGdrcN5Y29ycA is_a: UBERON:0009569 {source="FMA"} ! subdivision of trunk relationship: part_of UBERON:0000915 {source="FMA", source="MA"} ! thoracic segment of trunk relationship: spatially_disjoint_from UBERON:0000916 ! abdomen [Term] id: UBERON:0001444 name: subdivision of head alt_id: UBERON:FMA_24218-XAO_0000040 comment: This class was created automatically from a combination of ontologies synonym: "head region" EXACT [] synonym: "head subdivision" EXACT [] synonym: "region of head" EXACT [] xref: FMA:24218 xref: SCTID:123852005 xref: XAO:0000040 is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0000033 ! head [Term] id: UBERON:0001445 name: skeleton of foot alt_id: UBERON:FMA_24222-MA_0000643 def: "A subdivision of skeletal system that is part of a foot [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "autopod of hind limb subdivision of skeleton" EXACT [OBOL:automatic] synonym: "autopod of hindlimb subdivision of skeleton" EXACT [OBOL:automatic] synonym: "autopod of inferior member subdivision of skeleton" EXACT [OBOL:automatic] synonym: "autopod of lower extremity subdivision of skeleton" EXACT [OBOL:automatic] synonym: "distal free limb segment of hind limb subdivision of skeleton" EXACT [OBOL:automatic] synonym: "distal free limb segment of hindlimb subdivision of skeleton" EXACT [OBOL:automatic] synonym: "distal free limb segment of inferior member subdivision of skeleton" EXACT [OBOL:automatic] synonym: "distal free limb segment of lower extremity subdivision of skeleton" EXACT [OBOL:automatic] synonym: "foot skeleton" EXACT [] synonym: "foot subdivision of skeleton" EXACT [OBOL:automatic] synonym: "hind limb autopod subdivision of skeleton" EXACT [OBOL:automatic] synonym: "hind limb distal free limb segment subdivision of skeleton" EXACT [OBOL:automatic] synonym: "hindlimb autopod subdivision of skeleton" EXACT [OBOL:automatic] synonym: "hindlimb distal free limb segment subdivision of skeleton" EXACT [OBOL:automatic] synonym: "inferior member autopod subdivision of skeleton" EXACT [OBOL:automatic] synonym: "inferior member distal free limb segment subdivision of skeleton" EXACT [OBOL:automatic] synonym: "lower extremity autopod subdivision of skeleton" EXACT [OBOL:automatic] synonym: "lower extremity distal free limb segment subdivision of skeleton" EXACT [OBOL:automatic] synonym: "set of bones of foot" EXACT [] synonym: "subdivision of skeleton of autopod of hind limb" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of autopod of hindlimb" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of autopod of inferior member" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of autopod of lower extremity" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of distal free limb segment of hind limb" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of distal free limb segment of hindlimb" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of distal free limb segment of inferior member" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of distal free limb segment of lower extremity" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of foot" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of hind limb autopod" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of hind limb distal free limb segment" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of hindlimb autopod" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of hindlimb distal free limb segment" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of inferior member autopod" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of inferior member distal free limb segment" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of lower extremity autopod" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of lower extremity distal free limb segment" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of terminal segment of free lower limb" EXACT [OBOL:automatic] synonym: "terminal segment of free lower limb subdivision of skeleton" EXACT [OBOL:automatic] xref: EHDAA2:0002228 xref: FMA:24222 xref: ncithesaurus:Foot_Bone xref: OpenCyc:Mx4rv5ridZwpEbGdrcN5Y29ycA is_a: UBERON:0001441 ! implied link automatically realized ! hindlimb skeleton is_a: UBERON:0006717 ! implied link automatically realized ! skeleton of autopod relationship: part_of UBERON:0002387 intersection_of: UBERON:0000075 ! subdivision of skeletal system intersection_of: part_of UBERON:0002387 ! foot relationship: part_of UBERON:0002387 ! foot [Term] id: UBERON:0001446 name: fibula alt_id: UBERON:FMA_24479-MA_0001360 def: "The fibula or calf bone is a bone located on the lateral side of the tibia, with which it is connected above and below. It is the smaller of the two bones, and, in proportion to its length, the most slender of all the long bones. Its upper extremity is small, placed toward the back of the head of the tibia, below the level of the knee-joint, and excluded from the formation of this joint. Its lower extremity inclines a little forward, so as to be on a plane anterior to that of the upper end; it projects below the tibia, and forms the lateral part of the ankle-joint. [WP,unvetted]." [Wikipedia:Fibula] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: AAO:0000891 xref: BTO:0002346 xref: EFO:0003052 xref: EMAPA:18512 xref: EMAPA:19141 xref: FMA:24479 xref: GAID:202 xref: galen:Fibula xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Illu_lower_extremity.jpg/200px-Illu_lower_extremity.jpg xref: MA:0001360 xref: MESH:A.02.835.232.500.321 xref: ncithesaurus:Fibula xref: SCTID:302529003 is_a: UBERON:0002495 ! long bone is_a: UBERON:0003608 ! implied link automatically realized ! hindlimb long bone is_a: UBERON:0004251 ! implied link automatically realized ! lower leg bone relationship: part_of UBERON:0001441 ! hindlimb skeleton relationship: part_of UBERON:0003823 ! hindlimb zeugopod [Term] id: UBERON:0001447 name: tarsal bone alt_id: UBERON:FMA_24491-MA_0000297 def: "In humans, cluster of bones in the foot between the tibia and fibula and the metatarsus. The bones of the tarsus do not belong to individual toes, whereas those of the metatarsus do. The joint between the tibia and fibula and the tarsus is referred to as the ankle joint[WP]." [Wikipedia:Ankle_bone] comment: In primitive tetrapods, such as Trematops, the tarsus consists of three rows of bones. There are three proximal tarsals, the tibiale, intermedium, and fibulare, named for their points of articulation with the bones of the lower limb. These are followed by a second row of four bones, referred to as the centralia (singular: centrale), and then a row of five distal tarsals, each articulating with a single metatarsal. In the great majority of tetrapods, including all of those alive today, this simple pattern is modified by the loss and fusion of various of the bones.[3] In reptiles and mammals, there are normally just two proximal tarsals, the calcaneus (equivalent to the amphibian fibulare) and the talus (probably derived from a fusion of multiple bones). In mammals, including humans, the talus forms a hinge joint with the tibia, a feature especially well developed in the artiodactyls. The calcaneus is also modified, forming a heel for the attachment of the Achilles tendon. Neither of these adaptations is found in reptiles, which have a relatively simple structure to both bones.[3] The fifth distal tarsal disappears relatively early in evolution, with the remainder becoming the cuneiform and cuboid bones. Reptiles usually retain two centralia, while mammals typically have only one (the navicular).[3] In birds, the tarsus has disappeared, with the proximal tarsals having fused with the tibia, the centralia having disappeared, and the distal bones having fused with the metatarsals to form a single tarsometatarsus bone, effectively giving the leg a third segment[Wikipedia:Tarsus_(skeleton)] subset: uberon_slim synonym: "ankle bone" EXACT [] synonym: "bone of ankle" EXACT [] synonym: "bone of tarsus" EXACT [] synonym: "bony tarsus" RELATED [BTO:0002343] synonym: "hind mesopodium" RELATED [AAO:0000220] synonym: "ossa tarsalia" EXACT PLURAL [FMA:71339, FMA:TA] synonym: "ossa tarsi" EXACT PLURAL [FMA:71339, FMA:TA] synonym: "tarsal" RELATED [BTO:0002343] synonym: "tarsus osseus" RELATED [BTO:0002343] xref: AAO:0000220 xref: BTO:0002343 xref: EMAPA:25072 xref: FMA:24491 xref: GAID:194 xref: galen:TarsalBone xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bf/Ankle_en.svg/200px-Ankle_en.svg.png xref: MA:0000297 xref: MESH:A.02.835.232.300.710 xref: ncithesaurus:Tarsal_Bone xref: SCTID:108372004 is_a: UBERON:0003656 ! mesopodium bone is_a: UBERON:0005899 ! implied link automatically realized ! foot bone relationship: part_of UBERON:0004454 intersection_of: UBERON:0001474 ! bone intersection_of: part_of UBERON:0004454 ! tarsus [Term] id: UBERON:0001448 name: metatarsal bone alt_id: UBERON:FMA_24492-MA_0000303 def: "The metatarsus or metatarsal bones are a group of five long bones in the foot located between the tarsal bones of the hind- and mid-foot and the phalanges of the toes. Lacking individual names, the metatarsal bones are numbered from the medial side (side of big toe): the first, second, third, fourth, and fifth metatarsal. The metatarsals are analogous to the metacarpal bones of the hand. [WP,unvetted]." [Wikipedia:Metatarsal_bone] subset: uberon_slim synonym: "metatarsal" EXACT [] synonym: "ossa metatarsalia" RELATED [BTO:0002347] synonym: "ossa metatarsi" RELATED [BTO:0002347] xref: BTO:0002347 xref: FMA:24492 xref: GAID:193 xref: galen:Metatarsal xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Gray291.png/200px-Gray291.png xref: MA:0000303 xref: MESH:A.02.835.232.300.492 xref: ncithesaurus:Metatarsal_Bone xref: SCTID:302532000 is_a: UBERON:0001445 ! skeleton of foot is_a: UBERON:0002495 ! long bone is_a: UBERON:0003608 ! implied link automatically realized ! hindlimb long bone is_a: UBERON:0003821 ! metacarpal/metatarsal bone is_a: UBERON:0005899 ! implied link automatically realized ! foot bone relationship: part_of UBERON:0000983 intersection_of: UBERON:0003821 ! metacarpal/metatarsal bone intersection_of: part_of UBERON:0000983 ! metatarsus [Term] id: UBERON:0001449 name: phalanx of toe alt_id: UBERON:0004272 alt_id: UBERON:FMA_24493-MA_0000305 def: "A phalanx that is part of a hindlimb[Obol]." [OBOL:automatic] synonym: "digitus pedis phalanx" EXACT [OBOL:automatic] synonym: "foot digit phalanx" EXACT [OBOL:automatic] synonym: "foot phalanx" EXACT [MA:0000305] synonym: "phalanges of hind digit" RELATED PLURAL [AAO:0000930] synonym: "phalanx of digit of foot" EXACT [OBOL:automatic] synonym: "phalanx of digitus pedis" EXACT [OBOL:automatic] synonym: "phalanx of foot digit" EXACT [OBOL:automatic] synonym: "phalanx of hind digit" EXACT [] synonym: "toe phalanx" EXACT [OBOL:automatic] xref: AAO:0000930 xref: FMA:24493 xref: MA:0000305 xref: ncithesaurus:Foot_Phalanx xref: ncithesaurus:Phalanx_of_the_Foot xref: SCTID:302533005 is_a: UBERON:0003221 ! implied link automatically realized ! phalanx is_a: UBERON:0003608 ! implied link automatically realized ! hindlimb long bone is_a: UBERON:0004248 ! implied link automatically realized ! foot digit bone relationship: part_of UBERON:0002387 intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0002387 ! foot relationship: part_of UBERON:0001466 ! foot digit [Term] id: UBERON:0001450 name: calcaneus alt_id: UBERON:FMA_24496-MA_0001348 def: "In humans, the calcaneus or heel bone is a bone of the tarsus of the foot which constitute the heel. In some other animals, it is the point of the hock. [WP,unvetted]." [Wikipedia:Calcaneus] comment: AAO: One of two element that constitute the basal row of tarsals. The fibulare constitutes the preaxial element. In salamanders this element is aproximatelly rounded, whereas in anurans it is an elongate, cylindrical bone with the proximal and distal heads fused to the heads of the tibiale.[AAO:0000913] subset: uberon_slim synonym: "astragalus" RELATED HOMOLOGY [AAO:0000913] synonym: "calcaneum" EXACT [] synonym: "fibulare" RELATED [] synonym: "fibulare" RELATED HOMOLOGY [AAO:0000913] synonym: "os calcis" EXACT [] xref: AAO:0000913 xref: BTO:0002355 xref: EMAPA:18501 xref: EMAPA:19134 xref: FMA:24496 xref: galen:Calcaneum xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a9/Subtalar_Joint.PNG/200px-Subtalar_Joint.PNG xref: MA:0001348 xref: MESH:A.02.835.232.300.710.300 xref: ncithesaurus:Calcaneum xref: SCTID:182099002 is_a: UBERON:0001447 ! tarsal bone [Term] id: UBERON:0001451 name: navicular bone of foot alt_id: UBERON:FMA_24499-MA_0001349 def: "The navicular bone is one of the tarsal bones, found in the foot. It is located on the medial side of the foot, and articulates proximally with the talus, distally with the three cuneiform bones, and occasionally laterally with the cuboid[WP]." [Wikipedia:Navicular_bone] comment: todo - check AAO subset: uberon_slim synonym: "central tarsal bone" RELATED [] synonym: "centrale" RELATED [] synonym: "navicular" EXACT [] synonym: "navicular of foot" EXACT [] synonym: "os naviculare" RELATED [BTO:0002356] synonym: "os naviculare" EXACT [FMA:24499, FMA:TA] synonym: "os naviculare pedis" EXACT [BTO:0002356] xref: AAO:0000924 xref: BTO:0002356 xref: FMA:24499 xref: galen:Navicular xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Gray276.png/200px-Gray276.png xref: MA:0001349 xref: ncithesaurus:Centralization xref: OpenCyc:Mx4rv67esJwpEbGdrcN5Y29ycA xref: SCTID:182100005 is_a: UBERON:0001447 ! tarsal bone [Term] id: UBERON:0001452 name: medial cuneiform bone alt_id: UBERON:FMA_24518-MA_0001352 def: "The medial cuneiform (also known as first cuneiform) is the largest of the cuneiforms. It is situated at the medial side of the foot, anterior to the navicular and posterior to the base of the first metatarsal. It articulates with four bones: the navicular, second cuneiform, and first and second metatarsals. [WP,unvetted]." [Wikipedia:Medial_cuneiform_bone] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "first cuneiform bone" EXACT [] synonym: "foot distal carpal bone 1" RELATED [] synonym: "medial cuneiform" EXACT [] synonym: "os cuneiforme mediale" RELATED [BTO:0002360] synonym: "os cuneiforme primum" RELATED [BTO:0002360] synonym: "ossa cuneiforme mediale" RELATED [BTO:0002360] xref: BTO:0002360 xref: FMA:24518 xref: galen:MedialCuneiform xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Gray290.png/200px-Gray290.png xref: MA:0001352 xref: OpenCyc:Mx4rvYtfH5wpEbGdrcN5Y29ycA xref: SCTID:182116007 is_a: UBERON:0001447 ! tarsal bone [Term] id: UBERON:0001453 name: intermediate cuneiform bone alt_id: UBERON:FMA_24519-MA_0001353 def: "The intermediate cuneiform (also known as second cuneiform / middle cuneiform) is shaped like a wedge, the thin end pointing downwards. It is situated between the other two cuneiforms (the medial and lateral cuneiforms), and articulates with the navicular posteriorly, the second metatarsal anteriorly and with the other cuneiforms on either side. [WP,unvetted]." [Wikipedia:Intermediate_cuneiform_bone] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "foot distal carpal bone 2" RELATED [] synonym: "intermediate cuneiform" EXACT [] synonym: "middle cuneiform" EXACT [] synonym: "os cuneiforme intermedium" RELATED [BTO:0002359] synonym: "os cuneiforme secundum" RELATED [BTO:0002359] synonym: "second cuneiform bone" EXACT [] synonym: "second cuneiform bone of foot" EXACT [] xref: BTO:0002359 xref: FMA:24519 xref: galen:IntermediateCuneiform xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Gray291.png/200px-Gray291.png xref: MA:0001353 xref: SCTID:179512006 is_a: UBERON:0001447 ! tarsal bone [Term] id: UBERON:0001454 name: lateral cuneiform bone alt_id: UBERON:FMA_24520-MA_0001354 def: "The lateral cuneiform (also known as third cuneiform / external cuneiform) intermediate in size between the other two cuneiform bones, is also wedge-shaped, the base being uppermost. It occupies the center of the front row of the tarsal bones, between the second cuneiform medially, the cuboid laterally, the navicular posteriorly and the third metatarsal in front. [WP,unvetted]." [Wikipedia:Lateral_cuneiform_bone] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "foor distal carpal bone 3" RELATED [] synonym: "lateral cuneiform" EXACT [] synonym: "os cuneiforme laterale" RELATED [BTO:0002358] synonym: "os cuneiforme tertium" RELATED [BTO:0002358] synonym: "ossa cuneiforme laterale" RELATED [BTO:0002358] synonym: "third cuneiform bone" EXACT [] xref: BTO:0002358 xref: FMA:24520 xref: galen:LateralCuneiform xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Gray291.png/200px-Gray291.png xref: MA:0001354 xref: OpenCyc:Mx4rvoLPu5wpEbGdrcN5Y29ycA xref: SCTID:182117003 is_a: UBERON:0001447 ! tarsal bone [Term] id: UBERON:0001455 name: cuboid bone alt_id: UBERON:FMA_24527-MA_0001355 def: "In the human body, the cuboid bone is one of the seven tarsal bones of the foot. [WP,unvetted]." [Wikipedia:Cuboid_bone] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "cuboid" EXACT [] synonym: "foot distal carpal bone 4 and 5" RELATED [] synonym: "os cuboideum" RELATED [BTO:0002357] xref: BTO:0002357 xref: FMA:24527 xref: galen:Cuboid xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/18/Gray274.png/200px-Gray274.png xref: MA:0001355 xref: ncithesaurus:Cuboid_Bone xref: SCTID:182101009 is_a: UBERON:0001447 ! tarsal bone [Term] id: UBERON:0001456 name: face alt_id: UBERON:FMA_24728-MA_0002473 def: "Subdivision of head which consists of the viscerocranium and all layers superficial to it[FMA]." [FMA:24728, Wikipedia:Face] comment: The face develops from outward growth of tissue located rostral to the cranium & pharynx. The lower jaw and most of the upper jaw are formed by growth of the first pharyngeal (branchial) arch. The upper incisor region and the nose and forehead (frontal region) are formed from tissue located rostral to the neural tube (frontonasal prominence)[vanat.cvm.umn.edu/TFFlectPDFs/LectFaceDevelop.pdf] subset: uberon_slim synonym: "visage" RELATED [BTO:0003369] xref: BTO:0003369 xref: FMA:24728 xref: GAID:64 xref: galen:Face xref: HAO:0000316 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/55/Mona_Lisa_headcrop.jpg/200px-Mona_Lisa_headcrop.jpg xref: MA:0002473 xref: MESH:A.01.456.505 xref: ncithesaurus:Face xref: OpenCyc:Mx4rvVi5GZwpEbGdrcN5Y29ycA xref: SCTID:302549007 is_a: UBERON:0001444 ! subdivision of head [Term] id: UBERON:0001457 name: skin of eyelid alt_id: UBERON:FMA_24760-MA_0001256 def: "A zone of skin that is part of a eyelid [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "blepharon zone of skin" EXACT [OBOL:automatic] synonym: "eyelid skin" EXACT [] synonym: "eyelid zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of blepharon" EXACT [OBOL:automatic] synonym: "zone of skin of eyelid" EXACT [OBOL:automatic] xref: FMA:24760 xref: MA:0001256 xref: ncithesaurus:Eyelid_Skin xref: SCTID:245947005 is_a: UBERON:0001084 ! implied link automatically realized ! skin of head relationship: part_of UBERON:0001711 intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0001711 ! eyelid [Term] id: UBERON:0001458 name: skin of lip alt_id: UBERON:FMA_24764-MA_0001579 def: "A zone of skin that is part of a lip [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "lip skin" EXACT [] synonym: "lip zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of lip" EXACT [OBOL:automatic] xref: FMA:24764 xref: MA:0001579 xref: ncithesaurus:Skin_of_the_Lip xref: SCTID:244092005 is_a: UBERON:0000014 ! zone of skin is_a: UBERON:0001084 ! implied link automatically realized ! skin of head is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001833 intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0001833 ! lip [Term] id: UBERON:0001459 name: skin of external ear alt_id: UBERON:FMA_24775-MA_0001233 def: "A zone of skin that is part of a external ear [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "auricular region of head zone of skin" EXACT [OBOL:automatic] synonym: "auricular region zone of skin" EXACT [OBOL:automatic] synonym: "ear skin" EXACT [] synonym: "external ear skin" EXACT [] synonym: "external ear zone of skin" EXACT [OBOL:automatic] synonym: "outer ear zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of auricular region" EXACT [OBOL:automatic] synonym: "zone of skin of auricular region of head" EXACT [OBOL:automatic] synonym: "zone of skin of external ear" EXACT [OBOL:automatic] synonym: "zone of skin of outer ear" EXACT [OBOL:automatic] xref: FMA:24775 xref: MA:0001233 xref: ncithesaurus:Ear_Skin xref: SCTID:244073008 is_a: UBERON:0000014 ! zone of skin is_a: UBERON:0001084 ! implied link automatically realized ! skin of head relationship: part_of UBERON:0001691 intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0001691 ! external ear relationship: part_of UBERON:0001757 ! pinna [Term] id: UBERON:0001460 name: arm alt_id: UBERON:FMA_24890-MA_0000033 def: "The part of the forelimb extending from the shoulder to the autopod[cjm]." [Wikipedia:Arm] comment: This class refers to the combination of the stylopod and zeugopod of a forelimb. Sometimes (cf FMA), 'arm' denotes the stylopod only; sometimes (cf MA), 'arm' denotes the part of the forelimb covering both (i.e. shoulder to hand). Also note distinction between arm and forelimb: hand is part of forelimb, but not part of arm. Editor note: currently declared as overlapping hand, as AOs disagree over whether some wrist parts are in the arm or hand subset: uberon_slim synonym: "upper extremity" RELATED [MESH:A.01.378.800] xref: BTO:0001435 xref: EFO:0001410 xref: EHDAA:4164 xref: EHDAA:6210 xref: EHDAA:8275 xref: EHDAA2:0000140 xref: EMAPA:17413 xref: GAID:52 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/Upperarm.jpg/200px-Upperarm.jpg xref: MA:0000033 xref: MESH:A.01.378.800 xref: MESH:A.01.378.800.075 xref: OG:0000339 xref: OpenCyc:Mx4rvVjp5ZwpEbGdrcN5Y29ycA is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0006058 ! multi-limb segment region relationship: overlaps UBERON:0002398 ! hand relationship: part_of UBERON:0002102 ! forelimb [Term] id: UBERON:0001461 name: elbow alt_id: UBERON:FMA_24901-MA_0000036 def: "The elbow is the region surrounding the elbow-joint—the ginglymus or hinge joint in the middle of the arm. Three bones form the elbow joint: the humerus of the upper arm, and the paired radius and ulna of the forearm. The bony prominence at the very tip of the elbow is the olecranon process of the ulna, and the inner aspect of the elbow is called the antecubital fossa. [WP,unvetted]." [Wikipedia:Elbow] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "cubital region" EXACT [] xref: EFO:0003069 xref: EHDAA:4166 xref: EHDAA:6212 xref: EHDAA2:0000429 xref: EMAPA:17414 xref: FMA:24901 xref: GAID:54 xref: galen:Elbow xref: MA:0000036 xref: MESH:A.01.378.800.420 xref: OG:0000340 xref: OpenCyc:Mx4rvVjjNZwpEbGdrcN5Y29ycA is_a: UBERON:0002529 ! limb segment is_a: UBERON:0008785 ! implied link automatically realized ! upper limb segment relationship: part_of UBERON:0001460 ! arm [Term] id: UBERON:0001462 name: wrist alt_id: UBERON:FMA_24922-MA_0000039 def: "The anatomical region surrounding the carpus including the distal parts of the bones of the forearm and the proximal parts of the metacarpus or five metacarpal bones and the series of joints between these bones, thus referred to as wrist joints. This region also include the carpal tunnel, the anatomical snuff box, the flexor retinaculum, and the extensor retinaculum[WP,unvetted]." [Wikipedia:Wrist] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "carpal region" EXACT [] synonym: "regio carpalis" EXACT [FMA:24922, FMA:TA] xref: EHDAA:5196 xref: EHDAA2:0000218 xref: FMA:24922 xref: GAID:59 xref: galen:Wrist xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4a/Human_wrist.png/200px-Human_wrist.png xref: MA:0000039 xref: MESH:A.01.378.800.667.715 xref: OpenCyc:Mx4rvVjncpwpEbGdrcN5Y29ycA is_a: UBERON:0002529 ! limb segment is_a: UBERON:0008785 ! implied link automatically realized ! upper limb segment relationship: part_of UBERON:0002102 {source="MA"} ! forelimb [Term] id: UBERON:0001463 name: hand digit 1 alt_id: UBERON:FMA_24938-MA_0000454 def: "1st (lateral-most) digit of the hand in mouse and human[Wikipedia]." [Wikipedia:Thumb] comment: This class represents all instances of the first digit of the hand in human and mouse, and all homologues of this digit in other vertebrates. See http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553264/ subset: uberon_slim synonym: "digit 1 of fore-paw" EXACT [EMAPA:17429] synonym: "digitus primus" EXACT [] synonym: "finger 1" EXACT [EHDAA2:0000511] synonym: "first digit of hand" EXACT [] synonym: "pollex" EXACT [] synonym: "pollex; digitus primus [I]" EXACT [] synonym: "thumb" EXACT [] xref: EHDAA2:0000511 xref: EMAPA:17429 xref: FMA:24938 xref: GAID:58 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Thumb-up.jpg/200px-Thumb-up.jpg xref: MA:0000454 xref: MESH:A.01.378.800.667.430.705 xref: ncithesaurus:Hand_Digit_1 xref: OpenCyc:Mx4rvVjVbpwpEbGdrcN5Y29ycA xref: SCTID:302540006 is_a: UBERON:0002389 ! hand digit is_a: UBERON:0006048 ! implied link automatically realized ! digit 1 relationship: part_of UBERON:0002398 intersection_of: UBERON:0006048 ! digit 1 intersection_of: part_of UBERON:0002398 ! hand [Term] id: UBERON:0001464 name: hip alt_id: UBERON:FMA_24964-MA_0000045 def: "The hip region is located lateral to the gluteal region (i.e. the buttock), inferior to the iliac crest, and overlying the greater trochanter of the thigh bone. In adults, three of the bones of the pelvis have fused into the hip bone which forms part of the hip region. The hip joint, scientifically referred to as the acetabulofemoral joint (art. coxae), is the joint between the femur and acetabulum of the pelvis and its primary function is to support the weight of the body in both static (e.g. standing) and dynamic (e.g. walking or running) postures. [WP,modified]." [Wikipedia:Hip] comment: in BTO this is part of the abdomen - this creates an inconsistency if limb and abdomen are spatially disjoint subset: uberon_slim synonym: "hip region" EXACT [FMA:24964] synonym: "regio coxae" EXACT [FMA:24964] xref: BTO:0001457 xref: EFO:0001929 xref: EHDAA:5153 xref: EHDAA:6178 xref: EHDAA2:0000783 xref: EMAPA:17490 xref: FMA:24964 xref: GAID:47 xref: galen:Hip xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9f/Hip.jpg/200px-Hip.jpg xref: MA:0000045 xref: MESH:A.01.378.610.400 xref: ncithesaurus:Hip xref: OG:0000346 xref: OpenCyc:Mx4rvVjhy5wpEbGdrcN5Y29ycA xref: SCTID:302543008 is_a: UBERON:0002529 ! limb segment relationship: part_of UBERON:0001271 {source="FMA"} ! pelvic girdle [Term] id: UBERON:0001465 name: knee alt_id: UBERON:FMA_24974-MA_0000046 def: "The knee joint joins the thigh with the leg and consists of two articulations: one between the femur and tibia, and one between the femur and patella. It is the largest and most complicated joint in the human body. The knee is a mobile trocho-ginglymus (i.e. a pivotal hinge joint), which permits flexion and extension as well as a slight medial and lateral rotation. Since in humans the knee supports nearly the whole weight of the body, it is the joint most vulnerable both to acute injury and the development of osteoarthritis. [WP,unvetted]." [Wikipedia:Knee] subset: uberon_slim xref: BTO:0003595 xref: EFO:0001957 xref: EHDAA:5159 xref: EHDAA:6184 xref: EHDAA2:0000895 xref: EMAPA:17493 xref: FMA:24974 xref: GAID:48 xref: galen:Knee xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8d/Male_Knee_by_David_Shankbone.jpg/200px-Male_Knee_by_David_Shankbone.jpg xref: MA:0000046 xref: MESH:A.01.378.610.450 xref: OG:0000347 xref: OpenCyc:Mx4rvVjPKZwpEbGdrcN5Y29ycA is_a: UBERON:0002529 ! limb segment is_a: UBERON:0008784 ! implied link automatically realized ! lower limb segment relationship: part_of UBERON:0000978 ! leg [Term] id: UBERON:0001466 name: foot digit alt_id: UBERON:0000027 alt_id: UBERON:FMA_25046-MA_0000048 def: "A digit that is part_of a hindlimb[Obol]." [Wikipedia:Toe] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "digit of foot" EXACT [] synonym: "digit of terminal segment of free lower limb" EXACT [OBOL:automatic] synonym: "digiti pedis" EXACT PLURAL [FMA:70664, FMA:TA] synonym: "digitipedis" RELATED [BTO:0002348] synonym: "digitus pedis" EXACT [] synonym: "hind digit" EXACT [XAO:0003035] synonym: "hind_digit" EXACT [AAO:0000888] synonym: "hindlimb digit" EXACT [] synonym: "toe" EXACT [FMA:25046] xref: AAO:0000888 xref: BTO:0002348 xref: FMA:25046 xref: GAID:44 xref: galen:Toe xref: MA:0000048 xref: ncithesaurus:Toe xref: OpenCyc:Mx4rvVjCHZwpEbGdrcN5Y29ycA xref: SCTID:116667001 xref: XAO:0003035 is_a: UBERON:0002544 ! implied link automatically realized ! digit is_a: UBERON:0005445 ! segment of foot relationship: part_of UBERON:0002387 intersection_of: UBERON:0002544 ! digit intersection_of: part_of UBERON:0002387 ! foot relationship: part_of UBERON:0002387 ! foot [Term] id: UBERON:0001467 name: shoulder alt_id: UBERON:FMA_25202-MA_0000038 def: "In human anatomy, the shoulder joint comprises the part of the body where the humerus attaches to the scapula. The shoulder refers to the group of structures in the region of the joint. It is made up of three bones: the clavicle (collarbone), the scapula (shoulder blade), and the humerus (upper arm bone) as well as associated muscles, ligaments and tendons. The articulations between the bones of the shoulder make up the shoulder joints. There are two kinds of cartilage in the joint. The first type is the white cartilage on the ends of the bones (called articular cartilage) which allows the bones to glide and move on each other. When this type of cartilage starts to wear out (a process called arthritis), the joint becomes painful and stiff. The labrum is a second kind of cartilage in the shoulder which is distinctly different from the articular cartilage. This cartilage is more fibrous or rigid than the cartilage on the ends of the ball and socket. Also, this cartilage is also found only around the socket where it is attached. The shoulder must be flexible for the wide range of motion required in the arms and hands and also strong enough to allow for actions such as lifting, pushing and pulling. The compromise between these two functions results in a large number of shoulder problems not faced by other joints such as the hip. [WP,unvetted]." [Wikipedia:Shoulder] subset: uberon_slim xref: EFO:0003068 xref: EHDAA:4180 xref: EHDAA:6228 xref: EHDAA2:0001834 xref: EMAPA:17421 xref: FMA:25202 xref: GAID:60 xref: galen:Shoulder xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/90/Shoulderjoint.PNG/200px-Shoulderjoint.PNG xref: MA:0000038 xref: MESH:A.01.378.800.750 xref: ncithesaurus:Shoulder xref: OG:0000342 xref: OpenCyc:Mx4rvViCM5wpEbGdrcN5Y29ycA is_a: UBERON:0002529 ! limb segment is_a: UBERON:0008785 ! implied link automatically realized ! upper limb segment relationship: part_of UBERON:0001421 {source="FMA"} ! pectoral girdle relationship: part_of UBERON:0002102 {source="MA"} ! forelimb [Term] id: UBERON:0001468 name: intervertebral symphysis alt_id: UBERON:FMA_25511-MA_0001514 comment: This class was created automatically from a combination of ontologies synonym: "joint of vertebral body" EXACT [] xref: FMA:25511 xref: MA:0001514 xref: SCTID:244512000 is_a: UBERON:0002216 ! symphysis is_a: UBERON:0005174 ! implied link automatically realized ! back organ relationship: part_of UBERON:0001130 ! vertebral column [Term] id: UBERON:0001469 name: sternoclavicular joint alt_id: UBERON:FMA_25883-MA_0001507 def: "The sternoclavicular articulation is a double arthrodial joint composed of two portions separated by an articular disc. The parts entering into its formation are the sternal end of the clavicle, the upper and lateral part of the manubrium sterni, and the cartilage of the first rib, visible from the outside as the suprasternal notch. The articular surface of the clavicle is much larger than that of the sternum, and is invested with a layer of cartilage, which is considerably thicker than that on the latter bone. The ligaments of this joint are: Articular capsule Anterior sternoclavicular ligament Posterior sternoclavicular ligament Interclavicular ligament Costoclavicular ligament Articular disk [WP,unvetted]." [Wikipedia:Sternoclavicular_joint] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: EMAPA:19203 xref: FMA:25883 xref: GAID:270 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3f/Gray325.png/200px-Gray325.png xref: MA:0001507 xref: MESH:A.02.835.583.781 xref: ncithesaurus:Sternoclavicular_Joint xref: OpenCyc:Mx4rv_eLJZwpEbGdrcN5Y29ycA xref: OpenCyc:Mx4rwI-ZZpwpEbGdrcN5Y29ycA xref: SCTID:182165002 is_a: UBERON:0000982 ! skeletal joint [Term] id: UBERON:0001470 name: glenohumeral joint alt_id: UBERON:FMA_25912-MA_0000459 def: "The glenohumeral joint, commonly known as the shoulder joint, is a multiaxial synovial ball and socket joint and involves articulation between the glenoid fossa of the scapula (shoulder blade) and the head of the humerus (upper arm bone). [WP,unvetted]." [Wikipedia:Glenohumeral_joint] comment: in FMA, this is part of the bony pectoral girdle, alongside the skeleton of pectoral girdle subset: uberon_slim synonym: "articulatio humeri" EXACT [FMA:25912, FMA:TA] synonym: "humeral joint" EXACT [FMA:25912] synonym: "joint of shoulder" EXACT [OBOL:automatic] synonym: "shoulder joint" EXACT [MA:0000459] xref: EMAPA:19105 xref: FMA:25912 xref: GAID:269 xref: galen:ShoulderJoint xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a3/Gray327.png/200px-Gray327.png xref: MA:0000459 xref: MESH:A.02.835.583.748 xref: ncithesaurus:Shoulder_Joint xref: OG:0001002 xref: OpenCyc:Mx4rwP32BZwpEbGdrcN5Y29ycA xref: SCTID:182168000 is_a: UBERON:0002217 ! synovial joint is_a: UBERON:0003839 ! implied link automatically realized ! forelimb joint is_a: UBERON:0008114 ! implied link automatically realized ! joint of girdle relationship: part_of UBERON:0001467 intersection_of: UBERON:0000982 ! skeletal joint intersection_of: part_of UBERON:0001467 ! shoulder relationship: part_of UBERON:0001467 {source="FMA"} ! shoulder [Term] id: UBERON:0001471 name: skin of prepuce of penis alt_id: UBERON:FMA_27648-MA_0001744 def: "A zone of skin that is part of a prepuce of penis [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "foreskin of penis" EXACT [] synonym: "foreskin zone of skin" EXACT [OBOL:automatic] synonym: "penile prepuce zone of skin" EXACT [OBOL:automatic] synonym: "penis foreskin" EXACT [] synonym: "prepuce of penis zone of skin" EXACT [OBOL:automatic] synonym: "prepuce zone of skin" EXACT [OBOL:automatic] synonym: "preputial skin" EXACT [] synonym: "zone of skin of foreskin" EXACT [OBOL:automatic] synonym: "zone of skin of penile prepuce" EXACT [OBOL:automatic] synonym: "zone of skin of prepuce" EXACT [OBOL:automatic] synonym: "zone of skin of prepuce of penis" EXACT [OBOL:automatic] xref: EV:0100109 xref: FMA:27648 xref: MA:0001744 xref: OG:0001342 is_a: UBERON:0000014 ! zone of skin is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0001332 intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0001332 ! prepuce of penis [Term] id: UBERON:0001472 name: vaginal venous plexus alt_id: UBERON:FMA_29713-MA_0002257 def: "The vaginal plexuses are placed at the sides of the vagina; they communicate with the uterine, vesical, and hemorrhoidal plexuses, and are drained by the vaginal veins, one on either side, into the hypogastric veins. [WP,unvetted]." [Wikipedia:Vaginal_venous_plexus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "venous vaginal plexus" EXACT [] xref: FMA:29713 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d4/Gray589.png/200px-Gray589.png xref: MA:0002257 xref: SCTID:294653003 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001593 ! venous plexus is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure is_a: UBERON:0006876 ! implied link automatically realized ! vasculature of organ relationship: part_of UBERON:0000996 intersection_of: UBERON:0001593 ! venous plexus intersection_of: part_of UBERON:0000996 ! vagina [Term] id: UBERON:0001473 name: lymphatic vessel alt_id: UBERON:FMA_30315-FMA_5034-MA_0000138-MA_0000139-MIAA_0000197-XAO_0000375-ZFA_0005105 def: "A vessel that contains or conveys lymph, that originates as an interfibrillar or intercellular cleft or space in a tissue or organ, and that if small has no distinct walls or walls composed only of endothelial cells and if large resembles a vein in structure[BTO]." [BTO:0000752, Wikipedia:Lymphatic_vessel] subset: uberon_slim subset: vertebrate_core synonym: "lymph vessel" EXACT [] xref: AAO:0011005 xref: BTO:0000752 xref: EFO:0000873 xref: FMA:30315 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/44/Illu_lymph_capillary.jpg/200px-Illu_lymph_capillary.jpg xref: MA:0000138 xref: MAT:0000443 xref: ncithesaurus:Lymphatic_Vessel xref: OG:0001249 xref: OpenCyc:Mx4rwA1fYZwpEbGdrcN5Y29ycA xref: SCTID:279089004 xref: TAO:0005105 xref: XAO:0000375 is_a: UBERON:0000055 ! vessel disjoint_from: UBERON:0001981 ! blood vessel relationship: has_part UBERON:0002391 ! lymph relationship: part_of UBERON:0004536 ! lymph vasculature relationship: part_of UBERON:0006558 ! lymphatic part of lymphoid system [Term] id: UBERON:0001474 name: bone alt_id: UBERON:FMA_30317-MA_0001459-MIAA_0000299-XAO_0000169-ZFA_0001514 def: "Organ with cavitated organ parts, which primarily consists of compact (cortical) and cancellous bone, which surround bone marrow cavities; together with other bones, cartilages and joints, it constitutes the skeletal system. Examples: femur, sternum, maxilla, vertebra, talus[FMA]" [BTO:0000140, FMA:5018, Wikipedia:Bone, ZFIN:curator] comment: H&W - a vascularized, supporting skeletal tissue, which also can form ectopically outside the skeleton. Bone consists of cells and a mineralized extracellular matrix that is permeated by canals (canaliculi) that contain osteocyte processes (Plate 2). Bone is deposited by bone-forming cells (osteoblasts), which, when they cease dividing, transform into osteocytes. The first bone matrix deposited is unmineralized and is known as osteoid (Plate 3). Subsequently, osteoid is impregnated with hydroxyapatite to form the mineralized tissue we know as bone, a tissue that is modeled, remodeled, and/or removed by mono- or multinucleated osteoclasts (and sometimes by osteocytes) subset: major_organ subset: organ_slim subset: uberon_slim subset: vertebrate_core synonym: "bone organ" EXACT [] xref: AAO:0000047 xref: AEO:0000082 xref: BTO:0000140 xref: EFO:0000298 xref: EHDAA2:0003082 xref: ENVO:00002039 xref: EV:0100140 xref: FMA:30317 xref: FMA:5018 xref: GAID:92 xref: galen:Bone xref: MA:0001459 xref: MAT:0000299 xref: MIAA:0000299 xref: ncithesaurus:Bone xref: OG:0001190 xref: OpenCyc:Mx4rvViDlpwpEbGdrcN5Y29ycA xref: OpenCyc:Mx4rvVkCG5wpEbGdrcN5Y29ycA xref: SCTID:272673000 xref: TAO:0001514 xref: XAO:0000169 xref: ZFA:0001514 is_a: UBERON:0004765 ! skeletal element disjoint_from: UBERON:0001630 ! muscle organ relationship: part_of UBERON:0001434 ! skeletal system relationship: spatially_disjoint_from UBERON:0001630 ! muscle organ relationship: spatially_disjoint_from UBERON:0002385 ! muscle tissue [Term] id: UBERON:0001475 name: ligament alt_id: UBERON:FMA_30319-FMA_76821-MA_0000113-MIAA_0000113 comment: made obsolete as it incorrectly grouped classes xref: FMA:30319 is_obsolete: true consider: UBERON:0000211 consider: UBERON:0002360 [Term] id: UBERON:0001476 name: deltoid alt_id: UBERON:FMA_32521-MA_0002286 def: "Intrinsic muscle of shoulder which attaches to the spine of scapula, clavicle and humerus.[FMA]" [FMA:FMA, Wikipedia:Deltoid_muscle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "deltoid muscle" RELATED [Wikipedia:Deltoid_muscle] synonym: "deltoideus" RELATED [Wikipedia:Deltoid_muscle] synonym: "deltoideus muscle" RELATED [Wikipedia:Deltoid_muscle] xref: EFO:0001412 xref: EHDAA2:0000339 xref: EMAPA:18177 xref: FMA:32521 xref: MA:0002286 xref: ncithesaurus:Deltoid xref: OG:0000846 xref: OpenCyc:Mx4rvVjdc5wpEbGdrcN5Y29ycA is_a: UBERON:0001482 ! muscle of shoulder [Term] id: UBERON:0001477 name: infraspinatus muscle alt_id: UBERON:FMA_32546-MA_0002323 def: "The Infraspinatus muscle is a thick triangular muscle, which occupies the chief part of the infraspinatous fossa. The infraspinatus is a muscle of the rotator cuff. [WP,unvetted]." [Wikipedia:Infraspinatus_muscle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "infraspinatus" EXACT [] xref: EHDAA:8305 xref: EHDAA2:0000826 xref: EMAPA:18526 xref: FMA:32546 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/99/Arm_muscles_back_numbers.png/200px-Arm_muscles_back_numbers.png xref: MA:0002323 xref: ncithesaurus:Infraspinatus xref: OG:0000921 xref: OpenCyc:Mx4rwVT4_ZwpEbGdrcN5Y29ycA xref: SCTID:277439009 is_a: UBERON:0001482 ! muscle of shoulder [Term] id: UBERON:0001478 name: teres major alt_id: UBERON:FMA_32549-MA_0002392 def: "Teres major is a muscle of the upper limb and one of six scapulohumeral muscles. It is a thick but somewhat flattened muscle. [WP,unvetted]." [Wikipedia:Teres_major] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "teres major muscle" EXACT [] xref: EHDAA:8321 xref: EHDAA2:0002004 xref: EMAPA:19069 xref: EMAPA:19110 xref: FMA:32549 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/99/Arm_muscles_back_numbers.png/200px-Arm_muscles_back_numbers.png xref: MA:0002392 xref: ncithesaurus:Teres_Major_Muscle xref: OG:0000750 xref: OpenCyc:Mx4rwJZqBJwpEbGdrcN5Y29ycA xref: SCTID:277444002 is_a: UBERON:0001482 ! muscle of shoulder [Term] id: UBERON:0001479 name: sesamoid bone alt_id: UBERON:FMA_32672-MA_0001375 def: "a bone embedded within a tendon. Sesamoids are found in locations where a tendon passes over a joint, such as the hand, knee, and foot. Functionally, they act to protect the tendon and to increase its mechanical effect. The presence of the sesamoid bone holds the tendon slightly farther away from the center of the joint and thus increases its moment arm. Sesamoid bones also prevent the tendon from flattening into the joint as tension increases and therefore also maintain a more consistent moment arm through a variety of possible tendon loads. This differs from menisci, which are made of cartilage and rather act to disperse the weight of the body on joints and reduce friction during movement." [Wikipedia:Sesamoid_bone] comment: TODO - generalize to VAO: Replacement element; an ossicle; often an endochondral replacement element that has cartilage and bone states that develops in dense regular connective tissue (e.g., tendons and ligaments). subset: uberon_slim xref: AEO:0000086 xref: EHDAA2:0003086 xref: FMA:32672 xref: GAID:210 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b3/Gray350.png/200px-Gray350.png xref: MA:0001375 xref: MESH:A.02.835.232.730 xref: ncithesaurus:Sesamoid_Bone xref: SCTID:362914002 is_a: UBERON:0002428 ! limb bone [Term] id: UBERON:0001480 name: proximal carpal bone alt_id: UBERON:FMA_33302-MA_0002557 comment: This class was created automatically from a combination of ontologies xref: FMA:33302 xref: MA:0002557 xref: SCTID:306715004 is_a: UBERON:0001435 ! carpal bone [Term] id: UBERON:0001481 name: distal carpal bone alt_id: UBERON:FMA_33303-MA_0002558 comment: This class was created automatically from a combination of ontologies xref: AAO:0000847 xref: FMA:33303 xref: MA:0002558 xref: SCTID:306716003 is_a: UBERON:0001435 ! carpal bone [Term] id: UBERON:0001482 name: muscle of shoulder alt_id: UBERON:FMA_33531-MA_0000633 def: "A muscle organ that is part of a shoulder [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "muscle organ of shoulder" EXACT [OBOL:automatic] synonym: "shoulder muscle" EXACT [] synonym: "shoulder muscle organ" EXACT [OBOL:automatic] xref: FMA:33531 xref: MA:0000633 is_a: UBERON:0003662 ! implied link automatically realized ! forelimb muscle relationship: part_of UBERON:0001467 intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0001467 ! shoulder relationship: part_of UBERON:0001467 ! shoulder [Term] id: UBERON:0001483 name: skin of shoulder alt_id: UBERON:FMA_34830-MA_0000635 def: "A zone of skin that is part of a shoulder [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "shoulder skin" EXACT [] synonym: "shoulder zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of shoulder" EXACT [OBOL:automatic] xref: EMAPA:18059 xref: FMA:34830 xref: MA:0000635 xref: SCTID:244131002 is_a: UBERON:0001419 ! skin of limb is_a: UBERON:0003531 ! implied link automatically realized ! forelimb skin relationship: part_of UBERON:0001467 intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0001467 ! shoulder relationship: part_of UBERON:0001419 ! skin of limb relationship: part_of UBERON:0001467 ! shoulder [Term] id: UBERON:0001484 name: articular capsule alt_id: UBERON:FMA_34836-MA_0001519 def: "An articular capsule (or joint capsule) is an envelope surrounding a synovial joint. [WP,unvetted]." [Wikipedia:Articular_capsule] comment: This class was created automatically from a combination of ontologies subset: organ_slim subset: uberon_slim synonym: "capsula articularis" EXACT [FMA:34836, FMA:TA] synonym: "fibrous capsule of joint" EXACT [] synonym: "joint capsule" EXACT [] synonym: "joint fibrous capsule" EXACT [] xref: FMA:34836 xref: GAID:263 xref: galen:JointCapsule xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4a/Gray299.png/200px-Gray299.png xref: MA:0001519 xref: MESH:A.02.835.583.443 xref: ncithesaurus:Joint_Capsule xref: SCTID:182238002 is_a: UBERON:0000094 ! membrane organ is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0002217 ! synovial joint [Term] id: UBERON:0001485 name: knee joint alt_id: UBERON:FMA_35175-MA_0000471 def: "The knee joint joins the thigh with the leg and consists of two articulations: one between the femur and tibia, and one between the femur and patella. It is the largest and most complicated joint in the human body. The knee is a mobile trocho-ginglymus (i.e. a pivotal hinge joint), which permits flexion and extension as well as a slight medial and lateral rotation. Since in humans the knee supports nearly the whole weight of the body, it is the joint most vulnerable both to acute injury and the development of osteoarthritis. [WP,unvetted]." [Wikipedia:Knee_joint] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "joint of knee" EXACT [OBOL:automatic] xref: EFO:0001957 xref: EMAPA:19137 xref: FMA:35175 xref: GAID:114 xref: galen:KneeJoint xref: MA:0000471 xref: MESH:A.02.835.583.475 xref: ncithesaurus:Knee_Joint xref: OG:0001003 xref: OpenCyc:Mx4rwCuaYZwpEbGdrcN5Y29ycA xref: SCTID:182204005 is_a: UBERON:0002217 ! synovial joint is_a: UBERON:0004174 ! implied link automatically realized ! leg joint relationship: part_of UBERON:0001465 intersection_of: UBERON:0000982 ! skeletal joint intersection_of: part_of UBERON:0001465 ! knee relationship: part_of UBERON:0001465 ! knee [Term] id: UBERON:0001486 name: hip joint alt_id: UBERON:FMA_35178-MA_0000470 def: "." [Wikipedia:Hip_joint] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "articulatio coxofemoralis" EXACT [] synonym: "femoro-iliac joint" EXACT [] synonym: "hip region joint" EXACT [OBOL:automatic] synonym: "joint of hip" EXACT [OBOL:automatic] synonym: "joint of hip region" EXACT [OBOL:automatic] synonym: "joint of regio coxae" EXACT [OBOL:automatic] synonym: "regio coxae joint" EXACT [OBOL:automatic] xref: BTO:0001502 xref: EMAPA:19136 xref: FMA:35178 xref: GAID:262 xref: galen:HipJoint xref: MA:0000470 xref: MESH:A.02.835.583.411 xref: ncithesaurus:Hip_Joint xref: OG:0001001 xref: OpenCyc:Mx4rwP32b5wpEbGdrcN5Y29ycA xref: SCTID:182201002 is_a: UBERON:0002217 ! synovial joint is_a: UBERON:0003657 ! implied link automatically realized ! limb joint is_a: UBERON:0008114 ! implied link automatically realized ! joint of girdle relationship: part_of UBERON:0001464 intersection_of: UBERON:0000982 ! skeletal joint intersection_of: part_of UBERON:0001464 ! hip relationship: part_of UBERON:0001464 {source="FMA"} ! hip [Term] id: UBERON:0001487 name: joint of foot alt_id: UBERON:FMA_35194-MA_0000464 def: "A skeletal joint that is part of a foot [Obol]." [OBOL:automatic] comment: TODO check FMA - use the set class for now synonym: "articulationes pedis" EXACT [FMA:71349, FMA:TA] synonym: "autopod of hind limb joint" EXACT [OBOL:automatic] synonym: "autopod of hindlimb joint" EXACT [OBOL:automatic] synonym: "autopod of inferior member joint" EXACT [OBOL:automatic] synonym: "autopod of lower extremity joint" EXACT [OBOL:automatic] synonym: "distal free limb segment of hind limb joint" EXACT [OBOL:automatic] synonym: "distal free limb segment of hindlimb joint" EXACT [OBOL:automatic] synonym: "distal free limb segment of inferior member joint" EXACT [OBOL:automatic] synonym: "distal free limb segment of lower extremity joint" EXACT [OBOL:automatic] synonym: "foot joint" EXACT [] synonym: "hind limb autopod joint" EXACT [OBOL:automatic] synonym: "hind limb distal free limb segment joint" EXACT [OBOL:automatic] synonym: "hindlimb autopod joint" EXACT [OBOL:automatic] synonym: "hindlimb distal free limb segment joint" EXACT [OBOL:automatic] synonym: "inferior member autopod joint" EXACT [OBOL:automatic] synonym: "inferior member distal free limb segment joint" EXACT [OBOL:automatic] synonym: "joint of autopod of hind limb" EXACT [OBOL:automatic] synonym: "joint of autopod of hindlimb" EXACT [OBOL:automatic] synonym: "joint of autopod of inferior member" EXACT [OBOL:automatic] synonym: "joint of autopod of lower extremity" EXACT [OBOL:automatic] synonym: "joint of distal free limb segment of hind limb" EXACT [OBOL:automatic] synonym: "joint of distal free limb segment of hindlimb" EXACT [OBOL:automatic] synonym: "joint of distal free limb segment of inferior member" EXACT [OBOL:automatic] synonym: "joint of distal free limb segment of lower extremity" EXACT [OBOL:automatic] synonym: "joint of hind limb autopod" EXACT [OBOL:automatic] synonym: "joint of hind limb distal free limb segment" EXACT [OBOL:automatic] synonym: "joint of hindlimb autopod" EXACT [OBOL:automatic] synonym: "joint of hindlimb distal free limb segment" EXACT [OBOL:automatic] synonym: "joint of inferior member autopod" EXACT [OBOL:automatic] synonym: "joint of inferior member distal free limb segment" EXACT [OBOL:automatic] synonym: "joint of lower extremity autopod" EXACT [OBOL:automatic] synonym: "joint of lower extremity distal free limb segment" EXACT [OBOL:automatic] synonym: "joint of terminal segment of free lower limb" EXACT [OBOL:automatic] synonym: "joints of foot" EXACT [FMA:71349] synonym: "lower extremity autopod joint" EXACT [OBOL:automatic] synonym: "lower extremity distal free limb segment joint" EXACT [OBOL:automatic] synonym: "terminal segment of free lower limb joint" EXACT [OBOL:automatic] xref: FMA:35194 xref: FMA:71349 xref: GAID:256 xref: MA:0000464 xref: MESH:A.02.835.583.378 xref: SCTID:244555001 is_a: UBERON:0002217 ! synovial joint is_a: UBERON:0003840 ! implied link automatically realized ! hindlimb joint is_a: UBERON:0003841 ! implied link automatically realized ! autopod joint relationship: part_of UBERON:0002387 intersection_of: UBERON:0000982 ! skeletal joint intersection_of: part_of UBERON:0002387 ! foot relationship: part_of UBERON:0002387 ! foot [Term] id: UBERON:0001488 name: ankle joint alt_id: UBERON:FMA_35195-MA_0000463 def: "In human anatomy, the ankle joint is formed where the foot and the leg meet. The ankle, or talocrural joint, is a synovial hinge joint that connects the distal ends of the tibia and fibula in the lower limb with the proximal end of the talus bone in the foot. The articulation between the tibia and the talus bears more weight than between the smaller fibula and the talus. The term 'ankle' is used to describe structures in the region of the ankle joint proper. [WP,unvetted]." [Wikipedia:Ankle_joint] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "joint of ankle" EXACT [OBOL:automatic] synonym: "talocrural joint" EXACT [] xref: BTO:0004706 xref: EFO:0001409 xref: FMA:35195 xref: GAID:257 xref: galen:AnkleJoint xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bf/Ankle_en.svg/200px-Ankle_en.svg.png xref: MA:0000463 xref: MESH:A.02.835.583.378.062 xref: ncithesaurus:Ankle_Joint xref: OpenCyc:Mx4rvwiy35wpEbGdrcN5Y29ycA xref: SCTID:182212002 is_a: UBERON:0001487 ! joint of foot relationship: part_of UBERON:0002388 intersection_of: UBERON:0000982 ! skeletal joint intersection_of: part_of UBERON:0002388 ! ankle relationship: part_of UBERON:0002388 ! ankle [Term] id: UBERON:0001489 name: joint of hand alt_id: UBERON:FMA_35245-MA_0000452 def: "A skeletal joint that is part of a hand [Obol]." [OBOL:automatic] comment: TODO check FMA - use the set class for now synonym: "arm autopod joint" EXACT [OBOL:automatic] synonym: "arm distal free limb segment joint" EXACT [OBOL:automatic] synonym: "articulationes manus" EXACT [FMA:71345, FMA:TA] synonym: "autopod of arm joint" EXACT [OBOL:automatic] synonym: "autopod of brachial region joint" EXACT [OBOL:automatic] synonym: "autopod of proximal segment of free upper limb joint" EXACT [OBOL:automatic] synonym: "brachial region autopod joint" EXACT [OBOL:automatic] synonym: "brachial region distal free limb segment joint" EXACT [OBOL:automatic] synonym: "distal free limb segment of arm joint" EXACT [OBOL:automatic] synonym: "distal free limb segment of brachial region joint" EXACT [OBOL:automatic] synonym: "distal free limb segment of proximal segment of free upper limb joint" EXACT [OBOL:automatic] synonym: "hand joint" EXACT [] synonym: "joint of arm autopod" EXACT [OBOL:automatic] synonym: "joint of arm distal free limb segment" EXACT [OBOL:automatic] synonym: "joint of autopod of arm" EXACT [OBOL:automatic] synonym: "joint of autopod of brachial region" EXACT [OBOL:automatic] synonym: "joint of autopod of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "joint of brachial region autopod" EXACT [OBOL:automatic] synonym: "joint of brachial region distal free limb segment" EXACT [OBOL:automatic] synonym: "joint of distal free limb segment of arm" EXACT [OBOL:automatic] synonym: "joint of distal free limb segment of brachial region" EXACT [OBOL:automatic] synonym: "joint of distal free limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "joint of proximal segment of free upper limb autopod" EXACT [OBOL:automatic] synonym: "joint of proximal segment of free upper limb distal free limb segment" EXACT [OBOL:automatic] synonym: "joint of terminal segment of free upper limb" EXACT [OBOL:automatic] synonym: "joints of hand" EXACT [FMA:71345] synonym: "proximal segment of free upper limb autopod joint" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb distal free limb segment joint" EXACT [OBOL:automatic] synonym: "terminal segment of free upper limb joint" EXACT [OBOL:automatic] xref: FMA:35245 xref: FMA:71345 xref: MA:0000452 xref: SCTID:244546004 is_a: UBERON:0002217 ! synovial joint is_a: UBERON:0003839 ! implied link automatically realized ! forelimb joint is_a: UBERON:0003841 ! implied link automatically realized ! autopod joint relationship: part_of UBERON:0002398 intersection_of: UBERON:0000982 ! skeletal joint intersection_of: part_of UBERON:0002398 ! hand relationship: part_of UBERON:0002398 ! hand [Term] id: UBERON:0001490 name: elbow joint alt_id: UBERON:FMA_35289-MA_0000451 def: "Synovial joint that is part of the elbow[Obol]. The elbow joint (Articulatio cubiti) is a compound joint that actually comprises three separate joints: the joints connecting the upper and lower arm: 1) Articulatio humero-ulnaris and 2) Articulatio humero-radialis as well as the proximal joint connecting the forarm bones: 3) Articulatio radio-ulnaris proximalis[HP]." [Wikipedia:Elbow_joint] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Articulatio cubiti" EXACT [] synonym: "cubital region joint" EXACT [OBOL:automatic] synonym: "joint of cubital region" EXACT [OBOL:automatic] synonym: "joint of elbow" EXACT [OBOL:automatic] xref: EMAPA:19102 xref: FMA:35289 xref: GAID:253 xref: galen:ElbowJoint xref: MA:0000451 xref: MESH:A.02.835.583.290 xref: ncithesaurus:Elbow_Joint xref: OG:0000997 xref: SCTID:182169008 is_a: UBERON:0002217 ! synovial joint is_a: UBERON:0003839 ! implied link automatically realized ! forelimb joint relationship: part_of UBERON:0001461 intersection_of: UBERON:0000982 ! skeletal joint intersection_of: part_of UBERON:0001461 ! elbow relationship: part_of UBERON:0001461 ! elbow [Term] id: UBERON:0001491 name: wrist joint alt_id: UBERON:FMA_35291-MA_0000460 def: "In human anatomy, the wrist is variously defined as (1) the carpus or carpal bones, the complex of eight bones forming the proximal skeletal segment of the hand; (2) the wrist joint or radiocarpal joint, the joint between the radius and the carpus; and (3) the anatomical region surrounding the carpus including the distal parts of the bones of the forearm and the proximal parts of the metacarpus or five metacarpal bones and the series of joints between these bones, thus referred to as wrist joints. This region also include the carpal tunnel, the anatomical snuff box, the flexor retinaculum, and the extensor retinaculum. As a consequence of these various definitions, fractures to the carpal bones are referred to as carpal fractures, while fractures such as distal radius fracture are considered fractures to the wrist. [WP,unvetted]." [Wikipedia:Wrist_joint] comment: todo - determine the difference between MA:0000460 and MA:0000461 subset: uberon_slim synonym: "carpal region joint" EXACT [OBOL:automatic] synonym: "joint of carpal region" EXACT [OBOL:automatic] synonym: "joint of wrist" EXACT [] synonym: "radio-carpal joint" EXACT [MA:0000461] synonym: "radiocarpal joint" EXACT [FMA:35291] xref: EMAPA:19205 xref: FMA:35291 xref: GAID:274 xref: galen:WristJoint xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4a/Human_wrist.png/200px-Human_wrist.png xref: MA:0000460 xref: MA:0000461 xref: MESH:A.02.835.583.959 xref: ncithesaurus:Wrist_Joint xref: OpenCyc:Mx4rvZD2PJwpEbGdrcN5Y29ycA xref: SCTID:182178002 is_a: UBERON:0001489 ! joint of hand relationship: part_of UBERON:0001462 intersection_of: UBERON:0000982 ! skeletal joint intersection_of: part_of UBERON:0001462 ! wrist relationship: part_of UBERON:0001462 ! wrist [Term] id: UBERON:0001492 name: radial nerve alt_id: UBERON:FMA_37069-MA_0001171 def: "The radial nerve is a nerve in the human body that supplies the upper limb. It supplies the triceps brachii muscle of the arm, as well as all 12 muscles in the posterior osteofascial compartment of the forearm, as well as the associated joints and overlying skin. It originates from the posterior cord of the brachial plexus with roots from C5, C6, C7, C8 & T1. The radial nerve and its branches supply the dorsal muscles, such as triceps brachii, the extrinsic extensors of the wrist and hands, and the cutaneous nerve supply to most of the back of the hand. (The ulnar nerve cutaneously innervates the back of the little finger and adjacent half of the ring finger). The radial nerve divides into a deep branch (which becomes the posterior interosseous nerve), and continues as the superficial branch which goes on to innervate the dorsum (back) of the hand. [WP,unvetted]." [Wikipedia:Radial_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: EHDAA:5650 xref: EHDAA2:0001584 xref: EMAPA:17278 xref: FMA:37069 xref: GAID:845 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e2/Gray818.png/200px-Gray818.png xref: MA:0001171 xref: MESH:A.08.800.800.720.050.700 xref: ncithesaurus:Radial_Nerve xref: OG:0000896 xref: OpenCyc:Mx4rvfk7E5wpEbGdrcN5Y29ycA xref: SCTID:181011002 is_a: UBERON:0002003 ! peripheral nerve is_a: UBERON:0003433 ! implied link automatically realized ! arm nerve relationship: part_of UBERON:0001460 ! arm relationship: part_of UBERON:0001814 ! brachial nerve plexus [Term] id: UBERON:0001493 name: axillary nerve alt_id: UBERON:FMA_37072-MA_0001166 def: "The axillary nerve is a nerve of the human body, that comes off the posterior cord of the brachial plexus at the level of the axilla (armpit) and carries nerve fibers from C5 and C6. The axillary nerve travels through the quadrangular space with the posterior circumflex humeral artery and vein. [WP,unvetted]." [Wikipedia:Axillary_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "auxillery nerve" RELATED [Wikipedia:Axillary_nerve] synonym: "circumflex humeral nerve" EXACT [] synonym: "circumflex nerve" RELATED [Wikipedia:Axillary_nerve] synonym: "nervus axillaris" RELATED [Wikipedia:Axillary_nerve] xref: EMAPA:18802 xref: FMA:37072 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d4/Brachial_plexus.jpg/200px-Brachial_plexus.jpg xref: MA:0001166 xref: ncithesaurus:Axillary_Nerve xref: OpenCyc:Mx4rvgwMfpwpEbGdrcN5Y29ycA xref: SCTID:181009006 is_a: UBERON:0002003 {source="MA"} ! peripheral nerve is_a: UBERON:0003433 ! implied link automatically realized ! arm nerve relationship: part_of UBERON:0001460 {source="MA"} ! arm relationship: part_of UBERON:0001814 {source="MA"} ! brachial nerve plexus [Term] id: UBERON:0001494 name: ulnar nerve alt_id: UBERON:0005668 alt_id: UBERON:FMA_37319-MA_0001174 def: "In human anatomy, the ulnar nerve is a nerve which runs near the ulna bone. The ulnar nerve is the largest unprotected nerve in the human body (meaning, unprotected by muscle or bone), and the only unprotected nerve that does not serve a purely sensory function (those nerves specifically meant to perceive changes in the environment, such as nerves in the skin). This nerve is directly connected to the little finger, and the adjacent half of the ring finger, supplying the palmar side of these fingers, including both front and back of the tips, perhaps as far back as the fingernail beds. One method of injuring the nerve is to strike the medial epicondyle of the humerus from posteriorly, or inferiorly with the elbow flexed. The ulnar nerve is trapped between the bone and the overlying skin at this point. This is commonly referred to as hitting one's 'funny bone. ' This name is thought to be a pun, based on the sound resemblance between the words 'humerus' and 'humourous' . [WP,unvetted]." [Wikipedia:Ulnar_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: EHDAA:5652 xref: EHDAA2:0002099 xref: EMAPA:17279 xref: FMA:37319 xref: GAID:846 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d4/Brachial_plexus.jpg/200px-Brachial_plexus.jpg xref: MA:0001174 xref: MESH:A.08.800.800.720.050.850 xref: ncithesaurus:Ulnar_Nerve xref: OG:0000922 xref: SCTID:181012009 is_a: UBERON:0002003 ! peripheral nerve is_a: UBERON:0003433 ! implied link automatically realized ! arm nerve relationship: part_of UBERON:0001460 ! arm relationship: part_of UBERON:0001814 ! brachial nerve plexus [Term] id: UBERON:0001495 name: pectoral muscle alt_id: UBERON:FMA_37349-MA_0002423 comment: Note: in FMA isa muscle of pectoral girdle; todo - resolve spatial disjointness inconsistencies and add subset: uberon_slim synonym: "breast muscle" RELATED [BTO:0000023] synonym: "muscle of pectoral part of chest" EXACT [FMA:37349] synonym: "muscle of pectoral region" EXACT [FMA:37349] synonym: "pectoralis muscle" RELATED [BTO:0000023] xref: BTO:0000023 xref: FMA:37349 xref: GAID:153 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6c/Pectoralis_major.png/200px-Pectoralis_major.png xref: MA:0002423 xref: MESH:A.02.633.567.775 xref: ncithesaurus:Pectoralis_Muscle xref: SCTID:181621006 is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0003830 ! implied link automatically realized ! thoracic segment muscle relationship: part_of UBERON:0004464 {source="BTO"} ! musculature of thorax [Term] id: UBERON:0001496 name: ascending aorta alt_id: UBERON:FMA_3736-MA_0002570 def: "The ascending aorta is the portion of the aorta in a two-pass circulatory system that lies between the heart and the arch of aorta[GO]. A portion of the aorta commencing at the upper part of the base of the left ventricle, on a level with the lower border of the third costal cartilage behind the left half of the sternum; it passes obliquely upward, forward, and to the right, in the direction of the heart’s axis, as high as the upper border of the second right costal cartilage, describing a slight curve in its course, and being situated, about 6 cm behind the posterior surface of the sternum. The total length is about 5 cm in length [Wikipedia]" [GO:0035905, Wikipedia:Ascending_aorta] subset: uberon_slim synonym: "pars ascendens aortae" EXACT [] xref: EHDAA:9828 xref: EHDAA2:0000147 xref: EMAPA:17014 xref: EMAPA:18604 xref: EMAPA:25959 xref: FMA:3736 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Gray506.svg/200px-Gray506.svg.png xref: MA:0002570 xref: ncithesaurus:Ascending_Aorta xref: OpenCyc:Mx4rwVFqO5wpEbGdrcN5Y29ycA xref: SCTID:181299009 is_a: UBERON:0001515 ! implied link automatically realized ! thoracic aorta is_a: UBERON:0005800 ! segment of aorta relationship: part_of UBERON:0001515 ! thoracic aorta [Term] id: UBERON:0001497 name: muscle of pelvic girdle alt_id: UBERON:FMA_37367-MA_0000537 def: "A muscle organ that is part of a pelvic girdle [Obol]." [OBOL:automatic] comment: Note that in MA, this is a subclass of pelvis muscle synonym: "girdle-pelvic muscle organ" EXACT [OBOL:automatic] synonym: "muscle organ of girdle-pelvic" EXACT [OBOL:automatic] synonym: "muscle organ of pelvic girdle" EXACT [OBOL:automatic] synonym: "muscle organ of pelvic girdle bone" EXACT [OBOL:automatic] synonym: "pelvic girdle bone muscle organ" EXACT [OBOL:automatic] synonym: "pelvic girdle muscle" EXACT [] synonym: "pelvic girdle muscle organ" EXACT [OBOL:automatic] xref: FMA:37367 xref: MA:0000537 is_a: UBERON:0003663 {source="FMA"} ! hindlimb muscle relationship: part_of UBERON:0001271 intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0001271 ! pelvic girdle [Term] id: UBERON:0001498 name: muscle of foot alt_id: UBERON:FMA_37369-MA_0000652 def: "A muscle organ that is part of a foot [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "autopod of hind limb muscle organ" EXACT [OBOL:automatic] synonym: "autopod of hindlimb muscle organ" EXACT [OBOL:automatic] synonym: "autopod of inferior member muscle organ" EXACT [OBOL:automatic] synonym: "autopod of lower extremity muscle organ" EXACT [OBOL:automatic] synonym: "distal free limb segment of hind limb muscle organ" EXACT [OBOL:automatic] synonym: "distal free limb segment of hindlimb muscle organ" EXACT [OBOL:automatic] synonym: "distal free limb segment of inferior member muscle organ" EXACT [OBOL:automatic] synonym: "distal free limb segment of lower extremity muscle organ" EXACT [OBOL:automatic] synonym: "foot muscle" EXACT [] synonym: "foot muscle organ" EXACT [OBOL:automatic] synonym: "hind limb autopod muscle organ" EXACT [OBOL:automatic] synonym: "hind limb distal free limb segment muscle organ" EXACT [OBOL:automatic] synonym: "hindlimb autopod muscle organ" EXACT [OBOL:automatic] synonym: "hindlimb distal free limb segment muscle organ" EXACT [OBOL:automatic] synonym: "inferior member autopod muscle organ" EXACT [OBOL:automatic] synonym: "inferior member distal free limb segment muscle organ" EXACT [OBOL:automatic] synonym: "lower extremity autopod muscle organ" EXACT [OBOL:automatic] synonym: "lower extremity distal free limb segment muscle organ" EXACT [OBOL:automatic] synonym: "muscle organ of autopod of hind limb" EXACT [OBOL:automatic] synonym: "muscle organ of autopod of hindlimb" EXACT [OBOL:automatic] synonym: "muscle organ of autopod of inferior member" EXACT [OBOL:automatic] synonym: "muscle organ of autopod of lower extremity" EXACT [OBOL:automatic] synonym: "muscle organ of distal free limb segment of hind limb" EXACT [OBOL:automatic] synonym: "muscle organ of distal free limb segment of hindlimb" EXACT [OBOL:automatic] synonym: "muscle organ of distal free limb segment of inferior member" EXACT [OBOL:automatic] synonym: "muscle organ of distal free limb segment of lower extremity" EXACT [OBOL:automatic] synonym: "muscle organ of foot" EXACT [OBOL:automatic] synonym: "muscle organ of hind limb autopod" EXACT [OBOL:automatic] synonym: "muscle organ of hind limb distal free limb segment" EXACT [OBOL:automatic] synonym: "muscle organ of hindlimb autopod" EXACT [OBOL:automatic] synonym: "muscle organ of hindlimb distal free limb segment" EXACT [OBOL:automatic] synonym: "muscle organ of inferior member autopod" EXACT [OBOL:automatic] synonym: "muscle organ of inferior member distal free limb segment" EXACT [OBOL:automatic] synonym: "muscle organ of lower extremity autopod" EXACT [OBOL:automatic] synonym: "muscle organ of lower extremity distal free limb segment" EXACT [OBOL:automatic] synonym: "muscle organ of terminal segment of free lower limb" EXACT [OBOL:automatic] synonym: "terminal segment of free lower limb muscle organ" EXACT [OBOL:automatic] xref: BTO:0000477 xref: FMA:37369 xref: MA:0000652 is_a: UBERON:0003663 ! implied link automatically realized ! hindlimb muscle relationship: part_of UBERON:0002387 intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0002387 ! foot relationship: part_of UBERON:0002387 ! foot [Term] id: UBERON:0001499 name: muscle of arm alt_id: UBERON:FMA_37370-MA_0000594 def: "A muscle organ that is part of an arm [Obol]." [OBOL:automatic] comment: See notes on UBERON:0001460 for possible terminological confusion over term 'arm' synonym: "arm muscle" EXACT [MA:0000594] synonym: "arm muscle system" RELATED [EHDAA2:0000141] synonym: "muscle of upper arm or lower arm" EXACT [UBERON:cjm] synonym: "upper arm / lower arm muscle" EXACT [UBERON:cjm] xref: EHDAA2:0000141 xref: MA:0000594 is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0003662 ! implied link automatically realized ! forelimb muscle relationship: part_of UBERON:0001460 intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0001460 ! arm relationship: part_of UBERON:0001460 ! arm [Term] id: UBERON:0001500 name: muscle of hand alt_id: UBERON:FMA_37372-MA_0000628 def: "A muscle organ that is part of a hand [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "arm autopod muscle organ" EXACT [OBOL:automatic] synonym: "arm distal free limb segment muscle organ" EXACT [OBOL:automatic] synonym: "autopod of arm muscle organ" EXACT [OBOL:automatic] synonym: "autopod of brachial region muscle organ" EXACT [OBOL:automatic] synonym: "autopod of proximal segment of free upper limb muscle organ" EXACT [OBOL:automatic] synonym: "brachial region autopod muscle organ" EXACT [OBOL:automatic] synonym: "brachial region distal free limb segment muscle organ" EXACT [OBOL:automatic] synonym: "distal free limb segment of arm muscle organ" EXACT [OBOL:automatic] synonym: "distal free limb segment of brachial region muscle organ" EXACT [OBOL:automatic] synonym: "distal free limb segment of proximal segment of free upper limb muscle organ" EXACT [OBOL:automatic] synonym: "hand muscle" EXACT [] synonym: "hand muscle organ" EXACT [OBOL:automatic] synonym: "muscle organ of arm autopod" EXACT [OBOL:automatic] synonym: "muscle organ of arm distal free limb segment" EXACT [OBOL:automatic] synonym: "muscle organ of autopod of arm" EXACT [OBOL:automatic] synonym: "muscle organ of autopod of brachial region" EXACT [OBOL:automatic] synonym: "muscle organ of autopod of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "muscle organ of brachial region autopod" EXACT [OBOL:automatic] synonym: "muscle organ of brachial region distal free limb segment" EXACT [OBOL:automatic] synonym: "muscle organ of distal free limb segment of arm" EXACT [OBOL:automatic] synonym: "muscle organ of distal free limb segment of brachial region" EXACT [OBOL:automatic] synonym: "muscle organ of distal free limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "muscle organ of hand" EXACT [OBOL:automatic] synonym: "muscle organ of proximal segment of free upper limb autopod" EXACT [OBOL:automatic] synonym: "muscle organ of proximal segment of free upper limb distal free limb segment" EXACT [OBOL:automatic] synonym: "muscle organ of terminal segment of free upper limb" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb autopod muscle organ" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb distal free limb segment muscle organ" EXACT [OBOL:automatic] synonym: "terminal segment of free upper limb muscle organ" EXACT [OBOL:automatic] xref: FMA:37372 xref: MA:0000628 is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0003662 ! implied link automatically realized ! forelimb muscle relationship: part_of UBERON:0002398 intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0002398 ! hand relationship: part_of UBERON:0002398 ! hand [Term] id: UBERON:0001501 name: lumbrical of hand alt_id: UBERON:FMA_37385-MA_0002316 comment: This class was created automatically from a combination of ontologies synonym: "hand lumbrical" EXACT [] synonym: "hand lumbrical muscle" EXACT [] xref: FMA:37385 xref: MA:0002316 xref: SCTID:181654008 is_a: UBERON:0001500 ! muscle of hand [Term] id: UBERON:0001502 name: interosseous muscle of hand alt_id: UBERON:FMA_37417-MA_0002313 comment: This class was created automatically from a combination of ontologies synonym: "hand interosseous muscle" EXACT [] xref: FMA:37417 xref: MA:0002313 xref: ncithesaurus:Hand_Interosseous_Muscle xref: SCTID:265804003 is_a: UBERON:0001500 ! implied link automatically realized ! muscle of hand is_a: UBERON:0006508 ! implied link automatically realized ! interosseus muscle relationship: part_of UBERON:0002398 intersection_of: UBERON:0006508 ! interosseus muscle intersection_of: part_of UBERON:0002398 ! hand [Term] id: UBERON:0001503 name: dorsal interosseous of hand alt_id: UBERON:FMA_37418-MA_0002314 def: "The dorsal interossei of the hand are muscles that occupy the space between the metacarpals. There are four dorsal interossei in each hand. They are specified as 'dorsal' to contrast them with the palmar interossei, which are located on the anterior side of the metacarpals. The dorsal interosseous muscles are bipennate, with each muscle arising by two heads from the adjacent sides of the metacarpal bones, but more extensively from the metacarpal bone of the finger into which the muscle is inserted. They are inserted into the bases of the proximal phalanges and into the extensor expansion of the corresponding extensor digitorum tendon. The middle digit has two dorsal interossei insert onto it while the first digit (thumb) and the fifth digit (little finger) have none[WP]." [Wikipedia:Dorsal_interossei_of_the_hand] synonym: "dorsal hand interosseus muscle" EXACT [] xref: FMA:37418 xref: MA:0002314 xref: ncithesaurus:Dorsal_Hand_Interosseous_Muscle xref: SCTID:245002007 is_a: UBERON:0001502 ! interosseous muscle of hand [Term] id: UBERON:0001504 name: lumbrical of foot alt_id: UBERON:FMA_37453-MA_0002305 comment: This class was created automatically from a combination of ontologies synonym: "foot lumbrical" EXACT [] synonym: "foot lumbrical muscle" EXACT [] xref: FMA:37453 xref: MA:0002305 xref: SCTID:181715003 is_a: UBERON:0001498 ! muscle of foot [Term] id: UBERON:0001505 name: coracobrachialis alt_id: UBERON:FMA_37664-MA_0002282 def: "The Coracobrachialis is the smallest of the three muscles that attach to the coracoid process of the scapula. (The other two muscles are pectoralis minor and biceps brachii. ) It is situated at the upper and medial part of the arm. It is perforated by and innervated by the musculocutaneous nerve. [WP,unvetted]." [Wikipedia:Coracobrachialis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "coracobrachial" EXACT [] synonym: "coracobrachialis muscle" RELATED [Wikipedia:Coracobrachialis_muscle] synonym: "Pirogoff's aponeurosis" EXACT [FMA:37664] xref: FMA:37664 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Coracobrachialis.png/200px-Coracobrachialis.png xref: MA:0002282 xref: ncithesaurus:Coracobrachialis is_a: UBERON:0004255 {source="FMA"} ! forelimb stylopod muscle [Term] id: UBERON:0001506 name: brachialis alt_id: UBERON:FMA_37667-MA_0002271 def: "The brachialis (brachialis anticus) is a muscle in the upper arm that flexes the elbow joint. It lies just deep of the biceps brachii, and is a synergist that assists the biceps brachii in flexing at the elbow. It makes up part of the floor of the region known as the cubital fossa. [WP,unvetted]." [Wikipedia:Brachialis_muscle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "brachialis anticus muscle" RELATED [Wikipedia:Brachialis_muscle] synonym: "brachialis muscle" RELATED [Wikipedia:Brachialis_muscle] synonym: "Casserio's muscle" EXACT [] xref: EHDAA:8281 xref: EHDAA2:0000181 xref: EMAPA:19068 xref: EMAPA:19109 xref: FMA:37667 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/87/Brachialis.png/200px-Brachialis.png xref: MA:0002271 xref: ncithesaurus:Brachialis xref: OG:0001026 is_a: UBERON:0001499 ! muscle of arm [Term] id: UBERON:0001507 name: biceps brachii alt_id: UBERON:FMA_37670-MA_0002269 def: "In human anatomy, the biceps brachii is a muscle located on the upper arm. The biceps has several functions, the most important being to rotate the forearm and to flex the elbow. [WP,unvetted]." [Wikipedia:Biceps_brachii_muscle] subset: uberon_slim synonym: "biceps" BROAD [EHDAA2:0000167] synonym: "biceps brachii %26 brachialis muscles" RELATED [Wikipedia:Biceps_brachii_muscle] synonym: "biceps brachii muscle" RELATED [Wikipedia:Biceps_brachii_muscle] synonym: "biceps cubiti" RELATED [Wikipedia:Biceps_brachii_muscle] synonym: "biceps muscle" RELATED [Wikipedia:Biceps_brachii_muscle] xref: BTO:0003419 xref: EHDAA:8279 xref: EHDAA2:0000167 xref: EMAPA:19067 xref: EMAPA:19108 xref: FMA:37670 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/36/Biceps_%28PSF%29.jpg/200px-Biceps_%28PSF%29.jpg xref: MA:0002269 xref: ncithesaurus:Biceps xref: OG:0000861 xref: SCTID:265802004 is_a: UBERON:0001630 {source="MA"} ! muscle organ is_a: UBERON:0004255 ! implied link automatically realized ! forelimb stylopod muscle relationship: part_of UBERON:0003822 {source="OG"} ! forelimb stylopod [Term] id: UBERON:0001508 name: arch of aorta alt_id: UBERON:FMA_3768-MA_0000475-MIAA_0000059 def: "begins at the level of the upper border of the second sternocostal articulation of the right side, and runs at first upward, backward, and to the left in front of the trachea; it is then directed backward on the left side of the trachea and finally passes downward on the left side of the body of the fourth thoracic vertebra, at the lower border of which it becomes continuous with the descending aorta[WP]." [Wikipedia:Arch_of_aorta] comment: Do not confuse with aortic arch subset: uberon_slim synonym: "aortic arch" RELATED [FMA:3768] synonym: "arcus aortae" EXACT [FMA:3768, FMA:TA] synonym: "thoracic aorta" RELATED [GAID:471] xref: BTO:0000157 xref: EFO:0002526 xref: EHDAA2:0000132 xref: EMAPA:17613 xref: EMAPA:18602 xref: FMA:3768 xref: GAID:471 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Gray506.svg/200px-Gray506.svg.png xref: MA:0000475 xref: OG:0001196 xref: SCTID:181300001 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0001515 ! implied link automatically realized ! thoracic aorta is_a: UBERON:0005800 ! segment of aorta relationship: develops_from UBERON:0003121 ! aortic arch 4 relationship: part_of UBERON:0001515 ! thoracic aorta [Term] id: UBERON:0001509 name: triceps brachii alt_id: UBERON:FMA_37688-MA_0002399 def: "The triceps brachii muscle (Latin for 'three-headed' muscle of the arm, it is called a three headed muscle because there are three bundles of muscle, each of different origin, joining together at the elbow) is the large muscle on the back of the human upper limb. It is the muscle principally responsible for extension of the elbow joint (i.e. straightening of the arm). Though a similarly-named muscle, the triceps surae, is found on the lower leg, the triceps brachii is commonly called simply the 'triceps'. [WP,unvetted]." [Wikipedia:Triceps_brachii] subset: uberon_slim synonym: "triceps" EXACT [EHDAA2:0002080] synonym: "triceps brachii" RELATED [Wikipedia:Triceps_brachii_muscle] synonym: "triceps muscle" RELATED [Wikipedia:Triceps_brachii_muscle] xref: EHDAA:8287 xref: EHDAA2:0002080 xref: EMAPA:19070 xref: FMA:37688 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/83/Triceps_brachii.png/200px-Triceps_brachii.png xref: MA:0002399 xref: ncithesaurus:Triceps xref: OG:0000851 xref: SCTID:181623009 is_a: UBERON:0001630 {source="MA"} ! muscle organ is_a: UBERON:0004255 ! implied link automatically realized ! forelimb stylopod muscle relationship: part_of UBERON:0003822 {source="OG"} ! forelimb stylopod [Term] id: UBERON:0001510 name: skin of knee alt_id: UBERON:FMA_37800-MA_0000668 def: "A zone of skin that is part of a knee [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "knee skin" EXACT [] synonym: "knee zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of knee" EXACT [OBOL:automatic] xref: EMAPA:18151 xref: FMA:37800 xref: MA:0000668 xref: ncithesaurus:Knee_Skin xref: SCTID:181552001 is_a: UBERON:0001419 ! skin of limb is_a: UBERON:0001511 ! implied link automatically realized ! skin of leg relationship: part_of UBERON:0001465 intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0001465 ! knee relationship: part_of UBERON:0001465 ! knee [Term] id: UBERON:0001511 name: skin of leg alt_id: UBERON:FMA_37828-MA_0000674 def: "A zone of skin that is part of a leg [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "leg skin" EXACT [] synonym: "leg zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of leg" EXACT [OBOL:automatic] xref: EMAPA:18156 xref: EMAPA:18159 xref: FMA:37828 xref: MA:0000674 xref: ncithesaurus:Leg_Skin is_a: UBERON:0001419 ! skin of limb is_a: UBERON:0003532 ! implied link automatically realized ! hindlimb skin relationship: part_of UBERON:0000978 intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0000978 ! leg [Term] id: UBERON:0001512 name: skin of ankle alt_id: UBERON:FMA_37831-MA_0000641 def: "A zone of skin that is part of an ankle [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "ankle skin" EXACT [] synonym: "ankle zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of ankle" EXACT [OBOL:automatic] xref: FMA:37831 xref: MA:0000641 xref: ncithesaurus:Ankle_Skin xref: SCTID:181560000 is_a: UBERON:0001419 ! skin of limb is_a: UBERON:0003532 ! implied link automatically realized ! hindlimb skin relationship: part_of UBERON:0002388 intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0002388 ! ankle relationship: part_of UBERON:0002388 ! ankle [Term] id: UBERON:0001513 name: skin of foot alt_id: UBERON:FMA_37834-MA_0000654 def: "A zone of skin that is part of a foot [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "autopod of hind limb zone of skin" EXACT [OBOL:automatic] synonym: "autopod of hindlimb zone of skin" EXACT [OBOL:automatic] synonym: "autopod of inferior member zone of skin" EXACT [OBOL:automatic] synonym: "autopod of lower extremity zone of skin" EXACT [OBOL:automatic] synonym: "distal free limb segment of hind limb zone of skin" EXACT [OBOL:automatic] synonym: "distal free limb segment of hindlimb zone of skin" EXACT [OBOL:automatic] synonym: "distal free limb segment of inferior member zone of skin" EXACT [OBOL:automatic] synonym: "distal free limb segment of lower extremity zone of skin" EXACT [OBOL:automatic] synonym: "foot skin" EXACT [] synonym: "foot zone of skin" EXACT [OBOL:automatic] synonym: "hind limb autopod zone of skin" EXACT [OBOL:automatic] synonym: "hind limb distal free limb segment zone of skin" EXACT [OBOL:automatic] synonym: "hindlimb autopod zone of skin" EXACT [OBOL:automatic] synonym: "hindlimb distal free limb segment zone of skin" EXACT [OBOL:automatic] synonym: "inferior member autopod zone of skin" EXACT [OBOL:automatic] synonym: "inferior member distal free limb segment zone of skin" EXACT [OBOL:automatic] synonym: "lower extremity autopod zone of skin" EXACT [OBOL:automatic] synonym: "lower extremity distal free limb segment zone of skin" EXACT [OBOL:automatic] synonym: "skin of hind-paw" NARROW SENSU [EMAPA:18504] synonym: "terminal segment of free lower limb zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of autopod of hind limb" EXACT [OBOL:automatic] synonym: "zone of skin of autopod of hindlimb" EXACT [OBOL:automatic] synonym: "zone of skin of autopod of inferior member" EXACT [OBOL:automatic] synonym: "zone of skin of autopod of lower extremity" EXACT [OBOL:automatic] synonym: "zone of skin of distal free limb segment of hind limb" EXACT [OBOL:automatic] synonym: "zone of skin of distal free limb segment of hindlimb" EXACT [OBOL:automatic] synonym: "zone of skin of distal free limb segment of inferior member" EXACT [OBOL:automatic] synonym: "zone of skin of distal free limb segment of lower extremity" EXACT [OBOL:automatic] synonym: "zone of skin of foot" EXACT [OBOL:automatic] synonym: "zone of skin of hind limb autopod" EXACT [OBOL:automatic] synonym: "zone of skin of hind limb distal free limb segment" EXACT [OBOL:automatic] synonym: "zone of skin of hindlimb autopod" EXACT [OBOL:automatic] synonym: "zone of skin of hindlimb distal free limb segment" EXACT [OBOL:automatic] synonym: "zone of skin of inferior member autopod" EXACT [OBOL:automatic] synonym: "zone of skin of inferior member distal free limb segment" EXACT [OBOL:automatic] synonym: "zone of skin of lower extremity autopod" EXACT [OBOL:automatic] synonym: "zone of skin of lower extremity distal free limb segment" EXACT [OBOL:automatic] synonym: "zone of skin of terminal segment of free lower limb" EXACT [OBOL:automatic] xref: EMAPA:18504 xref: FMA:37834 xref: MA:0000654 xref: ncithesaurus:Foot_Skin xref: SCTID:181529000 is_a: UBERON:0001419 ! skin of limb is_a: UBERON:0003532 ! implied link automatically realized ! hindlimb skin relationship: part_of UBERON:0002387 intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0002387 ! foot relationship: part_of UBERON:0002387 ! foot [Term] id: UBERON:0001514 name: descending aorta alt_id: UBERON:FMA_3784-MA_0002571 def: " The descending aorta is the portion of the aorta in a two-pass circulatory system from the arch of aorta to the point where it divides into the common iliac arteries[GO]. The descending aorta is part of the aorta, the largest artery in the body. The descending aorta is the part of the aorta beginning at the aortic arch that runs down through the chest and abdomen. The descending aorta is divided into two portions, the thoracic and abdominal, in correspondence with the two great cavities of the trunk in which it is situated. Within the abdomen, the descending aorta branches into the two common iliac arteries which serve the legs. [WP,unvetted]." [GO:0035906, Wikipedia:Descending_aorta] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "aorta descendens" RELATED [Wikipedia:Descending_aorta] synonym: "pars descendens aortae" EXACT [FMA:3784] xref: EMAPA:18605 xref: FMA:3784 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Gray506.svg/200px-Gray506.svg.png xref: MA:0002571 xref: ncithesaurus:Descending_Aorta xref: OpenCyc:Mx4rv4EE35wpEbGdrcN5Y29ycA xref: SCTID:261399002 is_a: UBERON:0005800 {source="FMA"} ! segment of aorta relationship: develops_from UBERON:0005805 {source="Wikipedia"} ! dorsal aorta relationship: part_of UBERON:0000947 {source="FMA"} ! aorta relationship: part_of UBERON:0001009 ! circulatory system [Term] id: UBERON:0001515 name: thoracic aorta alt_id: UBERON:FMA_3786-MA_0002569 def: "The thoracic aorta is contained in the posterior mediastinal cavity. It begins at the lower border of the fourth thoracic vertebra where it is continuous with the aortic arch, and ends in front of the lower border of the twelfth thoracic vertebra, at the aortic hiatus in the diaphragm where it becomes the abdominal aorta. At its commencement, it is situated on the left of the vertebral column; it approaches the median line as it descends; and, at its termination, lies directly in front of the column. The vessel describes a curve which is concave forward; as the branches given off from it are small, its diminution in size is insignificant. It has a radius of approximately 1.16 cm. [WP,unvetted]." [Wikipedia:Thoracic_aorta] subset: uberon_slim synonym: "thoracic part of aorta" EXACT [] xref: BTO:0000157 xref: EFO:0002525 xref: EMAPA:18603 xref: FMA:3786 xref: GAID:471 xref: galen:ThoracicAorta xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/75/Gray530.png/200px-Gray530.png xref: MA:0002569 xref: MESH:A.07.231.114.056.372 xref: ncithesaurus:Thoracic_Aorta xref: OpenCyc:Mx4rveb9TpwpEbGdrcN5Y29ycA xref: SCTID:302510009 is_a: UBERON:0005800 {source="FMA"} ! segment of aorta relationship: part_of UBERON:0000915 intersection_of: UBERON:0005800 ! segment of aorta intersection_of: part_of UBERON:0000915 ! thoracic segment of trunk [Term] id: UBERON:0001516 name: abdominal aorta alt_id: UBERON:FMA_3789-MA_0000474 def: "Abdominal part of aorta: the distal part of the descending aorta, which is the continuation of the thoracic part and gives rise to the inferior phrenic, lumbar, median sacral, superior and inferior mesenteric, middle suprarenal, renal, and testicular or ovarian arteries, and celiac trunk[BTO]. The abdominal aorta is the largest artery in the abdominal cavity. As part of the aorta, it is a direct continuation of descending aorta(of the thorax). [WP,unvetted]." [BTO:0002976, Wikipedia:Abdominal_aorta] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "abdominal part of aorta" EXACT [FMA:3789] synonym: "abdominal part of aorta" RELATED [BTO:0002976] synonym: "aorta abdominalis" RELATED [BTO:0002976] synonym: "descending abdominal aorta" EXACT [FMA:3789] synonym: "pars abdominalis aortae" EXACT [FMA:3789] synonym: "pars abdominalis aortae" RELATED [BTO:0002976] xref: BTO:0002976 xref: EFO:0002524 xref: EMAPA:17856 xref: EMAPA:18607 xref: FMA:3789 xref: GAID:470 xref: galen:AbdominalAorta xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/af/Gray531.png/200px-Gray531.png xref: MA:0000474 xref: MESH:A.07.231.114.056.205 xref: ncithesaurus:Abdominal_Aorta xref: OpenCyc:Mx4rvYhWCZwpEbGdrcN5Y29ycA xref: SCTID:244231007 is_a: UBERON:0005800 ! implied link automatically realized ! segment of aorta relationship: part_of UBERON:0000916 intersection_of: UBERON:0005800 ! segment of aorta intersection_of: part_of UBERON:0000916 ! abdomen relationship: part_of UBERON:0001514 {source="FMA"} ! descending aorta [Term] id: UBERON:0001517 name: skin of elbow alt_id: UBERON:0003399 alt_id: UBERON:FMA_38250-MA_0000610 def: "A zone of skin that is part of a elbow [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "cubital region zone of skin" EXACT [OBOL:automatic] synonym: "elbow skin" EXACT [] synonym: "elbow zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of cubital region" EXACT [OBOL:automatic] synonym: "zone of skin of elbow" EXACT [OBOL:automatic] xref: EMAPA:18051 xref: FMA:38250 xref: MA:0000610 xref: ncithesaurus:Elbow_Skin xref: SCTID:181534001 is_a: UBERON:0002427 ! arm skin relationship: part_of UBERON:0001461 intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0001461 ! elbow relationship: part_of UBERON:0001460 ! arm relationship: part_of UBERON:0001461 ! elbow [Term] id: UBERON:0001518 name: skin of wrist alt_id: UBERON:FMA_38280-MA_0000638 def: "A zone of skin that is part of a wrist [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "carpal region zone of skin" EXACT [OBOL:automatic] synonym: "wrist skin" EXACT [] synonym: "wrist zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of carpal region" EXACT [OBOL:automatic] synonym: "zone of skin of wrist" EXACT [OBOL:automatic] xref: FMA:38280 xref: MA:0000638 xref: ncithesaurus:Wrist_Skin xref: SCTID:181540008 is_a: UBERON:0001419 ! skin of limb is_a: UBERON:0003531 ! implied link automatically realized ! forelimb skin relationship: part_of UBERON:0001462 intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0001462 ! wrist relationship: part_of UBERON:0001462 ! wrist [Term] id: UBERON:0001519 name: skin of hand alt_id: UBERON:FMA_38295-MA_0000630 def: "A zone of skin that is part of a hand [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "arm autopod zone of skin" EXACT [OBOL:automatic] synonym: "arm distal free limb segment zone of skin" EXACT [OBOL:automatic] synonym: "autopod of arm zone of skin" EXACT [OBOL:automatic] synonym: "autopod of brachial region zone of skin" EXACT [OBOL:automatic] synonym: "autopod of proximal segment of free upper limb zone of skin" EXACT [OBOL:automatic] synonym: "brachial region autopod zone of skin" EXACT [OBOL:automatic] synonym: "brachial region distal free limb segment zone of skin" EXACT [OBOL:automatic] synonym: "distal free limb segment of arm zone of skin" EXACT [OBOL:automatic] synonym: "distal free limb segment of brachial region zone of skin" EXACT [OBOL:automatic] synonym: "distal free limb segment of proximal segment of free upper limb zone of skin" EXACT [OBOL:automatic] synonym: "hand skin" EXACT [] synonym: "hand zone of skin" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb autopod zone of skin" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb distal free limb segment zone of skin" EXACT [OBOL:automatic] synonym: "skin of fore-paw" NARROW SENSU [EMAPA:18486] synonym: "terminal segment of free upper limb zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of arm autopod" EXACT [OBOL:automatic] synonym: "zone of skin of arm distal free limb segment" EXACT [OBOL:automatic] synonym: "zone of skin of autopod of arm" EXACT [OBOL:automatic] synonym: "zone of skin of autopod of brachial region" EXACT [OBOL:automatic] synonym: "zone of skin of autopod of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "zone of skin of brachial region autopod" EXACT [OBOL:automatic] synonym: "zone of skin of brachial region distal free limb segment" EXACT [OBOL:automatic] synonym: "zone of skin of distal free limb segment of arm" EXACT [OBOL:automatic] synonym: "zone of skin of distal free limb segment of brachial region" EXACT [OBOL:automatic] synonym: "zone of skin of distal free limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "zone of skin of hand" EXACT [OBOL:automatic] synonym: "zone of skin of proximal segment of free upper limb autopod" EXACT [OBOL:automatic] synonym: "zone of skin of proximal segment of free upper limb distal free limb segment" EXACT [OBOL:automatic] synonym: "zone of skin of terminal segment of free upper limb" EXACT [OBOL:automatic] xref: EMAPA:18486 xref: FMA:38295 xref: MA:0000630 xref: ncithesaurus:Hand_Skin xref: SCTID:181527003 is_a: UBERON:0001419 ! skin of limb is_a: UBERON:0003531 ! implied link automatically realized ! forelimb skin relationship: part_of UBERON:0002398 intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0002398 ! hand [Term] id: UBERON:0001520 name: pronator teres alt_id: UBERON:FMA_38450-MA_0002357 def: "The pronator teres is a muscle of the human body (located mainly in the forearm) that, along with the pronator quadratus, serves to pronate the forearm (turning it so the palm faces posteriorly). [WP,unvetted]." [Wikipedia:Pronator_teres] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:38450 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/87/Pronator-teres.png/200px-Pronator-teres.png xref: MA:0002357 xref: ncithesaurus:Pronator_Teres xref: SCTID:302514000 is_a: UBERON:0001630 ! muscle organ relationship: part_of UBERON:0000475 ! organism subdivision [Term] id: UBERON:0001521 name: flexor carpi radialis alt_id: UBERON:FMA_38459-MA_0002297 def: "In anatomy, flexor carpi radialis is a muscle of the human forearm that acts to flex and abduct the hand. [WP,unvetted]." [Wikipedia:Flexor_carpi_radialis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:38459 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/59/Flexor-carpi-radialis.png/200px-Flexor-carpi-radialis.png xref: MA:0002297 xref: ncithesaurus:Flexor_Carpi_Radialis is_a: UBERON:0000366 ! flexor muscle is_a: UBERON:0004255 ! implied link automatically realized ! forelimb stylopod muscle relationship: part_of UBERON:0003822 ! forelimb stylopod [Term] id: UBERON:0001522 name: flexor carpi ulnaris alt_id: UBERON:FMA_38465-MA_0002298 def: "The flexor carpi ulnaris muscle (FCU) is a muscle of the human forearm that acts to flex and adduct the hand. [WP,unvetted]." [Wikipedia:Flexor_carpi_ulnaris] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:38465 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c1/FCU.png/200px-FCU.png xref: MA:0002298 xref: ncithesaurus:Flexor_Carpi_Ulnaris xref: SCTID:244985003 is_a: UBERON:0000366 ! flexor muscle is_a: UBERON:0004255 ! implied link automatically realized ! forelimb stylopod muscle relationship: part_of UBERON:0003822 ! forelimb stylopod [Term] id: UBERON:0001523 name: flexor digitorum profundus alt_id: UBERON:FMA_38478-MA_0002300 def: "In human anatomy, the flexor digitorum profundus is a muscle in the forearm that flexes the fingers. It is considered to be an extrinsic muscle because its action is at a different location than the main body of the muscle. Flexor digitorum profundus, along with flexor digitorum superficialis have long tendons that run down the arm and through the carpal tunnel and attach to the palmar side of the phalanges of the fingers. This muscle originates from the upper 3/4ths anterior and medial side of the ulna. Flexor digitorum profundus lies deep to superficialis, but it attaches more distally. To get around this problem profundus's tendons go through the tendons of superficialis, and end up attaching to the distal phalanx. [WP,unvetted]." [Wikipedia:Flexor_digitorum_profundus] comment: Note that in EMAPA, this is part of the leg, which is presumably a mistake subset: uberon_slim xref: BTO:0001246 xref: EMAPA:19319 xref: FMA:38478 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/24/Flexor-digitorum-profundis.png/200px-Flexor-digitorum-profundis.png xref: MA:0002300 xref: ncithesaurus:Flexor_Digitorum_Profundus is_a: UBERON:0000366 {source="BTO"} ! flexor muscle is_a: UBERON:0004255 ! implied link automatically realized ! forelimb stylopod muscle relationship: part_of UBERON:0003822 {source="FMA"} ! forelimb stylopod [Term] id: UBERON:0001524 name: extensor carpi radialis longus alt_id: UBERON:FMA_38494-MA_0002291 def: "Extensor carpi radialis longus is one of the five main muscles that control movements at the wrist. This muscle is quite long, starting on the lateral side of the humerus, and attaching to the base of the second metacarpal bone (metacarpal of the index finger). [WP,unvetted]." [Wikipedia:Extensor_carpi_radialis_longus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:38494 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/75/ECR-longus.png/200px-ECR-longus.png xref: MA:0002291 xref: ncithesaurus:Extensor_Carpi_Radialis_Longus is_a: UBERON:0000311 ! extensor muscle is_a: UBERON:0003662 ! implied link automatically realized ! forelimb muscle relationship: part_of UBERON:0001462 ! wrist [Term] id: UBERON:0001525 name: extensor carpi radialis brevis alt_id: UBERON:FMA_38497-MA_0002290 def: "The Extensor carpi radialis brevis is shorter and thicker than the extensor carpi radialis longus. The longus muscle can be found above the distal end of the Extensor carpi radialis brevis. [WP,unvetted]." [Wikipedia:Extensor_carpi_radialis_brevis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:38497 xref: MA:0002290 xref: ncithesaurus:Extensor_Carpi_Radialis_Brevis is_a: UBERON:0000311 ! extensor muscle is_a: UBERON:0003662 ! implied link automatically realized ! forelimb muscle relationship: part_of UBERON:0001462 ! wrist [Term] id: UBERON:0001526 name: extensor carpi ulnaris alt_id: UBERON:FMA_38506-MA_0002292 def: "Extensor carpi ulnaris is a muscle located in the human forearm that acts to extend and adduct the wrist. Being an extensor muscle, extensor carpi ulnaris is on the posterior side of the forearm. [WP,unvetted]." [Wikipedia:Extensor_carpi_ulnaris] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:38506 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5f/Gray418.png/200px-Gray418.png xref: MA:0002292 xref: ncithesaurus:Extensor_Carpi_Ulnaris xref: SCTID:244992008 is_a: UBERON:0000311 ! extensor muscle is_a: UBERON:0003662 ! implied link automatically realized ! forelimb muscle relationship: part_of UBERON:0001462 ! wrist [Term] id: UBERON:0001527 name: abductor pollicis longus alt_id: UBERON:FMA_38515-MA_0002266 def: "The Abductor pollicis longus lies immediately below the Supinator and is sometimes united with it. [WP,unvetted]." [Wikipedia:Abductor_pollicis_longus_muscle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "abductor pollicis longus muscle" RELATED [Wikipedia:Abductor_pollicis_longus_muscle] xref: FMA:38515 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Gray1231.png/200px-Gray1231.png xref: MA:0002266 xref: ncithesaurus:Abductor_Pollicis_Longus is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0001528 name: radio-ulnar joint alt_id: UBERON:FMA_38863-MA_0000462 def: "The forearm is the structure and distal region of the upper limb, between the elbow and the wrist.. The term forearm is used in anatomy to distinguish it from the arm which is often misused to describe the entire appendage of the upper limb and technically means only the region of the upper arm whereas the lower 'arm' is called the forearm. It is homologous to the leg that lies between the knee and the ankle joints. [WP,unvetted]." [Wikipedia:Radio-ulnar_joint] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "radioulnar joint" EXACT [] xref: EMAPA:19206 xref: FMA:38863 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/50/Forearm_labeled.png/200px-Forearm_labeled.png xref: MA:0000462 xref: OpenCyc:Mx4rvlO2nJwpEbGdrcN5Y29ycA xref: SCTID:264167003 is_a: UBERON:0001491 ! wrist joint [Term] id: UBERON:0001529 name: brachiocephalic artery alt_id: UBERON:FMA_3932-MA_0001922 def: "The brachiocephalic artery (or brachiocephalic trunk or innominate artery) is an artery of the mediastinum that supplies blood to the right arm and the head and neck. It is the first branch of the aortic arch, and soon after it emerges, the brachiocephalic artery divides into the right common carotid artery and the right subclavian artery. There is no brachiocephalic artery for the left side of the body. The left common carotid, and the left subclavian artery, come directly off the aortic arch. However, there are two brachiocephalic veins. [WP,unvetted]." [Wikipedia:Brachiocephalic_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "brachiocephalic trunk" EXACT [MA:0001922] synonym: "innominate artery" RELATED [] synonym: "truncus brachiocephalicus" EXACT [FMA:3932, FMA:TA] xref: EFO:0002550 xref: EHDAA2:0000835 xref: EMAPA:17615 xref: FMA:3932 xref: GAID:476 xref: galen:BrachioCephalicArtery xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Gray506.svg/200px-Gray506.svg.png xref: MA:0001922 xref: MESH:A.07.231.114.145 xref: ncithesaurus:Innominate_Artery xref: OpenCyc:Mx4rv9mMTpwpEbGdrcN5Y29ycA xref: SCTID:244244002 is_a: UBERON:0004573 ! systemic artery relationship: part_of UBERON:0007204 ! brachiocephalic vasculature [Term] id: UBERON:0001530 name: common carotid artery alt_id: UBERON:FMA_3939-ZFA_0000097 def: "Artery originating at the junction of the first two aortic arches and supplying the anterior brain. Kimmel et al, 1995." [Wikipedia:Common_carotid_artery, ZFIN:curator] comment: FMA says exact synonym with carotid subset: uberon_slim synonym: "carotid artery" BROAD [FMA:3939] synonym: "trunk of common carotid tree" EXACT [] xref: EHDAA:7331 xref: EHDAA2:0000306 xref: EMAPA:17855 xref: FMA:3939 xref: GAID:479 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Gray506.svg/200px-Gray506.svg.png xref: MA:0001926 xref: MESH:A.07.231.114.186.200 xref: ncithesaurus:Common_Carotid_Artery xref: OG:0000272 xref: SCTID:362041005 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0005396 ! carotid artery is_a: UBERON:0005911 ! implied link automatically realized ! endo-epithelium relationship: develops_from UBERON:0004363 {source="Wikipedia"} ! aortic arch [Term] id: UBERON:0001531 name: right common carotid artery alt_id: UBERON:FMA_3941-MA_0001928 def: "In human anatomy, the common carotid artery is an artery that supplies the head and neck with oxygenated blood; it divides in the neck to form the external and internal carotid arteries. [WP,unvetted]." [Wikipedia:Right_common_carotid_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "trunk of right common carotid tree" EXACT [] xref: FMA:3941 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Gray506.svg/200px-Gray506.svg.png xref: MA:0001928 xref: ncithesaurus:Right_Common_Carotid_Artery xref: OpenCyc:Mx4rtW9-AqgEEdudWQACs5b6Bw xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rvg7rcJwpEbGdrcN5Y29ycA xref: SCTID:362042003 is_a: UBERON:0001530 ! common carotid artery [Term] id: UBERON:0001532 name: internal carotid artery alt_id: UBERON:FMA_3947-MA_0001930-XAO_0000366-ZFA_0005081 def: "In human anatomy, the internal carotid artery is a major artery of the head and neck that helps supply blood to the brain. [WP,unvetted]." [Wikipedia:Internal_carotid_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "ICA" RELATED [] xref: AAO:0011054 xref: BTO:0004697 xref: EFO:0001952 xref: EHDAA:408 xref: EHDAA:6389 xref: EHDAA2:0000873 xref: EMAPA:16328 xref: EMAPA:18612 xref: FMA:3947 xref: GAID:481 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9c/Gray513.png/200px-Gray513.png xref: MA:0001930 xref: MESH:A.07.231.114.186.200.230 xref: ncithesaurus:Internal_Carotid_Artery xref: OG:0000267 xref: OpenCyc:Mx4rvYx8KZwpEbGdrcN5Y29ycA xref: SCTID:362045001 xref: TAO:0005081 xref: XAO:0000366 xref: ZFA:0005081 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0005396 ! carotid artery is_a: UBERON:0005911 ! implied link automatically realized ! endo-epithelium relationship: develops_from UBERON:0004363 {source="Wikipedia"} ! aortic arch relationship: part_of UBERON:0001530 ! common carotid artery [Term] id: UBERON:0001533 name: subclavian artery alt_id: UBERON:FMA_3951-MA_0002045-ZFA_0005086 def: "In human anatomy, the subclavian artery is a major artery of the upper thorax that mainly supplies blood to the head and arms. It is located below the clavicle, hence the name. There is a left subclavian and a right subclavian. On the left side of the body, the subclavian comes directly off the arch of aorta. On the right side of the body, the subclavian arises from the relatively short brachiocephalic artery (trunk) when it bifurcates into the subclavian and the right common carotid artery. The usual branches of the subclavian on both sides of the body are the vertebral artery, the internal thoracic artery, the thyrocervical trunk, the costocervical trunk and the dorsal scapular artery. The subclavian becomes the axillary artery at the lateral border of the first rib[WP]. The pectoral (subclavian) arteries originate from the dorsal aorta and takes the blood outward into the fin from the paired portion of the dorsal aorta posterior to the last aortic arch. Kimmel et al. 1993" [Wikipedia:Subclavian_artery, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "arterial tree of upper limb" EXACT [] synonym: "PA" RELATED [] synonym: "pectoral artery" EXACT [] synonym: "subclavian arterial tree" EXACT [] xref: AAO:0010232 xref: EHDAA:4357 xref: EHDAA2:0001933 xref: EMAPA:17617 xref: FMA:3951 xref: GAID:511 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Gray506.svg/200px-Gray506.svg.png xref: MA:0002045 xref: MESH:A.07.231.114.839 xref: ncithesaurus:Subclavian_Artery xref: OpenCyc:Mx4rvp8u1JwpEbGdrcN5Y29ycA xref: SCTID:265790007 xref: TAO:0005086 xref: XAO:0000365 xref: ZFA:0005086 is_a: UBERON:0003834 ! implied link automatically realized ! thoracic segment blood vessel is_a: UBERON:0004573 ! systemic artery relationship: part_of UBERON:0000915 ! thoracic segment of trunk [Term] id: UBERON:0001534 name: right subclavian artery alt_id: UBERON:FMA_3953-MA_0002047 def: "In human anatomy, the subclavian artery is a major artery of the upper thorax that mainly supplies blood to the head and arms. It is located below the clavicle, hence the name. There is a left subclavian and a right subclavian. On the left side of the body, the subclavian comes directly off the arch of aorta. On the right side of the body, the subclavian arises from the relatively short brachiocephalic artery (trunk) when it bifurcates into the subclavian and the right common carotid artery. The usual branches of the subclavian on both sides of the body are the vertebral artery, the internal thoracic artery, the thyrocervical trunk, the costocervical trunk and the dorsal scapular artery. The subclavian becomes the axillary artery at the lateral border of the first rib. [WP,unvetted]." [Wikipedia:Right_subclavian_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: EHDAA2:0004514 xref: FMA:3953 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Gray506.svg/200px-Gray506.svg.png xref: MA:0002047 xref: ncithesaurus:Right_Subclavian_Artery xref: OpenCyc:Mx4rtW7hwqgEEdudWQACs5b6Bw xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rvp8u1JwpEbGdrcN5Y29ycA xref: SCTID:244246000 is_a: UBERON:0001533 ! subclavian artery [Term] id: UBERON:0001535 name: vertebral artery alt_id: UBERON:FMA_3956-MA_0002077-ZFA_0005033 def: "The vertebral arteries are branches of the subclavian arteries. The two vertebral arteries and the basilar artery are sometimes together called the vertebrobasilar system, which supplies blood to the posterior part of circle of Willis and anastomoses with blood supplied to the anterior part of the circle of Willis from the carotid arteries. [WP,unvetted]." [Wikipedia:Vertebral_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core xref: EHDAA:5328 xref: EHDAA2:0002192 xref: EMAPA:17314 xref: FMA:3956 xref: GAID:518 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/ff/Vertebral_artery.png/200px-Vertebral_artery.png xref: MA:0002077 xref: MESH:A.07.231.114.955 xref: ncithesaurus:Vertebral_Artery xref: OG:0000263 xref: OpenCyc:Mx4rvg_ir5wpEbGdrcN5Y29ycA xref: SCTID:181323003 xref: TAO:0005033 xref: ZFA:0005033 is_a: UBERON:0001637 ! artery is_a: UBERON:0003834 ! implied link automatically realized ! thoracic segment blood vessel relationship: part_of UBERON:0001533 ! subclavian artery relationship: supplies UBERON:0002240 ! spinal cord [Term] id: UBERON:0001536 name: left common carotid artery alt_id: UBERON:FMA_4058-MA_0001927 def: "In human anatomy, the common carotid artery is an artery that supplies the head and neck with oxygenated blood; it divides in the neck to form the external and internal carotid arteries. [WP,unvetted]." [Wikipedia:Left_common_carotid_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "trunk of left common carotid tree" EXACT [] xref: FMA:4058 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Gray506.svg/200px-Gray506.svg.png xref: MA:0001927 xref: ncithesaurus:Left_Common_Carotid_Artery xref: OpenCyc:Mx4rdz4xcLVIEduAAAAOpmP6tw xref: OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rvg7rcJwpEbGdrcN5Y29ycA xref: SCTID:362043008 is_a: UBERON:0001530 ! common carotid artery [Term] id: UBERON:0001537 name: anterior tibial artery alt_id: UBERON:FMA_43894-MA_0002574 def: "The anterior tibial artery of the lower limb carries blood to the anterior compartment of the leg and dorsal surface of the foot, from the popliteal artery. It is accompanied by a deep vein, the anterior tibial vein, along its course. It crosses the anterior aspect of the ankle joint, at which point it becomes the dorsalis pedis artery. [WP,unvetted]." [Wikipedia:Anterior_tibial_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:43894 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Gray1247.png/200px-Gray1247.png xref: MA:0002574 xref: ncithesaurus:Anterior_Tibial_Artery xref: OpenCyc:Mx4rvaHcEZwpEbGdrcN5Y29ycA xref: SCTID:181357006 is_a: UBERON:0007610 ! tibial artery [Term] id: UBERON:0001538 name: posterior tibial artery alt_id: UBERON:FMA_43895-MA_0002575 def: "The posterior tibial artery of the lower limb carries blood to the posterior compartment of the leg and plantar surface of the foot, from the popliteal artery. It is accompanied by a deep vein, the posterior tibial vein, along its course. [WP,unvetted]." [Wikipedia:Posterior_tibial_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:43895 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Gray1247.png/200px-Gray1247.png xref: MA:0002575 xref: ncithesaurus:Posterior_Tibial_Artery xref: OpenCyc:Mx4rwLSaQ5wpEbGdrcN5Y29ycA xref: SCTID:181358001 is_a: UBERON:0007610 ! tibial artery [Term] id: UBERON:0001539 name: dorsalis pedis artery alt_id: UBERON:FMA_43915-MA_0001942 def: "In human anatomy, the dorsalis pedis artery (dorsal artery of foot), is a blood vessel of the lower limb that carries oxygenated blood to the dorsal surface of the foot. It arises at the anterior aspect of the ankle joint and is a continuation of the anterior tibial artery. It terminates at the proximal part of the first intermetatarsal space, where it divides into two branches, the first dorsal metatarsal artery and the deep plantar artery. Along its course, it is accompanied by a deep vein, the dorsalis pedis vein. [WP,unvetted]." [Wikipedia:Dorsalis_pedis_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "arteria dorsalis pedis" EXACT [FMA:43915, FMA:TA] synonym: "dorsal artery of foot" EXACT [] xref: FMA:43915 xref: galen:DorsalisPedisArtery xref: MA:0001942 xref: ncithesaurus:Dorsalis_Pedis_Artery xref: SCTID:181362007 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001540 name: peroneal artery alt_id: UBERON:FMA_43921-MA_0002018 def: "In anatomy, the fibular artery (also known as the peroneal artery) supplies blood to the lateral compartment of the leg and is typically a branch of posterior tibial artery. [WP,unvetted]." [Wikipedia:Peroneal_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "arteria fibularis" EXACT [FMA:43921, FMA:TA] synonym: "fibular artery" EXACT [] xref: FMA:43921 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/72/Fibular_artery.png/200px-Fibular_artery.png xref: MA:0002018 xref: ncithesaurus:Peroneal_Artery xref: OpenCyc:Mx4rwSO_s5wpEbGdrcN5Y29ycA xref: SCTID:181359009 is_a: UBERON:0001637 ! artery is_a: UBERON:0003516 ! implied link automatically realized ! hindlimb blood vessel relationship: part_of UBERON:0001538 ! posterior tibial artery [Term] id: UBERON:0001541 name: medial plantar artery alt_id: UBERON:FMA_43925-MA_0001997 def: "The medial plantar artery (internal plantar artery), much smaller than the lateral, passes forward along the medial side of the foot. It is at first situated above the Abductor hallucis, and then between it and the Flexor digitorum brevis, both of which it supplies. At the base of the first metatarsal bone, where it is much diminished in size, it passes along the medial border of the first toe, anastomosing with the first dorsal metatarsal artery. Small superficial digital branches accompany the digital branches of the medial plantar nerve and join the plantar metatarsal arteries of the first three spaces. [WP,unvetted]." [Wikipedia:Medial_plantar_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:43925 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3e/Gray555.png/200px-Gray555.png xref: MA:0001997 xref: ncithesaurus:Medial_Plantar_Artery xref: SCTID:181360004 is_a: UBERON:0001637 ! artery is_a: UBERON:0003516 ! implied link automatically realized ! hindlimb blood vessel relationship: part_of UBERON:0001538 ! posterior tibial artery [Term] id: UBERON:0001542 name: inguinal lymph node alt_id: UBERON:FMA_44226-MA_0000737 def: "A lymph node in the inguinal region." [Wikipedia:Inguinal_lymph_node] comment: TODO - superficial/deep subset: uberon_slim xref: FMA:44226 xref: MA:0000737 xref: ncithesaurus:Inguinal_Lymph_Node xref: SCTID:181762005 is_a: UBERON:0003968 ! peripheral lymph node [Term] id: UBERON:0001543 name: popliteal lymph node alt_id: UBERON:FMA_44227-MA_0000738 def: "The popliteal lymph nodes, small in size and some six or seven in number, are imbedded in the fat contained in the popliteal fossa. One lies immediately beneath the popliteal fascia, near the terminal part of the small saphenous vein, and drains the region from which this vein derives its tributaries. Another is placed between the popliteal artery and the posterior surface of the knee-joint; it receives the lymphatic vessels from the knee-joint together with those which accompany the genicular arteries. The others lie at the sides of the popliteal vessels, and receive as efferents the trunks which accompany the anterior and posterior tibial vessels. The efferents of the popliteal glands pass almost entirely alongside the femoral vessels to the deep inguinal glands, but a few may accompany the great saphenous vein, and end in the glands of the superficial subinguinal group. [WP,unvetted]." [Wikipedia:Popliteal_lymph_node] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:44227 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Gray609.png/200px-Gray609.png xref: MA:0000738 xref: ncithesaurus:Popliteal_Lymph_Node xref: SCTID:279156002 is_a: UBERON:0003968 ! peripheral lymph node [Term] id: UBERON:0001544 name: popliteal vein alt_id: UBERON:FMA_44327-MA_0002197 def: "The popliteal vein course runs alongside the popliteal artery but carries the blood from the knee joint and muscles in the thigh and calf back to the heart. Its origin is defined by the junction of the posterior tibial vein and anterior tibial vein. It drains the peroneal vein before reaching the knee joint and turns into the femoral vein when leaving the adductor canal (also known as Hunter's canal). The popliteal artery extends from the femoral artery behind the popliteal fossa which is the space behind the knee. [WP,unvetted]." [Wikipedia:Popliteal_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:44327 xref: GAID:537 xref: galen:PoplitealVein xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Gray609.png/200px-Gray609.png xref: MA:0002197 xref: MESH:A.07.231.908.641 xref: ncithesaurus:Popliteal_Vein xref: OpenCyc:Mx4rv8Ch-JwpEbGdrcN5Y29ycA xref: SCTID:281065001 is_a: UBERON:0001638 ! vein is_a: UBERON:0003232 ! implied link automatically realized ! epithelium of knee is_a: UBERON:0003503 ! implied link automatically realized ! leg blood vessel relationship: part_of UBERON:0001465 ! knee relationship: tributary_of UBERON:0001361 {source="FMA/obol"} ! femoral vein [Term] id: UBERON:0001545 name: anterior tibial vein alt_id: UBERON:FMA_44331-MA_0002244 def: "In human anatomy, the anterior tibial vein of the lower limb carries blood from the anterior compartment of the leg to the popliteal vein which is forms when it joins with the posterior tibial vein. Like most deep veins, the anterior tibial vein is accompanied by an artery of the same name, the anterior tibial artery, along its course. [WP,unvetted]." [Wikipedia:Anterior_tibial_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:44331 xref: galen:AnteriorTibialVein xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4e/Gray440_color.png/200px-Gray440_color.png xref: MA:0002244 xref: ncithesaurus:Anterior_Tibial_Vein xref: OpenCyc:Mx4rvXYDl5wpEbGdrcN5Y29ycA xref: SCTID:281066000 is_a: UBERON:0001638 ! vein is_a: UBERON:0003503 ! implied link automatically realized ! leg blood vessel relationship: part_of UBERON:0000978 ! leg relationship: tributary_of UBERON:0001361 {source="FMA/obol"} ! femoral vein relationship: tributary_of UBERON:0001544 {source="FMA/obol"} ! popliteal vein [Term] id: UBERON:0001546 name: posterior tibial vein alt_id: UBERON:FMA_44332-MA_0002245 def: "In anatomy, the posterior tibial vein of the lower limb carries blood from the posterior compartment and plantar surface of the foot to the popliteal vein which it forms when it joins with the anterior tibial vein. Like most deep veins, the posterior tibial vein is accompanied by an artery of the same name, the posterior tibial artery, along its course. [WP,unvetted]." [Wikipedia:Posterior_tibial_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:44332 xref: galen:PosteriorTibialVein xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c7/Gray583.png/200px-Gray583.png xref: MA:0002245 xref: ncithesaurus:Posterior_Tibial_Vein xref: OpenCyc:Mx4rwA9GD5wpEbGdrcN5Y29ycA xref: SCTID:281067009 is_a: UBERON:0001638 ! vein relationship: tributary_of UBERON:0001361 {source="FMA/obol"} ! femoral vein relationship: tributary_of UBERON:0001544 {source="FMA/obol"} ! popliteal vein [Term] id: UBERON:0001547 name: small saphenous vein alt_id: UBERON:FMA_44333-MA_0002217 def: "The small saphenous vein (also lesser saphenous vein), is a relatively large vein of the superficial posterior leg. [WP,unvetted]." [Wikipedia:Small_saphenous_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "lesser saphenous vein" EXACT [] synonym: "short saphenous vein" EXACT [] synonym: "vena saphena parva" EXACT [FMA:44333, FMA:TA] xref: BTO:0003272 xref: FMA:44333 xref: galen:LesserSaphenousVein xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/62/Gray582.png/200px-Gray582.png xref: MA:0002217 xref: ncithesaurus:Short_Saphenous_Vein xref: SCTID:181404009 is_a: UBERON:0007318 ! saphenous vein relationship: tributary_of UBERON:0001361 {source="FMA/obol"} ! femoral vein relationship: tributary_of UBERON:0001544 {source="FMA/obol"} ! popliteal vein [Term] id: UBERON:0001548 name: lateral marginal vein alt_id: UBERON:FMA_44359-MA_0002160 comment: This class was created automatically from a combination of ontologies synonym: "lateral marginal vein of foot" EXACT [] synonym: "vena marginalis lateralis" EXACT [] synonym: "vena marginalis lateralis pedis" EXACT [FMA:44359, FMA:TA] xref: FMA:44359 xref: MA:0002160 is_a: UBERON:0001638 ! vein relationship: tributary_of UBERON:0001361 {source="FMA/obol"} ! femoral vein relationship: tributary_of UBERON:0001544 {source="FMA/obol"} ! popliteal vein relationship: tributary_of UBERON:0001547 {source="FMA/obol"} ! small saphenous vein [Term] id: UBERON:0001549 name: dorsal metatarsal vein alt_id: UBERON:FMA_44377-MA_0002105 def: "The dorsal metatarsal veins are veins which drain the metatarsus of the foot. [WP,unvetted]." [Wikipedia:Dorsal_metatarsal_veins] comment: This class was created automatically from a combination of ontologies synonym: "metatarsal vein" EXACT [] xref: FMA:44377 xref: MA:0002105 xref: ncithesaurus:Dorsal_Metatarsal_Vein is_a: UBERON:0001638 ! vein relationship: tributary_of UBERON:0001361 {source="FMA/obol"} ! femoral vein relationship: tributary_of UBERON:0001544 {source="FMA/obol"} ! popliteal vein relationship: tributary_of UBERON:0001547 {source="FMA/obol"} ! small saphenous vein [Term] id: UBERON:0001550 name: medial marginal vein alt_id: UBERON:FMA_44420-MA_0002171 comment: This class was created automatically from a combination of ontologies synonym: "medial marginal vein of foot" EXACT [] synonym: "vena marginalis medialis" EXACT [] synonym: "vena marginalis medialis pedis" EXACT [FMA:44420, FMA:TA] xref: FMA:44420 xref: MA:0002171 is_a: UBERON:0001638 ! vein relationship: tributary_of UBERON:0001361 {source="FMA/obol"} ! femoral vein relationship: tributary_of UBERON:0001363 {source="FMA/obol"} ! great saphenous vein [Term] id: UBERON:0001551 name: sural vein alt_id: UBERON:FMA_44561-MA_0002231 comment: This class was created automatically from a combination of ontologies xref: FMA:44561 xref: MA:0002231 is_a: UBERON:0001638 ! vein relationship: tributary_of UBERON:0001361 {source="FMA/obol"} ! femoral vein relationship: tributary_of UBERON:0001544 {source="FMA/obol"} ! popliteal vein [Term] id: UBERON:0001552 name: arcuate artery alt_id: UBERON:FMA_44594-MA_0002583 def: "One of the curved arteries at the corticomedullary border of the kidney that arise from the interlobar arteries and give rise to the interlobular arteries." [MP:0011315, Wikipedia:Arcuate_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "kidney arcuate artery" EXACT [MP:0011315] xref: EMAPA:28215 xref: FMA:44594 xref: MA:0002583 xref: SCTID:244331005 is_a: UBERON:0001637 ! artery is_a: UBERON:0005268 ! implied link automatically realized ! renal cortex artery relationship: part_of UBERON:0001225 ! cortex of kidney [Term] id: UBERON:0001553 name: medial tarsal artery alt_id: UBERON:FMA_44598-MA_0001998 comment: This class was created automatically from a combination of ontologies xref: FMA:44598 xref: MA:0001998 xref: ncithesaurus:Medial_Tarsal_Artery xref: SCTID:67925000 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001554 name: skin of hip alt_id: UBERON:FMA_45282-MA_0000658 def: "A zone of skin that is part of a hip [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "hip region zone of skin" EXACT [OBOL:automatic] synonym: "hip skin" EXACT [] synonym: "hip zone of skin" EXACT [OBOL:automatic] synonym: "regio coxae zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of hip" EXACT [OBOL:automatic] synonym: "zone of skin of hip region" EXACT [OBOL:automatic] synonym: "zone of skin of regio coxae" EXACT [OBOL:automatic] xref: EMAPA:18148 xref: FMA:45282 xref: MA:0000658 xref: SCTID:181518004 is_a: UBERON:0001419 ! skin of limb relationship: part_of UBERON:0001464 intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0001464 ! hip relationship: part_of UBERON:0001464 ! hip [Term] id: UBERON:0001555 name: digestive tract alt_id: UBERON:FMA_45615-MA_0000917-ZFA_0000112 def: "Tube extending from the mouth to the anus." [http://en.wikipedia.org/wiki/Talk\:Human_gastrointestinal_tract, http://sourceforge.net/tracker/?func=detail&atid=440764&aid=2991587&group_id=36855] comment: GO says gut is region of DT, from intestines to anus. ZFA treats as synonym for alimentary canal, and treats it as the sum of DT + organs (ZF has no term from stomach). GO says intestines to anus (excludes stomach and esophagus). MA appears to agree with GO (stomach and esophagus are not parts). FMA includes stomach and esophagus as parts of gut -- the FMA divides gut into lower and upper GI tract; it's not clear if this is exhaustive (small intestine is in neither), but lower GI tract may correspond better to the GO definition. NOTE: GO now changed, see sf id in def xref. Note that FMA also has a term 'gastrointestinal tract', but this includes the liver subset: uberon_slim subset: vertebrate_core synonym: "alimentary canal" EXACT [] synonym: "digestive tube" RELATED [] synonym: "enteric tract" EXACT [ZFA:0000112] synonym: "gut" BROAD [] synonym: "gut tube" RELATED [] xref: AAO:0010023 xref: BILA:0000083 xref: BTO:0000511 xref: BTO:0000545 xref: EHDAA:518 xref: EHDAA2:0000726 xref: EMAPA:16247 xref: FBbt:00003125 xref: FMA:45615 xref: galen:AlimentaryTract xref: OG:0000309 xref: OpenCyc:Mx4rvVi0GpwpEbGdrcN5Y29ycA xref: TAO:0000112 xref: TGMA:0001819 xref: WBbt:0005743 xref: ZFA:0000112 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: develops_from UBERON:0007026 ! primitive gut relationship: part_of UBERON:0001007 ! digestive system [Term] id: UBERON:0001556 name: lower urinary tract alt_id: UBERON:FMA_45659-MA_0002636 def: "Subdivision of urinary system which consists of the urinary bladder and the urethra." [] comment: TODO - add superclass urinary tract? subset: uberon_slim xref: FMA:45659 xref: galen:LowerUrinaryTract xref: MA:0002636 xref: SCTID:181420004 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0001008 ! excretory system [Term] id: UBERON:0001557 name: upper respiratory tract alt_id: UBERON:FMA_45661-MA_0000442 def: "Subdivision of respiratory system which consists of the nose, nasopharynx, oropharynx and larynx[FMA]" [FMA:FMA, Wikipedia:Upper_respiratory_tract] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: EHDAA2:0002136 xref: EMAPA:17669 xref: FMA:45661 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Illu_conducting_passages.jpg/200px-Illu_conducting_passages.jpg xref: MA:0000442 xref: OG:0000406 xref: OpenCyc:Mx4rtT2HwgJMEdyAAADggVbxzQ xref: SCTID:361381009 is_a: UBERON:0000072 ! segment of respiratory tract [Term] id: UBERON:0001558 name: lower respiratory tract alt_id: UBERON:FMA_45662-MA_0000435 def: "Subdivision of respiratory system which consists of the tracheobronchial tree, right lung and left lung.[FMA]" [FMA:FMA, Wikipedia:Lower_respiratory_tract] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: EHDAA2:0001036 xref: EMAPA:16738 xref: FMA:45662 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Illu_conducting_passages.jpg/200px-Illu_conducting_passages.jpg xref: MA:0000435 xref: OG:0000382 xref: OpenCyc:Mx4rQRqjUgAKEdyHxgDggVfs8g xref: SCTID:281488008 is_a: UBERON:0000072 ! segment of respiratory tract [Term] id: UBERON:0001559 name: head of organ alt_id: UBERON:FMA_45729-MA_0000581 comment: incorrect grouping synonym: "head organ" EXACT [MA:0000581] synonym: "organ head" EXACT [] xref: FMA:45729 xref: MA:0000581 is_obsolete: true [Term] id: UBERON:0001560 name: neck of organ alt_id: UBERON:FMA_45733-MA_0000589 synonym: "organ neck" EXACT [] xref: FMA:45733 is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0001561 name: subcostal artery alt_id: UBERON:FMA_4613-MA_0002048 def: "The subcostal arteries, so named because they lie below the last ribs, constitute the lowest pair of branches derived from the thoracic aorta, and are in series with the intercostal arteries. Each passes along the lower border of the twelfth rib behind the kidney and in front of the Quadratus lumborum muscle, and is accompanied by the twelfth thoracic nerve. It then pierces the posterior aponeurosis of the Transversus abdominis, and, passing forward between this muscle and the Obliquus internus, anastomoses with the superior epigastric, lower intercostal, and lumbar arteries. Each subcostal artery gives off a posterior branch which has a similar distribution to the posterior ramus of an intercostal artery. [WP,unvetted]." [Wikipedia:Subcostal_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: EMAPA:19097 xref: FMA:4613 xref: MA:0002048 xref: ncithesaurus:Subcostal_Artery xref: SCTID:244243008 is_a: UBERON:0004573 ! systemic artery [Term] id: UBERON:0001562 name: digastric alt_id: UBERON:FMA_46291-MA_0002288 def: "The digastric muscle (also digastricus) (named digastric as it has two bellies) is a small muscle located under the jaw. It lies below the body of the mandible, and extends, in a curved form, from the mastoid process to the symphysis menti. It belongs to the suprahyoid muscles group. A broad aponeurotic layer is given off from the tendon of the digastricus on either side, to be attached to the body and greater cornu of the hyoid bone; this is termed the suprahyoid aponeurosis. [WP,unvetted]." [Wikipedia:Digastric_muscle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "digastric muscle" RELATED [Wikipedia:Digastric_muscle] synonym: "musculus digastricus" RELATED [Wikipedia:Digastric_muscle] xref: EMAPA:25134 xref: FMA:46291 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/26/Digastricus.png/200px-Digastricus.png xref: MA:0002288 xref: ncithesaurus:Digastric_Muscle xref: SCTID:244825002 is_a: UBERON:0002377 ! muscle of neck [Term] id: UBERON:0001563 name: longus capitis alt_id: UBERON:FMA_46308-MA_0002340 def: "The longus capitis (rectus capitis anticus major), broad and thick above, narrow below, arises by four tendinous slips, from the anterior tubercles of the transverse processes of the third, fourth, fifth, and sixth cervical vertebrae, and ascends, converging toward its fellow of the opposite side, to be inserted into the inferior surface of the basilar part of the occipital bone. It is innervated by a branch of cervical plexus. [WP,unvetted]." [Wikipedia:Longus_capitis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "longus capitus muscle" RELATED [Wikipedia:Longus_capitis_muscle] synonym: "rectus capitis anticus major" RELATED [Wikipedia:Longus_capitis_muscle] xref: EMAPA:25131 xref: FMA:46308 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Longus_capitis.png/200px-Longus_capitis.png xref: MA:0002340 xref: ncithesaurus:Longus_Capitis is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0001564 name: mylohyoid alt_id: UBERON:FMA_46320-MA_0002344 def: "The mylohyoid muscle is a muscle running from the mandible to the hyoid bone, forming the floor of the oral cavity. These muscles are mesodermal in origin." [Wikipedia:Mylohyoid_muscle] subset: uberon_slim synonym: "musculus mylohyoideus" RELATED [Wikipedia:Mylohyoid_muscle] synonym: "mylohyoid muscle" RELATED [Wikipedia:Mylohyoid_muscle] synonym: "mylohyoideus" RELATED [Wikipedia:Mylohyoid_muscle] synonym: "mylohyoideus muscle" RELATED [Wikipedia:Mylohyoid_muscle] xref: FMA:46320 xref: MA:0002344 xref: ncithesaurus:Mylohyoid is_a: UBERON:0002377 ! muscle of neck relationship: develops_from UBERON:0000926 {source="Wikipedia"} ! mesoderm [Term] id: UBERON:0001565 name: geniohyoid alt_id: UBERON:FMA_46325-MA_0002308 def: "The Geniohyoid muscle is a narrow muscle situated superior to the medial border of the mylohyoid muscle. [WP,unvetted]." [Wikipedia:Geniohyoid_muscle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "geniohyoid muscle" RELATED [Wikipedia:Geniohyoid_muscle] synonym: "geniohyoideus" RELATED [Wikipedia:Geniohyoid_muscle] synonym: "geniohyoideus muscle" RELATED [Wikipedia:Geniohyoid_muscle] xref: AAO:0010655 xref: FMA:46325 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2c/Geniohyoid_muscle.PNG/200px-Geniohyoid_muscle.PNG xref: MA:0002308 xref: ncithesaurus:Geniohyoid xref: XAO:0004127 is_a: UBERON:0002377 ! muscle of neck [Term] id: UBERON:0001566 name: cricothyroid muscle alt_id: UBERON:FMA_46417-MA_0002284 def: "The cricothyroid muscle attaches to the anterolateral aspect of the cricoid and the inferior cornu and lower lamina of the thyroid cartilage, tilting the thyroid forwards and tensing the vocal cords. It is the only laryngeal muscle supplied by the external branch of the superior laryngeal nerve (rather than the recurrent laryngeal nerve). [WP,unvetted]." [Wikipedia:Cricothyroid_muscle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "cricothyroid" EXACT [] synonym: "musculus cricothyroideus" EXACT [FMA:46417, FMA:TA] xref: EMAPA:19270 xref: FMA:46417 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Musculuscricothyreoideus.png/200px-Musculuscricothyreoideus.png xref: MA:0002284 xref: ncithesaurus:Cricothyroid_Muscle xref: SCTID:244809007 is_a: UBERON:0006328 ! laryngeal intrinsic muscle [Term] id: UBERON:0001567 name: cheek alt_id: UBERON:FMA_46476-MA_0002475 def: "Cheeks constitute the area of the face below the eyes and between the nose and the left or right ear. It is fleshy in humans and other mammals, the skin being suspended by the chin and the jaws, and forming the lateral wall of the human mouth, visibly touching the cheekbone below the eye. In vertebrates, markings on the cheek area (malar stripes/spots/... ), particularly immediately beneath the eye, often serve as important distinguishing features between species or individuals. 'Buccal' means relating to the cheek. In humans, the region is innervated by the buccal nerve. The inside of the cheek (forming part of the mouth cavity) is lined with a mucous membrane. It is the most common location from which a DNA sample can be taken (during a cheek swab). The cheeks are covered externally by hairy skin, and internally by stratified squamous epithelium. This is mostly smooth, but may have aborally directed papillae . The mucosa is supplied with secretions from the Buccal glands, which are arranged in superior and inferior groups. In carnivores, the superior buccal gland is large and discrete: the Zygomatic gland. During mastication (chewing), the cheeks and tongue between them serve to keep the food between the teeth. [WP,unvetted]." [Wikipedia:Cheek] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: BTO:0001754 xref: FMA:46476 xref: GAID:65 xref: galen:Cheek xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a9/Chica_cachetona.jpg/200px-Chica_cachetona.jpg xref: MA:0002475 xref: MESH:A.01.456.505.173 xref: ncithesaurus:Cheek xref: OpenCyc:Mx4rvVi5WZwpEbGdrcN5Y29ycA xref: SCTID:182325008 is_a: UBERON:0001444 ! subdivision of head relationship: part_of UBERON:0001456 ! face relationship: part_of UBERON:0004089 ! midface [Term] id: UBERON:0001568 name: muscle of larynx alt_id: UBERON:FMA_46562-MA_0001768 def: "the muscles associated with the larynx." [MP:0002263] comment: This class was created automatically from a combination of ontologies synonym: "laryngeal muscle" EXACT [] synonym: "larynx muscle" EXACT [] synonym: "larynx muscle organ" EXACT [OBOL:automatic] synonym: "muscle organ of larynx" EXACT [OBOL:automatic] xref: BTO:0001626 xref: FMA:46562 xref: GAID:144 xref: MA:0001768 xref: MESH:A.02.633.567.500 xref: ncithesaurus:Laryngeal_Muscle xref: SCTID:181744001 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002377 ! muscle of neck is_a: UBERON:0003831 ! implied link automatically realized ! respiratory system muscle relationship: part_of UBERON:0001737 intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0001737 ! larynx relationship: part_of UBERON:0001737 ! larynx [Term] id: UBERON:0001569 name: constrictor muscle of pharynx alt_id: UBERON:FMA_46620-MA_0002278 def: "The superior pharyngeal constrictor muscle is a quadrilateral muscle, thinner and paler than the inferior pharyngeal constrictor muscle and middle pharyngeal constrictor muscle. [WP,unvetted]." [Wikipedia:Constrictor_muscle_of_pharynx] comment: TODO - evaluate taxonomic specificity - functional definition? subset: uberon_slim synonym: "pharyngeal constrictor muscle" EXACT [] xref: EMAPA:18964 xref: FMA:46620 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ac/Musculusconstrictorpharyngissuperior.png/200px-Musculusconstrictorpharyngissuperior.png xref: MA:0002278 xref: SCTID:244799007 is_a: UBERON:0000933 ! pharyngeal muscle [Term] id: UBERON:0001570 name: inferior pharyngeal constrictor alt_id: UBERON:FMA_46623-MA_0002279 def: "The Inferior pharyngeal constrictor, the thickest of the three constrictors, arises from the sides of the cricoid and thyroid cartilage. Similarly to the superior and middle pharyngeal constrictor muscles, it is innervated by the vagus nerve (cranial nerve X), specifically, by branches from the pharyngeal plexus and by neuronal branches from the recurrent laryngeal nerve. [WP,unvetted]." [Wikipedia:Inferior_pharyngeal_constrictor] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "constrictor muscle of pharynx inferior" EXACT [] synonym: "inferior constrictor" EXACT [] synonym: "inferior constrictor of pharynx" EXACT [] synonym: "inferior constrictor pharyngeus" EXACT [] synonym: "musculus constrictor pharyngis inferior" EXACT [FMA:46623, FMA:TA] xref: FMA:46623 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/22/Musculusconstrictorpharyngisinferior.png/200px-Musculusconstrictorpharyngisinferior.png xref: MA:0002279 is_a: UBERON:0001569 ! constrictor muscle of pharynx [Term] id: UBERON:0001571 name: genioglossus alt_id: UBERON:FMA_46690-MA_0002307 def: "The genioglossus is a muscle of the human body which runs from the chin to the tongue. [WP,unvetted]." [Wikipedia:Genioglossus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: AAO:0010660 xref: EHDAA:9150 xref: EHDAA2:0000704 xref: EMAPA:18276 xref: EMAPA:18881 xref: FMA:46690 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Genioglossus.png/200px-Genioglossus.png xref: MA:0002307 xref: ncithesaurus:Genioglossus xref: OG:0000847 is_a: UBERON:0001575 ! extrinsic muscle of tongue relationship: part_of UBERON:0001723 ! tongue [Term] id: UBERON:0001572 name: hyoglossus alt_id: UBERON:FMA_46691-MA_0002317 def: "The Hyoglossus, thin and quadrilateral, arises from the side of the body and from the whole length of the greater cornu of the hyoid bone, and passes almost vertically upward to enter the side of the tongue, between the Styloglossus and Longitudinalis inferior. The hyoglossus depresses and retracts the tongue makes the dorsum more convex The fibers arising from the body of the hyoid bone overlap those from the greater cornu. It is important in singing. Structures passing medially to the hyoglossus muscle are the lingual vein and lingual artery. Laterally, in between the hyoglossus muscle and the mylohyoid muscle lay several important structures (from superior in inferior): submandibular gland, submandibular duct, lingual nerve, vena comitans of hypoglossal nerve, and the hypoglossal nerve. Note, posteriorly, the lingual nerve is superior to the submandibular duct and a portion of the submandibular salivary gland protrudes into the space between the hyoglossus and mylohyoid muscles. [WP,unvetted]." [Wikipedia:Hyoglossus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: AAO:0010663 xref: EMAPA:18277 xref: EMAPA:18882 xref: FMA:46691 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Hyoglossus.png/200px-Hyoglossus.png xref: MA:0002317 is_a: UBERON:0001575 ! extrinsic muscle of tongue relationship: part_of UBERON:0001723 ! tongue [Term] id: UBERON:0001573 name: styloglossus alt_id: UBERON:FMA_46692-MA_0002387 def: "The Styloglossus, the shortest and smallest of the three styloid muscles, arises from the anterior and lateral surfaces of the styloid process, near its apex, and from the stylomandibular ligament. Passing downward and forward between the internal and external carotid arteries, it divides upon the side of the tongue near its dorsal surface, blending with the fibers of the Longitudinalis inferior in front of the Hyoglossus; the other, oblique, overlaps the Hyoglossus and decussates with its fibers. [WP,unvetted]." [Wikipedia:Styloglossus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: EMAPA:18279 xref: EMAPA:18884 xref: FMA:46692 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Styloglossus.png/200px-Styloglossus.png xref: MA:0002387 xref: ncithesaurus:Styloglossus is_a: UBERON:0001575 ! extrinsic muscle of tongue relationship: part_of UBERON:0001723 ! tongue [Term] id: UBERON:0001574 name: palatoglossus alt_id: UBERON:FMA_46697-MA_0002351 def: "The palatoglossus, glossopalatinus, or palatoglossal muscle is a small fleshy fasciculus, narrower in the middle than at either end, forming, with the mucous membrane covering its surface, the glossopalatine arch. It arises from the anterior surface of the soft palate, where it is continuous with the muscle of the opposite side, and passing downward, forward, and lateralward in front of the palatine tonsil, is inserted into the side of the tongue, some of its fibers spreading over the dorsum, and others passing deeply into the substance of the organ to intermingle with the Transversus linguæ. [WP,unvetted]." [Wikipedia:Palatoglossus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: EMAPA:18278 xref: EMAPA:18883 xref: FMA:46697 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c7/Gray1028.png/200px-Gray1028.png xref: MA:0002351 is_a: UBERON:0003682 ! palatal muscle [Term] id: UBERON:0001575 name: extrinsic muscle of tongue alt_id: UBERON:FMA_46699-MA_0002296 comment: This class was created automatically from a combination of ontologies synonym: "extrinsic tongue muscle" EXACT [] xref: EHDAA:9148 xref: EHDAA2:0002063 xref: FMA:46699 xref: MA:0002296 xref: OG:0000825 xref: SCTID:244782006 is_a: UBERON:0000378 ! tongue muscle [Term] id: UBERON:0001576 name: intrinsic muscle of tongue alt_id: UBERON:FMA_46701-MA_0002327 comment: This class was created automatically from a combination of ontologies synonym: "intrinsic lingual muscle" EXACT [] synonym: "intrinsic tongue muscle" EXACT [] xref: EHDAA:9152 xref: EHDAA2:0002064 xref: FMA:46701 xref: MA:0002327 xref: OG:0000748 xref: SCTID:244788005 is_a: UBERON:0000378 ! tongue muscle [Term] id: UBERON:0001577 name: muscle of face alt_id: UBERON:FMA_46751-XAO_0001013 def: "The facial muscles are a group of striated muscles innervated by the facial nerve that, among other things, control facial expression. These muscles are also called mimetic muscles. [WP,unvetted]." [Wikipedia:Facial_muscle] comment: Check the MA class cranial/facial muscle subset: uberon_slim synonym: "face muscle" EXACT [] synonym: "face muscle organ" EXACT [OBOL:automatic] synonym: "facial muscle" EXACT [] synonym: "muscle organ of face" EXACT [OBOL:automatic] xref: EMAPA:25133 xref: FMA:46751 xref: GAID:143 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fa/Gray378.png/200px-Gray378.png xref: MA:0000579 xref: MESH:A.02.633.567.400 xref: ncithesaurus:Facial_Muscle xref: SCTID:25903009 xref: XAO:0001013 is_a: UBERON:0002376 ! muscle of head relationship: part_of UBERON:0001456 intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0001456 ! face relationship: part_of UBERON:0004473 ! musculature of face [Term] id: UBERON:0001578 name: orbicularis oculi alt_id: UBERON:FMA_46779-MA_0001254 def: "The 'orbicularis oculi' is a muscle in the face that closes the eyelids. It arises from the nasal part of the frontal bone, from the frontal process of the maxilla in front of the lacrimal groove, and from the anterior surface and borders of a short fibrous band, the medial palpebral ligament. From this origin, the fibers are directed lateralward, forming a broad and thin layer, which occupies the eyelids or palpebræ, surrounds the circumference of the orbit, and spreads over the temple, and downward on the cheek. The palpebral portion of the muscle is thin and pale; it arises from the bifurcation of the medial palpebral ligament, forms a series of concentric curves, and is inserted into the lateral palpebral raphé. The orbital portion is thicker and of a reddish color; its fibers form a complete ellipse without interruption at the lateral palpebral commissure; the upper fibers of this portion blend with the Frontalis and Corrugator. The lacrimal part (Tensor tarsi) is a small, thin muscle, about 6 mm. in breadth and 12 mm. in length, situated behind the medial palpebral ligament and lacrimal sac. It arises from the posterior crest and adjacent part of the orbital surface of the lacrimal bone, and passing behind the lacrimal sac, divides into two slips, upper and lower, which are inserted into the superior and inferior tarsi medial to the puncta lacrimalia; occasionally it is very indistinct. [WP,unvetted]." [Wikipedia:Orbicularis_oculi] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:46779 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e2/Gray379.png/200px-Gray379.png xref: MA:0001254 xref: ncithesaurus:Orbicularis_Oculi xref: SCTID:244726006 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0001577 ! muscle of face relationship: part_of UBERON:0001601 ! extra-ocular muscle [Term] id: UBERON:0001579 name: olfactory nerve alt_id: UBERON:FMA_46787-MA_0001096-XAO_0000426-ZFA_0000249 def: "Segment of neural tree organ which is continuous with the olfactory epithelium and an olfactory bulb. The olfactory nerve supplies the nasal organ." [ISBN:0471209627, Wikipedia:Olfactory_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "CN-I" RELATED [] synonym: "cranial nerve I" RELATED [] synonym: "fila olfactoria" RELATED [BTO:0003648] synonym: "first cranial nerve" EXACT [] synonym: "nerve of smell" RELATED [BTO:0003648] synonym: "nervus olfactorius" RELATED [BTO:0003648] synonym: "nervus olfactorius [i]" EXACT [FMA:46787, FMA:TA] synonym: "olfactory fila" RELATED [BTO:0003648] synonym: "olfactory I" EXACT [EHDAA2:0001293] synonym: "olfactory i nerve" EXACT [] synonym: "Olfactory nerve [I]" EXACT [] xref: AAO:0010088 xref: BTO:0003648 xref: EHDAA:6672 xref: EHDAA2:0001293 xref: EMAPA:17797 xref: FMA:46787 xref: GAID:830 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/be/Gray771.png/200px-Gray771.png xref: MA:0001096 xref: MESH:A.08.800.800.120.640 xref: ncithesaurus:Olfactory_Nerve xref: NIF_GrossAnatomy:birnlex_1319 xref: OG:0000703 xref: OpenCyc:Mx4rvZuXAJwpEbGdrcN5Y29ycA xref: SCTID:180937006 xref: TAO:0000249 xref: XAO:0000426 xref: ZFA:0000249 is_a: UBERON:0001785 ! cranial nerve relationship: develops_from UBERON:0003050 ! olfactory placode [Term] id: UBERON:0001580 name: levator labii superioris alt_id: UBERON:FMA_46805-MA_0002333 def: "The levator labii superioris (or quadratus labii superioris) is a broad sheet, the origin of which extends from the side of the nose to the zygomatic bone. Its medial fibers form the angular head, which arises by a pointed extremity from the upper part of the frontal process of the maxilla and passing obliquely downward and lateralward divides into two slips. One of these is inserted into the greater alar cartilage and skin of the nose; the other is prolonged into the lateral part of the upper lip, blending with the infraorbital head and with the Orbicularis oris. The intermediate portion or infraorbital head arises from the lower margin of the orbit immediately above the infraorbital foramen, some of its fibers being attached to the maxilla, others to the zygomatic bone. Its fibers converge, to be inserted into the muscular substance of the upper lip between the angular head and the Caninus. The lateral fibers, forming the zygomatic head, arise from the malar surface of the zygomatic bone immediately behind the zygomaticomaxillary suture and pass downward and medialward to the upper lip. [WP,unvetted]." [Wikipedia:Levator_labii_superioris] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:46805 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8f/Levator_labii_superioris.png/200px-Levator_labii_superioris.png xref: MA:0002333 xref: ncithesaurus:Levator_Labii_Superioris is_a: UBERON:0001577 ! muscle of face [Term] id: UBERON:0001581 name: depressor labii inferioris alt_id: UBERON:FMA_46816-MA_0002287 def: "The depressor labii inferioris (or quadratus labii inferioris) is a facial muscle that helps lower the bottom lip. [WP,unvetted]." [Wikipedia:Depressor_labii_inferioris] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:46816 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/96/Depressor_labii_inferioris.png/200px-Depressor_labii_inferioris.png xref: MA:0002287 xref: ncithesaurus:Depressor_Labii_Inferioris is_a: UBERON:0001577 ! muscle of face [Term] id: UBERON:0001582 name: buccinator alt_id: UBERON:FMA_46834-MA_0002272 def: "." [Wikipedia:Buccinator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:46834 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/df/Buccinator.jpg/200px-Buccinator.jpg xref: MA:0002272 xref: ncithesaurus:Buccinator is_a: UBERON:0001577 ! muscle of face [Term] id: UBERON:0001583 name: extrinsic auricular muscle alt_id: UBERON:FMA_46854-MA_0001230 comment: This class was created automatically from a combination of ontologies xref: FMA:46854 xref: MA:0001230 is_a: UBERON:0001595 {source="FMA"} ! auricular muscle [Term] id: UBERON:0001584 name: left subclavian artery alt_id: UBERON:FMA_4694-MA_0002046 def: "In human anatomy, the subclavian artery is a major artery of the upper thorax that mainly supplies blood to the head and arms. It is located below the clavicle, hence the name. There is a left subclavian and a right subclavian. On the left side of the body, the subclavian comes directly off the arch of aorta. On the right side of the body, the subclavian arises from the relatively short brachiocephalic artery (trunk) when it bifurcates into the subclavian and the right common carotid artery. The usual branches of the subclavian on both sides of the body are the vertebral artery, the internal thoracic artery, the thyrocervical trunk, the costocervical trunk and the dorsal scapular artery. The subclavian becomes the axillary artery at the lateral border of the first rib. [WP,unvetted]." [Wikipedia:Left_subclavian_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:4694 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Gray506.svg/200px-Gray506.svg.png xref: MA:0002046 xref: ncithesaurus:Left_Subclavian_Artery xref: OpenCyc:Mx4rtW7hw6gEEdudWQACs5b6Bw xref: OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rvp8u1JwpEbGdrcN5Y29ycA xref: SCTID:244245001 is_a: UBERON:0001533 ! subclavian artery [Term] id: UBERON:0001585 name: anterior vena cava alt_id: UBERON:FMA_4720-MA_0000481 def: "Trunk of systemic vein which is formed by the union of the right and left brachiocephalic veins and terminates in the right atrium." [Wikipedia:Superior_vena_cava] comment: The mouse has both left and right anterior vena cava. adult humans only have a right. Postnatally the left regresses and becomes non-functional (Wessels and Sedmera 2003). In the mouse, The right pulmonary vein passes dorsal to the right superior vena cava, the left pulmonary dorsal to the left superior vena cava (Biology of the Laboratory Mouse, Green). subset: uberon_slim synonym: "superior vena cava" EXACT [FMA:4720] synonym: "vena cava superior" RELATED [BTO:0002683] xref: BTO:0002683 xref: EHDAA:8726 xref: EHDAA2:0001962 xref: EMAPA:18417 xref: FMA:4720 xref: GAID:549 xref: galen:SuperiorVenaCava xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b4/Venenwinkel.png/200px-Venenwinkel.png xref: MA:0000481 xref: MESH:A.07.231.908.949.815 xref: ncithesaurus:Superior_Vena_Cava xref: OG:0001195 xref: SCTID:181368006 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001586 name: internal jugular vein alt_id: UBERON:FMA_4724-MA_0002157 def: "The two internal jugular veins collect the blood from the brain, the superficial parts of the face, and the neck. [WP,unvetted]." [Wikipedia:Internal_jugular_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "internal jugular" EXACT [EHDAA2:0000877] synonym: "internal jugular venous tree" EXACT [] xref: AAO:0010236 xref: EHDAA:5407 xref: EHDAA2:0000877 xref: EHDAA2:0000878 xref: EMAPA:17620 xref: FMA:4724 xref: galen:InternalJugularVein xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e9/Gray562.png/200px-Gray562.png xref: MA:0002157 xref: ncithesaurus:Internal_Jugular_Vein xref: OpenCyc:Mx4rvqdb95wpEbGdrcN5Y29ycA xref: SCTID:181372005 xref: XAO:0000382 is_a: UBERON:0004711 ! jugular vein [Term] id: UBERON:0001587 name: subclavian vein alt_id: UBERON:FMA_4725-MA_0002221 def: "In human anatomy, the subclavian veins are two large veins, one on either side of the body. Its diameter is approximately that of the small finger. It is divided into right and left subclavian vein. [WP,unvetted]." [Wikipedia:Subclavian_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "subclavian venous tree" EXACT [] xref: AAO:0010510 xref: EHDAA:4455 xref: EHDAA2:0001934 xref: EMAPA:17621 xref: FMA:4725 xref: GAID:546 xref: galen:SubclavianVein xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9e/Gray1174.png/200px-Gray1174.png xref: MA:0002221 xref: MESH:A.07.231.908.877 xref: ncithesaurus:Subclavian_Vein xref: OpenCyc:Mx4rvvvtMZwpEbGdrcN5Y29ycA xref: SCTID:181388005 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001588 name: vertebral vein alt_id: UBERON:FMA_4727-MA_0002262 def: "The vertebral vein is formed in the suboccipital triangle, from numerous small tributaries which spring from the internal vertebral venous plexuses and issue from the vertebral canal above the posterior arch of the atlas. They unite with small veins from the deep muscles at the upper part of the back of the neck, and form a vessel which enters the foramen in the transverse process of the atlas, and descends, forming a dense plexus around the vertebral artery, in the canal formed by the foramina transversaria of the cervical vertebrae. This plexus ends in a single trunk, which emerges from the foramen transversarium of the sixth cervical vertebra, and opens at the root of the neck into the back part of the innominate vein near its origin, its mouth being guarded by a pair of valves. On the right side, it crosses the first part of the subclavian artery. [WP,unvetted]." [Wikipedia:Vertebral_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: AAO:0010509 xref: FMA:4727 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c9/Gray563.png/200px-Gray563.png xref: MA:0002262 xref: ncithesaurus:Vertebral_Vein xref: OpenCyc:Mx4rwKt8xJwpEbGdrcN5Y29ycA xref: SCTID:303961000 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001589 name: internal thoracic vein alt_id: UBERON:FMA_4729-MA_0002237 def: "In human anatomy, the internal thoracic vein (previously known as the internal mammary vein) is a vessel that drains the chest wall and mamma, a term used for breast in anatomy. Bilaterally, it arises from the superior epigastric vein, accompanies the internal thoracic artery along its course and terminates in the brachiocephalic vein. [WP,unvetted]." [Wikipedia:Internal_thoracic_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: EMAPA:18641 xref: FMA:4729 xref: MA:0002237 xref: ncithesaurus:Internal_Thoracic_Vein xref: SCTID:281056008 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001590 name: pericardiacophrenic vein alt_id: UBERON:FMA_4742-MA_0002187 def: "Vena comitans of the pericardiacophrenic arteries." [Wikipedia:Pericardiacophrenic_veins] comment: This class was created automatically from a combination of ontologies xref: FMA:4742 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/75/Gray530.png/200px-Gray530.png xref: MA:0002187 xref: ncithesaurus:Pericardiacophrenic_Vein xref: SCTID:361626007 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001591 name: thymic vein alt_id: UBERON:FMA_4747-MA_0002246 comment: This class was created automatically from a combination of ontologies synonym: "thymic tributary of brachiocephalic vein" EXACT [] xref: FMA:4747 xref: MA:0002246 xref: ncithesaurus:Thymic_Vein xref: SCTID:303432009 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001592 name: bronchial vein alt_id: UBERON:FMA_4749-MA_0002088 def: "The bronchial veins are small vessels that return blood from the larger bronchi and structures at the roots of the lungs. The right side drains into the azygos vein, while the left side drains into the left superior intercostal vein or the accessory hemiazygos vein. The bronchial veins are counterparts to the bronchial arteries. The veins, however, do not return all of the blood supplied by the arteries; much of the blood that is carried in the bronchial arteries is returned to the heart via the pulmonary veins. [WP,unvetted]." [Wikipedia:Bronchial_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "bronchial venous tree" EXACT [] xref: FMA:4749 xref: MA:0002088 xref: ncithesaurus:Bronchial_Vein xref: SCTID:198293000 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001593 name: venous plexus alt_id: UBERON:FMA_4767-MA_0000069 def: "a congregation of multiple veins." [Wikipedia:Venous_plexus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "venous network" EXACT [] xref: FMA:4767 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bd/Gray585.png/200px-Gray585.png xref: MA:0000069 xref: SCTID:322151008 is_a: UBERON:0005629 ! vascular plexus relationship: has_part UBERON:0001638 ! vein relationship: part_of UBERON:0001009 ! circulatory system [Term] id: UBERON:0001594 name: azygos vein alt_id: UBERON:FMA_4838-MA_0002085 def: "The azygos vein is a vein running up the right side of the thoracic vertebral column. It can also provide an alternate path for blood to the superior vena cava. [WP,unvetted]." [Wikipedia:Azygos_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "azygos venous tree" EXACT [] xref: EMAPA:18250 xref: FMA:4838 xref: GAID:528 xref: galen:AzygosVein xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b4/Azygos_vein.png/200px-Azygos_vein.png xref: MA:0002085 xref: MESH:A.07.231.908.106 xref: ncithesaurus:Azygos_Vein is_a: UBERON:0001638 ! vein relationship: develops_from UBERON:0008268 {source="ISBN-10:0443065837"} ! right supracardinal vein [Term] id: UBERON:0001595 name: auricular muscle alt_id: UBERON:FMA_48966-MA_0001229 def: "The auriculares muscles are the three muscles surrounding the auricula or outer ear: anterior auricular muscle superior auricular muscle posterior auricular muscle [WP,unvetted]." [Wikipedia:Auriculares_muscles] synonym: "muscle of auricle" EXACT [] xref: FMA:48966 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d2/Gray906.png/200px-Gray906.png xref: MA:0001229 xref: SCTID:244757006 is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0002376 ! implied link automatically realized ! muscle of head relationship: part_of UBERON:0001757 ! pinna [Term] id: UBERON:0001596 name: intrinsic auricular muscle alt_id: UBERON:FMA_48967-MA_0001231 xref: FMA:48967 xref: MA:0001231 xref: SCTID:244762007 is_a: UBERON:0001595 {source="FMA"} ! auricular muscle relationship: part_of UBERON:0001595 ! auricular muscle [Term] id: UBERON:0001597 name: masseter alt_id: UBERON:FMA_48996-MA_0002343 def: "In human anatomy, the masseter is one of the muscles of mastication. In the animal kingdom, it is particularly powerful in herbivores to facilitate chewing of plant matter. [WP,unvetted]." [Wikipedia:Masseter] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "masseter muscle" RELATED [BTO:0001755] xref: BTO:0001755 xref: EFO:0001424 xref: EHDAA:10561 xref: EHDAA2:0001067 xref: EMAPA:25135 xref: FMA:48996 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/78/Illu_head_neck_muscle.jpg/200px-Illu_head_neck_muscle.jpg xref: MA:0002343 xref: MESH:A.02.633.567.600.500 xref: ncithesaurus:Masseter_Muscle xref: OG:0000823 xref: SCTID:181738000 is_a: UBERON:0001577 ! implied link automatically realized ! muscle of face is_a: UBERON:0003681 ! masticatory muscle relationship: part_of UBERON:0001567 ! cheek [Term] id: UBERON:0001598 name: temporalis alt_id: UBERON:FMA_49006-MA_0002390 def: "The temporal muscle is one of the muscles of mastication. [WP,unvetted]." [Wikipedia:Temporalis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "musculus temporalis" EXACT [FMA:49006, FMA:TA] synonym: "temporal muscle" EXACT [] xref: EHDAA:10565 xref: EHDAA2:0002001 xref: EMAPA:25138 xref: FMA:49006 xref: GAID:148 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d3/Gray382.png/200px-Gray382.png xref: MA:0002390 xref: MESH:A.02.633.567.600.850 xref: ncithesaurus:Temporal_Muscle xref: OG:0000929 is_a: UBERON:0002376 ! muscle of head is_a: UBERON:0003681 ! implied link automatically realized ! masticatory muscle relationship: part_of UBERON:0001444 ! subdivision of head [Term] id: UBERON:0001599 name: stapedius alt_id: UBERON:FMA_49027-MA_0001220 def: "The stapedius is the smallest skeletal muscle in the human body. At just over one millimeter in length, its purpose is to stabilize the smallest bone in the body, the stapes. The stapedius emerges from a pinpoint foramen in the apex of the pyramidal eminence (a hollow, cone-shaped prominence in the posterior wall of the tympanic cavity), and inserts into the neck of the stapes. [WP,unvetted]." [Wikipedia:Stapedius] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "stapedius muscle" EXACT [EHDAA2:0001909] xref: EHDAA:9029 xref: EHDAA2:0001909 xref: EMAPA:18586 xref: FMA:49027 xref: GAID:164 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/65/Musculusstapedius.png/200px-Musculusstapedius.png xref: MA:0001220 xref: MESH:A.02.633.567.950 xref: ncithesaurus:Stapedius_Muscle xref: SCTID:244780003 is_a: UBERON:0004113 ! muscle of auditory ossicle relationship: part_of UBERON:0001756 ! middle ear [Term] id: UBERON:0001600 name: tensor tympani alt_id: UBERON:FMA_49028-MA_0001221 def: "the larger of the two muscles of the tympanic cavity, is contained in the bony canal above the osseous portion of the auditory tube. Its role is to dampen sounds produced from chewing. It arises from the cartilaginous portion of the auditory tube and the adjoining part of the great wing of the sphenoid, as well as from the osseous canal in which it is contained. Passing backward through the canal, it ends in a slender tendon which enters the tympanic cavity, makes a sharp bend around the extremity of the septum, known as the processus cochleariformis[1], and is inserted into the manubrium of the malleus, near its root[WP]." [Wikipedia:Tensor_tympani] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "eustachian muscle" EXACT [] xref: EHDAA2:0002002 xref: EMAPA:18587 xref: FMA:49028 xref: GAID:166 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/82/Gray912.png/200px-Gray912.png xref: MA:0001221 xref: MESH:A.02.633.567.975 xref: ncithesaurus:Tensor_Tympani is_a: UBERON:0002376 ! muscle of head is_a: UBERON:0004112 ! implied link automatically realized ! muscle of middle ear is_a: UBERON:0004113 ! muscle of auditory ossicle relationship: part_of UBERON:0004114 ! tympanic cavity [Term] id: UBERON:0001601 name: extra-ocular muscle alt_id: UBERON:0006229 alt_id: UBERON:FMA_49033-MA_0000271 def: "Skeletal muscle derived from cranial mesoderm and controls eye movements." [GO:0002074, Wikipedia:Extraocular_muscles] comment: TODO - resolve discrepancies in which muscles are considered extra-ocular subset: uberon_slim subset: vertebrate_core synonym: "extra-ocular skeletal muscle" EXACT [] synonym: "extraocular muscle" EXACT [] synonym: "extraocular musculature" EXACT [ZFA:0000511] synonym: "extraocular skeletal muscle" EXACT [MA:0001271] synonym: "extrinsic eye muscle" EXACT [Obol:automatic] synonym: "extrinsic muscle of eyeball" EXACT [] synonym: "extrinsic ocular muscle" EXACT [EHDAA2:0000482] xref: BTO:0001579 xref: EFO:0001921 xref: EHDAA:5729 xref: EHDAA2:0000482 xref: EMAPA:18234 xref: FMA:49033 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/61/MRI_of_human_eye.jpg/200px-MRI_of_human_eye.jpg xref: MA:0001271 xref: OG:0000549 xref: SCTID:181150000 xref: ZFA:0000511 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0004277 ! eye muscle relationship: adjacent_to UBERON:0000019 ! camera-type eye relationship: develops_from UBERON:0005280 ! head mesoderm relationship: develops_from UBERON:0006230 {source="EHDAA2"} ! extrinsic ocular pre-muscle mass relationship: has_part UBERON:0001134 ! skeletal muscle tissue relationship: part_of UBERON:0003269 {source="EHDAA2"} ! skeletal muscle of eye [Term] id: UBERON:0001602 name: medial rectus alt_id: UBERON:0004836 alt_id: UBERON:FMA_49037-ZFA_0000301 def: "The medial rectus muscle is a muscle in the orbit. As with most of the muscles of the orbit, it is innervated by the inferior division of the oculomotor nerve (Cranial Nerve III). This muscle shares an origin with several other extrinsic eye muscles, the anulus tendineus, or common tendon. It is the largest of the extraocular muscles and its only action is adduction of the eyeball. [WP,unvetted]." [Wikipedia:Medial_rectus] subset: uberon_slim subset: vertebrate_core synonym: "medial rectus extraocular muscle" EXACT [MA:0001281] xref: FMA:49037 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e8/Eyemuscles.png/200px-Eyemuscles.png xref: MA:0001281 xref: OG:0001127 xref: SCTID:181151001 xref: TAO:0000301 xref: ZFA:0000301 is_a: UBERON:0006533 {source="MA"} ! rectus extraocular muscle relationship: part_of UBERON:0002376 ! muscle of head [Term] id: UBERON:0001603 name: lateral rectus alt_id: UBERON:0004837 alt_id: UBERON:FMA_49038-ZFA_0000383 def: "The lateral rectus muscle is a muscle in the orbit. It is one of six extraocular muscles that control the movements of the eye (abduction in this case) and the only muscle innervated by the abducens nerve, cranial nerve VI. [WP,unvetted]." [Wikipedia:Lateral_rectus] subset: uberon_slim subset: vertebrate_core synonym: "lateral rectus extraocular muscle" EXACT [MA:0001280] xref: FMA:49038 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e8/Eyemuscles.png/200px-Eyemuscles.png xref: MA:0001280 xref: OG:0001129 xref: SCTID:181152008 xref: TAO:0000383 xref: ZFA:0000383 is_a: UBERON:0006533 {source="MA"} ! rectus extraocular muscle [Term] id: UBERON:0001604 name: levator palpebrae superioris alt_id: UBERON:FMA_49041-MA_0001272 def: "The levator palpebrae superioris (or levator muscle of upper eyelid) is the muscle in the orbit that elevates the superior (upper) eyelid. [WP,unvetted]." [Wikipedia:Levator_palpebrae_superioris] subset: uberon_slim xref: FMA:49041 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e8/Eyemuscles.png/200px-Eyemuscles.png xref: MA:0001272 xref: ncithesaurus:Levator_Palpebrae_Superioris xref: SCTID:244774006 is_a: UBERON:0001601 {source="FMA"} ! extra-ocular muscle is_a: UBERON:0003660 ! implied link automatically realized ! eyelid muscle relationship: part_of UBERON:0001711 {source="FMA"} ! eyelid [Term] id: UBERON:0001605 name: ciliary muscle alt_id: UBERON:FMA_49151-MA_0001269 def: "The ciliary muscle is a smooth muscle in the eye that controls the eye's accommodation for viewing objects at varying distances and regulates the flow of aqueous humour through Schlemm's canal. [WP,unvetted]." [Wikipedia:Ciliary_muscle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Bowman`s muscles" RELATED [BTO:0000654] synonym: "musculus ciliarus" RELATED [BTO:0000654] xref: BTO:0000654 xref: FMA:49151 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/28/Gray872.png/200px-Gray872.png xref: MA:0001269 xref: ncithesaurus:Ciliary_Muscle xref: SCTID:280862009 is_a: UBERON:0001601 ! extra-ocular muscle relationship: part_of UBERON:0001775 ! ciliary body [Term] id: UBERON:0001606 name: muscle of iris alt_id: UBERON:FMA_49154-MA_0001287 def: "." [Wikipedia:Iris_muscle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "iris muscle" EXACT [] synonym: "iris muscle organ" EXACT [OBOL:automatic] synonym: "muscle organ of iris" EXACT [OBOL:automatic] xref: FMA:49154 xref: MA:0001287 xref: SCTID:280888007 is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0004277 ! implied link automatically realized ! eye muscle relationship: part_of UBERON:0001769 intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0001769 ! iris [Term] id: UBERON:0001607 name: sphincter pupillae alt_id: UBERON:FMA_49157-MA_0001289 def: "The iris sphincter muscle (pupillary sphincter, circular muscle of iris, circular fibers) is a muscle in the part of the eye called the iris. It encircles the eye, appropriate to its function as a constrictor. It is found in vertebrates and some cephalopods. In humans, it functions to constrict the pupil in bright light or during accommodation. Its dimensions are about 0.75 mm wide by 0.15 mm thick. It is controlled by parasympathetic fibers that originate from the Edinger-Westphal nucleus, travel along the oculomotor nerve (CN III), synapse in the ciliary ganglion, and then enter the eye via the short ciliary nerves. Initially, all the myocytes are of the smooth muscle type, but much later in life, so that ultimately most cells are of the striated muscle type. [WP,unvetted]." [Wikipedia:Sphincter_pupillae] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "iris sphincter muscle" EXACT [BTO:0000656] synonym: "musculus sphincter pupillae" EXACT [BTO:0000656] synonym: "sphincter muscle of pupil" EXACT [BTO:0000656] xref: BTO:0000656 xref: FMA:49157 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2f/Gray878.png/200px-Gray878.png xref: MA:0001289 is_a: UBERON:0004234 {source="BTO"} ! iris smooth muscle is_a: UBERON:0007521 ! implied link automatically realized ! smooth muscle sphincter relationship: part_of UBERON:0001769 intersection_of: UBERON:0004590 ! sphincter muscle intersection_of: part_of UBERON:0001769 ! iris [Term] id: UBERON:0001608 name: dilatator pupillae alt_id: UBERON:FMA_49158-MA_0001288 def: "The iris dilator muscle (pupil dilator muscle, pupillary dilator, radial muscle of iris, radiating fibers), is a smooth muscle of the eye, running radially in the iris and therefore fit as a dilator. It is innervated by the sympathetic system, which acts by releasing noradrenaline, which acts on α1-receptors.. Thus, when presented with a threatening stimuli that activates the fight-or-flight response, this innervation dilates the iris, thus temporarily letting more light reach the retina. [WP,unvetted]." [Wikipedia:Dilator_pupillae, Wikipedia:Iris_dilator_muscle] subset: uberon_slim synonym: "dilator muscle of pupil" EXACT [] synonym: "dilator of pupil" EXACT [] synonym: "dilator pupillae" EXACT [] synonym: "dilator pupillae muscle" RELATED [BTO:0001371] synonym: "iris dilator muscle" EXACT [BTO:0001371] synonym: "musculus dilatator pupillae" EXACT [FMA:49158, FMA:TA] synonym: "musculus dilator pupillae" RELATED [BTO:0001371] xref: BTO:0001371 xref: FMA:49158 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2f/Gray878.png/200px-Gray878.png xref: MA:0001288 xref: ncithesaurus:Dilator_Pupillae_Muscle is_a: UBERON:0004234 {source="BTO"} ! iris smooth muscle [Term] id: UBERON:0001609 name: isthmus of thyroid gland alt_id: UBERON:FMA_49178-MA_0000727 def: "The thyroid isthmus connects together the lower thirds of the lobes; it measures about 1.25 cm. in breadth, and the same in depth, and usually covers the second and third rings of the trachea. Its situation and size present, however, many variations. In the middle line of the neck it is covered by the skin and fascia, and close to the middle line, on either side, by the Sternothyreoideus. Across its upper border runs an anastomotic branch uniting the two superior thyroid arteries; at its lower border are the inferior thyroid veins. [WP,unvetted]." [Wikipedia:Thyroid_isthmus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "isthmus" BROAD [OG:0000739] synonym: "isthmus glandulae thyroideae" EXACT [] synonym: "thyroid gland isthmus" EXACT [] synonym: "thyroid isthmus" EXACT [] xref: EHDAA:5777 xref: EHDAA:5789 xref: EHDAA2:0002031 xref: EMAPA:18195 xref: EMAPA:18829 xref: FMA:49178 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9e/Gray1174.png/200px-Gray1174.png xref: MA:0000727 xref: ncithesaurus:Thyroid_Gland_Isthmus xref: OG:0000739 xref: SCTID:245539003 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: part_of UBERON:0002046 ! thyroid gland [Term] id: UBERON:0001610 name: lingual artery alt_id: UBERON:FMA_49526-MA_0001992 def: "The lingual artery arises from the external carotid between the superior thyroid and facial artery[WP]." [Wikipedia:Lingual_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "lingual branch of external carotid artery" EXACT [] xref: AAO:0010492 xref: FMA:49526 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3c/Lingual_artery.PNG/200px-Lingual_artery.PNG xref: MA:0001992 xref: ncithesaurus:Lingual_Artery xref: OpenCyc:Mx4rvfqDCZwpEbGdrcN5Y29ycA xref: SCTID:181327002 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001611 name: sublingual artery alt_id: UBERON:FMA_49543-MA_0002049 def: "The Sublingual Artery arises at the anterior margin of the Hyoglossus, and runs forward between the Genioglossus and Mylohyoideus to the sublingual gland. It supplies the gland and gives branches to the Mylohyoideus and neighboring muscles, and to the mucous membrane of the mouth and gums. One branch runs behind the alveolar process of the mandible in the substance of the gum to anastomose with a similar artery from the other side; another pierces the Mylohyoideus and anastomoses with the submental branch of the external maxillary artery. [WP,unvetted]." [Wikipedia:Sublingual_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "sublingual branch of lingual artery" EXACT [] xref: AAO:0010491 xref: FMA:49543 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7a/Gray559.png/200px-Gray559.png xref: MA:0002049 xref: ncithesaurus:Sublingual_Artery xref: SCTID:368706006 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001612 name: facial artery alt_id: UBERON:FMA_49549-MA_0001950 def: "The facial artery (external maxillary artery in older texts) is a branch of the external carotid artery that supplies structures of the face. [WP,unvetted]." [Wikipedia:Facial_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "external maxillary artery" EXACT [] xref: EMAPA:19213 xref: FMA:49549 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7b/Gray508.png/200px-Gray508.png xref: MA:0001950 xref: ncithesaurus:Facial_Artery xref: OpenCyc:Mx4rwCt95ZwpEbGdrcN5Y29ycA xref: SCTID:181328007 is_a: UBERON:0001637 ! artery is_a: UBERON:0003496 ! implied link automatically realized ! head blood vessel relationship: part_of UBERON:0001456 intersection_of: UBERON:0001637 ! artery intersection_of: part_of UBERON:0001456 ! face [Term] id: UBERON:0001613 name: occipital artery alt_id: UBERON:FMA_49586-MA_0002009 def: "The occipital artery arises opposite the facial artery, its path is below the posterior belly of digastric to the occipital region. This artery supplies blood to the back of the scalp and sterno-mastoid muscles. Other muscles it supplies are deep muscles in the back and neck. [WP,unvetted]." [Wikipedia:Occipital_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:49586 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7b/Gray508.png/200px-Gray508.png xref: MA:0002009 xref: ncithesaurus:Occipital_Artery xref: OpenCyc:Mx4rwC1IFJwpEbGdrcN5Y29ycA xref: SCTID:244219005 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001614 name: superficial temporal artery alt_id: UBERON:FMA_49650-MA_0002062 def: "In human anatomy, the superficial temporal artery is a major artery of the head. It arises from the external carotid artery when it bifurcates into the superficial temporal artery and maxillary artery. Its pulse is palpable superior to the zygomatic arch, anterior and superior to the tragus. [WP,unvetted]." [Wikipedia:Superficial_temporal_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: BTO:0003747 xref: FMA:49650 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a5/Gray1200.png/200px-Gray1200.png xref: MA:0002062 xref: OpenCyc:Mx4rv33WkZwpEbGdrcN5Y29ycA xref: SCTID:181325005 is_a: UBERON:0001632 ! temporal artery [Term] id: UBERON:0001615 name: transverse facial artery alt_id: UBERON:FMA_49657-MA_0002068 def: "The transverse facial artery is an artery that branches from the superficial temporal artery and runs across the face. [WP,unvetted]." [Wikipedia:Transverse_facial_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:49657 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/35/Gray515.png/200px-Gray515.png xref: MA:0002068 xref: ncithesaurus:Transverse_Facial_Artery xref: SCTID:146551008 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001616 name: maxillary artery alt_id: UBERON:FMA_49675-MA_0001919 def: "The maxillary artery (or internal maxillary artery in older texts) is an artery that supplies deep structures of the face. It comes just out behind the neck of the mandible. [WP,unvetted]." [Wikipedia:Maxillary_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "internal maxillary artery" EXACT [] xref: EHDAA:7357 xref: EHDAA2:0001069 xref: EMAPA:17311 xref: FMA:49675 xref: GAID:498 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/39/Gray510.png/200px-Gray510.png xref: MA:0001919 xref: MESH:A.07.231.114.523 xref: ncithesaurus:Maxillary_Artery xref: OpenCyc:Mx4rwDDJ45wpEbGdrcN5Y29ycA xref: SCTID:181326006 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0001637 ! artery is_a: UBERON:0005911 ! implied link automatically realized ! endo-epithelium relationship: develops_from UBERON:0004363 {source="Wikipedia"} ! aortic arch [Term] id: UBERON:0001617 name: mental artery alt_id: UBERON:FMA_49701-MA_0002002 def: "The inferior alveolar artery (inferior dental artery) is an artery of the face. [WP,unvetted]." [Wikipedia:Mental_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "mental branch of inferior alveolar artery" EXACT [] synonym: "ramus mentalis (arteria alveolaris inferior)" EXACT [FMA:49701, FMA:TA] xref: FMA:49701 xref: MA:0002002 xref: ncithesaurus:Mental_Artery xref: SCTID:147561008 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001618 name: buccal artery alt_id: UBERON:FMA_49754-MA_0001924 def: "The buccal artery (buccinator artery) is small and runs obliquely forward, between the Pterygoideus internus and the insertion of the Temporalis, to the outer surface of the Buccinator, to which it is distributed, anastomosing with branches of the external maxillary and with the infraorbital. [WP,unvetted]." [Wikipedia:Buccal_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:49754 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7b/Gray508.png/200px-Gray508.png xref: MA:0001924 xref: ncithesaurus:Buccal_Artery xref: SCTID:148066005 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001619 name: ophthalmic artery alt_id: UBERON:FMA_49868-MA_0002011 def: "The ophthalmic artery is a branch of the internal carotid artery which supplies branches to supply the eye and other structures in the orbit. It enters the orbit together with the Optic nerve through the Optic canal. [WP,unvetted]." [Wikipedia:Ophthalmic_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: AAO:0010497 xref: EHDAA:7363 xref: EHDAA2:0001300 xref: EMAPA:17007 xref: FMA:49868 xref: GAID:503 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/ce/Gray514.png/200px-Gray514.png xref: MA:0002011 xref: MESH:A.07.231.114.622 xref: OpenCyc:Mx4rvcCxpJwpEbGdrcN5Y29ycA xref: SCTID:181310005 xref: XAO:0000368 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001620 name: central retinal artery alt_id: UBERON:FMA_49879-MA_0002038 def: "The central retinal artery (retinal artery) branches off the ophthalmic artery, running inferior to the optic nerve within its dural sheath to the eyeball. [WP,unvetted]." [Wikipedia:Central_retinal_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "arteria centralis retinae" RELATED [Wikipedia:Central_retinal_artery] synonym: "central artery of retina" EXACT [] synonym: "central artery of the retina" RELATED [Wikipedia:Central_retinal_artery] synonym: "retinal artery" EXACT [] synonym: "Zinn's artery" EXACT [] xref: FMA:49879 xref: GAID:508 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/59/Gray514_updated.png/200px-Gray514_updated.png xref: MA:0002038 xref: MESH:A.07.231.114.765 xref: ncithesaurus:Retinal_Artery xref: SCTID:277771001 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001621 name: coronary artery alt_id: UBERON:FMA_49893-MA_0002453 def: "Systemic artery which supplies the heart.[FMA]" [FMA:FMA, Wikipedia:Coronary_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "coronary arterial tree" EXACT [] xref: BTO:0000290 xref: EFO:0002551 xref: EMAPA:19160 xref: EMAPA:25968 xref: EV:0100383 xref: FMA:49893 xref: galen:CoronaryArtery xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/46/Gray492.png/200px-Gray492.png xref: MA:0002453 xref: ncithesaurus:Coronary_Artery xref: OpenCyc:Mx4rvoL56ZwpEbGdrcN5Y29ycA xref: SCTID:181294004 is_a: UBERON:0003498 ! implied link automatically realized ! heart blood vessel is_a: UBERON:0004573 ! systemic artery relationship: part_of UBERON:0000948 ! heart [Term] id: UBERON:0001622 name: lacrimal artery alt_id: UBERON:FMA_49927-MA_0001988 def: "The lacrimal artery arises close to the optic foramen, and is one of the largest branches derived from the ophthalmic artery: not infrequently it is given off before the artery enters the orbit. It accompanies the lacrimal nerve along the upper border of the Lateral Rectus, supplies the lacrimal gland. [WP,unvetted]." [Wikipedia:Lacrimal_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:49927 xref: MA:0001988 xref: ncithesaurus:Lacrimal_Artery xref: SCTID:369324002 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001623 name: dorsal nasal artery alt_id: UBERON:FMA_50000-MA_0001945 def: "The dorsal nasal artery (nasal artery) is an artery of the head. It is one of the two terminal branches of the ophthalmic artery. [WP,unvetted]." [Wikipedia:Dorsal_nasal_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "dorsal nasal branch of ophthalmic artery" EXACT [] synonym: "external nasal artery" EXACT [] xref: FMA:50000 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/35/Gray515.png/200px-Gray515.png xref: MA:0001945 xref: ncithesaurus:Dorsal_Nasal_Artery xref: SCTID:369333000 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001624 name: anterior cerebral artery alt_id: UBERON:FMA_50028-MA_0001915 def: "One of a pair of arteries on the brain that supply oxygen to most medial portions of frontal lobes and superior medial parietal lobes. The 2 anterior cerebral arteries arise from the internal carotid artery and are part of the Circle of Willis." [Wikipedia:Anterior_cerebral_artery] subset: uberon_slim xref: EHDAA:5296 xref: EHDAA2:0000128 xref: EMAPA:17854 xref: EMAPA:18614 xref: FMA:50028 xref: GAID:485 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/25/Gray517.png/200px-Gray517.png xref: MA:0001915 xref: MESH:A.07.231.114.228.100 xref: ncithesaurus:Anterior_Cerebral_Artery xref: OpenCyc:Mx4rv8biO5wpEbGdrcN5Y29ycA xref: SCTID:181309000 is_a: UBERON:0004449 ! cerebral artery [Term] id: UBERON:0001625 name: right coronary artery alt_id: UBERON:FMA_50039-MA_0002455 def: "Coronary artery which emerges from the anterior aortic sinus, between the right auricle and the pulmonary trunk, and supplies the right side of the heart.[FMA]" [FMA:FMA, Wikipedia:Right_coronary_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "right coronary arterial tree" EXACT [] xref: EHDAA2:0004505 xref: FMA:50039 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/46/Gray492.png/200px-Gray492.png xref: MA:0002455 xref: ncithesaurus:Right_Coronary_Artery xref: SCTID:362037006 is_a: UBERON:0001621 ! coronary artery relationship: supplies UBERON:0000948 ! heart relationship: supplies UBERON:0002349 ! myocardium [Term] id: UBERON:0001626 name: left coronary artery alt_id: UBERON:FMA_50040-MA_0002454 def: "Coronary artery which emerges from the left posterior aortic sinus, between the left auricle and the pulmonary trunk, and supplies the left side of the heart.[FMA]" [FMA:FMA, Wikipedia:Left_coronary_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "left coronary arterial tree" EXACT [] xref: EHDAA2:0004504 xref: FMA:50040 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/50/Gray495.png/200px-Gray495.png xref: MA:0002454 xref: ncithesaurus:Left_Coronary_Artery xref: SCTID:362034004 is_a: UBERON:0001621 ! coronary artery relationship: supplies UBERON:0000948 ! heart relationship: supplies UBERON:0002349 ! myocardium [Term] id: UBERON:0001627 name: middle cerebral artery alt_id: UBERON:FMA_50079-MA_0001935 def: "The middle cerebral artery (MCA) is one of the three major paired arteries that supplies blood to the cerebrum. The MCA arises from the internal carotid and continues into the lateral sulcus where it then branches and projects to many parts of the lateral cerebral cortex. It also supplies blood to the anterior temporal lobes and the insular cortices. The left and right MCAs rise from trifurcations of the internal carotid arteries and thus are connected to the anterior cerebral arteries and the posterior communicating arteries, which connect to the posterior cerebral arteries. The MCAs are not considered a part of the Circle of Willis. [WP,unvetted]." [Wikipedia:Middle_cerebral_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "sylvian artery" EXACT [] xref: EHDAA:5298 xref: EHDAA2:0001179 xref: EMAPA:18239 xref: EMAPA:18615 xref: FMA:50079 xref: GAID:487 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/25/Gray517.png/200px-Gray517.png xref: MA:0001935 xref: MESH:A.07.231.114.228.550 xref: ncithesaurus:Middle_Cerebral_Artery xref: OpenCyc:Mx4rvh3qQ5wpEbGdrcN5Y29ycA xref: SCTID:181312002 is_a: UBERON:0004449 ! cerebral artery [Term] id: UBERON:0001628 name: posterior communicating artery alt_id: UBERON:FMA_50084-MA_0002023-ZFA_0005001 def: "An artery that connects caudal division of the internal carotid artery and the basal communicating artery to the basilar artery. Isogai et al. 2001." [Wikipedia:Posterior_communicating_artery, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "caudal communicating segment" EXACT [ZFA:0005001] synonym: "PCA" RELATED [] synonym: "PCS" RELATED [] synonym: "posterior communicating segment of the basilar artery" EXACT [ZFA:0005001] xref: EHDAA:3352 xref: EHDAA2:0001487 xref: EHDAA2:0004518 xref: EMAPA:18600 xref: FMA:50084 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2e/Circle_of_Willis_en.svg/200px-Circle_of_Willis_en.svg.png xref: MA:0002023 xref: ncithesaurus:Posterior_Communicating_Artery xref: OpenCyc:Mx4rwDDlqpwpEbGdrcN5Y29ycA xref: SCTID:181314001 xref: TAO:0005001 xref: ZFA:0005001 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0005911 ! implied link automatically realized ! endo-epithelium is_a: UBERON:0006347 ! communicating artery relationship: branch_of UBERON:0001532 ! internal carotid artery [Term] id: UBERON:0001629 name: carotid body alt_id: UBERON:FMA_50095-MA_0002463 def: "The carotid body (carotid glomus or glomus caroticum) is a small cluster of chemoreceptors and supporting cells located near the fork of the carotid artery (which runs along both sides of the throat). The carotid body detects changes in the composition of arterial blood flowing through it, mainly the partial pressure of oxygen, but also of carbon dioxide. Furthermore, it is also sensitive to changes in pH and temperature. [WP,unvetted]." [Wikipedia:Carotid_body] comment: This class was created automatically from a combination of ontologies subset: organ_slim subset: uberon_slim xref: BTO:0000204 xref: EMAPA:19211 xref: FMA:50095 xref: GAID:813 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b3/Gray1186.png/200px-Gray1186.png xref: MA:0002463 xref: MESH:A.08.800.550.700.120.600.150 xref: ncithesaurus:Carotid_Body xref: SCTID:362586000 is_a: UBERON:0000062 ! organ relationship: part_of UBERON:0001009 ! circulatory system [Term] id: UBERON:0001630 name: muscle organ alt_id: UBERON:FMA_5022-MIAA_0000302-XAO_0000174 def: "Organ consisting of a tissue made up of various elongated cells that are specialized to contract and thus to produce movement and mechanical work[GO]. Nonparenchymatous organ that primarily consists of skeletal muscle tissue aggregated into macroscopic fasciculi by connective tissue; together with other muscles, it constitutes the muscular system. Examples: biceps, diaphragm, masseter, right third external intercostal muscle, external oblique, levator ani, serratus anterior[FMA]." [GO:0007517] subset: organ_slim subset: uberon_slim subset: vertebrate_core synonym: "muscle" EXACT [ZFA:0005145] synonym: "skeletal muscle system" RELATED [BTO:0001103] synonym: "somatic muscle" RELATED [BTO:0001103] xref: AAO:0011066 xref: BTO:0001103 xref: EMAPA:18187 xref: EMAPA:18923 xref: EV:0100146 xref: FMA:5022 xref: GAID:131 xref: galen:Muscle xref: MA:0000015 xref: OG:0001245 xref: OpenCyc:Mx4rv2kf-5wpEbGdrcN5Y29ycA xref: SCTID:71616004 xref: TAO:0005145 xref: XAO:0000172 xref: ZFA:0005145 is_a: UBERON:0000062 ! implied link automatically realized ! organ is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0005090 ! muscle structure relationship: has_part UBERON:0002385 intersection_of: UBERON:0000062 ! organ intersection_of: has_part UBERON:0002385 ! muscle tissue relationship: part_of UBERON:0000383 ! musculature of body [Term] id: UBERON:0001631 name: thoracic duct alt_id: UBERON:FMA_5031-ZFA_0005110 def: "Lymphatic trunk that connects all tributaries of the thoracic duct tree to the trunk of the left brachiocephalic vein[FMA]." [FMA:5031, Wikipedia:Thoracic_duct] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "trunk of thoracic duct tree" EXACT [] xref: EHDAA2:0004501 xref: EMAPA:19310 xref: FMA:5031 xref: GAID:1290 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/75/Gray599.png/200px-Gray599.png xref: MA:0002801 xref: MESH:A.15.382.520.869 xref: ncithesaurus:Thoracic_Duct xref: SCTID:362600004 xref: TAO:0005110 xref: ZFA:0005110 is_a: UBERON:0001473 ! lymphatic vessel is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: develops_from UBERON:0002065 ! postcardinal vein [Term] id: UBERON:0001632 name: temporal artery alt_id: UBERON:FMA_50438-MA_0002061 def: "In human anatomy, the superficial temporal artery is a major artery of the head. It arises from the external carotid artery when it bifurcates into the superficial temporal artery and maxillary artery. Its pulse is palpable superior to the zygomatic arch, anterior and superior to the tragus. [WP,unvetted]." [Wikipedia:Temporal_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: AAO:0010495 xref: FMA:50438 xref: GAID:489 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a5/Gray1200.png/200px-Gray1200.png xref: MA:0002061 xref: MESH:A.07.231.114.228.868 xref: ncithesaurus:Temporal_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001633 name: basilar artery alt_id: UBERON:FMA_50542-MA_0001920-ZFA_0005002 def: "In human anatomy, the basilar artery is one of the arteries that supplies the brain with oxygen-rich blood. The two vertebral arteries and the basilar artery are sometimes together called the vertebrobasilar system, which supplies blood to the posterior part of circle of Willis and anastomoses with blood supplied to the anterior part of the circle of Willis from the carotid arteries. [WP,unvetted]." [Wikipedia:Basilar_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "BA" RELATED [] xref: EHDAA:5285 xref: EHDAA2:0000163 xref: EMAPA:17307 xref: FMA:50542 xref: GAID:474 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2e/Circle_of_Willis_en.svg/200px-Circle_of_Willis_en.svg.png xref: MA:0001920 xref: MESH:A.07.231.114.106 xref: ncithesaurus:Basilar_Artery xref: OG:0000237 xref: OpenCyc:Mx4rwJTtcZwpEbGdrcN5Y29ycA xref: SCTID:244215004 xref: TAO:0005002 xref: ZFA:0005002 is_a: UBERON:0001637 ! artery is_a: UBERON:0003496 ! implied link automatically realized ! head blood vessel relationship: part_of UBERON:0002200 ! vasculature of head [Term] id: UBERON:0001634 name: mesencephalic artery alt_id: UBERON:FMA_50570-ZFA_0001068 def: "Develops from the proximal portion of the primitive mesencephalic artery. Isogai et al.2001." [ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "MsA" RELATED [] xref: FMA:50570 xref: TAO:0001068 xref: XAO:0004173 xref: ZFA:0001068 is_a: UBERON:0001637 ! artery relationship: supplies UBERON:0001891 ! midbrain [Term] id: UBERON:0001635 name: superior cerebellar artery alt_id: UBERON:FMA_50573-MA_0001934 def: "The superior cerebellar artery (SCA) arises near the termination of the basilar artery. It passes lateralward, immediately below the oculomotor nerve, which separates it from the posterior cerebral artery, winds around the cerebral peduncle, close to the trochlear nerve, and, arriving at the upper surface of the cerebellum, divides into branches which ramify in the pia mater and anastomose with those of the inferior cerebellar arteries. Several branches are given to the pineal body, the anterior medullary velum, and the tela chorioidea of the third ventricle. [WP,unvetted]." [Wikipedia:Superior_cerebellar_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: EHDAA2:0000681 xref: EMAPA:19309 xref: FMA:50573 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e1/CerebellumArteries.jpg/200px-CerebellumArteries.jpg xref: MA:0001934 xref: ncithesaurus:Superior_Cerebellar_Artery xref: SCTID:244214000 is_a: UBERON:0001637 ! artery is_a: UBERON:0003496 ! implied link automatically realized ! head blood vessel relationship: part_of UBERON:0001633 ! basilar artery relationship: supplies UBERON:0001895 ! metencephalon relationship: supplies UBERON:0002037 ! cerebellum [Term] id: UBERON:0001636 name: posterior cerebral artery alt_id: UBERON:FMA_50583-MA_0002022 def: "The posterior cerebral artery (PCA) is one of a pair of blood vessels that supplies oxygenated blood to the posterior aspect of the brain in human anatomy]. It arises near the intersection of the posterior communicating artery and the basilar artery and connects with the ipsilateral middle cerebral artery (MCA) and internal carotid artery via the posterior communicating artery (PCommA). [WP,unvetted]." [Wikipedia:Posterior_cerebral_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: EHDAA2:0000659 xref: EMAPA:17861 xref: EMAPA:18616 xref: FMA:50583 xref: GAID:488 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/25/Gray517.png/200px-Gray517.png xref: MA:0002022 xref: MESH:A.07.231.114.228.700 xref: ncithesaurus:Posterior_Cerebral_Artery xref: OpenCyc:Mx4rwO4qIJwpEbGdrcN5Y29ycA xref: SCTID:181313007 is_a: UBERON:0003496 ! implied link automatically realized ! head blood vessel is_a: UBERON:0004449 ! cerebral artery relationship: part_of UBERON:0001633 ! basilar artery [Term] id: UBERON:0001637 name: artery alt_id: UBERON:FMA_50720-MA_0000061-MA_0000064-MIAA_0000034-XAO_0000114-ZFA_0000005 def: "An epithelial tube or tree of tibes that transports blood away from the heart[modified from AEO definition]." [AEO:JB] comment: Note that in FMA an artery is a tree, whereas AEO/JB defines it as a tube. In fact, we use this class in a fairly generic fashion, to encompass both individual tubes and tube trees. In the future we may introduce more specific subclasses subset: uberon_slim subset: vertebrate_core synonym: "arterial subtree" EXACT [] synonym: "arterial system" RELATED [] synonym: "arterial tree organ part" EXACT [] synonym: "arterial vessel" RELATED [] xref: AAO:0010211 xref: AEO:0000208 xref: BTO:0000573 xref: EFO:0000814 xref: EHDAA2:0000143 xref: EHDAA2:0003253 xref: EV:0100026 xref: FMA:50720 xref: GAID:468 xref: galen:Artery xref: MA:0000064 xref: MAT:0000034 xref: MESH:A.07.231.114 xref: MIAA:0000034 xref: ncithesaurus:Artery xref: OG:0001251 xref: OpenCyc:Mx4rvVjknZwpEbGdrcN5Y29ycA xref: SCTID:362877004 xref: TAO:0000005 xref: XAO:0000114 xref: ZFA:0000005 is_a: UBERON:0001981 ! blood vessel is_a: UBERON:0003509 ! implied link automatically realized ! arterial blood vessel relationship: part_of UBERON:0004572 ! arterial system [Term] id: UBERON:0001638 name: vein alt_id: UBERON:FMA_50723-MA_0000066-MA_0000067-MIAA_0000037-XAO_0000115-ZFA_0000082 def: "Any of the tubular branching vessels that carry blood from the capillaries toward the heart." [Wikipedia:Vein] comment: TODO - check with MA - vein vs venous blood vessel subset: uberon_slim subset: vertebrate_core synonym: "venous subtree" BROAD [] synonym: "venous tree organ part" EXACT [] synonym: "venous vessel" BROAD [] xref: AAO:0010212 xref: AEO:0000209 xref: BTO:0000234 xref: EFO:0000816 xref: EHDAA2:0003254 xref: EV:0100031 xref: FMA:50723 xref: GAID:492 xref: galen:Vein xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c2/Venous_system_en.svg/200px-Venous_system_en.svg.png xref: MA:0000067 xref: MAT:0000037 xref: MESH:A.07.231.908 xref: MIAA:0000037 xref: ncithesaurus:Vein xref: OG:0001252 xref: OpenCyc:Mx4rvVjkWpwpEbGdrcN5Y29ycA xref: SCTID:181367001 xref: TAO:0000082 xref: XAO:0000115 xref: ZFA:0000082 is_a: UBERON:0003920 ! venous blood vessel [Term] id: UBERON:0001639 name: hepatic portal vein alt_id: UBERON:FMA_50735-MA_0002132-ZFA_0005090 def: "The hepatic portal vein (often simply portal vein) is a vein in the abdominal cavity that drains blood from the gastrointestinal tract and spleen. It is usually formed by the confluence of the superior mesenteric and splenic veins, and also receives blood from the inferior mesenteric, gastric, and cystic veins. The hepatic portal vein is a major component of the hepatic portal system, one of the main portal venous systems in the body. Conditions involving the hepatic portal vein cause considerable illness and death. An important example of such a condition is elevated blood pressure in the hepatic portal vein. This condition, called portal hypertension, is a major complication of cirrhosis worldwide. [WP,unvetted]." [http://sourceforge.net/tracker/?func=detail&aid=3091300&group_id=76834&atid=1205376, Wikipedia:Hepatic_portal_vein] subset: uberon_slim subset: vertebrate_core synonym: "hepatic portal tree" EXACT [] synonym: "HPV" RELATED [] synonym: "liver portal vein" EXACT [OBOL:automatic] synonym: "portal vein" RELATED INCONSISTENT [] synonym: "portal vein of liver" EXACT [OBOL:automatic] synonym: "primary hepatic portal vein" RELATED [ZFA:0005090] synonym: "primary hepatic portal veins" RELATED [] xref: AAO:0010214 xref: FMA:50735 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/Gray591.png/200px-Gray591.png xref: MA:0002132 xref: OG:0000642 xref: TAO:0005090 xref: ZFA:0005090 is_a: UBERON:0001143 ! implied link automatically realized ! hepatic vein is_a: UBERON:0002017 ! portal vein relationship: part_of UBERON:0002107 ! liver [Term] id: UBERON:0001640 name: celiac artery alt_id: UBERON:FMA_50737-MA_0001931 def: "The celiac artery, also known as the celiac trunk, is the first major branch of the abdominal aorta. Branching from the aorta 'anterior to the upper part of T12' vertebra in humans, it is one of three anterior/ midline branches of the abdominal aorta." [Wikipedia:Celiac_artery] subset: uberon_slim synonym: "celiac tree" EXACT [] synonym: "coeliac artery" EXACT [Wikipedia:Celiac_artery] synonym: "coeliac axis" RELATED [Wikipedia:Celiac_artery] synonym: "coeliac trunck" RELATED [Wikipedia:Celiac_artery] synonym: "coeliac trunk" RELATED [Wikipedia:Celiac_artery] synonym: "truncus coeliacus" RELATED [Wikipedia:Celiac_artery] xref: EHDAA2:0004519 xref: FMA:50737 xref: GAID:483 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/65/Gray532.png/200px-Gray532.png xref: MA:0001931 xref: MESH:A.07.231.114.207 xref: ncithesaurus:Coeliac_Artery xref: SCTID:181340007 is_a: UBERON:0004573 {source="FMA"} ! systemic artery relationship: develops_from UBERON:0006002 {source="Wikipedia"} ! vitelline artery [Term] id: UBERON:0001641 name: transverse sinus alt_id: UBERON:FMA_50763-MA_0001868 def: "The transverse sinuses (left and right lateral sinuses), within a human head, are two areas beneath the brain, which allow blood veins to span the area, from the back of the head towards the nose. They drain from the straight sinus and superior sagittal sinus (along the top and back of the brain) to the sigmoid sinuses (at the center of the head), at the internal jugular vein. See diagram (at right): labeled under the brain as '' . The transverse sinuses are of large size and begin at the internal occipital protuberance; one, generally the right, being the direct continuation of the superior sagittal sinus, the other of the straight sinus. Each transverse sinus passes lateralward and forward, describing a slight curve with its convexity upward, to the base of the petrous portion of the temporal bone, and lies, in this part of its course, in the attached margin of the tentorium cerebelli; it then leaves the tentorium and curves downward and medialward to reach the jugular foramen, where it ends in the internal jugular vein. In its course it rests upon the squama of the occipital, the mastoid angle of the parietal, the mastoid part of the temporal, and, just before its termination, the jugular process of the occipital; the portion which occupies the groove on the mastoid part of the temporal is sometimes termed the sigmoid sinus. The transverse sinuses are frequently of unequal size, with the one formed by the superior sagittal sinus being the larger; they increase in size as they proceed, from back to center. On transverse section, the horizontal portion exhibits a prismatic form, the curved portion has a semicylindrical form. They receive the blood from the superior petrosal sinuses at the base of the petrous portion of the temporal bone; they communicate with the veins of the pericranium by means of the mastoid and condyloid emissary veins; and they receive some of the inferior cerebral and inferior cerebellar veins, and some veins from the diploë. The petrosquamous sinus, when present, runs backward along the junction of the squama and petrous portion of the temporal, and opens into the transverse sinus. [WP,unvetted]." [Wikipedia:Transverse_sinus] comment: todo - check su subset: uberon_slim synonym: "lateral sinus" EXACT [] xref: EMAPA:18637 xref: FMA:50763 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bd/Gray488_blue.gif/200px-Gray488_blue.gif xref: MA:0001868 xref: ncithesaurus:Transverse_Sinus xref: OpenCyc:Mx4rwDb62ZwpEbGdrcN5Y29ycA xref: SCTID:279262004 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001642 name: superior sagittal sinus alt_id: UBERON:FMA_50767-MA_0001867 def: "The superior sagittal sinus (also known as the superior longitudinal sinus), within a human cranium, is an area above/behind the brain, which allows blood veins to span the area, from the top of the head towards the back. It is believed that the cerebrospinal fluid drains through the arachnoid granulations into the dural venous sinuses of the superior sagittal sinus. [WP,unvetted]." [Wikipedia:Superior_sagittal_sinus] subset: uberon_slim xref: FMA:50767 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bd/Gray488_blue.gif/200px-Gray488_blue.gif xref: MA:0001867 xref: ncithesaurus:Superior_Sagittal_Sinus xref: OpenCyc:Mx4rv9naEJwpEbGdrcN5Y29ycA xref: SCTID:362075006 is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0006615 {source="MA"} ! venous sinus relationship: develops_from UBERON:0009968 {source="cjm"} ! primitive superior sagittal sinus [Term] id: UBERON:0001643 name: oculomotor nerve alt_id: UBERON:FMA_50864-MA_0001095-XAO_0003090-ZFA_0000405 def: "Cranial nerve which connects the midbrain to the extra-ocular and intra-ocular muscles. // Cranial nerve that runs to the eye muscles." [ISBN:0471209627, Wikipedia:Oculomotor_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "CN-III" RELATED [] synonym: "cranial nerve III" RELATED [] synonym: "nervus oculomotorius [iii]" EXACT [FMA:50864, FMA:TA] synonym: "occulomotor" RELATED [] synonym: "oculomotor III" EXACT [EHDAA2:0001284] synonym: "oculomotor III nerve" EXACT [] synonym: "Oculomotor nerve [III]" EXACT [] synonym: "oculomotor nerve tree" EXACT [] synonym: "third cranial nerve" EXACT [] xref: AAO:0010468 xref: BM:MB-IIIN xref: EHDAA:3736 xref: EHDAA2:0001284 xref: EMAPA:17574 xref: FMA:50864 xref: GAID:829 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/69/Gray776.png/200px-Gray776.png xref: MA:0001095 xref: MESH:A.08.800.800.120.600 xref: ncithesaurus:Oculomotor_Nerve xref: NIF_GrossAnatomy:birnlex_1646 xref: OG:0000692 xref: OpenCyc:Mx4rvj7pZpwpEbGdrcN5Y29ycA xref: SCTID:362456009 xref: TAO:0000405 xref: XAO:0003090 xref: ZFA:0000405 is_a: UBERON:0001785 ! cranial nerve relationship: develops_from_part_of UBERON:0005073 {source="GO"} ! preganglionic parasympathetic nervous system [Term] id: UBERON:0001644 name: trochlear nerve alt_id: UBERON:FMA_50865-MA_0001105-XAO_0003091-ZFA_0000600 def: "Cranial nerve that runs to the eye muscles." [ISBN:0471209627, Wikipedia:Trochlear_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "CN-IV" RELATED [] synonym: "cranial nerve IV" RELATED [] synonym: "fourth cranial nerve" EXACT [] synonym: "nervus trochlearis [iv]" EXACT [FMA:50865, FMA:TA] synonym: "pathetic nerve" RELATED [] synonym: "superior oblique nerve" EXACT [] synonym: "trochlear" RELATED [] synonym: "trochlear IV nerve" EXACT [] synonym: "Trochlear nerve [IV]" EXACT [] synonym: "trochlear nerve tree" EXACT [] xref: AAO:0010469 xref: BM:IVN xref: EHDAA2:0002090 xref: EMAPA:18218 xref: FMA:50865 xref: GAID:838 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/Trochlear_nerve.png/200px-Trochlear_nerve.png xref: MA:0001105 xref: MESH:A.08.800.800.120.800 xref: ncithesaurus:Trochlear_Nerve xref: NIF_GrossAnatomy:birnlex_1654 xref: OG:0000705 xref: OpenCyc:Mx4rvyeBQ5wpEbGdrcN5Y29ycA xref: SCTID:180939009 xref: TAO:0000600 xref: XAO:0003091 xref: ZFA:0000600 is_a: UBERON:0001785 ! cranial nerve [Term] id: UBERON:0001645 name: trigeminal nerve alt_id: UBERON:FMA_50866-MA_0001100-XAO_0003092-ZFA_0000697 def: "Cranial nerve that branches into the ophthalmic (supplying the skin of the nose and upper jaw) and the mandibular (supplying the lower jaw)." [ISBN:0471209627, Wikipedia:Trigeminal_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "CN-V" RELATED [] synonym: "cranial nerve V" RELATED [] synonym: "fifth cranial nerve" EXACT [] synonym: "nervus trigeminus" RELATED [BTO:0001072] synonym: "nervus trigeminus [v]" EXACT [FMA:50866, FMA:TA] synonym: "Trigeminal nerve [V]" EXACT [] synonym: "trigeminal nerve tree" EXACT [] synonym: "trigeminal V" EXACT [EHDAA2:0002084] synonym: "trigeminal v nerve" EXACT [] synonym: "trigeminus" RELATED [BTO:0001072] xref: AAO:0010470 xref: BM:VN xref: BTO:0001072 xref: EFO:0001402 xref: EHDAA:3738 xref: EHDAA2:0002084 xref: EMAPA:16797 xref: EMAPA:17576 xref: FMA:50866 xref: GAID:726 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/99/Gray778_Trigeminal.png/200px-Gray778_Trigeminal.png xref: MA:0001100 xref: MESH:A.08.800.800.120.760 xref: ncithesaurus:Trigeminal_Nerve xref: NIF_GrossAnatomy:birnlex_869 xref: OG:0000704 xref: OpenCyc:Mx4rwMF8CJwpEbGdrcN5Y29ycA xref: SCTID:362459002 xref: TAO:0000697 xref: XAO:0003092 xref: ZFA:0000697 is_a: UBERON:0001785 ! cranial nerve [Term] id: UBERON:0001646 name: abducens nerve alt_id: UBERON:FMA_50867-MA_0001087-XAO_0003093-ZFA_0000310 def: "Cranial nerve that runs to the eye muscles." [ISBN:0471209627, Wikipedia:Abducens_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "Abducens nerve [VI]" EXACT [] synonym: "abducens nerve tree" EXACT [] synonym: "abducens VI nerve" EXACT [] synonym: "abducent nerve" RELATED [] synonym: "Abducent nerve [VI]" EXACT [] synonym: "CN-VI" RELATED [] synonym: "cranial nerve VI" RELATED [] synonym: "lateral rectus nerve" EXACT [] synonym: "nervus abducens" EXACT [] synonym: "nervus abducens [vi]" EXACT [FMA:50867, FMA:TA] synonym: "sixth cranial nerve" EXACT [] xref: AAO:0010471 xref: BM:Pons-VIN xref: EHDAA2:0000103 xref: FMA:50867 xref: GAID:824 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/Abducens_nerve1.png/200px-Abducens_nerve1.png xref: MA:0001087 xref: MESH:A.08.800.800.120.030 xref: ncithesaurus:Abducens_Nerve xref: NIF_GrossAnatomy:birnlex_876 xref: OG:0000697 xref: OpenCyc:Mx4rvjl41ZwpEbGdrcN5Y29ycA xref: SCTID:180941005 xref: TAO:0000310 xref: XAO:0003093 xref: ZFA:0000310 is_a: UBERON:0001785 ! cranial nerve [Term] id: UBERON:0001647 name: facial nerve alt_id: UBERON:FMA_50868-MA_0001091-XAO_0003094-ZFA_0000664 def: "Cranial nerve that branches into the supraorbital (supplying the skin of the eye region and the lateral line organs here), the palatine (to the roof of the buccal cavity), and the hyomandibular (dividing into the jugular and mental branches)." [ISBN:0471209627, Wikipedia:Facial_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "branchiomeric cranial nerve" EXACT [] synonym: "CN-VII" RELATED [] synonym: "cranial nerve VII" RELATED [] synonym: "face nerve" EXACT [OBOL:automatic] synonym: "Facial nerve [VII]" EXACT [] synonym: "facial nerve tree" EXACT [] synonym: "facial VII" EXACT [EHDAA2:0000489] synonym: "facial VII nerve" EXACT [] synonym: "nerve of face" EXACT [OBOL:automatic] synonym: "nervus facialis" EXACT [ZFA:0000664] synonym: "nervus facialis [vii]" EXACT [FMA:50868, FMA:TA] synonym: "seventh cranial nerve" EXACT [] xref: AAO:0010472 xref: BM:Pons-VIIN xref: EHDAA:3729 xref: EHDAA2:0000489 xref: EMAPA:17569 xref: EMAPA:17796 xref: FMA:50868 xref: GAID:719 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1f/Cranial_nerve_VII.svg/200px-Cranial_nerve_VII.svg.png xref: MA:0001091 xref: MESH:A.08.800.800.120.250 xref: ncithesaurus:Facial_Nerve xref: NIF_GrossAnatomy:birnlex_827 xref: OG:0000706 xref: OpenCyc:Mx4rvthgEpwpEbGdrcN5Y29ycA xref: SCTID:362460007 xref: TAO:0000664 xref: XAO:0003094 xref: ZFA:0000664 is_a: UBERON:0001785 ! cranial nerve relationship: part_of UBERON:0001456 intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0001456 ! face relationship: develops_from_part_of UBERON:0005073 {source="GO"} ! preganglionic parasympathetic nervous system relationship: part_of UBERON:0001033 ! gustatory system [Term] id: UBERON:0001648 name: vestibulocochlear nerve alt_id: UBERON:FMA_50869-FMA_53431-MA_0001109-XAO_0003095-ZFA_0000247 def: "Cranial nerve that runs to the ear." [ISBN:0471209627, Wikipedia:Vestibulocochlear_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "acoustic nerve" EXACT [] synonym: "acoustic nerve (crosby)" EXACT [] synonym: "CN-VIII" EXACT [] synonym: "cochlear-vestibular nerve" EXACT [] synonym: "cochleovestibular nerve" EXACT [] synonym: "cranial nerve VIII" EXACT [] synonym: "eighth cranial nerve" EXACT [] synonym: "nervus vestibulocochlearis" RELATED [BTO:0003490] synonym: "nervus vestibulocochlearis [viii]" EXACT [FMA:50869, FMA:TA] synonym: "octaval nerve" RELATED [] synonym: "stato-acoustic nerve" EXACT [] synonym: "statoacoustic nerve" RELATED [] synonym: "Vestibulocochlear nerve [VIII]" EXACT [] synonym: "vestibulocochlear nerve tree" EXACT [] synonym: "vestibulocochlear VIII nerve" EXACT [] synonym: "VIIIth cranial nerve" EXACT [] xref: AAO:0010473 xref: BTO:0003490 xref: EHDAA2:0002194 xref: EMAPA:17801 xref: FMA:50869 xref: GAID:839 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Gray789.png/200px-Gray789.png xref: MA:0001109 xref: MESH:A.08.800.800.120.910 xref: ncithesaurus:Vestibulocochlear_Nerve xref: NIF_GrossAnatomy:birnlex_890 xref: OG:0000695 xref: OpenCyc:Mx4rvVjMFZwpEbGdrcN5Y29ycA xref: SCTID:180945001 xref: TAO:0000247 xref: XAO:0003095 xref: ZFA:0000247 is_a: UBERON:0001785 ! cranial nerve relationship: continuous_with UBERON:0001844 ! cochlea [Term] id: UBERON:0001649 name: glossopharyngeal nerve alt_id: UBERON:FMA_50870-MA_0001093-XAO_0003096-ZFA_0000668 def: "Cranial nerve that branches into the ramus communicans (to the skin), the pretrematic (to the walls of the pharynx and mouth, viscero-sensory fibers), and the larval post-trematic branch (lost in the adult)." [ISBN:0471209627, Wikipedia:Glossopharyngeal_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "CN-IX" RELATED [] synonym: "cranial nerve IX" RELATED [] synonym: "glossopharyngeal IX" EXACT [EHDAA2:0000709] synonym: "glossopharyngeal IX nerve" EXACT [] synonym: "Glossopharyngeal nerve [IX]" EXACT [] synonym: "glossopharyngeal nerve tree" EXACT [] synonym: "nervus glossopharyngeus" EXACT [ZFA:0000668] synonym: "nervus glossopharyngeus [ix]" EXACT [FMA:50870, FMA:TA] synonym: "ninth cranial nerve" EXACT [] xref: AAO:0010474 xref: BTO:0004979 xref: EHDAA:3733 xref: EHDAA2:0000709 xref: EMAPA:16795 xref: EMAPA:17268 xref: FMA:50870 xref: GAID:827 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5e/Gray791.png/200px-Gray791.png xref: MA:0001093 xref: MESH:A.08.800.800.120.290 xref: ncithesaurus:Glossopharyngeal_Nerve xref: NIF_GrossAnatomy:birnlex_899 xref: OG:0000701 xref: OpenCyc:Mx4rwIr5X5wpEbGdrcN5Y29ycA xref: SCTID:362465002 xref: TAO:0000668 xref: XAO:0003096 xref: ZFA:0000668 is_a: UBERON:0001785 {source="FMA"} ! cranial nerve relationship: part_of UBERON:0001033 ! gustatory system [Term] id: UBERON:0001650 name: hypoglossal nerve alt_id: UBERON:FMA_50871-MA_0001094 def: "Nerve that innervates all the intrinsic and all but one of the extrinsic muscles of the tongue." [GO:0021566, Wikipedia:Hypoglossal_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "cranial nerve XII" EXACT [NIF_GrossAnatomy:birnlex_820] synonym: "Hypoglossal nerve [XII]" EXACT [] synonym: "hypoglossal nerve tree" EXACT [] synonym: "hypoglossal XII" EXACT [EHDAA2:0000798] synonym: "hypoglossal XII nerve" EXACT [] synonym: "nervus hypoglossus [xii]" EXACT [FMA:50871, FMA:TA] synonym: "twelfth cranial nerve" EXACT [] xref: AAO:0010477 xref: BTO:0003386 xref: EHDAA:2859 xref: EHDAA2:0000798 xref: EMAPA:17269 xref: FMA:50871 xref: GAID:828 xref: MA:0001094 xref: MESH:A.08.800.800.120.330 xref: ncithesaurus:Hypoglossal_Nerve xref: NIF_GrossAnatomy:birnlex_820 xref: OG:0000693 xref: OpenCyc:Mx4rv9eWA5wpEbGdrcN5Y29ycA xref: SCTID:362471008 xref: XAO:0004215 is_a: UBERON:0001785 ! cranial nerve [Term] id: UBERON:0001651 name: right pulmonary artery alt_id: UBERON:FMA_50872-MA_0002500 def: "The pulmonary arteries carry blood from heart to the lungs. They are the only arteries (other than umbilical arteries in the fetus) that carry deoxygenated blood. In the human heart, the pulmonary trunk (pulmonary artery or main pulmonary artery) begins at the base of the right ventricle. It is short and wide - approximately 5 cm (2 inches) in length and 3 cm (1.2 inches) in diameter. It then branches into two pulmonary arteries (left and right), which deliver deoxygenated blood to the corresponding lung. [WP,unvetted]." [Wikipedia:Right_pulmonary_artery] comment: TODO - add class 'pulmonary artery tree organ' subset: uberon_slim synonym: "right main pulmonary artery" EXACT [] synonym: "right pulmonary arterial tree" EXACT [] xref: FMA:50872 xref: galen:RightPulmonaryArtery xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Alveoli_diagram.png/200px-Alveoli_diagram.png xref: MA:0002500 xref: ncithesaurus:Right_Pulmonary_Artery xref: SCTID:244235003 is_a: UBERON:0002012 ! pulmonary artery [Term] id: UBERON:0001652 name: left pulmonary artery alt_id: UBERON:FMA_50873-MA_0002032 def: "The pulmonary arteries carry blood from heart to the lungs. They are the only arteries (other than umbilical arteries in the fetus) that carry deoxygenated blood. In the human heart, the pulmonary trunk (pulmonary artery or main pulmonary artery) begins at the base of the right ventricle. It is short and wide - approximately 5 cm (2 inches) in length and 3 cm (1.2 inches) in diameter. It then branches into two pulmonary arteries (left and right), which deliver deoxygenated blood to the corresponding lung. [WP,unvetted]." [Wikipedia:Left_pulmonary_artery] comment: TODO - add class 'pulmonary artery tree organ' subset: uberon_slim synonym: "left main pulmonary artery" EXACT [] synonym: "left pulmonary arterial tree" EXACT [] xref: FMA:50873 xref: galen:LeftPulmonaryArtery xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Alveoli_diagram.png/200px-Alveoli_diagram.png xref: MA:0002032 xref: ncithesaurus:Left_Pulmonary_Artery xref: SCTID:244234004 is_a: UBERON:0002012 ! pulmonary artery [Term] id: UBERON:0001653 name: facial vein alt_id: UBERON:FMA_50874-MA_0002115 def: "The anterior facial vein (facial vein) commences at the side of the root of the nose, and is a direct continuation of the angular vein where it also receives a small nasal branch. It lies behind the facial artery and follows a less tortuous course. It receives blood from the external palatine vein before it either joins the anterior branch of the retromandibular vein to form the common facial vein, or drains directly into the internal jugular vein. [WP,unvetted]." [Wikipedia:Facial_vein] comment: Comment note MA also has 'anterior facial vein' subset: uberon_slim synonym: "face vein" EXACT [OBOL:automatic] synonym: "vein of face" EXACT [OBOL:automatic] xref: AAO:0010513 xref: EMAPA:19220 xref: FMA:50874 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray557.png/200px-Gray557.png xref: MA:0002115 xref: ncithesaurus:Facial_Vein xref: OpenCyc:Mx4rvziz3JwpEbGdrcN5Y29ycA xref: SCTID:181374006 is_a: UBERON:0001638 ! vein is_a: UBERON:0003496 ! implied link automatically realized ! head blood vessel relationship: part_of UBERON:0001456 intersection_of: UBERON:0001638 ! vein intersection_of: part_of UBERON:0001456 ! face [Term] id: UBERON:0001654 name: supra-orbital vein alt_id: UBERON:FMA_50904-MA_0002228 def: "The supraorbital vein begins on the forehead where it communicates with the frontal branch of the superficial temporal vein. It runs downward superficial to the Frontalis muscle, and joins the frontal vein at the medial angle of the orbit to form the angular vein. Previous to its junction with the frontal vein, it sends through the supraorbital notch into the orbit a branch which communicates with the ophthalmic vein; as this vessel passes through the notch, it receives the frontal diploic vein through a foramen at the bottom of the notch. The areas drained by this vessel are the forehead, eyebrow and upper eyelid. [WP,unvetted]." [Wikipedia:Supra-orbital_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "supraorbital vein" EXACT [] xref: FMA:50904 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray557.png/200px-Gray557.png xref: MA:0002228 xref: ncithesaurus:Supra-orbital_Vein xref: SCTID:152006005 is_a: UBERON:0001638 ! vein relationship: tributary_of UBERON:0001653 {source="FMA/obol"} ! facial vein [Term] id: UBERON:0001655 name: submental vein alt_id: UBERON:FMA_50925-MA_0002223 comment: This class was created automatically from a combination of ontologies xref: FMA:50925 xref: MA:0002223 xref: ncithesaurus:Submental_Vein xref: SCTID:152309009 is_a: UBERON:0001638 ! vein relationship: tributary_of UBERON:0001653 {source="FMA/obol"} ! facial vein [Term] id: UBERON:0001656 name: retromandibular vein alt_id: UBERON:FMA_50928-MA_0002117 def: "The retromandibular vein (temporomaxillary vein, posterior facial vein), formed by the union of the superficial temporal and maxillary veins, descends in the substance of the parotid gland, superficial to the external carotid artery but beneath the facial nerve, between the ramus of the mandible and the sternocleidomastoideus muscle. It divides into two branches: an anterior, which passes forward and unites with the anterior facial vein to form the common facial vein. a posterior, which is joined by the posterior auricular vein and becomes the external jugular vein. [WP,unvetted]." [Wikipedia:Retromandibular_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "posterior facial vein" EXACT [] xref: FMA:50928 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray557.png/200px-Gray557.png xref: MA:0002117 xref: ncithesaurus:Temporo-maxillary_Vein xref: OpenCyc:Mx4rv0bn95wpEbGdrcN5Y29ycA xref: SCTID:151299003 is_a: UBERON:0001653 ! facial vein relationship: tributary_of UBERON:0001101 {source="FMA/obol"} ! external jugular vein relationship: tributary_of UBERON:0001587 {source="FMA/obol"} ! subclavian vein [Term] id: UBERON:0001657 name: superficial temporal vein alt_id: UBERON:FMA_50932-MA_0002242 def: "The superficial temporal vein is a vein of the side of the head. [WP,unvetted]." [Wikipedia:Superficial_temporal_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: BTO:0003748 xref: EMAPA:19315 xref: FMA:50932 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray557.png/200px-Gray557.png xref: MA:0002242 xref: ncithesaurus:Superficial_Temporal_Vein xref: OpenCyc:Mx4rvmANWZwpEbGdrcN5Y29ycA xref: SCTID:150087005 is_a: UBERON:0001671 ! temporal vein relationship: tributary_of UBERON:0001101 {source="FMA/obol"} ! external jugular vein relationship: tributary_of UBERON:0001587 {source="FMA/obol"} ! subclavian vein relationship: tributary_of UBERON:0001656 {source="FMA/obol"} ! retromandibular vein [Term] id: UBERON:0001658 name: middle temporal vein alt_id: UBERON:FMA_50935-MA_0002241 comment: This class was created automatically from a combination of ontologies xref: FMA:50935 xref: MA:0002241 xref: SCTID:151400007 is_a: UBERON:0001671 ! temporal vein relationship: tributary_of UBERON:0001101 {source="FMA/obol"} ! external jugular vein relationship: tributary_of UBERON:0001587 {source="FMA/obol"} ! subclavian vein relationship: tributary_of UBERON:0001656 {source="FMA/obol"} ! retromandibular vein [Term] id: UBERON:0001659 name: transverse facial vein alt_id: UBERON:FMA_50938-MA_0002247 def: "The superficial temporal vein is a vein of the side of the head. [WP,unvetted]." [Wikipedia:Transverse_facial_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:50938 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray557.png/200px-Gray557.png xref: MA:0002247 xref: SCTID:151501009 is_a: UBERON:0001638 ! vein relationship: tributary_of UBERON:0001101 {source="FMA/obol"} ! external jugular vein relationship: tributary_of UBERON:0001587 {source="FMA/obol"} ! subclavian vein relationship: tributary_of UBERON:0001656 {source="FMA/obol"} ! retromandibular vein [Term] id: UBERON:0001660 name: maxillary vein alt_id: UBERON:FMA_50941-MA_0002169 def: "The maxillary veins (internal maxillary vein in older sources) consist of a short trunk which accompanies the first part of the internal maxillary artery. It is formed by a confluence of the veins of the pterygoid plexus, and passes backward between the sphenomandibular ligament and the neck of the mandible, and unites with the superficial temporal vein to form the retromandibular vein. [WP,unvetted]." [Wikipedia:Maxillary_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:50941 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray557.png/200px-Gray557.png xref: MA:0002169 xref: ncithesaurus:Internal_Maxillary_Vein xref: OpenCyc:Mx4rvlDSc5wpEbGdrcN5Y29ycA xref: SCTID:29972009 is_a: UBERON:0001638 ! vein relationship: tributary_of UBERON:0001101 {source="FMA/obol"} ! external jugular vein relationship: tributary_of UBERON:0001587 {source="FMA/obol"} ! subclavian vein relationship: tributary_of UBERON:0001656 {source="FMA/obol"} ! retromandibular vein [Term] id: UBERON:0001661 name: deep temporal vein alt_id: UBERON:FMA_50954-MA_0002240 comment: This class was created automatically from a combination of ontologies xref: FMA:50954 xref: MA:0002240 xref: ncithesaurus:Deep_Temporal_Vein xref: SCTID:798000 is_a: UBERON:0001671 ! temporal vein [Term] id: UBERON:0001662 name: anterior auricular vein alt_id: UBERON:FMA_50956-MA_0002083 def: "The anterior auricular veins are veins which drain the anterior aspect of the external ear. [WP,unvetted]." [Wikipedia:Anterior_auricular_veins] comment: This class was created automatically from a combination of ontologies xref: FMA:50956 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray557.png/200px-Gray557.png xref: MA:0002083 xref: ncithesaurus:Anterior_Auricular_Vein xref: SCTID:151602009 is_a: UBERON:0006197 ! auricular vein relationship: tributary_of UBERON:0001101 {source="FMA/obol"} ! external jugular vein relationship: tributary_of UBERON:0001587 {source="FMA/obol"} ! subclavian vein relationship: tributary_of UBERON:0001656 {source="FMA/obol"} ! retromandibular vein [Term] id: UBERON:0001663 name: cerebral vein alt_id: UBERON:FMA_50981-MA_0002096 def: "The cerebral veins are divisible into external and internal groups according to the outer surfaces or the inner parts of the hemispheres they drain into. The external veins are the superior cerebral veins, inferior cerebral veins, and middle cerebral vein. [WP,unvetted]." [Wikipedia:Cerebral_veins] comment: This class was created automatically from a combination of ontologies xref: FMA:50981 xref: GAID:530 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9f/Gray568.png/200px-Gray568.png xref: MA:0002096 xref: MESH:A.07.231.908.155 xref: ncithesaurus:Cerebral_Vein xref: SCTID:244392000 xref: XAO:0004160 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001664 name: inferior cerebral vein alt_id: UBERON:FMA_50986-MA_0002097 def: "The inferior cerebral veins, of small size, drain the under surfaces of the hemispheres. Those on the orbital surface of the frontal lobe join the superior cerebral veins, and through these open into the superior sagittal sinus. Those of the temporal lobe anastomose with the middle cerebral and basal veins, and join the cavernous, sphenoparietal, and superior petrosal sinuses. [WP,unvetted]." [Wikipedia:Inferior_cerebral_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:50986 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/25/Gray517.png/200px-Gray517.png xref: MA:0002097 xref: SCTID:244395003 is_a: UBERON:0001663 ! cerebral vein [Term] id: UBERON:0001665 name: triceps surae alt_id: UBERON:FMA_51062-MA_0002400 def: "The triceps surae is a pair of muscles located at the calf - the gastrocnemius and the soleus. These muscles both insert into the calcaneus, the bone of the heel of the human foot, and form the major part of the muscle of the back part of the lower leg, commonly known as the calf muscle. The triceps surae is connected to the foot through the Achilles tendon, and has 3 heads deriving from the 2 major masses of muscle. The superficial portion (the gastrocnemius) gives off 2 heads attaching to the base of the femur directly above the knee. The deep (profundis) mass of muscle (the soleus) forms the remaining head which attaches to the superior posterior area of the tibia. The triceps surae is innervated by the tibial nerve, specifically, nerve roots L5–S2. [WP,unvetted]." [Wikipedia:Triceps_surae] comment: A set of muscles in FMA, a single organ in MA subset: uberon_slim synonym: "calf muscle" RELATED [Wikipedia:Triceps_surae_muscle] synonym: "gastrosoleus" RELATED [Wikipedia:Triceps_surae_muscle] synonym: "gastrosoleus complex" RELATED [Wikipedia:Triceps_surae_muscle] synonym: "sural triceps" RELATED [] xref: FMA:51062 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/57/Illu_lower_extremity_muscles.jpg/200px-Illu_lower_extremity_muscles.jpg xref: MA:0002400 xref: ncithesaurus:Triceps_Surae is_a: UBERON:0001630 {source="MA"} ! muscle organ is_a: UBERON:0004256 ! implied link automatically realized ! hindlimb zeugopod muscle relationship: part_of UBERON:0003823 ! hindlimb zeugopod [Term] id: UBERON:0001666 name: flexor digitorum longus alt_id: UBERON:FMA_51071-MA_0002299 def: "The Flexor digitorum longus is situated on the tibial side of the leg. At its origin it is thin and pointed, but it gradually increases in size as it descends. This muscle serves to curl the second, third, fourth, and fifth toes (flexion of phalanges II-V). [WP,unvetted]." [Wikipedia:Flexor_digitorum_longus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: BTO:0000466 xref: FMA:51071 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/92/Gray442.png/200px-Gray442.png xref: MA:0002299 xref: ncithesaurus:Flexor_Digitorum_Longus xref: SCTID:181703002 is_a: UBERON:0001383 ! muscle of leg [Term] id: UBERON:0001667 name: tibialis posterior alt_id: UBERON:FMA_51099-MA_0002394 def: "The Tibialis posterior is the most central of all the leg muscles, and is located in the posterior compartment of the leg. It is the key stabilizing muscle of the lower leg. [WP,unvetted]." [Wikipedia:Tibialis_posterior] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "ibialis posticus" RELATED [BTO:0000867] synonym: "posterior tibialis" RELATED [BTO:0000867] synonym: "tibialis caudalis" EXACT [] synonym: "tibialis posterior muscle" RELATED [BTO:0000867] xref: BTO:0000867 xref: FMA:51099 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/92/Gray442.png/200px-Gray442.png xref: MA:0002394 xref: ncithesaurus:Tibialis_Caudalis is_a: UBERON:0008230 ! tibialis [Term] id: UBERON:0001668 name: cerebellar vein alt_id: UBERON:FMA_51227-MA_0002093 def: "Cerebellar veins are veins which drain the cerebellum. More specifically, they are: Superior cerebellar veins Inferior cerebellar veins [WP,unvetted]." [Wikipedia:Cerebellar_veins] comment: This class was created automatically from a combination of ontologies synonym: "cerebellum vein" EXACT [OBOL:automatic] synonym: "epencephalon-1 vein" EXACT [OBOL:automatic] synonym: "vein of cerebellum" EXACT [OBOL:automatic] synonym: "vein of epencephalon-1" EXACT [OBOL:automatic] xref: FMA:51227 xref: MA:0002093 xref: ncithesaurus:Cerebellar_Vein xref: SCTID:40693009 is_a: UBERON:0001638 ! vein is_a: UBERON:0002946 ! implied link automatically realized ! regional part of cerebellum is_a: UBERON:0003499 ! implied link automatically realized ! brain blood vessel relationship: part_of UBERON:0002037 intersection_of: UBERON:0001638 ! vein intersection_of: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0001669 name: superior cerebellar vein alt_id: UBERON:FMA_51232-MA_0002095 def: "The superior cerebellar veins pass partly forward and medialward, across the superior vermis, to end in the straight sinus and the internal cerebral veins, partly lateralward to the transverse and superior petrosal sinuses. [WP,unvetted]." [Wikipedia:Superior_cerebellar_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "vein of superior cerebellar hemisphere" EXACT [] xref: FMA:51232 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/97/Gray704.png/200px-Gray704.png xref: MA:0002095 xref: SCTID:64307009 is_a: UBERON:0001668 ! cerebellar vein [Term] id: UBERON:0001670 name: inferior cerebellar vein alt_id: UBERON:FMA_51233-MA_0002094 def: "The inferior cerebellar veins are of large size, end in the transverse, superior petrosal, and occipital sinuses. [WP,unvetted]." [Wikipedia:Inferior_cerebellar_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "inferior vein of cerebellar hemisphere" EXACT [] xref: FMA:51233 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/97/Gray704.png/200px-Gray704.png xref: MA:0002094 xref: SCTID:69104006 is_a: UBERON:0001668 ! cerebellar vein [Term] id: UBERON:0001671 name: temporal vein alt_id: UBERON:FMA_51302-MA_0002239 def: "The superficial temporal vein is a vein of the side of the head. [WP,unvetted]." [Wikipedia:Temporal_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:51302 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray557.png/200px-Gray557.png xref: MA:0002239 xref: ncithesaurus:Temporal_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001672 name: anterior cerebral vein alt_id: UBERON:FMA_51306-ZFA_0001067 comment: This class was created automatically from a combination of ontologies subset: vertebrate_core synonym: "ACeV" RELATED [] synonym: "rostral cerebral vein" RELATED [] xref: FMA:51306 xref: SCTID:55155007 xref: TAO:0001067 xref: XAO:0004158 xref: ZFA:0001067 is_a: UBERON:0001663 ! cerebral vein is_a: UBERON:0003496 ! implied link automatically realized ! head blood vessel relationship: part_of UBERON:0002200 ! vasculature of head [Term] id: UBERON:0001673 name: central retinal vein alt_id: UBERON:FMA_51799-MA_0002213 def: "The central retinal vein (retinal vein) is a short vein that runs through the optic nerve and drains blood from the capillaries of the retina into the larger veins outside the eye. The anatomy of the veins of the orbit of the eye varies between individuals, and in some the central retinal vein drains into the superior ophthalmic vein, and in some it drains directly into the cavernous sinus. [WP,unvetted]." [Wikipedia:Central_retinal_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "retinal vein" EXACT [] xref: FMA:51799 xref: GAID:524 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2d/Gray572.png/200px-Gray572.png xref: MA:0002213 xref: MESH:A.07.231.611.773 xref: ncithesaurus:Retinal_Vein xref: SCTID:280913005 is_a: UBERON:0001638 ! vein relationship: tributary_of UBERON:0003712 {source="FMA/obol"} ! cavernous sinus relationship: tributary_of UBERON:0005486 {source="FMA/obol"} ! venous dural sinus [Term] id: UBERON:0001674 name: masseteric vein alt_id: UBERON:FMA_52519-MA_0002167 comment: This class was created automatically from a combination of ontologies xref: FMA:52519 xref: MA:0002167 xref: ncithesaurus:Masseteric_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001675 name: trigeminal ganglion alt_id: UBERON:FMA_52618-XAO_0000427-XAO_0000428-ZFA_0000295 def: "A prominent collection of touch-sensory neurons of the trigeminal or fifth cranial nerve, positioned beside the brain between the eye and the ear. Kimmel et al, 1995." [Wikipedia:Trigeminal_ganglion, ZFIN:curator] subset: uberon_slim subset: vertebrate_core synonym: "5th ganglion" EXACT [ZFA:0000295] synonym: "fifth ganglion" EXACT [ZFA:0000295] synonym: "ganglion of trigeminal nerve" RELATED [BTO:0001231] synonym: "ganglion trigeminale" RELATED [BTO:0001231] synonym: "Gasser's ganglion" RELATED [BTO:0001231] synonym: "gasserian ganglia" RELATED PLURAL [Wikipedia:Trigeminal_ganglion] synonym: "gasserian ganglion" EXACT [Wikipedia:Trigeminal_ganglion] synonym: "gV" RELATED [] synonym: "semilunar ganglion" EXACT [] synonym: "trigeminal ganglia" RELATED PLURAL [] synonym: "trigeminal V ganglion" EXACT [MA:0001080] synonym: "trigeminus ganglion" RELATED [] xref: AAO:0011107 xref: BTO:0001231 xref: EFO:0000903 xref: EHDAA:2113 xref: EHDAA2:0002085 xref: EMAPA:16797 xref: FMA:52618 xref: GAID:725 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/69/Gray776.png/200px-Gray776.png xref: MA:0001080 xref: MAT:0000511 xref: MESH:A.08.340.390.850 xref: ncithesaurus:Trigeminal_Ganglion xref: OG:0000694 xref: SCTID:244449009 xref: TAO:0000295 xref: XAO:0000427 xref: XAO:0000428 xref: ZFA:0000295 is_a: UBERON:0001714 ! ganglion of cranial nerve is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: develops_from UBERON:0003070 ! trigeminal placode relationship: develops_from UBERON:0005563 ! trigeminal neural crest [Term] id: UBERON:0001676 name: occipital bone alt_id: UBERON:FMA_52735-MA_0001468 def: "A saucer-shaped membrane bone situated at the back and lower part of the cranium, is trapezoid in shape and curved on itself. It is pierced by a large oval aperture, the foramen magnum, through which the cranial cavity communicates with the vertebral canal." [Wikipedia:Occipital_bone] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: EMAPA:25112 xref: FMA:52735 xref: GAID:227 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/27/Gray194.png/200px-Gray194.png xref: MA:0001468 xref: MESH:A.02.835.232.781.572 xref: ncithesaurus:Occipital_Bone xref: OpenCyc:Mx4rwQtsiZwpEbGdrcN5Y29ycA xref: SCTID:181796003 is_a: UBERON:0001474 ! bone is_a: UBERON:0003465 ! implied link automatically realized ! chondrocranium bone relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0002241 ! chondrocranium [Term] id: UBERON:0001677 name: sphenoid bone alt_id: UBERON:FMA_52736-MA_0001472 def: "an unpaired bone situated at the base of the skull in front of the temporal bone and basilar part of the occipital bone. The sphenoid bone is one of the seven bones that articulate to form the orbit. Its shape somewhat resembles that of a butterfly or bat with its wings extended." [Wikipedia:Sphenoid_bone] comment: part of viscerocranium in FMA, part of chondrocranium in MA subset: uberon_slim synonym: "butterfly bone" RELATED [Wikipedia:Sphenoid_bone] synonym: "os sphenoidale" RELATED [Wikipedia:Sphenoid_bone] synonym: "os sphenoidale" EXACT [FMA:52736, FMA:TA] synonym: "os sphenoidum" RELATED [Wikipedia:Sphenoid_bone] synonym: "sphenoid" EXACT [] synonym: "sphenoidal bone" EXACT [] xref: EMAPA:18340 xref: FMA:52736 xref: GAID:230 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Illu_cranial_bones2.jpg/200px-Illu_cranial_bones2.jpg xref: MA:0001472 xref: MESH:A.02.835.232.781.802 xref: ncithesaurus:Sphenoid_Bone xref: OpenCyc:Mx4rwAU9XpwpEbGdrcN5Y29ycA xref: SCTID:272676008 is_a: UBERON:0003465 ! implied link automatically realized ! chondrocranium bone is_a: UBERON:0008193 {source="FMA"} ! pneumatized bone relationship: develops_from UBERON:0009193 {source="cjm"} ! sphenoid bone cartilage condensation relationship: part_of UBERON:0002241 ! chondrocranium [Term] id: UBERON:0001678 name: temporal bone alt_id: UBERON:FMA_52737-MA_0001476 def: "The temporal bones are situated at the sides and base of the skull, and lateral to the temporal lobes of the cerebrum." [Wikipedia:Temporal_bone] comment: The temporal bone consists of four parts: * Squama temporalis * Mastoid portion * Petrous portion (Petrosal ridge) * Tympanic part. Note the Temporal bone is not explicitly categorized to a part of the cranium in FMA. subset: uberon_slim xref: EHDAA:6035 xref: EMAPA:17682 xref: EMAPA:18020 xref: FMA:52737 xref: GAID:232 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Illu_cranial_bones2.jpg/200px-Illu_cranial_bones2.jpg xref: MA:0001476 xref: MESH:A.02.835.232.781.885 xref: ncithesaurus:Temporal_Bone xref: OG:0000800 xref: OpenCyc:Mx4rvbkAk5wpEbGdrcN5Y29ycA xref: SCTID:181795004 is_a: UBERON:0003465 ! implied link automatically realized ! chondrocranium bone is_a: UBERON:0008193 {source="FMA"} ! pneumatized bone relationship: part_of UBERON:0002241 ! chondrocranium [Term] id: UBERON:0001679 name: ethmoid alt_id: UBERON:FMA_52740-MA_0001483-ZFA_0000323 def: "a bone in the skull that separates the nasal cavity from the brain. As such, it is located at the roof of the nose, between the two orbits. The cubical bone is lightweight due to a spongy construction. The ethmoid bone is one of the bones that makes up the orbit of the eye[WP]" [Wikipedia:Ethmoid] comment: Note the WP states the Neurocranium contains the ethmoid bone, both MA and FMA place the ethmoid as part of the viscerocranium. FMA also has it in neurocranium (via basicranium). Ideally we would have non-overlapping divisions of the skull, but for now we follow FMA subset: uberon_slim synonym: "ethmoid bone" EXACT [] synonym: "ethmoidal bone" EXACT [MP:0000101] synonym: "os ethmoidale" EXACT [FMA:52740, FMA:TA] xref: BTO:0004140 xref: EMAPA:19018 xref: FMA:52740 xref: GAID:212 xref: MA:0001483 xref: MESH:A.02.835.232.781.292 xref: ncithesaurus:Ethmoid_Bone xref: OG:0001317 xref: OpenCyc:Mx4rvuUPh5wpEbGdrcN5Y29ycA xref: SCTID:272674006 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0003462 ! implied link automatically realized ! viscerocranium bone is_a: UBERON:0004766 ! implied link automatically realized ! cranial bone is_a: UBERON:0008193 {source="FMA"} ! pneumatized bone relationship: part_of UBERON:0001704 ! viscerocranium relationship: part_of UBERON:0002517 ! basicranium [Term] id: UBERON:0001680 name: lacrimal bone alt_id: UBERON:FMA_52741-MA_0001486 def: "the smallest and most fragile bone of the face, is situated at the front part of the medial wall of the orbit. It has two surfaces and four borders. In early lobe-finned fishes and ancestral tetrapods, the lacrimal bone is a relatively large and robust bone, running from the orbit to the nostrils. It forms part of the side of the face, between the nasal bones and the maxilla. In primitive forms, it is often accompanied by a much smaller septomaxilla bone, lying immediately behind the nasal opening, but this is lost in most modern species. The lacrimal bone is often smaller in living vertebrates, and is no longer always directly associated with the nasal opening, although it retains its connection with the orbit. The bone is entirely absent in living amphibians, as well as some reptilian species." [Wikipedia:Lacrimal_bone] comment: In early lobe-finned fishes and ancestral tetrapods, the lacrimal bone is a relatively large and robust bone, running from the orbit to the nostrils. It forms part of the side of the face, between the nasal bones and the maxilla. In primitive forms, it is often accompanied by a much smaller septomaxilla bone, lying immediately behind the nasal opening, but this is lost in most modern species. The lacrimal bone is often smaller in living vertebrates, and is no longer always directly associated with the nasal opening, although it retains its connection with the orbit. The bone is entirely absent in living amphibians, as well as some reptilian species[WP, ISBN 0-03-910284-X] subset: uberon_slim subset: vertebrate_core synonym: "infraorbital 1" RELATED SENSU [OG:0001149, ZFA:0000223] synonym: "lacrimal" BROAD [] synonym: "lacrymal bone" EXACT [] xref: FMA:52741 xref: MA:0001486 xref: ncithesaurus:Lacrimal_Bone xref: OG:0001149 xref: SCTID:272675007 xref: ZFA:0000223 is_a: UBERON:0003462 ! implied link automatically realized ! viscerocranium bone is_a: UBERON:0008001 {source="FMA"} ! irregular bone relationship: part_of UBERON:0001704 ! viscerocranium [Term] id: UBERON:0001681 name: nasal bone alt_id: UBERON:FMA_52745-MA_0001494-ZFA_0000365 def: "One of two small oblong bones, varying in size and form in different individuals; they are placed side by side at the middle and upper part of the face, and form, by their junction, 'the bridge' of the nose[WP]. Paired dermal bones, likened to a bone tube, positioned lateral to the supraethmoid. Nasal bones are transversed by the anterior most part of the supraorbital canals and bear one neuromast foramen in zebrafish[ZFA]." [Wikipedia:Nasal_bone, ZFIN:curator] comment: In primitive bony fish and tetrapods, the nasal bones are the most anterior of a set of four paired bones forming the roof of the skull, being followed in sequence by the frontals, the parietals, and the postparietals. Their form in living species is highly variable, depending on the shape of the head, but they generally form the roof of the snout or beak, running from the nostrils to a position short of the orbits. In most animals, they are generally therefore proportionally larger than in humans or great apes, because of the shortened faces of the latter. Turtles, unusually, lack nasal bones, with the prefrontal bones of the orbit reaching all the way to the nostrils (ISBN 0-03-910284-X) subset: uberon_slim subset: vertebrate_core xref: AAO:0000312 xref: EMAPA:19202 xref: FMA:52745 xref: GAID:222 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/77/Illu_facial_bones.jpg/200px-Illu_facial_bones.jpg xref: MA:0001494 xref: MESH:A.02.835.232.781.324.665 xref: ncithesaurus:Nasal_Bone xref: OG:0001370 xref: OpenCyc:Mx4rwGOTZJwpEbGdrcN5Y29ycA xref: SCTID:181801008 xref: TAO:0000365 xref: ZFA:0000365 is_a: UBERON:0002514 ! intramembranous bone is_a: UBERON:0003462 ! implied link automatically realized ! viscerocranium bone relationship: part_of UBERON:0000004 ! olfactory apparatus relationship: part_of UBERON:0001704 ! viscerocranium [Term] id: UBERON:0001682 name: palatine bone alt_id: UBERON:FMA_52746-MA_0001495 def: "A bone situated at the back part of the nasal cavity between the maxilla and the pterygoid process of the sphenoid. It contributes to the walls of three cavities: the floor and lateral wall of the nasal cavity, the roof of the mouth, and the floor of the orbit; it enters into the formation of two fossæ, the pterygopalatine and pterygoid fossæ; and one fissure, the inferior orbital fissure. he palatine bone somewhat resembles the letter L, and consists of a Horizontal plate of palatine bone and a Perpendicular plate of palatine bone and three outstanding processes—viz., the Pyramidal process of palatine bone, which is directed backward and lateralward from the junction of the two parts, and the Orbital process of palatine bone and Sphenoidal process of palatine bone, which surmount the vertical part, and are separated by a deep notch, the sphenopalatine notch. The human palatine articulates with six bones: the sphenoid, ethmoid, maxilla, inferior nasal concha, vomer and opposite palatine. In bony fish the palatine bone consists of the perpendicular plate only, lying on the inner edge of the maxilla[WP]." [Wikipedia:Palatine_bone] subset: uberon_slim xref: FMA:52746 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/44/Gray996.png/200px-Gray996.png xref: MA:0001495 xref: ncithesaurus:Palatine_Bone xref: SCTID:244654005 is_a: UBERON:0003462 ! implied link automatically realized ! viscerocranium bone is_a: UBERON:0008001 {source="FMA"} ! irregular bone relationship: part_of UBERON:0001704 ! viscerocranium [Term] id: UBERON:0001683 name: zygomatic bone alt_id: UBERON:FMA_52747-MA_0001497 def: "The zygomatic bone (cheekbone, malar bone) is a paired bone of the human skull. It articulates with the maxilla, the temporal bone, the sphenoid bone and the frontal bone. The zygomatic is homologous to the jugal bone of other tetrapods. It is situated at the upper and lateral part of the face and forms the prominence of the cheek, part of the lateral wall and floor of the orbit, and parts of the temporal and infratemporal fossae [Fig. 1]. It presents a malar and a temporal surface; four processes, the frontosphenoidal, orbital, maxillary, and temporal; and four borders. The term zygomatic derives from the Greek zygoma meaning 'yoke'. The zygomatic bone is occasionally referred to as the zygoma, but this term may also refer to the zygomatic arch or the zygomatic process. [WP,unvetted]." [Wikipedia:Zygomatic_bone] comment: HOG says is homologous to infraorbital 3, which is a dermal bone in dermatocranium. part of viscerocranium, chondrocranium in MA. subset: uberon_slim synonym: "cheek bone" EXACT [] synonym: "jugal bone" RELATED [GAID:225, Wikipedia:Zygomatic_bone] synonym: "jugale" RELATED SENSU [] synonym: "malar bone" EXACT [FMA:52747] synonym: "orbital bone" EXACT [] synonym: "os zygomaticum" EXACT [FMA:52747, FMA:TA] synonym: "os zygomaticus" RELATED [Wikipedia:Zygomatic_bone] synonym: "zygoma" RELATED [GAID:225] xref: EMAPA:25111 xref: FMA:52747 xref: GAID:225 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2d/Gray164.png/200px-Gray164.png xref: MA:0001497 xref: OG:0001638 xref: SCTID:272683001 is_a: UBERON:0003462 ! implied link automatically realized ! viscerocranium bone is_a: UBERON:0003465 ! implied link automatically realized ! chondrocranium bone is_a: UBERON:0008001 {source="FMA"} ! irregular bone relationship: part_of UBERON:0001567 ! cheek relationship: part_of UBERON:0001704 ! viscerocranium relationship: part_of UBERON:0002241 ! chondrocranium [Term] id: UBERON:0001684 name: mandible alt_id: UBERON:FMA_52748-MA_0001487 def: "The bone that forms the lower jaw and holds the lower teeth in place[WP]." [Wikipedia:Mandible] comment: 'mandible' also refers to either the upper or lower part of the beak in birds. Note in ZFA mandible/lower jaw are the same class. subset: uberon_slim synonym: "inferior maxillary bone" EXACT [] synonym: "lower jaw bone" BROAD SENSU [] synonym: "lower mandibula" NARROW SENSU [Wikipedia:Mandible] synonym: "mandibula" RELATED [BTO:0001748] synonym: "mandibulla" EXACT [] xref: BTO:0001748 xref: EFO:0001965 xref: EHDAA:8007 xref: EHDAA2:0001059 xref: EMAPA:18290 xref: FMA:52748 xref: GAID:68 xref: galen:Mandible xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray176.png/200px-Gray176.png xref: MA:0001487 xref: MESH:A.02.835.232.781.324.502.632 xref: ncithesaurus:Mandible xref: OG:0000510 xref: SCTID:181812008 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0004768 ! implied link automatically realized ! bone of lower jaw is_a: UBERON:0008001 {source="FMA"} ! irregular bone relationship: develops_from UBERON:0005867 ! mandibular prominence relationship: part_of UBERON:0001710 ! lower jaw [Term] id: UBERON:0001685 name: hyoid bone alt_id: UBERON:FMA_52749-MA_0001484 def: "The hyoid bone (lingual bone) (Latin os hyoideum) is a horseshoe shaped bone situated in the anterior midline of the neck between the chin and the thyroid cartilage. At rest, it lies at the level of the base of the mandible in the front and the third cervical vertebra behind. It is the only bone in the human skeleton not articulated to any other bone. It is held in place by thyroid ligaments. The hyoid bone provides attachment to the muscles of the floor of the mouth and the tongue above, the larynx below, and the epiglottis and pharynx behind. Its name is derived from the Greek word hyoeides meaning 'shaped like the letter upsilon' (υ). [WP,unvetted]." [Wikipedia:Hyoid_bone] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "greater cornua" RELATED [Wikipedia:Hyoid_bone] synonym: "greater horn of the hyoid" RELATED [Wikipedia:Hyoid_bone] synonym: "hyoid" RELATED [Wikipedia:Hyoid_bone] synonym: "hyoid bone" RELATED [Wikipedia:Hyoid_bone] synonym: "hyoideum" RELATED [Wikipedia:Hyoid_bone] synonym: "lingual bone" RELATED [Wikipedia:Hyoid_bone] synonym: "os hyoideum" RELATED [Wikipedia:Hyoid_bone] xref: AAO:0000684 xref: EMAPA:18650 xref: EMAPA:18840 xref: FMA:52749 xref: GAID:197 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1f/Gray186.png/200px-Gray186.png xref: MA:0001484 xref: MESH:A.02.835.232.409 xref: ncithesaurus:Hyoid_Bone xref: OG:0001325 xref: SCTID:263352000 is_a: UBERON:0003462 ! implied link automatically realized ! viscerocranium bone is_a: UBERON:0008001 {source="FMA"} ! irregular bone relationship: part_of UBERON:0001704 ! viscerocranium [Term] id: UBERON:0001686 name: auditory ossicle alt_id: UBERON:FMA_52750-MA_0000254-XAO_0000214 def: "The ossicles (also called auditory ossicles) are the three smallest bones in the human body. They are contained within the middle ear space and serve to transmit sounds from the air to the fluid-filled labyrinth. The absence of the auditory ossicles would constitute a moderate-to-severe hearing loss. The term 'ossicles' literally means 'tiny bones' and commonly refers to the auditory ossicles, though the term may refer to any small bone throughout the body. [WP,unvetted]." [Wikipedia:Auditory_ossicle] subset: uberon_slim synonym: "auditory bone" EXACT [] synonym: "auditory ossicle" RELATED [MA:0000254] synonym: "ear bone" RELATED [MA:0000254] synonym: "ossicle" BROAD [EMAPA:17824, Wikipedia:Auditory_ossicle] xref: AAO:0011015 xref: EHDAA:5697 xref: EHDAA2:0001183 xref: EMAPA:17824 xref: EV:0100360 xref: FMA:52750 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b0/Illu_auditory_ossicles.jpg/200px-Illu_auditory_ossicles.jpg xref: MA:0000254 xref: ncithesaurus:Auditory_Ossicle xref: OG:0000461 xref: XAO:0000214 is_a: UBERON:0003457 ! implied link automatically realized ! head bone is_a: UBERON:0008001 {source="FMA"} ! irregular bone relationship: part_of UBERON:0001756 {source="MA"} ! middle ear [Term] id: UBERON:0001687 name: stapes alt_id: UBERON:FMA_52751-MA_0001217 def: "The stapes or stirrup is the stirrup-shaped small bone or ossicle in the middle ear which is attached to the incus laterally and to the fenestra ovalis, the 'oval window' medially. The oval window is adjacent to the vestibule of the inner ear. The stapes is the smallest and lightest bone in the human body. The stapes transmits the sound vibrations from the incus to the membrane of the inner ear inside the fenestra ovalis. The stapes is also stabilized by the stapedius muscle, which is innervated by the facial nerve. In non-mammalian vertebrates, the bone homologous to the stapes is usually called the columella; however, in reptiles, either term may be used. As the stapes first develops embryologically from the 6th to 8th wk of life, it surrounds the stapedial artery, which supplies the majority of the vasculature of the embryonic head. After that period, the external carotid artery is generated and takes over for the stapedial artery, which subsequently involutes, leaving the stapes with a windowframe-like structure. [WP,unvetted]." [Wikipedia:Stapes] comment: todo - editor note: AAO assignment to be checked. Split into separate homologous classes? subset: uberon_slim synonym: "columella" RELATED SENSU [Wikipedia:Stapes] synonym: "columella auris" RELATED [AAO:0000580] synonym: "columellare" RELATED [AAO:0000580] synonym: "interstapediale" RELATED [AAO:0000580] synonym: "mediostapediale" RELATED [AAO:0000580] synonym: "mesostapediale" RELATED [AAO:0000580] synonym: "os columellare" RELATED [AAO:0000580] synonym: "os intermedium" RELATED [AAO:0000580] synonym: "stapes" RELATED [AAO:0000580] synonym: "stelidium" RELATED [AAO:0000580] synonym: "stilus columellare" RELATED [AAO:0000580] synonym: "stirrup" EXACT [] xref: AAO:0000580 xref: EMAPA:18585 xref: FMA:52751 xref: GAID:868 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c1/Gray918.png/200px-Gray918.png xref: MA:0001217 xref: MESH:A.09.246.397.247.806 xref: ncithesaurus:Stapes xref: OpenCyc:Mx4rv5UnkZwpEbGdrcN5Y29ycA xref: SCTID:264199009 is_a: UBERON:0001686 ! auditory ossicle [Term] id: UBERON:0001688 name: incus alt_id: UBERON:FMA_52752-MA_0001215 def: "The incus or anvil is the anvil-shaped small bone or ossicle in the middle ear. It connects the malleus to the stapes. It was first described by Alessandro Achillin of Bologna. The incus transmits sound vibrations from the malleus to the stapes. The incus only exists in mammals, and is derived from a reptilian upper jaw bone, the quadrate bone. Embryologically it is derived from the first pharyngeal arch along with the rest of the bones of mastication, such as the maxilla and mandible. [WP,unvetted]." [Wikipedia:Incus] comment: TODO - check develops from and homology subset: uberon_slim synonym: "quadrate - incus" BROAD [OG:0000689] xref: EMAPA:18583 xref: FMA:52752 xref: GAID:866 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/df/Gray917.png/200px-Gray917.png xref: MA:0001215 xref: MESH:A.09.246.397.247.362 xref: ncithesaurus:Incus xref: OG:0000689 xref: SCTID:272649008 is_a: UBERON:0001686 ! auditory ossicle is_a: UBERON:0002513 ! endochondral bone relationship: develops_from UBERON:0004362 {source="Wikipedia"} ! mandibular arch relationship: develops_from UBERON:0007374 ! incus cartilage condensation [Term] id: UBERON:0001689 name: malleus alt_id: UBERON:FMA_52753-MA_0001216 def: "The malleus or hammer is a hammer-shaped small bone or ossicle of the middle ear which connects with the incus and is attached to the inner surface of the eardrum. The word is Latin for hammer. It transmits the sound vibrations from the eardrum to the incus. The malleus is unique to mammals, and evolved from a lower jaw bone in basal amniotes called the articular, which still forms part of the jaw joint in reptiles. Embryologically it is derived from the first pharyngeal arch along with the rest of the bones of mastication, such as the maxilla and mandible. [WP,unvetted]." [Wikipedia:Malleus] subset: uberon_slim xref: EMAPA:18584 xref: FMA:52753 xref: GAID:867 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6b/Gray916.png/200px-Gray916.png xref: MA:0001216 xref: MESH:A.09.246.397.247.524 xref: ncithesaurus:Malleus xref: SCTID:264090005 is_a: UBERON:0001686 ! auditory ossicle is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: develops_from UBERON:0003107 {source="Wikipedia"} ! Meckel's cartilage relationship: develops_from UBERON:0004362 {source="Wikipedia"} ! mandibular arch [Term] id: UBERON:0001690 name: ear alt_id: UBERON:FMA_52780-FMA_78500-MA_0000236-MIAA_0000138-XAO_0000189-ZFA_0001138 def: "Sense organ in vertebrates that is specialized for the detection of sound, and the maintenance of balance. Includes the outer ear and middle ear, which collect and transmit sound waves; and the inner ear, which contains the organs of balance and (except in fish) hearing. Also includes the pinna, the visible part of the outer ear, present in some mammals." [GO:0042471, Wikipedia:Ear] comment: This class was created automatically from a combination of ontologies subset: organ_slim subset: uberon_slim synonym: "auditory apparatus" RELATED [] synonym: "auris" RELATED [BTO:0000368] xref: AAO:0011014 xref: BTO:0000368 xref: EFO:0000826 xref: EHDAA:502 xref: EHDAA2:0000423 xref: EMAPA:16193 xref: EV:0100353 xref: FMA:52780 xref: GAID:62 xref: galen:Ear xref: MA:0000236 xref: MAT:0000138 xref: MESH:A.01.456.313 xref: MIAA:0000138 xref: ncithesaurus:Ear xref: NIF_GrossAnatomy:birnlex_1062 xref: OG:0000330 xref: OpenCyc:Mx4rvViXS5wpEbGdrcN5Y29ycA xref: OpenCyc:Mx4rvVjL05wpEbGdrcN5Y29ycA xref: SCTID:1910005 xref: XAO:0000189 is_a: UBERON:0000020 ! sense organ relationship: part_of UBERON:0000033 ! head relationship: part_of UBERON:0002105 ! vestibulo-auditory system [Term] id: UBERON:0001691 name: external ear alt_id: UBERON:FMA_52781-MA_0000258-MIAA_0000147-XAO_0000190 def: "Part of the ear external to the tympanum (eardrum). It consists of a tube (the external auditory meatus) that directs sound waves on to the tympanum, and may also include the external pinna, which extends beyond the skull[GO]." [GO:0042473, Wikipedia:External_ear] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "auricular region" BROAD [] synonym: "auricular region of head" EXACT [] synonym: "auris externa" RELATED [BTO:0002100] synonym: "outer ear" EXACT [] xref: AAO:0011037 xref: BTO:0002100 xref: EHDAA:3786 xref: EHDAA:5343 xref: EHDAA:5352 xref: EHDAA2:0000462 xref: EMAPA:16991 xref: EV:0100354 xref: FMA:52781 xref: GAID:104 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/Gray907.png/200px-Gray907.png xref: MA:0000258 xref: MAT:0000147 xref: MESH:A.09.246.272 xref: MIAA:0000147 xref: ncithesaurus:External_Ear xref: NIF_GrossAnatomy:birnlex_1705 xref: OG:0000311 xref: OpenCyc:Mx4rwOHtXJwpEbGdrcN5Y29ycA xref: SCTID:181176000 xref: XAO:0000190 is_a: UBERON:0001444 ! subdivision of head relationship: part_of UBERON:0001690 ! ear [Term] id: UBERON:0001692 name: basioccipital bone alt_id: UBERON:FMA_52858-MA_0001462-ZFA_0000472 def: "Large median unpaired cartilage bone that contacts the exocciptal, epiotic and pterotic dorsally, and the parasphenoid anteriorly. Forms the posteroventral hind margin of the cranium, articulates with the centrum of the first vertebra. Bears a posteroventral pharyngeal process that is flattened ventrally and opposes the pharyngeal teeth of the fifth pair of ceratobranchials[ZFA]." [Wikipedia:Basilar_part_of_occipital_bone, ZFIN:curator] comment: TODO - check FMA subset: uberon_slim subset: vertebrate_core synonym: "basilar part of occipital bone" EXACT [] synonym: "basioccipital" EXACT [] xref: AAO:0000039 xref: EMAPA:18705 xref: FMA:52858 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c4/Parsbasilaris%28young%29.PNG/200px-Parsbasilaris%28young%29.PNG xref: MA:0001462 xref: OG:0001152 xref: SCTID:138976007 xref: TAO:0000472 xref: ZFA:0000472 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0003465 ! implied link automatically realized ! chondrocranium bone relationship: develops_from UBERON:0006209 ! basioccipital cartilage condensation relationship: part_of UBERON:0001676 ! occipital bone relationship: part_of UBERON:0002241 ! chondrocranium relationship: part_of UBERON:0002517 ! basicranium [Term] id: UBERON:0001693 name: exoccipital bone alt_id: UBERON:FMA_52859-MA_0001464-ZFA_0000661 def: "Paired cartilage bone that bears a large foramen (lateral occipital foramen). Contacts the supraoccipital dorsally, the epiotic laterally and the basioccipital ventrally. Forms the posterior hind margin of the cranium and borders the lateral and posterior margins of the forum (foramen) magnum." [Wikipedia:Lateral_parts_of_occipital_bone, ZFIN:curator] comment: TODO - check FMA - currently we place this as both of a zone of bone organ and an (endochondral) bone. Removed endochondral bone classification for now, violates disjointness axiom subset: uberon_slim subset: vertebrate_core synonym: "exoccipital" EXACT [] synonym: "lateral part of occipital bone" EXACT [] xref: AAO:0000147 xref: EMAPA:18708 xref: FMA:52859 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bf/Gray131.png/200px-Gray131.png xref: MA:0001464 xref: OG:0001151 xref: SCTID:139279001 xref: TAO:0000661 xref: ZFA:0000661 is_a: UBERON:0000032 ! implied link automatically realized ! cranial structure is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0002241 ! chondrocranium [Term] id: UBERON:0001694 name: petrous part of temporal bone alt_id: UBERON:FMA_52871-MA_0001477 def: "The temporal bones are situated at the sides and base of the skull. The temporal bone supports that part of the face known as the temple. [WP,unvetted]." [Wikipedia:Petrous_bone] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "pars petrosa (os temporale)" EXACT [] synonym: "petromastoid part of temporal bone" EXACT [] synonym: "petrosal bone" EXACT [] synonym: "petrous bone" EXACT [] synonym: "temporal bone petrous part" EXACT [] xref: EHDAA2:0001452 xref: EMAPA:17683 xref: FMA:52871 xref: GAID:234 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/96/Gray137.png/200px-Gray137.png xref: MA:0001477 xref: MESH:A.02.835.232.781.885.681 xref: SCTID:361733004 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001678 ! temporal bone [Term] id: UBERON:0001695 name: squamous part of temporal bone alt_id: UBERON:FMA_52883-MA_0001473 def: "the thin, platelike part of the temporal bone." [MP:0004423] comment: This class was created automatically from a combination of ontologies synonym: "pars squamosa (os temporale)" EXACT [] synonym: "squamosal" EXACT [AAO:0000574] synonym: "squamosal bone" EXACT [] synonym: "squamous bone" EXACT [] xref: AAO:0000574 xref: EMAPA:18021 xref: FMA:52883 xref: MA:0001473 xref: SCTID:138672006 is_a: UBERON:0001474 ! bone [Term] id: UBERON:0001697 name: orbit alt_id: UBERON:FMA_53074-MA_0002482 def: "the orbital bone is the cavity or socket of the skull in which the eye and its appendages are situated." [Wikipedia:Orbit_(anatomy)] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "orbit of skull" EXACT [] xref: AAO:0000343 xref: BTO:0004687 xref: FMA:53074 xref: GAID:223 xref: galen:Orbit xref: MA:0002482 xref: MESH:A.02.835.232.781.324.690 xref: ncithesaurus:Orbit xref: OpenCyc:Mx4rvW8EgZwpEbGdrcN5Y29ycA xref: XAO:0003171 xref: ZFA:0001410 is_a: UBERON:0001474 ! bone is_a: UBERON:0004766 ! implied link automatically realized ! cranial bone relationship: encloses UBERON:0000019 ! camera-type eye relationship: part_of UBERON:0001456 ! face relationship: part_of UBERON:0003128 ! cranium [Term] id: UBERON:0001698 name: foramen ovale of skull alt_id: UBERON:FMA_53155-MA_0001873 def: "one of the larger of the several holes at the base of the skull that transmit nerves through the skull. The foramen ovale is situated in the anterior part of the sphenoid bone, posteriolateral to the foramen rotundum.." [Wikipedia:Foramen_ovale_(skull)] synonym: "foramen ovale" NARROW [AAO:0000169, FMA:53155] synonym: "foramen ovale (skull)" EXACT [FMA:53155] synonym: "foramen ovale basis cranii" EXACT [galen:ForamenOvaleBasisCranii] xref: AAO:0000169 xref: EHDAA:10627 xref: EHDAA2:0000551 xref: EMAPA:18711 xref: FMA:53155 xref: galen:ForamenOvaleBasisCranii xref: ncithesaurus:Oval_Foramen xref: OG:0001189 is_a: UBERON:0005744 ! cranial conduit disjoint_from: UBERON:0004754 ! foramen ovale of heart relationship: part_of UBERON:0003129 ! skull [Term] id: UBERON:0001699 name: sensory root of facial nerve alt_id: UBERON:FMA_53410-ZFA_0000679 def: "The nervus intermedius, or intermediate nerve, is the part of the facial nerve (cranial nerve VII) located between the motor component of the facial nerve and the vestibulocochlear nerve (cranial nerve VIII). It contains the sensory and parasympathetic fibers of the facial nerve. Upon reaching the facial canal, it joins with the motor root of the facial nerve at the geniculate ganglion. [WP,unvetted]." [Wikipedia:Intermediate_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "intermediate nerve" EXACT [] synonym: "nervus intermedius" EXACT [FMA:53410, FMA:TA] synonym: "Wrisberg's nerve" EXACT [] xref: FMA:53410 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6b/Gray788.png/200px-Gray788.png xref: SCTID:279927001 xref: TAO:0000679 xref: ZFA:0000679 is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0004674 ! facial nerve root relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0001700 name: geniculate ganglion alt_id: UBERON:FMA_53414-MA_0001076-ZFA_0001291 def: "The geniculate ganglion is an L-shaped collection of fibers and sensory neurons of the facial nerve located in the facial canal of the head. It receives fibers from the motor, sensory, and parasympathetic components of the facial nerve and sends fibers that will innervate the lacrimal glands, submandibular glands, sublingual glands, tongue, palate, pharynx, external auditory meatus, stapedius, posterior belly of the digastric muscle, stylohyoid muscle, and muscles of facial expression. Sensory and parasympathetic inputs are carried into the geniculate ganglion via the nervus intermedius. Motor fibers are carried via the facial nerve proper. The greater petrosal nerve, which carries sensory fibers as well as preganglionic parasympathetic fibers, emerges from the anterior aspect of the ganglion. The geniculate ganglion is one of several ganglia of the head and neck. Like the others, it is a bilaterally distributed structure, with each side of the face having a geniculate ganglion. [WP,unvetted]." [Wikipedia:Geniculate_ganglion] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "facial ganglion" EXACT [] synonym: "facial VII ganglion" EXACT [] synonym: "ganglion genicularum" EXACT [] synonym: "genicular ganglion" EXACT [] synonym: "gVII" RELATED [] xref: EFO:0003669 xref: EHDAA:5567 xref: EHDAA:6644 xref: EHDAA2:0000491 xref: EMAPA:16983 xref: EMAPA:17569 xref: FMA:53414 xref: GAID:718 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Gray789.png/200px-Gray789.png xref: MA:0001076 xref: MESH:A.08.340.390.380 xref: ncithesaurus:Geniculate_Ganglion xref: OG:0000707 xref: SCTID:279076005 xref: TAO:0001291 xref: ZFA:0001291 is_a: UBERON:0001714 ! ganglion of cranial nerve relationship: develops_from UBERON:0005565 {source="ZFA"} ! facio-acoustic neural crest [Term] id: UBERON:0001701 name: glossopharyngeal ganglion alt_id: UBERON:FMA_53471-ZFA_0001301 def: "the group of neuron cell bodies associated with the ninth cranial nerve." [MP:0001096] comment: This class was created automatically from a combination of ontologies subset: vertebrate_core synonym: "ganglion of glosspharyngeal nerve" EXACT [] synonym: "gIX" RELATED [] synonym: "glossopharyngeal IX ganglion" EXACT [MA:0001077] synonym: "petrosal ganglion" NARROW [ZFA:0001301] xref: EHDAA:2838 xref: EHDAA2:0000710 xref: EMAPA:16795 xref: FMA:53471 xref: MA:0001077 xref: OG:0000702 xref: SCTID:244451008 xref: TAO:0001301 xref: ZFA:0001301 is_a: UBERON:0001714 ! ganglion of cranial nerve relationship: develops_from UBERON:0005491 ! glossopharyngeal neural crest relationship: part_of UBERON:0000010 ! peripheral nervous system [Term] id: UBERON:0001702 name: eyelash alt_id: UBERON:FMA_53669-MA_0002702 def: "An eyelash or simply lash is one of the hairs that grow at the edge of the eyelid. Eyelashes protect the eye from debris and perform some of the same function as whiskers do on a cat or a mouse in the sense that they are sensitive to being touched, thus providing a warning that an object is near the eye (which is then closed reflexively). The greek word for eyelash is \"blepharis\". This word is often used as a root in biological terms" [Wikipedia:Eyelash] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:53669 xref: GAID:73 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/96/N2_Human_eye.jpg/200px-N2_Human_eye.jpg xref: MA:0002702 xref: MESH:A.01.456.505.420.504.421 xref: ncithesaurus:Eyelash xref: OpenCyc:Mx4rvVi41pwpEbGdrcN5Y29ycA xref: SCTID:244201001 is_a: UBERON:0001037 ! strand of hair relationship: part_of UBERON:0001711 ! eyelid [Term] id: UBERON:0001703 name: neurocranium alt_id: UBERON:FMA_53672-ZFA_0001580 def: "Portion of the skull which encloses the brain and special sense organs. The neurocranium arises from paraxial mesoderm in the head (first five somites and the unsegmented somitomeres rostral to the first somite) and from ectoderm via the neural crest. In Chondrichthyes and other cartilaginous vertebrates this portion of the cranium does not ossify; it is not replaced via endochondral ossification." [Grays:Grays, Wikipedia:Neuroranium, ZFA:0001580] comment: It includes the following bones: Ethmoid bone, Frontal bone, Occipital bone, Parietal bone, Sphenoid bone, Temporal bone. The term cranium can be ambiguous, in that it can refer to the neurocranium, or the neurocranium and the Facial skeleton[WP] It seems MA uses 'neurocranium' as a synonym for chondrocranium. Note there are currently some structures part of both viscero and neurocranium - ethmoid, zyogomatic, ... subset: uberon_slim subset: vertebrate_core synonym: "brain box" EXACT [] synonym: "brain case" RELATED [ZFA:0001580] synonym: "brain pan" RELATED [http://www.thefreedictionary.com/braincase] synonym: "braincase" RELATED [ZFA:0001580] xref: AAO:0010153 xref: EHDAA2:0000243 xref: FMA:53672 xref: MA:0000317 xref: SCTID:361731002 xref: TAO:0001580 xref: XAO:0003170 xref: ZFA:0001580 is_a: UBERON:0000032 ! implied link automatically realized ! cranial structure is_a: UBERON:0004765 ! skeletal element relationship: develops_from UBERON:0004761 ! cartilaginous neurocranium relationship: encloses UBERON:0000955 ! brain relationship: part_of UBERON:0003128 ! cranium [Term] id: UBERON:0001704 name: viscerocranium alt_id: UBERON:FMA_53673-MA_0000318 def: "The part of skull that is derived from branchial arches. The facial bones are the bones of the anterior and lower human skull. The splanchnocranium is derived from the neural crest cells (also responsible for the development of the neurocranium or, teeth and adrenal medulla)or from scleratone found in the somite block of the mesoderm. As with the neurocranium, in Chondricthyes and other cartilaginous vertebrates, they are not replaced via endochondral ossification. In tetrapods, such as amphibians and reptiles, the columella connecting to the tympanum is derived from the splanchnocranium. in mammals, the splanchnocranium derives the bones of the inner ear, the malleus, the incus and stapes[WP]. the part of the skull that comprises the facial bones[MP]." [MP:0005274, Wikipedia:Facial_skeleton] comment: Includes: * Inferior nasal concha * Lacrimal bone * Mandible * Maxilla * Nasal bone * Palatine bone * Vomer * Zygomatic bone. The hyoid is sometimes included, and sometimes excluded (FMA includes it)[WP] See also notes for ethmoid bone. subset: vertebrate_core synonym: "facial bone" RELATED [MA:0000318] synonym: "facial skeleton" EXACT [] synonym: "pharyngeal arch skeleton" RELATED [ZFA:0001216] synonym: "pharyngeal skeleton" RELATED [ZFA:0001216] synonym: "splanchnocranium" EXACT [OG:0000315, Wikipedia:Viscerocranium] xref: AAO:0010157 xref: EHDAA:8361 xref: EHDAA2:0002206 xref: EMAPA:18022 xref: FMA:53673 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/77/Illu_facial_bones.jpg/200px-Illu_facial_bones.jpg xref: MA:0000318 xref: OG:0000315 xref: XAO:0003176 xref: ZFA:0001216 is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0004765 ! skeletal element relationship: develops_from UBERON:0002539 ! pharyngeal arch relationship: develops_from UBERON:0003099 {source="Grays"} ! cranial neural crest relationship: part_of UBERON:0002090 ! postcranial axial skeleton relationship: part_of UBERON:0003129 ! skull [Term] id: UBERON:0001705 name: nail alt_id: UBERON:FMA_54326-MA_0002703-MIAA_0000158 def: "a horn-like keratin structure covering the dorsal aspect of the terminal phalanges of fingers and toes[WP]." [Wikipedia:Nail_(anatomy)] comment: TODO: check claw vs nail. A primate's nail consists of the unguis alone; the subunguis has disappeared. subset: uberon_slim synonym: "claw" RELATED [] synonym: "talon" RELATED [] xref: BTO:0001719 xref: EFO:0000956 xref: EMAPA:18734 xref: EMAPA:18735 xref: EMAPA:18736 xref: EMAPA:18737 xref: EMAPA:18738 xref: EMAPA:18739 xref: EMAPA:18740 xref: EMAPA:18741 xref: EMAPA:18742 xref: EMAPA:18743 xref: EV:0100159 xref: FMA:54326 xref: GAID:1320 xref: galen:Nail xref: MA:0002703 xref: MAT:0000158 xref: MESH:A.17.600 xref: MIAA:0000158 xref: ncithesaurus:Nail xref: OG:0001361 xref: OpenCyc:Mx4rvVjJv5wpEbGdrcN5Y29ycA xref: SCTID:72651009 xref: XAO:0003103 is_a: UBERON:0009564 ! distal limb integumentary appendage relationship: part_of UBERON:0001003 {source="FMA"} ! epidermis relationship: part_of UBERON:0002097 {source="FMA"} ! skin of body [Term] id: UBERON:0001706 name: nasal septum alt_id: UBERON:FMA_54375-MA_0000285 def: "The nasal septum separates the left and right airways in the nose, dividing the two nostrils. It is depressed by the Depressor septi nasi muscle. [WP,unvetted]." [Wikipedia:Nasal_septum] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: AAO:0010135 xref: EHDAA:6809 xref: EHDAA2:0001234 xref: EHDAA2:0004104 xref: EMAPA:17608 xref: FMA:54375 xref: GAID:115 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/65/Gray854.png/200px-Gray854.png xref: MA:0000285 xref: MESH:A.02.165.639 xref: ncithesaurus:Nasal_Septum xref: OG:0000017 xref: OpenCyc:Mx4rv7e-k5wpEbGdrcN5Y29ycA xref: SCTID:181197004 is_a: UBERON:0003037 ! septum is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: develops_from UBERON:0004068 ! medial nasal prominence relationship: part_of UBERON:0000004 ! olfactory apparatus [Term] id: UBERON:0001707 name: nasal cavity alt_id: UBERON:FMA_54378-MA_0000284-ZFA_0000130 def: "a large air filled space above and behind the nose in the middle of the face[WP]." [Wikipedia:Nasal_cavity] comment: the cavity includes and starts at the nares and reaches all the way through to the and includes the choanae, the posterior nasal apertures[HP] subset: uberon_slim subset: vertebrate_core synonym: "cavitas nasalis" RELATED [BTO:0002096] synonym: "cavitas nasi" RELATED [BTO:0002096] synonym: "cavity of nose" EXACT [] synonym: "nasal canal" EXACT [ZFA:0000130] synonym: "nasal fossa" EXACT [Wikipedia:Nasal_cavity] synonym: "nasal pit" RELATED [] synonym: "olfactory cavity" RELATED [] synonym: "olfactory pit" RELATED INCONSISTENT [ZFA:0000130] xref: AAO:0000314 xref: BTO:0002096 xref: EHDAA:6801 xref: EHDAA2:0001226 xref: EMAPA:17604 xref: FMA:54378 xref: GAID:350 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d4/Illu01_head_neck.jpg/200px-Illu01_head_neck.jpg xref: MA:0000284 xref: MESH:A.04.531.449 xref: ncithesaurus:Nasal_Cavity xref: OG:0000271 xref: SCTID:263481003 xref: TAO:0000130 xref: ZFA:0000130 is_a: UBERON:0002553 ! anatomical cavity relationship: develops_from UBERON:0005870 ! olfactory pit relationship: part_of UBERON:0000004 {source="MA"} ! olfactory apparatus relationship: part_of UBERON:0001557 {source="MA"} ! upper respiratory tract [Term] id: UBERON:0001708 name: jaw alt_id: UBERON:FMA_54396-MA_0001905-ZFA_0001227 def: "Bony structure of the mouth that holds the teeth. It consists of the MANDIBLE and the MAXILLA[MESH]. Skeletal and cartilagenous elements of the first pharyngeal arch[ZFA]." [Wikipedia:Jaw, ZFIN:curator] comment: TODO CHECK ZFA. Note that jaw is the superclass of upper/lower jaw in FMA, but in MA it is the combined structure. Check AAO. Development: There are cellular contributions from all three embryonic germ layers: pharyngeal mesoderm, endoderm and neural crest that migrates out of the ectoderm (Noden, 1983). subset: uberon_slim subset: vertebrate_core synonym: "jaw cartilage" EXACT [ZFA:0001227] synonym: "jaws" RELATED [] synonym: "mandibular arch" RELATED [] synonym: "mandibular arch skeleton" EXACT [ZFA:0001227] synonym: "oral jaw skeleton" RELATED [] synonym: "pharyngeal arch 1 skeleton" RELATED [] synonym: "visceral arch 1" RELATED [] xref: AAO:0000988 xref: BTO:0001749 xref: FMA:54396 xref: GAID:214 xref: galen:Jaw xref: MA:0001905 xref: MESH:A.02.835.232.781.324.502 xref: ncithesaurus:Jaw xref: OpenCyc:Mx4rvVjjEZwpEbGdrcN5Y29ycA xref: TAO:0001227 xref: ZFA:0001227 is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0004765 ! skeletal element relationship: part_of UBERON:0001704 ! viscerocranium [Term] id: UBERON:0001709 name: upper jaw alt_id: UBERON:FMA_54397-MA_0001908-XAO_0003087-ZFA_0001272 def: "The dorsal portion of the first pharyngeal arch, comprising the upper jaw." [Wikipedia:Upper_jaw, ZFIN:curator] comment: Note isa/partof difference MA/FMA subset: uberon_slim subset: vertebrate_core synonym: "dorsal mandibular arch" RELATED [] synonym: "dorsal visceral arch 1" EXACT [ZFA:0001272] synonym: "palatoquadrate arch" EXACT [] synonym: "upper pharyngeal jaw" EXACT [ZFA:0001272] synonym: "upper pharyngeal jaws" RELATED [] xref: AAO:0000620 xref: EFO:0003659 xref: EHDAA:8025 xref: EHDAA2:0002118 xref: EMAPA:17924 xref: FMA:54397 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a7/Gray189.png/200px-Gray189.png xref: MA:0001908 xref: ncithesaurus:Upper_Jaw xref: OG:0000454 xref: TAO:0001272 xref: XAO:0003087 xref: ZFA:0001272 is_a: UBERON:0001708 ! jaw relationship: part_of UBERON:0004089 ! midface [Term] id: UBERON:0001710 name: lower jaw alt_id: UBERON:FMA_54398-MA_0001906-XAO_0003084-ZFA_0001273 def: "The ventral portion of the first pharyngeal arch, comprising the lower jaw." [Wikipedia:Lower_jaw, ZFIN:curator] subset: uberon_slim subset: vertebrate_core synonym: "mandible" RELATED [] synonym: "mandibular series" RELATED [] synonym: "ventral mandibular arch" EXACT [] xref: AAO:0000272 xref: EFO:0003660 xref: EHDAA:7995 xref: EHDAA2:0001018 xref: EMAPA:17906 xref: EMAPA:18290 xref: FMA:54398 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray176.png/200px-Gray176.png xref: MA:0001906 xref: MESH:A.02.835.232.781.324.502.632 xref: ncithesaurus:Lower_Jaw xref: OG:0000453 xref: TAO:0001273 xref: XAO:0003084 xref: ZFA:0001273 is_a: UBERON:0001708 ! jaw [Term] id: UBERON:0001711 name: eyelid alt_id: UBERON:FMA_54437-MA_0000268 def: "An eyelid is a thin fold of skin that covers and protects an eye. With the exception of the prepuce and the labia minora, it has the thinnest skin of the whole body. The levator palpebrae superioris muscle retracts the eyelid to 'open' the eye. This can be either voluntarily or involuntarily. The human eyelid features a row of eyelashes which serve to heighten the protection of the eye from dust and foreign debris, as well as from perspiration. 'Palpebral' (and 'blepharo') means relating to the eyelids. Its key function is to regularly spread the tears and other secretion on the eye surface to keep it moist, since the cornea must be continuously moist. They keep the eyes from drying out when asleep. Moreover, the blink reflex protects the eye from foreign bodies. [WP,unvetted]." [Wikipedia:Eyelid] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "blepharon" EXACT [] synonym: "palpebra" RELATED [] xref: BTO:0002241 xref: EHDAA:9037 xref: EHDAA2:0000487 xref: EMAPA:17829 xref: EV:0100338 xref: FMA:54437 xref: GAID:72 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Eye_makeup.jpg/200px-Eye_makeup.jpg xref: MA:0000268 xref: MESH:A.01.456.505.420.504 xref: ncithesaurus:Eyelid xref: OG:0000016 xref: OpenCyc:Mx4rvVi4m5wpEbGdrcN5Y29ycA xref: SCTID:265782007 is_a: UBERON:0001444 ! subdivision of head relationship: adjacent_to UBERON:0000019 ! camera-type eye relationship: part_of UBERON:0004088 ! ocular region [Term] id: UBERON:0001712 name: upper eyelid alt_id: UBERON:FMA_54439-MA_0001267 comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "palpebra superior" EXACT [FMA:54439, FMA:TA] synonym: "superior eyelid" EXACT [] xref: EHDAA:9047 xref: EHDAA2:0002115 xref: EMAPA:17834 xref: FMA:54439 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Eye_makeup.jpg/200px-Eye_makeup.jpg xref: MA:0001267 xref: ncithesaurus:Upper_Eyelid xref: OG:0000389 xref: OpenCyc:Mx4rvg4ohJwpEbGdrcN5Y29ycA xref: SCTID:244499008 is_a: UBERON:0001711 ! eyelid [Term] id: UBERON:0001713 name: lower eyelid alt_id: UBERON:FMA_54442-MA_0001263-XAO_0000007 comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "inferior eyelid" EXACT [] synonym: "palpebra inferior" EXACT [FMA:54442, FMA:TA] xref: AAO:0010349 xref: EHDAA:9041 xref: EHDAA2:0001015 xref: EMAPA:17831 xref: FMA:54442 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Eye_makeup.jpg/200px-Eye_makeup.jpg xref: MA:0001263 xref: ncithesaurus:Lower_Eyelid xref: OG:0000388 xref: OpenCyc:Mx4rvW6GtJwpEbGdrcN5Y29ycA xref: SCTID:362528002 xref: XAO:0000007 is_a: UBERON:0001711 ! eyelid is_a: UBERON:0003102 ! surface structure [Term] id: UBERON:0001714 name: ganglion of cranial nerve alt_id: UBERON:FMA_54502-MA_0000213 def: "sensory ganglia of the cranial nerves." [Wikipedia:Cranial_nerve_ganglion] comment: Note the MA term is part of the CNS. This needs to be checked w.r.t relationship between ganglia and the PNS, as the PNS and CNS are spatially disjoint. also meaning of MA term is not clear (appears to be union of nerve and ganglion, but MA 'cranial nerve' is unconnected) subset: uberon_slim synonym: "cranial ganglion/nerve" EXACT [] synonym: "cranial nerve ganglion" EXACT [] synonym: "cranial neural ganglion" EXACT [] synonym: "cranial neural tree organ ganglion" EXACT [OBOL:automatic] synonym: "ganglion of cranial neural tree organ" EXACT [OBOL:automatic] xref: FMA:54502 xref: MA:0000213 xref: SCTID:244448001 is_a: UBERON:0000045 ! ganglion is_a: UBERON:0003338 ! implied link automatically realized ! ganglion of peripheral nervous system relationship: part_of UBERON:0001785 intersection_of: UBERON:0000045 ! ganglion intersection_of: part_of UBERON:0001785 ! cranial nerve [Term] id: UBERON:0001715 name: oculomotor nuclear complex alt_id: UBERON:FMA_54510-ZFA_0000553 def: "The fibers of the oculomotor nerve arise from a nucleus in the midbrain, which lies in the gray substance of the floor of the cerebral aqueduct and extends in front of the aqueduct for a short distance into the floor of the third ventricle. From this nucleus the fibers pass forward through the tegmentum, the red nucleus, and the medial part of the substantia nigra, forming a series of curves with a lateral convexity, and emerge from the oculomotor sulcus on the medial side of the cerebral peduncle. The nucleus of the oculomotor nerve does not consist of a continuous column of cells, but is broken up into a number of smaller nuclei, which are arranged in two groups, anterior and posterior. Those of the posterior group are six in number, five of which are symmetrical on the two sides of the middle line, while the sixth is centrally placed and is common to the nerves of both sides. The anterior group consists of two nuclei, an antero-medial and an antero-lateral . The nucleus of the oculomotor nerve, considered from a physiological standpoint, can be subdivided into several smaller groups of cells, each group controlling a particular muscle. A nearby nucleus, the Edinger-Westphal nucleus, is responsible for the autonomic functions of the oculomotor nerve, including pupillary constriction and lens accommodation. [WP,unvetted]." [Wikipedia:Nucleus_of_oculomotor_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "motor nucleus III" RELATED [] synonym: "nIII" RELATED [] synonym: "nucleus nervi oculomotorii" EXACT [FMA:54510, FMA:TA] synonym: "nucleus of oculomotor nerve" EXACT [] synonym: "nucleus of third cranial nerve" EXACT [] synonym: "oculomotor III nucleus" EXACT [MA:0001073] synonym: "oculomotor nucleus" EXACT [] synonym: "third cranial nerve nucleus" EXACT [] xref: ABA:III xref: BM:MB-III xref: EFO:0002468 xref: EV:0100250 xref: FMA:54510 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/da/Cn3nucleus.png/200px-Cn3nucleus.png xref: MA:0001073 xref: ncithesaurus:Oculomotor_Nucleus xref: NIF_GrossAnatomy:birnlex_1240 xref: OG:0001389 xref: SCTID:362457000 xref: TAO:0000553 xref: ZFA:0000553 is_a: UBERON:0000126 ! cranial nerve nucleus is_a: UBERON:0007414 ! implied link automatically realized ! nucleus of midbrain tegmentum relationship: part_of UBERON:0001943 ! midbrain tegmentum relationship: spatially_disjoint_from UBERON:0001944 {source="ABA"} ! pretectal region relationship: spatially_disjoint_from UBERON:0001947 {source="ABA"} ! red nucleus relationship: spatially_disjoint_from UBERON:0001966 {source="ABA"} ! substantia nigra pars reticulata relationship: spatially_disjoint_from UBERON:0002141 {source="ABA"} ! parvocellular oculomotor nucleus relationship: spatially_disjoint_from UBERON:0002438 {source="ABA"} ! ventral tegmental nucleus relationship: spatially_disjoint_from UBERON:0002691 {source="ABA"} ! ventral tegmental area relationship: spatially_disjoint_from UBERON:0002696 {source="ABA"} ! cuneiform nucleus relationship: spatially_disjoint_from UBERON:0002722 {source="ABA"} ! trochlear nucleus relationship: spatially_disjoint_from UBERON:0002995 {source="ABA"} ! substantia nigra pars lateralis relationship: spatially_disjoint_from UBERON:0003040 {source="ABA"} ! central gray substance of midbrain [Term] id: UBERON:0001716 name: secondary palate alt_id: UBERON:FMA_54549-FMA_55023-MA_0002476-MA_0002477-MIAA_0000161 def: "Partition that separates the nasal and oral cavities[GO]. The palate is divided into two parts, the anterior bony hard palate, and the posterior fleshy soft palate or velum. The maxillary nerve branch of the trigeminal nerve (V) supplies sensory innervation to the palate[WP]." [GO:0060021, Wikipedia:Palate, Wikipedia:Secondary_palate] comment: present in mammals and some reptiles. A similar structure is found in crocodilians, but, in most other tetrapods, the oral and nasal cavities are not truly separate. The secondary palate is formed by bilateral medial extensions of maxillary processes. The extensions (palatine processes) meet at the midline, merging dorsally with nasal septum and rostrally with primary palate. The secondary palate (hard palate) separates nasal and oral cavities. Caudal extension of the secondary palate into the pharynx, forms a soft palate which divides the rostral pharynx into dorsal (nasopharynx) and ventral (oropharynx) chamber. subset: uberon_slim synonym: "definitive palate" EXACT [EMAPA:18948] synonym: "oral roof" EXACT [] synonym: "palate" BROAD SENSU [EMAPA:18948, GO:0060021, MA:0002476] synonym: "roof of mouth" EXACT [] xref: BTO:0001779 xref: EMAPA:18948 xref: FMA:54549 xref: GAID:152 xref: galen:Palate xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d4/Illu01_head_neck.jpg/200px-Illu01_head_neck.jpg xref: MA:0002476 xref: MESH:A.14.521.658 xref: ncithesaurus:Palate is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0007375 ! palate relationship: adjacent_to UBERON:0000167 ! oral cavity relationship: adjacent_to UBERON:0001707 ! nasal cavity relationship: part_of UBERON:0000165 ! mouth relationship: part_of UBERON:0001709 ! upper jaw [Term] id: UBERON:0001717 name: spinal nucleus of trigeminal nerve alt_id: UBERON:FMA_54565-MA_0001053 def: "The spinal trigeminal nucleus is a nucleus in the medulla that receives information about deep/crude touch, pain, and temperature from the ipsilateral face. The facial, glossopharyngeal, and vagus nerves also convey pain information from their areas to the spinal trigeminal nucleus. [WP,unvetted]." [Wikipedia:Spinal_trigeminal_nucleus] subset: uberon_slim synonym: "spinal nucleus of cranial nerve v" EXACT [] synonym: "spinal trigeminal nucleus" EXACT [GO:0021741] synonym: "trigeminal nerve spinal tract nucleus" EXACT [] synonym: "trigeminal spinal nucleus" EXACT [] synonym: "trigeminal v spinal sensory nucleus" EXACT [] xref: BM:VSp xref: FMA:54565 xref: GAID:605 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray696.png/200px-Gray696.png xref: MA:0001053 xref: MESH:A.08.186.211.132.931.920 xref: ncithesaurus:Nucleus_of_the_Spinal_Tract_of_the_Trigeminal_Nerve xref: OG:0001357 xref: SCTID:369033006 is_a: UBERON:0004132 {source="MA"} ! trigeminal sensory nucleus is_a: UBERON:0007635 ! implied link automatically realized ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 {source="MA"} ! medulla oblongata [Term] id: UBERON:0001718 name: mesencephalic nucleus of trigeminal nerve alt_id: UBERON:FMA_54568-ZFA_0000312 def: "The mesencephalic nucleus is involved with proprioception of the face, that is, the feeling of position of the muscles. Unlike many nuclei within the CNS, the mesencephalic nucleus contains no chemical synapses but are electrically coupled. Instead, neurons of this nucleus are pseudounipolar cells receiving proprioceptive information from the jaw, and sending projections to the motor trigeminal nucleus to mediate monosynaptic jaw reflexes. It is also the only structure in the CNS to contain the cell bodies of a primary afferent, which are usually contained within ganglia. [WP,unvetted]." [Wikipedia:Mesencephalic_nucleus_of_trigeminal_nerve] comment: part of midbrain tegmentum in NIF and MA. the neurons of the mesencephalic trigeminal nucleus are the only centrally located primary sensory neurons in amniotes; all others are extramedullary[PMID:11747082] subset: uberon_slim subset: vertebrate_core synonym: "Me5" BROAD [NIF_GrossAnatomy:birnlex_1010] synonym: "mesencephalic nucleus" BROAD [Wikipedia:Mesencephalic_nucleus_of_trigeminal_nerve] synonym: "mesencephalic trigeminal nucleus" EXACT [GO:0021739] synonym: "mesencephalic trigeminal V nucleus" EXACT [] synonym: "nucleus of mesencephalic root of v" EXACT [] synonym: "trigeminal mesencephalic nucleus" EXACT [] synonym: "trigeminal nerve mesencepahlic nucleus" EXACT [] synonym: "trigeminal V mesencephalic nucleus" EXACT [MA:0001057] xref: BM:Pons-5ME xref: EV:0100252 xref: FMA:54568 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray696.png/200px-Gray696.png xref: MA:0001057 xref: NIF_GrossAnatomy:birnlex_1010 xref: OG:0001354 xref: SCTID:369032001 xref: TAO:0000312 xref: ZFA:0000312 is_a: UBERON:0004132 ! trigeminal sensory nucleus is_a: UBERON:0007414 ! implied link automatically realized ! nucleus of midbrain tegmentum relationship: part_of UBERON:0001891 {source="MA"} ! midbrain relationship: part_of UBERON:0001943 {source="NIF"} ! midbrain tegmentum [Term] id: UBERON:0001719 name: nucleus ambiguus alt_id: UBERON:FMA_54588-MA_0001050 def: "The nucleus ambiguus (literally 'ambiguous nucleus') is a region of histologically disparate cells located just dorsal to the inferior olivary nucleus in the lateral portion of the upper medulla. It receives upper motor neuron innervation directly via the corticobulbar tract This nucleus gives rise to the efferent motor fibers of the vagus nerve terminating in the laryngeal and pharyngeal muscles, as well as to the efferent motor fibers of the glossopharyngeal nerve (CN IX) terminating in the stylopharyngeus. [WP,unvetted]." [Wikipedia:Nucleus_ambiguus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "ambiguus nucleus" EXACT [] xref: ABA:AMB xref: BM:Me-AMB xref: EV:0100292 xref: FMA:54588 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/93/Gray695.png/200px-Gray695.png xref: MA:0001050 xref: ncithesaurus:Nucleus_Ambiguus xref: NIF_GrossAnatomy:birnlex_2650 xref: SCTID:280184006 is_a: UBERON:0000126 ! cranial nerve nucleus is_a: UBERON:0007635 ! implied link automatically realized ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 ! medulla oblongata relationship: spatially_disjoint_from UBERON:0002127 {source="ABA"} ! inferior olivary complex relationship: spatially_disjoint_from UBERON:0002154 {source="ABA"} ! lateral reticular nucleus relationship: spatially_disjoint_from UBERON:0002155 {source="ABA"} ! gigantocellular nucleus relationship: spatially_disjoint_from UBERON:0002559 {source="ABA"} ! medullary reticular formation relationship: spatially_disjoint_from UBERON:0002673 {source="ABA"} ! vestibular nuclear complex relationship: spatially_disjoint_from UBERON:0002870 {source="ABA"} ! dorsal motor nucleus of vagus nerve relationship: spatially_disjoint_from UBERON:0002871 {source="ABA"} ! hypoglossal nucleus relationship: spatially_disjoint_from UBERON:0002872 {source="ABA"} ! inferior salivatory nucleus relationship: spatially_disjoint_from UBERON:0002877 {source="ABA"} ! parasolitary nucleus [Term] id: UBERON:0001720 name: cochlear nucleus alt_id: UBERON:FMA_54603-ZFA_0001638 def: "The cochlear nuclei consist of: (a) the dorsal cochlear nucleus, corresponding to the tuberculum acusticum on the dorso-lateral surface of the inferior peduncle; and (b) the ventral or accessory cochlear nucleus, placed between the two divisions of the nerve, on the ventral aspect of the inferior peduncle. [WP,unvetted]." [Wikipedia:Cochlear_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "cochlear nucleus of acoustic nerve" EXACT [] synonym: "cochlear nucleus of eighth cranial nerve" EXACT [] synonym: "cochlear VIII nucleus" EXACT [MA:0001012] synonym: "nucleus of cochlear nerve" EXACT [] synonym: "statoacoustic (VIII) nucleus" EXACT [] synonym: "vestibulocochlear nucleus" RELATED [] xref: FMA:54603 xref: GAID:601 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Gray691.png/200px-Gray691.png xref: MA:0001012 xref: MESH:A.08.186.211.132.810.428.600.135 xref: ncithesaurus:Cochlear_Nucleus xref: SCTID:362463009 xref: ZFA:0001638 is_a: UBERON:0000126 ! cranial nerve nucleus is_a: UBERON:0006331 ! implied link automatically realized ! brainstem nucleus is_a: UBERON:0009662 ! implied link automatically realized ! hindbrain nucleus relationship: part_of UBERON:0000988 ! pons [Term] id: UBERON:0001721 name: inferior vestibular nucleus alt_id: UBERON:FMA_54608-MA_0001054 def: "The inferior vestibular nucleus is the vestibular nucleus which lies near the fourth ventricle. [WP,unvetted]." [Wikipedia:Inferior_vestibular_nucleus] subset: uberon_slim synonym: "descending vestibular nucleus" EXACT [FMA:54608] synonym: "spinal vestibular nucleus" EXACT [FMA:54608] xref: ABA:SPIV xref: BM:Me-VS-VSI xref: BTO:0004369 xref: EV:0100258 xref: FMA:54608 xref: MA:0001054 xref: ncithesaurus:Spinal_Vestibular_Nucleus xref: SCTID:280175006 is_a: UBERON:0007228 ! vestibular nucleus relationship: spatially_disjoint_from UBERON:0001722 {source="ABA"} ! medial vestibular nucleus relationship: spatially_disjoint_from UBERON:0007227 {source="ABA"} ! superior vestibular nucleus relationship: spatially_disjoint_from UBERON:0007230 {source="ABA"} ! lateral vestibular nucleus [Term] id: UBERON:0001722 name: medial vestibular nucleus alt_id: UBERON:FMA_54611-MA_0001048 def: "The medial vestibular nucleus is one of the vestibular nuclei. It is located in the medulla oblongata. Lateral vestibulo-spinal tract (lateral vestibular nucleus “Deiters”)- via ventrolateral medulla and spinal cord to ventral funiculus (lumbo-sacral segments). Ipsilaterally for posture Medial vestibulo-spinal tract (medial, lateral, inferior, vestibular nuclei), bilateral projection via descending medial longitudinal fasciculus to cervical segments. DESCENDING MLF. Bilaterally for head/neck/eye movements [WP,unvetted]." [Wikipedia:Medial_vestibular_nucleus] subset: uberon_slim synonym: "chief vestibular nucleus" EXACT [FMA:54611] synonym: "dorsal vestibular nucleus" EXACT [FMA:54611] synonym: "medial nucleus" RELATED [Wikipedia:Medial_vestibular_nucleus] synonym: "nucleus of schwalbe" EXACT [FMA:54611] synonym: "nucleus triangularis" EXACT [FMA:54611, FMA:TA] synonym: "principal vestibular nucleus" EXACT [FMA:54611] synonym: "schwalbe's nucleus" EXACT [FMA:54611] synonym: "triangular nucleus" EXACT [FMA:54611] xref: ABA:MV xref: BM:Me-VS-VSM xref: BTO:0004371 xref: FMA:54611 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/65/Gray700.png/200px-Gray700.png xref: MA:0001048 xref: ncithesaurus:Medial_Vestibular_Nucleus xref: SCTID:280174005 is_a: UBERON:0007228 ! vestibular nucleus relationship: spatially_disjoint_from UBERON:0001721 {source="ABA"} ! inferior vestibular nucleus relationship: spatially_disjoint_from UBERON:0007227 {source="ABA"} ! superior vestibular nucleus relationship: spatially_disjoint_from UBERON:0007230 {source="ABA"} ! lateral vestibular nucleus [Term] id: UBERON:0001723 name: tongue alt_id: UBERON:FMA_54640-MA_0000347-MIAA_0000040-XAO_0000446 def: "The tongue is the movable, muscular organ on the floor of the mouth of most vertebrates, in many other mammals is the principal organ of taste, aids in the prehension of food, in swallowing, and in modifying the voice as in speech[GO]." [GO:0043586, Wikipedia:Tongue] comment: editor notes - in MA the tongue is part of the oral region, which in uberon is treated as the oral opening. consider revising oral opening - oral region equivalence subset: organ_slim subset: uberon_slim subset: vertebrate_core xref: AAO:0010360 xref: BTO:0001385 xref: EFO:0000833 xref: EHDAA:9144 xref: EHDAA2:0002062 xref: EMAPA:17185 xref: EMAPA:18870 xref: EV:0100058 xref: FMA:54640 xref: GAID:816 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a6/Tongue.agr.jpg/200px-Tongue.agr.jpg xref: MA:0000347 xref: MAT:0000040 xref: MESH:A.14.549.885 xref: MIAA:0000040 xref: ncithesaurus:Tongue xref: OG:0000419 xref: OpenCyc:Mx4rvVjmJ5wpEbGdrcN5Y29ycA_53KXLq9EdqAAAACs6hnmQ xref: SCTID:181226008 xref: XAO:0000446 xref: ZFA:0005333 is_a: UBERON:0000020 {source="GO"} ! sense organ is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: adjacent_to UBERON:0000166 ! oral opening relationship: develops_from UBERON:0002539 ! pharyngeal arch relationship: develops_from UBERON:0006756 {source="Wikipedia"} ! tuberculum impar relationship: develops_from UBERON:0006757 {source="Wikipedia"} ! lateral lingual swelling relationship: part_of UBERON:0000165 {source="BTO", source="FMA"} ! mouth relationship: part_of UBERON:0001033 ! gustatory system [Term] id: UBERON:0001724 name: sphenoidal sinus alt_id: UBERON:FMA_54683-MA_0001795 def: "One of the paired paranasal sinuses, located in the body of the sphenoid bone and communicating with the highest meatus of the nasal cavity on the same side[MESH]. The sphenoidal sinuses (or sphenoid) contained within the body of the sphenoid vary in size and shape; owing to the lateral displacement of the intervening septum they are rarely symmetrical. The following are their average measurements: vertical height, 2.2 cm. ; transverse breadth, 2 cm. ; antero-posterior depth, 2.2 cm. [WP,unvetted]." [MESH:A.04.531.621.827, Wikipedia:Sphenoidal_sinus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "sphenoid sinus" EXACT [] xref: FMA:54683 xref: GAID:359 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e3/Gray856.png/200px-Gray856.png xref: MA:0001795 xref: MESH:A.04.531.621.827 xref: ncithesaurus:Sphenoid_Sinus xref: OpenCyc:Mx4rwEIoz5wpEbGdrcN5Y29ycA xref: SCTID:181207000 is_a: UBERON:0001825 {source="MA"} ! paranasal sinus [Term] id: UBERON:0001725 name: cranial synchondrosis alt_id: UBERON:FMA_54816-MA_0001502 def: "the cartilaginous joints of the skull; these include sphenoethmoidal synchondrosis, sphenooccipital synchondrosis, sphenopetrosal synchondrosis, petrooccipital synchondrosis, anterior intraoccipital synchondrosis and posterior intraoccipital synchondrosis." [http://www.medilexicon.com/medicaldictionary.php?t=87514] xref: FMA:54816 xref: MA:0001502 xref: SCTID:314228003 is_a: UBERON:0002215 {source="FMA"} ! synchondrosis is_a: UBERON:0003685 ! implied link automatically realized ! cranial suture relationship: part_of UBERON:0003128 intersection_of: UBERON:0002215 ! synchondrosis intersection_of: part_of UBERON:0003128 ! cranium [Term] id: UBERON:0001726 name: papilla of tongue alt_id: UBERON:FMA_54819-MA_0001593 synonym: "lingual papilla" EXACT [] synonym: "tongue papilla" EXACT [] xref: FMA:54819 xref: MA:0001593 xref: ncithesaurus:Papilla_of_the_Tongue xref: NIF_GrossAnatomy:birnlex_4102 xref: SCTID:368728006 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001723 ! tongue relationship: part_of UBERON:0009471 {source="FMA-modified"} ! dorsum of tongue [Term] id: UBERON:0001727 name: taste bud alt_id: UBERON:FMA_54825-MA_0001591-XAO_0000445-ZFA_0001074 def: "Taste buds are small structures on the upper surface of the tongue, soft palate, upper esophagus and epiglottis that provide information about the taste of food being eaten. These structures are involved in detecting the five elements of taste perception: salty, sour, bitter, sweet, and umami (or savory). Via small openings in the tongue epithelium, called taste pores, parts of the food dissolved in saliva come into contact with the taste receptors. These are located on top of the taste receptor cells that constitute the taste buds. The taste receptor cells send information detected by clusters of various receptors and ion channels to the gustatory areas of the brain via the seventh, ninth and tenth cranial nerves. The human tongue has about 10,000 taste buds. [WP,unvetted]." [Wikipedia:Taste_bud] comment: todo - account for non-tongue taste buds subset: uberon_slim subset: vertebrate_core synonym: "caliculus gustatorius" RELATED PLURAL [Wikipedia:Taste_bud] synonym: "taste buds" RELATED PLURAL [Wikipedia:Taste_bud] synonym: "taste-bud" RELATED [Wikipedia:Taste_bud] synonym: "tastebud" EXACT [Wikipedia:Taste_bud] synonym: "tastebuds" RELATED PLURAL [Wikipedia:Taste_bud] xref: AAO:0010573 xref: BTO:0000989 xref: FMA:54825 xref: GAID:815 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5a/Gray1018.png/200px-Gray1018.png xref: MA:0001591 xref: MESH:A.08.800.550.700.120.800 xref: NIF_GrossAnatomy:birnlex_4101 xref: OG:0000130 xref: OpenCyc:Mx4rvVjan5wpEbGdrcN5Y29ycA xref: SCTID:362099006 xref: TAO:0001074 xref: XAO:0000445 xref: ZFA:0001074 is_a: UBERON:0000481 {source="ZFA"} ! multi-tissue structure is_a: UBERON:0004906 ! implied link automatically realized ! ectodermal gut relationship: develops_from UBERON:0007690 {source="http://dev.biologists.org/content/128/22/4573.full"} ! early pharyngeal endoderm relationship: part_of UBERON:0001033 {source="ZFA"} ! gustatory system relationship: part_of UBERON:0001726 {source="Wikipedia"} ! papilla of tongue relationship: part_of UBERON:0002926 {source="NIF"} ! gustatory epithelium [Term] id: UBERON:0001728 name: nasopharynx alt_id: UBERON:FMA_54878-MA_0000443 def: "uppermost part of the pharynx. It extends from the base of the skull to the upper surface of the soft palate;[1] it differs from the oral and laryngeal parts of the pharynx in that its cavity always remains patent (open)[WP]. In front it communicates through the choanae with the nasal cavities. On its lateral wall is the pharyngeal ostium of the auditory tube, somewhat triangular in shape, and bounded behind by a firm prominence, the torus tubarius or cushion, caused by the medial end of the cartilage of the tube which elevates the mucous membrane." [Wikipedia:Nasopharynx] subset: uberon_slim synonym: "nasal part of pharynx" EXACT [] synonym: "Nasenrachenraum" RELATED [BTO:0000662] synonym: "rhinopharynx" EXACT [] xref: BTO:0000662 xref: EHDAA:7086 xref: EHDAA2:0001239 xref: EMAPA:17670 xref: EMAPA:25092 xref: EV:0100066 xref: FMA:54878 xref: GAID:339 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4a/Illu_pharynx.jpg/200px-Illu_pharynx.jpg xref: MA:0000443 xref: MAT:0000447 xref: MESH:A.03.867.557 xref: ncithesaurus:Nasopharynx xref: OG:0000375 xref: OpenCyc:Mx4rwUPoDJwpEbGdrcN5Y29ycA xref: SCTID:181200003 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001042 ! chordate pharynx relationship: part_of UBERON:0001557 ! upper respiratory tract [Term] id: UBERON:0001729 name: oropharynx alt_id: UBERON:FMA_54879-MA_0000351 def: "The Oropharynx (oral part of the pharynx) reaches from the Uvula to the level of the hyoid bone. It opens anteriorly, through the isthmus faucium, into the mouth, while in its lateral wall, between the two palatine arches, is the palatine tonsil. [WP,unvetted]." [Wikipedia:Oropharynx] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "oral part of pharynx" EXACT [] xref: EFO:0001976 xref: EHDAA2:0004082 xref: EMAPA:25094 xref: EV:0100067 xref: FMA:54879 xref: GAID:340 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4a/Illu_pharynx.jpg/200px-Illu_pharynx.jpg xref: MA:0000351 xref: MAT:0000446 xref: MESH:A.03.867.603 xref: ncithesaurus:Oropharynx xref: OG:0000457 xref: OpenCyc:Mx4rwACoxpwpEbGdrcN5Y29ycA xref: SCTID:263376008 xref: VAO:0000034 xref: XAO:0004048 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001007 ! digestive system relationship: part_of UBERON:0001042 ! chordate pharynx relationship: part_of UBERON:0005409 ! gastrointestinal system [Term] id: UBERON:0001730 name: extrinsic ligament of larynx alt_id: UBERON:FMA_54921-MA_0001756 synonym: "laryngeal extrinsic ligament" EXACT [] xref: FMA:54921 xref: MA:0001756 xref: SCTID:279550004 is_a: UBERON:0001743 ! ligament of larynx [Term] id: UBERON:0001731 name: cavity of pharynx alt_id: UBERON:FMA_54935-XAO_0000105 comment: This class was created automatically from a combination of ontologies synonym: "cavitas pharyngis" RELATED [BTO:0002097] synonym: "lumen of pharynx" EXACT [] synonym: "pharyngeal cavity" EXACT [] xref: AAO:0010435 xref: BTO:0002097 xref: EMAPA:18381 xref: EMAPA:18869 xref: FMA:54935 xref: SCTID:180543003 xref: XAO:0000105 is_a: UBERON:0002553 ! anatomical cavity relationship: develops_from UBERON:0001041 ! foregut relationship: part_of UBERON:0006562 ! pharynx [Term] id: UBERON:0001732 name: pharyngeal tonsil alt_id: UBERON:FMA_54970-MA_0000774 def: "Adenoids (or pharyngeal tonsils, or nasopharyngeal tonsils) are a mass of lymphoid tissue situated at the very back of the nose, in the roof of the nasopharynx, where the nose blends into the mouth. Normally, in children, they make a soft mound in the roof and posterior wall of the nasopharynx, just above and behind the uvula. [WP,unvetted]." [Wikipedia:Pharyngeal_tonsil] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "adenoid" EXACT [] synonym: "nasopharyngeal tonsil" EXACT [] synonym: "Rachenmandel" RELATED [BTO:0000777] synonym: "tonsil of luschka" EXACT [] xref: BTO:0000777 xref: EFO:0001401 xref: EV:0100054 xref: FMA:54970 xref: GAID:1288 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/be/Gray994-adenoid.png/200px-Gray994-adenoid.png xref: MA:0000774 xref: MESH:A.15.382.520.604.084 xref: ncithesaurus:Pharyngeal_Tonsil xref: SCTID:181199001 is_a: UBERON:0002372 ! tonsil relationship: part_of UBERON:0001728 ! nasopharynx [Term] id: UBERON:0001733 name: soft palate alt_id: UBERON:FMA_55021-MA_0002412-MIAA_0000039 def: "soft tissue constituting the back of the roof of the mouth. The soft palate is distinguished from the hard palate at the front of the mouth in that it does not contain bone[WP]. The soft palate is the posterior portion of the palate extending from the posterior edge of the hard palate[GO]." [GO:0060023, Wikipedia:Soft_palate] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "muscular palate" RELATED [Wikipedia:Soft_palate] synonym: "velum" RELATED [Wikipedia:Soft_palate] xref: EMAPA:18949 xref: FMA:55021 xref: GAID:1284 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Tonsils_diagram.jpg/200px-Tonsils_diagram.jpg xref: MA:0002412 xref: MAT:0000039 xref: MESH:A.14.549.617.780 xref: MIAA:0000039 xref: ncithesaurus:Soft_Palate xref: SCTID:245784004 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0000477 {source="FMA"} ! anatomical cluster relationship: part_of UBERON:0000166 ! oral opening relationship: part_of UBERON:0001716 ! secondary palate [Term] id: UBERON:0001734 name: uvula alt_id: UBERON:FMA_55022-MA_0001006 def: "Conic projection from the posterior edge of the middle of the soft palate, composed of connective tissue containing a number of racemose glands, and some muscular fibers. The uvula, hanging from the end of the soft palate, is responsible for the sound of snoring. Touching the uvula or the end of the soft palate evokes a strong gag reflex in most people." [Wikipedia:Palatine_uvula] subset: uberon_slim synonym: "palatine uvula" EXACT [] synonym: "uvula of palate" EXACT [] synonym: "uvula palatina" EXACT [FMA:55022, FMA:TA] xref: EFO:0001386 xref: FMA:55022 xref: GAID:1285 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Tonsils_diagram.jpg/200px-Tonsils_diagram.jpg xref: MESH:A.14.549.617.780.729 xref: ncithesaurus:Uvula xref: SCTID:362082005 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001733 ! soft palate [Term] id: UBERON:0001735 name: tonsillar ring alt_id: UBERON:FMA_55070-MA_0000752 def: "lymphoid tissue ring located in the pharynx and to the back of the oral cavity. The ring consists of (from superior to inferior): Pharyngeal tonsil (also known as 'adenoids' when infected) Tubal tonsil (where Eustachian tube opens in the nasopharynx) Palatine tonsils (commonly called 'the tonsils' in the vernacular, less commonly termed 'faucial tonsils') Lingual tonsils Some animals, but not humans, have one or two additional tonsils: Soft palate tonsil Paraepiglottic tonsil[WP]." [Wikipedia:Waldeyer's_ring] comment: see also FMA:79771 naso-pharyngeal lymphoid tissue subset: uberon_slim synonym: "anulus lymphoideus pharyngis" EXACT [FMA:55070, FMA:TA] synonym: "oropharyngeal lymphoid tissue" EXACT [] synonym: "pharyngeal lymphatic ring" EXACT [] synonym: "pharyngeal lymphoid ring" EXACT [] synonym: "Waldeyer's ring" EXACT [] synonym: "Waldeyer's tonsillar ring" EXACT [] xref: FMA:55070 xref: MA:0000752 xref: ncithesaurus:Waldeyers_Tonsillar_Ring xref: SCTID:56411004 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001961 {source="MA"} ! mucosa-associated lymphoid tissue relationship: part_of UBERON:0001042 ! chordate pharynx [Term] id: UBERON:0001736 name: submandibular gland alt_id: UBERON:FMA_55093-MA_0001589 def: "The paired submandibular glands (submaxillary glands) are salivary glands located beneath the floor of the mouth. In humans, they account for 70% of the salivary volume and weigh about 15 grams. [WP,unvetted]." [Wikipedia:Submandibular_gland] comment: TODO check SSG vs SG subset: uberon_slim synonym: "submandibular salivary gland" RELATED [] synonym: "submaxillary gland" RELATED [] xref: BTO:0001316 xref: EFO:0001387 xref: EMAPA:18812 xref: EV:0100061 xref: FMA:55093 xref: GAID:942 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/51/Illu_quiz_hn_02.jpg/200px-Illu_quiz_hn_02.jpg xref: MA:0001589 xref: MESH:A.10.336.779.812 xref: ncithesaurus:Submandibular_Gland xref: OG:0000364 xref: SCTID:181235001 is_a: UBERON:0001829 ! major salivary gland relationship: develops_from UBERON:0006298 ! submandibular gland primordium [Term] id: UBERON:0001737 name: larynx alt_id: UBERON:FMA_55097-MA_0000414-MIAA_0000187-XAO_0003081 def: "Heterogeneous cluster that connects the pharynx to the tracheobronchial tree[FMA]." [FMA:55097, Wikipedia:Larynx] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: AAO:0000268 xref: BTO:0001208 xref: EFO:0000838 xref: EHDAA2:0004063 xref: EMAPA:18333 xref: EV:0100039 xref: FMA:55097 xref: GAID:108 xref: galen:Larynx xref: MA:0000414 xref: MAT:0000187 xref: MESH:A.04.329 xref: MIAA:0000187 xref: ncithesaurus:Larynx xref: OG:0001279 xref: OpenCyc:Mx4rvViOnZwpEbGdrcN5Y29ycA xref: SCTID:181212004 xref: XAO:0003081 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000477 ! anatomical cluster relationship: develops_from UBERON:0008947 {source="EHDAA2"} ! respiratory primordium relationship: part_of UBERON:0001557 ! upper respiratory tract [Term] id: UBERON:0001738 name: thyroid cartilage alt_id: UBERON:FMA_55099-MA_0001764 def: "The thyroid cartilage is the largest of the nine cartilages that make up the laryngeal skeleton, the cartilage structure in and around the trachea that contains the larynx. It is composed of two plate-like laminae that fuse on the anterior side of the cartilage to form a peak, called the laryngeal prominence. This prominence is often referred to as the 'pomus Adamus' or 'Adam's apple'. The laryngeal prominence is more prominent in adult male than female because of the difference in the size of the angle: 90° in male and 120° in female. The lip of the thyroid cartilage just superior to the laryngeal prominence is called the superior thyroid notch, while the notch inferior to the thyroid angle is called the inferior thyroid notch. Its posterior border is elongated both inferiorly and superiorly to form the superior horn of thyroid cartilage and inferior horn of thyroid cartilage. [WP,unvetted]." [Wikipedia:Thyroid_cartilage] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: BTO:0003655 xref: EHDAA:9395 xref: EHDAA2:0002030 xref: EMAPA:18698 xref: FMA:55099 xref: GAID:112 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8a/Larynx_external_en.svg/200px-Larynx_external_en.svg.png xref: MA:0001764 xref: MESH:A.02.165.507.870 xref: ncithesaurus:Thyroid_Cartilage xref: OG:0001365 xref: SCTID:263483000 is_a: UBERON:0001739 ! laryngeal cartilage relationship: develops_from UBERON:0002539 {source="Wikipedia"} ! pharyngeal arch [Term] id: UBERON:0001739 name: laryngeal cartilage alt_id: UBERON:FMA_55108-MA_0001758 def: "the cartilaginous structures that support the larynx." [MP:0002256] comment: This class was created automatically from a combination of ontologies synonym: "cartilage of larynx" EXACT [] synonym: "larynx cartilage" EXACT [] xref: BTO:0003660 xref: EHDAA:8157 xref: EMAPA:18697 xref: FMA:55108 xref: GAID:107 xref: MA:0001758 xref: MESH:A.02.165.507 xref: ncithesaurus:Laryngeal_Cartilage xref: SCTID:263482005 is_a: UBERON:0002236 ! costal cartilage is_a: UBERON:0003406 ! implied link automatically realized ! cartilage of respiratory system is_a: UBERON:0003583 ! implied link automatically realized ! larynx connective tissue is_a: UBERON:0005174 ! implied link automatically realized ! back organ is_a: UBERON:0005175 ! implied link automatically realized ! chest organ is_a: UBERON:0007844 {source="FMA"} ! cartilaginous element relationship: part_of UBERON:0001737 intersection_of: UBERON:0007844 ! cartilaginous element intersection_of: part_of UBERON:0001737 ! larynx relationship: part_of UBERON:0001737 {source="BTO"} ! larynx [Term] id: UBERON:0001740 name: arytenoid cartilage alt_id: UBERON:FMA_55109-MA_0001759 def: "The arytenoid cartilages are a pair of small three-sided pyramids which form part of the larynx, to which the vocal cords are attached. Each is pyramidal in form, and has three surfaces, a base, and an apex. [WP,unvetted]." [Wikipedia:Arytenoid_cartilage] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: AAO:0000674 xref: EMAPA:18695 xref: FMA:55109 xref: GAID:109 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fa/Gray950.png/200px-Gray950.png xref: MA:0001759 xref: MESH:A.02.165.507.083 xref: ncithesaurus:Arytenoid_Cartilage xref: SCTID:264446005 is_a: UBERON:0001739 ! laryngeal cartilage relationship: develops_from UBERON:0002539 {source="Wikipedia"} ! pharyngeal arch [Term] id: UBERON:0001741 name: corniculate cartilage alt_id: UBERON:FMA_55110-MA_0001885 def: "The corniculate cartilages (cartilages of Santorini) are two small conical nodules consisting of yellow elastic cartilage, which articulate with the summits of the arytenoid cartilages and serve to prolong them posteriorly and medially. They are situated in the posterior parts of the aryepiglottic folds of mucous membrane, and are sometimes fused with the arytenoid cartilages. [WP,unvetted]." [Wikipedia:Corniculate_cartilage] subset: uberon_slim synonym: "cartilage of Santorini" EXACT [] synonym: "Santorini's cartilage" EXACT [] xref: FMA:55110 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/56/Gray952.png/200px-Gray952.png xref: MA:0001885 xref: ncithesaurus:Corniculate_Cartilage xref: SCTID:278989005 is_a: UBERON:0001996 {source="MA"} ! elastic cartilage is_a: UBERON:0003406 ! implied link automatically realized ! cartilage of respiratory system is_a: UBERON:0003583 ! implied link automatically realized ! larynx connective tissue relationship: part_of UBERON:0001737 {source="FMA"} ! larynx [Term] id: UBERON:0001742 name: epiglottic cartilage alt_id: UBERON:FMA_55112-MA_0001763 def: "the most superior of the laryngeal cartilages, which is found at the root of the tongue and folds back over the entrance to the larynx during swallowing." [MP:0002259] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:55112 xref: MA:0001763 xref: ncithesaurus:Epiglottic_Cartilage xref: SCTID:278990001 is_a: UBERON:0001996 ! elastic cartilage is_a: UBERON:0003406 ! implied link automatically realized ! cartilage of respiratory system is_a: UBERON:0003583 ! implied link automatically realized ! larynx connective tissue relationship: part_of UBERON:0000388 ! epiglottis relationship: part_of UBERON:0001737 ! larynx [Term] id: UBERON:0001743 name: ligament of larynx alt_id: UBERON:FMA_55131-MA_0001755 def: "A ligament that is part of a larynx [Obol]. " [OBOL:automatic] synonym: "laryngeal ligament" EXACT [] synonym: "larynx ligament" EXACT [] xref: FMA:55131 xref: MA:0001755 xref: ncithesaurus:Laryngeal_Ligament xref: SCTID:279508004 is_a: UBERON:0003583 ! implied link automatically realized ! larynx connective tissue is_a: UBERON:0008845 {source="FMA"} ! nonskeletal ligament relationship: part_of UBERON:0001737 intersection_of: UBERON:0000211 ! ligament intersection_of: part_of UBERON:0001737 ! larynx [Term] id: UBERON:0001744 name: lymphoid tissue alt_id: UBERON:FMA_55220-MA_0002436 def: "Portion of connective tissue with various types of white blood cells enmeshed in it, most numerous being the lymphocytes[WP]." [Wikipedia:Lymphoid_tissue] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "lymphatic tissue" EXACT [] synonym: "lymphocytic tissue" EXACT [] xref: BTO:0000753 xref: FMA:55220 xref: GAID:342 xref: galen:LymphoidTissue xref: MA:0002436 xref: MESH:A.10.549 xref: ncithesaurus:Lymphoid_Tissue xref: SCTID:181768009 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0002193 ! hemolymphoid system relationship: part_of UBERON:0002465 ! lymphoid system [Term] id: UBERON:0001745 name: secondary nodular lymphoid tissue alt_id: UBERON:FMA_55224-MA_0000744 def: "sites within lymph nodes in peripheral lymph tissues where intense mature B lymphocytes, otherwise known as Centrocytes rapidly proliferate, differentiate, mutate through somatic hypermutation and class switch during antibody responses. Germinal centers are an important part of the B-cell humoral immune response. They develop dynamically after the activation of B-cells by T-dependent antigen. Histologically, the GCs describe microscopically distinguishable parts in lymphoid tissues[WP]. A germinal center is a specialized microenvironment formed when activated B cells enter lymphoid follicles. Germinal centers are the foci for B cell proliferation and somatic hypermutation[GO]." [GO:0002467, Wikipedia:Germinal_center] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "germinal center" EXACT [] synonym: "lymph node germinal center" RELATED [] synonym: "lymph node secondary follicle" EXACT [] synonym: "peripheral lymphoid tissue" EXACT [] synonym: "secondary lymphoid nodule" EXACT [] synonym: "secondary lymphoid tissue" EXACT [] xref: BTO:0003671 xref: EV:0100051 xref: FMA:55224 xref: GAID:946 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2f/Keimzentrum.jpg/200px-Keimzentrum.jpg xref: MA:0000744 xref: MESH:A.10.549.250 xref: ncithesaurus:Germinal_Center is_a: UBERON:0000444 ! lymphoid follicle relationship: part_of UBERON:0000029 ! lymph node [Term] id: UBERON:0001746 name: fibrous capsule of thyroid gland alt_id: UBERON:FMA_55513-MA_0002675 comment: This class was created automatically from a combination of ontologies synonym: "thyroid capsule" EXACT [] synonym: "thyroid gland capsule" EXACT [] xref: FMA:55513 xref: MA:0002675 xref: ncithesaurus:Thyroid_Gland_Capsule xref: SCTID:176859009 is_a: UBERON:0003893 ! capsule is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: part_of UBERON:0002046 ! thyroid gland [Term] id: UBERON:0001747 name: parenchyma of thyroid gland alt_id: UBERON:FMA_55515-MA_0000730 def: "A parenchyma that is part of a thyroid follicle [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "parenchyma of thyroid" EXACT [OBOL:automatic] synonym: "parenchyma of thyroid follicle" EXACT [OBOL:automatic] synonym: "parenchyma of thyroid gland follicle" EXACT [OBOL:automatic] synonym: "thyroid follicle parenchyma" EXACT [OBOL:automatic] synonym: "thyroid gland follicle parenchyma" EXACT [OBOL:automatic] synonym: "thyroid gland parenchyma" EXACT [] synonym: "thyroid parenchyma" EXACT [OBOL:automatic] xref: BTO:0004579 xref: FMA:55515 xref: MA:0000730 xref: SCTID:371402001 is_a: UBERON:0000064 ! organ part is_a: UBERON:0000353 ! implied link automatically realized ! parenchyma is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: part_of UBERON:0002046 intersection_of: UBERON:0000353 ! parenchyma intersection_of: part_of UBERON:0002046 ! thyroid gland relationship: part_of UBERON:0002046 ! thyroid gland [Term] id: UBERON:0001748 name: capsule of parathyroid gland alt_id: UBERON:FMA_55566-MA_0002676 comment: This class was created automatically from a combination of ontologies synonym: "parathyroid gland capsule" EXACT [] xref: FMA:55566 xref: MA:0002676 xref: ncithesaurus:Parathyroid_Gland_Capsule is_a: UBERON:0003893 ! capsule relationship: surrounds UBERON:0001132 intersection_of: UBERON:0003893 ! capsule intersection_of: surrounds UBERON:0001132 ! parathyroid gland relationship: surrounds UBERON:0001132 ! parathyroid gland [Term] id: UBERON:0001749 name: parenchyma of parathyroid gland alt_id: UBERON:FMA_55569-MA_0002677 def: "A parenchyma that is part of a parathyroid gland [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "parathyroid gland parenchyma" EXACT [] synonym: "parathyroid parenchyma" EXACT [OBOL:automatic] synonym: "parenchyma of parathyroid" EXACT [OBOL:automatic] xref: FMA:55569 xref: MA:0002677 is_a: UBERON:0000064 ! organ part is_a: UBERON:0000353 ! implied link automatically realized ! parenchyma is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: part_of UBERON:0001132 intersection_of: UBERON:0000353 ! parenchyma intersection_of: part_of UBERON:0001132 ! parathyroid gland relationship: part_of UBERON:0001132 ! parathyroid gland [Term] id: UBERON:0001750 name: lacrimal apparatus alt_id: UBERON:FMA_55605-MA_0000274 def: "The lacrimal apparatus is the physiologic system containing the orbital structures for tear production and drainage. It consists of: (a) the lacrimal gland, which secretes the tears, and its excretory ducts, which convey the fluid to the surface of the eye; (b) the lacrimal canaliculi, the lacrimal sac, and the nasolacrimal duct, by which the fluid is conveyed into the cavity of the nose. [WP,unvetted]." [Wikipedia:Lacrimal_apparatus] comment: todo - resolve canaliculus vs tear duct vs lacrimal vs nasolacrimal subset: uberon_slim synonym: "nasolacrimal drainage system" RELATED [UBERON:cjm] xref: FMA:55605 xref: GAID:901 xref: MA:0000274 xref: MESH:A.09.371.463 xref: ncithesaurus:Lacrimal_Apparatus is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0000019 ! camera-type eye [Term] id: UBERON:0001751 name: dentine alt_id: UBERON:FMA_55628-MA_0002542-ZFA_0005143 def: "a tubular mineralized tissue[H&W]. In mammals - substance of tooth produced by odontoblasts; surrounds the pulp of the tooth and is subjacent to enamel and cement[FMA]. Mineralized collagen containing substance that forms the tooth structure[ZFA]. a calcified tissue of the body, and along with enamel, cementum, and pulp is one of the four major components of teeth[WP]." [Wikipedia:Dentin, ZFIN:curator] comment: Dentine is found in the fossil record as early as the late Cambrian, in fish, where it may have had a role in electrochemical sensing of the environment as well as assisting in defense[WP]. H&W describe a continuum atubular - meta/orthodentine - mesi/semidentine - cement and without cementoblasts. TODO - odontoid tissue. Editors note: note the asserted dual is_a parentage, as dentine is both skeletal tissue and a substance subset: uberon_slim subset: vertebrate_core synonym: "dentin" EXACT [MA:0002542] synonym: "dentine of tooth" EXACT [] synonym: "predentin" NARROW [GO:0070468] xref: BTO:0003453 xref: FMA:55628 xref: GAID:1272 xref: MA:0002542 xref: MESH:A.14.254.900.280 xref: ncithesaurus:Dentin xref: SCTID:362112004 xref: TAO:0005143 xref: VAO:0000069 xref: XAO:0004051 xref: ZFA:0005143 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0001973 ! substance of tooth is_a: UBERON:0004755 ! skeletal tissue relationship: develops_from UBERON:0000924 ! ectoderm relationship: develops_from UBERON:0002342 ! neural crest [Term] id: UBERON:0001752 name: enamel alt_id: UBERON:FMA_55629-MA_0002543-ZFA_0005142 def: "A dentine-like hypermineralized substance that covers the tooth tip. Enamel's primary mineral is hydroxylapatite, which is a crystalline calcium phosphate. Unlike dentin and bone, enamel does not contain collagen. Instead, it has two unique classes of proteins called amelogenins and enamelins[WP]." [Wikipedia:Enamel, ZFIN:curator] comment: Tooth enamel is also found in the dermal denticles of sharks UBERON:0000041. For the most part, research has shown that formation in animals is almost identical to formation in humans. The enamel organ, including the dental papilla, and ameloblasts function similarly.[53] The variations of enamel that are present are infrequent but sometimes important. Differences exist, certainly, in the morphology, number, and types of teeth among animals. H&W - highly mineralized, hard, prismatic, avascular outer layer of vertebrate teeth and some scales. Enamel is unique in being the only noncollagenous mineralized vertebrate skeletal tissue (Diekwisch, 2002). The enamel proteins amelogenin, enamelin, tuftelin, MMP-20, and EMSP-1 form a highly conserved family of matrix proteins (Satchell et al., 2002). Like dentine, enamel is both odontogenic and skeletogenic; enamel covers teeth and dermal skeletal tissues. Because of its very high mineral content, enamel is much more resistant to wear than dentine; some 96% of mammalian enamel is inorganic, and only 0.5% organic. // TODO - split enamel and enameloid subset: uberon_slim subset: vertebrate_core synonym: "enamel of tooth" EXACT [] synonym: "enameloid" RELATED [] synonym: "tooth enamel" EXACT [] xref: BTO:0001844 xref: FMA:55629 xref: MA:0002543 xref: MESH:A.14.254.900.255 xref: ncithesaurus:Enamel xref: SCTID:362113009 xref: TAO:0005142 xref: VAO:0000065 xref: XAO:0004198 xref: ZFA:0005142 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0001973 ! substance of tooth is_a: UBERON:0004755 ! skeletal tissue relationship: develops_from UBERON:0000924 ! ectoderm relationship: develops_from UBERON:0003104 ! mesenchyme [Term] id: UBERON:0001753 name: cementum alt_id: UBERON:FMA_55630-MA_0002541 def: "A bone-like mineralized tissue secreted by cementoblasts on the surface of root dentine or, in some animals, crown enamel[Diekwisch 2001]. Substance of tooth produced by cementoblasts; surrounds the dentine of the root of the tooth[FMA]. a specialized calcified substance covering the root of a tooth. Cementum is excreted by cells called cementoblasts within the root of the tooth and is thickest at the root apex. Its coloration is yellowish and it is softer than enamel and dentin due to being less mineralized[WP]." [Wikipedia:Cementum] comment: Cementum, the supporting tissue that anchors mammalian and crocodylian teeth into their sockets, differs among species and can have features of dentine, of bone, and of calcified cartilage, as well as unique features. Cementum is deposited by cementoblasts onto existing dentine. As in bone and dentine, cementoblasts produce an organic matrix, the main constituent of which is collagen type I (Bosshardt, 2005), but cementum, dentine, and bone also share a number of important noncollagenous matrix components such as osteopontin, osteocalcin, bone sialoprotein, a2-HS- glycoprotein, dentine matrix protein, dentine sialoprotein, and den- tine phosphoprotein (McKee et al., 1996; Bosshardt, 2005). it has been argued that in all rodents and ruminants, cementum is a form of calcified cartilage[H&W] synonym: "cement" EXACT [] synonym: "cement of tooth" EXACT [] synonym: "cementum" EXACT [] synonym: "cementum of tooth" EXACT [] xref: BTO:0002525 xref: FMA:55630 xref: MA:0002541 xref: MESH:A.14.254.646.267 xref: ncithesaurus:Cementum xref: SCTID:362114003 xref: VAO:0000062 xref: XAO:0004196 is_a: UBERON:0001973 ! substance of tooth [Term] id: UBERON:0001754 name: dental pulp alt_id: UBERON:FMA_55631-MA_0001599 def: "the part in the center of a tooth made up of living soft tissue and cells called odontoblasts[WP]." [Wikipedia:Dental_pulp] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "dental pulp cell" RELATED [BTO:0000339] synonym: "pulp of tooth" EXACT [] synonym: "tooth pulp" EXACT [ZFA:0005141] xref: BTO:0000339 xref: FMA:55631 xref: GAID:1270 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2e/Tooth_Section.svg/200px-Tooth_Section.svg.png xref: MA:0001599 xref: MESH:A.14.254.900.260 xref: ncithesaurus:Dental_Pulp xref: OG:0001469 xref: SCTID:362110007 xref: ZFA:0005141 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0002384 ! connective tissue is_a: UBERON:0003566 ! implied link automatically realized ! head connective tissue is_a: UBERON:0003570 ! implied link automatically realized ! respiratory system connective tissue relationship: develops_from UBERON:0001763 ! dental papilla relationship: part_of UBERON:0001091 ! calcareous tooth [Term] id: UBERON:0001755 name: stylohyal alt_id: UBERON:FMA_56472-ZFA_0001511 def: "A segment in the hyoidean arch between the epihyal and tympanohyal[biology-online]. The interhyal is a small rod-like element that connects the ventral and dorsal parts of the hyoid arch. It articulates laterally with the posterior end of the epihyal and medially at the cartilaginous junction between the hyomandibula and the symplectic. It remains cartilaginous in adult zebrafish and other cypriniforms[ZFA]." [http://www.biology-online.org/dictionary/Stylohyal, ZFIN:curator] comment: TODO - check subset: vertebrate_core synonym: "distal part of styloid process" EXACT [] synonym: "interhyal bone" RELATED [] synonym: "interhyal cartilage" EXACT [] xref: FMA:56472 xref: TAO:0001511 xref: ZFA:0001511 is_a: UBERON:0005913 ! zone of bone organ [Term] id: UBERON:0001756 name: middle ear alt_id: UBERON:FMA_56513-MA_0000253-MIAA_0000146-XAO_0000191 def: "The middle ear is the air-filled cavity within the skull of vertebrates that lies between the outer ear and the inner ear. It is linked to the pharynx (and therefore to outside air) via the Eustachian tube and in mammals contains the three ear ossicles, which transmit auditory vibrations from the outer ear (via the tympanum) to the inner ear (via the oval window)[GO]." [GO:0042474, Wikipedia:Middle_ear] subset: uberon_slim synonym: "auris media" RELATED [BTO:0002099] xref: AAO:0011065 xref: BTO:0002099 xref: EHDAA:5693 xref: EHDAA2:0001181 xref: EMAPA:17000 xref: EV:0100357 xref: FMA:56513 xref: GAID:165 xref: MA:0000253 xref: MAT:0000146 xref: MESH:A.09.246.397 xref: MIAA:0000146 xref: ncithesaurus:Middle_Ear xref: NIF_GrossAnatomy:birnlex_1695 xref: OG:0000312 xref: OpenCyc:Mx4rvbw1j5wpEbGdrcN5Y29ycA xref: SCTID:181185000 xref: XAO:0000191 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001690 ! ear [Term] id: UBERON:0001757 name: pinna alt_id: UBERON:FMA_56580-MA_0000259 def: "Visible part of the ear that resides outside of the head. The purpose of the pinna is to collect sound. It does so by acting as a funnel, amplifying the sound and directing it to the ear canal. While reflecting from the pinna, sound also goes through a filtering process which adds directional information to the sound (see sound localization, head-related transfer function, pinna notch). The filtering effect of the human pinna preferentially selects sounds in the frequency range of human speech. In various species, the pinna can also signal mood and radiate heat." [Wikipedia:Pinna_(anatomy)] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "auricle" EXACT [] synonym: "auricle of ear" EXACT [] synonym: "auricle of external ear" EXACT [] synonym: "auricula" EXACT [Wikipedia:Auricula] synonym: "auricula (auris externa)" EXACT [] synonym: "pinna of ear" EXACT [] synonym: "pinnae" RELATED PLURAL [] xref: EHDAA2:0001467 xref: EMAPA:17589 xref: EV:0100355 xref: FMA:56580 xref: galen:Auricle xref: MA:0000259 xref: ncithesaurus:Auricle xref: OG:0000460 xref: OpenCyc:Mx4rvs_VC5wpEbGdrcN5Y29ycA xref: SCTID:421159007 is_a: UBERON:0001444 ! subdivision of head relationship: part_of UBERON:0001691 ! external ear [Term] id: UBERON:0001758 name: periodontium alt_id: UBERON:FMA_56665-MA_0002467 def: "The tissues that invest or help to invest and support the teeth, including the periodontal ligament, gingivae, cementum, and alveolar and supporting bone[BTO]." [BTO:0001021, Wikipedia:Periodontium] comment: note FMA treats periodontium and periodontal ligament as the same synonym: "paradentium" RELATED [MESH:A.14.254.646] synonym: "periodontal ligament" RELATED INCONSISTENT [FMA:56665] synonym: "periodontal membrane" RELATED [MA:0002467] synonym: "tooth supporting structure" RELATED [MESH:A.14.254.646] xref: BTO:0001021 xref: FMA:56665 xref: GAID:216 xref: MESH:A.14.254.646 xref: ncithesaurus:Periodontium is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0000479 {source="cjm"} ! tissue relationship: adjacent_to UBERON:0001091 ! calcareous tooth relationship: part_of UBERON:0003672 {source="cjm"} ! dentition [Term] id: UBERON:0001759 name: vagus nerve alt_id: UBERON:FMA_5731-MA_0001106-XAO_0003097-ZFA_0000453 def: "Cranial nerve that branches into the lateral (to body sense organs) and the intestino-accessorial (to the skin, muscles of shoulder, hyoid, larynx, gut, lungs, and heart)." [ISBN:0471209627, Wikipedia:Vagus_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "CN-X" RELATED [] synonym: "cranial nerve X" RELATED [] synonym: "nervus vagus" RELATED [BTO:0003472] synonym: "nervus vagus [x]" EXACT [FMA:5731, FMA:TA] synonym: "pneuomgastric nerve" RELATED [BTO:0003472] synonym: "tenth cranial nerve" EXACT [] synonym: "vagal nerve" RELATED [] synonym: "vagus" EXACT [] synonym: "Vagus nerve [X]" EXACT [] synonym: "vagus nerve tree" EXACT [] synonym: "vagus X nerve" EXACT [MA:0001106] xref: AAO:0010475 xref: BTO:0003472 xref: EFO:0002549 xref: FMA:5731 xref: GAID:721 xref: galen:VagusNerve xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5e/Gray791.png/200px-Gray791.png xref: MA:0001106 xref: MESH:A.08.800.050.050.925 xref: ncithesaurus:Vagus_Nerve xref: NIF_GrossAnatomy:birnlex_801 xref: OG:0000737 xref: OpenCyc:Mx4rviHk2ZwpEbGdrcN5Y29ycA xref: SCTID:362466001 xref: TAO:0000453 xref: XAO:0003097 xref: ZFA:0000453 is_a: UBERON:0001785 ! cranial nerve relationship: develops_from_part_of UBERON:0005073 {source="GO"} ! preganglionic parasympathetic nervous system relationship: part_of UBERON:0001033 ! gustatory system [Term] id: UBERON:0001760 name: frontal sinus alt_id: UBERON:FMA_57417-MA_0001793 def: "Sinuses are mucosa-lined airspaces within the bones of the face and skull. The frontal sinuses, situated behind the superciliary arches, are absent at birth, but are generally fairly well developed between the seventh and eighth years, only reaching their full size after puberty. The frontal bone is membranous at birth and there is rarely more than a recess until the bone tissue starts to ossify about age two. Consequently this structure does not show on radiographs before that time. Frontal sinuses are rarely symmetrical and the septum between them frequently deviates to one or other side of the middle line. Sinus development begins in the womb, but only the maxillary and ethmoid sinuses are present at birth. Approximately 5% of people have absent frontal sinuses. Their average measurements are as follows: height 28 mm, breadth 24 mm, depth 20 mm, creating a space of 6-7 ml. Each opens into the anterior part of the corresponding middle meatus of the nose through the frontonasal duct which traverses the anterior part of the labyrinth of the ethmoid. These structures then open into the hiatus semilunaris in the middle meatus. The mucous membrane in this sinus is innervated by the supraorbital nerve, which carries the postganglionic parasympathetic nerve fibers for mucous secretion from the facial nerve and supplied by the supraorbital artery and anterior ethmoidal artery. Through its copious mucus production, the sinus is an essential part of the immune defense/air filtration carried out by the nose. Nasal and sinal mucosae are ciliated and move mucus to the choanae and finally to the stomach. The thick upper layers of nasal mucus trap bacteria and small particles in tissue abundantly provided with immune cells, antibodies, and antibacterial proteins. The layers beneath are thinner and provide a substrate in which the cilia are able to beat and move the upper layer with its debris through the ostia toward the choanae. [WP,unvetted]." [Wikipedia:Frontal_sinus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "cavity of frontal bone" EXACT [FMA:57417] xref: FMA:57417 xref: GAID:357 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fb/Nnh_front.svg/200px-Nnh_front.svg.png xref: MA:0001793 xref: MESH:A.04.531.621.387 xref: ncithesaurus:Frontal_Sinus xref: OpenCyc:Mx4rvqMUR5wpEbGdrcN5Y29ycA xref: SCTID:181205008 is_a: UBERON:0001825 {source="MA"} ! paranasal sinus [Term] id: UBERON:0001761 name: foramen caecum of thyroid alt_id: UBERON:FMA_57443-MA_0000725 subset: uberon_slim synonym: "foramen caecum" BROAD [MA:0000725] xref: EHDAA:2150 xref: EHDAA:2977 xref: EHDAA2:0000550 xref: EMAPA:17069 xref: EMAPA:18828 xref: MA:0000725 xref: OG:0000826 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: part_of UBERON:0002046 ! thyroid gland [Term] id: UBERON:0001762 name: nasal concha alt_id: UBERON:FMA_57456-MA_0000286 def: "In anatomy, a nasal concha (or turbinate) is a long, narrow and curled bone shelf (shaped like an elongated sea-shell) which protrudes into the breathing passage of the nose. Turbinate bone refers to any of the scrolled spongy bones of the nasal passages in vertebrates. In humans, the turbinates divide the nasal airway into three groove-like air passages –and are responsible for forcing inhaled air to flow in a steady, regular pattern around the largest possible surface of cilia and climate controlling tissue. [WP,unvetted]." [Wikipedia:Nasal_concha] comment: Note that FMA considers nasal concha and nasal concha of ethmoid bone to be synonymous. We disambiguate these here subset: uberon_slim synonym: "concha" RELATED [EMAPA:25093] synonym: "nasal turbinate" EXACT [] synonym: "turbinate" EXACT [] synonym: "turbinate bone" EXACT [EMAPA:25093] xref: EHDAA2:0004101 xref: EMAPA:25093 xref: GAID:224 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e9/Gray153.png/200px-Gray153.png xref: MA:0000286 xref: MESH:A.02.835.232.781.324.948 xref: ncithesaurus:Nasal_Turbinate xref: OpenCyc:Mx4rv07bVJwpEbGdrcN5Y29ycA xref: SCTID:361931007 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001707 ! nasal cavity [Term] id: UBERON:0001763 name: dental papilla alt_id: UBERON:FMA_57662-MA_0001598-ZFA_0005140 def: "Tissue of the developing tooth. It is composed of pre-odontoblast and undiffentiated mesnchyme cells and connects to the basal lamina[ZFA]. The dental papilla is a condensation of ectomesenchymal cells called odontoblasts, seen in histologic sections of a developing tooth. It lies below a cellular aggregation known as the enamel organ. The dental papilla appears after 8-10 weeks intra uteral life. The dental papilla gives rise to the dentin and pulp of a tooth. The enamel organ, dental papilla, and dental follicle together forms one unit, called the tooth germ. This is of importance because all the tissues of a tooth and its supporting structures form from these distinct cellular aggregations." [Wikipedia:Dental_papilla, ZFA:0005140] comment: todo - add child terms for EMAPA. todo - check if the FMA and MA structures refer to developed structures. todo - check part_of - should perhaps be adjacent_to? subset: uberon_slim subset: vertebrate_core synonym: "dentinal papilla" RELATED [BTO:0001839] synonym: "papilla dentis" RELATED [BTO:0001839] synonym: "pharyngeal tooth mesenchyme" RELATED [ZFA:0005140] synonym: "tooth mesenchyme" RELATED [ZFA:0005140] xref: BTO:0001839 xref: FMA:57662 xref: GAID:1277 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/22/Gray1011.png/200px-Gray1011.png xref: MA:0001598 xref: MESH:A.14.254.900.720.250 xref: OG:0001465 xref: TAO:0005140 xref: VAO:0000025 xref: XAO:0004045 xref: ZFA:0005140 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0005087 {source="MESH"} ! tooth placode relationship: develops_from UBERON:0003856 {source="ZFA"} ! dental mesenchyme relationship: part_of UBERON:0001091 {source="MA"} ! calcareous tooth relationship: part_of UBERON:0001828 {source="FMA"} ! gingiva relationship: part_of UBERON:0005176 {source="BTO"} ! tooth enamel organ [Term] id: UBERON:0001764 name: maxillary sinus alt_id: UBERON:FMA_57715-MA_0001794 def: "The maxillary sinus (or Antrum of Highmore) is the largest of the paranasal sinuses, and is pyramidal in shape. [WP,unvetted]." [Wikipedia:Maxillary_sinus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "antrum of highmore" EXACT [] xref: FMA:57715 xref: GAID:358 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3d/Gray1199.png/200px-Gray1199.png xref: MA:0001794 xref: MESH:A.04.531.621.578 xref: ncithesaurus:Maxillary_Sinus xref: OpenCyc:Mx4rvp2ZWJwpEbGdrcN5Y29ycA xref: SCTID:181204007 is_a: UBERON:0001825 ! paranasal sinus [Term] id: UBERON:0001765 name: mammary duct alt_id: UBERON:FMA_58006-MA_0000791 def: "Epithelial tube that transports milk[GO]." [GO:0060603, Wikipedia:Lactiferous_duct] comment: This structure regresses in most males subset: uberon_slim synonym: "ductus lactiferi" RELATED [BTO:0002845] synonym: "galactophorous tubule" RELATED [BTO:0002845] synonym: "lactiferous duct" EXACT [FMA:58006] synonym: "lactiferous tubule" RELATED [BTO:0002845] synonym: "mammary gland duct" EXACT [] xref: BTO:0002845 xref: FMA:58006 xref: MA:0000791 xref: ncithesaurus:Lactiferous_Duct xref: SCTID:361719004 is_a: UBERON:0000058 ! implied link automatically realized ! duct is_a: UBERON:0003244 ! implied link automatically realized ! epithelium of mammary gland is_a: UBERON:0003914 ! epithelial tube relationship: part_of UBERON:0001911 intersection_of: UBERON:0000058 ! duct intersection_of: part_of UBERON:0001911 ! mammary gland [Term] id: UBERON:0001766 name: anterior chamber of eyeball alt_id: UBERON:FMA_58078-MA_0000262 def: "the fluid-filled space inside the eye between the iris and the cornea's innermost surface, the endothelium.[1] Aqueous humor is the fluid that fills the anterior chamber. Hyphema and glaucoma are two main pathologies in this area. In hyphema, blood fills the anterior chamber. In glaucoma, blockage of the canal of Schlemm prevents the normal outflow of aqueous humor, resulting in accumulation of fluid, increased intraocular pressure, and eventually blindness." [Wikipedia:Anterior_chamber_of_eyeball] comment: This class was created automatically from a combination of ontologies synonym: "anterior chamber" EXACT [HP:0000593, MP:0010709] synonym: "anterior chamber of eye" EXACT [] synonym: "camera anterior" EXACT [] synonym: "eye anterior chamber" EXACT [] xref: BTO:0002084 xref: EHDAA:9033 xref: EHDAA2:0000129 xref: EMAPA:18231 xref: FMA:58078 xref: GAID:889 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Schematic_diagram_of_the_human_eye_en.svg/200px-Schematic_diagram_of_the_human_eye_en.svg.png xref: MA:0000262 xref: MESH:A.09.371.060.067 xref: ncithesaurus:Anterior_Chamber_of_the_Eye xref: OG:0001431 xref: SCTID:181160009 is_a: UBERON:0006311 ! chamber of eyeball relationship: part_of UBERON:0001801 ! anterior segment of eyeball [Term] id: UBERON:0001767 name: posterior chamber of eyeball alt_id: UBERON:FMA_58080-MA_0002460 def: "a narrow chink behind the peripheral part of the iris of the lens, and in front of the suspensory ligament of the lens and the ciliary processes the Posterior Chamber consists of small space directly posterior of the Iris but anterior to the lens." [Wikipedia:Posterior_chamber_of_eyeball] comment: The posterior chamber should not be confused with vitreous chamber. synonym: "camera posterior" EXACT [] synonym: "eye posterior chamber" EXACT [] synonym: "posterior chamber of eye" EXACT [] xref: BTO:0002086 xref: FMA:58080 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/55/Gray883.png/200px-Gray883.png xref: MA:0002460 xref: ncithesaurus:Posterior_Chamber_of_the_Eye xref: OpenCyc:Mx4rvnYe8pwpEbGdrcN5Y29ycA xref: SCTID:362504004 is_a: UBERON:0006311 ! chamber of eyeball relationship: part_of UBERON:0001801 ! anterior segment of eyeball [Term] id: UBERON:0001768 name: vascular layer of eyeball alt_id: UBERON:FMA_58103-MA_0002480 def: "pigmented middle of the three concentric layers that make up an eye[WP]. The pigmented vascular coat of the eyeball, consisting of the CHOROID; CILIARY BODY; and IRIS, which are continuous with each other. (Cline et al., Dictionary of Visual Science, 4th ed)[GAID]." [Wikipedia:Uvea] comment: TODO - check child terms, isa vs partof subset: uberon_slim synonym: "tunica vasculosa of eyeball" EXACT [] synonym: "uvea" EXACT [] synonym: "uveal tract" EXACT [] xref: FMA:58103 xref: GAID:912 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/eb/Gray869.png/200px-Gray869.png xref: MA:0002480 xref: MESH:A.09.371.894 xref: ncithesaurus:Uvea xref: SCTID:280648000 is_a: UBERON:0002049 ! vasculature is_a: UBERON:0002203 ! implied link automatically realized ! vasculature of eye relationship: part_of UBERON:0001801 ! anterior segment of eyeball [Term] id: UBERON:0001769 name: iris alt_id: UBERON:FMA_58235-MA_0000273-XAO_0000185-ZFA_0001238 def: "a membrane in the eye, responsible for controlling the amount of light reaching the retina. The iris consists of pigmented fibrovascular tissue known as a stroma. It is the most forward portion of the eye and the only one seen on superficial inspection. The stroma connects a sphincter muscle (sphincter pupillae), which contracts the pupil, and a set of dilator muscles (dilator pupillae) which open it. The back surface is covered by a heavily pigmented epithelial layer two cells thick (the iris pigment epithelium), but the front surface has no epithelium. The high pigment content blocks light from passing through the iris and restricts it to the pupil. The outer edge of the iris, known as the root, is attached to the sclera and the anterior ciliary body. The iris and ciliary body together are known as the anterior uvea. Just in front of the root of the iris is the region through which the aqueous humour constantly drains out of the eye, with the result that diseases of the iris often have important effects on intraocular pressure, and indirectly on vision. Depending on the amount of light, the iris makes the pupil larger or smaller." [Wikipedia:Iris_(anatomy)] comment: MA and FMA differ regarding isa vs partof to vascular layer subset: uberon_slim subset: vertebrate_core synonym: "anterior uvea" RELATED [] xref: AAO:0010347 xref: BTO:0000653 xref: EMAPA:19154 xref: EV:0100345 xref: FMA:58235 xref: GAID:917 xref: MA:0000273 xref: MESH:A.09.371.894.513 xref: ncithesaurus:Iris xref: OG:0000101 xref: OpenCyc:Mx4rvVjbppwpEbGdrcN5Y29ycA xref: SCTID:181164000 xref: TAO:0001238 xref: XAO:0000185 xref: ZFA:0001238 is_a: UBERON:0001768 {source="FMA"} ! vascular layer of eyeball is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: develops_from UBERON:0004128 {source="XAO"} ! optic vesicle relationship: part_of UBERON:0000019 {source="FMA"} ! camera-type eye [Term] id: UBERON:0001770 name: lacrimal canaliculus alt_id: UBERON:FMA_58245-MA_0001294 def: "The lacrimal canaliculi, also known as the lacrimal canals or lacrimal ducts, are the small channels in each eyelid that commence at minute orifices, termed puncta lacrimalia, on the summits of the papillae lacrimales, seen on the margins of the lids at the lateral extremity of the lacus lacrimalis. The superior duct, the smaller and shorter of the two, at first ascends, and then bends at an acute angle, and passes medialward and downward to the lacrimal sac. The inferior duct at first descends, and then runs almost horizontally to the lacrimal sac. At the angles they are dilated into ampullæ. Microscopically, they are lined by nonkeratinizing stratified squamous epithelium surrounded by fibrous tissue. Outside the latter is a layer of striped muscle, continuous with the lacrimal part of the Orbicularis oculi; at the base of each lacrimal papilla the muscular fibers are circularly arranged and form a kind of sphincter. [WP,unvetted]." [Wikipedia:Lacrimal_canaliculus] comment: todo - resolve canaliculus vs tear duct vs lacrimal vs nasolacrimal subset: uberon_slim xref: FMA:58245 xref: MA:0001294 xref: ncithesaurus:Lacrimal_Canaliculus xref: SCTID:263348000 is_a: UBERON:0000063 ! organ segment relationship: part_of UBERON:0001850 ! lacrimal duct [Term] id: UBERON:0001771 name: pupil alt_id: UBERON:FMA_58252-MA_0001292-XAO_0000283-ZFA_0001283 def: "sphere that is located in the center of the iris of the eye and that controls the amount of light that enters the eye." [Wikipedia:Pupil] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core xref: AAO:0010351 xref: FMA:58252 xref: GAID:918 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/65/Eye_iris.jpg/200px-Eye_iris.jpg xref: MA:0001292 xref: MESH:A.09.371.894.513.780 xref: ncithesaurus:Pupil xref: OG:0000116 xref: OpenCyc:Mx4rvViBr5wpEbGdrcN5Y29ycA xref: SCTID:35146001 xref: TAO:0001283 xref: XAO:0000283 xref: ZFA:0001283 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0001769 ! iris [Term] id: UBERON:0001772 name: corneal epithelium alt_id: UBERON:FMA_58263-MA_0001243 def: "The corneal epithelium (epithelium corneæ anterior layer) is made up of epithelial tissue and covers the front of the cornea. It consists of several layers of cells. The cells of the deepest layer are columnar; then follow two or three layers of polyhedral cells, the majority of which are prickle cells similar to those found in the stratum mucosum of the cuticle. Lastly, there are three or four layers of squamous cells, with flattened nuclei. [WP,unvetted]." [Wikipedia:Corneal_epithelium] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "anterior corneal epithelium" EXACT [] synonym: "anterior endothelium of cornea" RELATED [BTO:0000287] synonym: "cornea epithelial tissue" EXACT [OBOL:automatic] synonym: "cornea epithelium" EXACT [OBOL:automatic] synonym: "endothelium anterius corneae" RELATED [BTO:0000287] synonym: "endothelium camerae anterioris bulbi" RELATED [BTO:0000287] synonym: "endothelium corneale" RELATED [BTO:0000287] synonym: "epithelial tissue of cornea" EXACT [OBOL:automatic] synonym: "epithelium anterius (cornea)" EXACT [] synonym: "epithelium anterius corneae" EXACT [FMA:58263, FMA:TA] synonym: "epithelium of cornea" EXACT [] synonym: "epithelium posterius corneae" RELATED [BTO:0000287] synonym: "external epithelium of cornea" EXACT [] xref: BTO:0000287 xref: EFO:0001917 xref: EMAPA:17162 xref: FMA:58263 xref: GAID:895 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Gray871.png/200px-Gray871.png xref: MA:0001243 xref: MESH:A.09.371.060.217.325 xref: ncithesaurus:Corneal_Epithelium xref: SCTID:15775008 xref: ZFA:0001683 is_a: UBERON:0000488 ! atypical epithelium is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0007625 ! implied link automatically realized ! pigment epithelium of eye relationship: part_of UBERON:0000964 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000964 ! cornea relationship: part_of UBERON:0000964 ! cornea [Term] id: UBERON:0001773 name: sclera alt_id: UBERON:FMA_58269-MA_0000280-XAO_0000183 def: "The sclera, also known as the white part of the eye, is the opaque (usually white, though certain animals, such as horses and lizards, can have black sclera), fibrous, protective, outer layer of the eye containing collagen and elastic fiber. It is derived from the neural crest. In children, it is thinner and shows some of the underlying pigment, appearing slightly blue. In the elderly, however, fatty deposits on the sclera can make it appear slightly yellow. The sclera forms the posterior five sixths of the connective tissue coat of the globe. It is continuous with the dura mater and the cornea, and maintains the shape of the globe, offering resistance to internal and external forces, and provides an attachment for the extraocular muscle insertions. The sclera is perforated by plenty of nerves and vessels passing through the posterior scleral foramen, the hole that is formed by the optic nerve. At the optic disk the outer two-thirds of the sclera continues with the dura mater (outer coat of the brain) via the dural sheath of the optic nerve. The inner third joins with some choroidal tissue to form a plate (lamina cribrosa) across the optic nerve with perforations through which the optic fibers (fasciculi). The thickness of the sclera varies from 1mm at the posterior pole to 0.3 mm just behind the rectus muscle insertions. The sclera's blood vessels are mainly on the surface, and together with the conjunctiva (which lies on top) This is a thin layer covering the sclera. Along with the vessels of the conjunctiva, those of the sclera renders the inflamed eye bright red. [WP,unvetted]." [Wikipedia:Sclera] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core xref: AAO:0010354 xref: BTO:0001606 xref: EMAPA:19027 xref: EV:0100342 xref: FMA:58269 xref: GAID:911 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Schematic_diagram_of_the_human_eye_en.svg/200px-Schematic_diagram_of_the_human_eye_en.svg.png xref: MA:0000280 xref: MESH:A.09.371.784 xref: ncithesaurus:Sclera xref: OG:0001274 xref: OpenCyc:Mx4rv7yR55wpEbGdrcN5Y29ycA xref: SCTID:181163006 xref: XAO:0000183 xref: ZFA:0005563 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0000019 ! camera-type eye [Term] id: UBERON:0001774 name: muscle of trunk alt_id: UBERON:FMA_58274-MA_0000514 def: "Muscle organ which is a part of the trunk. Examples: external intercostal muscle, external oblique, levator ani." [] comment: TODO - check muscle organ vs musculature subset: uberon_slim subset: vertebrate_core synonym: "body musculature" EXACT [ZFA:0000473] synonym: "muscle organ of torso" EXACT [OBOL:automatic] synonym: "muscle organ of trunk" EXACT [OBOL:automatic] synonym: "torso muscle organ" EXACT [OBOL:automatic] synonym: "trunk muscle" EXACT [] synonym: "trunk muscle organ" EXACT [OBOL:automatic] synonym: "trunk musculature" EXACT [] xref: AAO:0000611 xref: EFO:0003531 xref: FMA:58274 xref: MA:0000514 xref: XAO:0003230 xref: ZFA:0000473 is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0005177 ! implied link automatically realized ! trunk organ relationship: part_of UBERON:0002100 intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0002100 ! trunk [Term] id: UBERON:0001775 name: ciliary body alt_id: UBERON:FMA_58295-MA_0000264-XAO_0000186-ZFA_0001203 def: "circumferential tissue inside the eye composed of the ciliary muscle and ciliary processes." [Wikipedia:Ciliary_body] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "anterior uvea" RELATED [] synonym: "corpus ciliare" RELATED [Wikipedia:Ciliary_body] xref: AAO:0010341 xref: BTO:0000260 xref: EMAPA:19065 xref: EV:0100346 xref: FMA:58295 xref: GAID:916 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Schematic_diagram_of_the_human_eye_en.svg/200px-Schematic_diagram_of_the_human_eye_en.svg.png xref: MA:0000264 xref: MESH:A.09.371.894.280 xref: ncithesaurus:Ciliary_Body xref: OG:0000102 xref: SCTID:263340007 xref: TAO:0001203 xref: XAO:0000186 xref: ZFA:0001203 is_a: UBERON:0001768 ! vascular layer of eyeball [Term] id: UBERON:0001776 name: choroid alt_id: UBERON:FMA_58298-MA_0000263 def: "vascular layer containing connective tissue, of the eye lying between the retina and the sclera. In humans its thickness is about 0.5 mm. The choroid provides oxygen and nourishment to the outer layers of the retina [1]. Along with the ciliary body and iris, the choroid forms the uveal tract[WP]." [Wikipedia:Choroid] subset: uberon_slim subset: vertebrate_core synonym: "chorioid" RELATED [BTO:0001829] synonym: "choroid coat" EXACT [Wikipedia:Choroid] synonym: "choroidea" EXACT [Wikipedia:Choroid] synonym: "optic choroid" EXACT [ZFA:0005229] synonym: "posterior uvea" EXACT [Wikipedia:Uvea#Regions] xref: BTO:0001829 xref: EMAPA:19077 xref: EV:0100347 xref: FMA:58298 xref: GAID:913 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Schematic_diagram_of_the_human_eye_en.svg/200px-Schematic_diagram_of_the_human_eye_en.svg.png xref: MA:0000263 xref: MESH:A.09.371.894.223 xref: ncithesaurus:Choroid xref: SCTID:181172003 xref: ZFA:0005229 is_a: UBERON:0001768 ! vascular layer of eyeball relationship: adjacent_to UBERON:0000966 ! retina relationship: adjacent_to UBERON:0001773 ! sclera relationship: part_of UBERON:0001768 ! vascular layer of eyeball [Term] id: UBERON:0001777 name: substantia propria of cornea alt_id: UBERON:FMA_58306-MA_0001245 def: "The substantia propria (or stroma of cornea) is fibrous, tough, unyielding, and perfectly transparent. It is composed of about 200 flattened lamellæ (plates of collagen fibrils), superimposed one on another. They are each about 1.5-2.5 micrometres in thickness. These fibrils run at different angles between the limbi. Fibres of the layers frequently interweave, the anterior lamellæ interweaving more than posterior lamellæ. The fibres of each lamella are parallel with one another, but at right angles to those of adjacent lamellæ. The lamellæ are produced by keratocytes (corneal corpuscles), which occupy about 10% of the substantia propria. These lamellæ are made up of bundles of modified connective tissue, the fibres of which are directly continuous with those of the sclera. More collagen fibres run in a temporal-nasal direction than run in the superior-inferior direction. This is often ignored by corneal transplant surgeons, leading to poor corneal mechanical strength in corneal transplant patients. [WP,unvetted]." [Wikipedia:Corneal_stroma] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "corneal stroma" EXACT [] synonym: "stroma of cornea" EXACT [] synonym: "substantia propria" RELATED [] xref: EFO:0002514 xref: EMAPA:17602 xref: FMA:58306 xref: GAID:893 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Gray871.png/200px-Gray871.png xref: MA:0001245 xref: MESH:A.09.371.060.217.228 xref: ncithesaurus:Corneal_Stroma xref: SCTID:362511000 xref: ZFA:0001685 is_a: UBERON:0003566 ! implied link automatically realized ! head connective tissue is_a: UBERON:0003891 ! stroma is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0000964 ! cornea [Term] id: UBERON:0001778 name: ciliary epithelium alt_id: UBERON:FMA_58464-MA_0001238 def: "An epithelium that is part of a ciliary body [Obol]." [OBOL:automatic] synonym: "ciliary body epithelium" EXACT [FMA:58464] synonym: "epithelium of ciliary body" EXACT [FMA:58464] xref: BTO:0001770 xref: FMA:58464 xref: MA:0001238 xref: ncithesaurus:Ciliary_Epithelium xref: SCTID:280870004 is_a: UBERON:0000488 {source="FMA"} ! atypical epithelium is_a: UBERON:0007625 ! implied link automatically realized ! pigment epithelium of eye relationship: part_of UBERON:0001775 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001775 ! ciliary body relationship: part_of UBERON:0001775 {source="MA"} ! ciliary body [Term] id: UBERON:0001779 name: iris stroma alt_id: UBERON:FMA_58526-MA_0002777 def: "the delicate vascular connective tissue that lies between the anterior surface of the iris and the pars iridica retinae." [http://www.drugs.com/dict/stroma-of-iris.html, Wikipedia:Iris_stroma] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "iridial stroma" EXACT [] synonym: "stroma of iris" EXACT [] xref: FMA:58526 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/55/Gray883.png/200px-Gray883.png xref: MA:0002777 xref: SCTID:280882008 xref: ZFA:0005569 is_a: UBERON:0003566 ! implied link automatically realized ! head connective tissue is_a: UBERON:0003891 ! stroma is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001769 ! iris [Term] id: UBERON:0001780 name: spinal nerve alt_id: UBERON:FMA_5858-MA_0000233-XAO_0003101 def: "Neural tree (organ) which is directly continuous with the spinal cord. Examples: Fifth cervical spinal nerve, third lumbar spinal nerve." [Wikipedia:Spinal_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "backbone nerve" EXACT [OBOL:automatic] synonym: "nerve of backbone" EXACT [OBOL:automatic] synonym: "nerve of spinal column" EXACT [OBOL:automatic] synonym: "nerve of spine" EXACT [OBOL:automatic] synonym: "nerve of vertebral column" EXACT [OBOL:automatic] synonym: "spinal column nerve" EXACT [OBOL:automatic] synonym: "spinal nerve tree" EXACT [] synonym: "spine nerve" EXACT [OBOL:automatic] synonym: "vertebral column nerve" EXACT [OBOL:automatic] xref: AAO:0011101 xref: BTO:0000870 xref: EHDAA:2895 xref: EHDAA2:0001898 xref: EMAPA:16989 xref: FMA:5858 xref: GAID:841 xref: MA:0000233 xref: MESH:A.08.800.800.720 xref: ncithesaurus:Spinal_Nerve xref: OG:0000824 xref: OpenCyc:Mx4rwK_iFJwpEbGdrcN5Y29ycA xref: SCTID:361099009 xref: XAO:0003101 is_a: UBERON:0001021 ! nerve relationship: continuous_with UBERON:0002240 intersection_of: UBERON:0001021 ! nerve intersection_of: continuous_with UBERON:0002240 ! spinal cord relationship: part_of UBERON:0000010 ! peripheral nervous system [Term] id: UBERON:0001781 name: layer of retina alt_id: UBERON:FMA_58617-MA_0001319-XAO_0000266 def: "any of the layers that make up the retina[MP]." [MP:0003727] comment: Note that MA does not treat internal/external limiting memranes as layers - these are classified as laminae. Here we follow other ontologies in grouping with other layers. MA also treats retinal pigment epithelium and neural retina epithelium as distinct from the layers. We follow ontologies such as FMA and ZFA in first dividing into pigmented and neural layers - these are also classified as layers, giving us over the usual 10 layers subset: vertebrate_core synonym: "retina layer" EXACT [] synonym: "retina neuronal layer" EXACT [MP:0006069] synonym: "retinal layer" EXACT [] synonym: "retinal neuronal layer" EXACT [MP:0006069] xref: AAO:0010353 xref: FMA:58617 xref: MA:0001318 xref: MA:0001319 xref: ncithesaurus:Retina_Layer xref: SCTID:280657006 xref: XAO:0000266 is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0004923 ! organ component layer relationship: part_of UBERON:0000966 ! retina [Term] id: UBERON:0001782 name: pigmented layer of retina alt_id: UBERON:FMA_58627-MA_0000279-ZFA_0000144 def: "A monolayer of pigmented epithelium covering the neural retina; develops from the outer of the two layers of the optic cup[ZFA]. the pigmented cell layer just outside the neurosensory retina that nourishes retinal visual cells, and is firmly attached to the underlying choroid and overlying retinal visual cells[WP]." [Wikipedia:Retinal_pigment_epithelium, ZFIN:curator] comment: editor note - we follow ontologies such as FMA and ZFA in first dividing into pigmented and neural layers subset: uberon_slim subset: vertebrate_core synonym: "epithelium, retinal pigment" RELATED [BTO:0001177] synonym: "outer pigmented layer of retina" EXACT [] synonym: "pigment epithelium of retina" EXACT [] synonym: "pigmented epithelium" RELATED [] synonym: "pigmented retina" RELATED [] synonym: "pigmented retinal epithelium" EXACT [] synonym: "PRE" RELATED [] synonym: "retinal pigment epithelium" EXACT [MP:0005201, Wikipedia:Retinal_pigment_epithelium] synonym: "retinal pigmented epithelium" EXACT [] synonym: "retinal pigmented epithelium" EXACT [ZFA:0000144] synonym: "RPE" RELATED [] synonym: "stratum pigmentosum (retina)" EXACT [] xref: AAO:0011096 xref: BTO:0001177 xref: EHDAA:4765 xref: EHDAA2:0001465 xref: EMAPA:17172 xref: FMA:58627 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/55/Gray881.png/200px-Gray881.png xref: MA:0000279 xref: ncithesaurus:Retinal_Pigment_Epithelium xref: OG:0000536 xref: SCTID:280662007 xref: TAO:0000144 xref: XAO:0003217 xref: ZFA:0000144 is_a: UBERON:0000483 ! epithelium is_a: UBERON:0001781 ! implied link automatically realized ! layer of retina is_a: UBERON:0007625 ! implied link automatically realized ! pigment epithelium of eye relationship: develops_from UBERON:0005424 intersection_of: UBERON:0001781 ! layer of retina intersection_of: develops_from UBERON:0005424 ! presumptive retinal pigmented epithelium relationship: adjacent_to UBERON:0001787 {source="Wikipedia"} ! photoreceptor layer of retina relationship: adjacent_to UBERON:0003902 ! retinal neural layer [Term] id: UBERON:0001783 name: optic disc alt_id: UBERON:FMA_58634-MA_0000278 def: "The optic disc or optic nerve head is the location where ganglion cell axons exit the eye to form the optic nerve. There are no light sensitive rods or cones to respond to a light stimulus at this point. This causes a break in the visual field called 'the blind spot' or the 'physiological blind spot'. The optic nerve head in a normal human eye carries from 1 to 1.2 million neurons from the eye towards the brain. [WP,unvetted]." [Wikipedia:Optic_disc] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: EFO:0001974 xref: EHDAA:9077 xref: EHDAA2:0001307 xref: EMAPA:18238 xref: EMAPA:25088 xref: FMA:58634 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ed/Gray879.png/200px-Gray879.png xref: MA:0000278 xref: ncithesaurus:Optic_Disc xref: OG:0000551 xref: SCTID:362518006 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0000966 ! retina [Term] id: UBERON:0001784 name: macula lutea alt_id: UBERON:FMA_58637-MA_0001306-ZFA_0000386 comment: Obsoleted as it accidentally grouped macula and macula lutea is_obsolete: true consider: UBERON:0000053 consider: UBERON:0000054 [Term] id: UBERON:0001785 name: cranial nerve alt_id: UBERON:FMA_5865-MA_0000215-XAO_0003089-ZFA_0000641 def: "Neural tree organ which is continuous with the brain. Examples: Trochlear nerve, facial nerve[FMA]. // Any of the major paired nerves of the head region. // Twelve pairs of cranial nerves exit/enter the cranium through openings in the skull. The nerves contain efferent axons with motor and glandular functions, as well as afferent axons from cranial ganglia with sensory functions. The nerves are numbered in a rostral to caudal sequence, with the exception of the lateral line nerves." [Wikipedia:Cranial_nerve, XB:curator, ZFIN:curator] comment: note not classified as nerve in FMA. Note the structure of EMAPA is rather odd here - EMAPA:17264 (nerve of CNS) has a single child, cranial. We make EMAPA:17264 a subclass of this structure, as this appears to be the intent subset: uberon_slim subset: vertebrate_core synonym: "cranial nerves" RELATED [] synonym: "cranial neural tree organ" EXACT [] xref: AAO:0000108 xref: BTO:0001104 xref: EHDAA2:0000323 xref: EMAPA:17263 xref: EMAPA:17264 xref: FMA:5865 xref: GAID:802 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Brain_human_normal_inferior_view_with_labels_en.svg/200px-Brain_human_normal_inferior_view_with_labels_en.svg.png xref: MA:0000215 xref: MESH:A.08.800.800.120 xref: ncithesaurus:Cranial_Nerve xref: NIF_GrossAnatomy:birnlex_1623 xref: OG:0000279 xref: OpenCyc:Mx4rvWvJVpwpEbGdrcN5Y29ycA xref: SCTID:244447006 xref: TAO:0000641 xref: XAO:0003089 xref: ZFA:0000641 is_a: UBERON:0001021 ! nerve relationship: continuous_with UBERON:0000955 intersection_of: UBERON:0001021 ! nerve intersection_of: continuous_with UBERON:0000955 ! brain relationship: continuous_with UBERON:0000955 ! brain [Term] id: UBERON:0001786 name: fovea centralis alt_id: UBERON:FMA_58658-MA_0001307 def: "a part of the eye, located in the center of the macula region of the retina. [1] [2] The fovea is responsible for sharp central vision (also called foveal vision). The fovea is surrounded by the parafovea belt, and the perifovea outer region:[2] the parafovea is the intermediate belt where the ganglion cell layer is composed of more than five rows of cells; as well as the highest density of cones; the perifovea is the outermost region where the ganglion cell layer contains two to four rows of cells, and is where visual acuity is below the optimum. The perifovea contains an even more diminished density of cones, having 12 per 100 micrometres versus 50 per 100 micrometres in the most central fovea. This, in turn, is surrounded by a larger peripheral area that delivers highly compressed information of low resolution. Approximately 50% of the nerve fibers in the optic nerve carry information from the fovea, while the other 50% carry information from the rest of the retina. The parafovea extends to a distance of 1¼ mm from the central fovea, and the perifovea is found 2¾ mm away from the fovea centralis[WP]." [Wikipedia:Fovea_centralis_in_macula] comment: As an anatomical term, there are several foveae around the body, including in the head of the femur.(WP) subset: uberon_slim synonym: "centre of macula" EXACT [NIF_GrossAnatomy:birnlex_2543] synonym: "fovea" EXACT [] synonym: "fovea centralis in macula" EXACT [Wikipedia:Fovea_centralis_in_macula] xref: EV:0100350 xref: FMA:58658 xref: GAID:910 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Schematic_diagram_of_the_human_eye_en.svg/200px-Schematic_diagram_of_the_human_eye_en.svg.png xref: MA:0001307 xref: MESH:A.09.371.729.522.436 xref: ncithesaurus:Fovea_Centralis xref: NIF_GrossAnatomy:birnlex_2543 xref: SCTID:264479005 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0000053 ! macula lutea [Term] id: UBERON:0001787 name: photoreceptor layer of retina alt_id: UBERON:FMA_58680-MA_0001308 def: "The layer within the retina where the photoreceptor cell receptor segments reside." [Wikipedia:Layer_of_rods_and_cones, ZFA:0000143] comment: we follow MA and ZFA in subdividing this into inner and outer segments subset: uberon_slim subset: vertebrate_core synonym: "layer of rods and cones" RELATED [] synonym: "retina photoreceptor layer" EXACT [] synonym: "retinal photoreceptor layer" EXACT [ZFA:0000143] synonym: "stratum segmentorum externorum et internorum (retina)" EXACT [] xref: FMA:58680 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/55/Gray881.png/200px-Gray881.png xref: MA:0001308 xref: ncithesaurus:Layer_of_the_Rods_and_Cones xref: OG:0001165 xref: XAO:0003215 xref: ZFA:0000143 is_a: UBERON:0001781 ! layer of retina is_a: UBERON:0003902 ! implied link automatically realized ! retinal neural layer relationship: adjacent_to UBERON:0001788 ! outer limiting layer of retina relationship: part_of UBERON:0003902 ! retinal neural layer [Term] id: UBERON:0001788 name: outer limiting layer of retina alt_id: UBERON:FMA_58683-MA_0001309 def: "the row of jucntional complexes between the plasma membranes of rod segments and the Muller glia cells; this barrier separates the layer of inner and outer segments of the rods and cones from the outer nuclear layer and forms a blood-retina barrier[MP]." [MP:0010236] subset: vertebrate_core synonym: "external limiting lamina of retina" EXACT [] synonym: "external limiting membrane" EXACT [ZFA:0001331] synonym: "external limiting membrane of retina" EXACT [] synonym: "outer limiting membrane" EXACT [XAO:0003224] synonym: "outer limiting membrane of retina" EXACT [] synonym: "retina external limiting lamina" EXACT [] synonym: "retina outer limiting membrane" EXACT [MP:0010236] synonym: "stratum limitans externum (retina)" EXACT [] xref: FMA:58683 xref: MA:0001309 xref: ncithesaurus:Outer_Limiting_Membrane xref: SCTID:280676008 xref: XAO:0003224 xref: ZFA:0001331 is_a: UBERON:0007619 ! limiting membrane of retina relationship: adjacent_to UBERON:0001789 ! outer nuclear layer of retina [Term] id: UBERON:0001789 name: outer nuclear layer of retina alt_id: UBERON:FMA_58684-MA_0001315 def: "The layer within the retina where the photoreceptor cell bodies reside." [ZFA:0001464] comment: This class was created automatically from a combination of ontologies subset: vertebrate_core synonym: "ONL" NARROW [] synonym: "retina outer nuclear layer" EXACT [] synonym: "retinal outer nuclear layer" EXACT [] synonym: "stratum nucleare externum (retina)" EXACT [] xref: EMAPA:19157 xref: FMA:58684 xref: MA:0001315 xref: OG:0001170 xref: SCTID:280678009 xref: XAO:0003219 xref: ZFA:0001464 is_a: UBERON:0001781 ! layer of retina is_a: UBERON:0003902 ! implied link automatically realized ! retinal neural layer relationship: adjacent_to UBERON:0001790 ! outer plexiform layer of retina relationship: part_of UBERON:0003902 ! retinal neural layer [Term] id: UBERON:0001790 name: outer plexiform layer of retina alt_id: UBERON:FMA_58685-MA_0001316 def: "The layer within the retina where the bipolar cells synapse with the photoreceptor cells[ZFA]. Between the inner and outer nuclear layers, the outer plexiform layer (OPL) contains connections between the photoreceptors and bipolar and horizontal cells[GO]." [ZFA:0001330] comment: This class was created automatically from a combination of ontologies subset: vertebrate_core synonym: "external plexiform layer" EXACT [BTO:0003174] synonym: "OPL" NARROW [] synonym: "outer plexiform layer" EXACT [BTO:0003174] synonym: "retina outer plexiform layer" EXACT [] synonym: "retinal outer plexiform layer" EXACT [] synonym: "stratum plexiforme externum" EXACT [] xref: BTO:0003174 xref: FMA:58685 xref: MA:0001316 xref: ncithesaurus:Outer_Plexiform_Layer xref: NIF_GrossAnatomy:nlx_anat_20090403 xref: OG:0001171 xref: SCTID:280684007 xref: XAO:0003218 xref: ZFA:0001330 is_a: UBERON:0001781 ! layer of retina is_a: UBERON:0003902 ! implied link automatically realized ! retinal neural layer relationship: adjacent_to UBERON:0001791 ! inner nuclear layer of retina relationship: part_of UBERON:0003902 ! retinal neural layer [Term] id: UBERON:0001791 name: inner nuclear layer of retina alt_id: UBERON:FMA_58686-MA_0001311 def: "The layer of the retina composed of the cell bodies of bipolar cells, horizontal cells, and some of the cell bodies of amacrine cells." [BTO:0003176] comment: This class was created automatically from a combination of ontologies subset: vertebrate_core synonym: "INL" NARROW [] synonym: "intermediate cell layer" EXACT [ZFA:0000119] synonym: "retina inner nuclear layer" EXACT [] synonym: "retinal inner nuclear layer" EXACT [] synonym: "stratum nucleare internum" EXACT [] xref: BTO:0003176 xref: EMAPA:19155 xref: FMA:58686 xref: MA:0001311 xref: NIF_GrossAnatomy:nlx_anat_1005031 xref: OG:0001167 xref: SCTID:362520009 xref: XAO:0003221 xref: ZFA:0000119 is_a: UBERON:0001781 ! layer of retina is_a: UBERON:0003902 ! implied link automatically realized ! retinal neural layer relationship: adjacent_to UBERON:0001795 ! inner plexiform layer of retina relationship: part_of UBERON:0003902 ! retinal neural layer [Term] id: UBERON:0001792 name: ganglionic layer of retina alt_id: UBERON:FMA_58687-MA_0001310 def: "a layer of the retina that consists of retinal ganglion cells[WP]. innermost nuclear layer of the retina, which contains neurons that project axons through the optic nerve to the brain." [Wikipedia:Ganglion_cell_layer] comment: Check exact synonyms in ZFA / XAO subset: uberon_slim subset: vertebrate_core synonym: "ganglion cell layer" EXACT [FMA:58687, ZFA:0000024] synonym: "ganglionic cell layer of retina" EXACT [FMA:58687] synonym: "GCL layer" EXACT [] synonym: "retina ganglion cell layer" EXACT [] synonym: "retina ganglion layer" EXACT [] synonym: "retinal ganglion cell layer" EXACT [] synonym: "retinal ganglion layer" EXACT [MP:0008510] synonym: "RGC layer" EXACT [] synonym: "stratum ganglionicum (retina)" EXACT [FMA:58687] xref: BTO:0003398 xref: FMA:58687 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/55/Gray881.png/200px-Gray881.png xref: MA:0001310 xref: ncithesaurus:Ganglion_Cell_Layer xref: NIF_GrossAnatomy:nlx_anat_1005030 xref: OG:0001166 xref: SCTID:280670002 xref: XAO:0003223 xref: ZFA:0000024 is_a: UBERON:0001781 {source="FMA"} ! layer of retina is_a: UBERON:0003902 ! implied link automatically realized ! retinal neural layer relationship: adjacent_to UBERON:0001793 ! nerve fiber layer of retina relationship: part_of UBERON:0003902 {source="FMA"} ! retinal neural layer [Term] id: UBERON:0001793 name: nerve fiber layer of retina alt_id: UBERON:0005888 alt_id: UBERON:FMA_58688-MA_0001314 def: "Fiber layer adjacent the retinal ganglion cell layer which is comprised of their axons as they traverse to the optic nerve[ZFA]. The retinal nerve fiber layer (nerve fiber layer, stratum opticum, RNFL) is formed by the expansion of the fibers of the optic nerve; it is thickest near the porus opticus, gradually diminishing toward the ora serrata. As the nerve fibers pass through the lamina cribrosa sclerae they lose their medullary sheaths and are continued onward through the choroid and retina as simple axis-cylinders. When they reach the internal surface of the retina they radiate from their point of entrance over this surface grouped in bundles, and in many places arranged in plexuses. Most of the fibers are centripetal, and are the direct continuations of the axis-cylinder processes of the cells of the ganglionic layer, but a few of them are centrifugal and ramify in the inner plexiform and inner nuclear layers, where they end in enlarged extremities." [Wikipedia:Nerve_fiber_layer, ZFA:0001619] comment: This class was created automatically from a combination of ontologies subset: vertebrate_core synonym: "layer of nerve fibers of retina" EXACT [] synonym: "layer of nerve fibres of retina" EXACT [] synonym: "retina nerve fiber layer" EXACT [] synonym: "stratum neurofibrarum (retina)" EXACT [] synonym: "stratum neurofibrarum retinae" EXACT [FMA:58688, FMA:TA] synonym: "stratum opticum of retina" EXACT [] xref: EMAPA:18591 xref: FMA:58688 xref: MA:0001314 xref: OG:0001169 xref: SCTID:280671003 xref: XAO:0003220 xref: ZFA:0001619 is_a: UBERON:0001781 ! layer of retina is_a: UBERON:0003902 ! implied link automatically realized ! retinal neural layer relationship: adjacent_to UBERON:0001794 ! inner limiting layer of retina relationship: overlaps UBERON:0000941 ! cranial nerve II relationship: part_of UBERON:0003902 ! retinal neural layer [Term] id: UBERON:0001794 name: inner limiting layer of retina alt_id: UBERON:FMA_58689-MA_0001313 def: "the row of fused Muller cell processes and astrocytes that separates the retinal nerve fiber layer from the vitreous[MP]." [MP:0010235] comment: TODO - check frog/fish subset: vertebrate_core synonym: "inner limiting membrane" EXACT [XAO:0003222] synonym: "inner limiting membrane of retina" EXACT [] synonym: "internal limiting lamina of retina" EXACT [] synonym: "internal limiting membrane of retina" EXACT [] synonym: "retina inner limiting membrane" EXACT [MP:0010235] synonym: "retina internal limiting lamina" EXACT [] xref: FMA:58689 xref: MA:0001313 xref: ncithesaurus:Inner_Limiting_Membrane xref: SCTID:280677004 xref: XAO:0003222 xref: ZFA:0001029 is_a: UBERON:0007619 ! limiting membrane of retina relationship: adjacent_to UBERON:0001797 ! vitreous humor [Term] id: UBERON:0001795 name: inner plexiform layer of retina alt_id: UBERON:FMA_58704-MA_0001312 def: "The inner plexiform layer (IPL) is positioned between the INL and the ganglion cell layer and contains the dendrites of RGCs and processes of bipolar and amacrine cells[GO]." [Wikipedia:Inner_plexiform_layer] comment: BTO misspelling? subset: vertebrate_core synonym: "inner plexiform layer" RELATED [BTO:0003175] synonym: "IPL" NARROW [] synonym: "retina inner plexiform layer" EXACT [] synonym: "retinal inner plexiform layer" EXACT [] synonym: "stratum plexifome internum" RELATED [BTO:0003175] synonym: "stratum plexiforme internum" EXACT [FMA:58704] xref: BTO:0003175 xref: FMA:58704 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/55/Gray881.png/200px-Gray881.png xref: MA:0001312 xref: ncithesaurus:Inner_Plexiform_Layer xref: NIF_GrossAnatomy:nlx_anat_1005032 xref: OG:0001168 xref: SCTID:280682006 xref: XAO:0003225 xref: ZFA:0001329 is_a: UBERON:0003902 ! implied link automatically realized ! retinal neural layer relationship: adjacent_to UBERON:0001791 relationship: adjacent_to UBERON:0001792 intersection_of: UBERON:0001781 ! layer of retina intersection_of: adjacent_to UBERON:0001791 ! inner nuclear layer of retina intersection_of: adjacent_to UBERON:0001792 ! ganglionic layer of retina relationship: part_of UBERON:0003902 ! retinal neural layer [Term] id: UBERON:0001796 name: aqueous humor of eyeball alt_id: UBERON:FMA_58819-MA_0001236 def: "Body substance in liquid state contained in the anterior and posterior chambers of the eyeball[FMA]. The aqueous humour is a thick watery substance filling the space between the lens and the cornea[WP]." [FMA:58819, Wikipedia:Aqueous_humor] comment: Note that FMA says A+P chambers, and MA states A chamber subset: uberon_slim subset: vertebrate_core synonym: "aqueous humor" EXACT [] synonym: "aqueous humour" EXACT [] synonym: "humor aquosus" EXACT [FMA:58819, FMA:TA] xref: EHDAA:10196 xref: EHDAA2:0000139 xref: EMAPA:18232 xref: ENVO:02000024 xref: FMA:58819 xref: GAID:890 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Schematic_diagram_of_the_human_eye_en.svg/200px-Schematic_diagram_of_the_human_eye_en.svg.png xref: MA:0001236 xref: MESH:A.09.371.060.067.070 xref: ncithesaurus:Aqueous_Humor xref: OG:0000548 xref: OpenCyc:Mx4rvdGd-5wpEbGdrcN5Y29ycA xref: SCTID:280587006 xref: ZFA:0005564 is_a: UBERON:0006312 ! ocular refractive media relationship: part_of UBERON:0001766 ! anterior chamber of eyeball [Term] id: UBERON:0001797 name: vitreous humor alt_id: UBERON:FMA_58822-MA_0001286 def: "Body substance of semisolid state which constitutes the vitreous body of the eye.[FMA]" [FMA:FMA, Wikipedia:Vitreous_humor] comment: Note that FMA distinguishes between a portion and the whole portion. We equate with whole portion here, but this is arbitrary subset: uberon_slim subset: vertebrate_core synonym: "humor vitreous" EXACT [] synonym: "humor vitreus" EXACT [FMA:58822, FMA:TA] synonym: "humoral fluid" RELATED [BTO:0001451] synonym: "ocular fluid" RELATED [BTO:0001451] synonym: "portion of vitreous humor" BROAD [FMA:67388] synonym: "vitreous" EXACT [ZFA:0005561] synonym: "vitreous fluid" RELATED [BTO:0001451] synonym: "vitreous humour" RELATED [] synonym: "whole portion of vitreous humor" EXACT [FMA:58822] xref: BTO:0001451 xref: EMAPA:17837 xref: ENVO:02000032 xref: EV:0100344 xref: FMA:58822 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Schematic_diagram_of_the_human_eye_en.svg/200px-Schematic_diagram_of_the_human_eye_en.svg.png xref: MA:0001286 xref: ncithesaurus:Vitreous_Humor xref: OG:0000795 xref: OpenCyc:Mx4rv7ZIfZwpEbGdrcN5Y29ycA xref: ZFA:0005561 is_a: UBERON:0006312 ! ocular refractive media relationship: part_of UBERON:0001798 ! vitreous body relationship: part_of UBERON:0005606 ! hyaloid cavity [Term] id: UBERON:0001798 name: vitreous body alt_id: UBERON:FMA_58827-MA_0002462 def: "Mucoid tissue in the vitreous chamber of the eyeball. Examples: There are only two instances, right and left vitreous bodies.[FMA]" [FMA:58827, FMA:FMA] comment: Note - in many AOs these are exact synonyms, but FMA has a part of link between portion of vitreous humor and this subset: uberon_slim xref: ENVO:02000032 xref: FMA:58827 xref: GAID:919 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Schematic_diagram_of_the_human_eye_en.svg/200px-Schematic_diagram_of_the_human_eye_en.svg.png xref: MA:0002462 xref: MESH:A.09.371.943 xref: ncithesaurus:Vitreous_Body xref: SCTID:181170006 is_a: UBERON:0002384 ! connective tissue is_a: UBERON:0003566 ! implied link automatically realized ! head connective tissue relationship: part_of UBERON:0001799 ! vitreous chamber of eyeball [Term] id: UBERON:0001799 name: vitreous chamber of eyeball alt_id: UBERON:FMA_58848-MA_0002461 def: "The posterior chamber is a narrow chink behind the peripheral part of the iris of the human eye, and in front of the suspensory ligament of the lens and the ciliary processes the Posterior Chamber consists of small space directly posterior of the Iris but anterior to the lens. [WP,unvetted]." [Wikipedia:Vitreous_chamber] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "camera postrema" EXACT [] synonym: "camera postrema bulbi oculi" EXACT [FMA:58848, FMA:TA] synonym: "camera vitrea" EXACT [] synonym: "camera vitrea bulbi" EXACT [] synonym: "postremal chamber" EXACT [] synonym: "postremal chamber of eyeball" EXACT [] synonym: "vitreous chamber" EXACT [] xref: BTO:0002087 xref: FMA:58848 xref: MA:0002461 xref: ncithesaurus:Vitreous_Chamber is_a: UBERON:0006311 ! chamber of eyeball relationship: part_of UBERON:0001802 ! posterior segment of eyeball [Term] id: UBERON:0001800 name: sensory ganglion alt_id: UBERON:FMA_5885-MA_0002566 def: "the clusters of neurons in the somatic peripheral nervous system which contain the cell bodies of sensory nerve axons, interneurons and non-neuronal supporting cells." [MP:0000960] comment: This class was created automatically from a combination of ontologies synonym: "ganglion sensorium" EXACT [] xref: FMA:5885 xref: MA:0002566 xref: ncithesaurus:Sensory_Ganglion is_a: UBERON:0000045 ! ganglion [Term] id: UBERON:0001801 name: anterior segment of eyeball alt_id: UBERON:FMA_58865-MA_0002484 def: "The anterior segment is the front third of the eye that includes the structures in front of the vitreous humour: the cornea, iris, ciliary body, and lens. Within the anterior segment are two fluid-filled spaces: the anterior chamber between the posterior surface of the cornea (i.e. the corneal endothelium) and the iris; the posterior chamber between the iris and the front face of the vitreous. Aqueous humor fills these spaces within the anterior segment and provides nutrients to the surrounding structures." [Wikipedia:Anterior_segment_of_eyeball] comment: This class was created automatically from a combination of ontologies subset: vertebrate_core synonym: "anterior segment of eye" EXACT [] synonym: "anterior segment of the eye" EXACT [] synonym: "eye anterior segment" EXACT [] synonym: "segmentum anterius (bulbus oculi)" EXACT [] xref: FMA:58865 xref: MA:0002484 xref: MESH:A.09.371.060 xref: ncithesaurus:Anterior_Eye_Segment xref: SCTID:280658001 xref: ZFA:0005566 is_a: UBERON:0000063 ! organ segment relationship: part_of UBERON:0000019 ! camera-type eye [Term] id: UBERON:0001802 name: posterior segment of eyeball alt_id: UBERON:FMA_58868-MA_0002485 def: "The posterior segment is the back two-thirds of the eye that includes the anterior hyaloid membrane and all structures behind it: the vitreous humor, retina, choroid, and optic nerve. On the anterior side of the lens is the aqueous humour which is bounded on all sides by the lens, ciliary body, suspensory ligaments, and by the cornea. It lets light through without refraction, helps maintain the shape of the eye and suspends the delicate lens. In some animals, the retina contains a reflective layer (the tapetum lucidum) which increases the amount of light each photosensitive cell perceives, allowing the animal to see better under low light conditions." [Wikipedia:Posterior_segment_of_eyeball] comment: This class was created automatically from a combination of ontologies subset: vertebrate_core synonym: "eye posterior segment" EXACT [] synonym: "posterior segment of eye" EXACT [] synonym: "posterior segment of the eye" EXACT [] synonym: "segmentum posterius (bulbus oculi)" EXACT [] xref: FMA:58868 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Schematic_diagram_of_the_human_eye_en.svg/200px-Schematic_diagram_of_the_human_eye_en.svg.png xref: MA:0002485 xref: ncithesaurus:Posterior_Eye_Segment xref: SCTID:280659009 xref: ZFA:0005567 is_a: UBERON:0000063 ! organ segment relationship: part_of UBERON:0000019 ! camera-type eye [Term] id: UBERON:0001803 name: epithelium of lens alt_id: UBERON:FMA_58871-MA_0001301-ZFA_0001326 def: "The cells of the lens epithelium regulate most of the homeostatic functions of the lens.[6] As ions, nutrients, and liquid enter the lens from the aqueous humor, Na+/K+ ATPase pumps in the lens epithelial cells pump ions out of the lens to maintain appropriate lens osmolarity and volume, with equatorially positioned lens epithelium cells contributing most to this current. The activity of the Na+/K+ ATPases keeps water and current flowing through the lens from the poles and exiting through the equatorial regions." [Wikipedia:Lens_(anatomy)#Lens_Epithelium] comment: This class was created automatically from a combination of ontologies subset: vertebrate_core synonym: "epithelial tissue of eye lens" EXACT [OBOL:automatic] synonym: "epithelial tissue of lens" EXACT [OBOL:automatic] synonym: "epithelium lentis" EXACT [FMA:58871, FMA:TA] synonym: "epithelium of eye lens" EXACT [OBOL:automatic] synonym: "eye lens epithelial tissue" EXACT [OBOL:automatic] synonym: "eye lens epithelium" EXACT [OBOL:automatic] synonym: "lens epithelial tissue" EXACT [OBOL:automatic] synonym: "lens epithelium" EXACT [] xref: BTO:0001873 xref: FMA:58871 xref: MA:0001301 xref: SCTID:362523006 xref: TAO:0001326 xref: XAO:0004094 xref: ZFA:0001326 is_a: UBERON:0000484 ! simple cuboidal epithelium is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0007625 ! implied link automatically realized ! pigment epithelium of eye relationship: part_of UBERON:0000965 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000965 ! lens relationship: part_of UBERON:0000965 ! lens [Term] id: UBERON:0001804 name: capsule of lens alt_id: UBERON:FMA_58881-MA_0001300 def: "a smooth, transparent basement membrane that completely surrounds the lens. It is synthesized by the lens epithelium and its main components are Type IV collagen and sulfated glycosaminoglycans (GAGs)." [Wikipedia:Lens_(anatomy)#Lens_capsule, Wikipedia:Lens_capsule] subset: uberon_slim subset: vertebrate_core synonym: "lens capsule" EXACT [] xref: EHDAA2:0000977 xref: EMAPA:18237 xref: FMA:58881 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/55/Gray883.png/200px-Gray883.png xref: MA:0001300 xref: ncithesaurus:Lens_Capsule xref: OG:0000550 xref: SCTID:244500004 xref: ZFA:0005574 is_a: UBERON:0000476 {source="EHDAA2"} ! acellular anatomical structure is_a: UBERON:0003893 ! capsule is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0005769 {source="Wikipedia"} ! basement membrane relationship: surrounds UBERON:0000965 intersection_of: UBERON:0003893 ! capsule intersection_of: surrounds UBERON:0000965 ! lens relationship: develops_from UBERON:0001803 {source="Wikipedia"} ! epithelium of lens relationship: develops_from UBERON:0005614 {source="EHDAA2"} ! lens anterior epithelium relationship: surrounds UBERON:0000965 ! lens [Term] id: UBERON:0001805 name: autonomic ganglion alt_id: UBERON:FMA_5889-MA_0000220 def: "ganglion that has dendrites that form a junction between autonomic nerves originating from the central nervous system and autonomic nerves innervating their target organs in the periphery. There are two subtypes, sympathetic ganglion and parasympathetic ganglion." [Wikipedia:Autonomic_ganglion] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "autonomic nervous system ganglion" EXACT [OBOL:automatic] synonym: "ganglion of autonomic nervous system" EXACT [OBOL:automatic] synonym: "ganglion of visceral nervous system" EXACT [OBOL:automatic] synonym: "visceral nervous system ganglion" EXACT [OBOL:automatic] xref: EMAPA:17157 xref: EMAPA:18221 xref: FMA:5889 xref: MA:0000220 xref: ncithesaurus:Autonomic_Ganglion is_a: UBERON:0000045 ! ganglion is_a: UBERON:0003338 ! implied link automatically realized ! ganglion of peripheral nervous system relationship: part_of UBERON:0002410 intersection_of: UBERON:0000045 ! ganglion intersection_of: part_of UBERON:0002410 ! autonomic nervous system relationship: part_of UBERON:0002410 ! autonomic nervous system [Term] id: UBERON:0001806 name: sympathetic ganglion alt_id: UBERON:FMA_5890-MA_0000226 def: "Sympathetic ganglia are the ganglia of the sympathetic nervous system. They deliver information to the body about stress and impending danger, and are responsible for the familiar fight-or-flight response. They contain approximately 20000–30000 nerve cell bodies and are located close to and on either side of the spinal cord in long chains. [WP,unvetted]." [Wikipedia:Sympathetic_ganglion] subset: uberon_slim synonym: "ganglion of sympathetic nervous system" EXACT [OBOL:automatic] synonym: "ganglion of sympathetic part of autonomic division of nervous system" EXACT [OBOL:automatic] synonym: "ganglion sympatheticum" EXACT [] synonym: "ganglion sympathicum" RELATED [BTO:0001333] synonym: "sympathetic nervous system ganglion" EXACT [OBOL:automatic] synonym: "sympathetic part of autonomic division of nervous system ganglion" EXACT [OBOL:automatic] xref: AAO:0010773 xref: BTO:0001333 xref: EHDAA2:0001969 xref: EMAPA:17157 xref: FMA:5890 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f7/Gray839.png/200px-Gray839.png xref: MA:0000226 xref: ncithesaurus:Sympathetic_Ganglion xref: SCTID:362485003 is_a: UBERON:0001805 ! autonomic ganglion relationship: part_of UBERON:0000013 intersection_of: UBERON:0000045 ! ganglion intersection_of: part_of UBERON:0000013 ! sympathetic nervous system relationship: develops_from UBERON:0002342 {source="ISBN10:0073040584"} ! neural crest [Term] id: UBERON:0001807 name: paravertebral ganglion alt_id: UBERON:FMA_5891-ZFA_0001556 def: "Trunk ganglion which is part of a bilaterally paired set of sympathetic ganglia located anterior and lateral to the spinal cord." [Wikipedia:Paravertebral_ganglion, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "ganglion of sympathetic trunk" EXACT [] synonym: "ganglion trunci sympathetici" EXACT [] synonym: "ganglion trunci sympathici" EXACT [FMA:5891, FMA:TA] synonym: "sympathetic chain ganglion" EXACT [] xref: FMA:5891 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2d/Gray847.png/200px-Gray847.png xref: TAO:0001556 xref: ZFA:0001556 is_a: UBERON:0001806 ! implied link automatically realized ! sympathetic ganglion is_a: UBERON:0007134 {source="ZFA"} ! trunk ganglion relationship: part_of UBERON:0000013 {source="ZFA"} ! sympathetic nervous system [Term] id: UBERON:0001808 name: parasympathetic ganglion alt_id: UBERON:FMA_5894-MA_0002469 def: "Parasympathetic ganglia are the autonomic ganglia of the parasympathetic nervous system. Most are small terminal ganglia or intramural ganglia, so named because they lie near or within (respectively) the organs they innervate. The exceptions are the four paired parasympathetic ganglia of the head and neck. [WP,unvetted]." [Wikipedia:Parasympathetic_ganglion] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "ganglion parasympathicum" RELATED [BTO:0001256] xref: BTO:0001256 xref: EHDAA2:0001400 xref: FMA:5894 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f7/Gray839.png/200px-Gray839.png xref: MA:0002469 xref: ncithesaurus:Parasympathetic_Ganglion xref: NIF_GrossAnatomy:nlx_anat_100303 xref: SCTID:279284004 is_a: UBERON:0001805 ! implied link automatically realized ! autonomic ganglion relationship: part_of UBERON:0000011 intersection_of: UBERON:0001805 ! autonomic ganglion intersection_of: part_of UBERON:0000011 ! parasympathetic nervous system relationship: develops_from UBERON:0002342 {source="ISBN10:0073040584"} ! neural crest [Term] id: UBERON:0001809 name: enteric ganglion alt_id: UBERON:FMA_5896-MA_0001144 comment: This class was created automatically from a combination of ontologies synonym: "intramural ganglion" EXACT [] xref: FMA:5896 xref: MA:0001144 xref: ncithesaurus:Enteric_Ganglion is_a: UBERON:0001808 ! parasympathetic ganglion relationship: part_of UBERON:0002005 ! enteric nervous system [Term] id: UBERON:0001810 name: nerve plexus alt_id: UBERON:FMA_5901-MA_0002407 def: "Anatomical junction where subdivisions of two or more neural trees interconnect with one another to form a network through which nerve fibers of the constituent nerve trees become regrouped; together with other nerve plexuses, nerves and ganglia, it constitutes the peripheral nervous system. Examples: cervical nerve plexus, brachial nerve plexus, sacral nerve plexus[FMA]." [FMA:5901, Wikipedia:Nerve_plexus] comment: in FMA this is a subtype of junction rather than tissue subset: uberon_slim xref: AEO:0000138 xref: BTO:0000205 xref: EHDAA:3780 xref: EHDAA2:0003138 xref: EMAPA:16987 xref: EMAPA:18224 xref: FMA:5901 xref: MA:0002407 xref: ncithesaurus:Nerve_Plexus xref: SCTID:122455009 is_a: UBERON:0003714 ! neural tissue relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0001811 name: conjunctiva alt_id: UBERON:FMA_59011-XAO_0000182 def: "The conjunctiva is a clear mucous membrane consisting of cells and underlying basement membrane that covers the sclera (white part of the eye) and lines the inside of the eyelids. It is made of epithelial tissue. [WP,unvetted]." [Wikipedia:Conjunctiva] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "wall of conjunctival sac" EXACT [] xref: AAO:0010343 xref: BTO:0003415 xref: EFO:0000374 xref: EV:0100340 xref: FMA:59011 xref: GAID:898 xref: HAO:0000221 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/55/Gray883.png/200px-Gray883.png xref: MA:0000265 xref: MESH:A.09.371.192 xref: ncithesaurus:Conjunctiva xref: SCTID:181161008 xref: XAO:0000182 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0000019 ! camera-type eye relationship: part_of UBERON:0001801 ! anterior segment of eyeball [Term] id: UBERON:0001812 name: palpebral conjunctiva alt_id: UBERON:FMA_59025-MA_0001265 comment: This class was created automatically from a combination of ontologies synonym: "tunica conjunctiva palpebrum" EXACT [] xref: FMA:59025 xref: MA:0001265 xref: ncithesaurus:Palpebral_Conjunctiva xref: SCTID:280666005 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001711 ! eyelid [Term] id: UBERON:0001813 name: somatic nerve plexus alt_id: UBERON:FMA_5903-MA_0000235 def: "A nerve plexus that is part of a somatic nervous system [Obol]." [OBOL:automatic] comment: TODO - check synonym: "plexus nervorum spinalium" EXACT [FMA:5903, FMA:TA] synonym: "plexus of spinal nerves" EXACT [FMA:5903] synonym: "spinal nerve plexus" EXACT [FMA:5903] xref: EHDAA2:0001899 xref: EMAPA:16987 xref: FMA:5903 xref: MA:0000235 xref: ncithesaurus:Spinal_Nerve_Plexus xref: OG:0000925 xref: SCTID:42280003 is_a: UBERON:0001810 ! implied link automatically realized ! nerve plexus relationship: part_of UBERON:0000012 intersection_of: UBERON:0001810 ! nerve plexus intersection_of: part_of UBERON:0000012 ! somatic nervous system [Term] id: UBERON:0001814 name: brachial nerve plexus alt_id: UBERON:FMA_5906-MA_0001180 def: "The brachial plexus is an arrangement of nerve fibers, running from the spine, formed by the ventral rami of the lower cervical and upper thoracic nerve root, specifically from below the fifth cervical vertebra to above the first thoracic vertebra. It proceeds through the neck, the axilla (armpit region) and into the arm. [WP,unvetted]." [Wikipedia:Brachial_plexus] comment: check superclass - nerve vs collection of fibers vs junction; note that FMA also has 'brachial autonomic nerve plexus' subset: uberon_slim synonym: "brachial plexus" EXACT [] synonym: "plexus brachialis" RELATED [Wikipedia:Brachial_plexus] xref: EHDAA:3782 xref: EHDAA2:0000180 xref: EMAPA:16988 xref: FMA:5906 xref: GAID:842 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3a/Gray808.png/200px-Gray808.png xref: MA:0001180 xref: MESH:A.08.800.800.720.050 xref: ncithesaurus:Brachial_Plexus xref: OG:0000372 xref: OpenCyc:Mx4rwNWmO5wpEbGdrcN5Y29ycA xref: SCTID:181002002 is_a: UBERON:0001021 ! nerve is_a: UBERON:0001813 {source="MA"} ! somatic nerve plexus is_a: UBERON:0003441 ! implied link automatically realized ! forelimb nerve relationship: part_of UBERON:0002102 ! forelimb [Term] id: UBERON:0001815 name: lumbosacral nerve plexus alt_id: UBERON:FMA_5907-MA_0001181 def: "The anterior divisions of the lumbar nerve, sacral nerve, and coccygeal nerves form the lumbosacral plexus, the first lumbar nerve being frequently joined by a branch from the twelfth thoracic. For descriptive purposes this plexus is usually divided into three parts: lumbar plexus sacral plexus pudendal plexus [WP,unvetted]." [Wikipedia:Lumbosacral_plexus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "lumbosacral plexus" EXACT [] synonym: "plexus lumbosacralis" EXACT [FMA:5907, FMA:TA] xref: EHDAA:4673 xref: EHDAA2:0001040 xref: EMAPA:17587 xref: FMA:5907 xref: GAID:849 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8d/Gray822.png/200px-Gray822.png xref: MA:0001181 xref: MESH:A.08.800.800.720.450 xref: ncithesaurus:Lumbosacral_Plexus xref: OG:0000926 xref: OpenCyc:Mx4rvzYo75wpEbGdrcN5Y29ycA xref: SCTID:181049003 is_a: UBERON:0001813 ! somatic nerve plexus [Term] id: UBERON:0001816 name: autonomic nerve plexus alt_id: UBERON:FMA_5910-MA_0000221 def: "A nerve plexus that is part of an autonomic nervous system [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "autonomic plexus" EXACT [] synonym: "plexus autonomicus" EXACT [FMA:5910, FMA:TA] synonym: "plexus nervosus visceralis" EXACT [FMA:5910, FMA:TA] synonym: "plexus visceralis" EXACT [FMA:5910, FMA:TA] synonym: "visceral nerve plexus" EXACT [] synonym: "visceral plexus" EXACT [] xref: EMAPA:18224 xref: FMA:5910 xref: MA:0000221 xref: SCTID:362482000 is_a: UBERON:0001810 ! implied link automatically realized ! nerve plexus relationship: part_of UBERON:0002410 intersection_of: UBERON:0001810 ! nerve plexus intersection_of: part_of UBERON:0002410 ! autonomic nervous system [Term] id: UBERON:0001817 name: lacrimal gland alt_id: UBERON:FMA_59101-MA_0001296 def: "Lobular organ the parenchyma of which consists of glandular acini which communicate the lacrimal sac. Examples: There only two instances, right lacrimal and left lacrimal glands[FMA]. The lacrimal glands are paired almond-shaped glands, one for each eye, that secrete the aqueous layer of the tear film. They are situated in the upper, outer portion of each orbit. Inflammation of the lacrimal glands is called dacryoadenitis[WP]." [Wikipedia:Lacrimal_gland] comment: This class was created automatically from a combination of ontologies subset: organ_slim subset: uberon_slim xref: BTO:0000044 xref: EFO:0001389 xref: EV:0100339 xref: FMA:59101 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cf/Gray896.png/200px-Gray896.png xref: MA:0001296 xref: ncithesaurus:Lacrimal_Gland xref: OG:0001476 xref: SCTID:181147003 is_a: UBERON:0002365 ! implied link automatically realized ! exocrine gland is_a: UBERON:0002530 ! gland is_a: UBERON:0004859 ! implied link automatically realized ! eye gland relationship: part_of UBERON:0001750 ! lacrimal apparatus relationship: part_of UBERON:0002330 ! exocrine system [Term] id: UBERON:0001818 name: tarsal gland alt_id: UBERON:FMA_59104-MA_0001249 def: "The meibomian glands (or tarsal glands) are a special kind of sebaceous glands at the rim of the eyelids, responsible for the supply of sebum, an oily substance that prevents evaporation of the eye's tear film, prevents tear spillage onto the cheek, and makes the closed lids airtight. There are approximately 50 glands on the upper eyelids and 25 glands on the lower eyelids. The glands are named after Heinrich Meibom (1638-1700), a German physician. [WP,unvetted]." [Wikipedia:Tarsal_gland] comment: This class was created automatically from a combination of ontologies subset: organ_slim subset: uberon_slim synonym: "gland of meibom" EXACT [] synonym: "meibomian gland" EXACT [] synonym: "palpebral gland" RELATED [] xref: BTO:0004165 xref: FMA:59104 xref: GAID:899 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Gray1205.png/200px-Gray1205.png xref: MA:0001249 xref: MESH:A.09.371.337.614 xref: ncithesaurus:Meibomian_Gland xref: SCTID:280585003 is_a: UBERON:0001821 ! sebaceous gland relationship: part_of UBERON:0004772 ! eyelid tarsus [Term] id: UBERON:0001819 name: palpebral fissure alt_id: UBERON:FMA_59110-MA_0001266 def: "Palpebral fissure is the anatomic name for the separation between the upper and lower eyelids. In the adult this measures about 10mm vertically and 30 mm horizontally. It can be reduced in size in fetal alcohol syndrome. In Trisomy 9 the palpebral fissures can be upslanting. [WP,unvetted]." [Wikipedia:Palpebral_fissure] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:59110 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a9/Gray892.png/200px-Gray892.png xref: MA:0001266 xref: SCTID:280576003 is_a: UBERON:0000161 ! orifice relationship: part_of UBERON:0001711 ! eyelid [Term] id: UBERON:0001820 name: sweat gland alt_id: UBERON:FMA_59152-MA_0000150 def: "Sweat glands are exocrine glands, found in the skin of all mammal species, that are used for body temperature regulation. In humans a system of apocrine - and merocrine sweat glands is the main method of cooling. Many other mammals rely on panting or other means as a primary source of cooling, but still use sweat glands to aid in body temperature regulation. Sweat also serves a purpose of increasing friction on the palms of hands or the pads of paws. Both apocrine and merocrine sweat glands contain myoepithelial cells (from Greek myo-, 'muscle'), specialized epithelial cells located between the gland cells and the underlying basal lamina. Myoepithelial cell contractions squeeze the gland and discharge the accumulated secretions. The secretory activities of the gland cells and the contractions of myoepithelial cells are controlled by both the autonomic nervous system and by the circulating hormones. Additionally, ceruminous glands, which produce ear wax, and mammary glands, which produce milk, are frequently considered to be modified sweat glands. [WP,unvetted]." [Wikipedia:Sweat_gland] comment: todo - check if all sweat glands are epidermal - see EMAPA:29743 subset: organ_slim subset: uberon_slim synonym: "glandula sudorifera" RELATED [BTO:0001331] synonym: "sudoriferous gland" RELATED [BTO:0001331] synonym: "sudoriparous gland" RELATED [BTO:0001331] xref: BTO:0001331 xref: EV:0100160 xref: FMA:59152 xref: GAID:943 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6d/Skin.svg/200px-Skin.svg.png xref: MA:0000150 xref: MESH:A.10.336.899 xref: ncithesaurus:Sweat_Gland xref: OG:0001467 xref: OpenCyc:Mx4rvVjx15wpEbGdrcN5Y29ycA xref: SCTID:361700009 is_a: UBERON:0002365 {source="MA"} ! exocrine gland is_a: UBERON:0007771 ! implied link automatically realized ! epidermis gland relationship: secretes UBERON:0001089 intersection_of: UBERON:0002530 ! gland intersection_of: secretes UBERON:0001089 ! sweat relationship: part_of UBERON:0001003 {source="FMA"} ! epidermis [Term] id: UBERON:0001821 name: sebaceous gland alt_id: UBERON:FMA_59160-MA_0002565 def: "The sebaceous glands are microscopic glands in the skin which secrete an oily/waxy matter, called sebum, to lubricate the skin and hair of animals. [WP,unvetted]." [Wikipedia:Sebaceous_gland] comment: This class was created automatically from a combination of ontologies subset: organ_slim subset: uberon_slim synonym: "glandula sebaceae" RELATED [BTO:0001980] synonym: "sebaceous follicle" RELATED [BTO:0001980] xref: BTO:0001980 xref: EV:0100161 xref: FMA:59160 xref: GAID:900 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/49/HairFollicle.png/200px-HairFollicle.png xref: MA:0002565 xref: MESH:A.10.336.827 xref: ncithesaurus:Sebaceous_Gland xref: OG:0001468 xref: SCTID:361697005 is_a: UBERON:0002365 ! implied link automatically realized ! exocrine gland is_a: UBERON:0002530 ! gland relationship: part_of UBERON:0002330 ! exocrine system [Term] id: UBERON:0001822 name: orbital septum alt_id: UBERON:FMA_59328-MA_0001259 def: "a membranous sheet that acts as the anterior boundary of the orbit. It extends from the orbital rims to the eyelids[WP]." [Wikipedia:Orbital_septum] comment: This class was created automatically from a combination of ontologies subset: organ_slim subset: uberon_slim xref: FMA:59328 xref: MA:0001259 xref: SCTID:368859002 is_a: UBERON:0000094 ! membrane organ is_a: UBERON:0003037 ! septum is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0002204 ! musculoskeletal system relationship: part_of UBERON:0004772 ! eyelid tarsus relationship: surrounds UBERON:0001697 ! orbit [Term] id: UBERON:0001823 name: nasal cartilage alt_id: UBERON:FMA_59502-MA_0001883 def: "One of the cartilage structures in the nose that provide form and support[WP]." [Wikipedia:Nasal_cartilage] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "cartilage of nose" EXACT [] xref: FMA:59502 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e1/Gray852.png/200px-Gray852.png xref: MA:0001883 xref: ncithesaurus:Nasal_Cartilage xref: SCTID:278941001 is_a: UBERON:0002418 {source="MA"} ! cartilage tissue is_a: UBERON:0003406 ! implied link automatically realized ! cartilage of respiratory system is_a: UBERON:0003566 ! implied link automatically realized ! head connective tissue is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0000004 intersection_of: UBERON:0002418 ! cartilage tissue intersection_of: part_of UBERON:0000004 ! olfactory apparatus relationship: encloses UBERON:0000402 ! nasal vestibule [Term] id: UBERON:0001824 name: mucosa of larynx alt_id: UBERON:FMA_59662-MA_0001766 def: "the mucous lining of the larynx, which is composed of squamous epithelium in the upper larynx and ciliated columnar epithelium in the lower larynx." [MP:0002261] comment: This class was created automatically from a combination of ontologies synonym: "laryngeal mucosa" EXACT [] synonym: "larynx mucosa" EXACT [] synonym: "larynx mucosa of organ" EXACT [OBOL:automatic] synonym: "larynx mucous membrane" EXACT [OBOL:automatic] synonym: "larynx organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of organ of larynx" EXACT [OBOL:automatic] synonym: "mucous membrane of larynx" EXACT [] synonym: "organ mucosa of larynx" EXACT [OBOL:automatic] synonym: "tunica mucosa laryngis" EXACT [FMA:59662, FMA:TA] xref: EMAPA:18334 xref: FMA:59662 xref: GAID:301 xref: MA:0001766 xref: MESH:A.04.329.597 xref: ncithesaurus:Laryngeal_Mucosa xref: SCTID:361940006 is_a: UBERON:0000064 ! organ part is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004785 ! implied link automatically realized ! respiratory system mucosa relationship: part_of UBERON:0001737 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001737 ! larynx relationship: part_of UBERON:0001737 ! larynx [Term] id: UBERON:0001825 name: paranasal sinus alt_id: UBERON:FMA_59679-MA_0000431 def: "Paranasal sinuses are air-filled spaces, communicating with the nasal cavity, within the bones of the skull and face. [WP,unvetted]." [Wikipedia:Paranasal_sinus] comment: Arise as epithelial lined diverticula of the lining of the nasal cavity. The extent of sinus development varies with species, most of the development occurs postnatally subset: uberon_slim synonym: "nasal sinus" RELATED [GAID:355] synonym: "sinus" BROAD [] xref: EHDAA:6489 xref: EMAPA:18633 xref: EV:0100038 xref: FMA:59679 xref: GAID:355 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fb/Nnh_front.svg/200px-Nnh_front.svg.png xref: MA:0000431 xref: MESH:A.04.531.621 xref: ncithesaurus:Paranasal_Sinus xref: SCTID:181203001 is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0000033 ! head relationship: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0001826 name: nasal cavity mucosa alt_id: UBERON:FMA_59684-MA_0001324 def: "the mucous membrane that lines the nasal cavity[MP]." [MP:0002238] comment: TODO - check lining vs part of. split olfactory and nasal mucosa? synonym: "mucosa of nose" EXACT [FMA:59684] synonym: "mucous membrane of nose" EXACT [FMA:59684] synonym: "nasal mucosa" RELATED [] synonym: "tunica mucosa nasi" EXACT [FMA:59684, FMA:TA] xref: BTO:0000912 xref: FMA:59684 xref: GAID:302 xref: SCTID:310211009 is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0004785 ! implied link automatically realized ! respiratory system mucosa relationship: part_of UBERON:0001707 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001707 ! nasal cavity [Term] id: UBERON:0001827 name: tear alt_id: UBERON:FMA_59756-MA_0002508 def: "Secretion produced by the lacrimal gland.[FMA]" [FMA:FMA, Wikipedia:Tear] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: BTO:0001499 xref: ENVO:02000034 xref: FMA:59756 xref: GAID:1173 xref: galen:Tear xref: galen:Tears xref: MA:0002508 xref: MESH:A.12.200.882 xref: ncithesaurus:Tear is_a: UBERON:0000456 ! secretion [Term] id: UBERON:0001828 name: gingiva alt_id: UBERON:FMA_59762-MA_0000342 def: "The gingiva, or gums, consists of the mucosal tissue that lies over the alveolar bone. [WP,unvetted]." [Wikipedia:Gingiva] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "gum" EXACT [FMA:59762] synonym: "gum tissue" EXACT [UBERON:cjm] xref: BTO:0000519 xref: EFO:0001925 xref: EMAPA:18967 xref: EMAPA:18970 xref: EV:0100064 xref: FMA:59762 xref: GAID:1257 xref: galen:Gingiva xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2e/Tooth_Section.svg/200px-Tooth_Section.svg.png xref: MA:0000342 xref: MESH:A.14.254.646.480 xref: ncithesaurus:Gingiva xref: OG:0001269 xref: OpenCyc:Mx4rvViWnZwpEbGdrcN5Y29ycA xref: SCTID:181224006 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0000166 ! oral opening [Term] id: UBERON:0001829 name: major salivary gland alt_id: UBERON:FMA_59788-MA_0002478 def: "the three largest glands of the oral cavity that secrete most of the saliva, including the parotid, submandibular, and sublingual glands." [MP:0003792] comment: This class was created automatically from a combination of ontologies subset: organ_slim xref: FMA:59788 xref: galen:MajorSalivaryGland xref: MA:0002478 xref: ncithesaurus:Major_Salivary_Gland xref: SCTID:303049006 is_a: UBERON:0001044 ! salivary gland is_a: UBERON:0002365 ! implied link automatically realized ! exocrine gland relationship: part_of UBERON:0002330 ! exocrine system [Term] id: UBERON:0001830 name: minor salivary gland alt_id: UBERON:FMA_59789-MA_0002479 def: "the smaller, largely mucus-secreting, exocrine glands of the oral cavity, consisting of the labial, buccal, molar, lingual, and palatine glands[MP]. There are over 600 minor salivary glands located throughout the oral cavity within the lamina propria of the oral mucosa. They are 1-2mm in diameter and unlike the other glands, they are not encapsulated by connective tissue only surrounded by it. The gland is usually a number of acini connected in a tiny lobule. A minor salivary gland may have a common excretory duct with another gland, or may have its own excretory duct. Their secretion is mainly mucous in nature (except for Von Ebner's glands) and have many functions such as coating the oral cavity with saliva. Problems with dentures are usually associated with minor salivary glands[WP]." [MP:0003791, Wikipedia:Salivary_gland#Minor_Salivary_Glands] subset: organ_slim xref: FMA:59789 xref: GAID:940 xref: galen:MinorSalivaryGland xref: MA:0002479 xref: MESH:A.10.336.779.650 xref: ncithesaurus:Minor_Salivary_Gland xref: SCTID:362177001 is_a: UBERON:0001044 ! salivary gland is_a: UBERON:0002365 ! implied link automatically realized ! exocrine gland relationship: part_of UBERON:0002330 ! exocrine system relationship: part_of UBERON:0005334 ! oral lamina propria [Term] id: UBERON:0001831 name: parotid gland alt_id: UBERON:FMA_59790-MA_0001585 def: "The parotid gland is the largest of the salivary glands. It is found wrapped around the mandibular ramus, and it secretes saliva through Stensen's duct into the oral cavity, to facilitate mastication and swallowing. [WP,unvetted]." [Wikipedia:Parotid_gland] subset: uberon_slim synonym: "parotid" EXACT [] xref: AAO:0010095 xref: BTO:0001004 xref: EFO:0002558 xref: EMAPA:18537 xref: EV:0100060 xref: FMA:59790 xref: GAID:938 xref: galen:ParotidGland xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/51/Illu_quiz_hn_02.jpg/200px-Illu_quiz_hn_02.jpg xref: MA:0001585 xref: MESH:A.10.336.779.464 xref: ncithesaurus:Parotid_Gland xref: OG:0000308 xref: OpenCyc:Mx4rvqwyg5wpEbGdrcN5Y29ycA xref: SCTID:181234002 is_a: UBERON:0001829 ! major salivary gland relationship: develops_from UBERON:0008801 ! parotid gland primordium relationship: part_of UBERON:0001567 ! cheek [Term] id: UBERON:0001832 name: sublingual gland alt_id: UBERON:FMA_59791-MA_0001588 def: "The sublingual glands are salivary glands in the mouth. They lie anterior to the submandibular gland under the tongue, beneath the mucous membrane of the floor of the mouth. They are drained by 8-20 excretory ducts called the ducts of Rivinus. The largest duct, the sublingual duct (of Bartholin) joins the submandibular duct to drain through the sublingual caruncle. The sublingual gland consists mostly of Mucous acini capped with serous demilunes and is therefore categorized as a mixed gland. Most of the remaining small sublingual ducts open separately into the mouth on an elevated crest of mucous membrane, the sublingual fold, caused by the gland and on either side of the frenulum linguae. The chorda tympani nerve is secretomotor to the sublingual glands. [WP,unvetted]." [Wikipedia:Sublingual_gland] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "ductus sublingualis" EXACT [] synonym: "Rivinus gland" RELATED [BTO:0001315] synonym: "Rivinus' gland" EXACT [] synonym: "submaxillary gland" RELATED [MA:0001589] xref: BTO:0001315 xref: EMAPA:18809 xref: EV:0100062 xref: FMA:59791 xref: GAID:941 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Gray1024.png/200px-Gray1024.png xref: MA:0001588 xref: MESH:A.10.336.779.687 xref: OG:0000363 xref: SCTID:362176005 is_a: UBERON:0001829 {source="FMA"} ! major salivary gland relationship: develops_from UBERON:0006297 ! sublingual gland primordium [Term] id: UBERON:0001833 name: lip alt_id: UBERON:FMA_59816-ZFA_0007006 def: "One of the two fleshy folds which surround the opening of the mouth. http://www.medterms.com/script/main/art.asp?articlekey=9458" [Wikipedia:Lip, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "lips" RELATED [] xref: BTO:0001647 xref: FMA:59816 xref: GAID:76 xref: galen:Lip xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/99/Mouth.jpg/200px-Mouth.jpg xref: MA:0000343 xref: MESH:A.01.456.505.631.515 xref: ncithesaurus:Lip xref: OG:0000677 xref: OpenCyc:Mx4rvVi4U5wpEbGdrcN5Y29ycA xref: SCTID:181221003 xref: TAO:0007006 xref: ZFA:0007006 is_a: UBERON:0003102 ! surface structure is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0000165 ! mouth relationship: surrounds UBERON:0000166 ! oral opening [Term] id: UBERON:0001834 name: upper lip alt_id: UBERON:FMA_59817-MA_0000919 def: "The upper lip covers the anterior surface of the body of the maxilla. Its upper half is of usual skin color and has a depression at its centre, directly under the nasal septum, called the philtrum, while its lower half is a markedly different, red-colored skin tone more similar to the colour of the inside of the mouth, and the term vermillion refers to the colored portion of either the upper or lower lip. It is raised by the Levator labii superioris and is connected to the lower lip by the thin lining of the lip itself, which can be seen by opening your mouth wide in front of a mirror. Thinning of the vermilion of the upper lip and flattening of the philtrum are two of the facial characteristics of Fetal alcohol syndrome, a life-long disability caused by the consumption of alcohol during pregnancy. [WP,unvetted]." [Wikipedia:Upper_lip] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core xref: FMA:59817 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d4/Illu01_head_neck.jpg/200px-Illu01_head_neck.jpg xref: MA:0000919 xref: OpenCyc:Mx4rvWPv7pwpEbGdrcN5Y29ycA xref: SCTID:245776003 xref: ZFA:0005226 is_a: UBERON:0001833 ! lip relationship: develops_from UBERON:0004068 ! medial nasal prominence relationship: develops_from UBERON:0005868 ! maxillary prominence [Term] id: UBERON:0001835 name: lower lip alt_id: UBERON:FMA_59818-MA_0000921 def: "The lower lip (also called underlip) covers the anterior body of the mandible. It is lowered by the Depressor labii inferioris muscle. [WP,unvetted]." [Wikipedia:Lower_lip] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core xref: FMA:59818 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/99/Mouth.jpg/200px-Mouth.jpg xref: MA:0000921 xref: OpenCyc:Mx4rv842UpwpEbGdrcN5Y29ycA xref: SCTID:245777007 xref: ZFA:0005225 is_a: UBERON:0001833 ! lip relationship: develops_from UBERON:0005867 ! mandibular prominence [Term] id: UBERON:0001836 name: saliva alt_id: UBERON:FMA_59862-MA_0002507 def: "In humans, the saliva is a turbid and slightly viscous fluid, generally of an alkaline reaction, and is secreted by the parotid, submaxillary, and sublingual glands. In the mouth the saliva is mixed with the secretion from the buccal glands. In man and many animals, saliva is an important digestive fluid on account of the presence of the peculiar enzyme, ptyalin[GO]." [GO:0046541, Wikipedia:Saliva] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "salivary gland secretion" EXACT [FMA:59862] xref: BTO:0001202 xref: ENVO:02000036 xref: FMA:59862 xref: GAID:1167 xref: galen:Saliva xref: MA:0002507 xref: MAT:0000444 xref: MESH:A.12.200.666 xref: ncithesaurus:Saliva xref: OpenCyc:Mx4rvVjJ95wpEbGdrcN5Y29ycA is_a: UBERON:0000456 ! secretion [Term] id: UBERON:0001837 name: duct of salivary gland alt_id: UBERON:FMA_59908-MA_0001586 def: "An intralobular duct found in salivary glands and involved in the production and transport of their secretions[BTO]." [BTO:0005115, Wikipedia:Salivary_duct] comment: check taxonomy coverage - define functionally? subset: uberon_slim synonym: "salivary duct" EXACT [] synonym: "salivary gland duct" EXACT [] synonym: "secretory duct" RELATED [BTO:0005115] xref: BTO:0005115 xref: FMA:59908 xref: GAID:939 xref: MA:0001586 xref: MESH:A.10.336.779.640 xref: SCTID:181238004 is_a: UBERON:0000058 ! duct is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0003928 ! implied link automatically realized ! digestive system duct relationship: part_of UBERON:0001044 ! salivary gland [Term] id: UBERON:0001838 name: sublingual duct alt_id: UBERON:FMA_59983-MA_0002699 def: "The excretory ducts of the sublingual gland are from eight to twenty in number. Of the smaller sublingual ducts (ducts of Rivinus), some join the submandibular duct; others open separately into the mouth, on the elevated crest of mucous membrane (plica sublingualis), caused by the projection of the gland, on either side of the frenulum linguae. One or more join to form the major sublingual duct (larger sublingual duct, duct of Bartholin), which opens into the submandibular duct. [WP,unvetted]." [Wikipedia:Sublingual_duct] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: BTO:0004558 xref: FMA:59983 xref: MA:0002699 xref: SCTID:281000009 is_a: UBERON:0001837 ! duct of salivary gland relationship: part_of UBERON:0001832 ! sublingual gland [Term] id: UBERON:0001839 name: bony labyrinth alt_id: UBERON:FMA_60179-MA_0000238-XAO_0000193 def: "A system of fluid passages in the inner ear, including both the cochlea, which is part of the auditory system, and the vestibular system, which provides the sense of balance. The bony labyrinth, or osseous labyrinth, is the network of passages with bony walls lined with periosteum. The bony labyrinth is lined with the membranous labyrinth. There is a layer of perilymph between them. The three parts of the bony labyrinth are the vestibule of the ear, the semicircular canals, and the cochlea. The vestibular system is the region of the inner ear where the semicircular canals converge, close to the cochlea (the hearing organ). The vestibular system works with the visual system to keep objects in focus when the head is moving. Joint and muscle receptors also are important in maintaining balance. The brain receives, interprets, and processes the information from these systems that control our balance. [WP,unvetted]." [Wikipedia:Bony_labyrinth] comment: Ideally we would place a spatially disjoint from relationship to membranous labyrinth, but there are many parts in common. this should be resolved. subset: uberon_slim synonym: "osseous labyrinth" EXACT [] synonym: "osseus labyrinth" RELATED [] xref: AAO:0011078 xref: BTO:0004685 xref: EV:0100362 xref: FMA:60179 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/22/Gray920.png/200px-Gray920.png xref: MA:0000238 xref: ncithesaurus:Osseous_Labyrinth xref: OG:0001219 xref: SCTID:279727008 xref: XAO:0000193 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001694 ! petrous part of temporal bone relationship: part_of UBERON:0001846 ! internal ear relationship: part_of UBERON:0004681 ! vestibular system [Term] id: UBERON:0001840 name: semicircular canal alt_id: UBERON:FMA_60186-MA_0000249-XAO_0000198-ZFA_0000431 def: "One of three half-circular, interconnected tubes located inside each ear[WP]. Fluid-filled toroidal spaces, arranged orthogonally to each other in the ear, that detect angular accelerations. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)" [Wikipedia:Semicircular_canal, ZFIN:curator] comment: Note that MA divides this into osseous and duct. In FMA, this is systemically part of the bony labyrinth. Note this is an anatomical space in ZFA. The MA treatment has advantages for representing the neuroepithelium, which should not be part of bone. Also check duct vs canal subset: uberon_slim subset: vertebrate_core synonym: "ductus semicirculares" RELATED PLURAL [BTO:0003383, FMA:71880, FMA:TA] xref: AAO:0011098 xref: BTO:0003383 xref: EV:0100365 xref: FMA:60186 xref: GAID:776 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/Balance_Disorder_Illustration_A.png/200px-Balance_Disorder_Illustration_A.png xref: MA:0000249 xref: MESH:A.09.246.631.663 xref: ncithesaurus:Semicircular_Canal xref: OG:0001144 xref: SCTID:279757004 xref: TAO:0000431 xref: XAO:0000198 xref: ZFA:0000431 is_a: UBERON:0000025 {source="GO"} ! tube is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: develops_from UBERON:0003051 ! ear vesicle relationship: part_of UBERON:0001846 {source="MA"} ! internal ear relationship: part_of UBERON:0001849 {source="OG"} ! membranous labyrinth [Term] id: UBERON:0001841 name: anterior semicircular canal alt_id: UBERON:FMA_60187-MA_0001207-ZFA_0000314 def: "One of three fluid-filled toroidal spaces, arranged orthogonally to each other in each ear, that detect angular acceleration. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)" [Wikipedia:Anterior_semicircular_canal, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "anterior semicircular canals" RELATED [] synonym: "anterior semicircular duct" RELATED [] synonym: "rostral vertical semicircular canal" RELATED [] synonym: "superior semicircular canal" EXACT [] xref: EHDAA:7802 xref: EHDAA2:0001959 xref: EMAPA:17299 xref: FMA:60187 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray921.png/200px-Gray921.png xref: MA:0001207 xref: ncithesaurus:Superior_Semicircular_Canal xref: SCTID:279764002 xref: TAO:0000314 xref: ZFA:0000314 is_a: UBERON:0001840 ! semicircular canal relationship: part_of UBERON:0001840 ! semicircular canal [Term] id: UBERON:0001842 name: posterior semicircular canal alt_id: UBERON:FMA_60190-MA_0001209-ZFA_0000262 def: "One of three fluid-filled toroidal spaces, arranged orthogonally to each other in each ear, that detect angular acceleration. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)" [Wikipedia:Posterior_semicircular_canal, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "caudal vertical semicircular canal" RELATED [] synonym: "posterior semicircular canals" RELATED [] synonym: "posterior semicircular duct" RELATED [] xref: EHDAA:7796 xref: EHDAA2:0001489 xref: EMAPA:17296 xref: FMA:60190 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray921.png/200px-Gray921.png xref: MA:0001209 xref: ncithesaurus:Posterior_Semicircular_Canal xref: SCTID:279762003 xref: TAO:0000262 xref: ZFA:0000262 is_a: UBERON:0001840 ! semicircular canal relationship: part_of UBERON:0001840 ! semicircular canal [Term] id: UBERON:0001843 name: lateral semicircular canal alt_id: UBERON:FMA_60193-MA_0001208-ZFA_0000220 def: "One of three fluid-filled toroidal spaces, arranged orthogonally to each other in each ear, that detect angular acceleration. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)" [Wikipedia:Lateral_semicircular_canal, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "horizontal semicircular canal" RELATED [] synonym: "lateral semicircular canals" RELATED [] synonym: "lateral semicircular duct" RELATED [] xref: EHDAA:7790 xref: EHDAA2:0000920 xref: EMAPA:17821 xref: FMA:60193 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray921.png/200px-Gray921.png xref: MA:0001208 xref: SCTID:279761005 xref: TAO:0000220 xref: ZFA:0000220 is_a: UBERON:0001840 ! semicircular canal relationship: part_of UBERON:0001840 ! semicircular canal [Term] id: UBERON:0001844 name: cochlea alt_id: UBERON:FMA_60201-MA_0000240-MIAA_0000144-XAO_0000197 def: "The cochlea is the auditory portion of the inner ear. Its core component is the Organ of Corti, the sensory organ of hearing, which is distributed along the partition separating fluid chambers in the coiled tapered tube of the cochlea. The name is from the Latin for snail, which is from the Greek kokhlias 'snail, screw,' from kokhlos 'spiral shell,' in reference to its coiled shape; the cochlea is coiled in most mammals, monotremes being the exceptions. [WP,unvetted]." [Wikipedia:Cochlea] comment: The association with 'lagena' in frog and fish comes from HOG, although HOG is inconsistent here, associating lagena with XAO cochlea and ZFA cochlear duct. NBK53175 says: "In contrast, the ventrally located auditory chambers have undergone more extensive evolutionary modifications. The saccule and lagena are prominent auditory organs in fish but the saccule has a vestibular role in mammals and birds, and the lagena is absent in mammals. The primary au- ditory organ in mammals and birds is the cochlea, which has no known counterpart in amphibians and fish (Riley and Phillips, 2003)" subset: uberon_slim subset: vertebrate_core synonym: "cochlear organ" RELATED [BTO:0000267] synonym: "cochlear part of bony labyrinth" EXACT [] synonym: "lagena" EXACT SENSU [XAO:0000197] xref: AAO:0000253 xref: BTO:0000267 xref: EFO:0000357 xref: EMAPA:17597 xref: EV:0100363 xref: FMA:60201 xref: GAID:724 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c7/Cochlea-crosssection.png/200px-Cochlea-crosssection.png xref: MA:0000240 xref: MAT:0000144 xref: MESH:A.09.246.631.246 xref: MIAA:0000144 xref: ncithesaurus:Cochlea xref: NIF_GrossAnatomy:birnlex_1190 xref: NIF_GrossAnatomy:birnlex_883 xref: OG:0000691 xref: OpenCyc:Mx4rvqfJmJwpEbGdrcN5Y29ycA xref: SCTID:181187008 xref: TAO:0000374 xref: XAO:0000197 xref: ZFA:0000374 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001839 ! bony labyrinth [Term] id: UBERON:0001845 name: perilymph alt_id: UBERON:FMA_60908-MA_0002529 def: "Transudate contained in the osseous labyrinth outside the membranous labyrinth.[FMA]" [FMA:FMA, Wikipedia:Perilymph] subset: uberon_slim subset: vertebrate_core xref: FMA:60908 xref: GAID:1185 xref: MA:0002529 xref: MESH:A.12.207.571.678 xref: ncithesaurus:Perilymph xref: ZFA:0005413 is_a: UBERON:0006586 ! otolymph relationship: adjacent_to UBERON:0001839 ! bony labyrinth relationship: adjacent_to UBERON:0001849 ! membranous labyrinth relationship: part_of UBERON:0002278 ! perilymphatic space [Term] id: UBERON:0001846 name: internal ear alt_id: UBERON:FMA_60909-MA_0000237-MIAA_0000145-XAO_0000192-ZFA_0000217 def: "Complex labyrinthine structure that comprises sensory endorgans specialized for vestibular, auditory, and acoustico-vestibular sensation." [PMID:16217737, Wikipedia:Internal_ear, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "auris interna" RELATED [BTO:0000630] synonym: "inner ear" EXACT [] synonym: "labyrinth" RELATED [] synonym: "otocyst" RELATED [] xref: AAO:0000238 xref: BTO:0000630 xref: EFO:0001363 xref: EHDAA:504 xref: EHDAA2:0000831 xref: EMAPA:16194 xref: EV:0100361 xref: FMA:60909 xref: GAID:871 xref: galen:InnerEar xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/19/Gray923.png/200px-Gray923.png xref: MA:0000237 xref: MAT:0000145 xref: MESH:A.09.246.631 xref: MIAA:0000145 xref: ncithesaurus:Internal_Ear xref: NIF_GrossAnatomy:birnlex_1196 xref: OG:0000284 xref: OpenCyc:Mx4rwJ8SsJwpEbGdrcN5Y29ycA xref: SCTID:181189006 xref: TAO:0000217 xref: XAO:0000192 xref: ZFA:0000217 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001690 ! ear [Term] id: UBERON:0001847 name: lobule of pinna alt_id: UBERON:FMA_60984-MA_0002468 def: "The earlobe is, in humans and many other animals, the soft lower part of the external ear. It is the lowermost portion of the human pinna, projecting below the antitragus. The earlobe is composed of tough areolar and adipose (fatty) connective tissues, lacking the firmness and elasticity of the rest of the pinna. Since the earlobe does not contain cartilage the earlobe has a large blood supply and may help to warm the ears and maintain balance but generally earlobes are not considered to have any major biological function. [WP,unvetted]." [Wikipedia:Ear_lobe] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "auricular lobule" EXACT [] synonym: "ear lobe" EXACT [] synonym: "ear lobule" RELATED [] synonym: "lobe of ear" EXACT [] synonym: "lobule of auricle" RELATED [] synonym: "lobule of auricle of ear" EXACT [] synonym: "lobulus auriculae" EXACT [FMA:60984, FMA:TA] synonym: "pinna lobule" EXACT [] xref: FMA:60984 xref: MA:0002468 xref: ncithesaurus:Lobule_of_the_Auricle is_a: UBERON:0001444 ! subdivision of head relationship: part_of UBERON:0001757 ! pinna [Term] id: UBERON:0001848 name: auricular cartilage alt_id: UBERON:FMA_61013-MA_0001227 synonym: "cartilage of pinna" EXACT [FMA:61013] xref: FMA:61013 xref: MA:0001227 xref: SCTID:279627003 is_a: UBERON:0001867 ! implied link automatically realized ! cartilage of external ear relationship: part_of UBERON:0001757 intersection_of: UBERON:0002418 ! cartilage tissue intersection_of: part_of UBERON:0001757 ! pinna relationship: part_of UBERON:0001757 {source="FMA"} ! pinna [Term] id: UBERON:0001849 name: membranous labyrinth alt_id: UBERON:FMA_61022-MA_0000242-XAO_0000194 def: "Organ with organ cavity which consists of the vestibular labyrinth and the cochlear labyrinth. Examples: There are only two membranous labyrinths, the right and the left.[FMA]" [FMA:FMA, Wikipedia:Membranous_labyrinth] comment: inner ear has parts membranous and osseuous/bony labyrinth. it's not clear where the edinburgh terms 'labyrinth' belong, we place them here for now subset: organ_slim subset: uberon_slim xref: AAO:0011060 xref: EHDAA:4698 xref: EHDAA2:0000899 xref: EMAPA:17815 xref: EV:0100367 xref: FMA:61022 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray924.png/200px-Gray924.png xref: MA:0000242 xref: ncithesaurus:Membranous_Labyrinth xref: OG:0000729 xref: SCTID:263790009 xref: XAO:0000194 is_a: UBERON:0000062 ! organ relationship: part_of UBERON:0001846 ! internal ear [Term] id: UBERON:0001850 name: lacrimal duct alt_id: UBERON:FMA_61063-MA_0001295 def: "Organ with organ cavity which connects the vestibule of the conjunctival sac to the nasal cavity. Examples: There are only two lacrimal ducts, the right and the left lacrimal ducts.[FMA]" [FMA:61063, Wikipedia:Lacrimal_duct] comment: todo - resolve canaliculus vs tear duct vs lacrimal vs nasolacrimal subset: uberon_slim synonym: "lacrimal caniculi" RELATED [Wikipedia:Lacrimal] synonym: "tear duct" RELATED [MA:0001295] xref: EMAPA:19245 xref: FMA:61063 xref: MA:0001295 is_a: UBERON:0000058 ! duct relationship: part_of UBERON:0001750 {source="FMA"} ! lacrimal apparatus [Term] id: UBERON:0001851 name: cortex alt_id: UBERON:FMA_61109-XAO_0000216 def: "Outermost layer of an organ[WP]." [Wikipedia:Cortex_(anatomy)] comment: This class is used in a very general sense subset: uberon_slim xref: AAO:0010327 xref: EFO:0000383 xref: EHDAA:9344 xref: EMAPA:18427 xref: FMA:61109 xref: galen:Cortex is_a: UBERON:0000064 ! organ part relationship: surrounds UBERON:0000062 ! organ [Term] id: UBERON:0001852 name: endolymph alt_id: UBERON:FMA_61112-MA_0002528 def: "Transudate contained within the membranous labyrinth.[FMA]" [FMA:FMA, Wikipedia:Endolymph] subset: uberon_slim subset: vertebrate_core xref: FMA:61112 xref: GAID:1184 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c7/Cochlea-crosssection.png/200px-Cochlea-crosssection.png xref: MA:0002528 xref: MESH:A.12.207.571.324 xref: ncithesaurus:Endolymph xref: ZFA:0005414 is_a: UBERON:0006586 ! otolymph relationship: surrounded_by UBERON:0001849 ! membranous labyrinth [Term] id: UBERON:0001853 name: utricle of membranous labyrinth alt_id: UBERON:FMA_61113-MA_0000247-XAO_0000195-ZFA_0000700 def: "one of the two otolith organs located in the vertebrate inner ear. These use small stones and a viscous fluid to stimulate hair cells to detect motion and orientation. The utricle is larger than the saccule and is of an oblong form, compressed transversely, and occupies the upper and back part of the vestibule, lying in contact with the recessus ellipticus and the part below it. The utricle contains mechanoreceptors called hair cells that distinguish between degrees of tilting of the head, thanks to their apical cilia set-up. These are covered by otolith which, due to gravity, pull on the cilia and tilt them. Depending on whether the tilt is in the direction of the kinocilium or not, the resulting hair cell polarisation is excitatory (depolarising) or inhibitory (hyperpolarisation), respectively. This signal to the vestibular nerve (which takes it to the brainstem) does not adapt with time. The effect of this is that, for example, an individual lying down to sleep will continue to detect that they are lying down hours later when they awaken[WP]." [Wikipedia:Utricle_(ear)] comment: AAO to be checked subset: organ_slim subset: uberon_slim subset: vertebrate_core synonym: "membranous labyrinth utricle" EXACT [] synonym: "utricle" EXACT [] synonym: "utriculus" EXACT [ZFA:0000700] synonym: "utriculus (labyrinthus vestibularis)" EXACT [] xref: AAO:0000625 xref: BTO:0001807 xref: EHDAA:4726 xref: EHDAA2:0002153 xref: EMAPA:17293 xref: EV:0100368 xref: FMA:61113 xref: MA:0000247 xref: ncithesaurus:Utricle xref: OG:0000289 xref: SCTID:279817006 xref: TAO:0000700 xref: XAO:0000195 xref: ZFA:0000700 is_a: UBERON:0002518 ! otolith organ [Term] id: UBERON:0001854 name: saccule of membranous labyrinth alt_id: UBERON:FMA_61116-MA_0000246-ZFA_0000428 def: "A bed of sensory cells situated in the inner ear. The saccule translates head movements into neural impulses which the brain can interpret. The saccule is sensitive to linear translations of the head, specifically movements up and down (think about moving on an elevator). When the head moves vertically, the sensory cells of the saccule are disturbed and the neurons connected to them begin transmitting impulses to the brain. These impulses travel along the vestibular portion of the eighth cranial nerve to the vestibular nuclei in the brainstem. is the smaller of the two vestibular sacs. It is globular in form and lies in the recessus sphæricus near the opening of the scala vestibuli of the cochlea. Its cavity does not directly communicate with that of the utricle. The anterior part of the saccule exhibits an oval thickening, the macula acustica sacculi, or macula, to which are distributed the saccular filaments of the vestibular branch of the vestibulocochlear nerve, also known as the acoustic nerve or cranial nerve VIII[WP]." [Wikipedia:Saccule] comment: AAO to be checked subset: organ_slim subset: uberon_slim subset: vertebrate_core synonym: "membranous labyrinth saccule" EXACT [] synonym: "saccule" EXACT [] synonym: "sacculus" EXACT [ZFA:0000428] synonym: "sacculus (labyrinthus vestibularis)" EXACT [] xref: AAO:0000550 xref: BTO:0001805 xref: EHDAA:4712 xref: EHDAA2:0001769 xref: EMAPA:17290 xref: EV:0100369 xref: FMA:61116 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Bigotolith.jpg/200px-Bigotolith.jpg xref: MA:0000246 xref: ncithesaurus:Saccule xref: OG:0000374 xref: SCTID:279827000 xref: TAO:0000428 xref: XAO:0000196 xref: ZFA:0000428 is_a: UBERON:0002518 ! otolith organ [Term] id: UBERON:0001855 name: cochlear duct of membranous labyrinth alt_id: UBERON:FMA_61119-MA_0000243 def: "An endolymph filled cavity inside the cochlea, located in between the scala tympani and the scala vestibuli, separated by the basilar membrane and Reissner's membrane (the vestibular membrane) respectively. Houses the organ of Corti[WP]." [Wikipedia:Cochlear_duct] comment: TODO: check cochlear duct vs cochlear aqueduct vs scala media subset: uberon_slim synonym: "cochlea duct" EXACT [NIF_GrossAnatomy:birnlex_2562] synonym: "cochlear aqueduct" RELATED [] synonym: "cochlear duct" EXACT [] synonym: "ductus cochlearis" RELATED [BTO:0001692] synonym: "membranous cochlea" RELATED [BTO:0001692] synonym: "Reissner's canal" EXACT [] synonym: "reissners canal" EXACT [NIF_GrossAnatomy:birnlex_2562] synonym: "scala media" RELATED [Wikipedia:Cochlear_duct] synonym: "scala medias" EXACT [NIF_GrossAnatomy:birnlex_2562] synonym: "scala of Loewenberg" RELATED [BTO:0001692] xref: BTO:0001692 xref: EHDAA:4718 xref: EHDAA2:0000262 xref: EMAPA:17598 xref: FMA:61119 xref: GAID:874 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bc/Gray928.png/200px-Gray928.png xref: MA:0000243 xref: MESH:A.09.246.631.246.292 xref: ncithesaurus:Cochlear_Duct xref: NIF_GrossAnatomy:birnlex_2562 xref: OG:0000507 xref: SCTID:279849006 is_a: UBERON:0000058 ! duct is_a: UBERON:0005744 ! implied link automatically realized ! cranial conduit relationship: part_of UBERON:0001844 ! cochlea relationship: part_of UBERON:0001849 ! membranous labyrinth relationship: part_of UBERON:0002499 ! cochlear labyrinth [Term] id: UBERON:0001856 name: semicircular duct alt_id: UBERON:FMA_61122-MA_0000251 def: "any of the three loop-shaped membranous inner tubular parts of the semicircular canals that are about one-fourth the diameter of the corresponding outer bony canals, that communicate at each end with the utricle, and that have near one end an expanded ampulla containing an area of sensory epithelium" [http://dictionary.reference.com/browse/semicircular+duct] comment: TODO - check canal vs duct. see http://en.wikipedia.org/wiki/File:Gray927.png synonym: "ductus semicirculares" RELATED PLURAL [FMA:71880, FMA:TA] synonym: "membranous semicircular canal" RELATED [MA:0000251] xref: FMA:61122 xref: MA:0000251 xref: ncithesaurus:Semicircular_Duct xref: OG:0000238 xref: SCTID:279833009 is_a: UBERON:0000058 ! duct is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001840 {source="MA"} ! semicircular canal relationship: part_of UBERON:0001862 {source="FMA", source="MA"} ! vestibular labyrinth [Term] id: UBERON:0001857 name: anterior semicircular duct alt_id: UBERON:FMA_61123-MA_0001211 comment: This class was created automatically from a combination of ontologies xref: FMA:61123 xref: MA:0001211 xref: OG:0000246 xref: SCTID:279836001 is_a: UBERON:0001856 ! semicircular duct relationship: part_of UBERON:0001841 ! anterior semicircular canal [Term] id: UBERON:0001858 name: posterior semicircular duct alt_id: UBERON:FMA_61126-MA_0001214 def: "The semicircular canals are three half-circular, interconnected tubes located inside each ear. The three canals are the horizontal semicircular canal (also known as the lateral semicircular canal), superior semicircular canal (also known as the anterior semicircular canal), and the posterior semicircular canal. The canals are aligned approximately orthogonally to one another. The horizontal canal is aligned roughly horizontally in the head. The superior and anterior canals are aligned roughly at a 45 degree angle to a vertical plane drawn from the nose to the back of the skull. Thus, the horizontal canal detects horizontal head movements (such as when doing a pirouette), while the superior and posterior canals detect vertical head movements. Each canal is filled with a fluid called endolymph and contains a motion sensor with little hairs whose ends are embedded in a gelatinous structure called the cupula. As the skull twists in any direction, the endolymph is thrown into different sections of the canals. The cilia detect when the endolymph rushes past, and a signal is then sent to the brain. The semicircular canals are a component of the Labyrinth. Among species of mammals, the size of the semicircular canals is correlated with their type of locomotion. Specifically, species that are agile and have fast, jerky locomotion have larger canals relative to their body size than those that move more cautiously. [WP,unvetted]." [Wikipedia:Posterior_semicircular_duct] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:61126 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/Balance_Disorder_Illustration_A.png/200px-Balance_Disorder_Illustration_A.png xref: MA:0001214 xref: OG:0000248 xref: SCTID:279835002 is_a: UBERON:0001856 ! semicircular duct relationship: part_of UBERON:0001842 ! posterior semicircular canal [Term] id: UBERON:0001859 name: lateral semicircular duct alt_id: UBERON:FMA_61129-MA_0001213 def: "The lateral or horizontal canal (external semicircular canal) is the shortest of the three canals. Movement of fluid within this canal corresponds to rotation of the head around a vertical axis (i.e. the neck). [WP,unvetted]." [Wikipedia:Lateral_semicircular_duct] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:61129 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray921.png/200px-Gray921.png xref: MA:0001213 xref: OG:0000247 xref: SCTID:279834003 is_a: UBERON:0001856 ! semicircular duct relationship: part_of UBERON:0001843 ! lateral semicircular canal [Term] id: UBERON:0001860 name: endolymphatic duct alt_id: UBERON:FMA_61246-MA_0001187 def: "From the posterior wall of the saccule a canal, the endolymphatic duct, is given off; this duct is joined by the ductus utriculosaccularis, and then passes along the aquaeductus vestibuli and ends in a blind pouch on the posterior surface of the petrous portion of the temporal bone, where it is in contact with the dura mater. [WP,unvetted]." [Wikipedia:Endolymphatic_duct] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core xref: EMAPA:18580 xref: FMA:61246 xref: GAID:886 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray924.png/200px-Gray924.png xref: MA:0001187 xref: MESH:A.09.246.631.909.957.360 xref: SCTID:362567008 xref: ZFA:0001705 is_a: UBERON:0000058 ! duct relationship: part_of UBERON:0001849 ! membranous labyrinth [Term] id: UBERON:0001861 name: ductus reuniens alt_id: UBERON:FMA_61252-MA_0000244 comment: This class was created automatically from a combination of ontologies xref: EMAPA:17287 xref: FMA:61252 xref: MA:0000244 xref: SCTID:279805009 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001849 ! membranous labyrinth [Term] id: UBERON:0001862 name: vestibular labyrinth alt_id: UBERON:FMA_61255-MA_0000245 def: "The part of the membranous labyrinth that includes the utricle and saccule lodged within the vestibule and the semicircular ducts lodged eccentrically in the corresponding canals." [BTO:0001856] synonym: "labyrinthus vestibularis" RELATED [BTO:0001856] synonym: "vestibular apparatus" RELATED [] xref: BTO:0001856 xref: EHDAA2:0000832 xref: EMAPA:17286 xref: FMA:61255 xref: MA:0000245 xref: ncithesaurus:Vestibular_Labyrinth xref: SCTID:181188003 xref: XAO:0004145 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001849 ! membranous labyrinth [Term] id: UBERON:0001863 name: scala vestibuli alt_id: UBERON:FMA_61269-MA_0001206 def: "Scala vestibuli is a perilymph filled cavity inside the cochlea of the inner ear. It is separated from the scala media by Reissner's membrane and extends from the oval window to the helicotrema where it joins scala tympani. [WP,unvetted]." [Wikipedia:Scala_vestibuli] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:61269 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/19/Gray923.png/200px-Gray923.png xref: MA:0001206 xref: SCTID:362578000 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001844 ! cochlea relationship: part_of UBERON:0002278 ! perilymphatic space [Term] id: UBERON:0001864 name: scala tympani alt_id: UBERON:FMA_61272-MA_0001205 def: "Scala tympani is one of the perilymph-filled cavities in the cochlear labyrinth. It is separated from the scala media by the basilar membrane, and it extends from the round window to the helicotrema, where it continues as scala vestibuli. The purpose of the perilymph-filled scala tympani and scala vestibuli is to transduce the movement of air that causes the tympanic membrane and the ossicles to vibrate, to movement of liquid and the basilar membrane. This movement is conveyed to the organ of Corti inside the scala media, composed of hair cells attached to the basilar membrane and their stereocilia embedded in the tectorial membrane. The movement of the basilar membrane compared to the tectorial membrane causes the sterocilia to bend. They then depolarise and send impulses to the brain via the cochlear nerve. This produces the sensation of sound. [WP,unvetted]." [Wikipedia:Scala_tympani] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:61272 xref: GAID:879 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray921.png/200px-Gray921.png xref: MA:0001205 xref: MESH:A.09.246.631.246.848 xref: SCTID:362579008 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001844 ! cochlea relationship: part_of UBERON:0002278 ! perilymphatic space [Term] id: UBERON:0001865 name: cartilaginous external acoustic tube alt_id: UBERON:FMA_61289-MA_0001234 comment: This class was created automatically from a combination of ontologies synonym: "cartilaginous external acoustic meatus" EXACT [] synonym: "cartilaginous part of external acoustic meatus" EXACT [] synonym: "external acoustic meatus cartilaginous part" EXACT [] synonym: "meatus acusticus externus cartilagineus" EXACT [FMA:61289, FMA:TA] xref: FMA:61289 xref: MA:0001234 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001352 ! external acoustic meatus [Term] id: UBERON:0001866 name: sebum alt_id: UBERON:FMA_61304-MA_0002538 def: "The sebaceous glands are microscopic glands in the skin which secrete an oily/waxy matter, called sebum, to lubricate the skin and hair of animals. [WP,unvetted]." [Wikipedia:Sebum] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: BTO:0001981 xref: ENVO:02000037 xref: FMA:61304 xref: GAID:1168 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/49/HairFollicle.png/200px-HairFollicle.png xref: MA:0002538 xref: MESH:A.12.200.702 xref: ncithesaurus:Sebum is_a: UBERON:0000456 ! secretion [Term] id: UBERON:0001867 name: cartilage of external ear alt_id: UBERON:FMA_61339-MA_0001886 def: "A cartilage that is part of a external ear [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "auricular region cartilage" EXACT [OBOL:automatic] synonym: "auricular region of head cartilage" EXACT [OBOL:automatic] synonym: "cartilage of auricular region" EXACT [OBOL:automatic] synonym: "cartilage of auricular region of head" EXACT [OBOL:automatic] synonym: "cartilage of outer ear" EXACT [OBOL:automatic] synonym: "external ear cartilage" EXACT [] synonym: "outer ear cartilage" EXACT [OBOL:automatic] xref: FMA:61339 xref: GAID:103 xref: MA:0001886 xref: MESH:A.02.165.207 xref: ncithesaurus:External_Ear_Cartilage is_a: UBERON:0001996 ! elastic cartilage is_a: UBERON:0003566 ! implied link automatically realized ! head connective tissue relationship: part_of UBERON:0001691 intersection_of: UBERON:0002418 ! cartilage tissue intersection_of: part_of UBERON:0001691 ! external ear relationship: part_of UBERON:0001691 ! external ear [Term] id: UBERON:0001868 name: skin of chest alt_id: UBERON:FMA_61415-MA_0000553 def: "A zone of skin that is part of a chest [Obol]." [OBOL:automatic] comment: check FMA:61415 synonym: "anterior thoracic region zone of skin" EXACT [OBOL:automatic] synonym: "anterolateral part of thorax zone of skin" EXACT [OBOL:automatic] synonym: "chest skin" EXACT [] synonym: "chest zone of skin" EXACT [OBOL:automatic] synonym: "front of thorax zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of anterior chest" EXACT [FMA:61416] synonym: "zone of skin of anterior part of thorax" EXACT [FMA:61416] synonym: "zone of skin of anterior thoracic region" EXACT [OBOL:automatic] synonym: "zone of skin of anterolateral part of thorax" EXACT [OBOL:automatic] synonym: "zone of skin of chest" EXACT [OBOL:automatic] synonym: "zone of skin of front of thorax" EXACT [OBOL:automatic] xref: FMA:61416 xref: FMA:61417 xref: MA:0000553 xref: SCTID:181496004 is_a: UBERON:0001418 ! skin of thorax relationship: part_of UBERON:0001443 intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0001443 ! chest relationship: part_of UBERON:0001443 ! chest [Term] id: UBERON:0001869 name: cerebral hemisphere alt_id: UBERON:FMA_61817-MA_0000133 def: "One of two bilateral, largely symmetrical organ subdivisions within the telencephalon which contain the cerebral cortex and cerebral white matter.[FMA]" [FMA:FMA, Wikipedia:Cerebral_hemisphere] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "cerebrum" RELATED [] xref: AAO:0010480 xref: BTO:0000231 xref: EFO:0002521 xref: FMA:61817 xref: galen:CerebralHemisphere xref: MA:0000133 xref: ncithesaurus:Cerebral_Hemisphere xref: NIF_GrossAnatomy:birnlex_1042 xref: OG:0001639 xref: OpenCyc:Mx4rvigx5ZwpEbGdrcN5Y29ycA xref: SCTID:278251007 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001893 ! telencephalon [Term] id: UBERON:0001870 name: frontal cortex alt_id: UBERON:FMA_61824-MA_0000905 def: "Frontal lobe is the anterior-most of five lobes of the cerebral hemisphere. It is bounded by the central sulcus on its posterior border and by the longitudinal cerebral fissure on its medial border." [Wikipedia:Frontal_lobe] comment: Editor note: Many species don't have lobes but they do have frontal cortex. Lobe isn't a really well defined term though [MM] subset: uberon_slim synonym: "frontal lobe" EXACT [FMA:61824] synonym: "frontal region" EXACT [] synonym: "regio frontalis" EXACT [FMA:61824, FMA:TA] xref: BM:Tel-Cx-FR xref: BTO:0000484 xref: EFO:0000913 xref: EV:0100167 xref: FMA:61824 xref: GAID:674 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b4/Gray729.png/200px-Gray729.png xref: MA:0000905 xref: MAT:0000505 xref: MESH:A.08.186.211.730.885.213.270 xref: ncithesaurus:Frontal_Lobe xref: NIF_GrossAnatomy:birnlex_928 xref: NIF_GrossAnatomy:nlx_anat_20090601 xref: OpenCyc:Mx4rv3OJ8JwpEbGdrcN5Y29ycA xref: SCTID:180920004 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: adjacent_to UBERON:0001871 ! temporal lobe relationship: adjacent_to UBERON:0001872 ! parietal lobe relationship: part_of UBERON:0001950 ! neocortex [Term] id: UBERON:0001871 name: temporal lobe alt_id: UBERON:FMA_61825-MA_0000941 def: "Temporal lobe is the ventrolateral lobe of five lobes comprising each cerebral hemisphere. It is bounded dorsally by the lateral fissure and posteriorly by an arbitrary border shared with the occipital lobe." [Wikipedia:Temporal_lobe] subset: uberon_slim synonym: "temporal cortex" EXACT [] synonym: "temporal neocortex" EXACT [DHB:TCx] xref: BM:Tel-Cx-Te xref: BTO:0001355 xref: EFO:0000917 xref: EMAPA:18797 xref: EV:0100169 xref: FMA:61825 xref: GAID:635 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/91/Gray730.png/200px-Gray730.png xref: MA:0000941 xref: MAT:0000508 xref: MESH:A.08.186.211.730.885.213.863 xref: ncithesaurus:Temporal_Lobe xref: NIF_GrossAnatomy:birnlex_1160 xref: OpenCyc:Mx4rwQLi-ZwpEbGdrcN5Y29ycA xref: SCTID:180921000 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001950 ! neocortex [Term] id: UBERON:0001872 name: parietal lobe alt_id: UBERON:FMA_61826-MA_0000916 def: "Parietal lobe is the one of five lobes of the cerebral hemisphere which occupies the dorsal-posterior portion of the hemisphere. It is bounded by the central sulcus on its anterior border and and by the longitudinal cerebral fissure on its medial border. Posteriorly it shares an arbitrary border with the occipital lobe." [Wikipedia:Parietal_lobe] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "parietal cortex" EXACT [] synonym: "parietal neocortex" EXACT [DHB:PCx] synonym: "parietal region" EXACT [] synonym: "regio parietalis" EXACT [FMA:61826, FMA:TA] xref: BTO:0001001 xref: EFO:0000914 xref: EV:0100168 xref: FMA:61826 xref: GAID:680 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b2/Gray726_parietal_lobe.png/200px-Gray726_parietal_lobe.png xref: MA:0000916 xref: MAT:0000506 xref: MESH:A.08.186.211.730.885.213.670 xref: ncithesaurus:Parietal_Lobe_of_the_Brain xref: NIF_GrossAnatomy:birnlex_1148 xref: OpenCyc:Mx4rvg-typwpEbGdrcN5Y29ycA xref: SCTID:180922007 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: adjacent_to UBERON:0001871 ! temporal lobe relationship: part_of UBERON:0001950 ! neocortex [Term] id: UBERON:0001873 name: caudate nucleus alt_id: UBERON:FMA_61833-MA_0000894 def: "Nucleus of brain which is an elongated crescent-shaped mass lying parallel and adjacent to the lateral ventricle throughout its extent." [Wikipedia:Caudate_nucleus] comment: CHECK - rodents. The caudate nucleus and putamen are separated by a clear white matter bundle in most species but not in rodents (MM) subset: uberon_slim synonym: "caudatus" EXACT [] synonym: "nucleus caudatus" RELATED [BTO:0000211] xref: BM:Tel-CA xref: BTO:0000211 xref: EFO:0000907 xref: EMAPA:18207 xref: EV:0100185 xref: FMA:61833 xref: GAID:670 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/91/Telencephalon-Horiconatal.jpg/200px-Telencephalon-Horiconatal.jpg xref: MA:0000894 xref: MAT:0000513 xref: MESH:A.08.186.211.730.885.105.487.550.184 xref: ncithesaurus:Caudate_Nucleus xref: NIF_GrossAnatomy:birnlex_1373 xref: OpenCyc:Mx4rvvyAjJwpEbGdrcN5Y29ycA xref: SCTID:279297002 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0009663 ! implied link automatically realized ! telencephalic nucleus relationship: part_of UBERON:0001869 ! cerebral hemisphere relationship: part_of UBERON:0002435 ! striatum relationship: part_of UBERON:0005383 ! caudate-putamen [Term] id: UBERON:0001874 name: putamen alt_id: UBERON:FMA_61834-MA_0000895 def: "Nucleus of brain which lies ventral to the caudate nucleus and internal capsule and medial to the external capsule. The putamen and caudate nucleus together form the dorsal striatum. It is also one of the structures that comprises the basal ganglia. Through various pathways, the putamen is connected to the substantia nigra and globus pallidus. The main function of the putamen is to regulate movements and influence various types of learning. It employs dopamine to perform its functions. The putamen also plays a role in degenerative neurological disorders, such as Parkinson's disease." [Wikipedia:Putamen] comment: CHECK - rodents. The caudate nucleus and putamen are separated by a clear white matter bundle in most species but not in rodents (MM) subset: uberon_slim synonym: "nucleus putamen" EXACT [] xref: BM:Tel-Pu xref: EV:0100187 xref: FMA:61834 xref: GAID:671 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/BrainCaudatePutamen.svg/200px-BrainCaudatePutamen.svg.png xref: MA:0000895 xref: MESH:A.08.186.211.730.885.105.487.550.784 xref: ncithesaurus:Putamen xref: NIF_GrossAnatomy:birnlex_809 xref: OG:0001456 xref: SCTID:281512002 is_a: UBERON:0002308 {source="FMA"} ! nucleus of brain is_a: UBERON:0009663 ! implied link automatically realized ! telencephalic nucleus relationship: part_of UBERON:0001869 {source="FMA"} ! cerebral hemisphere relationship: part_of UBERON:0002435 ! striatum relationship: part_of UBERON:0005383 ! caudate-putamen [Term] id: UBERON:0001875 name: globus pallidus alt_id: UBERON:FMA_61835-MA_0000890 def: "Subcortical nucleus, functionally part of the basal ganglia, which consists of two segments the external (or lateral) and internal (or medial) separated by the medial medullary lamina in primates. In rodents, The globus pallidus lateral is separated from the medial segment by the fibers of the internal capsule/cerebral peduncle[NIF]. Nucleus of brain which is located medially to the putamen and laterally to the internal capsule[FMA]." [FMA:61835, NIF_GrossAnatomy:birnlex_1234, Wikipedia:Globus_pallidus] comment: BTO and MA are inconsistent w.r.t striatum and pallidum being non-overlapping as in ABA. Note that we have pallidum as part_of basal gangion, so we can make the direct link to basal ganglion. ISBN10:1588900649 says: ... a derivative of the diencephalon, seperates as a result of growing fibers of theinternal capsule and is finally displaced into telencephalon. only a small medial remnannt remains, the entopeduncular nucleus. The globus pallidus should be regarded as part of the subthalamus subset: uberon_slim synonym: "pale body" EXACT [NIF_GrossAnatomy:birnlex_1234] synonym: "paleostriatum" EXACT [Wikipedia:Globus_pallidus] synonym: "pallidium" RELATED [Wikipedia:Globus_pallidus] synonym: "pallidum" RELATED [GO:0021759, NIF_GrossAnatomy:birnlex_1234, Wikipedia:Globus_pallidus] xref: BTO:0002246 xref: EFO:0000905 xref: EV:0100188 xref: FMA:61835 xref: GAID:668 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/Brain_structure.gif/200px-Brain_structure.gif xref: MA:0000890 xref: MAT:0000510 xref: MESH:A.08.186.211.730.885.105.487.397 xref: ncithesaurus:Globus_Pallidus xref: NIF_GrossAnatomy:birnlex_1234 xref: SCTID:362361005 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0009663 ! implied link automatically realized ! telencephalic nucleus relationship: develops_from_part_of UBERON:0001894 {source="GO", source="ISBN10:1588900649"} ! diencephalon relationship: overlaps UBERON:0002263 {source="BTO-weakened"} ! lentiform nucleus relationship: part_of UBERON:0001869 ! cerebral hemisphere relationship: part_of UBERON:0002420 {source="NIF_GrossAnatomy"} ! basal ganglion relationship: part_of UBERON:0006514 {source="MA"} ! pallidum [Term] id: UBERON:0001876 name: amygdala alt_id: UBERON:FMA_61841-MA_0000887-MIAA_0000289 def: "Subdivision of basal ganglion of telencephalon which is an almond-shaped gray mass in the dorsomedial part of the temporal lobe[FMA]" [Wikipedia:Amygdala] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "amygdaloid area" RELATED [] synonym: "amygdaloid body" EXACT [] synonym: "amygdaloid complex" EXACT [] synonym: "amygdaloid nuclear complex" EXACT [] synonym: "amygdaloid nuclear group" RELATED [BTO:0001042] synonym: "amygdaloid nuclear groups" EXACT [] synonym: "archistriatum" EXACT [] synonym: "corpus amygdaloideum" RELATED [BTO:0001042] synonym: "nucleus amygdalae" RELATED [BTO:0001042] xref: BM:Tel-Am xref: BTO:0001042 xref: EFO:0000252 xref: EV:0100189 xref: EV:0100190 xref: FMA:61841 xref: GAID:616 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Amyg.png/200px-Amyg.png xref: MA:0000887 xref: MAT:0000289 xref: MESH:A.08.186.211.577.090 xref: MIAA:0000289 xref: ncithesaurus:Amygdala xref: NIF_GrossAnatomy:birnlex_1241 xref: OG:0001277 xref: OpenCyc:Mx4rwJC_2ZwpEbGdrcN5Y29ycA is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0000349 ! limbic system relationship: part_of UBERON:0001869 ! cerebral hemisphere relationship: part_of UBERON:0002420 ! basal ganglion [Term] id: UBERON:0001877 name: medial septal nucleus alt_id: UBERON:FMA_61879-MA_0000935 comment: This class was created automatically from a combination of ontologies synonym: "medial parolfactory nucleus" EXACT [] synonym: "medial septum" NARROW [NIF_GrossAnatomy:birnlex_1668] xref: ABA:MS xref: BM:Tel-Spt-SMN xref: BTO:0002446 xref: FMA:61879 xref: MA:0000935 xref: NIF_GrossAnatomy:birnlex_1668 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0001878 name: septofimbrial nucleus alt_id: UBERON:FMA_61881-MA_0000938 comment: This class was created automatically from a combination of ontologies synonym: "nucleus septofibrialis" EXACT [NIF_GrossAnatomy:birnlex_730] synonym: "scattered nucleus of the septum" EXACT [] xref: ABA:SF xref: BM:SFN xref: FMA:61881 xref: MA:0000938 xref: NIF_GrossAnatomy:birnlex_730 is_a: UBERON:0002308 ! nucleus of brain relationship: spatially_disjoint_from UBERON:0002667 {source="ABA"} ! lateral septal nucleus relationship: spatially_disjoint_from UBERON:0007630 {source="ABA"} ! septohippocampal nucleus [Term] id: UBERON:0001879 name: nucleus of diagonal band alt_id: UBERON:FMA_61882-MA_0000936 comment: This class was created automatically from a combination of ontologies synonym: "diagonal band nucleus" EXACT [] synonym: "nucleus of the diagonal band of broca" EXACT [] synonym: "olfactory area (roberts)" EXACT [] xref: ABA:NDB xref: FMA:61882 xref: MA:0000936 xref: NIF_GrossAnatomy:birnlex_719 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0001880 name: bed nucleus of stria terminalis alt_id: UBERON:FMA_61884-MA_0000925 def: "A brain structure in the forebrain wrapped around the stria terminalis. It's largest extent can be found around the crossing of the anterior commissure[INCF]." [INCF:Seattle_mtg_2010] comment: This class was created automatically from a combination of ontologies synonym: "bed nucleus of the stria terminalis" EXACT [NIF_GrossAnatomy:birnlex_724] synonym: "bed nucleus stria terminalis (johnson)" EXACT [NIF_GrossAnatomy:birnlex_724] synonym: "BST" BROAD [INCF:Seattle_mtg_2010] synonym: "intercalate nucleus of stria terminalis" EXACT [] synonym: "interstitial nucleus of stria terminalis" EXACT [NIF_GrossAnatomy:birnlex_724] synonym: "nuclei of stria terminalis" EXACT [] synonym: "nucleus of stria terminalis" EXACT [FMA:61884] synonym: "nucleus striae terminalis" EXACT [FMA:61884, FMA:TA] synonym: "stria terminalis nucleus" EXACT [] xref: ABA:BST xref: BM:BNST xref: BTO:0002698 xref: EFO:0001971 xref: FMA:61884 xref: MA:0000925 xref: NIF_GrossAnatomy:birnlex_724 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0009663 ! implied link automatically realized ! telencephalic nucleus relationship: part_of UBERON:0000446 ! septum of telencephalon relationship: surrounds UBERON:0003029 ! stria terminalis [Term] id: UBERON:0001881 name: island of calleja alt_id: UBERON:FMA_61888-MA_0000977 def: "The islands of Calleja (IC, ISC, or IClj) are a group of neural granule cells located within the ventral striatum in the brains of most animals. This region of the brain is part of the limbic system, where it aids in the reinforcing effects of reward-like activities. Within most species, the islands are specifically located within the olfactory tubercle; however, in primates these islands are located within the nucleus accumbens, the reward center of the brain, since the olfactory tubercle has practically disappeared in the brains of primates. Both of these structures have been implicated in the processing of incentives as well as addictions to drugs. Projections to and from the islands supplement this knowledge with their involvement in the reward pathways for both cocaine and amphetamines. [WP,unvetted]." [Wikipedia:Islands_of_Calleja] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "calleja island" EXACT [] synonym: "islands of calleja" EXACT [] xref: ABA:isl xref: BM:Tel-ISC xref: FMA:61888 xref: GAID:632 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c0/Islands_of_Calleja_Rat.jpg/200px-Islands_of_Calleja_Rat.jpg xref: MA:0000977 xref: MESH:A.08.186.211.577.699.400 xref: NIF_GrossAnatomy:birnlex_1113 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0009663 ! implied link automatically realized ! telencephalic nucleus relationship: part_of UBERON:0001883 ! anterior perforated substance [Term] id: UBERON:0001882 name: nucleus accumbens alt_id: UBERON:FMA_61889-MA_0000892 def: "a collection of pleomorphic cells in the caudal part of the anterior horn of the lateral ventricle, in the region of the olfactory tubercle, lying between the head of the caudate nucleus and the anterior perforated substance. It is part of the ventral striatum, a composite structure considered part of the basal ganglia[GO]." [GO:0021768, Wikipedia:Nucleus_accumbens] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "accumbens nucleus" EXACT [] synonym: "colliculus of caudate nucleus" EXACT [] synonym: "nucleus accumbens septi" EXACT [] xref: ABA:ACB xref: BM:Ac xref: BTO:0001862 xref: EFO:0000906 xref: FMA:61889 xref: GAID:672 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/93/Circuit_du_syst%C3%A8me_de_recompense.jpg/200px-Circuit_du_syst%C3%A8me_de_recompense.jpg xref: MA:0000892 xref: MAT:0000512 xref: MESH:A.08.186.211.730.885.105.683 xref: ncithesaurus:Accumbens_Nucleus xref: NIF_GrossAnatomy:birnlex_727 xref: SCTID:427667007 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0009663 ! implied link automatically realized ! telencephalic nucleus relationship: part_of UBERON:0000349 {source="FMA", source="GO"} ! limbic system relationship: part_of UBERON:0001869 ! cerebral hemisphere relationship: part_of UBERON:0005403 {source="MA"} ! ventral striatum relationship: spatially_disjoint_from UBERON:0001883 {source="ABA"} ! anterior perforated substance [Term] id: UBERON:0001883 name: anterior perforated substance alt_id: UBERON:FMA_61891-MA_0000976 def: "Subdivision of telencephalon which is a region on the ventro-medial aspect of the telencephalon penetrated by numerous blood vessels. It is bounded by the optic tract posteriorly and the olfactory trigone anteriorly." [Wikipedia:Anterior_perforated_substance] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "anterior perforated area" EXACT [] synonym: "anterior perforated space" EXACT [] synonym: "olfactory area (mai)" EXACT [] synonym: "olfactory tubercle" EXACT [] synonym: "tuberculum olfactorium" EXACT [FMA:61891, FMA:TA] xref: ABA:OT xref: BM:Tel-OLT xref: BTO:0001869 xref: EV:0100177 xref: FMA:61891 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4d/Gray732.png/200px-Gray732.png xref: MA:0000976 xref: NIF_GrossAnatomy:birnlex_1096 xref: SCTID:369108006 is_a: UBERON:0004732 ! implied link automatically realized ! segmental subdivision of nervous system is_a: UBERON:0005813 ! tubercle relationship: part_of UBERON:0001869 ! cerebral hemisphere relationship: part_of UBERON:0002894 ! olfactory cortex relationship: spatially_disjoint_from UBERON:0001882 {source="ABA"} ! nucleus accumbens [Term] id: UBERON:0001884 name: phrenic nerve alt_id: UBERON:FMA_6191-MA_0001170 def: "The phrenic nerve arises from the third, fourth, and fifth cervical spinal nerves (C3-C5) in humans. [WP,unvetted]." [Wikipedia:Phrenic_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "diaphragmatic nerve" RELATED [BTO:0001063] synonym: "nervus phrenicus" RELATED [BTO:0001063] synonym: "phrenic" RELATED [BTO:0001063] xref: BTO:0001063 xref: EHDAA:4677 xref: EMAPA:17813 xref: FMA:6191 xref: GAID:848 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3c/Gray806.png/200px-Gray806.png xref: MA:0001170 xref: MESH:A.08.800.800.720.150.700 xref: ncithesaurus:Phrenic_Nerve xref: OG:0000728 xref: OpenCyc:Mx4rvtmdUJwpEbGdrcN5Y29ycA xref: SCTID:280344009 is_a: UBERON:0002003 ! peripheral nerve is_a: UBERON:0003443 ! implied link automatically realized ! thoracic cavity nerve relationship: part_of UBERON:0002224 ! thoracic cavity [Term] id: UBERON:0001885 name: dentate gyrus of hippocampal formation alt_id: UBERON:FMA_61922-MA_0000190 def: "The dentate gyrus is one of two interlocking gyri of the hippocampus. It contains granule cells, which project to the pyramidal cells and interneurons of the CA3 region of the ammon gyrus[GO]." [Wikipedia:Dentate_gyrus] comment: BTO says dentate gyrus = fascia dentata + hilus. Note that GO classifies dentate gyrus development under hippocampus development subset: uberon_slim synonym: "area dentata" EXACT [] synonym: "dentate gyrus" EXACT [] synonym: "fascia dentata" NARROW [] synonym: "gyrus dentatus" RELATED [BTO:0002496] synonym: "hippocampal dentate gyrus" RELATED [BTO:0002496] xref: ABA:DG xref: BM:Tel-DG xref: BTO:0002496 xref: BTO:0002615 xref: EFO:0001366 xref: EMAPA:19037 xref: FMA:61922 xref: GAID:624 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ab/HippocampalRegions.jpg/200px-HippocampalRegions.jpg xref: MA:0000190 xref: MESH:A.08.186.211.577.405.200 xref: ncithesaurus:Dentate_Gyrus xref: NIF_GrossAnatomy:birnlex_1178 xref: SCTID:279211002 is_a: UBERON:0000200 {source="FMA"} ! gyrus relationship: part_of UBERON:0002421 {source="MA"} ! hippocampal formation relationship: spatially_disjoint_from UBERON:0001954 {source="ABA"} ! Ammon's horn relationship: spatially_disjoint_from UBERON:0002601 {source="ABA"} ! fasciolar gyrus [Term] id: UBERON:0001886 name: choroid plexus alt_id: UBERON:FMA_61934-MA_0000823-ZFA_0001443 def: "A tuft of capillaries that project into the ventricles of the brain and secretes cerebral spinal fluid. The choroid plexus is covered by a cuboidal epithelium which maintains the integrity of the blood-brain barrier[?]. Fringe of the tela choroidea of the brain ventricles[MP]. The choroid plexus is the area on the ventricles of the brain where cerebrospinal fluid (CSF) is produced by modified ependymal cells[WP]." [MP:0000820, Wikipedia:Choroid_plexus, ZFIN:curator] comment: TODO - check relationship to ventricle. Check subclass - ZFA says vasculature. Note that FMA:61934 (choroid plexus of cerebral hemisphere) has exact synonym 'choroid plexus' but it is not clear that this belongs here, as the fourth ventricle is not in the cerbral hemisphere subset: uberon_slim subset: vertebrate_core synonym: "chorioid plexus" EXACT [FMA:61934] synonym: "plexus choroideus" EXACT [FMA:61934, FMA:TA] xref: BTO:0000258 xref: EFO:0001915 xref: FMA:61934 xref: GAID:607 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b9/Gray708.svg/200px-Gray708.svg.png xref: MA:0000823 xref: MESH:A.08.186.211.276.298 xref: ncithesaurus:Choroid_Plexus xref: OG:0001377 xref: SCTID:264450003 xref: TAO:0001443 xref: ZFA:0001443 is_a: UBERON:0003947 ! implied link automatically realized ! brain ventricle/choroid plexus is_a: UBERON:0005284 ! implied link automatically realized ! brain vasculature is_a: UBERON:0005629 ! vascular plexus relationship: part_of UBERON:0004086 ! brain ventricle [Term] id: UBERON:0001887 name: internal capsule alt_id: UBERON:FMA_61950-MA_0002748 def: "Internal capsule is an organ subdivision of the telencephalon which is made up primarily of myelinated axonal neural tissue (white matter). The internal capsule is a major set of fiber bundles lateral to the thalamus and caudate nucleus and medial to the putamen and globus pallidus. It projects dorsally to the white matter underlying the cerebral cortex." [Wikipedia:Internal_capsule] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "internal capsule radiations" EXACT [] xref: BM:IC xref: EMAPA:18206 xref: FMA:61950 xref: GAID:685 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/91/Telencephalon-Horiconatal.jpg/200px-Telencephalon-Horiconatal.jpg xref: MA:0002748 xref: MESH:A.08.186.211.730.885.435 xref: ncithesaurus:Internal_Capsule xref: NIF_GrossAnatomy:birnlex_1659 is_a: UBERON:0002437 ! cerebral white matter relationship: part_of UBERON:0001869 ! cerebral hemisphere [Term] id: UBERON:0001888 name: lateral olfactory stria alt_id: UBERON:FMA_61971-ZFA_0000229 def: "The olfactory tract is a narrow white band, triangular on coronal section, the apex being directed upward. It lies in the olfactory sulcus on the inferior surface of the frontal lobe, and divides posteriorly into two striæ, a medial and a lateral. The lateral olfactory stria is directed across the lateral part of the anterior perforated substance and then bends abruptly medialward toward the uncus of the hippocampal gyrus. The medial olfactory stria turns medialward behind the parolfactory area and ends in the subcallosal gyrus; in some cases a small intermediate stria is seen running backward to the anterior perforated substance. [WP,unvetted]." [Wikipedia:Lateral_olfactory_stria] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "lateral olfactory tract" EXACT [] synonym: "tractus olfactorius lateralis" EXACT [ZFA:0000229] xref: BM:Tel-LOT xref: EV:0100175 xref: FMA:61971 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4d/Gray732.png/200px-Gray732.png xref: NIF_GrossAnatomy:birnlex_1559 xref: TAO:0000229 xref: ZFA:0000229 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001893 ! telencephalon [Term] id: UBERON:0001889 name: trunk of phrenic nerve alt_id: UBERON:FMA_6198-MA_0001177 comment: This class was created automatically from a combination of ontologies synonym: "phrenic nerve trunk" EXACT [] synonym: "phrenic neural trunk" EXACT [] xref: EHDAA2:0001463 xref: FMA:6198 xref: MA:0001177 is_a: UBERON:0001147 ! trunk of peripheral nerve relationship: part_of UBERON:0001884 ! phrenic nerve [Term] id: UBERON:0001890 name: forebrain alt_id: UBERON:FMA_61992-MA_0000170-MIAA_0000105-XAO_0000011-ZFA_0000109 def: "The most anterior region the brain including both the telencephalon and diencephalon." [Wikipedia:Forebrain, ZFIN:ZDB-PUB-961014-576] subset: uberon_slim subset: vertebrate_core synonym: "prosencephalon" RELATED [] xref: AAO:0010147 xref: BTO:0000478 xref: EFO:0000909 xref: EHDAA:3470 xref: EHDAA2:0000556 xref: EMAPA:16895 xref: FMA:61992 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/54/EmbryonicBrain.svg/200px-EmbryonicBrain.svg.png xref: MA:0000170 xref: MAT:0000105 xref: MESH:A.08.186.211.730 xref: MIAA:0000105 xref: ncithesaurus:Fore-Brain xref: ncithesaurus:Prosencephalon xref: NIF_GrossAnatomy:birnlex_1509 xref: OG:0000383 xref: SCTID:362291003 xref: TAO:0000109 xref: XAO:0000011 xref: ZFA:0000109 is_a: UBERON:0002616 ! regional part of brain relationship: develops_from UBERON:0003080 ! anterior neural tube relationship: part_of UBERON:0000955 ! brain [Term] id: UBERON:0001891 name: midbrain alt_id: UBERON:FMA_61993-MA_0000207-MIAA_0000106-XAO_0000014-ZFA_0000128 def: "Organ component of neuraxis that has as its parts the tectum, cerebral peduncle, midbrain tegmentum and cerebral aqueduct[FMA]. The brain region between the forebrain anteriorly and the hindbrain posteriorly, including the tectum dorsally and the midbrain tegmentum ventrally[ZFA]. The midbrain is the middle division of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes a ventral part containing the cerebral peduncles and a dorsal tectum containing the corpora quadrigemina and that surrounds the aqueduct of Sylvius connecting the third and fourth ventricles)[GO]." [FMA:61993, GO:0030901, Wikipedia:Midbrain, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "mesencephalon" RELATED [] synonym: "midbrain vesicle" RELATED [] xref: AAO:0010149 xref: ABA:MB xref: BM:MB xref: BTO:0000138 xref: EFO:0000919 xref: EHDAA:3694 xref: EHDAA2:0001104 xref: EHDAA2:0001162 xref: EMAPA:16974 xref: EV:0100242 xref: FMA:61993 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f9/Human_brain_inferior_view_description.JPG/200px-Human_brain_inferior_view_description.JPG xref: MA:0000207 xref: MAT:0000106 xref: MESH:A.08.186.211.132.659 xref: MIAA:0000106 xref: ncithesaurus:Mesencephalon xref: NIF_GrossAnatomy:birnlex_1667 xref: OG:0000069 xref: OpenCyc:Mx4rvsBUqpwpEbGdrcN5Y29ycA xref: SCTID:279099009 xref: TAO:0000128 xref: XAO:0000014 xref: ZFA:0000128 is_a: UBERON:0002616 ! regional part of brain relationship: develops_from UBERON:0003080 ! anterior neural tube relationship: part_of UBERON:0002298 {source="ABA"} ! brainstem relationship: spatially_disjoint_from UBERON:0001894 {source="ABA"} ! diencephalon relationship: spatially_disjoint_from UBERON:0002028 {source="ABA"} ! hindbrain [Term] id: UBERON:0001892 name: rhombomere alt_id: UBERON:FMA_61998-MIAA_0000272-ZFA_0001064 def: "A segment of the developing hindbrain[ZFA]. In the vertebrate embryo, a rhombomere is a transiently divided segment of the developing neural tube, within the hindbrain region (a neuromere) in the area that will eventually become the rhombencephalon. The rhombomeres appear as a series of slightly constricted swellings in the neural tube, caudal to the cephalic flexure. In human embryonic development, the rhombomeres are present by day 29[WP]." [Wikipedia:Rhombomere, ZFIN:curator] subset: uberon_slim subset: vertebrate_core synonym: "future rhombencephalon" RELATED [MIAA:0000272] synonym: "hindbrain segment" BROAD [ZFA:0001064] synonym: "rhombomere" EXACT [] synonym: "segment of hindbrain" BROAD [ZFA:0001064] xref: EFO:0003617 xref: EHDAA2:0000669 xref: EMAPA:16148 xref: EMAPA:16478 xref: MAT:0000272 xref: MIAA:0000272 xref: OG:0000672 xref: TAO:0001064 xref: XAO:0004079 xref: ZFA:0001064 is_a: UBERON:0004731 ! implied link automatically realized ! neuromere is_a: UBERON:0004733 ! implied link automatically realized ! segmental subdivision of hindbrain relationship: part_of UBERON:0002028 intersection_of: UBERON:0004731 ! neuromere intersection_of: part_of UBERON:0002028 ! hindbrain [Term] id: UBERON:0001893 name: telencephalon alt_id: UBERON:FMA_6200-FMA_62000-MA_0000183-MIAA_0000421-XAO_0000012-ZFA_0000079 def: "Organ component of neuraxis that has as its parts the cerebral cortex, cerebral white matter, basal ganglia, septum and fornix, as well as subcortical gray and white matter structures[FMA]." [FMA:62000, Wikipedia:Telencephalon] comment: The telencephalon is the name for a large region within the brain that is attributed many functions. Many people refer to it as the cerebrum; however, it is technically referred to as the telencephalon. As a more technical definition, the telencephalon refers to the cerebral hemispheres and other, smaller structures within the brain, although the telencephalon is one of the larger divisions (in terms of number). It is the anterior-most embryological division of the brain that develops from the prosencephalon. The telencephalon is composed of the following sub-regions; Limbic system; Cerebral cortex or cortices of the cerebral hemispheres, Basal ganglia, Olfactory bulb. The telencephalon comprises what most people think of as the 'brain' It lies on top of the brainstem and is the largest and most well-developed of the five major divisions of the brain. The telencephalon is the newest structure in the phylogenetic sense, with mammals having the largest and most well-developed among all species. It emerges from the prosencephalon, the first of three vesicles that form from the embryonic neural tube (Christine Fennema-Notestine, NIF_GrossAnatomy:birnlex_1115). subset: uberon_slim subset: vertebrate_core synonym: "cerebrum" EXACT [http://en.wikipedia.org/wiki/Talk\:Cerebrum] synonym: "endbrain" EXACT [Swanson:2004] synonym: "telencephalon" EXACT [] xref: AAO:0010479 xref: ABA:CH xref: BM:Tel xref: BTO:0000239 xref: EFO:0000912 xref: EHDAA2:0001982 xref: EMAPA:16652 xref: EMAPA:16910 xref: EV:0100165 xref: FMA:62000 xref: GAID:621 xref: MA:0000183 xref: MAT:0000421 xref: MESH:A.08.186.211.730.885 xref: MIAA:0000421 xref: NIF_GrossAnatomy:birnlex_1115 xref: OG:0000283 xref: SCTID:263353005 xref: TAO:0000079 xref: XAO:0000012 xref: ZFA:0000079 is_a: UBERON:0002780 ! regional part of forebrain relationship: part_of UBERON:0001890 ! forebrain relationship: spatially_disjoint_from UBERON:0002037 {source="ABA"} ! cerebellum [Term] id: UBERON:0001894 name: diencephalon alt_id: UBERON:FMA_62001-MA_0000171-MIAA_0000420-XAO_0000013-ZFA_0000101 def: "Organ component of neuraxis that has as its parts the epithalamus, thalamus, hypothalamus, subthalamus[FMA]. The more posterior and ventral of two forebrain neuromeres, the other being the telencephalon; major derivatives are the eye cups, the brain pretectal region, the thalamus, hypothalamus, and epithalamus (including the habenula and epiphysis). Kimmel et al, 1995." [FMA:62001, Wikipedia:Diencephalon, ZFIN:curator] comment: Note that in ABA, this is part of the brain stem subset: uberon_slim subset: vertebrate_core synonym: "between brain" EXACT [] synonym: "betweenbrain" RELATED [BTO:0000342] synonym: "interbrain" EXACT [Swanson:2004] synonym: "mature diencephalon" EXACT [FMA:62001] xref: AAO:0010481 xref: ABA:IB xref: BM:Die xref: BTO:0000342 xref: EFO:0000911 xref: EHDAA:1969 xref: EHDAA:2645 xref: EHDAA:3472 xref: EHDAA2:0000385 xref: EMAPA:16641 xref: EMAPA:16896 xref: EV:0100194 xref: FMA:62001 xref: GAID:618 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/54/EmbryonicBrain.svg/200px-EmbryonicBrain.svg.png xref: MA:0000171 xref: MAT:0000420 xref: MESH:A.08.186.211.730.385 xref: MIAA:0000420 xref: ncithesaurus:Diencephalon xref: NIF_GrossAnatomy:birnlex_1503 xref: OG:0000318 xref: OpenCyc:Mx4rwC-V0JwpEbGdrcN5Y29ycA xref: SCTID:279328001 xref: TAO:0000101 xref: XAO:0000013 xref: ZFA:0000101 is_a: UBERON:0002780 ! regional part of forebrain relationship: part_of UBERON:0001890 ! forebrain relationship: spatially_disjoint_from UBERON:0001891 {source="ABA"} ! midbrain relationship: spatially_disjoint_from UBERON:0002028 {source="ABA"} ! hindbrain [Term] id: UBERON:0001895 name: metencephalon alt_id: UBERON:FMA_62003-MA_0000197 def: "Rostral segment of the hindbrain that has as its parts the pons (where present) and the cerebellum." [Wikipedia:Metencephalon] comment: the terms metencephalon and myelencephalon are only meaningful in mammals and birds[Neuroanatomy of the Zebrafish Brain]. In zebrafish, with the exception of the cerebellum, the ventral remainder of the metencephalon can be separated only arbitrarily from the more caudal myelencephalic portion of the medulla oblongata and thus these are not distinguished in ZFA[ZFA]. subset: uberon_slim synonym: "epencephalon-2" EXACT [] xref: BTO:0000673 xref: EHDAA:5498 xref: EHDAA2:0001149 xref: EMAPA:17071 xref: FMA:62003 xref: GAID:594 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/54/EmbryonicBrain.svg/200px-EmbryonicBrain.svg.png xref: MA:0000197 xref: MESH:A.08.186.211.132.810.428 xref: NIF_GrossAnatomy:birnlex_965 xref: OG:0000741 is_a: UBERON:0000063 ! organ segment is_a: UBERON:0004733 ! implied link automatically realized ! segmental subdivision of hindbrain relationship: part_of UBERON:0002028 ! hindbrain [Term] id: UBERON:0001896 name: medulla oblongata alt_id: UBERON:FMA_62004-MA_0000206-MIAA_0000111-XAO_0003100-ZFA_0000545 def: "Organ component of neuraxis that has as its parts the medullary reticular formation, inferior olivary complex and cochlear nuclear complex, among other structures[FMA]. The medulla oblongata lies directly above the spinal cord and controls vital autonomic functions such as digestion, breathing and the control of heart rate[GO]." [FMA:62004, GO:0021550, Wikipedia:Medulla_oblongata] subset: uberon_slim subset: vertebrate_core synonym: "bulb" BROAD [] synonym: "bulbus" EXACT [FMA:62004, FMA:TA] synonym: "medulla" BROAD [ABA:MY] synonym: "metepencephalon" RELATED [FMA:62004] xref: AAO:0010486 xref: ABA:MY xref: BTO:0000041 xref: EFO:0000924 xref: EHDAA:7588 xref: EHDAA2:0001088 xref: EMAPA:17550 xref: EV:0100275 xref: FMA:62004 xref: GAID:590 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6b/Illu_pituitary_pineal_glands.jpg/200px-Illu_pituitary_pineal_glands.jpg xref: MA:0000206 xref: MAT:0000111 xref: MAT:0000367 xref: MESH:A.08.186.211.132.810.406 xref: MIAA:0000111 xref: ncithesaurus:Medulla_Oblongata xref: NIF_GrossAnatomy:birnlex_957 xref: OG:0000181 xref: OpenCyc:Mx4rvVjxSJwpEbGdrcN5Y29ycA xref: OpenCyc:Mx4rwCqnXJwpEbGdrcN5Y29ycA xref: SCTID:279104005 xref: TAO:0000545 xref: XAO:0003100 xref: ZFA:0000545 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0002028 ! hindbrain relationship: part_of UBERON:0002298 ! brainstem relationship: part_of UBERON:0005290 ! myelencephalon relationship: spatially_disjoint_from UBERON:0000988 {source="ABA"} ! pons [Term] id: UBERON:0001897 name: thalamus alt_id: UBERON:FMA_62007-MA_0000179-MIAA_0000109-ZFA_0001215 def: "A midline paired symmetrical structure within the brains of vertebrates, including humans. It is situated between the cerebral cortex and midbrain, both in terms of location and neurological connections. Its function includes relaying sensation, special sense and motor signals to the cerebral cortex, along with the regulation of consciousness, sleep and alertness. The thalamus surrounds the third ventricle. It is the main product of the embryonic diencephalon." [Wikipedia:Thalamus] comment: MA and ZFA think there is a distinct dorsal thalamus, but FMA says its an exact synonym subset: uberon_slim subset: vertebrate_core synonym: "dorsal thalamus" RELATED [FMA:62007] synonym: "dorsal thalamus (anthoney)" EXACT [FMA:62007] synonym: "thalamus dorsalis" RELATED [BTO:0001365] xref: AAO:0010483 xref: ABA:TH xref: BTO:0001365 xref: EFO:0000910 xref: EMAPA:17540 xref: EV:0100195 xref: FMA:62007 xref: GAID:656 xref: galen:Thalamus xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/ce/Brain_chrischan_thalamus.jpg/200px-Brain_chrischan_thalamus.jpg xref: MA:0000179 xref: MAT:0000109 xref: MESH:A.08.186.211.730.385.826 xref: MIAA:0000109 xref: ncithesaurus:Thalamus xref: NIF_GrossAnatomy:birnlex_954 xref: OG:0000657 xref: OpenCyc:Mx4rwMPQ65wpEbGdrcN5Y29ycA xref: SCTID:244433007 xref: TAO:0001215 xref: ZFA:0001215 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001894 ! diencephalon relationship: spatially_disjoint_from UBERON:0001898 {source="ABA"} ! hypothalamus [Term] id: UBERON:0001898 name: hypothalamus alt_id: UBERON:FMA_62008-MA_0000173-MIAA_0000112-ZFA_0000032 def: "A specialized brain region of the ventral diencephalon arising near the end of the segmentation period; the embryonic hypothalamic region will give rise to the posterior pituitary gland as well as a number of brain nuclei. [ZFA]. One of the most important functions of the hypothalamus is to link the nervous system to the endocrine system via the pituitary gland (hypophysis).[Wikipedia]." [Wikipedia:Hypothalamus, ZFIN:curator] comment: Taxon notes: all vertebrates contain a hypothalamus[WP]. subset: uberon_slim subset: vertebrate_core synonym: "preoptico-hypothalamic area" EXACT [] synonym: "preoptico-hypothalamic region" EXACT [] xref: AAO:0010484 xref: ABA:HY xref: BM:Die-Hy xref: BTO:0000614 xref: EFO:0000107 xref: EHDAA:5446 xref: EHDAA2:0000802 xref: EMAPA:17536 xref: EV:0100225 xref: FMA:62008 xref: GAID:460 xref: galen:Hypothalamus xref: MA:0000173 xref: MAT:0000112 xref: MESH:A.08.186.211.577.482 xref: MIAA:0000112 xref: ncithesaurus:Hypothalamus xref: NIF_GrossAnatomy:birnlex_734 xref: OG:0000179 xref: OpenCyc:Mx4rwEgr9JwpEbGdrcN5Y29ycA xref: SCTID:264483005 xref: TAO:0000032 xref: XAO:0004070 xref: ZFA:0000032 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0000349 ! limbic system relationship: part_of UBERON:0001894 ! diencephalon relationship: spatially_disjoint_from UBERON:0001897 {source="ABA"} ! thalamus [Term] id: UBERON:0001899 name: epithalamus alt_id: UBERON:FMA_62009-MA_0000172-MIAA_0000422-ZFA_0000509 def: "The epithalamus is the small dorsomedial area of the thalamus including the habenular nuclei and associated fiber bundles, the pineal body, and the epithelial roof of the third ventricle[GO]. a dorsal posterior segment of the diencephalon (a segment in the middle of the brain also containing the hypothalamus and the thalamus) which includes the habenula, the stria medullaris and the pineal body. Its function is the connection between the limbic system to other parts of the brain[WP] Some functions of its components include the secretion of melatonin by the pineal gland. " [Wikipedia:Epithalamus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core xref: AAO:0010482 xref: ABA:EPI xref: BM:Die-Epi xref: BTO:0000175 xref: EFO:0000918 xref: EHDAA:5433 xref: EHDAA2:0000448 xref: EMAPA:17532 xref: EV:0100220 xref: FMA:62009 xref: GAID:455 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Epithalamus.png/200px-Epithalamus.png xref: MA:0000172 xref: MAT:0000422 xref: MESH:A.08.186.211.577.200 xref: MIAA:0000422 xref: ncithesaurus:Epithalamus xref: NIF_GrossAnatomy:birnlex_1710 xref: OG:0000178 xref: OpenCyc:Mx4rvneLQpwpEbGdrcN5Y29ycA xref: SCTID:281487003 xref: TAO:0000509 xref: ZFA:0000509 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001894 ! diencephalon relationship: spatially_disjoint_from UBERON:0001903 {source="ABA"} ! thalamic reticular nucleus relationship: spatially_disjoint_from UBERON:0002733 {source="ABA"} ! intralaminar nuclear group relationship: spatially_disjoint_from UBERON:0002736 {source="ABA"} ! lateral nuclear group [Term] id: UBERON:0001900 name: subthalamus alt_id: UBERON:FMA_62010-MA_0000181-ZFA_0000458 def: "Anterior part of the diencephalon that lies between the thalamus, hypothalamus, and tegmentum of the mesencephalon, including subthalamic nucleus, zona incerta, the fields of Forel, and the nucleus of ansa lenticularis[GO]." [GO:0021539, Wikipedia:Subthalamus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "prethalamus" RELATED [] synonym: "subthalamic region" EXACT [] synonym: "thalamus ventralis" EXACT [NIF_GrossAnatomy:birnlex_708] synonym: "ventral thalamus" EXACT [] xref: BM:Die-VTh xref: EV:0100223 xref: FMA:62010 xref: GAID:653 xref: MA:0000181 xref: MESH:A.08.186.211.730.385.800 xref: ncithesaurus:Ventral_Thalamus xref: NIF_GrossAnatomy:birnlex_708 xref: SCTID:279332007 xref: TAO:0000458 xref: ZFA:0000458 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001897 ! thalamus [Term] id: UBERON:0001901 name: epithelium of trachea alt_id: UBERON:0003227 alt_id: UBERON:FMA_62015-MA_0001862 comment: This class was created automatically from a combination of ontologies synonym: "epithelial tissue of trachea" EXACT [OBOL:automatic] synonym: "epithelial tissue of windpipe" EXACT [OBOL:automatic] synonym: "epithelium of windpipe" EXACT [OBOL:automatic] synonym: "trachea epithelial tissue" EXACT [OBOL:automatic] synonym: "trachea epithelium" EXACT [] synonym: "tracheal epithelium" EXACT [] synonym: "windpipe epithelial tissue" EXACT [OBOL:automatic] synonym: "windpipe epithelium" EXACT [OBOL:automatic] xref: BTO:0001389 xref: EHDAA:5007 xref: EHDAA2:0002069 xref: EMAPA:16855 xref: EMAPA:18409 xref: FMA:62015 xref: MA:0001862 xref: ncithesaurus:Tracheal_Epithelium xref: OG:0001045 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000485 ! simple columnar epithelium is_a: UBERON:0004815 ! implied link automatically realized ! lower respiratory tract epithelium relationship: part_of UBERON:0003126 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0003126 ! trachea relationship: develops_from UBERON:0003258 ! endoderm of foregut [Term] id: UBERON:0001902 name: epithelium of small intestine alt_id: UBERON:FMA_62017-MA_0001553 def: "An epithelium that is part of a small intestine [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies subset: vertebrate_core synonym: "epithelial tissue of small bowel" EXACT [OBOL:automatic] synonym: "epithelial tissue of small intestine" EXACT [OBOL:automatic] synonym: "epithelium of small bowel" EXACT [OBOL:automatic] synonym: "mid intestine epithelium" EXACT [ZFA:0005127] synonym: "small bowel epithelial tissue" EXACT [OBOL:automatic] synonym: "small bowel epithelium" EXACT [OBOL:automatic] synonym: "small intestinal epithelium" EXACT [] synonym: "small intestine epithelial tissue" EXACT [OBOL:automatic] synonym: "small intestine epithelium" EXACT [] xref: BTO:0001258 xref: FMA:62017 xref: MA:0001553 xref: SCTID:45480009 xref: ZFA:0005127 is_a: UBERON:0001277 ! intestinal epithelium relationship: part_of UBERON:0002108 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002108 ! small intestine relationship: part_of UBERON:0001204 ! mucosa of small intestine [Term] id: UBERON:0001903 name: thalamic reticular nucleus alt_id: UBERON:FMA_62026-MA_0000876 def: "The thalamic reticular nucleus is part of the ventral thalamus that forms a capsule around the thalamus laterally. It is separated from the thalamus by the external medullary lamina. Reticular cells are GABAergic, and have discoid dendritic arbors in the plane of the nucleus. Thalamic Reticular Nucleus is variously abbreviated TRN, RTN, NRT, and RT. [WP,unvetted]." [Wikipedia:Thalamic_reticular_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "nucleus reticularis thalami" EXACT [FMA:62026, FMA:TA] synonym: "reticular nuclear group" EXACT [] synonym: "reticular nucleus of thalamus" EXACT [] synonym: "reticular nucleus of the thalamus" EXACT [] synonym: "reticular nucleus-2" EXACT [] synonym: "reticular thalamic nucleus" EXACT [] xref: ABA:RT xref: BM:Die-VTh-R xref: EV:0100214 xref: FMA:62026 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ab/Constudthal.gif/200px-Constudthal.gif xref: MA:0000876 xref: NIF_GrossAnatomy:birnlex_1721 xref: SCTID:279164008 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0007692 ! implied link automatically realized ! nucleus of thalamus relationship: part_of UBERON:0001900 ! subthalamus relationship: spatially_disjoint_from UBERON:0001899 {source="ABA"} ! epithalamus relationship: spatially_disjoint_from UBERON:0002733 {source="ABA"} ! intralaminar nuclear group relationship: spatially_disjoint_from UBERON:0002736 {source="ABA"} ! lateral nuclear group [Term] id: UBERON:0001904 name: habenula alt_id: UBERON:FMA_62032-MA_0000830-ZFA_0000213 def: "Habenula is a segment of the epithalamus that has as its parts the lateral and medial habenular nuclei and the habenular commissure. // The habenula relays impulses from limbic areas of the telencephalon to an unpaired midbrain nucleus, the interpeduncular nucleus." [Wikipedia:Habenula, ZFIN:curator] comment: TODO - add separate term for nucleus (e.g. BTO:0003685 habenular nucleus) subset: uberon_slim subset: vertebrate_core synonym: "habenulae" RELATED [] synonym: "habenular nuclei" RELATED [] synonym: "habenular nucleus" RELATED [] xref: BTO:0003684 xref: EV:0100222 xref: FMA:62032 xref: GAID:619 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d7/Gray715.png/200px-Gray715.png xref: MA:0000830 xref: MESH:A.08.186.211.577.200.360 xref: NIF_GrossAnatomy:birnlex_1611 xref: SCTID:362389008 xref: TAO:0000213 xref: ZFA:0000213 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001899 ! epithalamus [Term] id: UBERON:0001905 name: pineal body alt_id: UBERON:FMA_62033-MA_0000175-XAO_0000160 def: "The pineal body is an unpaired glandular organ subdivision shaped somewhat like a pine cone. It is attached on the midline near the posterior and habenular commissures of the epithalamus." [FMA:62033, Wikipedia:Pineal_body] comment: part of midbrain in HOG, but this is inconsistent with ABA subset: organ_slim subset: uberon_slim subset: vertebrate_core synonym: "corpus pineale" EXACT [] synonym: "epiphysis" RELATED [ZFA:0000019] synonym: "epiphysis cerebri" RELATED [Wikipedia:Epiphysis_cerebri] synonym: "glandula pinealis" EXACT [FMA:62033, FMA:TA] synonym: "pineal gland" EXACT [] synonym: "pineal organ" EXACT [ZFA:0000019] xref: AAO:0010549 xref: ABA:PIN xref: BM:P xref: BTO:0001067 xref: EFO:0000865 xref: EHDAA:7523 xref: EHDAA2:0001466 xref: EMAPA:18778 xref: EV:0100221 xref: FMA:62033 xref: GAID:453 xref: galen:PinealGland xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6b/Illu_pituitary_pineal_glands.jpg/200px-Illu_pituitary_pineal_glands.jpg xref: MA:0000175 xref: MAT:0000448 xref: MESH:A.06.407.635 xref: ncithesaurus:Pineal_Gland xref: NIF_GrossAnatomy:birnlex_1184 xref: OG:0000051 xref: OpenCyc:Mx4rv2FMGpwpEbGdrcN5Y29ycA xref: SCTID:181126002 xref: XAO:0000160 xref: ZFA:0000019 is_a: UBERON:0002368 ! implied link automatically realized ! endocrine gland is_a: UBERON:0002530 ! gland is_a: UBERON:0002757 ! implied link automatically realized ! regional part of epithalamus is_a: UBERON:0003296 ! implied link automatically realized ! gland of diencephalon is_a: UBERON:0005408 ! circumventricular organ relationship: part_of UBERON:0000949 ! endocrine system relationship: part_of UBERON:0001899 {source="multiple"} ! epithalamus relationship: spatially_disjoint_from UBERON:0001941 {source="ABA"} ! lateral habenular nucleus relationship: spatially_disjoint_from UBERON:0001942 {source="ABA"} ! medial habenular nucleus [Term] id: UBERON:0001906 name: subthalamic nucleus alt_id: UBERON:FMA_62035-MA_0000877 def: "The subthalamic nucleus is the lens-shaped nucleus located in the ventral part of the subthalamus on the inner aspect of the internal capsule that is concerned with the integration of somatic motor function[GO]." [Wikipedia:Subthalamic_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "body of forel" EXACT [] synonym: "body of luys" EXACT [] synonym: "Luys' body" RELATED [BTO:0002252] synonym: "nucleus of corpus luysii" EXACT [] synonym: "nucleus of luys" EXACT [] synonym: "nucleus subthalamicus" RELATED [BTO:0002252] synonym: "subthalamic nucleus (of luys)" EXACT [] xref: ABA:STN xref: BM:Die-Sb xref: BTO:0002252 xref: EFO:0001392 xref: EV:0100224 xref: FMA:62035 xref: GAID:655 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/Basal-ganglia-coronal-sections-large.png/200px-Basal-ganglia-coronal-sections-large.png xref: MA:0000877 xref: MESH:A.08.186.211.730.385.800.800 xref: ncithesaurus:Subthalamic_Nucleus xref: NIF_GrossAnatomy:nlx_anat_1010002 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0007692 ! implied link automatically realized ! nucleus of thalamus relationship: part_of UBERON:0001900 ! subthalamus relationship: spatially_disjoint_from UBERON:0001907 {source="ABA"} ! zona incerta relationship: spatially_disjoint_from UBERON:0001931 {source="ABA"} ! lateral preoptic nucleus relationship: spatially_disjoint_from UBERON:0001933 {source="ABA"} ! retrochiasmatic area relationship: spatially_disjoint_from UBERON:0002430 {source="ABA"} ! lateral hypothalamic area [Term] id: UBERON:0001907 name: zona incerta alt_id: UBERON:FMA_62038-MA_0000878 def: "The zona incerta is a horizontally elongated region of gray matter cells in the subthalamus below the thalamus. Its connections project extensively over the brain from the cerebral cortex down into the spinal cord. Its function is unknown though several have been proposed related to “limbic–motor integration” such as controlling visceral activity and pain; gating sensory input and synchronizing cortical and subcortical brain rhythms. Its dysfunction may play a role in central pain syndrome. It is also been identified as a promising deep brain stimulation therapy target for treating Parkinsons Disease. Its existence was first described by Auguste Forel in 1877 as a “region of which nothing certain can be said”. A hundred and thirty years later in 2007, Nadia Urbain and Martin Deschênes of Université Laval noted that the “zona incerta is among the least studied regions of the brain; its name does not even appear in the index of many textbooks. ” [WP,unvetted]." [Wikipedia:Zona_incerta] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: ABA:ZI xref: BM:Die-VTh-ZI xref: BTO:0003146 xref: FMA:62038 xref: MA:0000878 xref: SCTID:369186007 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0007692 ! implied link automatically realized ! nucleus of thalamus relationship: part_of UBERON:0001900 ! subthalamus relationship: spatially_disjoint_from UBERON:0001906 {source="ABA"} ! subthalamic nucleus relationship: spatially_disjoint_from UBERON:0001931 {source="ABA"} ! lateral preoptic nucleus relationship: spatially_disjoint_from UBERON:0001933 {source="ABA"} ! retrochiasmatic area relationship: spatially_disjoint_from UBERON:0002430 {source="ABA"} ! lateral hypothalamic area [Term] id: UBERON:0001908 name: optic tract alt_id: UBERON:FMA_62046-ZFA_0000252 def: "Diencephalic white matter (tract) which is comprised of retinal ganglion cell axons after which they have passed through the optic chiasm[ZFA]. Predominantly white matter structure found in diencephalon consisting of fibers originating in the retina. The optic tract is considered to extend from the point of the optic chiasm and terminates largely, although not exclusively, in the lateral geniculate complex. Other fibers end in the superior colliculus and other structures in the diencephalon, midbrain and brainstem (MM)[NIF]." [:NIF_GrossAnatomy, Wikipedia:Optic_tract, ZFIN:curator] comment: editor note: relationships need checking by expert. NIF and ZFA both state part of diencepahalon; MA says part of optic nerve II. in uberon, CNS and PNS are spatially disjoint, and axon tracts are part of the CNS so we make the relationship to CNII 'continuous_with' subset: uberon_slim subset: vertebrate_core synonym: "optic lemniscus" EXACT [] synonym: "visual pathway" RELATED [GAID:735] xref: BM:Tel-OT xref: FMA:62046 xref: GAID:735 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f6/Gray773.png/200px-Gray773.png xref: MA:0001099 xref: MESH:A.08.612.220.860 xref: ncithesaurus:Optic_Tract xref: NIF_GrossAnatomy:birnlex_1684 xref: OG:0001164 xref: SCTID:280952003 xref: TAO:0000252 xref: XAO:0004101 xref: ZFA:0000252 is_a: UBERON:0001018 ! axon tract relationship: continuous_with UBERON:0000941 ! cranial nerve II relationship: continuous_with UBERON:0000959 ! optic chiasma relationship: part_of UBERON:0001894 ! diencephalon relationship: part_of UBERON:0002104 ! visual system [Term] id: UBERON:0001909 name: habenular commissure alt_id: UBERON:FMA_62048-ZFA_0000359 def: "The habenular commissure, is a brain commissure (a band of nerve fibers) situated in front of the pineal gland that connects the habenular nucleus on one side of the diencephalon with that on the other side. The habernular commissure is part of the trigonum habenulæ (a small depressed triangular area situated in front of the superior colliculus and on the lateral aspect of the posterior part of the tænia thalami). The trigonum habenulæ also contains groups of nerve cells termed the ganglion habenulæ. Fibers enter the trigonum habenulæ from the stalk of the pineal gland, and the habenular commissure. Most of the trigonum habenulæ's fibers are, however, directed downward and form a bundle, the fasciculus retroflexus of Meynert, which passes medial to the red nucleus, and, after decussating with the corresponding fasciculus of the opposite side, ends in the interpeduncular ganglion. Nerve cell fibers enter the trigonum habenulæ from the stalk of the pineal body, and the habernular commissure. [WP,unvetted]." [Wikipedia:Habenular_commissure] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "commissura habenularum" EXACT [ZFA:0000359] synonym: "commissure habenularum" EXACT [MP:0008231] xref: BM:Die-Epi-HC xref: FMA:62048 xref: NIF_GrossAnatomy:birnlex_1609 xref: SCTID:279335009 xref: TAO:0000359 xref: ZFA:0000359 is_a: UBERON:0002757 ! implied link automatically realized ! regional part of epithalamus is_a: UBERON:0005341 ! ventral commissure is_a: UBERON:0005970 ! implied link automatically realized ! brain commissure relationship: part_of UBERON:0001904 ! habenula [Term] id: UBERON:0001910 name: medial forebrain bundle alt_id: UBERON:FMA_62064-ZFA_0005111 def: "The Medial forebrain bundle (MFB), is a complex bundle of axons coming from the basal olfactory regions, the periamygdaloid region, and the septal nuclei, and passing to the lateral hypothalamus, with some carrying on into the tegmentum. It contains both ascending and descending fibers. It also represents a part of the mesolimbic pathway, carrying information between the ventral tegmentum and the nucleus accumbens. It is commonly accepted that the MFB is a part of the reward system, involved in the integration of reward and pleasure. Electrical stimulation of the medial forebrain bundle is believed to cause sensations of pleasure. This hypothesis is based upon intracranial self-stimulation (ICSS) studies. Animals will work for MFB ICSS, and humans report that MFB ICSS is intensely pleasurable. This is most likely because the medial forebrain bundle carries information from the ventral tegmental area (VTA) to the nucleus accumbens (nAcc or Acb). The nAcc is a recognized reward center, and activation of the pathway from the VTA to the nAcc is believed to be rewarding, which is why it is sometimes referred to as the hedonic highway. [WP,unvetted]." [Wikipedia:Medial_forebrain_bundle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "medial forebrain fasciculus" EXACT [] synonym: "telencephalic medial fasciculus" EXACT [] xref: FMA:62064 xref: GAID:736 xref: MESH:A.08.612.492 xref: ncithesaurus:Medial_Forebrain_Bundle xref: NIF_GrossAnatomy:birnlex_908 xref: TAO:0005111 xref: ZFA:0005111 is_a: UBERON:0005838 ! fasciculus of brain relationship: part_of UBERON:0000955 ! brain [Term] id: UBERON:0001911 name: mammary gland alt_id: UBERON:FMA_62088-MA_0000145-MIAA_0000073-Mammary def: "The specialized accessory gland of the skin of female mammals that secretes milk. In the human female, it is a compound tubuloalveolar gland composed of 15 to 25 lobes arranged radially about the nipple and separated by connective and adipose tissue, each lobe having its own excretory (lactiferous) duct opening on the nipple. The lobes are subdivided into lobules, with the alveolar ducts and alveoli being the secretory portion of the gland[BTO]. The mouse forms five to six pairs of mammary glands that extend from the neck to the groin." [BTO:0000817, Wikipedia:Mammary_gland] comment: Note that this class corresponds to the generic mammary gland. The human mammary gland is in the thoracic/breast region and is therefore covered by the subclass "thoracic mammary gland" // Males typically only have rudimentary mammary glands, The male Dayak fruit bat has lactating mammary glands. Male lactation occurs infrequently in some species. We make a part_of association to female organism for now as this is the canonical case subset: organ_slim subset: uberon_slim synonym: "Brustdruese" RELATED [BTO:0000817] synonym: "dug" RELATED [Wikipedia:Mammary_gland] synonym: "glandula mammaria" EXACT PLURAL [FMA:57983, FMA:TA] synonym: "lactiferous gland" EXACT [FMA:62088] synonym: "lobe of breast" EXACT [] synonym: "lobe of mammary gland" EXACT [] synonym: "mamma" RELATED [BTO:0000817] xref: BTO:0000817 xref: EFO:0000854 xref: EMAPA:17759 xref: EV:0100125 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Illu_breast_anatomy.jpg/200px-Illu_breast_anatomy.jpg xref: MA:0000145 xref: MAT:0000073 xref: MESH:A.10.336.482 xref: MIAA:0000073 xref: ncithesaurus:Mammary_Gland xref: OG:0000398 xref: OpenCyc:Mx4rvVjVq5wpEbGdrcN5Y29ycA xref: SCTID:361720005 is_a: UBERON:0002365 {source="MA"} ! exocrine gland is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: secretes UBERON:0001913 intersection_of: UBERON:0002530 ! gland intersection_of: secretes UBERON:0001913 ! milk relationship: develops_from UBERON:0005333 ! mammary bud relationship: part_of UBERON:0003100 {notes="see notes"} ! female organism [Term] id: UBERON:0001912 name: lobule of lactiferous gland alt_id: UBERON:FMA_62090-MA_0000793 def: "Organ component of the mammary gland which consists of an aggregate of mammary alveoli that communicate with a lobular lactiferous duct.[FMA]" [FMA:62090] comment: TODO - ensure correct terminology for lobes/lobules. FMA uses lobule for core term, but also has 'set of mammary gland lobes'. subset: uberon_slim synonym: "acinus of mammary gland" EXACT [] synonym: "breast lobe" RELATED [BTO:0004718] synonym: "lactiferous acinus" EXACT [] synonym: "lactiferous gland lobule" EXACT [] synonym: "lactiferous lobule" EXACT [] synonym: "lobe of breast" RELATED [BTO:0004718] synonym: "lobe of mammary gland" RELATED [BTO:0004718] synonym: "lobi glandulae mammariae" RELATED [BTO:0004718] synonym: "lobule of mammary gland" EXACT [] synonym: "lobus glandulae mammariae" RELATED [BTO:0004718] synonym: "mammary acinus" EXACT [] synonym: "mammary gland lobule" EXACT [] xref: BTO:0004718 xref: FMA:62090 xref: MA:0000793 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001911 ! mammary gland [Term] id: UBERON:0001913 name: milk alt_id: UBERON:FMA_62100-MA_0002552-MIAA_0000056 def: "Secretion produced by the mammary gland.[FMA]" [FMA:FMA, Wikipedia:Breast_milk] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "mammary gland milk" EXACT [] xref: BTO:0000868 xref: ENVO:02000031 xref: EV:0100126 xref: FMA:62100 xref: GAID:1230 xref: galen:Milk xref: MA:0002552 xref: MAT:0000056 xref: MESH:A.13.622 xref: MIAA:0000056 xref: ncithesaurus:Milk xref: OG:0001263 xref: OpenCyc:Mx4rvVjGZJwpEbGdrcN5Y29ycA is_a: UBERON:0000456 ! secretion is_a: UBERON:0006539 ! implied link automatically realized ! mammary gland fluid/secretion relationship: secreted_by UBERON:0001911 ! mammary gland [Term] id: UBERON:0001914 name: colostrum alt_id: UBERON:FMA_62101-MA_0002551 def: "Milk produced by the mammary glands of mammals in late pregnancy. Most species will generate colostrum within one day of giving birth." [Wikipedia:Colostrum] comment: in MA this is a sib of mammary gland milk, rather than a subclass, better definitions required subset: uberon_slim xref: BTO:0000276 xref: FMA:62101 xref: GAID:1159 xref: MA:0002551 xref: MESH:A.12.200.194 xref: ncithesaurus:Colostrum is_a: UBERON:0000456 ! secretion is_a: UBERON:0006539 ! implied link automatically realized ! mammary gland fluid/secretion relationship: secreted_by UBERON:0001911 ! mammary gland [Term] id: UBERON:0001915 name: endothelium of capillary alt_id: UBERON:FMA_62114-MA_0000711 def: "An endothelium that is part of a capillary [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "blood capillary endothelium" EXACT [OBOL:automatic] synonym: "capillary endothelium" EXACT [] synonym: "capillary vessel endothelium" EXACT [OBOL:automatic] synonym: "endothelium of blood capillary" EXACT [OBOL:automatic] synonym: "endothelium of capillary vessel" EXACT [OBOL:automatic] xref: BTO:0004954 xref: FMA:62114 xref: MA:0000711 xref: ncithesaurus:Capillary_Endothelium is_a: UBERON:0001986 ! endothelium is_a: UBERON:0004638 ! implied link automatically realized ! blood vessel endothelium relationship: part_of UBERON:0001982 intersection_of: UBERON:0001986 ! endothelium intersection_of: part_of UBERON:0001982 ! capillary relationship: part_of UBERON:0001982 ! capillary [Term] id: UBERON:0001916 name: endothelium of arteriole alt_id: UBERON:FMA_62115-MA_0000705 def: "An endothelium that is part of an arteriole [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "arteriole endothelium" EXACT [] xref: FMA:62115 xref: MA:0000705 xref: ncithesaurus:Arteriole_Endothelium is_a: UBERON:0001917 ! implied link automatically realized ! endothelium of artery is_a: UBERON:0001986 ! endothelium relationship: part_of UBERON:0001980 intersection_of: UBERON:0001986 ! endothelium intersection_of: part_of UBERON:0001980 ! arteriole relationship: part_of UBERON:0001980 ! arteriole [Term] id: UBERON:0001917 name: endothelium of artery alt_id: UBERON:FMA_62116-MA_0000707-XAO_0000357 def: "An endothelium that is part of an artery [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "arterial endothelium" EXACT [] synonym: "artery endothelium" EXACT [] xref: AAO:0011013 xref: BTO:0004757 xref: FMA:62116 xref: MA:0000707 xref: ncithesaurus:Artery_Endothelium xref: OG:0001215 xref: XAO:0000357 is_a: UBERON:0003915 ! endothelial tube is_a: UBERON:0004638 ! implied link automatically realized ! blood vessel endothelium is_a: UBERON:0004700 ! implied link automatically realized ! arterial system endothelium relationship: part_of UBERON:0001637 intersection_of: UBERON:0001986 ! endothelium intersection_of: part_of UBERON:0001637 ! artery [Term] id: UBERON:0001918 name: endothelium of venule alt_id: UBERON:FMA_62117-MA_0000716 def: "An endothelium that is part of a venule [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "venule endothelium" EXACT [] xref: FMA:62117 xref: MA:0000716 xref: ncithesaurus:Venule_Endothelium is_a: UBERON:0001986 ! endothelium is_a: UBERON:0004638 ! implied link automatically realized ! blood vessel endothelium is_a: UBERON:0004701 ! implied link automatically realized ! venous system endothelium relationship: part_of UBERON:0001979 intersection_of: UBERON:0001986 ! endothelium intersection_of: part_of UBERON:0001979 ! venule relationship: part_of UBERON:0001979 ! venule [Term] id: UBERON:0001919 name: endothelium of vein alt_id: UBERON:FMA_62118-MA_0000712 def: "An endothelium that is part of a vein [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "vein endothelium" EXACT [] synonym: "venous endothelium" EXACT [] xref: AAO:0011110 xref: BTO:0004756 xref: FMA:62118 xref: MA:0000712 xref: ncithesaurus:Vein_Endothelium xref: OG:0001216 xref: XAO:0000358 is_a: UBERON:0001986 ! endothelium is_a: UBERON:0004638 ! implied link automatically realized ! blood vessel endothelium is_a: UBERON:0004701 ! implied link automatically realized ! venous system endothelium relationship: part_of UBERON:0001638 intersection_of: UBERON:0001986 ! endothelium intersection_of: part_of UBERON:0001638 ! vein [Term] id: UBERON:0001920 name: paraventricular nucleus of thalamus alt_id: UBERON:FMA_62152-MA_0000866 def: "The nucleus paraventricularis anterior thalami and nuclues paraventricularis posterior thalami, two of the nuclei mediani thalami; they are situated on the dorsomedial wall of the thalamus, juxtaposed to the third ventricle." [Dorlands_Medical_Dictionary:MerckSource] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "nuclei paraventriculares thalami" EXACT [FMA:62152, FMA:TA] synonym: "paraventricular gray" EXACT [] synonym: "paraventricular nuclei" RELATED PLURAL [] synonym: "paraventricular nuclei of thalamus" EXACT PLURAL [] synonym: "paraventricular thalamic nucleus" EXACT [] xref: ABA:PVT xref: BM:Die-Th-Pa xref: BTO:0002460 xref: FMA:62152 xref: http://upload.wikimedia.org/wikipedia/en/thumb/e/ef/PVNss.jpg/200px-PVNss.jpg xref: MA:0000866 xref: NIF_GrossAnatomy:birnlex_764 xref: SCTID:369163000 is_a: UBERON:0002308 {source="FMA"} ! nucleus of brain is_a: UBERON:0007692 ! implied link automatically realized ! nucleus of thalamus relationship: part_of UBERON:0002705 {source="FMA"} ! midline nuclear group relationship: spatially_disjoint_from UBERON:0002992 {source="ABA"} ! paratenial nucleus [Term] id: UBERON:0001921 name: reuniens nucleus alt_id: UBERON:FMA_62153-MA_0000865 comment: This class was created automatically from a combination of ontologies synonym: "medioventral nucleus" EXACT [] synonym: "nucleus reuniens" EXACT [] synonym: "reuniens thalamic nucleus" EXACT [] xref: BTO:0002459 xref: FMA:62153 xref: MA:0000865 xref: NIF_GrossAnatomy:birnlex_770 xref: SCTID:369164006 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0001922 name: parafascicular nucleus alt_id: UBERON:FMA_62166-MA_0000874 comment: This class was created automatically from a combination of ontologies synonym: "nuclei parafasciculares thalami" EXACT [NIF_GrossAnatomy:birnlex_952] synonym: "nucleus parafascicularis" EXACT [NIF_GrossAnatomy:birnlex_952] synonym: "nucleus parafascicularis (hassler)" EXACT [NIF_GrossAnatomy:birnlex_952] synonym: "nucleus parafascicularis thalami" EXACT [NIF_GrossAnatomy:birnlex_952] synonym: "parafascicular nucleus (vogt)" EXACT [NIF_GrossAnatomy:birnlex_952] synonym: "parafascicular nucleus of thalamus" EXACT [] synonym: "parafascicular nucleus of the thalamus" EXACT [NIF_GrossAnatomy:birnlex_952] synonym: "parafascicular thalamic nucleus" EXACT [] xref: ABA:PF xref: BM:Die-Th-Pf xref: EV:0100202 xref: FMA:62166 xref: MA:0000874 xref: ncithesaurus:Parafascicular_Nucleus_of_the_Thalamus xref: NIF_GrossAnatomy:birnlex_952 xref: SCTID:279150008 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0007692 ! implied link automatically realized ! nucleus of thalamus relationship: part_of UBERON:0002733 {source="FMA"} ! intralaminar nuclear group relationship: spatially_disjoint_from UBERON:0001923 {source="ABA"} ! central medial nucleus relationship: spatially_disjoint_from UBERON:0001924 {source="ABA"} ! paracentral nucleus relationship: spatially_disjoint_from UBERON:0002955 {source="ABA"} ! rhomboidal nucleus relationship: spatially_disjoint_from UBERON:0003036 {source="ABA"} ! central lateral nucleus [Term] id: UBERON:0001923 name: central medial nucleus alt_id: UBERON:FMA_62171-MA_0000872 def: "a small cell group in the interthalamic adhesion of the thalamus that occupy the midline region of the internal medullary lamina, between the left and right paracentral nuclei." [MP:0008929] comment: This class was created automatically from a combination of ontologies synonym: "central medial nucleus of thalamus" EXACT [] synonym: "central medial nucleus thalamus (rioch 1928)" EXACT [NIF_GrossAnatomy:birnlex_971] synonym: "central medial thalamic nucleus" EXACT [] synonym: "nucleus centralis medialis" EXACT [NIF_GrossAnatomy:birnlex_971] synonym: "nucleus centralis medialis thalami" EXACT [NIF_GrossAnatomy:birnlex_971] xref: ABA:CM xref: BM:Die-CeM xref: BTO:0003753 xref: FMA:62171 xref: MA:0000872 xref: NIF_GrossAnatomy:birnlex_971 xref: SCTID:279161000 is_a: UBERON:0002308 ! nucleus of brain relationship: spatially_disjoint_from UBERON:0001922 {source="ABA"} ! parafascicular nucleus relationship: spatially_disjoint_from UBERON:0001924 {source="ABA"} ! paracentral nucleus relationship: spatially_disjoint_from UBERON:0002955 {source="ABA"} ! rhomboidal nucleus relationship: spatially_disjoint_from UBERON:0003036 {source="ABA"} ! central lateral nucleus [Term] id: UBERON:0001924 name: paracentral nucleus alt_id: UBERON:FMA_62172-MA_0000873 def: "one of the intralaminar nuclei of the thalamus, located medial to the central lateral nucleus." [MP:0008928] comment: todo - relationships synonym: "nucleus centralis lateralis superior (kusama)" EXACT [NIF_GrossAnatomy:birnlex_981] synonym: "nucleus paracentral" EXACT [NIF_GrossAnatomy:birnlex_981] synonym: "nucleus paracentral thalami" EXACT [NIF_GrossAnatomy:birnlex_981] synonym: "nucleus paracentralis thalami" EXACT [FMA:62172, FMA:TA] synonym: "paracentral nucleus of thalamus" EXACT [] synonym: "paracentral nucleus thalamus (gurdjian 1927)" EXACT [NIF_GrossAnatomy:birnlex_981] synonym: "paracentral thalamic nucleus" EXACT [] xref: ABA:PCN xref: BM:Die-Th-Pc xref: EV:0100204 xref: FMA:62172 xref: MA:0000873 xref: NIF_GrossAnatomy:birnlex_981 xref: SCTID:279152000 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0007692 ! implied link automatically realized ! nucleus of thalamus relationship: part_of UBERON:0002733 {source="FMA"} ! intralaminar nuclear group relationship: spatially_disjoint_from UBERON:0001922 {source="ABA"} ! parafascicular nucleus relationship: spatially_disjoint_from UBERON:0001923 {source="ABA"} ! central medial nucleus relationship: spatially_disjoint_from UBERON:0002955 {source="ABA"} ! rhomboidal nucleus relationship: spatially_disjoint_from UBERON:0003036 {source="ABA"} ! central lateral nucleus [Term] id: UBERON:0001925 name: ventral lateral nucleus alt_id: UBERON:FMA_62186-ZFA_0000306 def: "The ventral lateral nucleus (VL) is a nucleus of the thalamus. [WP,unvetted]." [Wikipedia:Ventral_lateral_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "lateral ventral nucleus of thalamus" EXACT [] synonym: "nuclei ventrales laterales thalami" RELATED [BTO:0002463] synonym: "nucleus ventralis intermedius" EXACT [NIF_GrossAnatomy:birnlex_1237] synonym: "nucleus ventralis lateralis" EXACT [NIF_GrossAnatomy:birnlex_1237] synonym: "nucleus ventralis lateralis thalami" EXACT [NIF_GrossAnatomy:birnlex_1237] synonym: "nucleus ventralis thalami lateralis" EXACT [NIF_GrossAnatomy:birnlex_1237] synonym: "nucleus ventrolateralis thalami" EXACT [NIF_GrossAnatomy:birnlex_1237] synonym: "ventral lateral complex of thalamus" EXACT [] synonym: "ventral lateral nuclei of thalamus" RELATED [BTO:0002463] synonym: "ventral lateral nucleus of thalamus" EXACT [] synonym: "ventral lateral thalamic nuclei" EXACT [] synonym: "ventral lateral thalamic nucleus" EXACT [NIF_GrossAnatomy:birnlex_1237] synonym: "ventrolateral nucleus of the thalamus" EXACT [] synonym: "ventrolateral thalamic nucleus" EXACT [] xref: BM:Die-Th-VL xref: BTO:0002463 xref: FMA:62186 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/ThalamicNuclei.png/200px-ThalamicNuclei.png xref: ncithesaurus:Ventrolateral_Nucleus_of_the_Thalamus xref: NIF_GrossAnatomy:birnlex_1237 xref: SCTID:279146001 xref: TAO:0000306 xref: ZFA:0000306 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0007692 ! implied link automatically realized ! nucleus of thalamus relationship: part_of UBERON:0001900 ! subthalamus [Term] id: UBERON:0001926 name: lateral geniculate body alt_id: UBERON:FMA_62209-MA_0000869 def: "The lateral geniculate nucleus is the primary processor of visual information received from the retina[GO]." [Wikipedia:Lateral_geniculate_body] comment: Note that BTO has distinct classes for body and nucleus, but other sources treat as identical subset: uberon_slim synonym: "corpus geniculatum externum" RELATED [BTO:0004367] synonym: "corpus geniculatum laterales" EXACT [NIF_GrossAnatomy:birnlex_1662] synonym: "external geniculate body" RELATED [Wikipedia:Lateral_geniculate_nucleus] synonym: "lateral geniculate complex" EXACT [] synonym: "lateral geniculate nucleus" EXACT [] synonym: "nucleus geniculatus lateralis" EXACT [NIF_GrossAnatomy:birnlex_1662] xref: BTO:0004366 xref: BTO:0004367 xref: EFO:0001988 xref: EV:0100219 xref: FMA:62209 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b7/Gray719.png/200px-Gray719.png xref: MA:0000869 xref: ncithesaurus:External_Geniculate_Body xref: NIF_GrossAnatomy:birnlex_1662 xref: SCTID:362377006 is_a: UBERON:0007692 {source="FMA"} ! nucleus of thalamus relationship: part_of UBERON:0002704 {source="FMA"} ! metathalamus [Term] id: UBERON:0001927 name: medial geniculate body alt_id: UBERON:FMA_62211-MA_0000870 def: "The Medial Geniculate Nucleus (MGN) or Medial Geniculate Body (MGB) is part of the auditory thalamus and represents the thalamic relay between the inferior colliculus (IC) and the auditory cortex (AC). It is made up of a number of sub-nuclei that are distinguished by their neuronal morphology and density, by their afferent and efferent connections, and by the coding properties of their neurons. It is thought that the MGB influences the direction and maintenance of attention. [WP,unvetted]." [Wikipedia:Medial_geniculate_body] subset: uberon_slim synonym: "corpus geniculatum mediale" EXACT [NIF_GrossAnatomy:birnlex_1670] synonym: "internal geniculate body" RELATED [ncithesaurus:Internal_Geniculate_Body] synonym: "medial geniculate complex" EXACT [] synonym: "medial geniculate nuclei" EXACT [] synonym: "medial geniculate nucleus" EXACT [] synonym: "MGB" RELATED [BTO:0002674] synonym: "nuclei corporis geniculati medialis" EXACT [FMA:62211, FMA:TA] xref: ABA:MG xref: BM:Die-Th-MG xref: BTO:0002674 xref: EFO:0001968 xref: EV:0100218 xref: FMA:62211 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/ThalamicNuclei.png/200px-ThalamicNuclei.png xref: MA:0000870 xref: ncithesaurus:Internal_Geniculate_Body xref: NIF_GrossAnatomy:birnlex_1670 xref: SCTID:362378001 is_a: UBERON:0007692 {source="FMA"} ! nucleus of thalamus relationship: part_of UBERON:0002704 {source="FMA"} ! metathalamus relationship: spatially_disjoint_from UBERON:0002479 {source="ABA"} ! dorsal lateral geniculate nucleus [Term] id: UBERON:0001928 name: preoptic area alt_id: UBERON:FMA_62313-ZFA_0000470 def: "Area of the forebrain anterior to the posterior tuberculum and the hypothalamus and ventral to the ventral thalamus[ZFA]." [Wikipedia:Preoptic_area, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "area hypothalamica rostralis" RELATED [BTO:0001796] synonym: "area praeoptica" RELATED [] synonym: "area preoptica" RELATED [] synonym: "preoptic hypothalamic area" RELATED [BTO:0001796] synonym: "preoptic hypothalamic region" RELATED [BTO:0001796] synonym: "preoptic nuclei" EXACT [] synonym: "preoptic region" RELATED [] synonym: "preoptic region of hypothalamus" EXACT [] synonym: "regio hypothalamica anterior" RELATED [BTO:0001796] xref: BM:Die-Hy-POA xref: BTO:0001796 xref: EFO:0002523 xref: FMA:62313 xref: GAID:644 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/HypothalamicNuclei.PNG/200px-HypothalamicNuclei.PNG xref: MESH:A.08.186.211.730.385.357.342.450 xref: NIF_GrossAnatomy:birnlex_1706 xref: SCTID:362382004 xref: TAO:0000470 xref: ZFA:0000470 is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon relationship: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0001929 name: supraoptic nucleus alt_id: UBERON:FMA_62317-MA_0000849 def: "The supraoptic nucleus (SON) is a nucleus of magnocellular neurosecretory cells in the hypothalamus of the mammalian brain. The nucleus is situated at the base of the brain, adjacent to the optic chiasm. In humans, it contains about 3,000 neurons. [WP,unvetted]." [Wikipedia:Supraoptic_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "nucleus supraopticus" RELATED [BTO:0002697] synonym: "supra-optic nucleus" EXACT [] synonym: "supraoptic nucleus of hypothalamus" EXACT [] xref: ABA:SO xref: BM:Die-Hy-SON xref: BTO:0002697 xref: EFO:0002476 xref: EV:0100227 xref: FMA:62317 xref: GAID:646 xref: http://upload.wikimedia.org/wikipedia/en/thumb/d/d7/SONss.jpg/200px-SONss.jpg xref: MA:0000849 xref: MESH:A.08.186.211.730.385.357.342.650 xref: NIF_GrossAnatomy:birnlex_1411 xref: SCTID:369130007 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0006568 ! implied link automatically realized ! hypothalamic nucleus relationship: part_of UBERON:0002271 ! periventricular zone of hypothalamus relationship: spatially_disjoint_from UBERON:0001930 {source="ABA"} ! paraventricular nucleus of hypothalamus relationship: spatially_disjoint_from UBERON:0001932 {source="ABA"} ! arcuate nucleus of hypothalamus [Term] id: UBERON:0001930 name: paraventricular nucleus of hypothalamus alt_id: UBERON:FMA_62320-MA_0000848 def: "The paraventricular nucleus (PVN) is a neuronal nucleus in the hypothalamus. It contains multiple subpopulations of neurons that are activated by a variety of stressful and/or physiological changes. Many PVH neurons project directly to the posterior pituitary where they release oxytocin or vasopressin into the general circulation. Other PVN neurons control various anterior pituitary functions, while still others directly regulate appetite and autonomic functions in the brainstem and spinal cord. [WP,unvetted]." [Wikipedia:Paraventricular_nucleus_of_hypothalamus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "filiform nucleus" EXACT [] synonym: "nucleus paraventricularis hypothalami" RELATED [BTO:0002476] synonym: "paraventricular hypothalamic nucleus" EXACT [] synonym: "paraventricular nucleus" EXACT [] xref: ABA:PVH xref: BM:Die-Hy-PAH xref: BTO:0002476 xref: EFO:0002469 xref: EV:0100229 xref: FMA:62320 xref: GAID:643 xref: http://upload.wikimedia.org/wikipedia/en/thumb/e/ef/PVNss.jpg/200px-PVNss.jpg xref: MA:0000848 xref: MESH:A.08.186.211.730.385.357.342.400 xref: NIF_GrossAnatomy:birnlex_1407 xref: SCTID:369131006 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0006568 ! implied link automatically realized ! hypothalamic nucleus relationship: part_of UBERON:0002271 ! periventricular zone of hypothalamus relationship: spatially_disjoint_from UBERON:0001929 {source="ABA"} ! supraoptic nucleus relationship: spatially_disjoint_from UBERON:0001932 {source="ABA"} ! arcuate nucleus of hypothalamus [Term] id: UBERON:0001931 name: lateral preoptic nucleus alt_id: UBERON:FMA_62326-MA_0000835 def: "The lateral preoptic nucleus is lateral to the medial preoptic nucleus. It also mediates non-REM sleep onset.[WP,unvetted]." [Wikipedia:Preoptic_area#Lateral_preoptic_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "lateral preoptic area" EXACT [] synonym: "lateral preoptic hypothalamic nucleus" EXACT [] xref: ABA:LPO xref: BM:Die-Hy-LPO xref: FMA:62326 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/HypothalamicNuclei.PNG/200px-HypothalamicNuclei.PNG xref: MA:0000835 xref: NIF_GrossAnatomy:birnlex_1722 xref: SCTID:369129002 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0006568 ! implied link automatically realized ! hypothalamic nucleus relationship: part_of UBERON:0002273 ! lateral zone of hypothalamus relationship: spatially_disjoint_from UBERON:0001906 {source="ABA"} ! subthalamic nucleus relationship: spatially_disjoint_from UBERON:0001907 {source="ABA"} ! zona incerta relationship: spatially_disjoint_from UBERON:0001933 {source="ABA"} ! retrochiasmatic area relationship: spatially_disjoint_from UBERON:0002430 {source="ABA"} ! lateral hypothalamic area [Term] id: UBERON:0001932 name: arcuate nucleus of hypothalamus alt_id: UBERON:FMA_62329-MA_0000847 def: "The arcuate nucleus (or infundibular nucleus) is an aggregation of neurons in the mediobasal hypothalamus, adjacent to the third ventricle and the median eminence. The arcuate nucleus includes several important populations of neurons, including: Neuroendocrine neurons, Centrally-projecting neurons and Others. [WP,unvetted]." [Wikipedia:Arcuate_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "arcuate hypothalamic nucleus" EXACT [] synonym: "arcuate nucleus" EXACT [] synonym: "arcuate nucleus-2" EXACT [] synonym: "arcuate periventricular nucleus" EXACT [] synonym: "infundibular hypothalamic nucleus" EXACT [] synonym: "infundibular nucleus" EXACT [] synonym: "infundibular periventricular nucleus" EXACT [] synonym: "nucleus arcuatus" EXACT [FMA:62329, FMA:TA] synonym: "nucleus arcuatus hypothalami" RELATED [BTO:0002473] synonym: "nucleus infundibularis" RELATED [BTO:0002473] synonym: "nucleus semilunaris" RELATED [BTO:0002473] xref: ABA:ARH xref: BM:HAr xref: BTO:0002473 xref: EV:0100230 xref: FMA:62329 xref: GAID:647 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/HypothalamicNuclei.PNG/200px-HypothalamicNuclei.PNG xref: MA:0000847 xref: MESH:A.08.186.211.730.385.357.352.081 xref: ncithesaurus:Arcuate_Nucleus xref: NIF_GrossAnatomy:birnlex_1638 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0006568 ! implied link automatically realized ! hypothalamic nucleus relationship: part_of UBERON:0002271 ! periventricular zone of hypothalamus relationship: spatially_disjoint_from UBERON:0001929 {source="ABA"} ! supraoptic nucleus relationship: spatially_disjoint_from UBERON:0001930 {source="ABA"} ! paraventricular nucleus of hypothalamus [Term] id: UBERON:0001933 name: retrochiasmatic area alt_id: UBERON:FMA_62330-MA_0000841 comment: This class was created automatically from a combination of ontologies synonym: "retrochiasmatic region" EXACT [] xref: ABA:RCH xref: FMA:62330 xref: MA:0000841 xref: NIF_GrossAnatomy:birnlex_1569 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0002272 ! medial zone of hypothalamus relationship: spatially_disjoint_from UBERON:0001906 {source="ABA"} ! subthalamic nucleus relationship: spatially_disjoint_from UBERON:0001907 {source="ABA"} ! zona incerta relationship: spatially_disjoint_from UBERON:0001931 {source="ABA"} ! lateral preoptic nucleus relationship: spatially_disjoint_from UBERON:0002430 {source="ABA"} ! lateral hypothalamic area [Term] id: UBERON:0001934 name: dorsomedial nucleus of hypothalamus alt_id: UBERON:FMA_62331-MA_0000838 def: "The Dorsomedial hypothalamic nucleus is a nucleus of the hypothalamus. It is involved in feeding, drinking, and body weight regulation. [WP,unvetted]." [Wikipedia:Dorsomedial_hypothalamic_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "dorsomedial hypothalamic nucleus" EXACT [] synonym: "dorsomedial nucleus of dorsal hypothalamus" EXACT [] synonym: "dorsomedial nucleus of intermediate hypothalamus" EXACT [] synonym: "nucleus dorsomedialis hypothalamicae intermediae" RELATED [BTO:0002474] xref: ABA:DMH xref: BM:Die-Hy-DMH xref: BTO:0002474 xref: EV:0100232 xref: FMA:62331 xref: GAID:648 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/HypothalamicNuclei.PNG/200px-HypothalamicNuclei.PNG xref: MA:0000838 xref: MESH:A.08.186.211.730.385.357.352.270 xref: NIF_GrossAnatomy:birnlex_1558 xref: SCTID:369134003 is_a: UBERON:0002951 ! implied link automatically realized ! regional part of intermediate hypothalamic region is_a: UBERON:0006568 {source="FMA"} ! hypothalamic nucleus relationship: part_of UBERON:0002272 {source="MA"} ! medial zone of hypothalamus relationship: part_of UBERON:0002555 {source="FMA"} ! intermediate hypothalamic region relationship: spatially_disjoint_from UBERON:0002034 {source="ABA"} ! suprachiasmatic nucleus relationship: spatially_disjoint_from UBERON:0002219 {source="ABA"} ! subfornical organ relationship: spatially_disjoint_from UBERON:0002625 {source="ABA"} ! median preoptic nucleus relationship: spatially_disjoint_from UBERON:0002689 {source="ABA"} ! supraoptic crest relationship: spatially_disjoint_from UBERON:0002690 {source="ABA"} ! anteroventral periventricular nucleus relationship: spatially_disjoint_from UBERON:0007626 {source="ABA"} ! subparaventricular zone [Term] id: UBERON:0001935 name: ventromedial nucleus of hypothalamus alt_id: UBERON:FMA_62332-MA_0000845 def: "The ventromedial nucleus (sometimes referred to as the ventromedial hypothalamus) is a nucleus of the hypothalamus. [WP,unvetted]." [Wikipedia:Ventromedial_hypothalamic_nucleus] comment: part of tuberal area in MA subset: uberon_slim synonym: "nucleus ventromedialis hypothalami" RELATED [BTO:0002472] synonym: "ventrolateral hypothalamic nucleus" RELATED [BTO:0002472] synonym: "ventrolateral nucleus of hypothalamus" RELATED [BTO:0002472] synonym: "ventromedial hypothalamic nucleus" EXACT [] synonym: "ventromedial nucleus of hypothalamus." RELATED [BTO:0002472] xref: ABA:VMH xref: BM:VMH xref: BTO:0002472 xref: EV:0100233 xref: FMA:62332 xref: GAID:650 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/HypothalamicNuclei.PNG/200px-HypothalamicNuclei.PNG xref: MA:0000845 xref: MESH:A.08.186.211.730.385.357.352.953 xref: NIF_GrossAnatomy:birnlex_1572 xref: SCTID:369124007 is_a: UBERON:0002951 ! implied link automatically realized ! regional part of intermediate hypothalamic region is_a: UBERON:0006568 {source="FMA"} ! hypothalamic nucleus relationship: part_of UBERON:0002555 {source="FMA"} ! intermediate hypothalamic region relationship: spatially_disjoint_from UBERON:0002035 {source="ABA"} ! medial preoptic nucleus relationship: spatially_disjoint_from UBERON:0002206 {source="ABA"} ! mammillary body relationship: spatially_disjoint_from UBERON:0002634 {source="ABA"} ! anterior nucleus of hypothalamus relationship: spatially_disjoint_from UBERON:0002706 {source="ABA"} ! posterior nucleus of hypothalamus [Term] id: UBERON:0001936 name: tuberomammillary nucleus alt_id: UBERON:FMA_62335-MA_0000853 def: "The tuberomammillary nucleus is a subnucleus of the posterior third of the hypothalamus. It consists of, largely, histaminergic and is involved with the control of arousal, sleep and circadian rhythm. Axons of the tuberomammillary nucleus project primarily to the cerebral cortex, thalamus, basal ganglia, basal forebrain, and hypothalamus. The projections to the cerebral cortex directly increase cortical activation and arousal, and projections to acetylcholinergic neurons of the basal forebrain and dorsal pons do so indirectly, by increasing the release of acetylcholine in the cerebral cortex. [WP,unvetted]." [Wikipedia:Tuberomammillary_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "caudal magnocellular nucleus" EXACT [] synonym: "mammilloinfundibular nucleus" EXACT [] synonym: "mammiloinfundibular nucleus" EXACT [NIF_GrossAnatomy:birnlex_1271] synonym: "tuberomamillary nucleus" RELATED DUBIOUS [EV:0100237] synonym: "tuberomammillary hypothalamic nucleus" EXACT [] xref: ABA:TM xref: EV:0100237 xref: FMA:62335 xref: MA:0000853 xref: NIF_GrossAnatomy:birnlex_1271 xref: SCTID:369122006 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0006568 ! implied link automatically realized ! hypothalamic nucleus relationship: part_of UBERON:0002206 ! mammillary body relationship: part_of UBERON:0002430 ! lateral hypothalamic area relationship: spatially_disjoint_from UBERON:0001938 {source="ABA"} ! lateral mammillary nucleus relationship: spatially_disjoint_from UBERON:0001939 {source="ABA"} ! medial mammillary nucleus relationship: spatially_disjoint_from UBERON:0001940 {source="ABA"} ! supramammillary nucleus [Term] id: UBERON:0001937 name: lateral hypothalamic nucleus alt_id: UBERON:FMA_62337-ZFA_0000227 comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core xref: EV:0100234 xref: FMA:62337 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/HypothalamicNuclei.PNG/200px-HypothalamicNuclei.PNG xref: NIF_GrossAnatomy:birnlex_1199 xref: SCTID:360452004 xref: TAO:0000227 xref: ZFA:0000227 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0006568 ! implied link automatically realized ! hypothalamic nucleus relationship: part_of UBERON:0002430 ! lateral hypothalamic area [Term] id: UBERON:0001938 name: lateral mammillary nucleus alt_id: UBERON:FMA_62341-MA_0000850 comment: This class was created automatically from a combination of ontologies synonym: "lateral mammillary hypothalamic nucleus" EXACT [] synonym: "lateral nucleus of mammillary body" EXACT [] synonym: "nucleus mammillaris lateralis" EXACT [FMA:62341, FMA:TA] xref: ABA:LM xref: EV:0100239 xref: FMA:62341 xref: MA:0000850 xref: NIF_GrossAnatomy:birnlex_1460 xref: SCTID:369143007 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0006569 ! implied link automatically realized ! diencephalic nucleus relationship: part_of UBERON:0002206 ! mammillary body relationship: spatially_disjoint_from UBERON:0001936 {source="ABA"} ! tuberomammillary nucleus relationship: spatially_disjoint_from UBERON:0001939 {source="ABA"} ! medial mammillary nucleus relationship: spatially_disjoint_from UBERON:0001940 {source="ABA"} ! supramammillary nucleus [Term] id: UBERON:0001939 name: medial mammillary nucleus alt_id: UBERON:FMA_62342-MA_0000851 comment: This class was created automatically from a combination of ontologies synonym: "internal mammillary nucleus" EXACT [] synonym: "medial nucleus of mammillary body" EXACT [] synonym: "nucleus mammillaris medialis" EXACT [FMA:62342, FMA:TA] xref: ABA:MM xref: EV:0100238 xref: FMA:62342 xref: MA:0000851 xref: NIF_GrossAnatomy:birnlex_1299 xref: SCTID:369141009 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0006569 ! implied link automatically realized ! diencephalic nucleus relationship: part_of UBERON:0002206 ! mammillary body relationship: spatially_disjoint_from UBERON:0001936 {source="ABA"} ! tuberomammillary nucleus relationship: spatially_disjoint_from UBERON:0001938 {source="ABA"} ! lateral mammillary nucleus relationship: spatially_disjoint_from UBERON:0001940 {source="ABA"} ! supramammillary nucleus [Term] id: UBERON:0001940 name: supramammillary nucleus alt_id: UBERON:FMA_62347-MA_0000852 comment: This class was created automatically from a combination of ontologies xref: ABA:SUM xref: FMA:62347 xref: MA:0000852 xref: NIF_GrossAnatomy:birnlex_1479 xref: SCTID:369144001 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0006569 ! implied link automatically realized ! diencephalic nucleus relationship: part_of UBERON:0002206 ! mammillary body relationship: spatially_disjoint_from UBERON:0001936 {source="ABA"} ! tuberomammillary nucleus relationship: spatially_disjoint_from UBERON:0001938 {source="ABA"} ! lateral mammillary nucleus relationship: spatially_disjoint_from UBERON:0001939 {source="ABA"} ! medial mammillary nucleus [Term] id: UBERON:0001941 name: lateral habenular nucleus alt_id: UBERON:FMA_62372-MA_0000831 comment: This class was created automatically from a combination of ontologies synonym: "lateral habenula" EXACT [] synonym: "nucleus habenulae lateralis" EXACT [NIF_GrossAnatomy:birnlex_1438] synonym: "nucleus habenularis lateralis" EXACT [NIF_GrossAnatomy:birnlex_1438] synonym: "nucleus habenularis lateralis epithalami" EXACT [NIF_GrossAnatomy:birnlex_1438] xref: ABA:LH xref: BM:Die-Epi-Hl xref: BTO:0002699 xref: FMA:62372 xref: MA:0000831 xref: NIF_GrossAnatomy:birnlex_1438 xref: SCTID:361538005 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002757 ! implied link automatically realized ! regional part of epithalamus is_a: UBERON:0006569 ! implied link automatically realized ! diencephalic nucleus relationship: part_of UBERON:0001904 ! habenula relationship: spatially_disjoint_from UBERON:0001905 {source="ABA"} ! pineal body relationship: spatially_disjoint_from UBERON:0001942 {source="ABA"} ! medial habenular nucleus [Term] id: UBERON:0001942 name: medial habenular nucleus alt_id: UBERON:FMA_62373-MA_0000832 comment: This class was created automatically from a combination of ontologies synonym: "medial habenula" EXACT [] synonym: "nucleus habenulae medialis" EXACT [NIF_GrossAnatomy:birnlex_1431] synonym: "nucleus habenularis medialis" EXACT [NIF_GrossAnatomy:birnlex_1431] synonym: "nucleus habenularis medialis (hassler)" EXACT [NIF_GrossAnatomy:birnlex_1431] synonym: "nucleus habenularis medialis epithalami" EXACT [NIF_GrossAnatomy:birnlex_1431] xref: ABA:MH xref: BM:Die-Epi-HM xref: BTO:0003686 xref: FMA:62373 xref: MA:0000832 xref: NIF_GrossAnatomy:birnlex_1431 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002757 ! implied link automatically realized ! regional part of epithalamus is_a: UBERON:0006569 ! implied link automatically realized ! diencephalic nucleus relationship: part_of UBERON:0001904 ! habenula relationship: spatially_disjoint_from UBERON:0001905 {source="ABA"} ! pineal body relationship: spatially_disjoint_from UBERON:0001941 {source="ABA"} ! lateral habenular nucleus [Term] id: UBERON:0001943 name: midbrain tegmentum alt_id: UBERON:FMA_62393-MA_0000212-ZFA_0001354 def: "Subdivision of the midbrain lying anterior to the tectum and posterior to the substantia nigra and cerebral peduncle.[FMA]" [FMA:FMA, Wikipedia:Midbrain_tegmentum] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "mesencephalic tegmentum" EXACT [] synonym: "tegmentum" BROAD [] synonym: "tegmentum mesencephali" EXACT [FMA:62393, FMA:TA] synonym: "tegmentum of midbrain" EXACT [] xref: BTO:0003388 xref: EFO:0000921 xref: EMAPA:18215 xref: FMA:62393 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b6/Gray712.png/200px-Gray712.png xref: MA:0000212 xref: MAT:0000452 xref: NIF_GrossAnatomy:birnlex_1200 xref: OG:0001367 xref: SCTID:362392007 xref: TAO:0001354 xref: ZFA:0000160 is_a: UBERON:0002950 ! regional part of midbrain relationship: part_of UBERON:0001891 ! midbrain relationship: part_of UBERON:0002298 ! brainstem [Term] id: UBERON:0001944 name: pretectal region alt_id: UBERON:FMA_62402-MA_0001062-ZFA_0000418 def: "Region between dorsal thalamus and optic tectum[pub]. It receives binocular sensory input from retinal ganglion cells of the eyes, and is the region responsible for maintaining the pupillary light reflex. [WP,unvetted]." [ISBN10:0471888893 "Comparative Vertebrate Neuroanatomy: Evolution and Adaptation", Wikipedia:Pretectum] comment: part of diencephalon in ZFA - modify to adjacent here, supported by pub subset: uberon_slim subset: vertebrate_core synonym: "area pretectalis" EXACT [FMA:62402, FMA:TA] synonym: "nuclei pretectales" EXACT [FMA:62402, FMA:TA] synonym: "pretectal area" EXACT [] synonym: "pretectal nuclei" EXACT [] synonym: "pretectum" EXACT [] xref: ABA:PRT xref: BM:MB-Tec-PT xref: FMA:62402 xref: MA:0001062 xref: NIF_GrossAnatomy:birnlex_703 xref: SCTID:416333003 xref: TAO:0000418 xref: ZFA:0000418 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002966 ! implied link automatically realized ! regional part of midbrain tectum is_a: UBERON:0009661 ! implied link automatically realized ! midbrain nucleus relationship: adjacent_to UBERON:0004703 {source="ISBN10:0471888893"} ! dorsal thalamus relationship: part_of UBERON:0002314 {source="FMA"} ! midbrain tectum relationship: spatially_disjoint_from UBERON:0001715 {source="ABA"} ! oculomotor nuclear complex relationship: spatially_disjoint_from UBERON:0001947 {source="ABA"} ! red nucleus relationship: spatially_disjoint_from UBERON:0001966 {source="ABA"} ! substantia nigra pars reticulata relationship: spatially_disjoint_from UBERON:0002141 {source="ABA"} ! parvocellular oculomotor nucleus relationship: spatially_disjoint_from UBERON:0002438 {source="ABA"} ! ventral tegmental nucleus relationship: spatially_disjoint_from UBERON:0002691 {source="ABA"} ! ventral tegmental area relationship: spatially_disjoint_from UBERON:0002696 {source="ABA"} ! cuneiform nucleus relationship: spatially_disjoint_from UBERON:0002722 {source="ABA"} ! trochlear nucleus relationship: spatially_disjoint_from UBERON:0002995 {source="ABA"} ! substantia nigra pars lateralis relationship: spatially_disjoint_from UBERON:0003040 {source="ABA"} ! central gray substance of midbrain [Term] id: UBERON:0001945 name: superior colliculus alt_id: UBERON:FMA_62403-MA_0001068-ZFA_0000445 def: "Part of the midbrain tecturm consisting of paired bodies that sit caudal to the thalamus and surround the pineal gland in the mesencephalon of vertebrate brains. It comprises the rostral aspect of the midbrain, posterior to the periaqueductal gray and adjacent superior the inferior colliculus. The inferior and superior colliculi are known collectively as the corpora quadrigemina (Latin, quadruplet bodies). It consists of several identified cellular layers and also comprises the brachium of the superior colliculus and commissure of superior colliculus [Wikipedia.org and Neuronames (MM)]." [NIF_GrossAnatomy:birnlex_1040, Wikipedia:Superior_colliculus] comment: The term SC is used when discussing mammals, and OT for other vertebrates[WP]. The tectum is a layered structure, with a number of layers that vary by species. The superficial layers are sensory-related, and receive input from the eyes as well as other sensory systems.[1] The optic tectum is one of the fundamental components of the vertebrate brain, existing across the full range of species from hagfish to human.[4] (See the brain article for background.) Some aspects of the structure are very consistent, including a structure composed of a number of layers, with a dense input from the optic nerve to the superficial layers and another strong input conveying somatosensory input to deeper layers. Other aspects are highly variable, such as the total number of layers (from 3 in the African lungfish to 15 in the goldfish[5]), and the number of different types of cells (from 2 in the lungfish to 27 in the house sparrow[5]). In hagfish, lamprey, and shark it is a relatively small structure, but in teleost fish it is greatly expanded, in some cases becoming the largest structure in the brain. (See the adjoining drawing of a codfish brain.) In amphibians, reptiles, and especially birds it is also a very significant component, but in mammals it is dwarfed by the massive expansion of the cerebral cortex. subset: uberon_slim subset: vertebrate_core synonym: "anterior colliculus" EXACT [] synonym: "anterior corpus quadrigeminum" EXACT [] synonym: "corpora bigemina" RELATED [] synonym: "cranial colliculus" EXACT [] synonym: "dorsal midbrain" RELATED [] synonym: "optic lobe" RELATED [] synonym: "optic tectum" RELATED [] synonym: "optic tectum" EXACT SENSU [Wikipedia:Superior_colliculus, ZFA:0000445] synonym: "tectal lobe" RELATED [] synonym: "tectum" RELATED [] synonym: "tectum opticum" RELATED [] xref: AAO:0010609 xref: BM:MB-Tec-SC xref: BTO:0000965 xref: EFO:0002474 xref: EV:0100245 xref: FMA:62403 xref: GAID:576 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/da/Cn3nucleus.png/200px-Cn3nucleus.png xref: MA:0001068 xref: MESH:A.08.186.211.132.659.237.816 xref: NIF_GrossAnatomy:birnlex_1040 xref: XAO:0003226 xref: ZFA:0000445 is_a: UBERON:0002966 ! regional part of midbrain tectum is_a: UBERON:0006794 ! visual processing part of nervous system relationship: part_of UBERON:0002259 ! corpora quadrigemina [Term] id: UBERON:0001946 name: inferior colliculus alt_id: UBERON:FMA_62404-MA_0001067 def: "The inferior colliculi together with the superior colliculi form the eminences of the corpora quadrigemina, and also part of the tectal region of the midbrain. The inferior colliculus lies caudal to its counterpart - the superior colliculus - above the trochlear nerve, and at the base of the projection of the medial geniculate nucleus (MGN) and the lateral geniculate nucleus (LGN). The inferior colliculus is the principal midbrain nucleus of the auditory pathway and receives input from several more peripheral brainstem nuclei in the auditory pathway, as well as inputs from the auditory cortex. The inferior colliculus has three subnuclei. [WP,unvetted]." [Wikipedia:Inferior_colliculus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "caudal colliculus" EXACT [] synonym: "inferior colliculi" EXACT PLURAL [EV:0100246] synonym: "posterior colliculus" EXACT [] synonym: "posterior corpus quadrigeminum" EXACT [] xref: ABA:IC xref: EFO:0002465 xref: EV:0100246 xref: FMA:62404 xref: GAID:575 xref: MA:0001067 xref: MESH:A.08.186.211.132.659.237.364 xref: NIF_GrossAnatomy:birnlex_806 is_a: UBERON:0002966 ! regional part of midbrain tectum relationship: part_of UBERON:0002259 ! corpora quadrigemina [Term] id: UBERON:0001947 name: red nucleus alt_id: UBERON:FMA_62407-MA_0001063 def: "The red nucleus is a structure in the rostral midbrain involved in motor coordination. It comprises a caudal magnocellular and a rostral parvocellular part. [WP,unvetted]." [Wikipedia:Red_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: ABA:RN xref: BM:MB-RN xref: EV:0100248 xref: FMA:62407 xref: GAID:586 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/da/Cn3nucleus.png/200px-Cn3nucleus.png xref: MA:0001063 xref: MESH:A.08.186.211.132.659.822.642 xref: NIF_GrossAnatomy:birnlex_1478 xref: SCTID:279287006 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0007414 ! implied link automatically realized ! nucleus of midbrain tegmentum relationship: part_of UBERON:0001943 ! midbrain tegmentum relationship: spatially_disjoint_from UBERON:0001715 {source="ABA"} ! oculomotor nuclear complex relationship: spatially_disjoint_from UBERON:0001944 {source="ABA"} ! pretectal region relationship: spatially_disjoint_from UBERON:0001966 {source="ABA"} ! substantia nigra pars reticulata relationship: spatially_disjoint_from UBERON:0002141 {source="ABA"} ! parvocellular oculomotor nucleus relationship: spatially_disjoint_from UBERON:0002438 {source="ABA"} ! ventral tegmental nucleus relationship: spatially_disjoint_from UBERON:0002691 {source="ABA"} ! ventral tegmental area relationship: spatially_disjoint_from UBERON:0002696 {source="ABA"} ! cuneiform nucleus relationship: spatially_disjoint_from UBERON:0002722 {source="ABA"} ! trochlear nucleus relationship: spatially_disjoint_from UBERON:0002995 {source="ABA"} ! substantia nigra pars lateralis relationship: spatially_disjoint_from UBERON:0003040 {source="ABA"} ! central gray substance of midbrain [Term] id: UBERON:0001948 name: regional part of spinal cord alt_id: UBERON:FMA_62420-ZFA_0001332 comment: TODO - check ZFA subset: uberon_slim synonym: "spinal neuromere" RELATED [] synonym: "spinal neuromeres" RELATED [] xref: NIF_GrossAnatomy:birnlex_1496 xref: SCTID:244437008 xref: ZFA:0001332 is_a: UBERON:0000073 ! regional part of nervous system relationship: part_of UBERON:0002240 ! spinal cord [Term] id: UBERON:0001949 name: gingival epithelium alt_id: UBERON:FMA_62423-MA_0001576 def: "A stratified squamous epithelium consisting of a basal layer; it is keratinized or parakeratinized[BTO]." [BTO:0004998] synonym: "epithelial tissue of gingiva" EXACT [OBOL:automatic] synonym: "epithelium of gingiva" EXACT [] synonym: "gingiva epithelial tissue" EXACT [OBOL:automatic] synonym: "gingiva epithelium" EXACT [OBOL:automatic] xref: BTO:0004998 xref: FMA:62423 xref: MA:0001576 xref: ncithesaurus:Gingival_Epithelium is_a: UBERON:0000486 ! multilaminar epithelium is_a: UBERON:0003929 ! implied link automatically realized ! gut epithelium is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0004807 ! implied link automatically realized ! respiratory system epithelium relationship: part_of UBERON:0001828 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001828 ! gingiva relationship: part_of UBERON:0001828 ! gingiva [Term] id: UBERON:0001950 name: neocortex alt_id: UBERON:FMA_62429-MA_0002754 def: "The neocortex is a part of the brain of mammals. It is the outer layer of the cerebral hemispheres, and made up of six layers, labelled I to VI (with VI being the innermost and I being the outermost). The neocortex is part of the cerebral cortex (along with the archicortex and paleocortex, which are cortical parts of the limbic system). It is involved in higher functions such as sensory perception, generation of motor commands, spatial reasoning, conscious thought and, in humans, language. Other names for the neocortex include neopallium and isocortex ('equal rind'). [WP,unvetted]." [Wikipedia:Neocortex] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "cerebral cortex" RELATED [] synonym: "cerebral neocortex" EXACT [] synonym: "homogenetic cortex" EXACT [] synonym: "homotypical cortex" EXACT [NIF_GrossAnatomy:birnlex_2547] synonym: "isocortex" EXACT [] synonym: "isocortex (sensu lato)" EXACT [FMA:62429] synonym: "neopallial cortex" EXACT [] synonym: "neopallium" EXACT [] synonym: "nonolfactory cortex" RELATED [BTO:0000920] xref: ABA:Isocortex xref: BTO:0000920 xref: EHDAA2:0000234 xref: EMAPA:17544 xref: FMA:62429 xref: GAID:677 xref: MA:0002754 xref: MESH:A.08.186.211.730.885.213.420 xref: NIF_GrossAnatomy:birnlex_2547 is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex relationship: spatially_disjoint_from UBERON:0002264 {source="ABA"} ! olfactory bulb relationship: spatially_disjoint_from UBERON:0002421 {source="ABA"} ! hippocampal formation [Term] id: UBERON:0001951 name: epithelium of nasopharynx alt_id: UBERON:0003237 alt_id: UBERON:FMA_62452-MA_0001865 def: "An epithelium that is part of a nasopharynx [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "epithelial tissue of nasal part of pharynx" EXACT [OBOL:automatic] synonym: "epithelial tissue of nasopharynx" EXACT [OBOL:automatic] synonym: "epithelial tissue of rhinopharynx" EXACT [OBOL:automatic] synonym: "epithelium of nasal part of pharynx" EXACT [OBOL:automatic] synonym: "epithelium of rhinopharynx" EXACT [OBOL:automatic] synonym: "nasal part of pharynx epithelial tissue" EXACT [OBOL:automatic] synonym: "nasal part of pharynx epithelium" EXACT [OBOL:automatic] synonym: "nasopharynx epithelial tissue" EXACT [OBOL:automatic] synonym: "nasopharynx epithelium" EXACT [] synonym: "rhinopharynx epithelial tissue" EXACT [OBOL:automatic] synonym: "rhinopharynx epithelium" EXACT [OBOL:automatic] xref: BTO:0004480 xref: EHDAA:7090 xref: EHDAA2:0001241 xref: EMAPA:17672 xref: FMA:62452 xref: MA:0001865 xref: ncithesaurus:Nasopharynx_Epithelium xref: OG:0001038 is_a: UBERON:0000485 ! simple columnar epithelium is_a: UBERON:0003351 ! implied link automatically realized ! pharyngeal epithelium is_a: UBERON:0004814 ! implied link automatically realized ! upper respiratory tract epithelium relationship: part_of UBERON:0001728 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001728 ! nasopharynx relationship: part_of UBERON:0003929 {source="EHDAA2"} ! gut epithelium [Term] id: UBERON:0001952 name: epithelium of oropharynx alt_id: UBERON:FMA_62453-MA_0001605 def: "An epithelium that is part of a oropharynx [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "oropharynx epithelial tissue" EXACT [OBOL:automatic] synonym: "oropharynx epithelium" EXACT [MA:0001605] xref: EHDAA2:0004083 xref: FMA:62453 xref: MA:0001605 xref: ncithesaurus:Oropharynx_Epithelium is_a: UBERON:0000486 ! multilaminar epithelium is_a: UBERON:0003351 ! implied link automatically realized ! pharyngeal epithelium is_a: UBERON:0004808 ! implied link automatically realized ! gastrointestinal system epithelium relationship: part_of UBERON:0001729 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001729 ! oropharynx relationship: part_of UBERON:0001729 ! oropharynx relationship: part_of UBERON:0003929 {source="EHDAA2"} ! gut epithelium [Term] id: UBERON:0001953 name: presubiculum alt_id: UBERON:FMA_62486-MA_0000923 def: "Area 27 of Brodmann-1909 is a cytoarchitecturally defined cortical area that is a rostral part of the parahippocampal gyrus of the guenon (Brodmann-1909). It is commonly regarded as a synonym of presubiculum (Crosby-62). [WP,unvetted]." [Wikipedia:Brodmann_area_27] comment: This class was created automatically from a combination of ontologies synonym: "area 27 of Brodmann" EXACT [] synonym: "Brodmann area 27" EXACT [] synonym: "presubiculum (cajal)" EXACT [NIF_GrossAnatomy:birnlex_1108] xref: ABA:PRE xref: BM:Tel-Cx-PSB xref: FMA:62486 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5f/Brodmann_Cytoarchitectonics_27.png/200px-Brodmann_Cytoarchitectonics_27.png xref: MA:0000923 xref: NIF_GrossAnatomy:birnlex_1108 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001017 ! central nervous system relationship: spatially_disjoint_from UBERON:0002191 {source="ABA"} ! subiculum relationship: spatially_disjoint_from UBERON:0002728 {source="ABA"} ! entorhinal area relationship: spatially_disjoint_from UBERON:0004683 {source="ABA"} ! parasubiculum [Term] id: UBERON:0001954 name: Ammon's horn alt_id: UBERON:0003940 alt_id: UBERON:0004165 alt_id: UBERON:FMA_62493-MA_0000191-MIAA_0000114 def: "A paired structure, with mirror-image halves in the left and right sides of the brain. The hippocampus is closely associated with the cerebral cortex, and in primates is located in the medial temporal lobe, underneath the cortical surface. It is shaped like a curved tube[WP]." [Wikipedia:Hippocampus] comment: WP: Non-mammalian species do not have a brain structure that looks like the mammalian hippocampus, but they have one that is considered homologous to it. The hippocampus, as pointed out above, is essentially the medial edge of the cortex. Only mammals have a fully developed cortex, but the structure it evolved from, called the pallium, is present in all vertebrates, even the most primitive ones such as the lamprey or hagfish.[82] The pallium is usually divided into three zones: medial, lateral, and dorsal. The medial pallium forms the precursor of the hippocampus. It does not resemble the hippocampus visually, because the layers are not warped into an S shape or enwrapped by the dentate gyrus, but the homology is indicated by strong chemical and functional affinities. There is now evidence that these hippocampal-like structures are involved in spatial cognition in birds, reptiles, and fish. In birds, the correspondence is sufficiently well established that most anatomists refer to the medial pallial zone as the "avian hippocampus". The story for fish is more complex. In teleost fish (which make up the great majority of existing species), the forebrain is distorted in comparison to other types of vertebrates: most neuroanatomists believe that the teleost forebrain is essentially everted, like a sock turned inside-out, so that structures that lie in the interior, next to the ventricles, for most vertebrates, are found on the outside in teleost fish, and vice versa.[86] One of the consequences of this is that the medial pallium ("hippocampal" zone) of a typical vertebrate is thought to correspond to the lateral pallium of a typical fish. Several types of fish (particularly goldfish) have been shown experimentally to have strong spatial memory abilities, even forming "cognitive maps" of the areas they inhabit.[80] There is evidence that damage to the lateral pallium impairs spatial memory. subset: uberon_slim synonym: "ammon gyrus" EXACT [GO:0021541] synonym: "ammon horn" EXACT [NIF_GrossAnatomy:birnlex_721] synonym: "Ammon's horn" EXACT [GO:0021541] synonym: "cornu ammonis" RELATED [GO:0021541] synonym: "hippocampus" RELATED [MA:0000191] synonym: "hippocampus major" EXACT [] synonym: "hippocampus proper" EXACT [] synonym: "hippocampus proprius" EXACT [FMA:62493, FMA:TA] xref: ABA:CA xref: BM:Tel-CAM xref: BTO:0003705 xref: EFO:0000530 xref: EMAPA:19039 xref: EMAPA:19148 xref: EV:0100180 xref: FMA:62493 xref: GAID:623 xref: http://scalablebrainatlas.incf.org/services/thumbnail.php?template=ABA07&size=L&dim=2d3d&format=png®ion=CA xref: MA:0000191 xref: MAT:0000114 xref: MESH:A.08.186.211.577.405 xref: MIAA:0000114 xref: ncithesaurus:Hippocampus xref: NIF_GrossAnatomy:birnlex_721 xref: OG:0001177 xref: OpenCyc:Mx4rv3piFJwpEbGdrcN5Y29ycA is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0000349 {source="FMA"} ! limbic system relationship: part_of UBERON:0002421 {source="ABA"} ! hippocampal formation relationship: part_of UBERON:0002600 {source="FMA"} ! limbic lobe relationship: spatially_disjoint_from UBERON:0001885 {source="ABA"} ! dentate gyrus of hippocampal formation relationship: spatially_disjoint_from UBERON:0002601 {source="ABA"} ! fasciolar gyrus [Term] id: UBERON:0001955 name: epithelium of respiratory bronchiole alt_id: UBERON:FMA_62498-MA_0001773 def: "An epithelium that is part of a respiratory bronchiole [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "bronchiolus respiratorius epithelial tissue" EXACT [OBOL:automatic] synonym: "bronchiolus respiratorius epithelium" EXACT [OBOL:automatic] synonym: "epithelial tissue of bronchiolus respiratorius" EXACT [OBOL:automatic] synonym: "epithelial tissue of respiratory bronchiole" EXACT [OBOL:automatic] synonym: "epithelium of bronchiolus respiratorius" EXACT [OBOL:automatic] synonym: "respiratory bronchiole epithelial tissue" EXACT [OBOL:automatic] synonym: "respiratory bronchiole epithelium" EXACT [] xref: FMA:62498 xref: MA:0001773 xref: ncithesaurus:Respiratory_Bronchiole_Epithelium is_a: UBERON:0002051 ! epithelium of bronchiole relationship: part_of UBERON:0002188 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002188 ! respiratory bronchiole relationship: part_of UBERON:0002188 ! respiratory bronchiole [Term] id: UBERON:0001956 name: cartilage of bronchus alt_id: UBERON:FMA_62649-MA_0001835 def: "the hyaline cartilaginous structures that support the bronchi, present as irregular rings in the larger bronchi (and not as regular as in the trachea), and as small plates and islands in the smaller bronchi; as the branching continues through the bronchial tree, the amount of hyaline cartilage in the walls decreases until it is absent in the smallest bronchioles[MP]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "bronchi cartilage" EXACT [OBOL:automatic] synonym: "bronchial cartilage" EXACT [] synonym: "bronchial cartilage ring" EXACT [MP:0010988] synonym: "bronchial trunk cartilage" EXACT [OBOL:automatic] synonym: "bronchus cartilage" EXACT [] synonym: "cartilage of bronchi" EXACT [OBOL:automatic] synonym: "cartilage of bronchial trunk" EXACT [OBOL:automatic] xref: FMA:62649 xref: MA:0001835 xref: ncithesaurus:Bronchus_Cartilage xref: SCTID:278980009 is_a: UBERON:0001994 {source="MP"} ! hyaline cartilage is_a: UBERON:0003592 ! implied link automatically realized ! bronchus connective tissue is_a: UBERON:0003603 ! implied link automatically realized ! lower respiratory tract cartilage relationship: part_of UBERON:0002185 intersection_of: UBERON:0002418 ! cartilage tissue intersection_of: part_of UBERON:0002185 ! bronchus [Term] id: UBERON:0001957 name: submucosa of bronchus alt_id: UBERON:FMA_62653-MA_0001837 def: "A submucosa that is part of a bronchus [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "bronchi submucosa" EXACT [OBOL:automatic] synonym: "bronchial submucosa" EXACT [] synonym: "bronchial trunk submucosa" EXACT [OBOL:automatic] synonym: "bronchus submucosa" EXACT [] synonym: "submucosa of bronchi" EXACT [OBOL:automatic] synonym: "submucosa of bronchial trunk" EXACT [OBOL:automatic] xref: BTO:0002108 xref: FMA:62653 xref: MA:0001837 xref: ncithesaurus:Bronchus_Submucosa xref: SCTID:85546005 is_a: UBERON:0000009 ! submucosa is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure is_a: UBERON:0004777 ! implied link automatically realized ! respiratory system submucosa relationship: part_of UBERON:0002185 intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0002185 ! bronchus relationship: part_of UBERON:0002185 ! bronchus [Term] id: UBERON:0001958 name: epithelium of terminal bronchiole alt_id: UBERON:FMA_62794-MA_0001774 def: "An epithelium that is part of a terminal bronchiole [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "bronchiolus terminalis epithelial tissue" EXACT [OBOL:automatic] synonym: "bronchiolus terminalis epithelium" EXACT [OBOL:automatic] synonym: "epithelial tissue of bronchiolus terminalis" EXACT [OBOL:automatic] synonym: "epithelial tissue of terminal bronchiole" EXACT [OBOL:automatic] synonym: "epithelium of bronchiolus terminalis" EXACT [OBOL:automatic] synonym: "terminal bronchiole epithelial tissue" EXACT [OBOL:automatic] synonym: "terminal bronchiole epithelium" EXACT [] xref: FMA:62794 xref: MA:0001774 xref: ncithesaurus:Terminal_Bronchiole_Epithelium is_a: UBERON:0002051 ! epithelium of bronchiole relationship: part_of UBERON:0002187 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002187 ! terminal bronchiole relationship: part_of UBERON:0002187 ! terminal bronchiole [Term] id: UBERON:0001959 name: white pulp of spleen alt_id: UBERON:FMA_62805-MA_0000762 def: "The white pulp contains T cells, B cells and accessory cells. The function of the white pulp is to mount an immunological response to antigens within the blood. The white pulp is present in the form of a periarteriolar lymphoid sheath. This sheath contains B cell follicles and T cells. At the edge of the T zone is a region known as the marginal zone where larger lymphocytes and antigen presenting dendritic cells are located." [Wikipedia:White_pulp] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "pulpa alba" EXACT [FMA:62805, FMA:TA] synonym: "spleen white pulp" EXACT [] synonym: "splenic white pulp" EXACT [] synonym: "white pulp" EXACT [] xref: FMA:62805 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/15/Gray1191.png/200px-Gray1191.png xref: MA:0000762 xref: ncithesaurus:Splenic_White_Pulp is_a: UBERON:0000064 ! organ part is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0002106 ! spleen [Term] id: UBERON:0001960 name: periarterial lymphatic sheath alt_id: UBERON:FMA_62810-MA_0000765 comment: This class was created automatically from a combination of ontologies synonym: "PALS" EXACT [] synonym: "periarterial lymphoid sheath" EXACT [] synonym: "spleen periarteriolar lymphatic sheath" EXACT [] xref: FMA:62810 xref: MA:0000765 is_a: UBERON:0000064 ! organ part is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0001959 ! white pulp of spleen [Term] id: UBERON:0001961 name: mucosa-associated lymphoid tissue alt_id: UBERON:FMA_62819-MA_0000140 def: "diffuse system of small concentrations of lymphoid tissue found in various sites of the body such as the gastrointestinal tract, thyroid, breast, lung, salivary glands, eye, and skin[WP]. Mucosal-associated lymphoid tissue is typically found as nodules associated with mucosal epithelia with distinct internal structures including B- and T-zones for the activation of lymphocytes[GO]." [Wikipedia:Mucosa-associated_lymphoid_tissue] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "epithelio-lymphoid tissue" EXACT [] synonym: "MALT" EXACT [] synonym: "mucosa associated lymphatic tissue" EXACT [] synonym: "mucosa associated lymphoid tissue" EXACT [] synonym: "mucosa-associated lymphoid tissue" EXACT [GO:0048537] synonym: "mucosal-associated lymphatic tissue" EXACT [GO:0048537] synonym: "mucosal-associated lymphoid tissue" EXACT [GO:0048537] xref: FMA:62819 xref: MA:0000140 xref: ncithesaurus:Mucosa-Associated_Lymphoid_Tissue is_a: UBERON:0001744 ! lymphoid tissue relationship: part_of UBERON:0000344 ! mucosa [Term] id: UBERON:0001962 name: gut-associated lymphoid tissue alt_id: UBERON:FMA_62820-MA_0000136 def: "Mucosa-associated lymphoid tissue in digestive tract. includes Peyer's patches, appendix, and solitary lymph nodules[GO]." [Wikipedia:Gut-associated_lymphoid_tissue] subset: uberon_slim synonym: "GALT" RELATED [] synonym: "gut associated lymphoid tissue" EXACT [] xref: FMA:62820 xref: MA:0000136 xref: ncithesaurus:Gut_Associated_Lymphoid_Tissue is_a: UBERON:0001961 ! mucosa-associated lymphoid tissue is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: part_of UBERON:0001555 ! digestive tract [Term] id: UBERON:0001963 name: bronchial-associated lymphoid tissue alt_id: UBERON:FMA_62821-MA_0000135 comment: This class was created automatically from a combination of ontologies synonym: "BALT" RELATED [] synonym: "bronchus associated lymphoid tissue" EXACT [] xref: FMA:62821 xref: MA:0000135 xref: ncithesaurus:Bronchus-Associated_Lymphoid_Tissue is_a: UBERON:0001961 ! mucosa-associated lymphoid tissue [Term] id: UBERON:0001964 name: least splanchnic nerve alt_id: UBERON:FMA_6283-MA_0002635 def: "Thoracic splanchnic nerves are splanchnic nerves that arise from the sympathetic trunk in the thorax and travel inferiorly to provide sympathetic innervation to the abdomen. The nerves contain preganglionic sympathetic and visceral afferent fibers. There are three main thoracic splanchnic nerves: The nerve's origins can be remembered by the '4-3-2 rule', accounting for the number of ganglia giving rise to each nerve. However, different sources define the nerves in different ways, so this rule may not always be reliable. [WP,unvetted]." [Wikipedia:Least_splanchnic_nerve] comment: This class was created automatically from a combination of ontologies subset: organ_slim subset: uberon_slim synonym: "least thoracic splanchnic nerve" EXACT [] synonym: "lowest splanchnic nerve" EXACT [] synonym: "nervus splanchnicus imus" EXACT [FMA:6283, FMA:TA] synonym: "ramus renalis nervus splanchnici minoris" EXACT [FMA:6283, FMA:TA] synonym: "renal branch of lesser splanchnic nerve" EXACT [] synonym: "renal nerve" EXACT [] xref: EMAPA:29691 xref: FMA:6283 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/77/Gray838.png/200px-Gray838.png xref: MA:0002635 xref: SCTID:280506004 is_a: UBERON:0001021 ! nerve is_a: UBERON:0003429 ! implied link automatically realized ! abdomen nerve is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0002113 {source="MA"} ! kidney [Term] id: UBERON:0001965 name: substantia nigra pars compacta alt_id: UBERON:FMA_62907-MA_0001064 def: "Regional part of substantia nigra consisting of a densely packed region of cells, more or less dorsal to the pars reticulata, but extending into the pars reticulata in some species. The dominant neurotransmitter used by pars compacta neurons is dopamine. Pars compacta neurons are pigmented in many species (MM)[NIF]." [NIF_GrossAnatomy:birnlex_990, Wikipedia:Substantia_nigra_pars_compacta] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "compact part of substantia nigra" EXACT [] synonym: "pars compacta" EXACT [] synonym: "pars compacta substantiae nigrae" EXACT [FMA:62907, FMA:TA] synonym: "SNpc" EXACT [] synonym: "substantia nigra compact part" EXACT [NIF_GrossAnatomy:birnlex_990] synonym: "substantia nigra compacta" EXACT [NIF_GrossAnatomy:birnlex_990] synonym: "substantia nigra, compact part" EXACT [] xref: ABA:SNc xref: BM:MB-SNc xref: BTO:0003749 xref: FMA:62907 xref: MA:0001064 xref: NIF_GrossAnatomy:birnlex_990 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0002038 ! substantia nigra relationship: spatially_disjoint_from UBERON:0002142 {source="ABA"} ! pedunculopontine tegmental nucleus relationship: spatially_disjoint_from UBERON:0007412 {source="ABA"} ! midbrain raphe nuclei [Term] id: UBERON:0001966 name: substantia nigra pars reticulata alt_id: UBERON:FMA_62908-MA_0001066 def: "Regional part of substantia nigra consisting of loosely packed cells, generally located ventral and lateral to the pars compacta. Many cells in this region use GABA as a neurotransmitter (MM)[NLex]." [Neurolex:Substantia_nigra_pars_reticulata, Wikipedia:Pars_reticulata] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "pars reticularis substantiae nigrae" EXACT [FMA:62908, FMA:TA] synonym: "pars reticulata" EXACT [] synonym: "reticular part of substantia nigra" EXACT [] synonym: "substantia nigra, reticular part" EXACT [] xref: ABA:SNr xref: BM:MB-SNr xref: BTO:0003750 xref: FMA:62908 xref: MA:0001066 xref: NIF_GrossAnatomy:birnlex_968 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0002038 ! substantia nigra relationship: spatially_disjoint_from UBERON:0001715 {source="ABA"} ! oculomotor nuclear complex relationship: spatially_disjoint_from UBERON:0001944 {source="ABA"} ! pretectal region relationship: spatially_disjoint_from UBERON:0001947 {source="ABA"} ! red nucleus relationship: spatially_disjoint_from UBERON:0002141 {source="ABA"} ! parvocellular oculomotor nucleus relationship: spatially_disjoint_from UBERON:0002438 {source="ABA"} ! ventral tegmental nucleus relationship: spatially_disjoint_from UBERON:0002691 {source="ABA"} ! ventral tegmental area relationship: spatially_disjoint_from UBERON:0002696 {source="ABA"} ! cuneiform nucleus relationship: spatially_disjoint_from UBERON:0002722 {source="ABA"} ! trochlear nucleus relationship: spatially_disjoint_from UBERON:0002995 {source="ABA"} ! substantia nigra pars lateralis relationship: spatially_disjoint_from UBERON:0003040 {source="ABA"} ! central gray substance of midbrain [Term] id: UBERON:0001967 name: reticular lamina alt_id: UBERON:FMA_62924-MA_0001194 def: "a thin extracellular layer that sometimes lies below the basal lamina, is composed chiefly of collagenous fibers, and serves to anchor the basal lamina to underlying connective tissue." [http://mw1.merriam-webster.com/medical/reticular%20lamina, Wikipedia:Reticular_lamina] comment: todo - use GO? subset: uberon_slim synonym: "fibroreticular lamina" EXACT [] synonym: "lamina fibroreticularis" EXACT [] synonym: "reticular membrane" RELATED [] xref: FMA:62924 is_a: UBERON:0005764 {source="FMA"} ! acellular membrane relationship: part_of UBERON:0005769 {source="FMA"} ! basement membrane [Term] id: UBERON:0001968 name: semen alt_id: UBERON:FMA_62966-MA_0002522 alt_id: UBERON:FMA_62967-MA_0002523-MIAA_0000057 alt_id: UBERON:FMA_62969-MA_0002526 def: "Body substance which consists of spermatozoa and seminal plasma.[FMA]" [FMA:FMA, Wikipedia:Semen] comment: todo - check FMA subset: uberon_slim synonym: "secretion of seminal vesicle" EXACT [] synonym: "semen" BROAD [] synonym: "seminal vesicle secretion" EXACT [] synonym: "sperm" RELATED [BTO:0001230] xref: BTO:0001230 xref: FMA:62966 xref: FMA:62969 xref: GAID:1169 xref: MA:0002522 xref: MA:0002526 xref: MESH:A.12.200.732 xref: ncithesaurus:Semen xref: OpenCyc:Mx4rvgC-zpwpEbGdrcN5Y29ycA is_a: UBERON:0000463 ! portion of organism substance relationship: has_part UBERON:0006530 ! seminal fluid [Term] id: UBERON:0001969 name: blood plasma alt_id: UBERON:FMA_62970-MA_0002501-MIAA_0000052 def: "Body substance in liquid state contained in the lumen of arterial and venous trees, blood capillary and the cardiac chambers; constitutes the liquid phase of blood.[FMA]" [FMA:FMA, Wikipedia:Blood_plasma] subset: uberon_slim synonym: "plasma" EXACT [] synonym: "portion of blood plasma" EXACT [] synonym: "portion of plasma" EXACT [] xref: BTO:0000131 xref: EFO:0001905 xref: FMA:62970 xref: GAID:1178 xref: MA:0002501 xref: MAT:0000052 xref: MESH:A.12.207.152.693 xref: MIAA:0000052 xref: ncithesaurus:Plasma xref: OpenCyc:Mx4rEg4ZYrIbEduAAAAOpmP6tw is_a: UBERON:0000463 ! portion of organism substance relationship: part_of UBERON:0000178 ! blood [Term] id: UBERON:0001970 name: bile alt_id: UBERON:FMA_62971-MA_0002513 def: "." [Wikipedia:Bile] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "fel" RELATED [BTO:0000121] synonym: "gall" RELATED [BTO:0000121] xref: BTO:0000121 xref: ENVO:02000023 xref: FMA:62971 xref: GAID:1157 xref: galen:Bile xref: MA:0002513 xref: MESH:A.12.200.087 xref: ncithesaurus:Bile is_a: UBERON:0000456 ! secretion is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0001971 name: gastric juice alt_id: UBERON:FMA_62972-MA_0002519 def: "." [Wikipedia:Gastric_juice] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "stomach secretion" EXACT [] synonym: "succus gastricus" RELATED [BTO:0000501] xref: BTO:0000501 xref: FMA:62972 xref: GAID:1160 xref: galen:GastricJuice xref: MA:0002519 xref: MESH:A.12.200.307 is_a: UBERON:0000456 ! secretion [Term] id: UBERON:0001972 name: submucosa of esophagus alt_id: UBERON:FMA_62997-MA_0002724 def: "A submucosa that is part of a esophagus [Obol]." [OBOL:automatic] synonym: "esophageal submucosa" EXACT [] synonym: "esophagus submucosa" EXACT [] synonym: "gullet submucosa" EXACT [OBOL:automatic] synonym: "oesophagus submucosa" EXACT [OBOL:automatic] synonym: "submucosa of esophagus" EXACT [] synonym: "submucosa of gullet" EXACT [OBOL:automatic] synonym: "submucosa of oesophagus" EXACT [OBOL:automatic] synonym: "tela submucosa oesophageae" EXACT [FMA:62997, FMA:TA] xref: BTO:0002109 xref: FMA:62997 xref: MA:0002724 xref: SCTID:362128009 is_a: UBERON:0000009 ! submucosa is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0001043 intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0001043 ! esophagus relationship: part_of UBERON:0001096 ! wall of esophagus [Term] id: UBERON:0001973 name: substance of tooth alt_id: UBERON:FMA_63001-MA_0002540 def: "Body substance in solid state produced by odontoblasts, amyloblasts or cementoblasts.[FMA]" [FMA:63001] comment: note the asserted dual parentage. This is deliberate, pending better definitions of the distinction between substance and tissue subset: uberon_slim synonym: "portion of substance of tooth" EXACT [FMA:63001] synonym: "tooth substance" EXACT [] xref: FMA:63001 xref: MA:0002540 is_a: UBERON:0000463 ! portion of organism substance relationship: part_of UBERON:0001091 ! calcareous tooth [Term] id: UBERON:0001974 name: lamina propria of esophagus alt_id: UBERON:FMA_63050-MA_0001568 def: "A lamina propria that is part of a esophagus [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "esophagus lamina propria" EXACT [] synonym: "esophagus lamina propria mucosa" EXACT [OBOL:automatic] synonym: "esophagus lamina propria mucosae" EXACT [OBOL:automatic] synonym: "gullet lamina propria" EXACT [OBOL:automatic] synonym: "gullet lamina propria mucosa" EXACT [OBOL:automatic] synonym: "gullet lamina propria mucosae" EXACT [OBOL:automatic] synonym: "lamina propria mucosa of esophagus" EXACT [OBOL:automatic] synonym: "lamina propria mucosa of gullet" EXACT [OBOL:automatic] synonym: "lamina propria mucosa of oesophagus" EXACT [OBOL:automatic] synonym: "lamina propria mucosae of esophagus" EXACT [] synonym: "lamina propria mucosae of gullet" EXACT [OBOL:automatic] synonym: "lamina propria mucosae of oesophagus" EXACT [OBOL:automatic] synonym: "lamina propria of gullet" EXACT [OBOL:automatic] synonym: "lamina propria of oesophagus" EXACT [OBOL:automatic] synonym: "oesophagus lamina propria" RELATED [] synonym: "oesophagus lamina propria mucosa" EXACT [OBOL:automatic] synonym: "oesophagus lamina propria mucosae" EXACT [OBOL:automatic] xref: EMAPA:26987 xref: EMAPA:27003 xref: FMA:63050 xref: MA:0001568 xref: ncithesaurus:Esophageal_Lamina_Propria is_a: UBERON:0000030 ! lamina propria is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0001043 intersection_of: UBERON:0000030 ! lamina propria intersection_of: part_of UBERON:0001043 ! esophagus relationship: part_of UBERON:0002469 ! esophagus mucosa [Term] id: UBERON:0001975 name: serosa of esophagus alt_id: UBERON:FMA_63057-MA_0001571 def: "A serous membrane that is part of a esophagus [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "esophagus serosa" EXACT [] synonym: "esophagus serous membrane" EXACT [OBOL:automatic] synonym: "gullet serosa" EXACT [OBOL:automatic] synonym: "gullet serous membrane" EXACT [OBOL:automatic] synonym: "oesophagus serosa" RELATED [] synonym: "oesophagus serous membrane" EXACT [OBOL:automatic] synonym: "serosa of abdominal part of esophagus" EXACT [] synonym: "serosa of gullet" EXACT [OBOL:automatic] synonym: "serosa of oesophagus" EXACT [] synonym: "serous coat of oesophagus" EXACT [] synonym: "serous membrane of esophagus" EXACT [OBOL:automatic] synonym: "serous membrane of gullet" EXACT [OBOL:automatic] synonym: "serous membrane of oesophagus" EXACT [OBOL:automatic] synonym: "tunica serosa oesophageae" EXACT [FMA:63057, FMA:TA] xref: FMA:63057 xref: MA:0001571 is_a: UBERON:0000042 ! serous membrane is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0001043 intersection_of: UBERON:0000042 ! serous membrane intersection_of: part_of UBERON:0001043 ! esophagus relationship: part_of UBERON:0001096 ! wall of esophagus [Term] id: UBERON:0001976 name: epithelium of esophagus alt_id: UBERON:FMA_63063-MA_0001565-ZFA_0001499 comment: todo check epithelium types: in FMA: Nonkeratinizing stratified squamous epithelium; mouse has basal and squamous subtypes; in ZFA it is columnar subset: uberon_slim subset: vertebrate_core synonym: "epithelial tissue of esophagus" EXACT [OBOL:automatic] synonym: "epithelial tissue of gullet" EXACT [OBOL:automatic] synonym: "epithelial tissue of oesophagus" EXACT [OBOL:automatic] synonym: "epithelium of gullet" EXACT [OBOL:automatic] synonym: "epithelium of oesophagus" EXACT [OBOL:automatic] synonym: "esophageal epithelium" EXACT [] synonym: "esophagus epithelial tissue" EXACT [OBOL:automatic] synonym: "esophagus epithelium" EXACT [] synonym: "gullet epithelial tissue" EXACT [OBOL:automatic] synonym: "gullet epithelium" EXACT [OBOL:automatic] synonym: "oesophagus epithelial tissue" EXACT [OBOL:automatic] synonym: "oesophagus epithelium" RELATED [] xref: BTO:0001578 xref: EFO:0003041 xref: EHDAA2:0001287 xref: EMAPA:16835 xref: FMA:63063 xref: MA:0001565 xref: ncithesaurus:Esophageal_Epithelium xref: TAO:0001499 xref: ZFA:0001499 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003350 ! implied link automatically realized ! epithelium of mucosa is_a: UBERON:0003929 ! implied link automatically realized ! gut epithelium relationship: part_of UBERON:0001043 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001043 ! esophagus relationship: part_of UBERON:0002469 ! esophagus mucosa [Term] id: UBERON:0001977 name: serum alt_id: UBERON:FMA_63083-MA_0002502 def: "Body substance derived from plasma by the elimination of fibrinogen.[FMA]" [FMA:FMA, Wikipedia:Serum] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "blood serum" EXACT [] xref: BTO:0000133 xref: BTO:0001239 xref: FMA:63083 xref: MA:0002502 xref: ncithesaurus:Serum is_a: UBERON:0000463 ! portion of organism substance relationship: part_of UBERON:0001969 ! blood plasma [Term] id: UBERON:0001978 name: parenchyma of pancreas alt_id: UBERON:FMA_63120-MA_0000724 comment: This class was created automatically from a combination of ontologies synonym: "pancreas parenchyma" EXACT [] synonym: "pancreatic parenchyma" EXACT [] xref: FMA:63120 xref: MA:0000724 xref: OG:0001430 xref: SCTID:371401008 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000353 ! parenchyma relationship: part_of UBERON:0001264 ! pancreas [Term] id: UBERON:0001979 name: venule alt_id: UBERON:FMA_63130-MA_0000071 def: "Subdivision of venous tree (organ) which is directly continuous with the capillary vessel." [Wikipedia:Venule] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core xref: BTO:0002626 xref: FMA:63130 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/da/Illu_capillary.jpg/200px-Illu_capillary.jpg xref: MA:0000071 xref: MESH:A.07.231.432.952 xref: ncithesaurus:Venule xref: SCTID:341687009 xref: ZFA:0005315 is_a: UBERON:0003920 ! venous blood vessel relationship: part_of UBERON:0001009 ! circulatory system [Term] id: UBERON:0001980 name: arteriole alt_id: UBERON:FMA_63182-MA_0000063 def: "the smallest division of the artery located between the muscular arteries and the capillaries[GO]. Subdivision of arterial tree (organ) which is directly continuous with capillary vessel[FMA]." [FMA:63182, GO:0014830, Wikipedia:Arteriole] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core xref: AAO:0010253 xref: BTO:0001997 xref: FMA:63182 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/da/Illu_capillary.jpg/200px-Illu_capillary.jpg xref: MA:0000063 xref: MESH:A.07.231.114.060 xref: ncithesaurus:Arteriole xref: SCTID:337724002 xref: ZFA:0005255 is_a: UBERON:0001981 ! blood vessel is_a: UBERON:0003509 ! implied link automatically realized ! arterial blood vessel relationship: part_of UBERON:0001637 ! artery [Term] id: UBERON:0001981 name: blood vessel alt_id: UBERON:FMA_63183-XAO_0001011 def: "A vessel through which blood circulates in the body." [BTO:0001102, Wikipedia:Blood_vessel] comment: note that FMA:63183 Blood vessel is categorized as 'general anatomical term'. Suggestion to map to region of vascular tree from Terry H at JAX. Taxon notes: annelids have blood vessels, but this class is not applicable to annelids. subset: uberon_slim subset: vertebrate_core synonym: "region of vascular tree organ" EXACT [FMA:50722] synonym: "vascular tree organ region" EXACT [FMA:50722] xref: AAO:0011004 xref: AEO:0000207 xref: BTO:0001102 xref: EFO:0000817 xref: EHDAA:240 xref: EHDAA2:0003252 xref: FMA:50722 xref: FMA:63183 xref: GAID:169 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/Circulatory_System_en.svg/200px-Circulatory_System_en.svg.png xref: MA:0000060 xref: MAT:0000393 xref: MESH:A.07.231 xref: ncithesaurus:Blood_Vessel xref: NIF_GrossAnatomy:nlx_anat_090901 xref: OG:0001250 xref: OpenCyc:Mx4rvVjxlpwpEbGdrcN5Y29ycA xref: SCTID:361097006 xref: XAO:0001011 xref: ZFA:0005314 is_a: UBERON:0000055 ! vessel is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0007500 {source="EHDAA2"} ! epithelial tube open at both ends disjoint_from: UBERON:0001473 ! lymphatic vessel relationship: develops_from UBERON:0004872 ! splanchnic layer of lateral plate mesoderm relationship: develops_from UBERON:0006965 {source="GO:0072360"} ! vascular cord relationship: has_part UBERON:0000178 ! blood relationship: part_of UBERON:0004537 ! blood vasculature [Term] id: UBERON:0001982 name: capillary alt_id: UBERON:FMA_63194-MA_0000065-XAO_0000116 def: "Microvessel of the blood circulation system lined with vascular endothelial cells[ZFA]. Any of the smallest blood vessels connecting arterioles with venules." [NLM:capillary, Wikipedia:Capillary] subset: uberon_slim subset: vertebrate_core synonym: "blood capillary" EXACT [] synonym: "capillary vessel" EXACT [] xref: AAO:0010252 xref: BTO:0002045 xref: EFO:0001906 xref: EMAPA:28039 xref: EMAPA:28075 xref: EV:0100035 xref: FMA:63194 xref: MA:0000065 xref: MESH:A.07.231.432.410 xref: ncithesaurus:Capillary xref: NIF_GrossAnatomy:nlx_anat_090902 xref: OG:0001253 xref: OpenCyc:Mx4rvWEU-5wpEbGdrcN5Y29ycA xref: XAO:0000116 xref: ZFA:0005250 is_a: UBERON:0001981 ! blood vessel [Term] id: UBERON:0001983 name: crypt of lieberkuhn alt_id: UBERON:FMA_63621-MA_0001535 def: "A gland found in the epithelial lining of the small intestine and colon." [Wikipedia:Crypts_of_Lieberkuhn] comment: This class was created automatically from a combination of ontologies subset: organ_slim synonym: "intestinal gland" BROAD [Wikipedia:Crypts_of_Lieberkuhn] synonym: "lieberkuhn crypt" EXACT [] xref: FMA:63621 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/38/Small_intestine_low_mag.jpg/200px-Small_intestine_low_mag.jpg xref: MA:0001535 xref: ncithesaurus:Crypts_of_the_Lieberkuhn is_a: UBERON:0000333 ! implied link automatically realized ! intestinal gland is_a: UBERON:0002530 ! gland relationship: part_of UBERON:0001242 ! intestinal mucosa [Term] id: UBERON:0001984 name: crypt of lieberkuhn of large intestine alt_id: UBERON:FMA_63622-MA_0001544 def: "A crypt of lieberkuhn that is part of a large intestine [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "intestinal gland of large intestine" EXACT [OBOL:automatic] synonym: "large intestinal crypt of lieberkuhn" EXACT [] synonym: "large intestine crypt of lieberkuhn" EXACT [] synonym: "large intestine intestinal gland" EXACT [OBOL:automatic] synonym: "large intestine lieberkuhn crypt" EXACT [OBOL:automatic] synonym: "lieberkuhn crypt of large intestine" EXACT [OBOL:automatic] xref: FMA:63622 xref: MA:0001544 xref: ncithesaurus:Large_Intestinal_Crypt_of_the_Lieberkuhn is_a: UBERON:0001983 ! crypt of lieberkuhn relationship: part_of UBERON:0000059 intersection_of: UBERON:0001983 ! crypt of lieberkuhn intersection_of: part_of UBERON:0000059 ! large intestine relationship: part_of UBERON:0001207 ! mucosa of large intestine [Term] id: UBERON:0001985 name: corneal endothelium alt_id: UBERON:FMA_63882-MA_0001242 def: "A monolayer of specialized, flattened, mitochondria-rich cells that lines the posterior surface of the cornea and faces the anterior chamber of the eye[WP]." [Wikipedia:Corneal_endothelium] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "cornea endothelium" EXACT [OBOL:automatic] synonym: "endothelium of cornea" EXACT [OBOL:automatic] xref: FMA:63882 xref: GAID:891 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Gray871.png/200px-Gray871.png xref: MA:0001242 xref: MESH:A.09.371.060.067.318 xref: ncithesaurus:Corneal_Endothelium xref: SCTID:368827009 xref: ZFA:0001687 is_a: UBERON:0001772 ! implied link automatically realized ! corneal epithelium is_a: UBERON:0001986 ! endothelium relationship: part_of UBERON:0000964 intersection_of: UBERON:0001986 ! endothelium intersection_of: part_of UBERON:0000964 ! cornea [Term] id: UBERON:0001986 name: endothelium alt_id: UBERON:FMA_63916-ZFA_0001639 def: "A layer of epithelium that lines the heart, blood vessels (endothelium, vascular), lymph vessels (endothelium, lymphatic), and the serous cavities of the body[MESH]. Simple squamous epithelium which lines blood and lymphatic vessels and the heart[FMA]" [FMA:63916, MESH:A.10.272.491] comment: The term ‘‘endothelium’’ has been either restricted to the continuous cell layer of the vertebrates, as we are assuming here, or applied to all the cells able to adhere to the luminal surface of the vascular basement membrane (Casley-Smith 1980) subset: uberon_slim xref: BTO:0000393 xref: EFO:0002548 xref: EMAPA:18578 xref: EMAPA:19063 xref: FMA:63916 xref: GAID:520 xref: galen:Endothelium xref: MESH:A.10.272.491 xref: ncithesaurus:Endothelium xref: SCTID:27168002 is_a: UBERON:0000487 ! simple squamous epithelium [Term] id: UBERON:0001987 name: placenta alt_id: UBERON:FMA_63934-MA_0000386-MIAA_0000279 def: "organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin[GO]." [Wikipedia:Placenta] comment: In eutherians, the chorioallantoic membrane of the fetus establishes intimate contact with the adjacent vascular wall of the mother's uterus to produce the placenta, a composite structure formed in part from tissues of the fetus and in part from tissues of the mother [ISBN10:0073040584 "Vertebrates, Kardong"]. TODO - is taxon restriction too strict, even if we restrict def to allantoic placenta? - WP says: also found in some snakes and lizards with varying levels of development up to mammalian levels. Pough et al. 1992. Herpetology: Third Edition. Pearson Prentice Hall:Pearson Education, Inc., 2002. // See also: doi:10.1002/jmor.11011 subset: organ_slim subset: uberon_slim synonym: "allantoic placenta" EXACT [ISBN10:0073040584 "Vertebrates, Kardong"] synonym: "eutherian placenta" EXACT [] xref: BTO:0001078 xref: EFO:0001407 xref: EV:0100119 xref: FMA:63934 xref: GAID:379 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Placenta.jpg/200px-Placenta.jpg xref: MA:0000386 xref: MAT:0000279 xref: MESH:A.16.759 xref: MIAA:0000279 xref: ncithesaurus:Placenta xref: OG:0001266 xref: OpenCyc:Mx4rvv4zZ5wpEbGdrcN5Y29ycA xref: SCTID:181455002 is_a: UBERON:0000062 ! organ is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000478 ! extraembryonic structure is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: develops_from UBERON:0000995 {source="ISBN10:0073040584"} ! uterus relationship: develops_from UBERON:0003124 {source="Wikipedia"} ! chorion relationship: develops_from UBERON:0004340 {source="ISBN10:0073040584"} ! allantois relationship: part_of UBERON:0000474 ! female reproductive system [Term] id: UBERON:0001988 name: feces alt_id: UBERON:FMA_64183-MA_0002509-MIAA_0000053 def: "Excretion in semisolid state processed by the intestine.[FMA]" [FMA:FMA, Wikipedia:Feces] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "excrement" RELATED [BTO:0000440] synonym: "faeces" EXACT [] synonym: "fecal matter" EXACT [] synonym: "stool" EXACT [] xref: BTO:0000440 xref: ENVO:00002003 xref: FMA:64183 xref: GAID:1199 xref: galen:Feces xref: MA:0002509 xref: MAT:0000053 xref: MESH:A.12.459 xref: MIAA:0000053 xref: ncithesaurus:Feces xref: OpenCyc:Mx4rvVjJMZwpEbGdrcN5Y29ycA is_a: UBERON:0000174 ! excreta [Term] id: UBERON:0001989 name: superior cervical ganglion alt_id: UBERON:FMA_6467-MA_0001156-ZFA_0001572 def: "Trunk ganglion which is bilaterally paired and located at the anterior end of the sympathetic ganglion chain." [Wikipedia:Superior_cervical_ganglion, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "ganglion cervicale superius" RELATED [BTO:0001325] synonym: "superior cervical sympathetic ganglion" EXACT [] synonym: "superior sympathetic cervical ganglion" RELATED [] xref: BTO:0001325 xref: EFO:0001945 xref: EHDAA:8943 xref: EHDAA2:0001946 xref: EMAPA:18441 xref: FMA:6467 xref: GAID:712 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e1/Gray844.png/200px-Gray844.png xref: MA:0001156 xref: MESH:A.08.340.315.350.850 xref: SCTID:279278002 xref: TAO:0001572 xref: ZFA:0001572 is_a: UBERON:0001991 ! cervical ganglion [Term] id: UBERON:0001990 name: middle cervical ganglion alt_id: UBERON:FMA_6468-MA_0001155 def: "The middle cervical ganglion is the smallest of the three cervical ganglia, and is occasionally absent. It is placed opposite the sixth cervical vertebra, usually in front of, or close to, the inferior thyroid artery. It is probably formed by the coalescence of two ganglia corresponding to the fifth and sixth cervical nerves. It sends gray rami communicantes to the fifth and sixth cervical nerves, and gives off the middle cardiac nerve. [WP,unvetted]." [Wikipedia:Middle_cervical_ganglion] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "ganglion cervicale medium" RELATED [BTO:0000359] synonym: "middle cervical sympathetic ganglion" EXACT [] xref: BTO:0000359 xref: EHDAA:8941 xref: EHDAA2:0001180 xref: EMAPA:18440 xref: FMA:6468 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e1/Gray844.png/200px-Gray844.png xref: MA:0001155 xref: SCTID:279279005 is_a: UBERON:0001991 ! cervical ganglion [Term] id: UBERON:0001991 name: cervical ganglion alt_id: UBERON:FMA_6470-MA_0001153 def: "The cervical ganglia are paravertebral ganglia of the sympathetic nervous system. They consist of three paravertebral ganglia: superior cervical ganglion middle cervical ganglion inferior cervical ganglion. The inferior ganglion may be fused with the first thoracic ganglion to form a single structure, the stellate ganglion. Nerves emerging from cervical sympathetic ganglia contribute to the cardiac plexus, among other things. [WP,unvetted]." [Wikipedia:Cervical_ganglion] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "cervical sympathetic ganglion" EXACT [] xref: BTO:0000113 xref: EMAPA:18438 xref: FMA:6470 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e1/Gray844.png/200px-Gray844.png xref: MA:0001153 xref: SCTID:181100007 is_a: UBERON:0001807 ! paravertebral ganglion [Term] id: UBERON:0001992 name: papillary layer of dermis alt_id: UBERON:FMA_64776-MA_0000800 def: "Dense irregular connective tissue of the skin that consists of fibroblasts, various connective tissue cell types, and collagen, predominantly type III.[FMA]" [FMA:FMA, Wikipedia:Papillary_dermis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "dermis papillary layer" EXACT [] synonym: "papillary dermis" EXACT [] xref: FMA:64776 xref: MA:0000800 is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004923 ! organ component layer relationship: part_of UBERON:0002067 ! dermis [Term] id: UBERON:0001993 name: reticular layer of dermis alt_id: UBERON:FMA_64778-MA_0000801 def: "Dense irregular connective tissue that consists of elastic fibers and collagen, predominantly type I.[FMA]" [FMA:FMA, Wikipedia:Reticular_dermis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "dermis reticular layer" EXACT [] synonym: "reticular dermis" EXACT [] xref: FMA:64778 xref: MA:0000801 is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004923 ! organ component layer relationship: part_of UBERON:0002067 ! dermis [Term] id: UBERON:0001994 name: hyaline cartilage alt_id: UBERON:FMA_64783-MA_0000109 def: "Cartilage (tissue) which consists of chondrocytes and collagen, the intercellular matrix of which is an amorphous gel with a perichondrium." [Wikipedia:Hyaline_cartilage] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "hyaline cartilage tissue" EXACT [] xref: FMA:64783 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2a/Gray292.png/200px-Gray292.png xref: MA:0000109 xref: ncithesaurus:Hyaline_Cartilage xref: SCTID:39298000 xref: VAO:0000094 xref: XAO:0004029 is_a: UBERON:0002418 ! cartilage tissue [Term] id: UBERON:0001995 name: fibrocartilage alt_id: UBERON:FMA_64784-MA_0000108 def: "Cartilage tissue intermediate between hyaline cartilage and dense connective tissue; contains of abundant collagen fibers; chondrocytes often arranged in columns[VAO]. A mixture of white fibrous tissue and cartilaginous tissue in various proportions. It owes its flexibility and toughness to the former of these constituents, and its elasticity to the latter. It is the only type of cartilage that contains type I collagen in addition to the normal type II[WP]. Cartilage (tissue) which consists of chondrocytes and collagen, the intercellular matrix of which is an amorphous gel without a well-defined perichondrium[FMA]." [FMA:64784, VAO:0000103, Wikipedia:Fibrocartilage] comment: The white fibrocartilages admit of arrangement into four groups—interarticular, connecting, circumferential, and stratiform -- WP. TODO: add mineralized subset: uberon_slim xref: FMA:64784 xref: galen:Fibrocartilage xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2e/Gray295.png/200px-Gray295.png xref: MA:0000108 xref: ncithesaurus:Fibrocartilage xref: SCTID:91685003 xref: VAO:0000103 xref: XAO:0004028 is_a: UBERON:0002418 ! cartilage tissue [Term] id: UBERON:0001996 name: elastic cartilage alt_id: UBERON:FMA_64785-MA_0000107 def: "Cartilage (tissue) which consists of chondrocytes and collagen, the intercellular matrix of which consists of elastic fibers." [FMA:64785, Wikipedia:Elastic_cartilage] subset: uberon_slim synonym: "elastic cartilage tissue" EXACT [VAO:0000091] synonym: "yellow elastic cartilage" EXACT [Wikipedia:Elastic_cartilage] xref: FMA:64785 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/ca/Gray904.png/200px-Gray904.png xref: MA:0000107 xref: ncithesaurus:Elastic_Cartilage xref: VAO:0000091 xref: XAO:0004197 is_a: UBERON:0002418 {source="FMA"} ! cartilage tissue relationship: develops_from UBERON:0005863 {source="VAO"} ! cartilaginous condensation [Term] id: UBERON:0001997 name: olfactory epithelium alt_id: UBERON:0004853 alt_id: UBERON:FMA_64803-ZFA_0000554 def: "Nasal epithelium wherein ciliated olfactory receptor neurons, supporting cells, and basal cells are located." [Wikipedia:Olfactory_epithelium, ZFIN:curator] comment: Genes: V1Rs, Trpc2 present in lamprey // See also: FMA:77199 subset: uberon_slim subset: vertebrate_core synonym: "nasal cavity olfactory epithelium" EXACT [MA:0001325] synonym: "nasal epithelium" RELATED [] synonym: "nasal sensory epithelium" RELATED [] synonym: "olfactory membrane" EXACT [NIF_GrossAnatomy:birnlex_2703] synonym: "olfactory mucosa" RELATED [GAID:303] synonym: "olfactory sensory epithelium" EXACT [] synonym: "sensory olfactory epithelium" EXACT [] xref: AAO:0010158 xref: BTO:0000108 xref: EFO:0001972 xref: EHDAA:4774 xref: EHDAA2:0001228 xref: EMAPA:17606 xref: FMA:64803 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4d/Gray857.png/200px-Gray857.png xref: MA:0001325 xref: MAT:0000445 xref: ncithesaurus:Olfactory_Epithelium xref: NIF_GrossAnatomy:birnlex_2703 xref: OG:0000985 xref: SCTID:37623003 xref: TAO:0000554 xref: ZFA:0000554 is_a: UBERON:0000485 ! simple columnar epithelium is_a: UBERON:0003350 ! implied link automatically realized ! epithelium of mucosa is_a: UBERON:0005384 ! implied link automatically realized ! nasal cavity epithelium is_a: UBERON:0006934 ! sensory epithelium relationship: develops_from UBERON:0003050 ! olfactory placode relationship: part_of UBERON:0000010 ! peripheral nervous system relationship: part_of UBERON:0001826 {source="FMA"} ! nasal cavity mucosa [Term] id: UBERON:0001998 name: sternocostal joint alt_id: UBERON:FMA_64877-MA_0001512 def: "arthrodial joints, with the exception of the first, in which the cartilage is directly united with the sternum, and which is, therefore, a synarthrodial articulation." [Wikipedia:Sternocostal_joints] comment: This class was created automatically from a combination of ontologies synonym: "articulatio sternocostalis" EXACT [FMA:7954] synonym: "sternochondral joint" EXACT [] synonym: "sternocostal synovial joint" EXACT [FMA:7954] synonym: "synovial sternocostal joint" EXACT [FMA:7954] xref: FMA:7954 xref: GAID:271 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cc/Gray315.png/200px-Gray315.png xref: MA:0001512 xref: MESH:A.02.835.583.790 xref: ncithesaurus:Sternocostal_Joint xref: SCTID:361860002 is_a: UBERON:0002001 ! joint of rib is_a: UBERON:0002217 ! synovial joint relationship: part_of UBERON:0002228 ! rib [Term] id: UBERON:0001999 name: iliopsoas alt_id: UBERON:FMA_64918-MA_0002321 def: "Anatomical cluster consisting of iliacus, psoas major, psoas minor[WP]." [Wikipedia:Iliopsoas] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Hyrtl's muscle" EXACT [] synonym: "iliopsoas muscle" EXACT [BTO:0000621] xref: BTO:0000621 xref: EHDAA:9458 xref: EHDAA2:0000812 xref: EMAPA:18520 xref: FMA:64918 xref: MA:0002321 xref: ncithesaurus:Iliopsoas_Muscle xref: OG:0001005 xref: SCTID:181668001 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0002000 name: gluteal muscle alt_id: UBERON:FMA_64922-MA_0000535 def: "." [Wikipedia:Gluteal_muscle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "gluteus" RELATED [BTO:0000531] synonym: "gluteus muscle" RELATED [] xref: BTO:0000531 xref: FMA:64922 xref: MA:0000535 xref: ncithesaurus:Gluteal_Muscle is_a: UBERON:0001497 {source="FMA"} ! muscle of pelvic girdle [Term] id: UBERON:0002001 name: joint of rib alt_id: UBERON:FMA_64994-MA_0001508 def: "A skeletal joint that is part of a rib [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "rib joint" EXACT [] xref: FMA:64994 xref: MA:0001508 xref: ncithesaurus:Joint_of_the_Rib xref: SCTID:263314001 is_a: UBERON:0000982 ! skeletal joint is_a: UBERON:0005174 ! implied link automatically realized ! back organ is_a: UBERON:0005175 ! implied link automatically realized ! chest organ relationship: part_of UBERON:0002228 intersection_of: UBERON:0000982 ! skeletal joint intersection_of: part_of UBERON:0002228 ! rib [Term] id: UBERON:0002002 name: interchondral joint alt_id: UBERON:FMA_64996-MA_0001511 def: "contiguous borders of the sixth, seventh, and eighth, and sometimes those of the ninth and tenth, costal cartilages articulate with each other by small, smooth, oblong facets." [Wikipedia:Interchondral_joints] comment: This class was created automatically from a combination of ontologies synonym: "articulatio interchondralis" EXACT [FMA:7955] synonym: "articulationes interchondrales" EXACT [FMA:71378, FMA:TA] synonym: "interchondral joints" EXACT [FMA:71378] synonym: "interchondral joints set" EXACT [FMA:71378] synonym: "synovial interchondral joint" EXACT [FMA:7955] xref: FMA:64996 xref: FMA:71378 xref: FMA:7955 xref: MA:0001511 xref: SCTID:303101003 is_a: UBERON:0002001 ! joint of rib is_a: UBERON:0002217 ! synovial joint relationship: part_of UBERON:0002228 ! rib [Term] id: UBERON:0002003 name: peripheral nerve alt_id: UBERON:0003377 alt_id: UBERON:FMA_65239-MA_0000228-XAO_0000204 def: "Neural tree (organ) which is directly continuous with the neuraxis. Examples: phrenic nerve, radial nerve, ilioinguinal nerve, sciatic nerve[FMA]. The peripheral nerves include the 12 cranial nerves, the spinal nerves and roots, and what are called the autonomic nerves that are concerned specifically with the regulation of the heart muscle, the muscles in blood vessel walls, and glands[BTO]. The nerves outside of the brain and spinal cord, including the autonomic, cranial, and spinal nerves. Peripheral nerves contain non-neuronal cells and connective tissue as well as axons. The connective tissue layers include, from the outside to the inside, the epineurium, the perineurium, and the endoneurium[GAID]. A peripheral nerve, or simply nerve is an enclosed, cable-like bundle of peripheral axons (the long, slender projections of neurons). A nerve provides a common pathway for the electrochemical nerve impulses that are transmitted along each of the axons. Nerves are found only in the peripheral nervous system. In the central nervous system, the analogous structures are known as tracts[WP]." [Wikipedia:Peripheral_nerve] comment: TODO - check definition vs nerve subset: major_organ subset: uberon_slim synonym: "nerve part of peripheral nervous system" EXACT [NIF_GrossAnatomy:birnlex_1615] synonym: "peripheral nerve tree" EXACT [] xref: BTO:0001027 xref: EMAPA:25148 xref: EV:0100335 xref: FMA:65239 xref: GAID:747 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/ba/Nervous_system_diagram.png/200px-Nervous_system_diagram.png xref: MA:0000228 xref: MESH:A.08.800.800 xref: ncithesaurus:Peripheral_Nerve xref: NIF_GrossAnatomy:birnlex_1615 xref: OG:0000901 xref: SCTID:244457007 xref: XAO:0000204 is_a: UBERON:0001021 ! nerve relationship: part_of UBERON:0000010 ! peripheral nervous system [Term] id: UBERON:0002004 name: trunk of sciatic nerve alt_id: UBERON:FMA_65507-MA_0001178 comment: This class was created automatically from a combination of ontologies synonym: "sciatic nerve trunk" EXACT [] synonym: "sciatic neural trunk" EXACT [] xref: FMA:65507 xref: MA:0001178 is_a: UBERON:0001147 ! trunk of peripheral nerve [Term] id: UBERON:0002005 name: enteric nervous system alt_id: UBERON:FMA_66070-MA_0000222-MIAA_0000102-ZFA_0001155 def: "The enteric nervous system is composed of two ganglionated neural plexuses in the gut wall which form one of the three major divisions of the autonomic nervous system. The enteric nervous system innervates the gastrointestinal tract, the pancreas, and the gall bladder. It contains sensory neurons, interneurons, and motor neurons. Thus the circuitry can autonomously sense the tension and the chemical environment in the gut and regulate blood vessel tone, motility, secretions, and fluid transport. The system is itself governed by the central nervous system and receives both parasympathetic and sympathetic innervation[GO]." [Wikipedia:Enteric_nervous_system] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "PNS - enteric" EXACT [] xref: BTO:0002506 xref: EFO:0000895 xref: EMAPA:26922 xref: FMA:66070 xref: GAID:799 xref: MA:0000222 xref: MAT:0000102 xref: MESH:A.08.800.050.150 xref: MIAA:0000102 xref: NIF_GrossAnatomy:birnlex_1166 xref: TAO:0001155 xref: ZFA:0001155 is_a: UBERON:0002410 ! autonomic nervous system relationship: develops_from UBERON:0005428 {source="Wikipedia", source="ZFA"} ! vagal neural crest relationship: part_of UBERON:0002410 ! autonomic nervous system [Term] id: UBERON:0002006 name: cortex of lymph node alt_id: UBERON:FMA_66253-MA_0000740 def: "Peripheral portion of the lymph node, underneath the capsule[WP]." [Wikipedia:Cortex_of_lymph_node] subset: uberon_slim synonym: "lymph node cortex" EXACT [] xref: FMA:66253 xref: MA:0000740 xref: ncithesaurus:Lymph_Node_Cortex is_a: UBERON:0001851 ! cortex relationship: part_of UBERON:0000029 intersection_of: UBERON:0001851 ! cortex intersection_of: part_of UBERON:0000029 ! lymph node relationship: part_of UBERON:0000029 ! lymph node [Term] id: UBERON:0002007 name: medulla of lymph node alt_id: UBERON:FMA_66254-MA_0000745 def: "." [Wikipedia:Medulla_of_lymph_node] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "lymph node medulla" EXACT [] xref: FMA:66254 xref: MA:0000745 is_a: UBERON:0000958 ! medulla relationship: part_of UBERON:0000029 intersection_of: UBERON:0000958 ! medulla intersection_of: part_of UBERON:0000029 ! lymph node relationship: part_of UBERON:0000029 ! lymph node [Term] id: UBERON:0002008 name: cardiac nerve plexus alt_id: UBERON:FMA_6628-MA_0001138 def: "a plexus of nerves situated at the base of the heart that innervate the heart." [Wikipedia:Cardiac_plexus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "autonomic nerve plexus of heart" EXACT [OBOL:automatic] synonym: "autonomic plexus of heart" EXACT [OBOL:automatic] synonym: "cardiac plexus" EXACT [] synonym: "heart autonomic nerve plexus" EXACT [OBOL:automatic] synonym: "heart autonomic plexus" EXACT [OBOL:automatic] synonym: "heart visceral nerve plexus" EXACT [OBOL:automatic] synonym: "heart visceral plexus" EXACT [OBOL:automatic] synonym: "plexus cardiacus" EXACT [FMA:6628, FMA:TA] synonym: "visceral nerve plexus of heart" EXACT [OBOL:automatic] synonym: "visceral plexus of heart" EXACT [OBOL:automatic] xref: FMA:6628 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/77/Gray838.png/200px-Gray838.png xref: MA:0001138 xref: ncithesaurus:Cardiac_Nerve_Plexus xref: SCTID:280511002 is_a: UBERON:0001816 ! autonomic nerve plexus is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0000948 intersection_of: UBERON:0001816 ! autonomic nerve plexus intersection_of: part_of UBERON:0000948 ! heart [Term] id: UBERON:0002009 name: pulmonary nerve plexus alt_id: UBERON:FMA_6629-MA_0001143 def: "The pulmonary plexus is an autonomic plexus formed from pulmonary branches of vagus nerve and the sympathetic trunk. It supplies the Bronchial tree. [WP,unvetted]." [Wikipedia:Pulmonary_plexus] subset: uberon_slim synonym: "plexus pulmonalis" EXACT [FMA:6629, FMA:TA] synonym: "pulmonary plexus" EXACT [FMA:6629] xref: FMA:6629 xref: MA:0001143 xref: SCTID:280512009 is_a: UBERON:0001816 {source="MA"} ! autonomic nerve plexus relationship: part_of UBERON:0003728 {source="FMA"} ! mediastinum [Term] id: UBERON:0002010 name: celiac nerve plexus alt_id: UBERON:FMA_6630-MA_0001139 def: "The celiac plexus, also known as the solar plexus, is a complex network of nerves located in the abdomen. The celiac plexus is located near where the celiac trunk, superior mesenteric artery, and renal arteries branch from the abdominal aorta. It is behind the stomach and the omental bursa and in front of the crura of the diaphragm, on the level of the first lumbar vertebra, L1. The plexus is formed (in part) by the greater and lesser splanchnic nerves of both sides, and also parts of the right vagus nerve. The celiac plexus proper consists of the celiac ganglia with a network of interconnecting fibers. The aorticorenal ganglia are often considered to be part of the celiac ganglia, and thus, part of the plexus. [WP,unvetted]." [Wikipedia:Celiac_plexus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "celiac plexus" EXACT [] synonym: "coeliac nerve plexus" RELATED [] synonym: "coeliac plexus" EXACT [] synonym: "plexus coeliacus" EXACT [FMA:6630, FMA:TA] synonym: "plexus nervosus coeliacus" EXACT [FMA:6630, FMA:TA] xref: FMA:6630 xref: GAID:796 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/77/Gray838.png/200px-Gray838.png xref: MA:0001139 xref: MESH:A.08.800.050.050.150 xref: SCTID:362494009 is_a: UBERON:0001816 ! autonomic nerve plexus relationship: part_of UBERON:0000916 ! abdomen [Term] id: UBERON:0002011 name: thoracodorsal artery alt_id: UBERON:FMA_66320-MA_0002065 def: "The thoracodorsal artery is a branch of the subscapular artery. It travels inferiorly with the thoracodorsal nerve and supplies the latissimus dorsi. [WP,unvetted]." [Wikipedia:Thoracodorsal_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:66320 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Latissimus_dorsi.png/200px-Latissimus_dorsi.png xref: MA:0002065 xref: ncithesaurus:Thoracodorsal_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0002012 name: pulmonary artery alt_id: UBERON:FMA_66326-MA_0002031 def: "The pulmonary arteries carry blood from heart to the lungs. They are the only arteries (other than umbilical arteries in the fetus) that carry deoxygenated blood. In the human heart, the pulmonary trunk (pulmonary artery or main pulmonary artery) begins at the base of the right ventricle. It is short and wide - approximately 5 cm (2 inches) in length and 3 cm (1.2 inches) in diameter. It then branches into two pulmonary arteries (left and right), which deliver deoxygenated blood to the corresponding lung. [WP,unvetted]." [Wikipedia:Pulmonary_artery] subset: uberon_slim synonym: "pulmonary arterial tree" EXACT [] synonym: "pulmonary arterial tree organ part" EXACT [] xref: AAO:0010221 xref: BTO:0000778 xref: EFO:0001399 xref: EHDAA:4351 xref: EHDAA2:0001575 xref: EMAPA:17008 xref: FMA:66326 xref: GAID:505 xref: galen:PulmonaryArtery xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Alveoli_diagram.png/200px-Alveoli_diagram.png xref: MA:0002031 xref: MESH:A.07.231.114.715 xref: ncithesaurus:Pulmonary_Artery xref: OG:0000982 xref: OpenCyc:Mx4rvVjbIpwpEbGdrcN5Y29ycA xref: SCTID:181380003 xref: XAO:0004162 is_a: UBERON:0001637 ! implied link automatically realized ! artery relationship: part_of UBERON:0008886 intersection_of: UBERON:0001637 ! artery intersection_of: part_of UBERON:0008886 ! pulmonary vascular system relationship: develops_from UBERON:0002061 {source="Wikipedia"} ! truncus arteriosus [Term] id: UBERON:0002013 name: superior hypogastric nerve plexus alt_id: UBERON:FMA_6642-MA_0001142 def: "The superior hypogastric plexus (in older texts, hypogastric plexus or presacral nerve) is a plexus of nerves situated on the vertebral bodies below the bifurcation of the aorta. [WP,unvetted]." [Wikipedia:Superior_hypogastric_plexus] comment: Check relationship with generic hypogastric nerve/plexus subset: uberon_slim synonym: "hypogastric plexus" RELATED [] synonym: "nervus presacralis" EXACT [FMA:6642, FMA:TA] synonym: "plexus hypogastricus superior" EXACT [FMA:6642, FMA:TA] synonym: "presacral nerve" EXACT [] synonym: "superior hypogastric plexus" EXACT [] xref: EMAPA:19274 xref: FMA:6642 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/77/Gray838.png/200px-Gray838.png xref: MA:0001142 xref: SCTID:244484008 is_a: UBERON:0001816 ! autonomic nerve plexus relationship: adjacent_to UBERON:0001075 ! body of vertebra relationship: overlaps UBERON:0005303 ! hypogastric nerve [Term] id: UBERON:0002014 name: inferior hypogastric nerve plexus alt_id: UBERON:FMA_6643-MA_0001141 def: "The inferior hypogastric plexus (pelvic plexus in some texts) is a plexus of nerves that supplies the viscera of the pelvic cavity. The inferior hypogastric plexus is a paired structure, with each situated on the side of the rectum in the male, and at the sides of the rectum and vagina in the female. [WP,unvetted]." [Wikipedia:Inferior_hypogastric_plexus] comment: Check relationship with generic hypogastric nerve/plexus subset: uberon_slim synonym: "inferior hypogastric plexus" EXACT [] synonym: "pelvic nerve plexus" EXACT [] synonym: "pelvic plexus" EXACT [] synonym: "plexus hypogastricus inferior" EXACT [FMA:6643, FMA:TA] synonym: "plexus nervosus pelvicus" EXACT [FMA:6643, FMA:TA] synonym: "plexus pelvicus" EXACT [FMA:6643, FMA:TA] xref: EMAPA:19275 xref: FMA:6643 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/77/Gray838.png/200px-Gray838.png xref: MA:0001141 xref: ncithesaurus:Inferior_Hypogastric_Nerve_Plexus xref: SCTID:192608000 is_a: UBERON:0001816 ! autonomic nerve plexus relationship: overlaps UBERON:0005303 ! hypogastric nerve [Term] id: UBERON:0002015 name: kidney capsule alt_id: UBERON:FMA_66610-MA_0000370 def: "The renal capsule is a tough fibrous layer surrounding the kidney and covered in a thick layer of ' adipose tissue. It provides some protection from trauma and damage. The renal capsule relates to the other layers in the following order (moving from innermost to outermost): renal medulla renal cortex renal capsule perinephric fat (or 'perirenal fat') renal fascia paranephric fat (or 'pararenal fat') peritoneum (anteriorly), and transversalis fascia (posteriorly). [WP,unvetted]." [Wikipedia:Kidney_capsule] subset: uberon_slim synonym: "capsule of kidney" EXACT [] synonym: "fibrous capsule of kidney" EXACT [FMA:66610] synonym: "renal capsule" EXACT [GO:0072127] xref: EMAPA:18679 xref: FMA:66610 xref: galen:CapsuleOfKidney xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/69/Illu_kidney.jpg/200px-Illu_kidney.jpg xref: MA:0000370 xref: ncithesaurus:Renal_Capsule xref: SCTID:243657006 is_a: UBERON:0002384 ! connective tissue is_a: UBERON:0003567 ! implied link automatically realized ! abdomen connective tissue is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure disjoint_from: UBERON:0001230 ! glomerular capsule relationship: part_of UBERON:0002113 ! kidney [Term] id: UBERON:0002016 name: pulmonary vein alt_id: UBERON:FMA_66643-MA_0002206-XAO_0000394 def: "Pulmonary veins are blood vessels that transport blood from the lungs to the heart[GO]." [Wikipedia:Pulmonary_vein] subset: uberon_slim synonym: "pulmonary venous tree organ part" EXACT [] xref: AAO:0010521 xref: BTO:0001799 xref: EHDAA:2629 xref: EHDAA2:0001579 xref: EMAPA:18645 xref: FMA:66643 xref: GAID:543 xref: galen:PulmonaryVein xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Alveoli_diagram.png/200px-Alveoli_diagram.png xref: MA:0002206 xref: MESH:A.07.231.908.713 xref: ncithesaurus:Pulmonary_Vein xref: OG:0001133 xref: XAO:0000394 is_a: UBERON:0001638 ! implied link automatically realized ! vein relationship: part_of UBERON:0008886 intersection_of: UBERON:0001638 ! vein intersection_of: part_of UBERON:0008886 ! pulmonary vascular system relationship: develops_from UBERON:0002061 ! truncus arteriosus [Term] id: UBERON:0002017 name: portal vein alt_id: UBERON:FMA_66645-MA_0002198-XAO_0000392 def: "A vein that conducts blood from the digestive organs, spleen, pancreas, and gallbladder to the liver[BTO]." [BTO:0001792] subset: uberon_slim synonym: "portal venous tree organ part" EXACT [] xref: BTO:0001792 xref: EHDAA:6510 xref: EHDAA2:0001485 xref: EMAPA:17349 xref: FMA:66645 xref: GAID:540 xref: galen:PortalVein xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/Gray591.png/200px-Gray591.png xref: MA:0002198 xref: MESH:A.07.231.908.670.567 xref: ncithesaurus:Portal_Vein xref: OG:0000656 xref: OpenCyc:Mx4rv_bem5wpEbGdrcN5Y29ycA xref: SCTID:362064007 xref: XAO:0000392 is_a: UBERON:0001638 ! vein relationship: develops_from UBERON:0005487 {source="Wikipedia:Vitelline_vein"} ! vitelline vein [Term] id: UBERON:0002018 name: synovial membrane alt_id: UBERON:FMA_66762-MA_0000114 def: "Soft tissue that lines the non-cartilaginous surfaces within joints with cavities (synovial joints)." [Wikipedia:Synovial_membrane] subset: uberon_slim synonym: "membrana synovialis capsulae articularis" RELATED [GAID:264] synonym: "stratum synoviale" EXACT [FMA:66762, FMA:TA] synonym: "synovial layer" EXACT [FMA:66762] synonym: "synovial sheath" RELATED [FMA:General_anatomical_term] synonym: "synovium" EXACT [BTO:0001823, OG:0001282] xref: AEO:0000181 xref: BTO:0001823 xref: EFO:0001393 xref: EHDAA2:0003181 xref: EV:0100143 xref: FMA:66762 xref: GAID:264 xref: galen:SynovialMembrane xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5d/Synovium.png/200px-Synovium.png xref: MA:0000114 xref: MESH:A.02.835.583.443.800 xref: ncithesaurus:Synovial_Membrane xref: OG:0001282 xref: SCTID:361828005 is_a: UBERON:0000042 ! serous membrane is_a: UBERON:0000486 {source="EHDAA2"} ! multilaminar epithelium is_a: UBERON:0006915 ! implied link automatically realized ! stratified squamous epithelium relationship: attached_to UBERON:0001484 {source="GAID"} ! articular capsule relationship: part_of UBERON:0002217 {source="EHDAA2"} ! synovial joint relationship: part_of UBERON:0007616 ! synovial tissue [Term] id: UBERON:0002019 name: spinal accessory nerve alt_id: UBERON:FMA_6720-MA_0001088 def: "In mice, the spinal branch of this motor nerve innervates the trapezius and the sternocleidomastoid muscles. The cranial branch joins the vagus nerve and innervates the same targets as the vagus nerve[GO]." [Wikipedia:Spinal_accessory_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "accessory nerve" EXACT [] synonym: "Accessory nerve [XI]" EXACT [] synonym: "accessory XI" EXACT [EHDAA2:0000106] synonym: "accessory XI nerve" EXACT [] synonym: "cervical accessory nerve" EXACT [] synonym: "cranial nerve XI" EXACT [NIF_GrossAnatomy:birnlex_812] synonym: "eleventh cranial nerve" EXACT [NIF_GrossAnatomy:birnlex_812] synonym: "nervus accessorius [xi]" EXACT [FMA:6720, FMA:TA] synonym: "pars spinalis nervus accessorius" EXACT [FMA:6720, FMA:TA] synonym: "spinal accessory nerve tree" EXACT [] synonym: "spinal part of accessory nerve" EXACT [] synonym: "Willis' nerve" EXACT [] xref: AAO:0010476 xref: EHDAA:2855 xref: EHDAA2:0000106 xref: EMAPA:17159 xref: EMAPA:17265 xref: FMA:6720 xref: GAID:825 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5e/Gray791.png/200px-Gray791.png xref: MA:0001088 xref: MESH:A.08.800.800.120.060 xref: ncithesaurus:Accessory_Nerve xref: NIF_GrossAnatomy:birnlex_812 xref: OG:0000699 xref: OpenCyc:Mx4rwTEwI5wpEbGdrcN5Y29ycA xref: SCTID:362469008 xref: XAO:0004214 is_a: UBERON:0001785 ! cranial nerve [Term] id: UBERON:0002020 name: gray matter of neuraxis alt_id: UBERON:FMA_67242-MA_0001112 def: "Heterogeneous cluster of neural somas in the brain and the spinal cord." [Wikipedia:Gray_matter] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "gray mater" RELATED [ZFA:0001681] synonym: "gray matter" EXACT [] synonym: "grey matter" EXACT [] synonym: "grey substance" EXACT [] synonym: "substantia grisea" EXACT [FMA:67242, FMA:TA] xref: AEO:0000136 xref: EHDAA2:0003136 xref: FMA:67242 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d2/Spinal_nerve.svg/200px-Spinal_nerve.svg.png xref: MA:0001112 xref: ncithesaurus:Gray_Matter xref: OpenCyc:Mx4rwDdKMpwpEbGdrcN5Y29ycA xref: ZFA:0001681 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001017 ! central nervous system [Term] id: UBERON:0002021 name: occipital lobe alt_id: UBERON:FMA_67325-MA_0000913-ZFA_0001414 def: "Occipital lobe is the one of five lobes of the cerebral hemisphere which occupies the posterior-most portion of the hemisphere. Anteriorly, it shares an arbitrary border with the parietal lobe and temporal lobe. Medially, it is bounded by the longitudinal cerebral fissure." [Wikipedia:Occipital_lobe] subset: uberon_slim synonym: "occipital cortex" EXACT [] synonym: "occipital neocortex" EXACT [DHB:Ocx] synonym: "regio occipitalis" EXACT [FMA:67325, FMA:TA] xref: BTO:0000293 xref: EFO:0000915 xref: EV:0100170 xref: FMA:67325 xref: GAID:678 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray727_occipital_lobe.png/200px-Gray727_occipital_lobe.png xref: MA:0000913 xref: MAT:0000507 xref: MESH:A.08.186.211.730.885.213.571 xref: ncithesaurus:Occipital_Lobe xref: NIF_GrossAnatomy:birnlex_1136 xref: OpenCyc:Mx4rv9OFy5wpEbGdrcN5Y29ycA xref: SCTID:180923002 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: adjacent_to UBERON:0001871 ! temporal lobe relationship: adjacent_to UBERON:0001872 ! parietal lobe relationship: part_of UBERON:0001950 ! neocortex [Term] id: UBERON:0002022 name: insula alt_id: UBERON:FMA_67329-MA_0000909 def: "The insula is the one of five lobes of the cerebral hemisphere. It lies in the depths of the lateral fissure and is covered by portions of the frontal, parietal and temporal lobes." [Wikipedia:Insula] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "central lobe" EXACT [] synonym: "cortex of island" EXACT [] synonym: "insula lobule" EXACT [] synonym: "insular cortex" EXACT [] synonym: "insular lobe" EXACT [] synonym: "insular region" EXACT [] synonym: "insulary cortex" RELATED [BTO:0001105] synonym: "island of reil" EXACT [] synonym: "lobus insularis" EXACT [FMA:67329, FMA:TA] xref: BM:Tel-Cx-Ins xref: BTO:0001105 xref: EV:0100172 xref: FMA:67329 xref: MA:0000909 xref: ncithesaurus:Central_Lobe xref: NIF_GrossAnatomy:birnlex_1117 xref: OpenCyc:Mx4rvpK5WZwpEbGdrcN5Y29ycA xref: SCTID:279201009 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001950 ! neocortex [Term] id: UBERON:0002023 name: claustrum alt_id: UBERON:FMA_67440-MA_0000888 def: "Subdivision located in the telencephalon which is a member of the anatomical set 'Basal ganglia'. The claustrum is made up primarily of cellular neural tissue (gray matter), and is located lateral to the caudate nucleus and external capsule and medial to the insula." [Wikipedia:Claustrum] subset: uberon_slim synonym: "dorsal claustrum" EXACT [] synonym: "dorsal portion of claustrum" EXACT [] xref: ABA:CLA xref: BM:Tel-Cl xref: BTO:0004292 xref: EV:0100183 xref: FMA:67440 xref: MA:0000888 xref: ncithesaurus:Claustrum xref: NIF_GrossAnatomy:birnlex_1522 xref: SCTID:279410004 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001869 ! cerebral hemisphere relationship: part_of UBERON:0002420 ! basal ganglion relationship: spatially_disjoint_from UBERON:0002887 {source="ABA"} ! basal amygdaloid nucleus relationship: spatially_disjoint_from UBERON:0006107 {source="ABA"} ! basolateral amygdaloid nuclear complex [Term] id: UBERON:0002024 name: internal carotid nerve plexus alt_id: UBERON:FMA_67533-MA_0001162 def: "The internal carotid plexus (carotid plexus) is situated on the lateral side of the internal carotid artery, and in the plexus there occasionally exists a small gangliform swelling, the carotid ganglion, on the under surface of the artery. Postganglionic sympathetic fibres ascend from the superior cervical ganglion, along the walls of the internal carotid artery, to enter the internal carotid plexus. These fibres then distribute to deep structures, which include the levator palpebrae superioris and pupillary dilator muscles. Some of the fibres from the internal carotid plexus converge to form the deep petrosal nerve. The internal carotid plexus communicates with the semilunar ganglion, the abducent nerve, and the sphenopalatine ganglion; it distributes filaments to the wall of the carotid artery, and also communicates with the tympanic branch of the glossopharyngeal nerve. [WP,unvetted]." [Wikipedia:Internal_carotid_nerve_plexus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "internal carotid plexus" EXACT [] synonym: "plexus caroticus internus" EXACT [FMA:67533, FMA:TA] xref: FMA:67533 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a5/Gray840.png/200px-Gray840.png xref: MA:0001162 xref: ncithesaurus:Internal_Carotid_Nerve_Plexus xref: SCTID:280509006 is_a: UBERON:0001816 ! autonomic nerve plexus [Term] id: UBERON:0002025 name: stratum basale of epidermis alt_id: UBERON:FMA_67540-MA_0000803 def: "Deepest layer of the layers of the epidermis[WP]." [Wikipedia:Stratum_germinativum] subset: uberon_slim synonym: "basal cell layer of epidermis" EXACT [FMA:67540] synonym: "epidermis basal layer" RELATED [] synonym: "epidermis stratum basale" EXACT [] synonym: "epidermis stratum germinativum" RELATED [] synonym: "Malpighian layer" RELATED [BTO:0000438] synonym: "stratum basalis of epidermis" EXACT [] synonym: "stratum germinativum" EXACT [] xref: AAO:0010598 xref: BTO:0000438 xref: FMA:67540 xref: MA:0000803 xref: SCTID:419481005 xref: XAO:0000041 xref: ZFA:0001180 is_a: UBERON:0000119 ! cell layer is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001003 ! epidermis [Term] id: UBERON:0002026 name: stratum spinosum of epidermis alt_id: UBERON:FMA_67542-MA_0000807 def: "a layer of the epidermis found between the stratum granulosum and stratum basale. Has cells that produce and secrete bipolar lipids which prevent evaporation, helping to 'water-proof' the skin. Keratinization begins in the stratum spinosum." [Wikipedia:Stratum_spinosum] synonym: "epidermis prickle cell layer" RELATED [] synonym: "epidermis stratum spinosum" EXACT [] synonym: "prickle cell layer" RELATED [BTO:0000435] synonym: "prickle cell layer of epidermis" EXACT [FMA:67542] synonym: "squamous cell layer of epidermis" EXACT [] synonym: "stratum malphighii" EXACT [] synonym: "stratum spinosum" EXACT [] xref: BTO:0000435 xref: FMA:67542 xref: MA:0000807 xref: ncithesaurus:Stratum_Spinosum xref: SCTID:420086000 is_a: UBERON:0000119 ! cell layer is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: adjacent_to UBERON:0002025 ! stratum basale of epidermis relationship: adjacent_to UBERON:0002069 ! stratum granulosum of epidermis relationship: part_of UBERON:0001003 ! epidermis [Term] id: UBERON:0002027 name: stratum corneum of epidermis alt_id: UBERON:FMA_67545-MA_0000804 def: "outermost layer of the epidermis, composed of large, flat, polyhedral, plate-like envelopes filled with keratin, which is made up of dead cells that have migrated up from the stratum granulosum." [Wikipedia:Stratum_corneum] comment: this skin layer is composed mainly of dead cells that lack nuclei. As these dead cells slough off on the surface in the thin air-filled stratum disjunctum, they are continuously replaced by new cells from the stratum germinativum (basale). In the human forearm, for example, about 1300 cells/cm2/hr are shed. This outer layer that is sloughed off is also known as the stratum dysjunctum. Cells of the stratum corneum contain keratin, a protein that helps keep the skin hydrated by preventing water evaporation. These cells can also absorb water, further aiding in hydration, and explaining why humans and other animals experience wrinkling of the skin on the fingers and toes ("pruning") when immersed in water for prolonged periods. In addition, this layer is responsible for the "spring back" or stretchy properties of skin. A weak glutenous protein bond pulls the skin back to its natural shape. The thickness of the stratum corneum varies according to the amount of protection and/or grip required by a region of the body. For example, the hands are typically used to grasp objects, requiring the palms to be covered with a thick stratum corneum. In a similar manner, the sole of the foot is prone to injury, and so it is protected with a thick stratum corneum layer. In general, the stratum corneum contains 15 to 20 layers of dead cells. The stratum corneum has a thickness between 10 and 40 μm. n reptiles, the stratum corneum is permanent, and is replaced only during times of rapid growth, in a process called ecdysis or moulting. The stratum corneum in reptiles contains beta-keratin, which provides a much more rigid skin layer. synonym: "cornified layer" EXACT [] synonym: "epidermis stratum corneum" EXACT [] synonym: "horny layer" RELATED [BTO:0000344] synonym: "horny layer of epidermis" EXACT [FMA:67545] synonym: "stratum corneum" EXACT [] xref: AAO:0010597 xref: BTO:0000344 xref: FMA:67545 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/20/Skinlayers.png/200px-Skinlayers.png xref: MA:0000804 xref: ncithesaurus:Stratum_Corneum xref: SCTID:361695002 is_a: UBERON:0003055 ! periderm [Term] id: UBERON:0002028 name: hindbrain alt_id: UBERON:FMA_67687-MA_0000195-MIAA_0000107-XAO_0000015-ZFA_0000029 def: "The most posterior of the three principal regions of the brain. In mammals and birds the hindbrain is divided into a rostral metencephalon and a caudal myelencephalon. In zebrafish, with the exception of the cerebellum, the ventral remainder of the metencephalon can be separated only arbitrarily from the more caudal myelencephalic portion of the medulla oblongata (From: Neuroanatomy of the Zebrafish Brain)[ZFA]. Organ component of neuraxis that has as its parts the pons, cerebellum and medulla oblongata[FMA]." [Wikipedia:Hindbrain, ZFA:0000029, ZFIN:curator] comment: in MA, brainstem and hindbrain and part-of siblings under brain, consistent with FMA and NIF. See also notes for cerebellum. We weaken the relation in ABA to overlaps subset: uberon_slim subset: vertebrate_core synonym: "rhombencephalon" RELATED [] xref: AAO:0010150 xref: ABA:HB xref: BTO:0000672 xref: EFO:0000923 xref: EHDAA:3514 xref: EHDAA:6487 xref: EHDAA2:0000746 xref: EMAPA:16916 xref: EMAPA:18632 xref: FMA:67687 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/54/EmbryonicBrain.svg/200px-EmbryonicBrain.svg.png xref: MA:0000195 xref: MAT:0000107 xref: MESH:A.08.186.211.132.810 xref: MIAA:0000107 xref: ncithesaurus:Hind-Brain xref: NIF_GrossAnatomy:birnlex_942 xref: OG:0000070 xref: TAO:0000029 xref: XAO:0000015 xref: ZFA:0000029 is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain is_a: UBERON:0004732 ! segmental subdivision of nervous system relationship: develops_from UBERON:0003076 {source="XAO"} ! posterior neural tube relationship: overlaps UBERON:0002298 {notes="modified-source-relation", source="ABA"} ! brainstem relationship: part_of UBERON:0000955 {source="ZFA"} ! brain relationship: spatially_disjoint_from UBERON:0001891 {source="ABA"} ! midbrain relationship: spatially_disjoint_from UBERON:0001894 {source="ABA"} ! diencephalon [Term] id: UBERON:0002029 name: epithelium of gall bladder alt_id: UBERON:FMA_67711-MA_0001632 def: "the simple columnar epithelial lining of the gall bladder." [MP:0009492] comment: This class was created automatically from a combination of ontologies synonym: "biliary epithelium" RELATED [] synonym: "epithelial tissue of gall bladder" EXACT [OBOL:automatic] synonym: "epithelial tissue of gallbladder" EXACT [OBOL:automatic] synonym: "epithelium of gallbladder" EXACT [OBOL:automatic] synonym: "gall bladder epithelial tissue" EXACT [OBOL:automatic] synonym: "gall bladder epithelium" EXACT [] synonym: "gallbladder epithelial tissue" EXACT [OBOL:automatic] synonym: "gallbladder epithelium" EXACT [OBOL:automatic] xref: BTO:0001449 xref: FMA:67711 xref: MA:0001632 xref: ncithesaurus:Gallbladder_Epithelium is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000485 ! simple columnar epithelium is_a: UBERON:0005911 ! implied link automatically realized ! endo-epithelium relationship: part_of UBERON:0002110 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002110 ! gallbladder relationship: part_of UBERON:0002110 ! gallbladder [Term] id: UBERON:0002030 name: nipple alt_id: UBERON:FMA_67771-MA_0000796 def: "Projection of skin containing the outlets for 15-20 lactiferous ducts arranged cylindrically around the tip." [FMA:67771, Wikipedia:Nipple] comment: FMA makes this part of the breast, whereas in MA it is part of the mammary gland. We assert both these for now, but the MA assertion is probably too strong, and a different relationship type should be used. subset: uberon_slim synonym: "papilla mammae" EXACT [MP:0009723] synonym: "papilla of breast" EXACT [] synonym: "papillary part of breast" EXACT [] synonym: "teat" EXACT [] synonym: "thele" EXACT [MP:0009723] synonym: "thelium" EXACT [MP:0009723] xref: BTO:0000821 xref: FMA:67771 xref: GAID:35 xref: galen:Nipple xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/59/Female_nipple_profile.jpg/200px-Female_nipple_profile.jpg xref: MA:0000796 xref: MESH:A.01.236.500 xref: ncithesaurus:Nipple xref: OpenCyc:Mx4rvVjKi5wpEbGdrcN5Y29ycA xref: SCTID:265780004 is_a: UBERON:0000475 ! organism subdivision is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: develops_from UBERON:0008425 {source="Stedmans"} ! mammary ridge relationship: part_of UBERON:0000310 {source="FMA"} ! breast relationship: part_of UBERON:0001911 {source="MA"} ! mammary gland [Term] id: UBERON:0002031 name: epithelium of bronchus alt_id: UBERON:FMA_67782-MA_0001839 def: "An epithelium that is part of a bronchus [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "bronchi epithelial tissue" EXACT [OBOL:automatic] synonym: "bronchi epithelium" EXACT [OBOL:automatic] synonym: "bronchial epithelium" EXACT [] synonym: "bronchial trunk epithelial tissue" EXACT [OBOL:automatic] synonym: "bronchial trunk epithelium" EXACT [OBOL:automatic] synonym: "bronchus epithelial tissue" EXACT [OBOL:automatic] synonym: "bronchus epithelium" EXACT [] synonym: "epithelial tissue of bronchi" EXACT [OBOL:automatic] synonym: "epithelial tissue of bronchial trunk" EXACT [OBOL:automatic] synonym: "epithelial tissue of bronchus" EXACT [OBOL:automatic] synonym: "epithelium of bronchi" EXACT [OBOL:automatic] synonym: "epithelium of bronchial trunk" EXACT [OBOL:automatic] xref: BTO:0001845 xref: EFO:0000307 xref: FMA:67782 xref: MA:0001839 xref: ncithesaurus:Bronchial_Epithelium is_a: UBERON:0000485 ! simple columnar epithelium is_a: UBERON:0004815 ! implied link automatically realized ! lower respiratory tract epithelium relationship: part_of UBERON:0002185 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002185 ! bronchus relationship: part_of UBERON:0002185 ! bronchus [Term] id: UBERON:0002032 name: areola alt_id: UBERON:FMA_67796-MA_0000788 def: "Subdivision of breast which consists of skin, connective tissue and smooth muscle bundle and modified sebaceous glands and which surrounds the nipple.[FMA]" [FMA:FMA, Wikipedia:Areola] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:67796 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Brustwarze.JPG/200px-Brustwarze.JPG xref: MA:0000788 xref: ncithesaurus:Areola xref: OpenCyc:Mx4rvrcOL5wpEbGdrcN5Y29ycA is_a: UBERON:0000475 ! organism subdivision is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001911 ! mammary gland [Term] id: UBERON:0002033 name: arrector muscle of hair alt_id: UBERON:FMA_67821-MA_0000778 def: "tiny muscle fiber attached to each hair follicle, which contract to make the hairs stand on end, causing goose bumps. They exist in most mammals including humans." [Wikipedia:Arrector_pili] subset: uberon_slim synonym: "arrector pili" EXACT [FMA:67821, MA:0000778] synonym: "arrector pili muscle" EXACT [EMAPA:26779, MP:0010679] synonym: "arrector pili smooth muscle" EXACT [MA:0000778] synonym: "arrector pilli" EXACT [MP:0010679] synonym: "arrector pilli muscle" EXACT [MP:0010679] xref: BTO:0005132 xref: EMAPA:26771 xref: EMAPA:26775 xref: EMAPA:26779 xref: FMA:67821 xref: MA:0000778 xref: SCTID:319910005 is_a: UBERON:0001135 ! smooth muscle tissue relationship: attached_to UBERON:0002073 ! hair follicle [Term] id: UBERON:0002034 name: suprachiasmatic nucleus alt_id: UBERON:FMA_67883-MA_0000843-ZFA_0000441 def: "The suprachiasmatic nucleus, or nuclei, (SCN), a tiny region on the brain's midline in a shallow impression of the optic chiasm, is responsible for controlling endogenous circadian rhythms. The neuronal and hormonal activities it generates regulate many different body functions over a 24-hour period. The SCN, pine cone shaped and the size of a grain of rice, interacts with many other regions of the brain. It contains several cell types and several different peptides and neurotransmitters. [WP,unvetted]." [Wikipedia:Suprachiasmatic_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "SCN" RELATED [BTO:0001822] synonym: "suprachiasmatic nucleus of hypothalamus" EXACT [] xref: ABA:SCH xref: BM:Die-Hy-SCN xref: BTO:0001822 xref: EFO:0002475 xref: EV:0100228 xref: FMA:67883 xref: GAID:645 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/HypothalamicNuclei.PNG/200px-HypothalamicNuclei.PNG xref: MA:0000843 xref: MESH:A.08.186.211.730.385.357.342.625 xref: ncithesaurus:Suprachiasmatic_Nucleus xref: NIF_GrossAnatomy:birnlex_1325 xref: OG:0000036 xref: SCTID:369132004 xref: TAO:0000441 xref: XAO:0004072 xref: ZFA:0000441 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0006568 ! implied link automatically realized ! hypothalamic nucleus is_a: UBERON:0007251 ! implied link automatically realized ! preoptic nucleus relationship: part_of UBERON:0001928 ! preoptic area relationship: part_of UBERON:0002272 ! medial zone of hypothalamus relationship: spatially_disjoint_from UBERON:0001934 {source="ABA"} ! dorsomedial nucleus of hypothalamus relationship: spatially_disjoint_from UBERON:0002219 {source="ABA"} ! subfornical organ relationship: spatially_disjoint_from UBERON:0002625 {source="ABA"} ! median preoptic nucleus relationship: spatially_disjoint_from UBERON:0002689 {source="ABA"} ! supraoptic crest relationship: spatially_disjoint_from UBERON:0002690 {source="ABA"} ! anteroventral periventricular nucleus relationship: spatially_disjoint_from UBERON:0007626 {source="ABA"} ! subparaventricular zone [Term] id: UBERON:0002035 name: medial preoptic nucleus alt_id: UBERON:FMA_67890-MA_0000840 def: "The medial preoptic nucleus is bounded laterally by the lateral preoptic nucleus, and medially by the preoptic periventricular nucleus. It releases gonadotropin-releasing hormone, controls copulation in males, and is larger in males than in females.[WP,unvetted]." [Wikipedia:Medial_preoptic_nucleus#Medial_preoptic_nucleus, Wikipedia:Sexually_dimorphic_nucleus] subset: uberon_slim synonym: "medial preoptic hypothalamic nucleus" EXACT [] xref: ABA:MPN xref: FMA:67890 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/HypothalamicNuclei.PNG/200px-HypothalamicNuclei.PNG xref: MA:0000840 xref: NIF_GrossAnatomy:birnlex_706 xref: SCTID:369128005 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0006568 ! implied link automatically realized ! hypothalamic nucleus is_a: UBERON:0007251 ! implied link automatically realized ! preoptic nucleus relationship: part_of UBERON:0007769 {source="MA"} ! medial preoptic region relationship: spatially_disjoint_from UBERON:0001935 {source="ABA"} ! ventromedial nucleus of hypothalamus relationship: spatially_disjoint_from UBERON:0002206 {source="ABA"} ! mammillary body relationship: spatially_disjoint_from UBERON:0002625 {source="ABA"} ! median preoptic nucleus relationship: spatially_disjoint_from UBERON:0002634 {source="ABA"} ! anterior nucleus of hypothalamus relationship: spatially_disjoint_from UBERON:0002706 {source="ABA"} ! posterior nucleus of hypothalamus [Term] id: UBERON:0002036 name: striated muscle tissue alt_id: UBERON:FMA_67905-MA_0002438 def: "Tissue which consists of striated muscle fibers surrounded by endomysium. Examples: Skeletal muscle tissue, Cardiac muscle tissue[FMA]." [FMA:67905, Wikipedia:Striated_muscle] subset: uberon_slim synonym: "striated muscle" EXACT [] xref: AAO:0010762 xref: AEO:0000140 xref: EHDAA2:0003140 xref: FMA:67905 xref: galen:StriatedMuscle xref: MA:0002438 xref: ncithesaurus:Striated_Muscle_Tissue xref: OpenCyc:Mx4rwAoze5wpEbGdrcN5Y29ycA xref: WBbt:0005779 is_a: UBERON:0002385 ! muscle tissue [Term] id: UBERON:0002037 name: cerebellum alt_id: UBERON:FMA_67944-FMA_78469-MA_0000196-MA_0000198-MIAA_0000110-XAO_0003098-XAO_0003099-ZFA_0000100-ZFA_0000110 def: "Part of the metencephalon that lies in the posterior cranial fossa behind the brain stem. It is concerned with the coordination of movement[MESH]. A large dorsally projecting part of the brain concerned especially with the coordination of muscles and the maintenance of bodily equilibrium, situated between the brain stem and the back of the cerebrum , and formed in humans of two lateral lobes and a median lobe[BTO]. Brain structure derived from the anterior hindbrain, and perhaps including posterior midbrain. The cerebellum plays a role in somatic motor function, the control of muscle tone, and balance[ZFA]." [BTO:0000232, https://sourceforge.net/tracker/index.php?func=detail&aid=3291162&group_id=76834&atid=1205376, ISBN:3764351209, MESH:A.08.186.211.132.810.428.200, ZFA:0000100] comment: note that almost all AOs agree that the cerebellum is part of the hindbrain (sometimes specifically part of the metencephalon, which, when present, is part of the hindbrain). However, ABA has cerebellum and brain stem as partof siblings, with the hindbrain part of the brainstem subset: uberon_slim subset: vertebrate_core synonym: "epencephalon-1" EXACT [] xref: AAO:0010485 xref: ABA:CB xref: BM:CB xref: BTO:0000232 xref: EFO:0000327 xref: EMAPA:17787 xref: EV:0100293 xref: FMA:67944 xref: GAID:595 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a7/Cerebellum_NIH.png/200px-Cerebellum_NIH.png xref: MA:0000198 xref: MAT:0000110 xref: MESH:A.08.186.211.132.810.428.200 xref: MIAA:0000110 xref: ncithesaurus:Cerebellum xref: NIF_GrossAnatomy:birnlex_1489 xref: OG:0000024 xref: OpenCyc:Mx4rvl1eipwpEbGdrcN5Y29ycA xref: SCTID:180924008 xref: TAO:0000100 xref: XAO:0003098 xref: ZFA:0000100 is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon relationship: part_of UBERON:0001895 {source="FMA", source="MA"} ! metencephalon relationship: part_of UBERON:0002028 {source="NIF", source="ZFA"} ! hindbrain relationship: spatially_disjoint_from UBERON:0001893 {source="ABA"} ! telencephalon relationship: spatially_disjoint_from UBERON:0002298 {source="ABA"} ! brainstem [Term] id: UBERON:0002038 name: substantia nigra alt_id: UBERON:FMA_67947-MA_0000210 def: "Subdivision of the midbrain anterior to the midbrain tegmentum which contains darkly pigmented neurons[FMA]." [FMA:67947, Wikipedia:Substantia_nigra] comment: TODO: In BTO and NIF, part of basal ganglion which is part of telencephalon - but this is inconsistent with being part of midbrain, if these are spatially disjoint, as in ABA subset: uberon_slim synonym: "nucleus of basis pedunculi" EXACT [] synonym: "Soemmering's substance" EXACT [] synonym: "substancia nigra" RELATED [Wikipedia:Substantia_nigra] xref: BTO:0000143 xref: EFO:0000922 xref: EV:0100247 xref: FMA:67947 xref: GAID:581 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5f/Midbraincrosssection.png/200px-Midbraincrosssection.png xref: MA:0000210 xref: MAT:0000504 xref: MESH:A.08.186.211.132.659.687 xref: ncithesaurus:Substantia_Nigra xref: NIF_GrossAnatomy:birnlex_789 xref: SCTID:279286002 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0009661 ! implied link automatically realized ! midbrain nucleus is_a: UBERON:0009663 ! implied link automatically realized ! telencephalic nucleus relationship: part_of UBERON:0001891 {source="multiple"} ! midbrain relationship: part_of UBERON:0002420 {source="NIF"} ! basal ganglion [Term] id: UBERON:0002039 name: inferior phrenic vein alt_id: UBERON:FMA_68068-MA_0002195 def: "The Inferior Phrenic Veins drain the diaphragm and follow the course of the inferior phrenic arteries; the right ends in the inferior vena cava; the left is often represented by two branches, one of which ends in the left renal or suprarenal vein, while the other passes in front of the esophageal hiatus in the diaphragm and opens into the inferior vena cava. [WP,unvetted]." [Wikipedia:Inferior_phrenic_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:68068 xref: MA:0002195 xref: SCTID:286500002 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0002040 name: bronchial artery alt_id: UBERON:FMA_68109-MA_0001923 def: "In human anatomy, the bronchial arteries help supply the lungs with oxygenated blood. Although there is much variation, there are usually two bronchial arteries that run to the left lung, and one to the right lung. [WP,unvetted]." [Wikipedia:Bronchial_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "bronchial arterial tree" EXACT [] xref: EMAPA:18608 xref: FMA:68109 xref: GAID:477 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a7/Gray1032.png/200px-Gray1032.png xref: MA:0001923 xref: MESH:A.07.231.114.158 xref: ncithesaurus:Bronchial_Artery xref: OpenCyc:Mx4r4sy0UiNbEd2AAAACs6hRXg xref: SCTID:244247009 is_a: UBERON:0004573 ! systemic artery relationship: supplies UBERON:0002048 ! lung [Term] id: UBERON:0002041 name: terminal bronchus alt_id: UBERON:FMA_68416-MA_0000440 comment: This class was created automatically from a combination of ontologies subset: organ_slim xref: FMA:68416 xref: MA:0000440 is_a: UBERON:0002185 ! bronchus [Term] id: UBERON:0002042 name: endothelium of lymphatic vessel alt_id: UBERON:FMA_68444-MA_0000750 def: "An endothelium that is part of a lymphatic vessel [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies subset: vertebrate_core synonym: "endothelium of lymph vessel" EXACT [OBOL:automatic] synonym: "lymph vessel endothelium" EXACT [OBOL:automatic] synonym: "lymphatic endothelium" EXACT [BTO:0004303] synonym: "lymphatic vessel endothelium" EXACT [] xref: BTO:0004303 xref: FMA:68444 xref: MA:0000750 xref: MESH:A.10.272.491.332 xref: ncithesaurus:Lymphatic_Vessel_Endothelium xref: ZFA:0005258 is_a: UBERON:0001986 ! endothelium is_a: UBERON:0004852 ! implied link automatically realized ! cardiovascular system endothelium relationship: part_of UBERON:0001473 intersection_of: UBERON:0001986 ! endothelium intersection_of: part_of UBERON:0001473 ! lymphatic vessel relationship: part_of UBERON:0001473 ! lymphatic vessel [Term] id: UBERON:0002043 name: dorsal raphe nucleus alt_id: UBERON:FMA_68462-ZFA_0000366 def: "A large raphe nucleus extending from the anterior part of the pons through the mesencephalon; its neurons are serotoninergic[NIF]. The dorsal raphe nucleus is a part of the raphe nucleus and consists of rostral and caudal subdivisions. The rostral aspect of the dorsal raphe is further divided into interfascicular, ventral, ventrolateral and dorsal subnuclei. The projections of the dorsal raphe have been found to vary topographically, and thus the subnuclei differ in their projections. An increased number of cells in the lateral aspects of the dorsal raphe is characteristic of humans and other primates. [WP,unvetted]." [https://sourceforge.net/tracker/?func=detail&atid=440764&aid=3248146&group_id=36855, NIF_GrossAnatomy:birnlex_982, Wikipedia:Dorsal_raphe_nucleus] comment: TODO check dorsal vs inferior. ZF has no pons. subset: uberon_slim subset: vertebrate_core synonym: "cell group b7" EXACT [FMA:68462] synonym: "dorsal nucleus of the raphe" EXACT [BrainInfo:512, FMA:68462] synonym: "dorsal nucleus raphe" EXACT [FMA:68462] synonym: "dorsal raphe" EXACT [NIF_GrossAnatomy:birnlex_982] synonym: "inferior raphe nucleus" EXACT [GO:0021724] synonym: "nucleus raphes dorsalis" EXACT [BrainInfo:512, BTO:0002434] synonym: "nucleus raphes posterior" EXACT [FMA:TA] synonym: "nucleus raphes posterior" RELATED [BTO:0002434] synonym: "posterior raphe nucleus" EXACT [FMA:68462] synonym: "posterior raphe nucleus" RELATED [GO:0021724] xref: ABA:DR xref: BM:MB-DR xref: BTO:0002434 xref: EFO:0001919 xref: FMA:68462 xref: http://upload.wikimedia.org/wikipedia/en/thumb/c/c6/Drn.png/200px-Drn.png xref: MA:0002980 xref: NIF_GrossAnatomy:birnlex_982 xref: TAO:0000366 xref: ZFA:0000366 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0007415 ! implied link automatically realized ! nucleus of midbrain reticular formation relationship: part_of UBERON:0002639 {source="Wikipedia"} ! midbrain reticular formation relationship: part_of UBERON:0004684 {source="Wikipedia"} ! raphe nuclei relationship: spatially_disjoint_from UBERON:0002145 {source="ABA"} ! interpeduncular nucleus [Term] id: UBERON:0002044 name: ventral nucleus of posterior commissure alt_id: UBERON:FMA_68464-MA_0001072 comment: This class was created automatically from a combination of ontologies synonym: "Darkshevich's nucleus" EXACT [] synonym: "nucleus of darkschewitsch" EXACT [] xref: ABA:ND xref: BM:MB-D xref: FMA:68464 xref: MA:0001072 xref: NIF_GrossAnatomy:birnlex_896 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0007414 ! implied link automatically realized ! nucleus of midbrain tegmentum relationship: part_of UBERON:0000936 ! posterior commissure relationship: part_of UBERON:0001943 ! midbrain tegmentum relationship: spatially_disjoint_from UBERON:0002551 {source="ABA"} ! interstitial nucleus of cajal [Term] id: UBERON:0002045 name: cuneate nucleus alt_id: UBERON:FMA_68465-MA_0001035 def: "One of the dorsal column nuclei, the cuneate nucleus is a wedge-shaped nucleus in the closed part of the medulla oblongata. It contains cells that give rise to the cuneate tubercle, visible on the posterior aspect of the medulla. It lies laterally to the gracile nucleus and medial to the spinal trigeminal nucleus in the medulla. [WP,unvetted]." [Wikipedia:Cuneate_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Burdach's nucleus" EXACT [] synonym: "burdachs nucleus" EXACT [NIF_GrossAnatomy:birnlex_2640] synonym: "cuneate" EXACT [NIF_GrossAnatomy:birnlex_2640] xref: ABA:CU xref: BM:Me-Cu xref: FMA:68465 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Gray691.png/200px-Gray691.png xref: MA:0001035 xref: ncithesaurus:Cuneate_Nucleus xref: NIF_GrossAnatomy:birnlex_2640 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0007635 ! implied link automatically realized ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 ! medulla oblongata relationship: spatially_disjoint_from UBERON:0002161 {source="ABA"} ! gracile nucleus [Term] id: UBERON:0002046 name: thyroid gland alt_id: UBERON:FMA_68805-FMA_9603-MA_0000129-MA_0000726-MIAA_0000081-XAO_0000162-ZFA_0001072 def: "A two-lobed endocrine gland found in all vertebrates, located in front of and on either side of the trachea in humans, and producing various hormones, such as triiodothyronine and calcitonin[BTO]. A highly vascular endocrine gland consisting of two lobes, one on either side of the trachea, joined by a narrow isthmus; it produces the thyroid hormones which are concerned in regulating the metabolic rate of the body[GAID]." [BTO:0001379, GAID:465, Wikipedia:Thyroid] subset: organ_slim subset: uberon_slim synonym: "thyroid" EXACT [] xref: AAO:0010544 xref: BTO:0001379 xref: EFO:0000861 xref: EHDAA:2148 xref: EHDAA:2975 xref: EHDAA2:0002028 xref: EMAPA:17068 xref: EMAPA:18698 xref: EMAPA:18827 xref: EV:0100133 xref: FMA:9603 xref: GAID:465 xref: galen:ThyroidGland xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c6/Illu_endocrine_system.jpg/200px-Illu_endocrine_system.jpg xref: MA:0000129 xref: MAT:0000081 xref: MESH:A.06.407.900 xref: MIAA:0000081 xref: ncithesaurus:Thyroid_Gland xref: OG:0000418 xref: OpenCyc:Mx4rvVjLT5wpEbGdrcN5Y29ycA xref: SCTID:181117000 xref: XAO:0000162 is_a: UBERON:0002368 ! implied link automatically realized ! endocrine gland is_a: UBERON:0002530 ! gland is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: develops_from UBERON:0007689 ! thyroid diverticulum relationship: part_of UBERON:0000949 ! endocrine system [Term] id: UBERON:0002047 name: pontine raphe nucleus alt_id: UBERON:FMA_68875-MA_0001022 def: "The Pontine raphe nucleus is one of the raphe nuclei. It is located in the pontine tegmentum. [WP,unvetted]." [Wikipedia:Pontine_raphe_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "raphe of pons" EXACT [] synonym: "raphe pontis" EXACT [FMA:68875, FMA:TA] synonym: "raphe pontis nucleus" RELATED [] xref: ABA:RPO xref: FMA:68875 xref: MA:0001022 xref: NIF_GrossAnatomy:birnlex_1110 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0006331 ! implied link automatically realized ! brainstem nucleus is_a: UBERON:0009662 ! implied link automatically realized ! hindbrain nucleus relationship: part_of UBERON:0003023 ! pontine tegmentum relationship: part_of UBERON:0004684 {source="Wikipedia"} ! raphe nuclei relationship: spatially_disjoint_from UBERON:0002148 {source="ABA"} ! locus ceruleus relationship: spatially_disjoint_from UBERON:0002267 {source="ABA"} ! laterodorsal tegmental nucleus relationship: spatially_disjoint_from UBERON:0002587 {source="ABA"} ! nucleus subceruleus relationship: spatially_disjoint_from UBERON:0003004 {source="ABA"} ! median raphe nucleus [Term] id: UBERON:0002048 name: lung alt_id: UBERON:FMA_68877-FMA_7195-MA_0000415-MIAA_0000135-XAO_0000119 def: "Respiration organ present in all air-breathing animals whose principal function is to transport oxygen from the atmosphere into the bloodstream, and to release carbon dioxide from the bloodstream into the atmosphere[WP]. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the esophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax[GO]." [BTO:0000763, Wikipedia:Lung] comment: respiration organ in all air-breathing animals, including most tetrapods, a few fish and a few snails. In mammals and the more complex life forms, the two lungs are located in the chest on either side of the heart. Their principal function is to transport oxygen from the atmosphere into the bloodstream, and to release carbon dioxide from the bloodstream into the atmosphere. This exchange of gases is accomplished in the mosaic of specialized cells that form millions of tiny, exceptionally thin-walled air sacs called alveoli. // Avian lungs do not have alveoli as mammalian lungs do, they have Faveolar lungs. They contain millions of tiny passages known as para-bronchi, connected at both ends by the dorsobronchi // Snakes and limbless lizards typically possess only the right lung as a major respiratory organ; the left lung is greatly reduced, or even absent. Amphisbaenians, however, have the opposite arrangement, with a major left lung, and a reduced or absent right lung [WP] subset: major_organ subset: organ_slim subset: uberon_slim xref: AAO:0000275 xref: AAO:0010567 xref: BTO:0000763 xref: EFO:0000934 xref: EHDAA:1554 xref: EHDAA:2205 xref: EHDAA2:0001042 xref: EMAPA:16728 xref: EV:0100042 xref: FMA:7195 xref: GAID:345 xref: galen:Lung xref: MA:0000415 xref: MAT:0000135 xref: MESH:A.04.411 xref: MIAA:0000135 xref: ncithesaurus:Lung xref: OpenCyc:Mx4rvVjKy5wpEbGdrcN5Y29ycA xref: SCTID:181216001 xref: XAO:0000119 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000117 {source="GO"} ! respiratory tube is_a: UBERON:0000171 ! respiration organ is_a: UBERON:0005178 ! implied link automatically realized ! thoracic cavity organ relationship: develops_from UBERON:0000118 ! lung bud relationship: part_of UBERON:0000170 {note="some species only have a single lung"} ! pair of lungs relationship: part_of UBERON:0002224 ! thoracic cavity [Term] id: UBERON:0002049 name: vasculature alt_id: UBERON:FMA_69050-XAO_0001010-ZFA_0001079 def: "an interconnected tubular multi-tissue structure contains fluid that is actively transported around the organism[ZFA]. Examples: vasculature of lung, vasculature of face." [ZFA:0005249] comment: see also: vascular system subset: uberon_slim subset: vertebrate_core synonym: "vascular network" EXACT [FMA:69050] xref: BTO:0003718 xref: FMA:69050 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/Circulatory_System_en.svg/200px-Circulatory_System_en.svg.png xref: ZFA:0005249 is_a: UBERON:0000477 {source="FMA"} ! anatomical cluster relationship: composed_primarily_of UBERON:0000055 ! vessel relationship: part_of UBERON:0007798 ! vascular system [Term] id: UBERON:0002050 name: embryonic structure alt_id: UBERON:FMA_69067-XAO_0003042-ZFA_0001105 def: "Anatomical structure that is part of an embryo." [BTO:0000174, ZFIN:curator] comment: Note in FMA embryo is_a embryonic structure subset: inconsistent_with_fma subset: vertebrate_core synonym: "developing embryonic structure" EXACT [FBbt:00004208] synonym: "developing structure" RELATED [] synonym: "embryonale Struktur" RELATED [BTO:0000174] synonym: "embryonic anatomical structure" EXACT [EHDAA2:0003169] xref: AAO:0000138 xref: AEO:0000125 xref: BILA:0000034 xref: BTO:0000174 xref: EFO:0000461 xref: EHDAA2:0003169 xref: FBbt:00004208 xref: FMA:69067 xref: GAID:407 xref: MESH:A.16 xref: ncithesaurus:Embryonic_Structure xref: SCTID:667009 xref: TAO:0001105 xref: XAO:0003042 xref: ZFA:0001105 is_a: UBERON:0000061 ! implied link automatically realized ! anatomical structure is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 intersection_of: UBERON:0000061 ! anatomical structure intersection_of: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0002051 name: epithelium of bronchiole alt_id: UBERON:FMA_69077-MA_0001772 def: "An epithelium that is part of a bronchiole [Obol]." [OBOL:automatic] comment: Note that in FMA2 and FMA3, lobular bronchiole is an exact synonym of bronchiole; however there are two distinct terms for the corresponding epithelium. synonym: "bronchiolar epithelium" EXACT [BTO:0001866] synonym: "bronchiole epithelial tissue" EXACT [OBOL:automatic] synonym: "bronchiole epithelium" EXACT [] synonym: "epithelial tissue of bronchiole" EXACT [OBOL:automatic] synonym: "epithelial tissue of lobular bronchiole" EXACT [OBOL:automatic] synonym: "epithelium of lobular bronchiole" EXACT [OBOL:automatic] synonym: "lobular bronchiole epithelial tissue" EXACT [OBOL:automatic] synonym: "lobular bronchiole epithelium" EXACT [OBOL:automatic] xref: BTO:0001866 xref: FMA:62497 xref: FMA:69077 xref: MA:0001772 xref: ncithesaurus:Bronchiole_Epithelium is_a: UBERON:0000115 ! implied link automatically realized ! lung epithelium is_a: UBERON:0000485 ! simple columnar epithelium is_a: UBERON:0003350 ! implied link automatically realized ! epithelium of mucosa is_a: UBERON:0004802 {source="BTO"} ! respiratory tract epithelium is_a: UBERON:0004815 ! implied link automatically realized ! lower respiratory tract epithelium relationship: part_of UBERON:0002186 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002186 ! bronchiole relationship: part_of UBERON:0005039 ! mucosa of bronchiole [Term] id: UBERON:0002052 name: capsule of adrenal gland alt_id: UBERON:FMA_69087-MA_0000117 comment: This class was created automatically from a combination of ontologies synonym: "adrenal gland capsule" EXACT [] xref: FMA:69087 xref: MA:0000117 xref: ncithesaurus:Adrenal_Gland_Capsule is_a: UBERON:0003893 ! capsule relationship: surrounds UBERON:0002369 intersection_of: UBERON:0003893 ! capsule intersection_of: surrounds UBERON:0002369 ! adrenal gland relationship: surrounds UBERON:0002369 ! adrenal gland [Term] id: UBERON:0002053 name: zona glomerulosa of adrenal gland alt_id: UBERON:FMA_69225-MA_0001891 def: "The zona glomerulosa of the adrenal gland is the most superficial layer of the adrenal cortex, lying directly beneath the adrenal gland's capsule. Its cells are ovoid in shape and are arranged in clusters or arches. In response to increased potassium levels, renin or decreased blood flow to the kidneys, cells of the zona glomerulosa produce and secrete the mineralocorticoid aldosterone into the blood as part of the renin-angiotensin system. Aldosterone regulates the body's concentration of electrolytes, primarily sodium and potassium, by acting on the distal convoluted tubule of kidney nephrons to: increase sodium reabsorption increase potassium excretion increase water reabsorption through osmosis The enzyme aldosterone synthase acts in this location. [WP,unvetted]." [Wikipedia:Zona_glomerulosa] subset: uberon_slim synonym: "adrenal gland zona glomerulosa" EXACT [MA:0001891] synonym: "glomerulosa" RELATED [BTO:0000048] synonym: "zona glomerulosa" EXACT [] synonym: "zona glomerulosa of suprarenal gland" EXACT [] xref: BTO:0000048 xref: FMA:69225 xref: GAID:449 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5c/Gray1185.png/200px-Gray1185.png xref: MA:0001891 xref: MESH:A.06.407.071.140.960 xref: SCTID:21476003 is_a: UBERON:0009753 {source="MA"} ! adrenal gland cortex zone relationship: part_of UBERON:0001235 ! adrenal cortex [Term] id: UBERON:0002054 name: zona fasciculata of adrenal gland alt_id: UBERON:FMA_69234-MA_0001890 def: "The zona fasciculata constitutes the middle zone of the adrenal cortex, sitting directly beneath the zona glomerulosa. Constituent cells are organized into bundles or 'fascicles'. The zona fasciculata chiefly produces glucocorticoids (mainly cortisol in the human), which regulates the metabolism of glucose, especially in times of stress (e.g. , part of the fight-or-flight response). This tissue also generates a small amount of weak androgens. In certain animals such as rodents, the lack of 17alpha-hydroxylase results in the synthesis of corticosterone instead of cortisol. Steroid-producing adrenal tumours and hyperplasias of the zona fasciculata result in excess cortisol production and are the cause for adrenal Cushing's syndrome. The genetic disorder McCune-Albright syndrome can also present Cushing's syndrome in affected patients. [WP,unvetted]." [Wikipedia:Zona_fasciculata] subset: uberon_slim synonym: "adrenal gland zona fasciculata" EXACT [MA:0001890] synonym: "zona fasciculata" EXACT [] synonym: "zona fasciculata of suprarenal gland" EXACT [] xref: BTO:0000050 xref: FMA:69234 xref: GAID:448 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5c/Gray1185.png/200px-Gray1185.png xref: MA:0001890 xref: MESH:A.06.407.071.140.950 xref: SCTID:56069004 is_a: UBERON:0009753 {source="MA"} ! adrenal gland cortex zone relationship: part_of UBERON:0001235 ! adrenal cortex [Term] id: UBERON:0002055 name: zona reticularis of adrenal gland alt_id: UBERON:FMA_69236-MA_0001892 def: "The zona reticularis is the innermost layer of the adrenal cortex, lying deep to the zona fasciculata and superficial to the adrenal medulla. The cells are arranged cords that project in different directions giving a net-like appearance (L. reticulum - net). Cells in the zona reticularis produce precursor androgens including dehydroepiandrosterone (DHEA) and androstenedione from cholesterol. DHEA is further converted to DHEA-sulfate via a sulfotransferase, SULT2A1. These precursors are not further converted in the adrenal cortex as the cells lack 3β-hydroxysteroid dehydrogenase. Instead, they are released into the blood stream and taken up in the testis and ovaries to produce testosterone and the estrogens respectively. In some animals like rodents, the reticularis layer does contain 3β-hydroxysteroid dehydrogenase, which along with other enzymes present results in the production of corticosteroids like the fasciculata. In rodents too, the lack of 17alpha-hydroxylase results in the synthesis of corticosterone instead of cortisol as in the human. [WP,unvetted]." [Wikipedia:Zona_reticularis] subset: uberon_slim synonym: "adrenal gland zona reticularis" EXACT [MA:0001892] synonym: "zona reticularis" EXACT [] synonym: "zona reticularis of suprarenal gland" EXACT [] xref: FMA:69236 xref: GAID:450 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5c/Gray1185.png/200px-Gray1185.png xref: MA:0001892 xref: MESH:A.06.407.071.140.970 xref: SCTID:47325000 is_a: UBERON:0009753 {source="MA"} ! adrenal gland cortex zone relationship: part_of UBERON:0001235 ! adrenal cortex [Term] id: UBERON:0002056 name: inferior suprarenal artery alt_id: UBERON:FMA_69264-MA_0002056 def: "Each renal artery gives off some small inferior suprarenal branches to the suprarenal gland, the ureter, and the surrounding cellular tissue and muscles. [WP,unvetted]." [Wikipedia:Inferior_suprarenal_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:69264 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/61/Gray1121.png/200px-Gray1121.png xref: MA:0002056 xref: ncithesaurus:Inferior_Suprarenal_Artery xref: SCTID:303426004 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0002057 name: phrenic artery alt_id: UBERON:FMA_69330-MA_0002019 def: "The inferior phrenic arteries are two small vessels, which supply the diaphragm but present much variety in their origin. They may arise separately from the front of the aorta, immediately above the celiac artery, or by a common trunk, which may spring either from the aorta or from the celiac artery. Sometimes one is derived from the aorta, and the other from one of the renal arteries; they rarely arise as separate vessels from the aorta. They diverge from one another across the crura of the diaphragm, and then run obliquely upward and lateralward upon its under surface. The left phrenic passes behind the esophagus, and runs forward on the left side of the esophageal hiatus. The right phrenic passes behind the inferior vena cava, and along the right side of the foramen which transmits that vein. Near the back part of the central tendon each vessel divides into a medial and a lateral branch. The medial branch curves forward, and anastomoses with its fellow of the opposite side, and with the musculophrenic and pericardiacophrenic arteries. The lateral branch passes toward the side of the thorax, and anastomoses with the lower intercostal arteries, and with the musculophrenic. The lateral branch of the right phrenic gives off a few vessels to the inferior vena cava; and the left one, some branches to the esophagus. Each vessel gives off superior suprarenal branches to the suprarenal gland of its own side. The spleen and the liver also receive a few twigs from the left and right vessels respectively. [WP,unvetted]." [Wikipedia:Phrenic_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:69330 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/af/Gray531.png/200px-Gray531.png xref: MA:0002019 xref: ncithesaurus:Phrenic_Artery is_a: UBERON:0004573 ! systemic artery [Term] id: UBERON:0002058 name: ciliary ganglion alt_id: UBERON:FMA_6964-MA_0001136 def: "The ciliary ganglion is a parasympathetic ganglion located in the posterior orbit. It measures 1–2 millimeters in diameter and contains approximately 2,500 neurons. Preganglionic axons from the Edinger-Westphal nucleus form synapses with these cells. The postganglionic axons run in the short ciliary nerves and innervate two eye muscles: the sphincter pupillae constricts the pupil, know as Miosis. The opposite, Mydriasis, is the dilation of the pupil. the ciliaris muscle contracts, releasing tension on the Zonular Fibers, making the lens more convex, also known as accommodation. Both of these muscles are involuntary – they are controlled by the autonomic nervous system. It is one of four parasympathetic ganglia of the head and neck.. [WP,unvetted]." [Wikipedia:Ciliary_ganglion] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: EFO:0002559 xref: EHDAA:5623 xref: EHDAA2:0000251 xref: EMAPA:18222 xref: FMA:6964 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Augennerven.jpg/200px-Augennerven.jpg xref: MA:0001136 xref: NIF_GrossAnatomy:nlx_anat_100304 xref: OG:0000805 xref: SCTID:279281007 is_a: UBERON:0001808 ! parasympathetic ganglion [Term] id: UBERON:0002059 name: submandibular ganglion alt_id: UBERON:FMA_6966-MA_0002470 def: "The submandibular ganglion (or submaxillary ganglion in older texts) is part of the human autonomic nervous system. It is one of four parasympathetic ganglia of the head and neck.. [WP,unvetted]." [Wikipedia:Submandibular_ganglion] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Blandin`s ganglion" RELATED [BTO:0001318] synonym: "ganglion submandibulare" RELATED [BTO:0001318] synonym: "lingual ganglion" RELATED [https://sourceforge.net/tracker/index.php?func=detail&aid=2979467&group_id=76834&atid=1205376, MA:0002470] synonym: "maxillary ganglion" RELATED [MA:0002470] synonym: "submaxillary ganglion" RELATED [MA:0002470] xref: BTO:0001318 xref: EHDAA:6710 xref: EHDAA2:0001942 xref: FMA:6966 xref: http://upload.wikimedia.org/wikipedia/en/thumb/8/83/Gray778.png/200px-Gray778.png xref: MA:0002470 xref: ncithesaurus:Submandibular_Ganglion is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0001808 {source="MA"} ! parasympathetic ganglion relationship: part_of UBERON:0001736 ! submandibular gland [Term] id: UBERON:0002060 name: femoral artery alt_id: UBERON:FMA_70248-MA_0001951 def: "The femoral artery is a large artery in the muscles of the thigh. It is a continuation of external iliac artery where it enters the femoral triangle at the mid inguinal point behind the inguinal ligament. It leaves femoral triangle through apex beneath the sartorius muscle. It enters the popliteal fossa by passing through the 5th osseo-aponeurotic(adductor hiatus) opening of adductor magnus where it becomes the Popliteal Artery. [WP,unvetted]." [Wikipedia:Femoral_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: AAO:0010222 xref: BTO:0001624 xref: FMA:70248 xref: GAID:494 xref: galen:FemoralArtery xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Gray546.png/200px-Gray546.png xref: MA:0001951 xref: MESH:A.07.231.114.351 xref: ncithesaurus:Femoral_Artery xref: OpenCyc:Mx4rwHMI05wpEbGdrcN5Y29ycA xref: SCTID:244332003 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0002061 name: truncus arteriosus alt_id: UBERON:FMA_70301-MA_0000103 def: "The truncus arteriosus and bulbus cordis are divided by the aorticopulmonary septum. The truncus arteriosus gives rise to the ascending aorta and the pulmonary trunk. The bulbus cordis gives rise to the smooth parts (outflow tract) of the left and right ventricles." [Wikipedia:Truncus_arteriosus_(embryology)] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: EHDAA2:0004143 xref: FMA:70301 xref: GAID:554 xref: MA:0000103 xref: MESH:A.07.541.278.930 xref: OpenCyc:Mx4rquH9YKgNEdudWQACs5b6Bw xref: SCTID:308828009 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0000948 ! heart relationship: part_of UBERON:0004145 ! outflow tract [Term] id: UBERON:0002062 name: endocardial cushion alt_id: UBERON:FMA_70302-MA_0000078-ZFA_0001317 def: "The endocardial cushion is a specialized region of mesenchymal cells that will give rise to the heart septa and valves[GO]. Swellings of tissue present between the endocardial and myocardial cell layers that will give rise to the interstitial cells of the cardiac valves[ZFA]." [GO:0003197, Wikipedia:Endocardial_cushion, ZFIN:curator] comment: GO graph seems to suggest this is an endothelium. WP: The endocardial cushions are thought to arise from a subset of endothelial cells that undergo epithelial to mesenchymal transformation, a process whereby these cells break cell-to-cell contacts and migrate into the cardiac jelly (towards to interior of the heart tube). Latest (2010-06-01) new def suggested for GO, added above. Note that EHDAA2 has a more detailed model which we may later adopt subset: uberon_slim subset: vertebrate_core synonym: "atrioventricular cushion" RELATED [Wikipedia:Endocardial_cushion] synonym: "cardiac cushion" EXACT [PMID:15797462] synonym: "endocardial cushion tissue" EXACT [EHDAA2:0000434] synonym: "endocardial cushions" RELATED [] xref: EHDAA:2586 xref: EHDAA2:0000434 xref: EHDAA2:0004028 xref: EMAPA:16696 xref: FMA:70302 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c7/Gray465.png/200px-Gray465.png xref: MA:0000078 xref: OG:0000932 xref: TAO:0001317 xref: XAO:0004189 xref: ZFA:0001317 is_a: UBERON:0003104 {source="GO"} ! mesenchyme is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue is_a: UBERON:0005423 ! developing anatomical structure is_a: UBERON:0009751 ! implied link automatically realized ! cardiac mesenchyme relationship: develops_from UBERON:0002342 {source="Wikipedia"} ! neural crest relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0000948 {source="ZFA"} ! heart relationship: part_of UBERON:0002165 {source="ZFA"} ! endocardium [Term] id: UBERON:0002063 name: sinus venosus alt_id: UBERON:FMA_70303-ZFA_0000154 def: "The sinus venosus is a large quadrangular cavity which precedes the atrium on the venous side of the chordate heart. In humans, it exists distinctly only in the embryonic heart, where it is found between the two venae cavae. In the adult, it is incorporated into the wall of the right atrium to form a smooth part called the sinus venarum, also known as the venarum sinus, which is separated from the rest of the atrium by a ridge of fibres called the crista terminalis. The sinus venosus also forms the SA node and the coronary sinus. In the embryo, the thin walls of the sinus venosus are connected below with the right ventricle, and medially with the left atrium, but are free in the rest of their extent. It receives blood from the vitelline vein, umbilical vein and common cardinal vein. It originally starts as a paired structure but shifts towards associating only with the right atrium as the embryonic heart develops. The left portion shrinks in size and eventually forms the coronary sinus and oblique vein of the left atrium, whereas the right part becomes incorporated into the right atrium to form the sinus venarum." [Wikipedia:Sinus_venosus] comment: In zebrafish, "the sinus venosus also acts as a pacemaker and is the first to contract"[ZFA:0000154] subset: uberon_slim subset: vertebrate_core synonym: "inflow tract" EXACT [ZFA:0000154] synonym: "sinus venarum" RELATED [Wikipedia:Sinus_venosus] synonym: "venarum" RELATED [Wikipedia:Sinus_venosus] synonym: "venarum sinus" RELATED [Wikipedia:Sinus_venosus] synonym: "venosus" RELATED [Wikipedia:Sinus_venosus] xref: AAO:0010505 xref: EHDAA:480 xref: EHDAA2:0001839 xref: EMAPA:16237 xref: FMA:70303 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c7/Gray465.png/200px-Gray465.png xref: ncithesaurus:Sinus_Venosus xref: OG:0000177 xref: TAO:0000154 xref: ZFA:0000154 is_a: UBERON:0004151 ! cardiac chamber relationship: develops_from UBERON:0007278 {source="ZFA"} ! presumptive sinus venosus relationship: part_of UBERON:0000948 ! heart relationship: part_of UBERON:0002350 {source="OG"} ! conducting system of heart [Term] id: UBERON:0002064 name: common cardinal vein alt_id: UBERON:FMA_70308-ZFA_0000186 def: "Either of a pair of large transverse venous sinuses that conduct blood from the cardinal veins to the sinus venosus of the vertebrate embryo." [BTO:0004388, Wikipedia:Common_cardinal_vein] comment: TODO check synonym XAO-related, ZFA-exact subset: uberon_slim subset: vertebrate_core synonym: "duct of Cuvier" RELATED [] xref: AAO:0011033 xref: BTO:0004388 xref: EHDAA:1314 xref: EHDAA2:0000304 xref: EMAPA:16356 xref: FMA:70308 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray477.svg/200px-Gray477.svg.png xref: ncithesaurus:Common_Cardinal_Vein xref: OG:0000112 xref: SCTID:308783008 xref: TAO:0000186 xref: XAO:0000373 xref: ZFA:0000186 is_a: UBERON:0002050 {source="FMA"} ! embryonic structure is_a: UBERON:0003513 ! implied link automatically realized ! trunk blood vessel is_a: UBERON:0004344 ! cardinal vein relationship: part_of UBERON:0002201 ! vasculature of trunk [Term] id: UBERON:0002065 name: postcardinal vein alt_id: UBERON:FMA_70314-ZFA_0000477 def: "Continuation of the caudal vein cranial to the anal pore. The cardinal vein splits into a pair of vessels in the cranial trunk, just caudal to the radix of the aorta. The posterior cardinals each empty into the common cardinal vein. " [ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "axial vein" RELATED [] synonym: "caudal cardinal veins" RELATED [] synonym: "PCV" RELATED [] synonym: "posterior cardinal vein" EXACT [] xref: AAO:0010511 xref: BTO:0004386 xref: EHDAA:1316 xref: EHDAA2:0001486 xref: EMAPA:16357 xref: FMA:70314 xref: ncithesaurus:Posterior_Cardinal_Vein xref: OG:0000111 xref: SCTID:308781005 xref: TAO:0000477 xref: XAO:0000241 xref: ZFA:0000477 is_a: UBERON:0003513 ! implied link automatically realized ! trunk blood vessel is_a: UBERON:0004344 ! cardinal vein relationship: part_of UBERON:0002201 ! vasculature of trunk [Term] id: UBERON:0002066 name: umbilical vein alt_id: UBERON:FMA_70317-MA_0002249 def: "The umbilical vein is a blood vessel present during fetal development that carries oxygenated blood from the placenta to the growing fetus. [WP,unvetted]." [Wikipedia:Umbilical_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: BTO:0001509 xref: EFO:0001940 xref: EHDAA:1034 xref: EHDAA:488 xref: EHDAA2:0002107 xref: EMAPA:16243 xref: EMAPA:16375 xref: EV:0100392 xref: FMA:70317 xref: GAID:542 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/Gray502.png/200px-Gray502.png xref: MA:0002249 xref: MESH:A.07.231.908.670.874 xref: ncithesaurus:Umbilical_Vein xref: OG:0000015 xref: OpenCyc:Mx4rdu17MmWaEd2AAABQjYGu0g xref: SCTID:367567000 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0002067 name: dermis alt_id: UBERON:FMA_70323-MA_0000152-MIAA_0000153-XAO_0000217-ZFA_0001119 def: "The dermis is a layer of skin between the epidermis (with which it makes up the skin) and subcutaneous tissues, and is composed of two layers, the papillary and reticular dermis[WP]." [Wikipedia:Dermis, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "corium" RELATED [BTO:0000294] synonym: "cutis" RELATED [BTO:0000294] synonym: "vertebrate dermis" EXACT [] xref: AAO:0000128 xref: BTO:0000294 xref: EFO:0000953 xref: EV:0100154 xref: FMA:70323 xref: GAID:1321 xref: MA:0000152 xref: MAT:0000153 xref: MESH:A.17.815.180 xref: MIAA:0000153 xref: ncithesaurus:Dermis xref: OG:0000108 xref: SCTID:361696001 xref: TAO:0001119 xref: XAO:0000217 xref: ZFA:0001119 is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004923 ! organ component layer relationship: adjacent_to UBERON:0001003 ! epidermis relationship: adjacent_to UBERON:0002072 ! hypodermis relationship: develops_from UBERON:0003077 {source="ZFA"} ! paraxial mesoderm relationship: develops_from UBERON:0003104 {source="ZFA"} ! mesenchyme relationship: develops_from UBERON:0004016 {source="XAO"} ! dermatome relationship: part_of UBERON:0002097 ! skin of body relationship: part_of UBERON:0002199 ! integument [Term] id: UBERON:0002068 name: urachus alt_id: UBERON:FMA_70343-MA_0001701 def: "The urachus is an embryological canal connecting the urinary bladder of the fetus with the allantois, a structure that contributes to the formation of the umbilical cord. The lumen (inside) of the urachus is normally obliterated during embryonic development, transforming the urachus into a solid cord, a functionless remnant. The urachus lies in the space of Retzius, between the transversalis fascia anteriorly and the peritoneum posteriorly. [WP,unvetted]." [Wikipedia:Urachus] comment: TODO check. Wikipedia and DBPedia disagree - is this a remnant of the allantois? subset: uberon_slim xref: EHDAA:7016 xref: EHDAA:9332 xref: EHDAA2:0002137 xref: EHDAA2:0002138 xref: EMAPA:18323 xref: FMA:70343 xref: GAID:1313 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/63/Gray1156.png/200px-Gray1156.png xref: MA:0001701 xref: MESH:A.16.254.835 xref: ncithesaurus:Urachus xref: OG:0000735 xref: SCTID:276858000 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0001255 ! urinary bladder [Term] id: UBERON:0002069 name: stratum granulosum of epidermis alt_id: UBERON:FMA_70344-MA_0000805 def: "A layer of the epidermis found between the stratum corneum (and possibly stratum lucidum) and stratum spinosum.[1] In this layer, keratinocytes are now called granular cells, and contain keratohyalin and lamellar granules." [Wikipedia:Stratum_granulosum] synonym: "epidermis granular layer" RELATED [] synonym: "epidermis stratum granulosum" EXACT [] synonym: "granular layer of epidermis" EXACT [FMA:70344] synonym: "stratum granulosum" EXACT [BTO:0000361] xref: BTO:0000361 xref: FMA:70344 xref: MA:0000805 xref: ncithesaurus:Stratum_Granulosum xref: SCTID:418563001 is_a: UBERON:0000119 ! cell layer is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: adjacent_to UBERON:0002026 ! stratum spinosum of epidermis relationship: part_of UBERON:0001003 ! epidermis [Term] id: UBERON:0002070 name: superior pancreaticoduodenal artery alt_id: UBERON:FMA_70437-MA_0002015 def: "The superior pancreaticoduodenal artery is an artery that supplies blood to the duodenum and pancreas. It is a branch of the gastroduodenal artery, which comes from the common hepatic artery of the celiac trunk. The common hepatic itself becomes the proper hepatic after giving off the gastroduodenal artery and goes on to supply the right and left lobes of the liver. The term superior distinguishes the superior pancreaticoduodenal artery from the inferior pancreaticoduodenal artery, which a branch of the superior mesenteric artery. These arteries, together with the pancreatic branches of the splenic artery, form connections or anastomoses with one another, allowing blood to perfuse the pancreas and duodenum through multiple channels. The artery splits into two branches: the anterior superior pancreaticoduodenal artery supplies the anterior margins of the duodenum and pancreas the posterior superior pancreaticoduodenal artery supplies the posterior margins of these organs [WP,unvetted]." [Wikipedia:Superior_pancreaticoduodenal_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "bauchspeicheldrüsenzwölffingerdarmpulsader@de" EXACT [http://www.anatomyatlases.org/AnatomicVariants/MuscularSystem/Terminology.shtml] synonym: "superior pancreatico-duodenal artery" EXACT [] synonym: "superior pancreatoduodenal artery" EXACT [http://www.anatomyatlases.org/AnatomicVariants/MuscularSystem/Terminology.shtml] xref: FMA:70437 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Gray533.png/200px-Gray533.png xref: MA:0002015 xref: ncithesaurus:Superior_Pancreatico-Duodenal_Artery xref: SCTID:244272009 is_a: UBERON:0001637 ! artery relationship: supplies UBERON:0002108 ! small intestine [Term] id: UBERON:0002071 name: stratum lucidum of epidermis alt_id: UBERON:FMA_70540-MA_0000806 def: "the layer of lightly staining corneocytes foud between the stratum granulosum and stratum corneum layers; found primarily in the thick epidermis of the palmar and plantar skin and is composed of three to five layers of dead, flattened keratinocytes." [MP:0009610, Wikipedia:Stratum_lucidum] comment: Located between the stratum granulosum and stratum corneum layers, it is composed of three to five layers of dead, flattened keratinocytes. he keratinocytes of the stratum lucidum do not feature distinct boundaries and are filled with eleidin, an intermediate form of keratin. synonym: "epidermis stratum lucidum" EXACT [] synonym: "stratum conjunctum of epidermis" EXACT [] synonym: "stratum lucidum" BROAD [BTO:0000364] xref: BTO:0000364 xref: FMA:70540 xref: MA:0000806 xref: ncithesaurus:Stratum_Lucidum is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: adjacent_to UBERON:0002027 ! stratum corneum of epidermis relationship: adjacent_to UBERON:0002069 ! stratum granulosum of epidermis relationship: part_of UBERON:0001003 ! epidermis [Term] id: UBERON:0002072 name: hypodermis alt_id: UBERON:FMA_70544-MIAA_0000418-ZFA_0000117-ZFA_0001136 def: "Lowermost layer of the integumentary system in vertebrates. Types of cells that are found in the hypodermis are fibroblasts, adipose cells, and macrophages. It is derived from the mesoderm, but unlike the dermis, it is not derived from the dermatome region of the mesoderm. The hypodermis is used mainly for fat storage[WP]. A layer separating the inner face of the dermis from the subjacent muscle cells. It is covered on both sides by a basement membrane. It contains pigment cells[FMA]." [Wikipedia:Hypodermis, ZFIN:curator] comment: Note that this class combines superficial fascia and hypodermis in FMA. Note also BTO has 'subcutis' subset: uberon_slim subset: vertebrate_core synonym: "hypoderm" EXACT [] synonym: "subcutaneous tissue" RELATED [Wikipedia:Hypodermis] synonym: "subcutis" RELATED [] synonym: "superficial fascia" EXACT [FMA:9630] synonym: "tela subcutanea" EXACT [FMA:9630, FMA:TA] synonym: "vertebrate hypodermis" EXACT [] xref: BTO:0004525 xref: FMA:70544 xref: FMA:9630 xref: GAID:929 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6d/Skin.svg/200px-Skin.svg.png xref: MESH:A.10.165.887 xref: ncithesaurus:Superficial_Fascia xref: TAO:0001136 xref: ZFA:0001136 is_a: UBERON:0002384 ! connective tissue is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: adjacent_to UBERON:0002067 ! dermis relationship: develops_from UBERON:0000926 ! mesoderm relationship: part_of UBERON:0002199 {source="ZFA"} ! integument [Term] id: UBERON:0002073 name: hair follicle alt_id: UBERON:FMA_70660-MA_0000154 def: "a tube-like opening in the epidermis where the hair shaft develops and into which the sebaceous glands open[GO]." [Wikipedia:Hair_follicle] comment: TODO - add new class for MA:0002910 vibrissa follicle subset: organ_slim subset: uberon_slim synonym: "vibrissa follicle" RELATED [MP:0010234] xref: BTO:0000554 xref: EFO:0002464 xref: EMAPA:29741 xref: EV:0100156 xref: FMA:70660 xref: GAID:934 xref: MA:0000154 xref: MESH:A.10.272.497.500 xref: ncithesaurus:Hair_Follicle xref: OG:0001268 xref: OpenCyc:Mx4rvVjOI5wpEbGdrcN5Y29ycA xref: SCTID:280830006 is_a: UBERON:0000062 {source="Wikipedia"} ! organ is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: develops_from UBERON:0005086 ! hair follicle placode relationship: overlaps UBERON:0001037 ! strand of hair relationship: part_of UBERON:0001003 ! epidermis [Term] id: UBERON:0002074 name: hair shaft alt_id: UBERON:FMA_70728-MA_0000159 def: "The non-growing portion of a hair which protrudes from the skin, i.e., from the follicle[BTO]. the cuticle, and/or cortex and/or medulla of a hair[MP]." [BTO:0004672, MP:0003809] comment: TODO - add distinct subclasses for coat hair vs vibrissa hair synonym: "scapus pili" RELATED [BTO:0004672] xref: BTO:0004672 xref: FMA:70728 xref: MA:0000159 xref: ncithesaurus:Shaft_of_the_Hair xref: SCTID:361359004 is_a: UBERON:0000021 ! cutaneous appendage is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001037 {source="FMA"} ! strand of hair [Term] id: UBERON:0002075 name: viscus alt_id: UBERON:FMA_7085-XAO_0003034 def: "An organ that is located within the body cavity (or in its extension, in the scrotum); it consists of organ parts that are embryologically derived from endoderm, splanchnic mesoderm or intermediate mesoderm; together with other organs, the viscus constitutes the respiratory, gastrointestinal, urinary, reproductive and immune systems, or is the central organ of the cardiovascular system. Examples: heart, lung, esophagus, kidney, ovary, spleen. // An internal organ of the body; especially: one (as the heart, liver, or intestine) located in the great cavity of the trunk proper." [BTO:0001491, Wikipedia:Viscus] comment: general anatomical term in FMA. Note that we place the MA class here temporarily, although properly systems should be distinguished from organs subset: organ_slim subset: uberon_slim synonym: "viscera" RELATED [] synonym: "visceral organ" EXACT [EHDAA2:0002201] xref: AAO:0010386 xref: BTO:0001491 xref: EHDAA:512 xref: EHDAA2:0002201 xref: EMAPA:16245 xref: FMA:7085 xref: MA:0000019 xref: MESH:A.01.960 xref: ncithesaurus:Viscera xref: SCTID:118760003 xref: XAO:0003034 is_a: UBERON:0005177 ! implied link automatically realized ! trunk organ relationship: part_of UBERON:0002100 relationship: part_of UBERON:0002323 intersection_of: UBERON:0000062 ! organ intersection_of: part_of UBERON:0002100 ! trunk intersection_of: part_of UBERON:0002323 ! body cavity [Term] id: UBERON:0002076 name: cuticle of hair alt_id: UBERON:FMA_70933-MA_0000157 comment: This class was created automatically from a combination of ontologies synonym: "hair cuticle" EXACT [] xref: FMA:70933 xref: MA:0000157 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001037 ! strand of hair [Term] id: UBERON:0002077 name: cortex of hair alt_id: UBERON:FMA_70934-MA_0000156 def: "A cortex that is part of a hair [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "coat hair cortex" EXACT [OBOL:automatic] synonym: "coat/hair cortex" EXACT [OBOL:automatic] synonym: "cortex of coat hair" EXACT [OBOL:automatic] synonym: "cortex of coat/hair" EXACT [OBOL:automatic] synonym: "hair cortex" EXACT [] xref: FMA:70934 xref: MA:0000156 xref: SCTID:318832008 is_a: UBERON:0001851 ! cortex is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001037 intersection_of: UBERON:0001851 ! cortex intersection_of: part_of UBERON:0001037 ! strand of hair relationship: part_of UBERON:0001037 ! strand of hair [Term] id: UBERON:0002078 name: right atrium alt_id: UBERON:FMA_7096-MA_0000075 def: "Right cardiac chamber which is continuous with the superior vena cava and inferior vena cava.[FMA]" [FMA:FMA, Wikipedia:Right_atrium] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "cardiac right atrium" EXACT [] synonym: "heart right atrium" EXACT [] synonym: "right atrium of heart" EXACT [] synonym: "right cardiac atrium" EXACT [] xref: AAO:0010248 xref: BTO:0001703 xref: EHDAA2:0000290 xref: EMAPA:17321 xref: FMA:7096 xref: galen:RightAtrium xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/20/Diagram_of_the_human_heart_%28cropped%29.svg/200px-Diagram_of_the_human_heart_%28cropped%29.svg.png xref: MA:0000075 xref: ncithesaurus:Right_Atrium xref: OG:0000328 xref: OpenCyc:Mx4runNcs6fqEdudWQACs5b6Bw xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rDJ89oqgPEdudWQACs5b6Bw xref: SCTID:244383003 xref: XAO:0003192 is_a: UBERON:0002081 ! implied link automatically realized ! cardiac atrium relationship: in_right_side_of UBERON:0000948 intersection_of: UBERON:0002081 ! cardiac atrium intersection_of: in_right_side_of UBERON:0000948 ! heart [Term] id: UBERON:0002079 name: left atrium alt_id: UBERON:FMA_7097-MA_0000074 def: "Left cardiac chamber which is continuous with the pulmonary venous trunk.[FMA]" [FMA:FMA, Wikipedia:Left_atrium] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "cardiac left atrium" EXACT [] synonym: "heart left atrium" EXACT [] synonym: "left atrium of heart" EXACT [] synonym: "left cardiac atrium" EXACT [] xref: AAO:0010247 xref: BTO:0001702 xref: EHDAA2:0000275 xref: EMAPA:17315 xref: FMA:7097 xref: galen:LeftAtrium xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/20/Diagram_of_the_human_heart_%28cropped%29.svg/200px-Diagram_of_the_human_heart_%28cropped%29.svg.png xref: MA:0000074 xref: ncithesaurus:Left_Atrium xref: OG:0000369 xref: OpenCyc:Mx4rkJN1AagEEdudWQACs5b6Bw xref: OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rDJ89oqgPEdudWQACs5b6Bw xref: SCTID:244387002 xref: XAO:0003191 is_a: UBERON:0002081 ! implied link automatically realized ! cardiac atrium relationship: in_left_side_of UBERON:0000948 intersection_of: UBERON:0002081 ! cardiac atrium intersection_of: in_left_side_of UBERON:0000948 ! heart [Term] id: UBERON:0002080 name: heart right ventricle alt_id: UBERON:FMA_7098-MA_0000093 def: "Right cardiac chamber which is continuous with the pulmonary arterial trunk.[FMA]" [FMA:FMA, Wikipedia:Right_ventricle] subset: uberon_slim synonym: "cardiac right ventricle" EXACT [] synonym: "right ventricle" EXACT [FMA:7098] synonym: "right ventricle of heart" EXACT [] xref: BTO:0001630 xref: EHDAA2:0000196 xref: EMAPA:17340 xref: FMA:7098 xref: galen:RightVentricle xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/20/Diagram_of_the_human_heart_%28cropped%29.svg/200px-Diagram_of_the_human_heart_%28cropped%29.svg.png xref: MA:0000093 xref: ncithesaurus:Right_Ventricle xref: OG:0000717 xref: OpenCyc:Mx4rRMlc0KgNEdudWQACs5b6Bw xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rvVjj1pwpEbGdrcN5Y29ycA xref: SCTID:244384009 is_a: UBERON:0002082 ! implied link automatically realized ! cardiac ventricle relationship: in_right_side_of UBERON:0000948 intersection_of: UBERON:0002082 ! cardiac ventricle intersection_of: in_right_side_of UBERON:0000948 ! heart relationship: develops_from UBERON:0004706 {source="Wikipedia"} ! bulbus cordis relationship: develops_from UBERON:0009889 {source="PMID:17276708"} ! secondary heart field [Term] id: UBERON:0002081 name: cardiac atrium alt_id: UBERON:FMA_7099-MA_0000073 def: "Cardiac chamber which consists of a wall that surrounds the cavity of an atrium.[FMA]" [FMA:FMA, Wikipedia:Heart_atrium] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "atria" EXACT PLURAL [] synonym: "atrial tissue" RELATED [BTO:0000903] synonym: "atrium" EXACT [ZFA:0000471] synonym: "atrium of heart" EXACT [] synonym: "Cardiac atria" EXACT PLURAL [] synonym: "cardiac atria" EXACT PLURAL [] synonym: "heart atrium" EXACT [] xref: AAO:0010246 xref: BTO:0000903 xref: EFO:0000277 xref: EFO:0000314 xref: EHDAA:1265 xref: EMAPA:16688 xref: EV:0100019 xref: FMA:7099 xref: GAID:555 xref: galen:Atrium xref: MA:0000073 xref: MAT:0000496 xref: MESH:A.07.541.358 xref: ncithesaurus:Cardiac_Atrium xref: OG:0000175 xref: SCTID:261405004 xref: TAO:0000471 xref: ZFA:0000471 is_a: UBERON:0004151 ! cardiac chamber relationship: part_of UBERON:0000948 ! heart [Term] id: UBERON:0002082 name: cardiac ventricle alt_id: UBERON:FMA_7100-MA_0000091-ZFA_0000009 def: "Cardiac chamber which consists of a wall that surrounds the cavity of a ventricle." [FMA:7100] subset: uberon_slim subset: vertebrate_core synonym: "heart ventricle" EXACT [] synonym: "lower chamber of heart" EXACT [] synonym: "ventricle" RELATED [] synonym: "ventricle of heart" EXACT [] xref: AAO:0010249 xref: BTO:0000862 xref: EFO:0000317 xref: EHDAA2:0002178 xref: EMAPA:17331 xref: EV:0100020 xref: FMA:7100 xref: GAID:568 xref: MA:0000091 xref: MESH:A.07.541.560 xref: ncithesaurus:Cardiac_Ventricle xref: OG:0000435 xref: OpenCyc:Mx4rvVjj1pwpEbGdrcN5Y29ycA xref: SCTID:277699000 xref: TAO:0000009 xref: XAO:0003193 xref: ZFA:0000009 is_a: UBERON:0002300 ! ventricle is_a: UBERON:0004151 ! cardiac chamber relationship: part_of UBERON:0000948 intersection_of: UBERON:0002300 ! ventricle intersection_of: part_of UBERON:0000948 ! heart relationship: part_of UBERON:0000948 ! heart [Term] id: UBERON:0002083 name: ductus venosus alt_id: UBERON:FMA_71007-MA_0002111 def: "In the fetus, the ductus venosus shunts a significant majority (80%) of the blood flow of the umbilical vein directly to the inferior vena cava. Thus, it allows oxygenated blood from the placenta to bypass the liver. In conjunction with the other fetal shunts, the foramen ovale and ductus arteriosus, it plays a critical role in preferentially shunting oxygenated blood to the fetal brain. The ductus venosus is open at the time of the birth and is the reason why umbilical vein catheterization works. Ductus venosus naturally closes during the first week of life in most full-term neonates; however, it may take much longer to close in pre-term neonates. Functional closure occurs within minutes of birth. Structural closure in term babies occurs within 3 to 7 days. After it closes, the remnant is known as ligamentum venosum[WP]." [Wikipedia:Ductus_venosus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: EHDAA:5402 xref: EHDAA2:0000422 xref: EMAPA:17343 xref: FMA:71007 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/Gray502.png/200px-Gray502.png xref: MA:0002111 xref: ncithesaurus:Ductus_Venosus xref: OG:0000924 xref: SCTID:304829005 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0001009 ! circulatory system [Term] id: UBERON:0002084 name: heart left ventricle alt_id: UBERON:FMA_7101-MA_0000092 def: "Left cardiac chamber which is continuous with the aorta.[FMA]" [FMA:FMA, Wikipedia:Left_ventricle] subset: uberon_slim synonym: "cardiac left ventricle" EXACT [] synonym: "left ventricle" EXACT [FMA:7101] synonym: "left ventricle of heart" EXACT [] xref: BTO:0001629 xref: EMAPA:17337 xref: FMA:7101 xref: galen:LeftVentricle xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/20/Diagram_of_the_human_heart_%28cropped%29.svg/200px-Diagram_of_the_human_heart_%28cropped%29.svg.png xref: MA:0000092 xref: ncithesaurus:Left_Ventricle xref: OG:0000718 xref: OpenCyc:Mx4rtW8v46gEEdudWQACs5b6Bw xref: OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rvVjj1pwpEbGdrcN5Y29ycA xref: SCTID:244385005 is_a: UBERON:0002082 ! implied link automatically realized ! cardiac ventricle relationship: in_left_side_of UBERON:0000948 intersection_of: UBERON:0002082 ! cardiac ventricle intersection_of: in_left_side_of UBERON:0000948 ! heart relationship: continuous_with UBERON:0000947 ! aorta relationship: develops_from UBERON:0004706 {source="Wikipedia"} ! bulbus cordis [Term] id: UBERON:0002085 name: interatrial septum alt_id: UBERON:FMA_7108-MA_0000084 def: "Cardiac septum which separates the right atrium from the left atrium.[FMA]" [FMA:FMA, Wikipedia:Interatrial_septum] subset: uberon_slim synonym: "atrial septum" EXACT [] synonym: "interatrial septal wall" EXACT [] xref: EHDAA:1896 xref: EHDAA2:0000838 xref: EMAPA:17011 xref: FMA:7108 xref: galen:InteratrialSeptum xref: MA:0000084 xref: ncithesaurus:Interatrial_Septum xref: OG:0000385 xref: OpenCyc:Mx4rpd49nLYEEduAAAACs2IKfQ xref: OpenCyc:Mx4rwGvku5wpEbGdrcN5Y29ycA xref: SCTID:362016003 is_a: UBERON:0002099 ! implied link automatically realized ! cardiac septum relationship: adjacent_to UBERON:0002078 relationship: adjacent_to UBERON:0002079 intersection_of: UBERON:0002099 ! cardiac septum intersection_of: adjacent_to UBERON:0002078 ! right atrium intersection_of: adjacent_to UBERON:0002079 ! left atrium [Term] id: UBERON:0002086 name: sinoatrial valve alt_id: UBERON:FMA_71120-ZFA_0000680 comment: This class was created automatically from a combination of ontologies subset: vertebrate_core xref: FMA:71120 xref: TAO:0000680 xref: ZFA:0000680 is_a: UBERON:0000946 ! cardial valve is_a: UBERON:0002050 ! embryonic structure relationship: develops_from UBERON:0002062 {source="PMID:15797462"} ! endocardial cushion relationship: part_of UBERON:0002063 ! sinus venosus relationship: part_of UBERON:0002081 ! cardiac atrium [Term] id: UBERON:0002087 name: atrioventricular canal alt_id: UBERON:FMA_71121-ZFA_0001315 def: "The part of the heart connecting the atrium to the cardiac ventricle[ZFA]. In the developing heart, the constriction between the atrium and ventricle constitutes the atrial canal, and indicates the site of the future atrioventricular valves[WP]." [Wikipedia:Atrioventricular_canal, ZFA:0001315] subset: uberon_slim subset: vertebrate_core synonym: "atrial canal" EXACT [Wikipedia:Atrial_canal] synonym: "AV canal" EXACT [] xref: EHDAA:764 xref: EHDAA2:0000152 xref: EMAPA:16546 xref: FMA:71121 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d8/Gray464.png/200px-Gray464.png xref: OG:0001473 xref: SCTID:341079007 xref: TAO:0001315 xref: XAO:0004123 xref: ZFA:0001315 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: connects UBERON:0002081 ! cardiac atrium relationship: connects UBERON:0002082 ! cardiac ventricle relationship: part_of UBERON:0000948 ! heart [Term] id: UBERON:0002088 name: lateral thoracic vein alt_id: UBERON:FMA_71210-MA_0002162 def: "The lateral thoracic vein is a tributary of the axillary vein. It runs with the lateral thoracic artery and drains the Serratus anterior muscle and the Pectoralis major muscle. Normally, the thoracoepigastric vein exists between this vein and superficial epigastric vein (a tributary of femoral vein), to act as a shunt for blood if the portal system (through the liver) develops hypertension or a blockage. [WP,unvetted]." [Wikipedia:Lateral_thoracic_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:71210 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e9/Gray576.png/200px-Gray576.png xref: MA:0002162 xref: SCTID:53595001 is_a: UBERON:0001638 ! vein relationship: tributary_of UBERON:0000985 {source="FMA/obol"} ! axillary vein relationship: tributary_of UBERON:0001587 {source="FMA/obol"} ! subclavian vein [Term] id: UBERON:0002089 name: thoracodorsal vein alt_id: UBERON:FMA_71213-MA_0002238 comment: This class was created automatically from a combination of ontologies xref: FMA:71213 xref: MA:0002238 is_a: UBERON:0001638 ! vein relationship: tributary_of UBERON:0000985 {source="FMA/obol"} ! axillary vein relationship: tributary_of UBERON:0001587 {source="FMA/obol"} ! subclavian vein [Term] id: UBERON:0002090 name: postcranial axial skeleton alt_id: UBERON:FMA_71221-MA_0000308-MIAA_0000148-XAO_0003073-ZFA_0000317 def: "The post-cranial subdivision of skeleton structural components forming the long axis of the vertebrate body; in Danio, consisting of the notochord, vertebrae, ribs, supraneurals, intermuscular bones, and unpaired median fins; in human consists of the bones of the vertebral column, the thoracic cage and the pelvis[ZFA+FMA]." [https://sourceforge.net/tracker/?func=detail&aid=2983975&group_id=76834&atid=974957, https://sourceforge.net/tracker/?func=detail&atid=1205376&aid=2983977&group_id=76834, ZFA:0000317] comment: previous some AOs had used the term 'axial skeleton' to include the skull. This is being resolved (see tracker items above). Status: MA - fixed. subset: uberon_slim subset: vertebrate_core synonym: "axial skeleton" BROAD [MA:0000308] synonym: "post-cranial axial skeleton" EXACT [] xref: AAO:0000034 xref: EHDAA:5049 xref: EHDAA2:0000161 xref: EMAPA:17214 xref: EMAPA:18043 xref: MA:0002986 xref: MAT:0000148 xref: MIAA:0000148 xref: OG:0000317 xref: TAO:0000317 xref: VAO:0000093 xref: XAO:0003073 xref: ZFA:0000317 is_a: UBERON:0000075 ! subdivision of skeletal system relationship: develops_from UBERON:0003089 ! sclerotome relationship: part_of UBERON:0005944 ! axial skeleton [Term] id: UBERON:0002091 name: appendicular skeleton alt_id: UBERON:FMA_71222-MA_0000290-MIAA_0000278-ZFA_0000027 def: "Subdivision of skeleton which consists of the total set of bones of the upper and lower limbs/appendages[WP,cjm]." [Wikipedia:Appendicular_skeleton] comment: Note that ontologies differ in whether they treat the term appendicular skeleton as being the entire set of bones in the limbs, or whether the fore and hind limbs/fins are treated as seperate appendicular skeletons. Here we follow FMA, and treat the appendicular skeleton as the sum total of skeletal elements in the organism (this is evidenced by the fact that in FMA, skeleton of left/right upper/lower limb is part_of a appendicular skeleton, and subtypes of 'subdivision of appendicular skeleton'). We have separate classes such as 'skeleton of limb', and 'skeleton of hindlimb' for the 4 parts of the appendicular skeleton. In future the ZFA/TAO classes may be moved. Note also the FMA, confusingly, has a class appendicular skeletal system, which includes the upper and lower skeletal system as subtypes subset: uberon_slim subset: vertebrate_core synonym: "paired fin skeleton" NARROW SENSU [] xref: AAO:0000747 xref: EFO:0000951 xref: FMA:71222 xref: MA:0000290 xref: MAT:0000278 xref: MIAA:0000278 xref: ncithesaurus:Appendicular_Skeleton xref: SCTID:322050006 xref: TAO:0000027 xref: VAO:0000076 xref: XAO:0003166 xref: ZFA:0000027 is_a: UBERON:0000075 ! subdivision of skeletal system relationship: overlaps UBERON:0000026 ! appendage [Term] id: UBERON:0002092 name: cranial dura mater alt_id: UBERON:FMA_71236-MA_0000815 def: "the fibrous membrane forming the outer of the three coverings that surrounds the brain within the cranial cavity; consists of two layers including the periosteal layer and the meningeal layer." [MP:0009025] comment: This class was created automatically from a combination of ontologies synonym: "brain dura mater" EXACT [] synonym: "dura mater of brain" EXACT [] xref: EMAPA:17766 xref: EMAPA:17785 xref: EMAPA:17793 xref: EV:0100313 xref: FMA:71236 xref: MA:0000815 xref: ncithesaurus:Cerebral_Dura_Mater xref: OG:0000270 xref: SCTID:309321003 is_a: UBERON:0002363 ! dura mater is_a: UBERON:0003547 ! implied link automatically realized ! brain meninx relationship: part_of UBERON:0000955 intersection_of: UBERON:0002363 ! dura mater intersection_of: part_of UBERON:0000955 ! brain [Term] id: UBERON:0002093 name: spinal dura mater alt_id: UBERON:FMA_71237-MA_0001132 def: "A dura mater that is part of a spinal cord [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies subset: organ_slim synonym: "dura mater of neuraxis of spinal cord" EXACT [OBOL:automatic] synonym: "dura mater of spinal cord" EXACT [] synonym: "spinal cord dura mater" EXACT [] synonym: "spinal cord dura mater of neuraxis" EXACT [OBOL:automatic] xref: EMAPA:17806 xref: FMA:71237 xref: MA:0001132 xref: ncithesaurus:Spinal_Cord_Dura_Mater xref: OG:0000411 xref: SCTID:362302001 is_a: UBERON:0002363 ! dura mater is_a: UBERON:0003292 ! implied link automatically realized ! meninx of spinal cord relationship: part_of UBERON:0002240 intersection_of: UBERON:0002363 ! dura mater intersection_of: part_of UBERON:0002240 ! spinal cord [Term] id: UBERON:0002094 name: interventricular septum alt_id: UBERON:FMA_7133-MA_0000085 def: "Cardiac septum which separates the right ventricle from the left ventricle.[FMA]" [FMA:FMA, Wikipedia:Interventricular_septum] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "heart interventricular septum" EXACT [MA:0000085] synonym: "heart ventricular septum" EXACT [MA:0000085] synonym: "interventricular septum of heart" RELATED [BTO:0002483] synonym: "interventriculare cordis" RELATED [BTO:0002483] synonym: "ventricular septum" RELATED [MA:0000085] xref: BTO:0002483 xref: EFO:0001956 xref: EHDAA:2603 xref: EHDAA2:0000885 xref: EMAPA:17333 xref: FMA:7133 xref: galen:InterventricularSeptum xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/96/Gray498.png/200px-Gray498.png xref: MA:0000085 xref: ncithesaurus:Interventricular_Septum xref: OG:0000386 xref: OpenCyc:Mx4rwA7lp5wpEbGdrcN5Y29ycA xref: SCTID:362019005 is_a: UBERON:0002099 ! implied link automatically realized ! cardiac septum relationship: adjacent_to UBERON:0002080 relationship: adjacent_to UBERON:0002084 intersection_of: UBERON:0002099 ! cardiac septum intersection_of: adjacent_to UBERON:0002080 ! heart right ventricle intersection_of: adjacent_to UBERON:0002084 ! heart left ventricle [Term] id: UBERON:0002095 name: mesentery alt_id: UBERON:FMA_7144-XAO_0000138-ZFA_0005129 def: "Anatomical organ component composed of a double layer of serous membrane that suspends a viscus from the body wall or connects adjacent viscera and in doing so conveys blood vessels, lymphatics and nerves to and from the viscera. Examples: greater omentum, broad ligament of uterus, sigmoid mesocolon." [FMA:7144, Wikipedia:Mesentery, Wikipedia:Mesentery#Mesentery_.28general.29] comment: Note that in Uberon, this term is used in the generic sense, not necessarily restricted to the peritoneum, consistent with FMA. WP: "In anatomy, the mesentery is the double layer of peritoneum that suspends the jejunum and ileum from the posterior wall of the abdomen. Its meaning, however, is frequently extended to include double layers of peritoneum connecting various components of the abdominal cavity.". TODO - check. Consider FMA:259286 - Region of mesentery. subset: uberon_slim subset: vertebrate_core synonym: "generic mesentery" EXACT [Wikipedia:Mesentery] synonym: "mesentery (generic)" EXACT [Wikipedia:Mesentery] xref: AAO:0011061 xref: BTO:0001380 xref: EV:0100083 xref: FMA:7144 xref: GAID:21 xref: galen:Mesentery xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/19/Gray1038.png/200px-Gray1038.png xref: MESH:A.01.047.025.600.451 xref: ncithesaurus:Mesentery xref: SCTID:362707009 is_a: UBERON:0000042 ! serous membrane [Term] id: UBERON:0002097 name: skin of body alt_id: UBERON:FMA_7163-MA_0000151-MIAA_0000284-XAO_0000023 def: "Nonparenchymatous organ that consists of the dermis and epidermis. Subdivisions of the skin surround various body parts; as a whole, the skin constitutes the external layer of the body. Examples: There is only one skin[FMA]. Surface structure that consists of the external membranous integument of the animal." [FMA:7163, OMD:skin, Wikipedia:Skin] comment: Note that FMA uses 'skin' for the entire organ. XAO seems consistent. MA seems to use it analagously to zone of skin subset: major_organ subset: uberon_slim synonym: "entire skin" EXACT [] synonym: "integument" RELATED [] synonym: "skin" RELATED [] xref: BTO:0001253 xref: EFO:0000962 xref: EHDAA2:0001844 xref: EMAPA:17525 xref: FMA:7163 xref: galen:Skin xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6d/Skin.svg/200px-Skin.svg.png xref: MESH:A.17.815 xref: ncithesaurus:Skin xref: OpenCyc:Mx4rvVjX3ZwpEbGdrcN5Y29ycA xref: SCTID:181469002 xref: XAO:0000023 is_a: UBERON:0000062 ! organ relationship: has_part UBERON:0000014 ! zone of skin relationship: has_part UBERON:0001003 ! epidermis relationship: has_part UBERON:0002067 ! dermis relationship: part_of UBERON:0002199 ! integument [Term] id: UBERON:0002098 name: apex of heart alt_id: UBERON:FMA_7164-MA_0000488 def: "The apex of the heart is the lowest superficial part of the heart. It is directed downward, forward, and to the left, and is overlapped by the left lung and pleura. [WP,unvetted]." [Wikipedia:Apex_of_heart] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "cardiac apex" EXACT [] synonym: "heart apex" EXACT [] xref: FMA:7164 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/46/Gray492.png/200px-Gray492.png xref: MA:0000488 xref: ncithesaurus:Apex_of_the_Heart xref: SCTID:362009004 is_a: UBERON:0000015 ! anatomical boundary relationship: part_of UBERON:0000948 ! heart [Term] id: UBERON:0002099 name: cardiac septum alt_id: UBERON:FMA_7180-MA_0000083 def: "The thin membranous structure between the two heart atria or the thick muscular structure between the two heart ventricles." [MESH:A.07.541.459] comment: Note in GO, septum morphogenesis is part of cardiac chamber morphogenesis; need to add axioms to infer this. Taxon notes: "Terrestrial vertebrates have divided hearts in which septae separate the oxygenated and deoxygenated blood within the pulmonary and systemic circulations" subset: uberon_slim synonym: "cardiac septa" EXACT PLURAL [] synonym: "heart septa" EXACT PLURAL [] synonym: "heart septum" EXACT [] synonym: "septum of heart" EXACT [] xref: FMA:7180 xref: GAID:562 xref: MA:0000083 xref: MESH:A.07.541.459 xref: ncithesaurus:Heart_Septum xref: SCTID:362014000 xref: XAO:0004141 is_a: UBERON:0003037 ! septum is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0000948 intersection_of: UBERON:0003037 ! septum intersection_of: part_of UBERON:0000948 ! heart relationship: adjacent_to UBERON:0004151 ! cardiac chamber relationship: part_of UBERON:0000948 ! heart [Term] id: UBERON:0002100 name: trunk alt_id: UBERON:FMA_7181-MIAA_0000296-XAO_0003025-ZFA_0001115 def: "Subdivision of body proper, which consists of a maximal set of diverse subclasses of organ and organ part spatially associated with the ribcage, thoracic and lumbar vertebral column, sacrum and coccyx, it is partially surrounded by skin of trunk.[FMA]. Organism subdivision that is the part of the body posterior to the head and anterior to the tail. // Organism subdivision which is the part of the body posterior to the head and anterior to the tail." [FMA:7181, Wikipedia:Torso, ZFA:0001115, ZFIN:curator] comment: editor note - check AAO subset: uberon_slim subset: vertebrate_core synonym: "Rumpf" RELATED [BTO:0001493] synonym: "torso" EXACT [] synonym: "trunk region" RELATED [AAO:0000612] xref: AAO:0000612 xref: AAO:0010339 xref: BILA:0000116 xref: BTO:0001493 xref: EFO:0000966 xref: FMA:7181 xref: galen:Trunk xref: MA:0000004 xref: MAT:0000296 xref: MIAA:0000296 xref: ncithesaurus:Trunk xref: OpenCyc:Mx4rvVkJjpwpEbGdrcN5Y29ycA xref: SCTID:262225004 xref: TAO:0001115 xref: XAO:0003025 xref: ZFA:0001115 is_a: UBERON:0000475 ! organism subdivision disjoint_from: UBERON:0002464 ! nerve trunk relationship: has_part UBERON:0000915 ! thoracic segment of trunk relationship: has_part UBERON:0000916 ! abdomen relationship: spatially_disjoint_from UBERON:0000026 ! appendage relationship: spatially_disjoint_from UBERON:0000033 ! head [Term] id: UBERON:0002101 name: limb alt_id: UBERON:FMA_7182-MA_0000007-MIAA_0000090-XAO_0003027 subset: uberon_slim synonym: "limb sensu vertebrata" EXACT [MAT:0000090] synonym: "tetrapod limb" EXACT [] xref: AAO:0010336 xref: EFO:0000876 xref: EHDAA:1697 xref: EHDAA:8273 xref: EHDAA2:0003172 xref: EMAPA:16405 xref: FMA:7182 xref: GAID:36 xref: galen:Extremity xref: MA:0000007 xref: MAT:0000090 xref: MIAA:0000090 xref: ncithesaurus:Limb xref: OG:0000336 xref: OpenCyc:Mx4rvn1uSZwpEbGdrcN5Y29ycA xref: SCTID:243996003 xref: XAO:0003027 is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004708 ! limb/fin relationship: develops_from UBERON:0004347 ! limb bud [Term] id: UBERON:0002102 name: forelimb alt_id: UBERON:FMA_7183-MA_0000025-MIAA_0000394-XAO_0003030 def: "anterior-most limb on a body. Note distinction between arm and forelimb. hand is part of forelimb, but not part of arm" [BTO:0001729, ISBN:0471209627, Wikipedia:Forelimb] comment: TODO - check free upper limb vs upper limb in FMA. Both MA and FMA consider shoulder (and shoulder bones) part of upper limb. subset: uberon_slim synonym: "anteriormost limb" EXACT [] synonym: "fore limb" EXACT [] synonym: "foreleg" RELATED [] synonym: "forelimb" EXACT [] synonym: "membrum superius" EXACT [FMA:7183, FMA:TA] synonym: "superior member" EXACT [] synonym: "upper extremity" EXACT [] synonym: "upper limb" EXACT [] xref: AAO:0000205 xref: BTO:0001729 xref: EFO:0000882 xref: EHDAA:6208 xref: EHDAA2:0002133 xref: EMAPA:17412 xref: EV:0100014 xref: FMA:7183 xref: GAID:1215 xref: GAID:51 xref: galen:UpperExtremity xref: MA:0000025 xref: MAT:0000394 xref: MESH:A.13.395 xref: MIAA:0000394 xref: ncithesaurus:Upper_Extremity xref: OG:0000338 xref: SCTID:182245002 xref: XAO:0003030 is_a: UBERON:0002101 ! limb is_a: UBERON:0004710 ! implied link automatically realized ! limb/fin of anterior region of body relationship: anterior_to UBERON:0002103 ! hindlimb relationship: develops_from UBERON:0005417 ! forelimb bud relationship: part_of UBERON:0000153 ! anterior region of body [Term] id: UBERON:0002103 name: hindlimb alt_id: UBERON:FMA_7184-MA_0000026-MIAA_0000395-XAO_0003031 def: "A posterior limb on an animal." [ISBN:0471209627, Wikipedia:Lower_limb] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "hind limb" EXACT [] synonym: "hindlimb" EXACT [] synonym: "inferior member" EXACT [] synonym: "lower extremity" RELATED [] synonym: "lower limb" EXACT [] synonym: "membrum inferius" EXACT [FMA:7184, FMA:TA] xref: AAO:0000219 xref: BTO:0002345 xref: EFO:0000883 xref: EHDAA:6094 xref: EHDAA2:0001033 xref: EMAPA:17458 xref: EV:0100015 xref: FMA:7184 xref: GAID:1221 xref: GAID:38 xref: galen:LowerExtremity xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/dc/Gray1239.png/200px-Gray1239.png xref: MA:0000026 xref: MAT:0000395 xref: MESH:A.13.473 xref: MIAA:0000395 xref: ncithesaurus:Lower_Extremity xref: OG:0000337 xref: SCTID:182281004 xref: XAO:0003031 is_a: UBERON:0002101 ! limb is_a: UBERON:0004709 ! implied link automatically realized ! limb/fin of posterior region of body relationship: develops_from UBERON:0005418 ! hindlimb bud relationship: part_of UBERON:0000154 ! posterior region of body [Term] id: UBERON:0002104 name: visual system alt_id: UBERON:FMA_7191-MA_0002444-ZFA_0001127 def: "." [Wikipedia:Visual_system] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "visual organ system" EXACT [] xref: AAO:0000632 xref: FMA:7191 xref: MA:0002444 xref: ncithesaurus:Visual_System xref: NIF_GrossAnatomy:FMAID_7191 xref: OpenCyc:Mx4rvViCtpwpEbGdrcN5Y29ycA xref: SCTID:281831001 xref: TAO:0001127 xref: XAO:0003198 xref: ZFA:0001127 is_a: UBERON:0001032 ! sensory system relationship: spatially_disjoint_from UBERON:0002105 ! vestibulo-auditory system [Term] id: UBERON:0002105 name: vestibulo-auditory system alt_id: UBERON:FMA_7192-MA_0002443 def: "A sensory system for the sense of hearing[WP]." [Wikipedia:Auditory_system] comment: Auditory system is general anatomical term in FMA subset: functional_classification subset: uberon_slim subset: vertebrate_core synonym: "auditory organ system" EXACT [] synonym: "auditory system" RELATED [] synonym: "auditory/vestibular system" RELATED [] synonym: "vestibuloauditory system" EXACT [] synonym: "vestibuloauditory system" RELATED [] xref: AAO:0000631 xref: FMA:7192 xref: FMA:78500 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7c/HumanEar.jpg/200px-HumanEar.jpg xref: MA:0002443 xref: ncithesaurus:Auditory_System xref: NIF_GrossAnatomy:nlx_anat_090817 xref: OpenCyc:Mx4rvViwtJwpEbGdrcN5Y29ycA xref: TAO:0001138 xref: XAO:0003195 xref: ZFA:0001138 is_a: UBERON:0001032 ! sensory system [Term] id: UBERON:0002106 name: spleen alt_id: UBERON:FMA_7196-MA_0000141-MIAA_0000085-XAO_0000328-ZFA_0000436 def: "Organ found in virtually all vertebrate animals with important roles in regard to red blood cells and the immune system.[1] In humans, it is located in the left upper quadrant of the abdomen. It removes old red blood cells and holds a reserve in case of hemorrhagic shock, especially in animals like horses (not in humans), while recycling iron.[2] It synthesizes antibodies in its white pulp and removes, from blood and lymph node circulation, antibody-coated bacteria along with antibody-coated blood cells." [Wikipedia:Spleen] comment: This class was created automatically from a combination of ontologies subset: organ_slim subset: uberon_slim subset: vertebrate_core xref: AAO:0010395 xref: BTO:0001281 xref: EFO:0000869 xref: EMAPA:18767 xref: EV:0100055 xref: FMA:7196 xref: GAID:1289 xref: galen:Spleen xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d6/Illu_spleen.jpg/200px-Illu_spleen.jpg xref: MA:0000141 xref: MAT:0000085 xref: MESH:A.15.382.520.604.713 xref: MIAA:0000085 xref: ncithesaurus:Spleen xref: OG:0000120 xref: OpenCyc:Mx4rvVjgw5wpEbGdrcN5Y29ycA xref: SCTID:181279003 xref: TAO:0000436 xref: XAO:0000328 xref: ZFA:0000436 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002075 ! viscus is_a: UBERON:0004177 ! implied link automatically realized ! hemopoietic organ is_a: UBERON:0005057 ! implied link automatically realized ! immune organ is_a: UBERON:0005172 ! implied link automatically realized ! abdomen organ relationship: develops_from UBERON:0003104 {source="Wikipedia"} ! mesenchyme relationship: develops_from UBERON:0006293 ! spleen primordium relationship: part_of UBERON:0000916 ! abdomen relationship: part_of UBERON:0001007 ! digestive system relationship: part_of UBERON:0002323 ! body cavity relationship: part_of UBERON:0002390 ! hematopoietic system relationship: part_of UBERON:0002405 ! immune system [Term] id: UBERON:0002107 name: liver alt_id: UBERON:FMA_7197-MA_0000358-MIAA_0000097-XAO_0000133-ZFA_0000123 def: "An exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes[GO]." [BTO:0000759, Wikipedia:Liver] comment: Only ZFA considers this part_of immune system. WP: The liver is found in all vertebrates, and is typically the largest visceral organ. Its form varies considerably in different species, and is largely determined by the shape and arrangement of the surrounding organs. Nonetheless, in most species it is divided into right and left lobes; exceptions to this general rule include snakes, where the shape of the body necessitates a simple cigar-like form. The internal structure of the liver is broadly similar in all vertebrates.[7] An organ sometimes referred to as a liver is found associated with the digestive tract of the primitive chordate Amphioxus. However, this is an enzyme secreting gland, not a metabolic organ, and it is unclear how truly homologous it is to the vertebrate liver. subset: major_organ subset: organ_slim subset: uberon_slim subset: vertebrate_core xref: AAO:0010111 xref: BTO:0000759 xref: EFO:0000887 xref: EHDAA:2197 xref: EHDAA2:0000997 xref: EMAPA:16846 xref: EV:0100089 xref: FMA:7197 xref: GAID:288 xref: galen:Liver xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Leber_Schaf.jpg/200px-Leber_Schaf.jpg xref: MA:0000358 xref: MAT:0000097 xref: MESH:A.03.620 xref: MIAA:0000097 xref: ncithesaurus:Liver xref: OG:0000257 xref: OpenCyc:Mx4rvVimppwpEbGdrcN5Y29ycA xref: SCTID:181268008 xref: TAO:0000123 xref: XAO:0000133 xref: ZFA:0000123 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002365 ! exocrine gland is_a: UBERON:0005057 ! implied link automatically realized ! immune organ is_a: UBERON:0005172 ! implied link automatically realized ! abdomen organ is_a: UBERON:0006925 ! implied link automatically realized ! digestive gland relationship: develops_from UBERON:0004161 {source="EHDAA2"} ! septum transversum relationship: develops_from UBERON:0008836 {source="http://www.stembook.org/node/512"} ! liver bud relationship: part_of UBERON:0000916 {source="FMA"} ! abdomen relationship: part_of UBERON:0000949 {source="EHDAA2"} ! endocrine system relationship: part_of UBERON:0001007 {source="ZFA"} ! digestive system relationship: part_of UBERON:0002405 {source="ZFA"} ! immune system relationship: part_of UBERON:0002423 {source="ZFA"} ! hepatobiliary system [Term] id: UBERON:0002108 name: small intestine alt_id: UBERON:FMA_7200-MA_0000337-MIAA_0000047-XAO_0000130-ZFA_0001323 def: "Organ with organ cavity which is continuous proximally with the stomach and distally with the large intestine[FMA]. The passage from the posterior intestine, from the rectal valve to the opening to the exterior. // The terminal region of the mid intestine is comprised of specialized enterocytes that appear to play a role in mucosal immunity. Wallace et al, 2005." [FMA:7200, WA:dh, Wikipedia:Small_intestine, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: major_organ subset: organ_slim subset: uberon_slim subset: vertebrate_core synonym: "anterior intestine" RELATED [] synonym: "intestinum tenue" RELATED [BTO:0000651] synonym: "mid intestine" RELATED [] synonym: "small bowel" EXACT [] synonym: "small intestine" EXACT [] xref: AAO:0010397 xref: BTO:0000651 xref: EFO:0000841 xref: EV:0100072 xref: FMA:7200 xref: GAID:313 xref: galen:SmallIntestine xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/82/Stomach_colon_rectum_diagram.svg/200px-Stomach_colon_rectum_diagram.svg.png xref: MA:0000337 xref: MAT:0000047 xref: MESH:A.03.492.411.620 xref: MIAA:0000047 xref: ncithesaurus:Small_Intestine xref: OG:0000055 xref: OpenCyc:Mx4rvVjlIJwpEbGdrcN5Y29ycA xref: SCTID:181250005 xref: TAO:0001323 xref: XAO:0000130 xref: ZFA:0001323 is_a: UBERON:0000062 ! organ is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: part_of UBERON:0000160 ! intestine [Term] id: UBERON:0002109 name: pair of nares alt_id: UBERON:FMA_72005-ZFA_0000550 def: "Pair of nostrils." [Wikipedia:Nares] comment: Note this is a "set of anatomical planes" in FMA subset: uberon_slim synonym: "nares" RELATED [] synonym: "nares set" EXACT [] synonym: "nostrils" EXACT [] synonym: "pair of nostrils" EXACT [] xref: FMA:72005 xref: OpenCyc:Mx4rvViCLpwpEbGdrcN5Y29ycA is_a: UBERON:0003102 ! surface structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0000004 ! olfactory apparatus [Term] id: UBERON:0002110 name: gallbladder alt_id: UBERON:FMA_7202-MA_0000356-MIAA_0000072-XAO_0000135-ZFA_0000208 def: "a small organ that aids digestion and stores bile produced by the liver[WP]. Organ with organ cavity which is continuous proximally with the cystic duct and distally terminates in the fundus of the gallbladder[FMA]." [FMA:7202, Wikipedia:Gallbladder] comment: Rats do not have a gallbladder, but produce bile. The bile flows directly from the liver through the (hepatic) bile duct into the small intestine (Hebel and Stromberg, 1988) subset: organ_slim subset: uberon_slim subset: vertebrate_core synonym: "gall bladder" EXACT [] xref: AAO:0010114 xref: BTO:0000493 xref: EFO:0000853 xref: EHDAA:8062 xref: EHDAA2:0000699 xref: EMAPA:17202 xref: EV:0100090 xref: FMA:7202 xref: galen:Gallbladder xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Abdomal_organs.svg/200px-Abdomal_organs.svg.png xref: MA:0000356 xref: MAT:0000072 xref: MESH:A.03.159.439 xref: MIAA:0000072 xref: ncithesaurus:Gallbladder xref: OG:0000221 xref: OpenCyc:Mx4rvVkGr5wpEbGdrcN5Y29ycA xref: SCTID:181269000 xref: TAO:0000208 xref: XAO:0000135 xref: ZFA:0000208 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002075 ! viscus is_a: UBERON:0005172 ! implied link automatically realized ! abdomen organ relationship: develops_from UBERON:0004912 ! biliary bud relationship: part_of UBERON:0000916 ! abdomen relationship: part_of UBERON:0001173 ! biliary tree relationship: part_of UBERON:0002294 ! biliary system relationship: part_of UBERON:0002323 ! body cavity [Term] id: UBERON:0002111 name: smooth muscle of artery alt_id: UBERON:FMA_72024-MA_0000708 def: "A portion of smooth muscle tissue that is part of an artery [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "arterial smooth muscle" EXACT [BTO:0000087] synonym: "arterial smooth muscle cell" RELATED [BTO:0000087] synonym: "artery smooth muscle" EXACT [] xref: BTO:0000087 xref: FMA:72024 xref: MA:0000708 is_a: UBERON:0001135 ! smooth muscle tissue is_a: UBERON:0004237 ! implied link automatically realized ! blood vessel smooth muscle is_a: UBERON:0004695 ! implied link automatically realized ! arterial system smooth muscle relationship: part_of UBERON:0001637 intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0001637 ! artery relationship: part_of UBERON:0001637 ! artery [Term] id: UBERON:0002112 name: smooth muscle of esophagus alt_id: UBERON:FMA_72025-MA_0001573 def: "A portion of smooth muscle tissue that is part of a esophagus [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "esophagus involuntary muscle" EXACT [OBOL:automatic] synonym: "esophagus non-striated muscle" EXACT [OBOL:automatic] synonym: "esophagus smooth muscle" EXACT [] synonym: "esophagus smooth muscle tissue" EXACT [OBOL:automatic] synonym: "gullet involuntary muscle" EXACT [OBOL:automatic] synonym: "gullet non-striated muscle" EXACT [OBOL:automatic] synonym: "gullet smooth muscle" EXACT [OBOL:automatic] synonym: "gullet smooth muscle tissue" EXACT [OBOL:automatic] synonym: "involuntary muscle of esophagus" EXACT [OBOL:automatic] synonym: "involuntary muscle of gullet" EXACT [OBOL:automatic] synonym: "involuntary muscle of oesophagus" EXACT [OBOL:automatic] synonym: "non-striated muscle of esophagus" EXACT [OBOL:automatic] synonym: "non-striated muscle of gullet" EXACT [OBOL:automatic] synonym: "non-striated muscle of oesophagus" EXACT [OBOL:automatic] synonym: "oesophagus involuntary muscle" EXACT [OBOL:automatic] synonym: "oesophagus non-striated muscle" EXACT [OBOL:automatic] synonym: "oesophagus smooth muscle" RELATED [] synonym: "oesophagus smooth muscle tissue" EXACT [OBOL:automatic] synonym: "smooth muscle of gullet" EXACT [OBOL:automatic] synonym: "smooth muscle of oesophagus" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of esophagus" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of gullet" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of oesophagus" EXACT [OBOL:automatic] xref: FMA:72025 xref: MA:0001573 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001135 ! smooth muscle tissue relationship: part_of UBERON:0001043 intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0001043 ! esophagus relationship: part_of UBERON:0003832 ! esophagus muscle [Term] id: UBERON:0002113 name: kidney alt_id: UBERON:FMA_7204-MA_0001683 alt_id: UBERON:FMA_7205-MA_0001655 def: "A paired organ which has the production of urine as its primary function." [Wikipedia:Kidney] subset: major_organ subset: organ_slim subset: uberon_slim subset: vertebrate_core synonym: "kidney" EXACT [] xref: AAO:0000250 xref: BTO:0000671 xref: EFO:0000929 xref: EV:0100096 xref: FMA:7203 xref: GAID:423 xref: galen:Kidney xref: MA:0000368 xref: MAT:0000119 xref: MESH:A.05.810.453 xref: MIAA:0000119 xref: ncithesaurus:Kidney xref: OpenCyc:Mx4rvVjlYpwpEbGdrcN5Y29ycA xref: SCTID:181414000 xref: TAO:0000529 xref: XAO:0003267 is_a: UBERON:0000489 ! cavitated compound organ is_a: UBERON:0005172 ! implied link automatically realized ! abdomen organ is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: develops_from UBERON:0005095 ! kidney rudiment relationship: part_of UBERON:0000916 ! abdomen relationship: part_of UBERON:0001008 ! excretory system relationship: spatially_disjoint_from UBERON:0000160 ! intestine [Term] id: UBERON:0002114 name: duodenum alt_id: UBERON:FMA_7206-MA_0000338-MIAA_0000044-XAO_0000236 def: "The first part of the small intestine. At the junction of the stomach and the duodenum the alimentary canal is inflected. The duodenum first goes anteriorly for a short distance, turns dorsally, and eventually caudally, thus it is a U-shaped structure with two horizontal sections (a ventral and a dorsal one)." [ISBN:0815318960, Wikipedia:Duodenum] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "proximal intestine" RELATED [BTO:0000365] synonym: "upper intestine" RELATED [BTO:0000365] xref: AAO:0010402 xref: BTO:0000365 xref: EFO:0000851 xref: EHDAA:3830 xref: EHDAA:3937 xref: EMAPA:17178 xref: EMAPA:17193 xref: EMAPA:18661 xref: EMAPA:18852 xref: EV:0100073 xref: FMA:7206 xref: GAID:284 xref: galen:Duodenum xref: MA:0000338 xref: MAT:0000044 xref: MESH:A.03.492.411.620.270 xref: MIAA:0000044 xref: ncithesaurus:Duodenum xref: OG:0000052 xref: OpenCyc:Mx4rv4LJDpwpEbGdrcN5Y29ycA xref: SCTID:181247007 xref: XAO:0000236 is_a: UBERON:0004921 ! subdivision of digestive tract relationship: part_of UBERON:0002108 ! small intestine [Term] id: UBERON:0002115 name: jejunum alt_id: UBERON:FMA_7207-MA_0000340-MIAA_0000045 def: "The jejunum is the middle section of the small intestine in most higher vertebrates, including mammals, reptiles, and birds. In fish, the divisions of the small intestine are not as clear and the terms middle intestine or mid-gut may be used instead of jejunum. [WP,unvetted]." [Wikipedia:Jejunum] comment: TODO consider ZFA:0001323 mid intestine, see also small intestine subset: uberon_slim synonym: "intestinum jejunum" RELATED [BTO:0000657] synonym: "middle intestine" RELATED [BTO:0000657] xref: BTO:0000657 xref: EFO:0001333 xref: EMAPA:18666 xref: EMAPA:18932 xref: EV:0100074 xref: FMA:7207 xref: GAID:318 xref: galen:Jejunum xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3d/Illu_small_intestine.jpg/200px-Illu_small_intestine.jpg xref: MA:0000340 xref: MAT:0000045 xref: MESH:A.03.492.411.620.625 xref: MIAA:0000045 xref: ncithesaurus:Jejunum xref: OG:0000053 xref: OpenCyc:Mx4rwATkPJwpEbGdrcN5Y29ycA xref: SCTID:181248002 is_a: UBERON:0004921 ! subdivision of digestive tract relationship: develops_from UBERON:0001045 {source="Wikipedia"} ! midgut relationship: part_of UBERON:0002108 ! small intestine [Term] id: UBERON:0002116 name: ileum alt_id: UBERON:FMA_7208-MA_0000339-MIAA_0000282-XAO_0000237 def: "The ileum is the final section of the small intestine in most higher vertebrates, including mammals, reptiles, and birds. In fish, the divisions of the small intestine are not as clear and the terms posterior intestine or distal intestine may be used instead of ileum. [WP,unvetted]." [Wikipedia:Ileum] comment: TODO consider ZFA:0000706 posterior intestine, see also colon subset: uberon_slim synonym: "distal intestine" RELATED [BTO:0000620] synonym: "intestinum ileum" RELATED [BTO:0000620] synonym: "lower intestine" RELATED [BTO:0000620] xref: AAO:0010403 xref: BTO:0000620 xref: EFO:0001334 xref: EV:0100075 xref: FMA:7208 xref: GAID:315 xref: galen:Ileum xref: MA:0000339 xref: MAT:0000282 xref: MESH:A.03.492.411.620.484 xref: MIAA:0000282 xref: ncithesaurus:Ileum xref: OG:0000647 xref: OpenCyc:Mx4rvdcLHZwpEbGdrcN5Y29ycA xref: SCTID:181249005 xref: XAO:0000237 is_a: UBERON:0004921 ! subdivision of digestive tract relationship: part_of UBERON:0002108 ! small intestine [Term] id: UBERON:0002118 name: right ovary alt_id: UBERON:FMA_7213-MA_0001705 def: "An ovary that is part of a right side of organism [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies xref: FMA:7213 xref: MA:0001705 xref: ncithesaurus:Right_Ovary xref: SCTID:280123002 is_a: UBERON:0000992 ! implied link automatically realized ! female gonad relationship: part_of UBERON:0004532 intersection_of: UBERON:0000992 ! female gonad intersection_of: part_of UBERON:0004532 ! right side of organism [Term] id: UBERON:0002119 name: left ovary alt_id: UBERON:FMA_7214-MA_0001704 def: "An ovary that is part of a left side of organism [Obol]." [OBOL:automatic] comment: In some elasmobranchs, the left ovary does not mature, with only the right ovary fully developing. In the primitive jawless fish, and some teleosts, there is only one ovary, formed by the fusion of the paired organs in the embryo[Wikipedia:Ovary#In_other_animals] xref: FMA:7214 xref: MA:0001704 xref: ncithesaurus:Left_Ovary xref: SCTID:280124008 is_a: UBERON:0000992 ! implied link automatically realized ! female gonad relationship: part_of UBERON:0004531 intersection_of: UBERON:0000992 ! female gonad intersection_of: part_of UBERON:0004531 ! left side of organism [Term] id: UBERON:0002120 name: pronephros alt_id: UBERON:0005794 alt_id: UBERON:FMA_72170-MIAA_0000117-XAO_0002000-ZFA_0000151 def: "In mammals, the pronephros is the first of the three embryonic kidneys to be established and exists only transiently. In lower vertebrates such as fish and amphibia, the pronephros is the fully functional embryonic kidney and is indispensible for larval life[GO]." [GO:0048793, Wikipedia:Pronephros] comment: Once the more complex mesonephros forms the pronephros undergoes apoptosis in amphibians. In fishes the nephron degenerates but the organ remains and becomes a component of the immune system[Wikipedia:Pronephros]. // TODO - check developmental relationships. Note that we previously include the ZFA/XAO terms under the more specific 'pronephric kidney', but these are now merged. TODO GCI: relationship: capable_of GO:0030104 subset: organ_slim subset: uberon_slim synonym: "archinephron" RELATED [BTO:0001541] synonym: "embryonic kidney" RELATED [BTO:0001541] synonym: "pronephric kidney" EXACT [XAO:0002000] synonym: "pronephron" RELATED [BTO:0001541] xref: AAO:0011089 xref: BTO:0001541 xref: EFO:0000927 xref: EHDAA:1017 xref: EHDAA2:0001570 xref: EMAPA:16579 xref: FMA:72170 xref: MAT:0000117 xref: MIAA:0000117 xref: ncithesaurus:Pronephros xref: OG:0000037 xref: SCTID:308804007 xref: TAO:0000151 xref: XAO:0002000 xref: ZFA:0000151 is_a: UBERON:0002113 {source="GO"} ! kidney is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0005423 ! developing anatomical structure relationship: develops_from UBERON:0005095 {source="GO"} ! kidney rudiment relationship: develops_from UBERON:0005721 {source="ZFA"} ! pronephric mesoderm relationship: develops_from UBERON:0005754 ! rostral part of nephrogenic cord relationship: part_of UBERON:0003887 {source="OG"} ! intraembryonic coelom [Term] id: UBERON:0002122 name: capsule of thymus alt_id: UBERON:FMA_72204-MA_0000766 def: "the fibrous connective tissue surrounding the thymus." [MP:0002368] comment: This class was created automatically from a combination of ontologies synonym: "thymic capsule" EXACT [] synonym: "thymus capsule" EXACT [] xref: FMA:72204 xref: MA:0000766 xref: ncithesaurus:Thymic_Capsule xref: SCTID:188181003 is_a: UBERON:0003893 ! capsule relationship: surrounds UBERON:0002370 intersection_of: UBERON:0003893 ! capsule intersection_of: surrounds UBERON:0002370 ! thymus relationship: surrounds UBERON:0002370 ! thymus [Term] id: UBERON:0002123 name: cortex of thymus alt_id: UBERON:FMA_72205-MA_0000767 def: "Cortical portion of thymus, mainly composed of lymphoid cells, supported by a network of finely-branched epithelial reticular cells, which is continuous with a similar network in the medullary portion. This network forms an adventitia to the blood vessels. The cortex is the location of the earliest events in thymocyte development, where T cell receptor gene rearrangement and positive selection takes place." [Wikipedia:Thymus#Cortex] comment: Histologically, the thymus can be divided into a central medulla and a peripheral cortex which is surrounded by an outer capsule. The cortex and medulla play different roles in the development of T cells. Cells in the thymus can be divided into thymic stromal cells and cells of hematopoietic origin[WP] synonym: "thymic cortex" EXACT [BTO:0002934] synonym: "thymus cortex" EXACT [MA:0000767] xref: BTO:0002934 xref: FMA:72205 xref: MA:0000767 xref: ncithesaurus:Thymus_Cortex xref: SCTID:188262003 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0001851 ! implied link automatically realized ! cortex relationship: part_of UBERON:0002370 intersection_of: UBERON:0001851 ! cortex intersection_of: part_of UBERON:0002370 ! thymus [Term] id: UBERON:0002124 name: medulla of thymus alt_id: UBERON:FMA_72206-MA_0000771 def: "Medullary portion of thymus. The reticulum is coarser than in the cortex, the lymphoid cells are relatively fewer in number, and there are found peculiar nest-like bodies, the concentric corpuscles of Hassall. These concentric corpuscles are composed of a central mass, consisting of one or more granular cells, and of a capsule formed of epithelioid cells. They are the remains of the epithelial tubes, which grow out from the third branchial pouches of the embryo to form the thymus. Each follicle is surrounded by a vascular plexus, from which vessels pass into the interior, and radiate from the periphery toward the center, forming a second zone just within the margin of the medullary portion. In the center of the medullary portion there are very few vessels, and they are of minute size." [Wikipedia:Thymus#Medulla] comment: This class was created automatically from a combination of ontologies synonym: "medulla of thymus gland" EXACT [OBOL:automatic] synonym: "thymus gland medulla" EXACT [OBOL:automatic] synonym: "thymus medulla" EXACT [] xref: BTO:0004560 xref: EFO:0001969 xref: FMA:72206 xref: MA:0000771 xref: ncithesaurus:Thymus_Medulla xref: SCTID:188344009 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0000958 ! medulla relationship: part_of UBERON:0002370 intersection_of: UBERON:0000958 ! medulla intersection_of: part_of UBERON:0002370 ! thymus relationship: part_of UBERON:0002370 ! thymus [Term] id: UBERON:0002125 name: lobule of thymus alt_id: UBERON:FMA_72215-MA_0000770 def: "the basic structural unit of the thymus." [MP:0002367] comment: This class was created automatically from a combination of ontologies synonym: "thymic lobule" EXACT [] synonym: "thymus lobule" EXACT [MA:0000770] xref: FMA:72215 xref: MA:0000770 xref: ncithesaurus:Thymic_Lobule xref: SCTID:187882006 is_a: UBERON:0000064 ! organ part is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure relationship: part_of UBERON:0002370 ! thymus [Term] id: UBERON:0002126 name: solitary tract nuclear complex alt_id: UBERON:FMA_72242-MA_0001052 def: "The solitary tract and nucleus are structures in the brainstem that carry and receive visceral sensation and taste from the facial (VII), glossopharyngeal (IX) and vagus (X) cranial nerves. [WP,unvetted]." [Wikipedia:Nucleus_of_tractus_solitarius] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "nuclei of solitary tract" EXACT [] synonym: "nucleus tractus solitarii" EXACT [FMA:72242, FMA:TA] synonym: "solitary nuclei" EXACT [] xref: FMA:72242 xref: SCTID:369080003 is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter is_a: UBERON:0007245 ! nuclear complex of neuraxis relationship: part_of UBERON:0001896 ! medulla oblongata relationship: spatially_disjoint_from UBERON:0002162 {source="ABA"} ! area postrema relationship: spatially_disjoint_from UBERON:0002591 {source="ABA"} ! oral part of spinal trigeminal nucleus relationship: spatially_disjoint_from UBERON:0002610 {source="ABA"} ! cochlear nuclear complex relationship: spatially_disjoint_from UBERON:0002864 {source="ABA"} ! accessory cuneate nucleus relationship: spatially_disjoint_from UBERON:0002866 {source="ABA"} ! caudal part of spinal trigeminal nucleus relationship: spatially_disjoint_from UBERON:0002873 {source="ABA"} ! interpolar part of spinal trigeminal nucleus relationship: spatially_disjoint_from UBERON:0007633 {source="ABA"} ! nucleus of trapezoid body [Term] id: UBERON:0002127 name: inferior olivary complex alt_id: UBERON:FMA_72243-MA_0001040-ZFA_0000215 def: "largest nucleus situated in the olivary body, part of the medulla oblongata. It is closely associated with the cerebellum, but its specific function is voluntary body movements." [Wikipedia:Inferior_olivary_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "caudal olivary nuclei" RELATED [BTO:0002298] synonym: "complexus olivaris inferior" RELATED [BTO:0002298] synonym: "inferior olivary nuclear complex" EXACT [FMA:72243] synonym: "inferior olivary nuclei" RELATED [BTO:0002298] synonym: "inferior olivary nucleus" RELATED [FMA:72243] synonym: "inferior olive" EXACT [FMA:72243] synonym: "nuclei olivares caudales" RELATED [BTO:0002298] synonym: "nuclei olivares inferiores" RELATED [BTO:0002298] synonym: "oliva" EXACT [FMA:72243, FMA:TA] xref: ABA:IO xref: BM:Me-IO xref: BTO:0002298 xref: EV:0100277 xref: FMA:72243 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/72/CerebCircuit.png/200px-CerebCircuit.png xref: MA:0001040 xref: NIF_GrossAnatomy:birnlex_1164 xref: TAO:0000215 xref: ZFA:0000215 is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter is_a: UBERON:0007245 ! nuclear complex of neuraxis relationship: part_of UBERON:0000128 ! olivary body relationship: spatially_disjoint_from UBERON:0001719 {source="ABA"} ! nucleus ambiguus relationship: spatially_disjoint_from UBERON:0002154 {source="ABA"} ! lateral reticular nucleus relationship: spatially_disjoint_from UBERON:0002155 {source="ABA"} ! gigantocellular nucleus relationship: spatially_disjoint_from UBERON:0002559 {source="ABA"} ! medullary reticular formation relationship: spatially_disjoint_from UBERON:0002673 {source="ABA"} ! vestibular nuclear complex relationship: spatially_disjoint_from UBERON:0002870 {source="ABA"} ! dorsal motor nucleus of vagus nerve relationship: spatially_disjoint_from UBERON:0002871 {source="ABA"} ! hypoglossal nucleus relationship: spatially_disjoint_from UBERON:0002872 {source="ABA"} ! inferior salivatory nucleus relationship: spatially_disjoint_from UBERON:0002877 {source="ABA"} ! parasolitary nucleus [Term] id: UBERON:0002128 name: superior olivary complex alt_id: UBERON:FMA_72247-MA_0001026 def: "The superior olivary nucleus is a small cylindrical mass on the dorsal surface of the lateral part of the trapezoid body of the pons, and it is situated immediately above the inferior olivary nucleus. It receives projections from the cochlear nucleus and thus is involved in the perception of sound[GO]." [Wikipedia:Superior_olivary_complex] comment: GO -- In mice, the superior olivary nucleus is a small cylindrical mass on the dorsal surface of the lateral part of the trapezoid body of the pons, and it is situated immediately above the inferior olivary nucleus. It receives projections from the cochlear nucleus and thus is involved in the perception of sound. -- TODO fix GO def to be the same throughout subset: uberon_slim synonym: "nucleus olivaris superior" EXACT [FMA:72247, FMA:TA] synonym: "superior olivary nuclei" EXACT [FMA:72247] synonym: "superior olivary nucleus" RELATED [FMA:72247] synonym: "superior olive" EXACT [FMA:72247] xref: ABA:SOC xref: EV:0100263 xref: FMA:72247 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/46/Gray713.png/200px-Gray713.png xref: NIF_GrossAnatomy:birnlex_1307 is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter is_a: UBERON:0007245 ! nuclear complex of neuraxis relationship: part_of UBERON:0000988 ! pons relationship: spatially_disjoint_from UBERON:0002597 {source="ABA"} ! principal sensory nucleus of trigeminal nerve relationship: spatially_disjoint_from UBERON:0006840 {source="ABA"} ! nucleus of lateral lemniscus relationship: spatially_disjoint_from UBERON:0007634 {source="ABA"} ! parabrachial nucleus [Term] id: UBERON:0002129 name: cerebellar cortex alt_id: UBERON:FMA_72248-MA_0000199 def: "The cerebellar cortex is a thin mantle of gray matter that covers the surface of each cerebral hemisphere. It has a characteristic morphology with convolutions (gyri) and crevices (sulci) that have specific functions. Six layers of nerve cells and the nerve pathways that connect them comprise the cerebellar cortex. Together, these regions are responsible for the processes of conscious thought, perception, emotion and memory as well as advanced motor function[GO]." [Wikipedia:Cerebellar_cortex] comment: The circuits in the cerebellar cortex look similar across all classes of vertebrates, including fish, reptiles, birds, and mammals (e.g., Fig. 2). This has been taken as evidence that the cerebellum performs functions important to all vertebrate species. (Wikipedia) subset: uberon_slim synonym: "cortex cerebellaris" RELATED [BTO:0000043] xref: ABA:CBX xref: BM:CB-Cbx xref: BTO:0000043 xref: EV:0100294 xref: FMA:72248 xref: GAID:596 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a7/Cerebellum_NIH.png/200px-Cerebellum_NIH.png xref: MA:0000199 xref: MESH:A.08.186.211.132.810.428.200.212 xref: ncithesaurus:Cerebellar_Cortex xref: NIF_GrossAnatomy:birnlex_1566 xref: SCTID:361593004 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0002037 ! cerebellum relationship: spatially_disjoint_from UBERON:0002130 {source="ABA"} ! cerebellar nuclear complex [Term] id: UBERON:0002130 name: cerebellar nuclear complex alt_id: UBERON:0004007 alt_id: UBERON:FMA_72249-MA_0000203 def: "the gray matter nuclei located in the center of the cerebellum, embedded in the white matter, which receive inhibitory (GABAergic) inputs from Purkinje cells in the cerebellar cortex and excitatory (glutamatergic) inputs from mossy fiber pathways; all output fibers of the cerebellum originate from the these nuclei[MP]" [MP:0009979, Wikipedia:Deep_cerebellar_nuclei] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "central nuclei" EXACT [] synonym: "cerebellar nuclei" EXACT [] synonym: "deep cerebellar nuclear complex" EXACT [NIF_GrossAnatomy:birnlex_1568] synonym: "deep cerebellar nuclei" EXACT [] synonym: "deep cerebellar nucleus" EXACT [] synonym: "intracerebellar nuclei" EXACT [] synonym: "intrinsic nuclei of cerebellum" EXACT [] synonym: "nuclei cerebelli" EXACT [FMA:72249, FMA:TA] synonym: "roof nuclei-2" EXACT [] xref: ABA:CBN xref: EV:0100299 xref: FMA:72249 xref: GAID:599 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/23/Gray707.png/200px-Gray707.png xref: MA:0000203 xref: MESH:A.08.186.211.132.810.428.200.337 xref: NIF_GrossAnatomy:birnlex_1568 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0002037 ! cerebellum relationship: spatially_disjoint_from UBERON:0002129 {source="ABA"} ! cerebellar cortex [Term] id: UBERON:0002131 name: anterior lobe of cerebellum alt_id: UBERON:FMA_72251-MA_0000991 def: "The anterior lobe of cerebellum is the portion of the cerebellum responsible for mediating unconscious proprioception. In alcoholics, it can deteriorate. It is sometimes equated to the 'paleocerebellum'. [WP,unvetted]." [Wikipedia:Anterior_lobe_of_cerebellum] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "anterior cerebellar lobe" EXACT [] synonym: "anterior lobe of cerebellum" EXACT [] synonym: "anterior lobe of the cerebellum" EXACT [NIF_GrossAnatomy:birnlex_1118] synonym: "cerebellum anterior lobe" EXACT [] xref: EV:0100295 xref: FMA:72251 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/13/CerebellumRegions.jpg/200px-CerebellumRegions.jpg xref: MA:0000991 xref: NIF_GrossAnatomy:birnlex_1118 xref: SCTID:279359004 is_a: UBERON:0005293 ! cerebellum lobe [Term] id: UBERON:0002132 name: dentate nucleus alt_id: UBERON:FMA_72260-MA_0001008 def: "The Dentate nucleus is located within the deep white matter of each cerebellar hemisphere. It is the largest of the four deep cerebellar nuclei, the others being the fastigial nucleus and the interposed nucleus (globose and emboliform nuclei combined). It is responsible for the planning, initiation and control of volitional movements. It therefore receives its afferents from the premotor cortex and the supplementary motor cortex. Its efferents project via the superior cerebellar peduncle through the red nucleus to the ventrolateral thalamus (crossing over at the pontomesencephalic junction). It consists of an irregularly folded, of a grayish-yellow color, containing white fibers, and presenting on its antero-medial aspect an opening, the hilus, from which most of the fibers of the superior peduncle emerge. [WP,unvetted]." [Wikipedia:Dentate_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "dentate cerebellar nucleus" EXACT [NIF_GrossAnatomy:birnlex_1171] synonym: "lateral cerebellar nucleus" EXACT [] synonym: "lateral nucleus of cerebellum" EXACT [] xref: ABA:DN xref: BM:CB-CBL xref: EV:0100300 xref: FMA:72260 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/23/Gray707.png/200px-Gray707.png xref: MA:0001008 xref: NIF_GrossAnatomy:birnlex_1171 is_a: UBERON:0002130 ! cerebellar nuclear complex is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002946 ! implied link automatically realized ! regional part of cerebellum is_a: UBERON:0009662 ! implied link automatically realized ! hindbrain nucleus relationship: part_of UBERON:0002130 ! cerebellar nuclear complex relationship: spatially_disjoint_from UBERON:0002153 {source="ABA"} ! fastigial nucleus [Term] id: UBERON:0002133 name: atrioventricular valve alt_id: UBERON:FMA_7233-ZFA_0005064 def: "Cardiac valve which has as its parts the leaf of cardiac valve that separates the atrium from the ventricle. // The atrioventricular valve has four distinct leaflets oriented anterior, posterior, left, and right of the atrioventricular orifice. Hu et al. 2001." [Wikipedia:Heart_valve#Atrioventricular_valves, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: vertebrate_core synonym: "AV valve" EXACT [] xref: EHDAA:7421 xref: EHDAA2:0000153 xref: FMA:7233 xref: galen:AtrioventricularValve xref: MA:0002789 xref: OG:0001472 xref: OpenCyc:Mx4rfCfdorrpEduAAAACs6hRXg xref: SCTID:11124005 xref: TAO:0005064 xref: ZFA:0005064 is_a: UBERON:0000946 ! cardial valve relationship: connects UBERON:0002081 ! cardiac atrium relationship: connects UBERON:0002082 ! cardiac ventricle relationship: develops_from UBERON:0002062 {source="PMID:15797462"} ! endocardial cushion [Term] id: UBERON:0002134 name: tricuspid valve alt_id: UBERON:FMA_7234-MA_0000090 def: "Atrioventricular valve which has as its parts the anterior, posterior and septal leaflets, attached to the fibrous ring of tricuspid valve.[FMA]" [FMA:FMA, Wikipedia:Tricuspid_valve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "right atrioventricular valve" EXACT [] synonym: "valva atrioventricularis dextra" EXACT [FMA:7234, FMA:TA] xref: EHDAA:7427 xref: EHDAA2:0002081 xref: EHDAA2:0004029 xref: EMAPA:17873 xref: FMA:7234 xref: GAID:567 xref: galen:TricuspidValve xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/20/Diagram_of_the_human_heart_%28cropped%29.svg/200px-Diagram_of_the_human_heart_%28cropped%29.svg.png xref: MA:0000090 xref: MESH:A.07.541.510.893 xref: ncithesaurus:Tricuspid_Valve xref: OG:0000816 xref: OpenCyc:Mx4rvuWAAJwpEbGdrcN5Y29ycA xref: SCTID:181288007 is_a: UBERON:0002133 ! atrioventricular valve is_a: UBERON:0005208 ! implied link automatically realized ! right atrium valve relationship: part_of UBERON:0005965 ! outflow part of right atrium [Term] id: UBERON:0002135 name: mitral valve alt_id: UBERON:FMA_7235-MA_0000088 def: "Atrioventricular valve which has as its parts the anterior and posterior leaflets, attached to the fibrous ring of mitral valve.[FMA]" [FMA:FMA, Wikipedia:Mitral_valve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "bicuspid valve" RELATED [] synonym: "left atrioventricular valve" EXACT [] synonym: "valva atrioventricularis sinistra" EXACT [FMA:7235, FMA:TA] xref: EFO:0003933 xref: EHDAA2:0000168 xref: EMAPA:17871 xref: FMA:7235 xref: GAID:565 xref: galen:MitralValve xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/20/Diagram_of_the_human_heart_%28cropped%29.svg/200px-Diagram_of_the_human_heart_%28cropped%29.svg.png xref: MA:0000088 xref: MESH:A.07.541.510.507 xref: ncithesaurus:Mitral_Valve xref: OG:0000817 xref: OpenCyc:Mx4rv4l2nJwpEbGdrcN5Y29ycA xref: SCTID:181286006 is_a: UBERON:0002133 ! atrioventricular valve [Term] id: UBERON:0002136 name: hilus of dentate gyrus alt_id: UBERON:FMA_72358-MA_0000947 comment: Merge with CA4? synonym: "CA4" RELATED [] synonym: "dentate gyrus hilus" EXACT [] synonym: "field CA4 of hippocampal formation" EXACT [] xref: FMA:72358 xref: MA:0000947 xref: NIF_GrossAnatomy:birnlex_1482 is_a: UBERON:0002744 ! hilum of dentate nucleus is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter relationship: part_of UBERON:0001885 ! dentate gyrus of hippocampal formation [Term] id: UBERON:0002137 name: aortic valve alt_id: UBERON:FMA_7236-MA_0000087 def: "Cardiac valve which has as its parts the anterior, right posterior and left posterior cusps, attached to the fibrous ring of aortic valve.[FMA]" [FMA:FMA, Wikipedia:Aortic_valve] comment: Human variation: It is normally tricuspid (with three leaflets), although in 1% of the population it is found to be congenitally bicuspid (two leaflets) subset: uberon_slim xref: BTO:0004628 xref: EFO:0003879 xref: EHDAA:4410 xref: EHDAA2:0000134 xref: EMAPA:17870 xref: FMA:7236 xref: GAID:563 xref: galen:AorticValve xref: MA:0000087 xref: MESH:A.07.541.510.110 xref: ncithesaurus:Aortic_Valve xref: OG:0000815 xref: OpenCyc:Mx4rv5914JwpEbGdrcN5Y29ycA xref: SCTID:181287002 is_a: UBERON:0005623 {source="MA"} ! semi-lunar valve relationship: part_of UBERON:0005956 ! outflow part of left ventricle [Term] id: UBERON:0002138 name: habenulo-interpeduncular tract alt_id: UBERON:FMA_72400-ZFA_0000353 comment: This class was created automatically from a combination of ontologies subset: vertebrate_core synonym: "fasciculus retroflexus" EXACT [] synonym: "fasciculus retroflexus (meynert)" EXACT [NIF_GrossAnatomy:birnlex_1504] synonym: "habenulointerpeduncular fasciculus" EXACT [] synonym: "habenulointerpeduncular tract" RELATED [] synonym: "habenulopeduncular tract" EXACT [] synonym: "Meynert's retroflex bundle" EXACT [] synonym: "tractus habenulo-interpeduncularis" EXACT [ZFA:0000353] xref: BM:HPT xref: FMA:72400 xref: NIF_GrossAnatomy:birnlex_1504 xref: SCTID:369194000 xref: TAO:0000353 xref: ZFA:0000353 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0002139 name: subcommissural organ alt_id: UBERON:FMA_72414-ZFA_0000683 def: "The subcommissural organ is a circumventricular organ consisting of ependymal cells which secrete somatostatin. It is named for its location relative to the posterior commissure. [WP,unvetted]." [Wikipedia:Subcommissural_organ] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "SCO" RELATED [] xref: BTO:0001820 xref: FMA:72414 xref: GAID:794 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d7/Gray715.png/200px-Gray715.png xref: MA:0002941 xref: MESH:A.08.713.810 xref: NIF_GrossAnatomy:birnlex_1028 xref: SCTID:369193006 xref: TAO:0000683 xref: ZFA:0000683 is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0002140 name: parabigeminal nucleus alt_id: UBERON:FMA_72415-MA_0001074 comment: This class was created automatically from a combination of ontologies xref: ABA:PBG xref: BM:PBG xref: FMA:72415 xref: MA:0001074 xref: NIF_GrossAnatomy:birnlex_1007 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0007414 ! implied link automatically realized ! nucleus of midbrain tegmentum relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0002141 name: parvocellular oculomotor nucleus alt_id: UBERON:FMA_72424-MA_0001071 def: "The Edinger-Westphal nucleus (also known as the accessory oculomotor nucleus) is the accessory parasympathetic cranial nerve nucleus of the oculomotor nerve, supplying the constricting muscles of the iris. Alternatively, the Edinger-Westphal nucleus is a term often used to refer to the adjacent population of non-preganglionic neurons that do not project to the ciliary ganglion, but rather project to the spinal cord, dorsal raphe nucleus, and septal nuclei. Unlike the classical, preganglionic Edinger-Westphal neurons that contain choline acetyltransferase, neurons of the non-preganglionic Edinger-Westphal nucleus have been shown to contain various stress- and feeding-related neuropeptides, such as Urocortin and cocaine- and amphetamine-regulated transcript. Proper nomenclature for this distinct brain region has not yet been established. [WP,unvetted]." [Wikipedia:Edinger-westphal_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "accessory oculomotor nucleus" EXACT [] synonym: "edinger-westphal nucleus" EXACT [] synonym: "nucleus Edinger-Westphal" EXACT [ZFA:0000244] synonym: "oculomotor nucleus, parvocellular part" EXACT [] xref: ABA:EW xref: BM:EW xref: FMA:72424 xref: MA:0001071 xref: NIF_GrossAnatomy:birnlex_822 xref: SCTID:62088007 xref: ZFA:0000244 is_a: UBERON:0000126 ! cranial nerve nucleus is_a: UBERON:0007414 ! implied link automatically realized ! nucleus of midbrain tegmentum relationship: part_of UBERON:0001943 ! midbrain tegmentum relationship: spatially_disjoint_from UBERON:0001715 {source="ABA"} ! oculomotor nuclear complex relationship: spatially_disjoint_from UBERON:0001944 {source="ABA"} ! pretectal region relationship: spatially_disjoint_from UBERON:0001947 {source="ABA"} ! red nucleus relationship: spatially_disjoint_from UBERON:0001966 {source="ABA"} ! substantia nigra pars reticulata relationship: spatially_disjoint_from UBERON:0002438 {source="ABA"} ! ventral tegmental nucleus relationship: spatially_disjoint_from UBERON:0002691 {source="ABA"} ! ventral tegmental area relationship: spatially_disjoint_from UBERON:0002696 {source="ABA"} ! cuneiform nucleus relationship: spatially_disjoint_from UBERON:0002722 {source="ABA"} ! trochlear nucleus relationship: spatially_disjoint_from UBERON:0002995 {source="ABA"} ! substantia nigra pars lateralis relationship: spatially_disjoint_from UBERON:0003040 {source="ABA"} ! central gray substance of midbrain [Term] id: UBERON:0002142 name: pedunculopontine tegmental nucleus alt_id: UBERON:FMA_72429-MA_0001020 def: "The pedunculopontine nucleus (PPN) (or pedunculopontine tegmental nucleus, PPTN) is located in the brainstem, caudal to the substantia nigra and adjacent to the superior cerebellar peduncle. It is composed by a wide variety of neurochemical cell types, including cholinergic, glutamatergic and GABAergic cells. In the classical sense, the PPN is considered to be one of the main components of the reticular activating system. [WP,unvetted]." [Wikipedia:Pedunculopontine_tegmental_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "peduncular pontine nucleus" EXACT [] synonym: "pedunculopontine nucleus" EXACT [] xref: ABA:PPN xref: BM:Pons-PPT xref: FMA:72429 xref: MA:0001020 xref: NIF_GrossAnatomy:birnlex_1437 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0006331 ! implied link automatically realized ! brainstem nucleus is_a: UBERON:0009662 ! implied link automatically realized ! hindbrain nucleus relationship: part_of UBERON:0000988 ! pons relationship: part_of UBERON:0002275 ! reticular formation relationship: spatially_disjoint_from UBERON:0001965 {source="ABA"} ! substantia nigra pars compacta relationship: spatially_disjoint_from UBERON:0007412 {source="ABA"} ! midbrain raphe nuclei [Term] id: UBERON:0002143 name: dorsal tegmental nucleus alt_id: UBERON:FMA_72434-ZFA_0000346 comment: This class was created automatically from a combination of ontologies subset: vertebrate_core synonym: "dorsal tegmental nucleus (gudden)" EXACT [] synonym: "dorsal tegmental nucleus of gudden" EXACT [NIF_GrossAnatomy:birnlex_992] synonym: "gudden nucleus" EXACT [] synonym: "nucleus tegmentalis dorsalis" EXACT [ZFA:0000346] synonym: "nucleus tegmentalis posterior" EXACT [FMA:72434, FMA:TA] synonym: "posterior tegmental nucleus" EXACT [] synonym: "von Gudden's nucleus" EXACT [] xref: ABA:DTN xref: BM:TD xref: FMA:72434 xref: MA:0001013 xref: NIF_GrossAnatomy:birnlex_992 xref: OG:0001368 xref: TAO:0000346 xref: ZFA:0000346 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0007414 ! implied link automatically realized ! nucleus of midbrain tegmentum relationship: part_of UBERON:0001943 ! midbrain tegmentum relationship: spatially_disjoint_from UBERON:0002147 {source="ABA"} ! reticulotegmental nucleus relationship: spatially_disjoint_from UBERON:0002149 {source="ABA"} ! superior salivatory nucleus relationship: spatially_disjoint_from UBERON:0002151 {source="ABA"} ! pontine nuclear group relationship: spatially_disjoint_from UBERON:0002633 {source="ABA"} ! motor nucleus of trigeminal nerve relationship: spatially_disjoint_from UBERON:0002682 {source="ABA"} ! abducens nucleus relationship: spatially_disjoint_from UBERON:0002963 {source="ABA"} ! caudal pontine reticular nucleus relationship: spatially_disjoint_from UBERON:0002968 {source="ABA"} ! central gray substance of pons relationship: spatially_disjoint_from UBERON:0003011 {source="ABA"} ! facial motor nucleus relationship: spatially_disjoint_from UBERON:0007632 {source="ABA"} ! barrington's nucleus [Term] id: UBERON:0002144 name: peripeduncular nucleus alt_id: UBERON:FMA_72437-MA_0000875 def: "a group of neuron cell bodies that form a thin, caplike configuration over the dorsolateral aspect of the crus cerebri; many of its cells are acetylcholinesterase positive." [http://www.medilexicon.com/medicaldictionary.php?t=61630] comment: Note that FMA and NIF support this being part of midbrain tegmentum; MA places this in the thalamus and ABA supports thalamus. todo - check. for now we take a conservative position and assert overlaps for both rather than part of synonym: "peripeduncular nucleus of pons" EXACT [FMA:72437] xref: ABA:PP xref: BM:MB-PPN xref: FMA:72437 xref: MA:0000875 xref: NIF_GrossAnatomy:birnlex_1474 xref: SCTID:25949000 is_a: UBERON:0002308 ! nucleus of brain relationship: overlaps UBERON:0001900 {source="MA"} ! subthalamus relationship: overlaps UBERON:0001943 {source="NIF"} ! midbrain tegmentum relationship: spatially_disjoint_from UBERON:0002704 {source="ABA"} ! metathalamus relationship: spatially_disjoint_from UBERON:0002776 {source="ABA"} ! ventral nuclear group [Term] id: UBERON:0002145 name: interpeduncular nucleus alt_id: UBERON:FMA_72439-MA_0001069 comment: This class was created automatically from a combination of ontologies subset: vertebrate_core synonym: "interpeduncular ganglion" EXACT [] xref: ABA:IPN xref: BM:MB-IP xref: FMA:72439 xref: MA:0001069 xref: NIF_GrossAnatomy:birnlex_1000 xref: ZFA:0000903 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0007414 ! implied link automatically realized ! nucleus of midbrain tegmentum relationship: part_of UBERON:0001943 {source="NIF"} ! midbrain tegmentum relationship: spatially_disjoint_from UBERON:0002043 {source="ABA"} ! dorsal raphe nucleus [Term] id: UBERON:0002146 name: pulmonary valve alt_id: UBERON:FMA_7246-MA_0000089 def: "Cardiac valve which has as its parts the right anterior, left anterior and posterior cusps, attached to the fibrous ring of pulmonary valve.[FMA]" [FMA:FMA, Wikipedia:Pulmonary_valve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "pulmonic valve" EXACT [] xref: EHDAA:4412 xref: EHDAA2:0001577 xref: EMAPA:17872 xref: FMA:7246 xref: GAID:566 xref: galen:PulmonaryValve xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/20/Diagram_of_the_human_heart_%28cropped%29.svg/200px-Diagram_of_the_human_heart_%28cropped%29.svg.png xref: MA:0000089 xref: MESH:A.07.541.510.738 xref: ncithesaurus:Pulmonary_Valve xref: OG:0000814 xref: OpenCyc:Mx4rwP6uq5wpEbGdrcN5Y29ycA xref: SCTID:181289004 is_a: UBERON:0005623 {source="MA"} ! semi-lunar valve [Term] id: UBERON:0002147 name: reticulotegmental nucleus alt_id: UBERON:FMA_72471-MA_0001025 comment: This class was created automatically from a combination of ontologies synonym: "nucleus reticularis tegmenti pontis" EXACT [FMA:72471, FMA:TA] synonym: "reticular tegmental nucleus" EXACT [] synonym: "reticulotegmental nucleus of pons" EXACT [] synonym: "tegmental reticular nucleus, pontine gray" EXACT [] xref: ABA:TRN xref: FMA:72471 xref: MA:0001025 xref: NIF_GrossAnatomy:birnlex_882 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0006331 ! implied link automatically realized ! brainstem nucleus is_a: UBERON:0009662 ! implied link automatically realized ! hindbrain nucleus relationship: part_of UBERON:0000988 ! pons relationship: part_of UBERON:0002275 ! reticular formation relationship: spatially_disjoint_from UBERON:0002143 {source="ABA"} ! dorsal tegmental nucleus relationship: spatially_disjoint_from UBERON:0002149 {source="ABA"} ! superior salivatory nucleus relationship: spatially_disjoint_from UBERON:0002151 {source="ABA"} ! pontine nuclear group relationship: spatially_disjoint_from UBERON:0002633 {source="ABA"} ! motor nucleus of trigeminal nerve relationship: spatially_disjoint_from UBERON:0002682 {source="ABA"} ! abducens nucleus relationship: spatially_disjoint_from UBERON:0002963 {source="ABA"} ! caudal pontine reticular nucleus relationship: spatially_disjoint_from UBERON:0002968 {source="ABA"} ! central gray substance of pons relationship: spatially_disjoint_from UBERON:0003011 {source="ABA"} ! facial motor nucleus relationship: spatially_disjoint_from UBERON:0007632 {source="ABA"} ! barrington's nucleus [Term] id: UBERON:0002148 name: locus ceruleus alt_id: UBERON:FMA_72478-MA_0001017-ZFA_0000539 def: "The locus ceruleus is a dense cluster of neurons within the dorsorostral pons. This nucleus is the major location of neurons that release norepinephrine throughout the brain, and is responsible for physiological responses to stress and panic[GO]. Bluish region in the superior angle of the fourth ventricle floor, corresponding to melanin-like pigmented nerve cells which lie lateral to the ponto-mesencephalic central gray (griseum centrale). It is also known as nucleus pigmentosus pontis[GAID]." [GAID:577, GO:0021703, Wikipedia:Locus_ceruleus] comment: TODO - check ZFA/pons. also GO says part of dorsorostral pons subset: uberon_slim subset: vertebrate_core synonym: "blue nucleus" EXACT [NIF_GrossAnatomy:birnlex_905] synonym: "caerulean nucleus" EXACT [] synonym: "locus caeruleus" EXACT [NIF_GrossAnatomy:birnlex_905] synonym: "locus cinereus" RELATED [BTO:0001408] synonym: "locus coeruleu" EXACT [] synonym: "locus coeruleus" EXACT [] synonym: "nucleus caeruleus" EXACT [FMA:72478, FMA:TA] synonym: "nucleus of locus caeruleus" EXACT [] synonym: "nucleus pigmentosus pontis" EXACT [NIF_GrossAnatomy:birnlex_905] synonym: "substantia ferruginea" EXACT [NIF_GrossAnatomy:birnlex_905] xref: ABA:LC xref: BM:Pons-LC xref: BTO:0001408 xref: EFO:0001963 xref: FMA:72478 xref: GAID:577 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/77/Gray709.png/200px-Gray709.png xref: MA:0001017 xref: MESH:A.08.186.211.132.659.473 xref: NIF_GrossAnatomy:birnlex_905 xref: SCTID:369016004 xref: TAO:0000539 xref: ZFA:0000539 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0006331 ! implied link automatically realized ! brainstem nucleus is_a: UBERON:0009662 ! implied link automatically realized ! hindbrain nucleus relationship: part_of UBERON:0000988 ! pons relationship: spatially_disjoint_from UBERON:0002047 {source="ABA"} ! pontine raphe nucleus relationship: spatially_disjoint_from UBERON:0002267 {source="ABA"} ! laterodorsal tegmental nucleus relationship: spatially_disjoint_from UBERON:0002587 {source="ABA"} ! nucleus subceruleus relationship: spatially_disjoint_from UBERON:0003004 {source="ABA"} ! median raphe nucleus [Term] id: UBERON:0002149 name: superior salivatory nucleus alt_id: UBERON:FMA_72482-MA_0001027 def: "visceromotor cranial nerve nucleus located in the pontine tegmentum." [Wikipedia:Superior_salivatory_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "superior salivary nucleus" EXACT [GO:0021753] xref: ABA:SSN xref: FMA:72482 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6b/Gray788.png/200px-Gray788.png xref: MA:0001027 xref: NIF_GrossAnatomy:birnlex_1131 xref: SCTID:369028007 is_a: UBERON:0000126 ! cranial nerve nucleus is_a: UBERON:0004133 ! salivatory nucleus relationship: part_of UBERON:0003023 ! pontine tegmentum relationship: spatially_disjoint_from UBERON:0002143 {source="ABA"} ! dorsal tegmental nucleus relationship: spatially_disjoint_from UBERON:0002147 {source="ABA"} ! reticulotegmental nucleus relationship: spatially_disjoint_from UBERON:0002151 {source="ABA"} ! pontine nuclear group relationship: spatially_disjoint_from UBERON:0002633 {source="ABA"} ! motor nucleus of trigeminal nerve relationship: spatially_disjoint_from UBERON:0002682 {source="ABA"} ! abducens nucleus relationship: spatially_disjoint_from UBERON:0002963 {source="ABA"} ! caudal pontine reticular nucleus relationship: spatially_disjoint_from UBERON:0002968 {source="ABA"} ! central gray substance of pons relationship: spatially_disjoint_from UBERON:0003011 {source="ABA"} ! facial motor nucleus relationship: spatially_disjoint_from UBERON:0007632 {source="ABA"} ! barrington's nucleus [Term] id: UBERON:0002150 name: superior cerebellar peduncle alt_id: UBERON:FMA_72495-MA_0002746 def: "The superior cerebellar peduncles (brachium conjunctivum), two in number, emerge from the upper and medial part of the white substance of the hemispheres and are placed under cover of the upper part of the cerebellum. They are joined to each other across the middle line by the anterior medullary velum, and can be followed upward as far as the inferior colliculi, under which they disappear. Below, they form the upper lateral boundaries of the fourth ventricle, but as they ascend they converge on the dorsal aspect of the ventricle and thus assist in roofing it in. All fibers (except vestibular fibers to the vestibular nuclei through the inferior cerebellar peduncle) carrying information from the cerebellum to the midbrain and pons pass through the superior cerebellar peduncle. [WP,unvetted]." [Wikipedia:Superior_cerebellar_peduncle] comment: we follow NIF in dividing this into 3 parts. This allows for consistency with ABA subset: uberon_slim synonym: "brachium conjunctivum" EXACT [NIF_GrossAnatomy:birnlex_1711] synonym: "superior peduncle" RELATED [Wikipedia:Superior_cerebellar_peduncle] xref: BM:BC xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/97/Gray704.png/200px-Gray704.png xref: MA:0002746 xref: NIF_GrossAnatomy:birnlex_1711 xref: SCTID:279218008 is_a: UBERON:0007416 ! cerebellar peduncle [Term] id: UBERON:0002151 name: pontine nuclear group alt_id: UBERON:FMA_72512-MA_0001021 def: "The pontine nuclei are a part of the pons which store the memory of intention during motor activity. Corticopontine fibres carry information from the primary motor cortex to the ipsilateral pontine nucleus in the ventral pons, and the pontocerebellar projection then carries that information to the contralateral cerebellum via the middle cerebellar peduncle. They therefore allow modification of actions in the light of their outcome, or error correction, and are hence important in learning motor skills. [WP,unvetted]." [Wikipedia:Pontine_nuclei] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "nuclei pontis" RELATED [BTO:0003396] synonym: "pontine gray" EXACT [NIF_GrossAnatomy:birnlex_1516] synonym: "pontine gray matter" RELATED [BTO:0003396] synonym: "pontine nuclear complex" EXACT [NIF_GrossAnatomy:birnlex_1516] synonym: "pontine nuclear group" EXACT [FMA:72512] synonym: "pontine nuclei" EXACT [] synonym: "pontine nucleus" EXACT [] xref: ABA:PG xref: BM:Pons-PGr xref: BTO:0003396 xref: FMA:72512 xref: MA:0001021 xref: NIF_GrossAnatomy:birnlex_1516 xref: SCTID:304942009 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0006331 ! implied link automatically realized ! brainstem nucleus is_a: UBERON:0009662 ! implied link automatically realized ! hindbrain nucleus relationship: part_of UBERON:0002567 ! basal part of pons relationship: spatially_disjoint_from UBERON:0002143 {source="ABA"} ! dorsal tegmental nucleus relationship: spatially_disjoint_from UBERON:0002147 {source="ABA"} ! reticulotegmental nucleus relationship: spatially_disjoint_from UBERON:0002149 {source="ABA"} ! superior salivatory nucleus relationship: spatially_disjoint_from UBERON:0002633 {source="ABA"} ! motor nucleus of trigeminal nerve relationship: spatially_disjoint_from UBERON:0002682 {source="ABA"} ! abducens nucleus relationship: spatially_disjoint_from UBERON:0002963 {source="ABA"} ! caudal pontine reticular nucleus relationship: spatially_disjoint_from UBERON:0002968 {source="ABA"} ! central gray substance of pons relationship: spatially_disjoint_from UBERON:0003011 {source="ABA"} ! facial motor nucleus relationship: spatially_disjoint_from UBERON:0007632 {source="ABA"} ! barrington's nucleus [Term] id: UBERON:0002152 name: middle cerebellar peduncle alt_id: UBERON:FMA_72515-MA_0002745 def: "The middle cerebellar peduncles (brachia pontis) are composed entirely of centripetal fibers, which arise from the cells of the nuclei pontis of the opposite side and end in the cerebellar cortex; the fibers are arranged in three fasciculi, superior, inferior, and deep. The superior fasciculus, the most superficial, is derived from the upper transverse fibers of the pons; it is directed backward and lateralward superficial to the other two fasciculi, and is distributed mainly to the lobules on the inferior surface of the cerebellar hemisphere and to the parts of the superior surface adjoining the posterior and lateral margins. The inferior fasciculus is formed by the lowest transverse fibers of the pons; it passes under cover of the superior fasciculus and is continued downward and backward more or less parallel with it, to be distributed to the folia on the under surface close to the vermis. The deep fasciculus comprises most of the deep transverse fibers of the pons. It is at first covered by the superior and inferior fasciculi, but crosses obliquely and appears on the medial side of the superior, from which it receives a bundle; its fibers spread out and pass to the upper anterior cerebellar folia. The fibers of this fasciculus cover those of the restiform body. [WP,unvetted]." [Wikipedia:Middle_cerebellar_peduncle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "brachium pontis" EXACT [NIF_GrossAnatomy:birnlex_1529] xref: BM:Pons-BP xref: FMA:72515 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2b/Gray705.png/200px-Gray705.png xref: MA:0002745 xref: NIF_GrossAnatomy:birnlex_1529 xref: NIF_GrossAnatomy:birnlex_1699 xref: SCTID:279219000 is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter is_a: UBERON:0007416 ! cerebellar peduncle relationship: part_of UBERON:0002298 ! brainstem relationship: part_of UBERON:0002567 {source="FMA"} ! basal part of pons [Term] id: UBERON:0002153 name: fastigial nucleus alt_id: UBERON:FMA_72537-MA_0001009 def: "The fastigial nucleus or nucleus fastigii refers specifically to the concentration of gray matter nearest to the middle line at the anterior end of the superior vermis, and immediately over the roof of the fourth ventricle, from which it is separated by a thin layer of white matter. It is smaller than the nucleus dentatus, but somewhat larger than the nucleus emboliformis and nucleus globosus, the other two independent centers of gray matter in the cerebellum. [WP,unvetted]." [Wikipedia:Fastigial_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "medial (fastigial) nucleus" EXACT [] synonym: "medial cerebellar nucleus" EXACT [] synonym: "roof nucleus-1" EXACT [] xref: ABA:FN xref: BM:CB-CBM xref: FMA:72537 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/23/Gray707.png/200px-Gray707.png xref: MA:0001009 xref: NIF_GrossAnatomy:birnlex_1146 is_a: UBERON:0002130 ! cerebellar nuclear complex is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002946 ! implied link automatically realized ! regional part of cerebellum is_a: UBERON:0009662 ! implied link automatically realized ! hindbrain nucleus relationship: part_of UBERON:0002130 ! cerebellar nuclear complex relationship: spatially_disjoint_from UBERON:0002132 {source="ABA"} ! dentate nucleus [Term] id: UBERON:0002154 name: lateral reticular nucleus alt_id: UBERON:FMA_72574-MA_0001047-ZFA_0000535 def: "The lateral reticular nucleus, of the funiculus, can be divided into three subnuclei, the parvocellular, magnocellular and the subtrigeminal. As is typical of the reticular formation, none of these are very distinct subnuclei, but rather blurred distinctions between cell types and location. The lateral reticular nucleus sends all of its projections to the cerebellum. The parvocellular portion of the LRN and the immediately adjacent magnocellular portion send most their projections to the vermis of the cerebellum. The rest of the magnocellular subnucleus sends its projections to the hemisphere regions of the cerebellum. The subtrigeminal nucleus sends its projections to the flocculonodular lobe. All of these efferent pathways are projected in an ipsilateral manner to the cerebellum, the most abundant of which are those to the vermis. This nucleus is also involved in the mediation of inspiration (in-breathing) with a part of the ventral r. nucleus. The afferent pathways to the LRN come from the spinal cord and higher brain structures. Most of the afferents come from the ipsilateral dorsal horn of the spinal cord and project exclusively to the parts of the LRN that do not receive input from the cortex. The spinal cord projections terminate mostly in the parvocellular region along with the adjacent magnocellular cells. This implies that most input from the spinal cord is relayed into the vermis. [WP,unvetted]." [Wikipedia:Lateral_reticular_nucleus] comment: Comment: note in ABA this is disjoint from MDR, but we relax this here to accomodate FMA subset: uberon_slim subset: vertebrate_core synonym: "lateral reticular nucleus (medulla)" EXACT [] xref: ABA:LRN xref: BM:LR xref: FMA:72574 xref: MA:0001047 xref: NIF_GrossAnatomy:nlx_anat_20081246 xref: TAO:0000535 xref: ZFA:0000535 is_a: UBERON:0002579 ! implied link automatically realized ! regional part of medullary reticular formation is_a: UBERON:0007635 {source="FMA"} ! nucleus of medulla oblongata relationship: part_of UBERON:0009775 intersection_of: UBERON:0002308 ! nucleus of brain intersection_of: part_of UBERON:0009775 ! lateral medullary reticular complex relationship: part_of UBERON:0009775 {source="FMA"} ! lateral medullary reticular complex relationship: spatially_disjoint_from UBERON:0001719 {source="ABA"} ! nucleus ambiguus relationship: spatially_disjoint_from UBERON:0002127 {source="ABA"} ! inferior olivary complex relationship: spatially_disjoint_from UBERON:0002155 {source="ABA"} ! gigantocellular nucleus relationship: spatially_disjoint_from UBERON:0002673 {source="ABA"} ! vestibular nuclear complex relationship: spatially_disjoint_from UBERON:0002870 {source="ABA"} ! dorsal motor nucleus of vagus nerve relationship: spatially_disjoint_from UBERON:0002871 {source="ABA"} ! hypoglossal nucleus relationship: spatially_disjoint_from UBERON:0002872 {source="ABA"} ! inferior salivatory nucleus relationship: spatially_disjoint_from UBERON:0002877 {source="ABA"} ! parasolitary nucleus [Term] id: UBERON:0002155 name: gigantocellular nucleus alt_id: UBERON:FMA_72576-MA_0001037 def: "The gigantocellular nucleus, as the name indicates, is mainly composed of the so called giant neuronal cells. This nucleus has been known to innervate the caudal hypoglossal nucleus, and responds to glutamateric stimuli. The gigantocellular nucleus excites the hypoglossal nucleus, and can play a role in the actions of the said nerve . This nucleus receives connections from the periaqueductal gray, the paraventricular hypothalamic nucleus, central nucleus of the amygdala, lateral hypothalamic area, and parvocellular reticular nucleus. Retrograde studies have shown that the deep mesencephalic reticular formation and oral pontine reticular nucleus project to the nucleus gigantocellularis. The dorsal rostral section of the nucleus reticularis gigantocellularis is also involved mediating in expiration (or out-breathing) along with the parvocellular nucleus. [WP,unvetted]." [Wikipedia:Gigantocellular_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "gigantocellular reticular nucleus" EXACT [] synonym: "nucleus gigantocellularis" EXACT [FMA:72576, FMA:TA] xref: ABA:GRN xref: FMA:72576 xref: MA:0001037 xref: NIF_GrossAnatomy:nlx_anat_1005001 is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0007635 ! implied link automatically realized ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 ! medulla oblongata relationship: spatially_disjoint_from UBERON:0001719 {source="ABA"} ! nucleus ambiguus relationship: spatially_disjoint_from UBERON:0002127 {source="ABA"} ! inferior olivary complex relationship: spatially_disjoint_from UBERON:0002154 {source="ABA"} ! lateral reticular nucleus relationship: spatially_disjoint_from UBERON:0002559 {source="ABA"} ! medullary reticular formation relationship: spatially_disjoint_from UBERON:0002673 {source="ABA"} ! vestibular nuclear complex relationship: spatially_disjoint_from UBERON:0002870 {source="ABA"} ! dorsal motor nucleus of vagus nerve relationship: spatially_disjoint_from UBERON:0002871 {source="ABA"} ! hypoglossal nucleus relationship: spatially_disjoint_from UBERON:0002872 {source="ABA"} ! inferior salivatory nucleus relationship: spatially_disjoint_from UBERON:0002877 {source="ABA"} ! parasolitary nucleus [Term] id: UBERON:0002156 name: nucleus raphe magnus alt_id: UBERON:FMA_72584-MA_0001024 def: "The nucleus raphe magnus, located directly rostral to the raphe obscurus, is afferently stimulated from axons in the spinal cord and cerebellum. This makes the magnus a likely candidate for part of the motor system; however, it seems to participate in the endogenous analgesia system. The magnus receives descending afferents from the periaqueductal gray, the paraventricular hypothalamic nucleus, central nucleus of the amygdala, lateral hypothalamic area, parvocellular reticular nucleus and the prelimbic, infralimbic, medial and lateral precentral cortices . All of these brain areas influence the main function of the raphe magnus. The main function of the magnus is mostly pain mediation; in fact it sends projections to the dorsal horn of the spinal cord to directly inhibit pain. The periaquiductal gray, the epicenter of analgesia, sends efferent connections to the nucleus raphe magnus in when it is stimulated by opiates (endogenous or otherwise). Electrical stimulation of the PAG produces analgesia, as well as administration of morphine to the PAG or n.r. magnus. The antinociceptic effects of electrical stimulation of the PAG can be blocked by administering naloxone, an opiate antagonist, to the n.r. magnus. All of this seems to indicate that the magnus is part of the endogenous opiate system, and acts to inhibit pain in the spinal cord. [WP,unvetted]." [Wikipedia:Nucleus_raphe_magnus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "magnus raphe nucleus" EXACT [] synonym: "nucleus raphes magnus" EXACT [FMA:72584, FMA:TA] synonym: "raphe magnus" RELATED [Wikipedia:Nucleus_raphe_magnus] synonym: "raphe magnus nucleus" EXACT [NIF_GrossAnatomy:birnlex_1363] xref: ABA:RM xref: EFO:0002518 xref: FMA:72584 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/94/Gray694.png/200px-Gray694.png xref: MA:0001024 xref: NIF_GrossAnatomy:birnlex_1363 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002677 ! implied link automatically realized ! regional part of medullary raphe nuclear complex is_a: UBERON:0007635 ! implied link automatically realized ! nucleus of medulla oblongata relationship: part_of UBERON:0002692 {source="FMA", source="NIF", source="Wikipedia"} ! medullary raphe nuclear complex relationship: spatially_disjoint_from UBERON:0002157 {source="ABA"} ! nucleus raphe pallidus relationship: spatially_disjoint_from UBERON:0002684 {source="ABA"} ! nucleus raphe obscurus [Term] id: UBERON:0002157 name: nucleus raphe pallidus alt_id: UBERON:FMA_72586-MA_0001051 def: "The nucleus raphe pallidus receives afferent connections from the periaqueductal gray, the paraventricular hypothalamic nucleus, central nucleus of the amygdala, lateral hypothalamic area, and parvocellular reticular nucleus. Also, the pallidus receives afferents from the medial preoptic area, median preoptic nucleus and lateral paragigantocellular reticular nuclei . The pallidus has recently been shown to be involved in the activation of a fever as an immunoreaction. It has been implied that the preoptic area is constantly inhibiting the raphe pallidus, especially the rostral portion, with GABA. When the preoptic area receives immune signals from the body, the inhibition stops and the rostral portion of the raphe pallidus excites the intermediolateral cell column, which induces a fever . The raphe pallidus has also been known to mediate the tachycardia response, an extremely high heart rate known to be incited by emotional or psychological stress. Microinjections of a GABA-a antagonist into the raphe pallidus, induces an increased heart rate. Conversely, microinjections of muscimol, a GABA-a agonist, inhibit tachycardia in rats under air-stress stimuli. In both of these cases, GABA is mediating two different sympathetic responses, so clearly the nucleus raphe pallidus is a far more a complex nucleus than previously thought. [WP,unvetted]." [Wikipedia:Nucleus_raphe_pallidus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "nucleus raphes pallidus" EXACT [FMA:72586, FMA:TA] synonym: "pallidal raphe nucleus" EXACT [] synonym: "raphe pallidus nucleus" EXACT [] xref: ABA:RPA xref: FMA:72586 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/94/Gray694.png/200px-Gray694.png xref: MA:0001051 xref: NIF_GrossAnatomy:birnlex_1375 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002677 ! implied link automatically realized ! regional part of medullary raphe nuclear complex is_a: UBERON:0007635 ! implied link automatically realized ! nucleus of medulla oblongata relationship: part_of UBERON:0002692 {source="FMA"} ! medullary raphe nuclear complex relationship: spatially_disjoint_from UBERON:0002156 {source="ABA"} ! nucleus raphe magnus relationship: spatially_disjoint_from UBERON:0002684 {source="ABA"} ! nucleus raphe obscurus [Term] id: UBERON:0002158 name: principal inferior olivary nucleus alt_id: UBERON:FMA_72592-MA_0001046 def: "The inferior olivary nucleus that consists of the major laminar structure." [Wikipedia:Olivary_body#Olivary_nuclei] comment: This class was created automatically from a combination of ontologies synonym: "chief inferior olivary nucleus" EXACT [] synonym: "convoluted olive" EXACT [NIF_GrossAnatomy:nlx_anat_20081248] synonym: "inferior olivary complex, principal olive" EXACT [] synonym: "inferior olive principal nucleus" EXACT [] synonym: "inferior olive, principal nucleus" EXACT [] synonym: "main olivary nucleus" EXACT [] synonym: "nucleus olivaris principalis" EXACT [FMA:72592, FMA:TA] synonym: "principal nucleus of inferior olive" EXACT [] synonym: "principal olivary nucleus" EXACT [] synonym: "principal olive" EXACT [NIF_GrossAnatomy:nlx_anat_20081248] xref: FMA:72592 xref: MA:0001046 xref: NIF_GrossAnatomy:nlx_anat_20081248 is_a: UBERON:0007244 ! inferior olivary nucleus [Term] id: UBERON:0002159 name: medial accessory inferior olivary nucleus alt_id: UBERON:FMA_72594-MA_0001045 def: "The inferior olivary nucleus that lies between the primary olivary nucleus and the pyramid, and forms a curved lamina, the concavity of which is directed laterally" [Wikipedia:Olivary_body#Olivary_nuclei] comment: This class was created automatically from a combination of ontologies synonym: "inferior olivary complex, medial accessory olive" EXACT [] synonym: "inferior olive medial nucleus" EXACT [] synonym: "inferior olive, medial nucleus" EXACT [] synonym: "medial accessory olivary nucleus" EXACT [] synonym: "nucleus olivaris accessorius medialis" EXACT [FMA:72594, FMA:TA] xref: FMA:72594 xref: MA:0001045 xref: SCTID:369069003 is_a: UBERON:0007244 ! inferior olivary nucleus [Term] id: UBERON:0002160 name: nucleus prepositus alt_id: UBERON:FMA_72596-MA_0001023 comment: This class was created automatically from a combination of ontologies synonym: "nucleus praepositus" EXACT [NIF_GrossAnatomy:birnlex_2652] synonym: "nucleus prepositus hypoglossus" RELATED [] synonym: "prepositus hypoglossal nucleus" EXACT [] synonym: "prepositus nucleus" EXACT [] xref: ABA:PRP xref: FMA:72596 xref: MA:0001023 xref: NIF_GrossAnatomy:birnlex_2652 xref: SCTID:369078009 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0006331 ! implied link automatically realized ! brainstem nucleus is_a: UBERON:0009662 ! implied link automatically realized ! hindbrain nucleus relationship: part_of UBERON:0000988 ! pons relationship: spatially_disjoint_from UBERON:0002881 {source="ABA"} ! sublingual nucleus [Term] id: UBERON:0002161 name: gracile nucleus alt_id: UBERON:FMA_72602-MA_0001038 def: "Located in the medulla oblongata, the gracile nucleus is one of the dorsal column nuclei that participate in the sensation of fine touch and proprioception of the lower body (legs and trunk). It contains second-order neurons of the dorsal column-medial lemniscus system, which receive inputs from sensory neurons of the dorsal root ganglia and send axons that synapse in the thalamus. The neurons contained within the nucleus form a visible bump called the gracile tubercle on the posterior side of the closed medulla at the floor of the fourth ventricle. The gracile nucleus and fasciculus carry epicritic, kinesthetic, and conscious proprioceptive information from the lower part of the body (below the level of T6 in the spinal cord). The counterpart to the gracile nucleus and fasciculus is the cuneate nucleus and fasciculus, which carries the same type of information, but from the upper body (above T6, excepting the face and ear - the information from the face and ear is carried by the primary sensory trigeminal nucleus). [WP,unvetted]." [Wikipedia:Gracile_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Goll's nucleus" EXACT [] synonym: "golls nucleus" EXACT [NIF_GrossAnatomy:birnlex_2643] synonym: "nucleus gracilis" EXACT [NIF_GrossAnatomy:birnlex_2643] xref: ABA:GR xref: BM:Me-Gr xref: EV:0100280 xref: FMA:72602 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/df/Gray688.png/200px-Gray688.png xref: MA:0001038 xref: NIF_GrossAnatomy:birnlex_2643 xref: SCTID:369071003 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0007635 ! implied link automatically realized ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 ! medulla oblongata relationship: spatially_disjoint_from UBERON:0002045 {source="ABA"} ! cuneate nucleus [Term] id: UBERON:0002162 name: area postrema alt_id: UBERON:FMA_72607-MA_0001034-ZFA_0005146 def: "An area of medulla oblongata, outside the blood-brain barrier. The apical terminals of the neurons are, in a strategic location either to monitor the chemical constitution of the plasma or to release neurogenic substances into the general circulation. Ma 1997." [Wikipedia:Area_postrema, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core xref: ABA:AP xref: BTO:0003425 xref: FMA:72607 xref: GAID:591 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/77/Gray709.png/200px-Gray709.png xref: MA:0001034 xref: MESH:A.08.186.211.132.810.406.286 xref: NIF_GrossAnatomy:birnlex_2636 xref: SCTID:369039005 xref: TAO:0005146 xref: ZFA:0005146 is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0005408 ! circumventricular organ relationship: part_of UBERON:0001896 ! medulla oblongata relationship: spatially_disjoint_from UBERON:0002126 {source="ABA"} ! solitary tract nuclear complex relationship: spatially_disjoint_from UBERON:0002591 {source="ABA"} ! oral part of spinal trigeminal nucleus relationship: spatially_disjoint_from UBERON:0002610 {source="ABA"} ! cochlear nuclear complex relationship: spatially_disjoint_from UBERON:0002864 {source="ABA"} ! accessory cuneate nucleus relationship: spatially_disjoint_from UBERON:0002866 {source="ABA"} ! caudal part of spinal trigeminal nucleus relationship: spatially_disjoint_from UBERON:0002873 {source="ABA"} ! interpolar part of spinal trigeminal nucleus relationship: spatially_disjoint_from UBERON:0007633 {source="ABA"} ! nucleus of trapezoid body [Term] id: UBERON:0002163 name: inferior cerebellar peduncle alt_id: UBERON:FMA_72615-MA_0002744 def: "The upper part of the posterior district of the medulla oblongata is occupied by the inferior peduncle, a thick rope-like strand situated between the lower part of the fourth ventricle and the roots of the glossopharyngeal and vagus nerves. Each cerebellar inferior peduncle connects the medulla spinalis and medulla oblongata with the cerebellum, and comprises the juxtarestiform body and restiform body. Important fibers running through the inferior cerebellar peduncle include the spinocerebellar tract and axons from the inferior olivary nucleus, among others. [WP,unvetted]." [Wikipedia:Inferior_cerebellar_peduncle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "corpus restiforme" EXACT [FMA:72615, FMA:TA] synonym: "inferior peduncle" RELATED [Wikipedia:Inferior_cerebellar_peduncle] synonym: "restiform body" EXACT [NIF_GrossAnatomy:birnlex_1691] xref: BM:RB xref: FMA:72615 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fc/Gray677.png/200px-Gray677.png xref: MA:0002744 xref: NIF_GrossAnatomy:birnlex_1645 xref: NIF_GrossAnatomy:birnlex_1691 xref: SCTID:362418008 is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter is_a: UBERON:0007416 ! cerebellar peduncle relationship: part_of UBERON:0001896 {source="FMA"} ! medulla oblongata [Term] id: UBERON:0002164 name: tectobulbar tract alt_id: UBERON:FMA_72645-ZFA_0000446 def: "a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the optic tectum towards target cells in the premotor reticulospinal system in the hindbrain." [GO:0034429] comment: This class was created automatically from a combination of ontologies subset: vertebrate_core synonym: "tecto-bulbar tract" EXACT [] xref: FMA:72645 xref: NIF_GrossAnatomy:birnlex_750 xref: SCTID:369265000 xref: TAO:0000446 xref: ZFA:0000446 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002165 name: endocardium alt_id: UBERON:FMA_7280-XAO_0000066-ZFA_0001320 def: "The endocardium is an anatomical structure comprised of an endothelium and an extracellular matrix that forms the innermost layer of tissue of the heart, and lines the heart chambers[GO]. Tunica intima which has as its parts the endothelium of endocardium and the fibroelastic connective tissue that surrounds the cavity of a cardiac chamber[FMA]." [FMA:7280, Wikipedia:Endocardium] comment: fixed in GO to reflect FMA. See email to David/Varsha June 18 2010 subset: uberon_slim subset: vertebrate_core synonym: "heart endocardium" EXACT [] xref: AAO:0010408 xref: BTO:0000387 xref: EFO:0000821 xref: EHDAA2:0004153 xref: EV:0100021 xref: FMA:7280 xref: GAID:550 xref: galen:Endocardium xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6c/Gray493.png/200px-Gray493.png xref: MA:0000076 xref: MAT:0000455 xref: MESH:A.07.541.207 xref: ncithesaurus:Endocardium xref: OG:0000084 xref: OpenCyc:Mx4rsWA75K1cEduAAADggVaqvw xref: SCTID:362013006 xref: TAO:0001320 xref: XAO:0000066 xref: ZFA:0001320 is_a: UBERON:0002523 ! tunica intima is_a: UBERON:0005983 ! implied link automatically realized ! heart layer relationship: develops_from UBERON:0003084 ! heart primordium relationship: has_part UBERON:0001986 ! endothelium relationship: has_part UBERON:0006225 {source="UBERON"} ! endocardial tissue relationship: part_of UBERON:0000948 ! heart [Term] id: UBERON:0002166 name: endocardium of atrium alt_id: UBERON:FMA_7284-MA_0000077-ZFA_0001614 def: "Endocardium that is part of the atrium." [ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: vertebrate_core synonym: "atrial endocardium" EXACT [] synonym: "atrium endocardium" EXACT [] synonym: "atrium of heart endocardium" EXACT [OBOL:automatic] synonym: "Cardiac atria endocardium" EXACT [OBOL:automatic] synonym: "cardiac atrium endocardium" EXACT [OBOL:automatic] synonym: "endocardium of atrium of heart" EXACT [OBOL:automatic] synonym: "endocardium of Cardiac atria" EXACT [OBOL:automatic] synonym: "endocardium of cardiac atrium" EXACT [OBOL:automatic] synonym: "endocardium of heart atrium" EXACT [OBOL:automatic] synonym: "heart atrium endocardium" EXACT [OBOL:automatic] xref: FMA:7284 xref: MA:0000077 xref: OG:0000606 xref: SCTID:192001005 xref: ZFA:0001614 is_a: UBERON:0002165 ! endocardium relationship: part_of UBERON:0002081 intersection_of: UBERON:0002165 ! endocardium intersection_of: part_of UBERON:0002081 ! cardiac atrium relationship: part_of UBERON:0002081 ! cardiac atrium [Term] id: UBERON:0002167 name: right lung alt_id: UBERON:FMA_7309-MA_0000426 def: "Lung which consists of the right upper lobe, middle lobe and right lower lobe.[FMA]" [FMA:FMA, Wikipedia:Right_lung] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: EHDAA:4969 xref: EHDAA2:0001730 xref: EMAPA:17661 xref: FMA:7309 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/32/Gray972.png/200px-Gray972.png xref: MA:0000426 xref: ncithesaurus:Right_Lung xref: OG:0000301 xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rvVjKy5wpEbGdrcN5Y29ycA xref: SCTID:361967000 is_a: UBERON:0002048 ! implied link automatically realized ! lung relationship: in_right_side_of UBERON:0000170 intersection_of: UBERON:0002048 ! lung intersection_of: in_right_side_of UBERON:0000170 ! pair of lungs [Term] id: UBERON:0002168 name: left lung alt_id: UBERON:FMA_7310-MA_0000425 def: "Lung which consists of the left upper lobe and left lower lobe.[FMA]" [FMA:FMA, Wikipedia:Left_lung] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: EHDAA:4947 xref: EHDAA2:0000943 xref: EMAPA:17653 xref: FMA:7310 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/dd/Gray973.png/200px-Gray973.png xref: MA:0000425 xref: ncithesaurus:Left_Lung xref: OG:0000618 xref: OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rvVjKy5wpEbGdrcN5Y29ycA xref: SCTID:361982005 is_a: UBERON:0002048 ! implied link automatically realized ! lung relationship: in_left_side_of UBERON:0000170 intersection_of: UBERON:0002048 ! lung intersection_of: in_left_side_of UBERON:0000170 ! pair of lungs [Term] id: UBERON:0002169 name: alveolar sac alt_id: UBERON:0008871 alt_id: UBERON:FMA_7317-MA_0000418 def: "the small terminal dilation of the alveolar ducts around which the alveoli form pocket-like clusters" [MP:0010902, Wikipedia:Alveolar_sac] subset: uberon_slim synonym: "air sac" RELATED [MP:0010902] synonym: "pulmonary alveolar sac" EXACT [MP:0010902] synonym: "sacculus alveolaris" EXACT [FMA:7317] xref: BTO:0000061 xref: FMA:7317 xref: MA:0000418 xref: ncithesaurus:Alveolar_Sac xref: OpenCyc:Mx4rwCvh75wpEbGdrcN5Y29ycA is_a: UBERON:0000115 ! implied link automatically realized ! lung epithelium is_a: UBERON:0007499 ! implied link automatically realized ! epithelial sac relationship: part_of UBERON:0008874 intersection_of: UBERON:0007499 ! epithelial sac intersection_of: part_of UBERON:0008874 ! pulmonary acinus relationship: part_of UBERON:0006524 {source="MA"} ! alveolar system relationship: part_of UBERON:0008874 {source="FMA"} ! pulmonary acinus [Term] id: UBERON:0002170 name: upper lobe of right lung alt_id: UBERON:FMA_7333-MA_0000429 def: "The lobe of the right lung that is closest to the head." [UBERON:cjm] synonym: "lobus superior pulmonis dextri" EXACT [FMA:TA] synonym: "right cranial lobe of lung" EXACT [] synonym: "right lung cranial lobe" EXACT [MA:0000429] synonym: "right lung superior lobe" RELATED [MA:0000429] synonym: "right upper lobe" EXACT [FMA:7333] synonym: "right upper lobe of lung" EXACT [FMA:7333] synonym: "superior lobe of right lung" EXACT [FMA:7333] synonym: "upper lobe of right lung" EXACT [galen:UpperLobeOfRightLung] xref: EHDAA:4987 xref: EHDAA2:0001747 xref: EMAPA:17991 xref: FMA:7333 xref: galen:UpperLobeOfRightLung xref: MA:0000429 xref: ncithesaurus:Upper_Lobe_of_the_Right_Lung xref: OG:0000859 xref: SCTID:361969002 is_a: UBERON:0006518 ! implied link automatically realized ! right lung lobe is_a: UBERON:0008948 {source="FMA"} ! upper lobe of lung relationship: part_of UBERON:0002167 intersection_of: UBERON:0008948 ! upper lobe of lung intersection_of: part_of UBERON:0002167 ! right lung [Term] id: UBERON:0002171 name: lower lobe of right lung alt_id: UBERON:FMA_7337-MA_0000428 def: "The lobe of the right lung that is furtherst from the head." [UBERON:cjm] synonym: "inferior lobe of right lung" EXACT [FMA:7337] synonym: "lobus inferior pulmonis dextri" EXACT [FMA:7337, FMA:TA] synonym: "lower lobe of right lung" EXACT [galen:LowerLobeOfRightLung] synonym: "right caudal lobe of lung" EXACT [] synonym: "right lower lobe" EXACT [FMA:7337] synonym: "right lower lobe of lung" EXACT [FMA:7337] synonym: "right lung caudal lobe" RELATED [MA:0000428] synonym: "right lung inferior lobe" RELATED [MA:0000428] xref: EHDAA:4979 xref: EHDAA2:0001740 xref: EMAPA:17986 xref: FMA:7337 xref: galen:LowerLobeOfRightLung xref: MA:0000428 xref: ncithesaurus:Lower_Lobe_of_the_Right_Lung xref: OG:0000857 xref: SCTID:361976007 is_a: UBERON:0006518 ! implied link automatically realized ! right lung lobe is_a: UBERON:0008949 {source="FMA"} ! lower lobe of lung relationship: part_of UBERON:0002167 intersection_of: UBERON:0008949 ! lower lobe of lung intersection_of: part_of UBERON:0002167 ! right lung [Term] id: UBERON:0002172 name: alveolar atrium alt_id: UBERON:FMA_7340-MA_0000419 synonym: "alveolus of lung atrium" EXACT [OBOL:automatic] synonym: "atrium alveolare" EXACT [] synonym: "atrium of alveolus" EXACT [] synonym: "atrium of alveolus of lung" EXACT [OBOL:automatic] synonym: "atrium of lung alveolus" EXACT [OBOL:automatic] synonym: "lung alveolus atrium" EXACT [OBOL:automatic] xref: FMA:7340 xref: MA:0000419 xref: SCTID:201806004 is_a: UBERON:0000064 ! organ part is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0002299 ! alveolus of lung [Term] id: UBERON:0002173 name: alveolar duct alt_id: UBERON:FMA_7341-MA_0000417 def: "Alveolar ducts are the tiny end ducts of the branching airways that fill the lungs. Each lung holds approximately 1.5 to 2 million of them. The tubules divide into two or three alveolar sacs at the distal end. They are formed from the confluence openings of several alveoli. Distal terminations of alveolar ducts are atria which then end in alveolar sacs. In human anatomy, respiratory bronchioles exists proximal to the alveolar ducts. The epithelial lining consists of smooth muscle knobs covered by nonciliated, simple cuboidal cells. The smooth muscle constricts under parasympathetic innervation and relax under sympathetic innervation. [WP,unvetted]." [Wikipedia:Alveolar_duct] subset: uberon_slim xref: EMAPA:19183 xref: EMAPA:19185 xref: EMAPA:19187 xref: EMAPA:19189 xref: EMAPA:19191 xref: FMA:7341 xref: MA:0000417 xref: ncithesaurus:Alveolar_Duct xref: OpenCyc:Mx4rvXmfV5wpEbGdrcN5Y29ycA is_a: UBERON:0000058 ! duct is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0002048 ! lung relationship: part_of UBERON:0006524 ! alveolar system [Term] id: UBERON:0002174 name: middle lobe of right lung alt_id: UBERON:FMA_7383-MA_0000430 def: "In the human, the right lung is divided into three lobes (as opposed to two lobes on the left), superior, middle, and inferior, by two interlobular fissures: [WP,unvetted]." [Wikipedia:Middle_lobe_of_right_lung] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "intermediate lobe of right lung" EXACT [] synonym: "lobus medius pulmonis dextri" EXACT [FMA:7383, FMA:TA] synonym: "middle lobe of lung" BROAD [FMA:7383] synonym: "right lung middle lobe" EXACT [] synonym: "right lung, middle lobe" EXACT [] synonym: "right middle lobe" EXACT [] synonym: "right middle lobe of lung" EXACT [] xref: EMAPA:17997 xref: FMA:7383 xref: galen:MiddleLobeOfRightLung xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/32/Gray972.png/200px-Gray972.png xref: MA:0000430 xref: ncithesaurus:Middle_Lobe_of_the_Right_Lung xref: SCTID:361973004 is_a: UBERON:0006518 ! implied link automatically realized ! right lung lobe is_a: UBERON:0008955 ! middle lobe/projection of lung relationship: part_of UBERON:0002167 ! right lung [Term] id: UBERON:0002175 name: intermediolateral nucleus alt_id: UBERON:FMA_73915-MA_0002753 def: "The intermediolateral nucleus is a region of gray matter found in Rexed lamina VII of the spinal column. Rexed Lamina VII contains several well defined nuclei including the nucleus dorsalis, the intermediolateral cell column (lateral gray horn), and the sacral autonomic nucleus. It extends from the first thoracic through the third lumbar segment, and contains the autonomic motor neurons that give rise to the preganglionic fibers of the sympathetic system. [WP,unvetted]." [Wikipedia:Intermediolateral_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "intermediolateral nucleus of spinal cord" EXACT [] synonym: "nucleus intermediolateralis medullae spinalis" EXACT [FMA:73915, FMA:TA] synonym: "spinal cord intermediolateral nucleus" EXACT [] xref: FMA:73915 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c0/Medulla_spinalis_-_Substantia_grisea_-_English.svg/200px-Medulla_spinalis_-_Substantia_grisea_-_English.svg.png xref: MA:0002753 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0002240 ! spinal cord [Term] id: UBERON:0002176 name: lateral cervical nucleus alt_id: UBERON:FMA_73921-MA_0002755 comment: This class was created automatically from a combination of ontologies xref: FMA:73921 xref: MA:0002755 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0002256 ! dorsal horn of spinal cord [Term] id: UBERON:0002177 name: right main bronchus alt_id: UBERON:FMA_7395-MA_0001849 def: "The right main bronchus (or right primary bronchus, or right principal bronchus) is a bronchus of the respiratory system. It is wider, shorter, and more vertical in direction than the left. It is about 2.5 cm. long, and enters the right lung nearly opposite the fifth thoracic vertebra. The azygos vein arches over it from behind; and the right pulmonary artery lies at first below and then in front of it. About 2 cm. from its commencement it gives off a branch to the upper lobe of the right lung. This is termed the eparterial branch of the bronchus, because it arises above the right pulmonary artery. The bronchus now passes below the artery, and is known as the hyparterial branch; it divides into two branches for the middle and lower lobes. [WP,unvetted]." [Wikipedia:Right_main_bronchus] subset: uberon_slim synonym: "right bronchus" EXACT [] synonym: "right primary bronchus" EXACT [Wikipedia:Right_main_bronchus] synonym: "right principal bronchus" EXACT [Wikipedia:Right_main_bronchus] xref: FMA:7395 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Illu_conducting_passages.jpg/200px-Illu_conducting_passages.jpg xref: MA:0001849 xref: ncithesaurus:Right_Main_Bronchus xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rvoIuvJwpEbGdrcN5Y29ycA xref: SCTID:361955002 is_a: UBERON:0002182 ! implied link automatically realized ! main bronchus relationship: continuous_with UBERON:0002167 intersection_of: UBERON:0002182 ! main bronchus intersection_of: continuous_with UBERON:0002167 ! right lung [Term] id: UBERON:0002178 name: left main bronchus alt_id: UBERON:FMA_7396-MA_0001843 def: "The left main bronchus (or left primary bronchus, or left principal bronchus) is smaller in caliber but longer than the right, being nearly 5 cm long. It enters the root of the left lung opposite the sixth thoracic vertebra. It passes beneath the aortic arch, crosses in front of the esophagus, the thoracic duct, and the descending aorta, and has the left pulmonary artery lying at first above, and then in front of it. The left bronchus has no eparterial branch, and therefore it has been supposed by some that there is no upper lobe to the left lung, but that the so-called upper lobe corresponds to the middle lobe of the right lung. [WP,unvetted]." [Wikipedia:Left_main_bronchus] subset: uberon_slim synonym: "left bronchus" EXACT [] synonym: "left primary bronchus" EXACT [Wikipedia:Left_main_bronchus] synonym: "left principal bronchus" EXACT [Wikipedia:Left_main_bronchus] xref: FMA:7396 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Illu_conducting_passages.jpg/200px-Illu_conducting_passages.jpg xref: MA:0001843 xref: ncithesaurus:Left_Main_Bronchus xref: SCTID:361959008 is_a: UBERON:0002182 ! implied link automatically realized ! main bronchus relationship: continuous_with UBERON:0002168 intersection_of: UBERON:0002182 ! main bronchus intersection_of: continuous_with UBERON:0002168 ! left lung [Term] id: UBERON:0002179 name: lateral funiculus alt_id: UBERON:FMA_74000-ZFA_0000533 def: "The most lateral of the bundles of the anterior nerve roots is generally taken as a dividing line that separates the antero-lateral region into two parts, viz. , an anterior funiculus, between the anterior median fissure and the most lateral of the anterior nerve roots; and a lateral funiculus, between the exit of these roots and the postero-lateral sulcus. [WP,unvetted]." [Wikipedia:Lateral_funiculus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "lateral funiculus of spinal cord" EXACT [] synonym: "lateral white column of spinal cord" EXACT [FMA:74000] xref: FMA:74000 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/dc/Medulla_spinalis_-_Section_-_English.svg/200px-Medulla_spinalis_-_Section_-_English.svg.png xref: SCTID:362434006 xref: TAO:0000533 xref: ZFA:0000533 is_a: UBERON:0006127 ! funiculus of spinal cord [Term] id: UBERON:0002180 name: ventral funiculus alt_id: UBERON:FMA_74003-ZFA_0000605 def: "The most lateral of the bundles of the anterior nerve roots is generally taken as a dividing line that separates the antero-lateral region into two parts, viz. , an anterior funiculus, between the anterior median fissure and the most lateral of the anterior nerve roots; and a lateral funiculus, between the exit of these roots and the postero-lateral sulcus. [WP,unvetted]." [Wikipedia:Ventral_funiculus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "anterior funiculus" EXACT [] synonym: "anterior funiculus of spinal cord" EXACT [] synonym: "anterior white column of spinal cord" EXACT [FMA:74003] synonym: "funiculus anterior medullae spinalis" EXACT [FMA:74003, FMA:TA] synonym: "ventral funiculus of spinal cord" EXACT [] synonym: "ventral white column of spinal cord" EXACT [FMA:74003] xref: FMA:74003 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/dc/Medulla_spinalis_-_Section_-_English.svg/200px-Medulla_spinalis_-_Section_-_English.svg.png xref: SCTID:362429007 xref: TAO:0000605 xref: ZFA:0000605 is_a: UBERON:0006127 ! funiculus of spinal cord [Term] id: UBERON:0002181 name: substantia gelatinosa alt_id: UBERON:FMA_74019-MA_0001124 def: "Gelatinous-appearing material in the dorsal horn of the spinal cord, consisting chiefly of Golgi type II neurons and some larger nerve cells." [MESH:A.08.186.854.610.800, Wikipedia:Substantia_gelatinosa] subset: uberon_slim synonym: "central gelatinous substance of spinal cord" EXACT [] synonym: "gelatinous substance of dorsal horn of spinal cord" EXACT [] synonym: "gelatinous substance of posterior horn of spinal cord" EXACT [] synonym: "gelatinous substance of Rolando" EXACT [FMA:74019] synonym: "substantia gelatinosa cornu posterioris medullae spinalis" EXACT [FMA:74019, FMA:TA] xref: EV:0100318 xref: FMA:74019 xref: GAID:701 xref: MA:0001124 xref: MESH:A.08.186.854.610.800 xref: ncithesaurus:Substantia_Gelatinosa is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0002256 ! dorsal horn of spinal cord [Term] id: UBERON:0002182 name: main bronchus alt_id: UBERON:FMA_7405-MA_0000438 def: "The trachea (windpipe) divides into two main bronchi." [Wikipedia:Main_bronchus] comment: This class was created automatically from a combination of ontologies subset: organ_slim subset: uberon_slim synonym: "bronchus principalis" EXACT [] synonym: "mainstem bronchus" EXACT [] synonym: "primary bronchus" EXACT [] synonym: "principal bronchus" EXACT [] xref: EFO:0000932 xref: EHDAA:3072 xref: EHDAA2:0001044 xref: EMAPA:16849 xref: FMA:7405 xref: MA:0000438 xref: ncithesaurus:Main_Bronchus xref: OG:0000370 xref: OpenCyc:Mx4rvoIuvJwpEbGdrcN5Y29ycA xref: SCTID:245508000 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002185 ! bronchus relationship: continuous_with UBERON:0002183 {source="FMA"} ! lobar bronchus relationship: continuous_with UBERON:0003126 {source="FMA"} ! trachea relationship: develops_from UBERON:0008947 {source="EHDAA2"} ! respiratory primordium [Term] id: UBERON:0002183 name: lobar bronchus alt_id: UBERON:FMA_7406-MA_0000437 def: "The lobar bronchus is the major airway within the respiratory tree that starts by division of the principal bronchi on both sides and ends at the point of its own subdivision into tertiary or segmental bronchi[GO]." [GO:0060482, Wikipedia:Lobar_bronchus] subset: organ_slim subset: uberon_slim synonym: "secondary bronchus" EXACT [] xref: EHDAA:4955 xref: EHDAA:4963 xref: EHDAA:4977 xref: EHDAA:4985 xref: EHDAA:4993 xref: EHDAA:8175 xref: EHDAA:8187 xref: EHDAA:8203 xref: EHDAA:8213 xref: EHDAA:8225 xref: EMAPA:17388 xref: EMAPA:17982 xref: EMAPA:17987 xref: EMAPA:17992 xref: EMAPA:17998 xref: FMA:7406 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/df/Illu_quiz_lung05.jpg/200px-Illu_quiz_lung05.jpg xref: MA:0000437 xref: ncithesaurus:Lobar_Bronchus xref: OpenCyc:Mx4rwQMLXJwpEbGdrcN5Y29ycA xref: SCTID:245509008 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002185 ! bronchus relationship: continuous_with UBERON:0002184 {source="FMA"} ! segmental bronchus relationship: part_of UBERON:0000101 {source="FMA"} ! lobe of lung [Term] id: UBERON:0002184 name: segmental bronchus alt_id: UBERON:FMA_7407-MA_0000439 def: "The tertiary bronchi (also known as the segmental bronchi) arise from the secondary bronchi. The respiratory epithelium lining their lumen is surrounded by a layer of smooth muscle. This layer is composed of two ribbons of smooth muscle that spiral in opposite directions. The smooth muscle layer is surrounded by irregular plates of hyaline cartilage which help maintain the patency of the airway. Each of the tertiary bronchi serves a specific bronchopulmonary segment. There are 10 tertiary bronchi in the right lung, and eight in the left. The tertiary bronchi get smaller and divide into primary bronchioles. [WP,unvetted]." [Wikipedia:Segmental_bronchus] subset: organ_slim subset: uberon_slim synonym: "tertiary bronchus" EXACT [] xref: EHDAA:7043 xref: EHDAA:7049 xref: EHDAA:7058 xref: EHDAA:7064 xref: EHDAA:7070 xref: FMA:7407 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/df/Illu_quiz_lung05.jpg/200px-Illu_quiz_lung05.jpg xref: MA:0000439 xref: ncithesaurus:Segmental_Bronchus xref: OG:0001446 xref: OpenCyc:Mx4rwQGFgZwpEbGdrcN5Y29ycA xref: SCTID:245513001 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002185 ! bronchus relationship: part_of UBERON:0000101 {source="FMA"} ! lobe of lung [Term] id: UBERON:0002185 name: bronchus alt_id: UBERON:FMA_7409-MA_0000436-MIAA_0000133-XAO_0000121 def: "A portion of the airway that connects to the lungs[GO]." [Wikipedia:Bronchus] subset: organ_slim subset: uberon_slim synonym: "bronchi" EXACT PLURAL [] synonym: "bronchial tissue" RELATED [BTO:0001340] synonym: "bronchial trunk" EXACT [] xref: BTO:0001340 xref: EFO:0000932 xref: EV:0100041 xref: FMA:7409 xref: GAID:346 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/18/Respiratory_system_complete_numbered.svg/200px-Respiratory_system_complete_numbered.svg.png xref: MA:0000436 xref: MAT:0000133 xref: MESH:A.04.411.125 xref: MIAA:0000133 xref: ncithesaurus:Bronchus xref: OG:0000262 xref: SCTID:181215002 xref: XAO:0000121 is_a: UBERON:0000062 ! organ is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure is_a: UBERON:0005178 ! implied link automatically realized ! thoracic cavity organ relationship: part_of UBERON:0002224 ! thoracic cavity relationship: part_of UBERON:0007196 ! tracheobronchial tree [Term] id: UBERON:0002186 name: bronchiole alt_id: UBERON:FMA_7410-MA_0000422 def: "the first airway branch that no longer contains cartilage; it is a branch of the bronchi[GO]." [Wikipedia:Bronchiole] subset: uberon_slim synonym: "bronchiolus" RELATED [BTO:0002375] synonym: "lobular bronchiole" EXACT [FMA:7410] xref: BTO:0002375 xref: EHDAA:8171 xref: EHDAA:8183 xref: EHDAA:8199 xref: EHDAA:8221 xref: FMA:7410 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Alveoli_diagram.png/200px-Alveoli_diagram.png xref: MA:0000422 xref: ncithesaurus:Bronchiole xref: OG:0000675 xref: OpenCyc:Mx4rvl9iDpwpEbGdrcN5Y29ycA xref: SCTID:278982001 is_a: UBERON:0000063 ! organ segment is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0002048 {source="MA"} ! lung relationship: part_of UBERON:0007196 {source="FMA"} ! tracheobronchial tree [Term] id: UBERON:0002187 name: terminal bronchiole alt_id: UBERON:FMA_7411-MA_0000424 def: "A terminal bronchiole is a bronchiole at the end of the conducting zone. At the transition into the respiratory zone, alveoli become present. The terminal bronchiole is the most distal segment of the conducting zone. Each of the terminal bronchioles divides to form respiratory bronchioles which contain a small number of alveoli. Terminal bronchioles are lined with simple cuboidal epithelium containing Clara cells. Terminal bronchioles contain a limited number of ciliated cells and no goblet cells. Clara cells are non-ciliated, rounded protein secreting cells. Their secretions are a nonsticky, proteinaceous compound to maintain the airway in the smallest bronchioles. The secretion, called surfactant, reduces surface tension allowing for bronchioles to expand during inspiration and keeping the bronchioles from collapsing during expiration. Clara cells, a stem cell of the respiratory system, produce enzymes that detoxify substances dissolved in the respiratory fluid. [WP,unvetted]." [Wikipedia:Terminal_bronchiole] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "bronchiolus terminalis" EXACT [] xref: BTO:0003223 xref: FMA:7411 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Alveoli_diagram.png/200px-Alveoli_diagram.png xref: MA:0000424 xref: ncithesaurus:Terminal_Bronchiole xref: OpenCyc:Mx4rwS7IU5wpEbGdrcN5Y29ycA xref: SCTID:278981008 is_a: UBERON:0002186 ! bronchiole [Term] id: UBERON:0002188 name: respiratory bronchiole alt_id: UBERON:FMA_7412-MA_0000423 def: "The respiratory bronchioles are interrupted by alveoli which are thin walled evaginations. Alveolar ducts are distal continuations of the respiratory bronchioles. [WP,unvetted]." [Wikipedia:Respiratory_bronchiole] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "bronchiolus respiratorius" EXACT [] xref: BTO:0003222 xref: FMA:7412 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Alveoli_diagram.png/200px-Alveoli_diagram.png xref: MA:0000423 xref: ncithesaurus:Respiratory_Bronchiole xref: OpenCyc:Mx4rwS6ki5wpEbGdrcN5Y29ycA xref: SCTID:128517006 is_a: UBERON:0002186 ! bronchiole [Term] id: UBERON:0002189 name: outer cortex of kidney alt_id: UBERON:FMA_74285-MA_0001649 comment: This class was created automatically from a combination of ontologies synonym: "outer renal cortex" EXACT [] xref: FMA:74285 xref: MA:0001649 is_a: UBERON:0001225 ! cortex of kidney [Term] id: UBERON:0002190 name: subcutaneous adipose tissue alt_id: UBERON:FMA_74315-MA_0000473 synonym: "fatty layer of subcutaneous tissue" EXACT [FMA:74315] synonym: "panniculus adiposus (tela subcutanea)" EXACT [FMA:74315, FMA:TA] synonym: "panniculus adiposus telae subcutaneae" EXACT [FMA:74315, FMA:TA] xref: BTO:0004042 xref: FMA:74315 xref: MA:0000473 is_a: UBERON:0001013 ! adipose tissue is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0002072 ! hypodermis [Term] id: UBERON:0002191 name: subiculum alt_id: UBERON:FMA_74414-MA_0000960 def: "The subiculum is the most inferior component of the hippocampal formation. It lies between the entorhinal cortex and the CA1 subfield of the hippocampus proper. It receives input from CA1 and entorhinal cortical layer III pyramidal neurons and is the main output of the hippocampus. The pyramidal neurons send projections to the nucleus accumbens, septal nuclei, prefrontal cortex, lateral hypothalamus, nucleus reuniens, mammillary nuclei, entorhinal cortex and amygdala. The pyramidal neurons in the subiculum exhibit transitions between two modes of action potential output: bursting and single spiking. The transitions between these two modes is thought to be important for routing information out of the hippocampus. It is the site responsible for ictal activity in some cases of human epilepsy. It has also been implicated in working memory and drug addiction. [WP,unvetted]." [Wikipedia:Subiculum] comment: ABA:SUB is part of the retrohippocampal region, along with the entorhinal area. this is in the hippocampal formation but not the hippocampal region subset: uberon_slim synonym: "gyrus parahippocampalis" RELATED [BTO:0003087] synonym: "subicular cortex" EXACT [NIF_GrossAnatomy:birnlex_1305] synonym: "subiculum cornu ammonis" RELATED [BTO:0003087] synonym: "subiculum hippocampi" EXACT [FMA:74414] xref: ABA:SUB xref: BM:Tel-Cx-SB xref: BTO:0003087 xref: FMA:74414 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/31/Hippocampus_%28brain%29.jpg/200px-Hippocampus_%28brain%29.jpg xref: MA:0000960 xref: ncithesaurus:Subiculum xref: NIF_GrossAnatomy:birnlex_1305 xref: SCTID:369097009 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0002421 {source="NIF_GrossAnatomy"} ! hippocampal formation relationship: spatially_disjoint_from UBERON:0001953 {source="ABA"} ! presubiculum relationship: spatially_disjoint_from UBERON:0002728 {source="ABA"} ! entorhinal area relationship: spatially_disjoint_from UBERON:0004683 {source="ABA"} ! parasubiculum [Term] id: UBERON:0002192 name: choroidal fissure alt_id: UBERON:FMA_74512-MA_0001305-XAO_0000474-ZFA_0001075 def: "The narrow cleft along the medial wall of the lateral ventricle along the margins of which the choroid plexus is attached; it lies between the upper surface of the thalamus and lateral edge of the fornix in the central part of the ventricle and between the terminal stria and fimbria hippocampi in the inferior horn[ZFA]." [ISBN:0815318960, ZFA:0001075] comment: not to be confused with optic fissure. the choroidal fissure is a subarachnoid space subset: vertebrate_core synonym: "chorioid fissure" RELATED [FMA:74512] synonym: "choroid fissure" RELATED INCONSISTENT [FMA:74512, TAO:0001075] xref: EMAPA:17768 xref: FMA:74512 xref: ncithesaurus:Choroidal_Fissure xref: SCTID:361508004 xref: TAO:0001075 xref: ZFA:0001075 is_a: UBERON:0000464 ! anatomical space disjoint_from: UBERON:0005412 ! optic fissure relationship: part_of UBERON:0005358 ! ventricle of nervous system [Term] id: UBERON:0002193 name: hemolymphoid system alt_id: UBERON:FMA_74562-MA_0000013 def: "Anatomical cluster consisting of the hematopoietic system and the lymphoid system, or its analogs." [] synonym: "haemolymphoid system" RELATED [] synonym: "hematolymphoid system" EXACT [] synonym: "lymphomyeloid complex" EXACT [] xref: EHDAA2:0004615 xref: EMAPA:18534 xref: EMAPA:18765 xref: FMA:74562 xref: MA:0000013 is_a: UBERON:0000467 {source="MA"} ! anatomical system [Term] id: UBERON:0002194 name: capsule of lymph node alt_id: UBERON:FMA_74604-MA_0000739 def: "Capsule surrounding lymph node composed of connective tissue with some plain muscle fibers. from its internal surface are given off a number of membranous processes or trabeculae, consisting, in man, of connective tissue, with a small admixture of plain muscle fibers; but in many of the lower animals composed almost entirely of involuntary muscle[WP]." [Wikipedia:Lymph_node_capsule] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "lymph node capsule" EXACT [] xref: FMA:74604 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bb/Lymphknoten_%28Schwein%29.jpg/200px-Lymphknoten_%28Schwein%29.jpg xref: MA:0000739 xref: ncithesaurus:Lymph_Node_Capsule xref: SCTID:327532004 is_a: UBERON:0003893 ! capsule relationship: surrounds UBERON:0000029 intersection_of: UBERON:0003893 ! capsule intersection_of: surrounds UBERON:0000029 ! lymph node relationship: has_part UBERON:0002384 ! connective tissue relationship: surrounds UBERON:0000029 ! lymph node [Term] id: UBERON:0002195 name: trabecula of lymph node alt_id: UBERON:FMA_74605-MA_0000746 def: "Membranous process coming from capsule of lymph node[WP]." [Wikipedia:Lymph_node_trabeculae] comment: This class was created automatically from a combination of ontologies synonym: "lymph node trabecula" EXACT [] synonym: "lymph node trabeculum" EXACT [] xref: FMA:74605 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b3/Gray598.png/200px-Gray598.png xref: MA:0000746 xref: ncithesaurus:Lymph_Node_Trabecula is_a: UBERON:0000440 ! trabecula relationship: part_of UBERON:0000029 ! lymph node [Term] id: UBERON:0002196 name: adenohypophysis alt_id: UBERON:FMA_74627-MA_0000177-ZFA_0001282 def: "The glandular, anterior lobe of the pituitary gland. The anterior pituitary regulates several physiological processes including stress, growth, and reproduction[WP]. The anterior lobe of the hypophysis (pituitary gland). This lobe contains cells that produce prolactin, growth hormone, thyroid-stimulating hormone, follicle-stimulating hormone and proopiomelanocortin. In contrast to mammalian vertebrates, the adenohypophysis remains in a subepithelial position and there exists no equivalent of Rathke's pouch in zebrafish[ZFA]." [Wikipedia:Adenohypophysis, ZFIN:curator] comment: note that BTO may contain an error here. Also note we may need to introduce taxon-specific developmental relationships: "While in most basal fish and tetrapods the adenohypophyseal anlagen invaginates to form Rathke’s pouch, in teleost fish the adenohypophyseal placode does not invaginate but rather maintains its initial organization forming a solid structure in the head"[NBK53175] subset: uberon_slim subset: vertebrate_core synonym: "anterior hypophysis" EXACT [ZFA:0001282] synonym: "anterior lobe (hypophysis)" EXACT [] synonym: "anterior lobe of hypophysis" EXACT [] synonym: "anterior lobe of pituitary" EXACT [] synonym: "anterior lobe of pituitary gland" EXACT [] synonym: "anterior pituitary" EXACT [] synonym: "anterior pituitary gland" RELATED [BTO:0000040] synonym: "lobus anterior (glandula pituitaria)" EXACT [FMA:74627, FMA:TA] synonym: "lobus anterior hypophysis" EXACT [FMA:74627, FMA:TA] synonym: "pituitary gland, anterior lobe" EXACT [] xref: AAO:0010540 xref: BM:AHy xref: BTO:0000040 xref: BTO:0000496 xref: EFO:0000230 xref: EHDAA2:0000109 xref: EMAPA:17514 xref: FMA:74627 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fb/Gray1181.png/200px-Gray1181.png xref: MA:0000177 xref: MESH:A.06.407.747.608 xref: ncithesaurus:Anterior_Lobe_of_the_Pituitary_Gland xref: NIF_GrossAnatomy:birnlex_1581 xref: OG:0000141 xref: SCTID:245532007 xref: TAO:0001282 xref: ZFA:0001282 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: develops_from UBERON:0005356 {exception="teleost", gci_filler="NCBITaxon:32523", gci_relation="part_of", source="NBK53175"} ! Rathke's pouch relationship: develops_from UBERON:0009122 {source="NBK53175", source="ZFA"} ! adenohypophyseal placode relationship: part_of UBERON:0000007 ! pituitary gland [Term] id: UBERON:0002197 name: median eminence of neurohypophysis alt_id: UBERON:FMA_74634-MA_0000859 def: "The median eminence is part of the inferior boundary for the hypothalamus part of the human brain. A small swelling on the tuber cinereum posterior to the infundibulum - atop the pituitary stalk - the median eminence lies in the area roughly bounded on its posterolateral region by the cerebral peduncles, and on its anterolateral region by the optic chiasm. The median eminence is one of the seven areas of the brain devoid of a blood-brain barrier. [WP,unvetted]." [Wikipedia:Median_eminence] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "eminentia mediana hypothalami" EXACT [FMA:74634, FMA:TA] synonym: "median eminence" EXACT [] synonym: "median eminence of hypothalamus" EXACT [] synonym: "median eminence of posterior lobe of pituitary gland" EXACT [] synonym: "median eminence of tuber cinereum" EXACT [] xref: AAO:0010539 xref: BM:ME xref: BTO:0001954 xref: EHDAA:7540 xref: EHDAA2:0001080 xref: EMAPA:17521 xref: FMA:74634 xref: GAID:463 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/HypothalamicNuclei.PNG/200px-HypothalamicNuclei.PNG xref: MA:0000859 xref: MESH:A.06.407.747.734.500 xref: NIF_GrossAnatomy:birnlex_925 xref: OG:0001179 xref: SCTID:369121004 is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0005408 ! circumventricular organ relationship: part_of UBERON:0002198 ! neurohypophysis [Term] id: UBERON:0002198 name: neurohypophysis alt_id: UBERON:FMA_74636-ZFA_0001271 def: "comprises the posterior lobe of the pituitary gland and is part of the endocrine system[WP]." [Wikipedia:Neurohypophysis] comment: Editor note - request magnocellular cell from CL. Request oxytocin secretion from GO. Notes: "The hypophysis or pituitary gland is derived, in part from an ectodermal outpocketing of the stomodeum (Rathke's Pouch) and in part from the floor of the diencephalon" [http://syllabus.med.unc.edu/courseware/embryo_images/] subset: uberon_slim subset: vertebrate_core synonym: "infundibular process" EXACT [FMA:74628] synonym: "lobus nervosus neurohypophysis" EXACT [FMA:74628, FMA:TA] synonym: "lobus posterior (glandula pituitaria)" EXACT [FMA:74628, FMA:TA] synonym: "lobus posterior hypophysis" EXACT [FMA:74628, FMA:TA] synonym: "neural lobe" EXACT [FMA:74628] synonym: "neural lobe of pituitary" EXACT [NIF_GrossAnatomy:birnlex_1586] synonym: "neural lobe of pituitary gland" EXACT [FMA:74628] synonym: "neurohypophysis" EXACT [] synonym: "pituitary gland, posterior lobe" EXACT [] synonym: "posterior lobe of pituitary" EXACT [] synonym: "posterior lobe of pituitary gland" EXACT [FMA:74628] synonym: "posterior pituitary" EXACT [] synonym: "posterior pituitary gland" RELATED [BTO:0000937] xref: AAO:0010537 xref: BM:NY xref: BTO:0000937 xref: EHDAA:7536 xref: EHDAA2:0001271 xref: EMAPA:17519 xref: FMA:74628 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b9/Pituitary_gland_representation.PNG/200px-Pituitary_gland_representation.PNG xref: MA:0000178 xref: MESH:A.06.407.747.734 xref: ncithesaurus:Posterior_Lobe_of_the_Pituitary_Gland xref: NIF_GrossAnatomy:birnlex_1586 xref: OG:0000142 xref: SCTID:245527006 xref: TAO:0001271 xref: ZFA:0001271 is_a: UBERON:0000481 {source="ZFA"} ! multi-tissue structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: develops_from UBERON:0002346 ! neural ectoderm relationship: develops_from UBERON:0006250 {source="EHDAA2"} ! infundibular recess of 3rd ventricle relationship: part_of UBERON:0000007 {source="ZFA"} ! pituitary gland [Term] id: UBERON:0002199 name: integument alt_id: UBERON:FMA_74657-ZFA_0000368 def: "The dermis, epidermis and hypodermis." [Wikipedia:Integument] comment: in FMA intergument = skin+superficial fascia(hypodermis), skin=dermis+epidermis+hair_nail. Note that the definition provided here excludes the more general sense of the term 'integument' used in invertebrates subset: uberon_slim subset: vertebrate_core synonym: "dermal system" RELATED [BTO:0000634] synonym: "dermoid system" RELATED [BTO:0000634] synonym: "Hautsystem" RELATED [BTO:0000634] synonym: "integumentum commune" EXACT [FMA:74657, FMA:TA] synonym: "skin" RELATED [] synonym: "tegument" RELATED [BTO:0000634] synonym: "the integument" EXACT [FMA:74657] xref: AAO:0000239 xref: BTO:0000634 xref: EHDAA2:0001844 xref: FMA:74657 xref: galen:Integument xref: MESH:A.17.815 xref: TAO:0000368 xref: VAO:0000029 xref: ZFA:0000368 is_a: UBERON:0003102 ! surface structure relationship: has_part UBERON:0002072 ! hypodermis relationship: has_part UBERON:0002097 ! skin of body relationship: part_of UBERON:0002416 ! integumental system relationship: surrounds UBERON:0000468 ! multi-cellular organism [Term] id: UBERON:0002200 name: vasculature of head alt_id: UBERON:FMA_74710-ZFA_0001267 def: "A vasculature that is part of a head [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies subset: vertebrate_core synonym: "adult head vascular network" EXACT [OBOL:automatic] synonym: "adult head vasculature" EXACT [OBOL:automatic] synonym: "cranial vasculature" EXACT [] synonym: "head vascular network" EXACT [OBOL:automatic] synonym: "head vasculature" RELATED [] synonym: "vascular network of adult head" EXACT [OBOL:automatic] synonym: "vascular network of head" EXACT [OBOL:automatic] synonym: "vasculature of adult head" EXACT [OBOL:automatic] xref: EFO:0003656 xref: FMA:74710 xref: TAO:0001267 xref: XAO:0004152 xref: ZFA:0001267 is_a: UBERON:0002049 ! vasculature relationship: part_of UBERON:0000033 intersection_of: UBERON:0002049 ! vasculature intersection_of: part_of UBERON:0000033 ! head [Term] id: UBERON:0002201 name: vasculature of trunk alt_id: UBERON:FMA_74712-ZFA_0005024 def: "A vasculature that is part of a trunk [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies subset: vertebrate_core synonym: "torso vascular network" EXACT [OBOL:automatic] synonym: "torso vasculature" EXACT [OBOL:automatic] synonym: "trunk vascular network" EXACT [OBOL:automatic] synonym: "trunk vasculature" EXACT [] synonym: "vascular network of torso" EXACT [OBOL:automatic] synonym: "vascular network of trunk" EXACT [OBOL:automatic] synonym: "vasculature of torso" EXACT [OBOL:automatic] xref: FMA:74712 xref: TAO:0005024 xref: ZFA:0005024 is_a: UBERON:0002049 ! vasculature relationship: part_of UBERON:0002100 intersection_of: UBERON:0002049 ! vasculature intersection_of: part_of UBERON:0002100 ! trunk [Term] id: UBERON:0002202 name: submucosa of trachea alt_id: UBERON:FMA_7472-MA_0001860 comment: This class was created automatically from a combination of ontologies synonym: "submucosa of windpipe" EXACT [OBOL:automatic] synonym: "trachea submucosa" EXACT [] synonym: "tracheal submucosa" EXACT [] synonym: "windpipe submucosa" EXACT [OBOL:automatic] xref: BTO:0002115 xref: FMA:7472 xref: MA:0001860 xref: ncithesaurus:Trachea_Submucosa xref: SCTID:4419000 is_a: UBERON:0000009 ! submucosa is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004777 ! implied link automatically realized ! respiratory system submucosa relationship: part_of UBERON:0003126 intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0003126 ! trachea [Term] id: UBERON:0002203 name: vasculature of eye alt_id: UBERON:FMA_74743-ZFA_0007057 def: "A vasculature that is part of a eye [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies subset: vertebrate_core synonym: "eye vascular network" EXACT [OBOL:automatic] synonym: "eye vasculature" RELATED [] synonym: "ocular blood vessel" EXACT [ZFA:0007057] synonym: "ocular vasculature" EXACT [] synonym: "optic vasculature" RELATED [] synonym: "vascular network of eye" EXACT [OBOL:automatic] xref: FMA:74743 xref: SCTID:123846009 xref: ZFA:0007057 is_a: UBERON:0002200 ! vasculature of head is_a: UBERON:0006876 ! implied link automatically realized ! vasculature of organ relationship: part_of UBERON:0000019 intersection_of: UBERON:0002049 ! vasculature intersection_of: part_of UBERON:0000019 ! camera-type eye [Term] id: UBERON:0002204 name: musculoskeletal system alt_id: UBERON:FMA_7482-MA_0002418-XAO_0000168 def: "Anatomical system that provides locomotion and physical support to the organism." [Wikipedia:Musculoskeletal_system, XB:curator] subset: uberon_slim synonym: "musculo-skeletal system" EXACT [] xref: AAO:0010546 xref: EV:0100139 xref: FMA:7482 xref: GAID:98 xref: MA:0002418 xref: MESH:A.02 xref: ncithesaurus:Musculoskeletal_System xref: OG:0001275 xref: OpenCyc:Mx4rQRpVNgAKEdyHxgDggVfs8g xref: SCTID:278858007 xref: XAO:0000168 is_a: UBERON:0000467 ! anatomical system is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure disjoint_from: UBERON:0000949 ! endocrine system disjoint_from: UBERON:0000990 ! reproductive system disjoint_from: UBERON:0001004 ! respiratory system disjoint_from: UBERON:0001007 ! digestive system disjoint_from: UBERON:0001008 ! excretory system disjoint_from: UBERON:0001009 ! circulatory system disjoint_from: UBERON:0001016 ! nervous system disjoint_from: UBERON:0001033 ! gustatory system disjoint_from: UBERON:0001434 ! skeletal system disjoint_from: UBERON:0002294 ! biliary system disjoint_from: UBERON:0002330 ! exocrine system disjoint_from: UBERON:0002390 ! hematopoietic system disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system relationship: develops_from UBERON:0000926 ! mesoderm relationship: has_part UBERON:0000383 ! musculature of body [Term] id: UBERON:0002205 name: manubrium of sternum alt_id: UBERON:FMA_7486-ZFA_0001601 def: "broad, upper part of the sternum. Located ventrally with a quadrangular shape, wider superiorly and narrower inferiorly, it articulates with the clavicles and the first two ribs[WP]." [Wikipedia:Manubrium] comment: not to be confused with manubrium of eardrum. todo - find reference to support disjointness assertion with teleost subset: uberon_slim synonym: "manubrium" BROAD [] synonym: "manubrium of sternum" EXACT [] synonym: "manubrium sterni" EXACT [EMAPA:18723] synonym: "sternal manubrium" EXACT [MA:0001332] xref: AAO:0000680 xref: EMAPA:18723 xref: FMA:7486 xref: GAID:247 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/23/Gray116.png/200px-Gray116.png xref: MA:0001332 xref: MESH:A.02.835.232.904.766.442 xref: ncithesaurus:Sternal_Manubrium xref: OpenCyc:Mx4rvXOLAZwpEbGdrcN5Y29ycA xref: SCTID:182014008 is_a: UBERON:0004765 ! skeletal element is_a: UBERON:0005181 ! implied link automatically realized ! thoracic segment organ disjoint_from: UBERON:0006722 ! manubrium of malleus relationship: part_of UBERON:0000975 ! sternum [Term] id: UBERON:0002206 name: mammillary body alt_id: UBERON:FMA_74877-MA_0000174 def: "The mammilary body is a protrusion at the posterior end of the hypothalamus that contains hypothalamic nuclei[GO]." [Wikipedia:Mammillary_body] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "corpus mamillare" EXACT [ZFA:0000334] synonym: "mamillary body" EXACT [] xref: ABA:MBO xref: FMA:74877 xref: GAID:652 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/97/Gray1180.png/200px-Gray1180.png xref: MA:0000174 xref: MESH:A.08.186.211.730.385.357.362.500 xref: ncithesaurus:Mamillary_Body xref: NIF_GrossAnatomy:birnlex_865 xref: SCTID:279306001 xref: ZFA:0000334 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0000349 {source="GO"} ! limbic system relationship: part_of UBERON:0001894 ! diencephalon relationship: spatially_disjoint_from UBERON:0001935 {source="ABA"} ! ventromedial nucleus of hypothalamus relationship: spatially_disjoint_from UBERON:0002035 {source="ABA"} ! medial preoptic nucleus relationship: spatially_disjoint_from UBERON:0002634 {source="ABA"} ! anterior nucleus of hypothalamus relationship: spatially_disjoint_from UBERON:0002706 {source="ABA"} ! posterior nucleus of hypothalamus [Term] id: UBERON:0002207 name: xiphoid process alt_id: UBERON:FMA_7488-MA_0001884 def: "The xiphoid process, also known as the xiphisternum, is a small cartilaginous extension to the lower part of the sternum which is usually ossified in the adult human. By age 15 to 29, the xiphoid usually fuses to the body of the sternum with a fibrous joint. Unlike the synovial articulation of major joints, this is non-movable. Much the way the first seven ribs articulate with the sternum, the cartilage in the celiac plexus joins on the xiphoid process, reinforcing it, and indirectly attaches the costal cartilage to the sternum. [WP,unvetted]." [https://sourceforge.net/tracker/?func=detail&aid=3153001&group_id=76834&atid=1205376, Wikipedia:Xiphoid_process] comment: this class may represent a mixed bony-cartilage element, or it may be the superclass of either purely cartilage or purely ossified elements subset: uberon_slim synonym: "metasternum" RELATED [Wikipedia:Xiphoid_process] synonym: "processus xiphoideus" RELATED [Wikipedia:Xiphoid_process] synonym: "xiphisternum" EXACT [Wikipedia:Xiphoid_process] synonym: "xiphoid" RELATED [Wikipedia:Xiphoid_process] synonym: "xiphoid process" EXACT [FMA:7488] synonym: "xiphoid process" RELATED [Wikipedia:Xiphoid_process] synonym: "xiphoid process of sternum" EXACT [] synonym: "xiphoideus" RELATED [Wikipedia:Xiphoid_process] synonym: "xiphosternal junction" RELATED [Wikipedia:Xiphoid_process] synonym: "xyphoid" RELATED [Wikipedia:Xiphoid_process] xref: FMA:7488 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4d/Gray117.png/200px-Gray117.png xref: MA:0001334 xref: ncithesaurus:Xiphoid_Process xref: SCTID:272711000 is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:0000975 ! sternum [Term] id: UBERON:0002208 name: sternebra alt_id: UBERON:FMA_7489-MA_0001333 def: "one of the bony segments of the sternum[TFD]." [http://medical-dictionary.thefreedictionary.com/sternebra, Wikipedia:Sternebra] comment: Note that some definitions state that this a segment of the primordial sternum. We classify this under skeletal element, we are neutral as to whether these are bones or segments (fused bone) subset: uberon_slim synonym: "sternebral bone" RELATED [EMAPA:18724] xref: EMAPA:18724 xref: FMA:7489 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/12/Illu_thoracic_cage.jpg/200px-Illu_thoracic_cage.jpg xref: MA:0001333 xref: SCTID:95955004 is_a: UBERON:0004765 ! skeletal element is_a: UBERON:0005181 ! implied link automatically realized ! thoracic segment organ relationship: develops_from UBERON:0006295 ! sternebral bone pre-cartilage condensation relationship: part_of UBERON:0000975 {source="MA"} ! sternum [Term] id: UBERON:0002209 name: fibrous joint alt_id: UBERON:FMA_7492-MA_0000321 def: "Nonsynovial joint in which the articulating bones or cartilages are connected by ligaments. Examples: sagittal suture, inferior tibiofibular syndesmosis, gomphosis.[FMA]" [FMA:FMA, Wikipedia:Fibrous_joint] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "articulatio fibrosa" EXACT [] xref: AEO:0000178 xref: EHDAA2:0003178 xref: FMA:7492 xref: MA:0000321 xref: SCTID:37772004 xref: ZFA:0005156 is_a: UBERON:0000982 ! skeletal joint [Term] id: UBERON:0002210 name: syndesmosis alt_id: UBERON:FMA_7494-MA_0001500 def: "Fibrous joint in which the articulating bones or cartilages of the vertebral column and the limbs as well as articulating ossicles, are connected by skeletal ligaments or membranes. Examples: Intervertebral syndesmosis, inferior tibiofibular joint.[FMA]" [FMA:FMA, Wikipedia:Syndesmosis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:7494 xref: MA:0001500 xref: SCTID:89358004 is_a: UBERON:0002209 ! fibrous joint is_a: UBERON:0002213 ! cartilaginous joint [Term] id: UBERON:0002211 name: nerve root alt_id: UBERON:FMA_74941-ZFA_0001328 comment: we make nerve root continuous_with nerve to avoid inconsistencies with the spatial disjointness constraint between PNS and CNS, with nerves part_of CNS. FMA has segment of nerve with subtypes: segment of sympathetic trunk, nerve root, nerve rootlet, nerve root proper subset: uberon_slim xref: BTO:0000883 xref: FMA:5981 xref: ncithesaurus:Nerve_Root xref: SCTID:362295007 is_a: UBERON:0000063 ! organ segment relationship: continuous_with UBERON:0001021 ! nerve [Term] id: UBERON:0002212 name: macula of saccule of membranous labyrinth alt_id: UBERON:FMA_74944-MA_0001201 def: "The saccule is the smaller of the two vestibular sacs; it is globular in form, and lies in the recessus sphæricus near the opening of the scala vestibuli of the cochlea. Its anterior part exhibits an oval thickening, the macula of saccule (or saccular macula), to which are distributed the saccular filaments of the acoustic nerve. [WP,unvetted]." [Wikipedia:Macula_of_saccule] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "macula of membranous labyrinth saccule" EXACT [OBOL:automatic] synonym: "macula of saccule" EXACT [] synonym: "macula of sacculus (labyrinthus vestibularis)" EXACT [OBOL:automatic] synonym: "macula saccule" EXACT [ZFA:0007000] synonym: "macula sacculi" EXACT [FMA:74944, FMA:TA] synonym: "membranous labyrinth saccule macula" EXACT [OBOL:automatic] synonym: "saccular macula" EXACT [ZFA:0007000] synonym: "saccular macula of membranous labyrinth" EXACT [] synonym: "saccular maculs" RELATED [] synonym: "saccule macula" EXACT [OBOL:automatic] synonym: "saccule of membranous labyrinth macula" EXACT [OBOL:automatic] synonym: "sacculus (labyrinthus vestibularis) macula" EXACT [OBOL:automatic] xref: FMA:74944 xref: MA:0001201 xref: ncithesaurus:Macula_of_Saccule xref: SCTID:362572004 xref: XAO:0004136 xref: ZFA:0007000 is_a: UBERON:0000054 ! implied link automatically realized ! macula is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001854 intersection_of: UBERON:0000054 ! macula intersection_of: part_of UBERON:0001854 ! saccule of membranous labyrinth relationship: part_of UBERON:0001854 ! saccule of membranous labyrinth [Term] id: UBERON:0002213 name: cartilaginous joint alt_id: UBERON:FMA_7496-MA_0000320 def: "Nonsynovial joint in which the articulating bones or cartilages are connected by cartilage. Examples: Spheno-occipital synchondrosis, first sternocostal joint, pubic symphysis.[FMA]" [FMA:FMA, Wikipedia:Cartilaginous_joint] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "articulatio cartilaginea" EXACT [] xref: FMA:7496 xref: MA:0000320 xref: SCTID:58442004 xref: ZFA:0005155 is_a: UBERON:0000982 ! skeletal joint [Term] id: UBERON:0002214 name: macula of utricle of membranous labyrinth alt_id: UBERON:FMA_74960-MA_0001203 def: "The portion of the utricle which is lodged in the recess forms a sort of pouch or cul-de-sac, the floor and anterior wall of which are thickened, and form the macula of utricle (or utricular macula), which receives the utricular filaments of the vestibulocochlear nerve. [WP,unvetted]." [Wikipedia:Macula_of_utricle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "macula of membranous labyrinth utricle" EXACT [OBOL:automatic] synonym: "macula of utricle" EXACT [] synonym: "macula of utriculus (labyrinthus vestibularis)" EXACT [OBOL:automatic] synonym: "macula utricle" EXACT [ZFA:0000030] synonym: "macula utriculi" EXACT [FMA:74960, FMA:TA] synonym: "membranous labyrinth utricle macula" EXACT [OBOL:automatic] synonym: "utricle macula" EXACT [OBOL:automatic] synonym: "utricle of membranous labyrinth macula" EXACT [OBOL:automatic] synonym: "utricular macula" RELATED [] synonym: "utriculus (labyrinthus vestibularis) macula" EXACT [OBOL:automatic] xref: EFO:0003474 xref: FMA:74960 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Bigotolith.jpg/200px-Bigotolith.jpg xref: MA:0001203 xref: ncithesaurus:Macula_of_Utricle xref: SCTID:362568003 xref: ZFA:0000030 is_a: UBERON:0000054 ! macula is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001853 intersection_of: UBERON:0000054 ! macula intersection_of: part_of UBERON:0001853 ! utricle of membranous labyrinth relationship: part_of UBERON:0001853 ! utricle of membranous labyrinth [Term] id: UBERON:0002215 name: synchondrosis alt_id: UBERON:FMA_7497-MA_0001501 def: "Cartilaginous joint in which the articulating bones or cartilages are connected by hyaline cartilage. Examples: spheno-occipital synchondrosis, first sternocostal joint.[FMA]" [FMA:FMA, Wikipedia:Synchondrosis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "cartilago epiphysialis" EXACT [FMA:7497, FMA:TA] synonym: "epiphysial cartilage" EXACT [] synonym: "primary cartilaginous joint" EXACT [] xref: FMA:7497 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/76/Gray297.png/200px-Gray297.png xref: MA:0001501 xref: SCTID:42903008 is_a: UBERON:0002209 ! fibrous joint is_a: UBERON:0002213 ! cartilaginous joint [Term] id: UBERON:0002216 name: symphysis alt_id: UBERON:FMA_7498-MA_0001504 def: "Cartilaginous joint in which the articulating bones or cartilages are connected by fibrocartilage. Examples: pubic symphysis, intervertebral symphysis, manubriosternal joint.[FMA]" [FMA:FMA, Wikipedia:Symphysis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "secondary cartilaginous joint" EXACT [] xref: FMA:7498 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b1/Gray298.png/200px-Gray298.png xref: MA:0001504 xref: SCTID:1584001 is_a: UBERON:0002209 ! fibrous joint is_a: UBERON:0002213 ! cartilaginous joint [Term] id: UBERON:0002217 name: synovial joint alt_id: UBERON:FMA_7501-MA_0000322 def: "Joint in which the articulating bones or cartilages are connected by an articular capsule which encloses a synovial membrane and a synovial cavity. Examples: Temporomandibular joint, knee joint.[FMA]" [FMA:FMA, Wikipedia:Synovial_joint] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "articulatio synoviale" EXACT [] synonym: "diarthrodial joints" RELATED [ZFA:0005153] synonym: "diarthroses" EXACT [ZFA:0005153] xref: AEO:0000183 xref: EHDAA2:0003183 xref: FMA:7501 xref: galen:SynovialJoint xref: MA:0000322 xref: OpenCyc:Mx4rv2bBV5wpEbGdrcN5Y29ycA xref: SCTID:113234001 xref: ZFA:0005153 is_a: UBERON:0000982 ! skeletal joint [Term] id: UBERON:0002218 name: tympanic ring alt_id: UBERON:FMA_75053-MA_0001225 def: "the bony ring at the ear canal to which the tympanic membrane is attached." [MP:0000030] comment: This class was created automatically from a combination of ontologies xref: AAO:0000615 xref: EMAPA:19197 xref: FMA:75053 xref: MA:0001225 is_a: UBERON:0000466 ! immaterial anatomical entity relationship: part_of UBERON:0001756 ! middle ear relationship: part_of UBERON:0002204 ! musculoskeletal system [Term] id: UBERON:0002219 name: subfornical organ alt_id: UBERON:FMA_75260-MA_0000940 def: "The subfornical organ, situated on the ventral surface of the fornix, at the foramen of Monro, is one of the circumventricular organs of the brain. [WP,unvetted]." [Wikipedia:Subfornical_organ] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: ABA:SFO xref: FMA:75260 xref: GAID:795 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d7/Gray715.png/200px-Gray715.png xref: MA:0000940 xref: MESH:A.08.713.840 xref: NIF_GrossAnatomy:nlx_anat_100314 is_a: UBERON:0005408 ! circumventricular organ relationship: part_of UBERON:0001016 ! nervous system relationship: spatially_disjoint_from UBERON:0001934 {source="ABA"} ! dorsomedial nucleus of hypothalamus relationship: spatially_disjoint_from UBERON:0002034 {source="ABA"} ! suprachiasmatic nucleus relationship: spatially_disjoint_from UBERON:0002625 {source="ABA"} ! median preoptic nucleus relationship: spatially_disjoint_from UBERON:0002689 {source="ABA"} ! supraoptic crest relationship: spatially_disjoint_from UBERON:0002690 {source="ABA"} ! anteroventral periventricular nucleus relationship: spatially_disjoint_from UBERON:0007626 {source="ABA"} ! subparaventricular zone [Term] id: UBERON:0002221 name: fontanelle alt_id: UBERON:FMA_75438-MA_0001465 def: "Anatomical structure that is a membranous gap between bones of the skull[TAO]. In humans: Fontanelles are soft spots on a baby's head which, during birth, enable the bony plates of the skull to flex, allowing the child's head to pass through the birth canal. The ossification of the bones of the skull cause the fontanelles to close over by a child's second birthday. The closures eventually form the sutures of the neurocranium. Although there are the two anterior and posterior fontanelles, there are two more fontanelles of interest, the mastoid fontanelle, and the sphenoidal fontanelle[WP]." [Wikipedia:Fontanelle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "fontanel" EXACT [] xref: FMA:75438 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b3/Gray197.png/200px-Gray197.png xref: MA:0001465 xref: ncithesaurus:Fontanelle xref: TAO:0001738 xref: ZFA:0005536 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: adjacent_to UBERON:0003685 ! cranial suture relationship: part_of UBERON:0002241 ! chondrocranium [Term] id: UBERON:0002222 name: perichondrium alt_id: UBERON:FMA_75446-ZFA_0001634 def: "Fibrous connective tissue that surrounds cartilage." [https://github.com/cmungall/uberon/issues/26, VAO:0000036, Wikipedia:Perichondrium] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "cartilage connective tissue" RELATED [] synonym: "perichondral region of cartilage" RELATED [] synonym: "perichondral region of cartilage element" RELATED [] xref: AAO:0010445 xref: BTO:0005089 xref: FMA:75446 xref: MA:0003008 xref: SCTID:11881003 xref: TAO:0001643 xref: VAO:0000036 xref: XAO:0004049 xref: ZFA:0001634 is_a: UBERON:0002384 ! connective tissue relationship: surrounds UBERON:0002418 ! cartilage tissue [Term] id: UBERON:0002223 name: endolymphatic sac alt_id: UBERON:FMA_75639-MA_0001188 def: "From the posterior wall of the saccule a canal, the ductus endolymphaticus, is given off; this duct is joined by the ductus utriculosaccularis, and then passes along the aquaeductus vestibuli and ends in a blind pouch, the endolymphatic sac, on the posterior surface of the petrous portion of the temporal bone, where it is in contact with the dura mater. Studies suggest that the endolymphatic duct and endolymphatic sac perform both absorptive and secretory, as well as phagocytic and immunodefensive,functions . [WP,unvetted]." [Wikipedia:Endolymphatic_sac] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: EHDAA:7761 xref: EHDAA2:0000441 xref: EMAPA:17593 xref: FMA:75639 xref: GAID:887 xref: MA:0001188 xref: MESH:A.09.246.631.909.957.360.701 xref: OG:0000791 xref: SCTID:279810008 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002049 ! vasculature [Term] id: UBERON:0002224 name: thoracic cavity alt_id: UBERON:FMA_7565-MA_0000032 def: "Body cavity subdivision which is enclosed by the thoracic wall and the diaphragm[FMA]." [FMA:7565, Wikipedia:Thoracic_cavity] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "cavity of chest" EXACT [] synonym: "cavity of thorax" EXACT [] synonym: "chest cavity" EXACT [] synonym: "pectoral cavity" EXACT [] synonym: "space of thoracic compartment" EXACT [FMA:7565] xref: FMA:7565 xref: GAID:93 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/Scheme_body_cavities-en.svg/200px-Scheme_body_cavities-en.svg.png xref: MA:0000032 xref: MESH:A.01.911.800 xref: ncithesaurus:Thoracic_Cavity xref: OpenCyc:Mx4rmvyleLfEEduAAAACs6hRXg xref: OpenCyc:Mx4rvhU_TpwpEbGdrcN5Y29ycA xref: SCTID:243949006 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0000915 ! thoracic segment of trunk [Term] id: UBERON:0002225 name: costal arch alt_id: UBERON:FMA_7569-MA_0001396 def: "The costal margin, sometimes referred to as the costal arch, is the medial margin formed by the false ribs -- specifically, from the eighth rib to the tenth rib." [Wikipedia:Costal_margin] comment: todo - split? check part_of relationship synonym: "arcus costae" RELATED [Wikipedia:Costal_margin] synonym: "costal margin" RELATED [Wikipedia:Costal_margin] synonym: "subcostal arch" RELATED [Wikipedia:Costal_margin] xref: FMA:7569 xref: FMA:7570 xref: MA:0001396 xref: ncithesaurus:Costal_Arch xref: SCTID:367767002 is_a: UBERON:0006800 {source="FMA"} ! anatomical line relationship: part_of UBERON:0002228 {source="MA"} ! rib [Term] id: UBERON:0002226 name: basilar membrane of cochlea alt_id: UBERON:FMA_75706-MA_0001190 def: "a stiff structural element that separates two liquid-filled tubes that run along the coil of the cochlea, the scala media and the scala tympani[WP]." [Wikipedia:Basilar_membrane] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "basilar membrane" EXACT [] xref: FMA:75706 xref: GAID:872 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9b/Organ_of_corti.svg/200px-Organ_of_corti.svg.png xref: MA:0001190 xref: MESH:A.09.246.631.246.125 xref: ncithesaurus:Basilar_Membrane xref: NIF_GrossAnatomy:birnlex_2521 xref: SCTID:362574003 is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0005764 ! acellular membrane relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth [Term] id: UBERON:0002227 name: spiral organ of cochlea alt_id: UBERON:FMA_75715-MA_0001193 def: "The organ of Corti (or spiral organ) is the organ in the inner ear of mammals that contains auditory sensory cells, or 'hair cells.' [WP,unvetted]." [Wikipedia:Organ_of_Corti] comment: Todo - check XAO, taxon constraints subset: uberon_slim synonym: "basilar papilla" RELATED [BTO:0001691] synonym: "cochlear spiral organ" EXACT [] synonym: "Corti's organ" RELATED [BTO:0001691] synonym: "organ of corti" RELATED [] synonym: "organum spirale" RELATED [BTO:0001691] synonym: "spiral organ" EXACT [] synonym: "spiral organ of corti" EXACT [] xref: AAO:0011018 xref: BTO:0001691 xref: EFO:0001364 xref: EMAPA:19061 xref: EMAPA:19151 xref: EV:0100364 xref: FMA:75715 xref: GAID:772 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c7/Cochlea-crosssection.png/200px-Cochlea-crosssection.png xref: MA:0001193 xref: ncithesaurus:Organ_of_Corti xref: NIF_GrossAnatomy:birnlex_2526 xref: XAO:0003145 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth [Term] id: UBERON:0002228 name: rib alt_id: UBERON:FMA_7574-MA_0000315-ZFA_0000538 def: "An intersegmental rod-shaped bone that forms in the peritoneal membrane and attach to the vertebral parapophyses. They protect and support internal organs. In most vertebrates, ribs surround the chest. they enable lungs to expand by expanding the chest, they also protect the lungs, heart, and other internal organs of the thorax. In some animals, especially snakes, ribs may provide support and protection for the entire body." [Wikipedia:Rib, ZFIN:curator] comment: Humans have 24 ribs (12 pairs). The first seven sets of ribs, known as "true ribs", are directly attached to the sternum through the costal cartilage. The following five sets are known as "false ribs", three of these sharing a common cartilaginous connection to the sternum, while the last two (eleventh and twelfth ribs) are termed floating ribs (costae fluitantes) or vertebral ribs. They are attached to the vertebrae only, and not to the sternum or cartilage coming off of the sternum. Some people are missing one of the two pairs of floating ribs, while others have a third pair. Rib removal is the surgical excision of ribs for therapeutic or cosmetic reasons. In fish, there are often two sets of ribs attached to the vertebral column. One set, the dorsal ribs, are found in the dividing septum between the upper and lower parts of the main muscle segments, projecting roughly sideways from the vertebral column. The second set, of ventral ribs arise from the vertebral column just below the dorsal ribs, and enclose the lower body, often joining at the tips. Not all species possess both types of rib, with the dorsal ribs being most commonly absent. Sharks, for example, have no dorsal ribs, and only very short ventral ribs, while lampreys have no ribs at all. In some teleosts, there may be additional rib-like bones within the muscle mass. Tetrapods, however, only ever have a single set of ribs which are probably homologous with the dorsal ribs of fishes. In the early tetrapods, every vertebra bore a pair of ribs, although those on the thoracic vertebrae are typically the longest. The sacral ribs were stout and short, since they formed part of the pelvis, connecting the backbone to the hip bones.[1] In most subsequent forms, many of these early ribs have been lost, and in living amphibians and reptiles, there is great variation in rib structure and number. For example, turtles have only eight pairs of ribs, which are developed into a bony or cartilagenous carapace and plastron, while snakes have numerous ribs running along the full length of their trunk. Frogs typically have no ribs, aside from a sacral pair, which form part of the pelvis.[1]. In birds, ribs are present as distinct bones only on the thoracic region, although small fused ribs are present on the cervical vertebrae. The thoracic ribs of birds possess a wide projection to the rear; this uncinate process is an attachment for the shoulder muscles.[1]. Mammals usually also only have distinct ribs on the thoracic vertebra, although fixed cervical ribs are also present in monotremes. In marsupials and placental mammals, the cervical and lumbar ribs are found only as tiny remnants fused to the vertebrae, where they are referred to as transverse processes. In general, the structure and number of the true ribs in humans is similar to that in other mammals. Unlike reptiles, caudal ribs are never found in mammals.[1] subset: uberon_slim subset: vertebrate_core synonym: "dorsal rib" RELATED [] synonym: "pleural rib" RELATED [] xref: AAO:0000545 xref: EFO:0003066 xref: EMAPA:18010 xref: FMA:7574 xref: GAID:245 xref: galen:Rib xref: MA:0000315 xref: MESH:A.02.835.232.904.567 xref: ncithesaurus:Rib xref: OG:0001154 xref: OpenCyc:Mx4rvVjNoZwpEbGdrcN5Y29ycA xref: SCTID:302523002 xref: TAO:0000538 xref: ZFA:0000538 is_a: UBERON:0002495 ! long bone is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0003459 ! implied link automatically realized ! chest bone is_a: UBERON:0004247 ! implied link automatically realized ! back bone relationship: part_of UBERON:0001443 ! chest relationship: part_of UBERON:0002091 ! appendicular skeleton relationship: part_of UBERON:0002412 ! vertebra [Term] id: UBERON:0002229 name: interparietal bone alt_id: UBERON:FMA_75748-MA_0001467 def: "the bone of the cranium that lies above and anterior to the occipital bone in some mammals." [MP:0000077] comment: This class was created automatically from a combination of ontologies synonym: "inter-parietal bone" EXACT [EMAPA:19017] synonym: "interparietal" EXACT [EHDAA:9530] synonym: "post-parietal bone" RELATED [OG:0001327] synonym: "postparietal" RELATED [OG:0001327] synonym: "postparietal bone" RELATED [OG:0001327] xref: EHDAA:9530 xref: EMAPA:19017 xref: FMA:75748 xref: MA:0001467 xref: OG:0001327 xref: SCTID:369438005 is_a: UBERON:0001474 ! bone is_a: UBERON:0004766 ! implied link automatically realized ! cranial bone relationship: part_of UBERON:0003128 ! cranium [Term] id: UBERON:0002230 name: head of rib alt_id: UBERON:FMA_7575-MA_0001415 def: "The head of the rib is the end of a rib closest to the vertebral column, with which it articulates with. It is marked by a kidney-shaped articular surface, divided by a horizontal crest into two facets for articulation with the depression formed on the bodies of two adjacent thoracic vertebrae; the upper facet is the smaller; to the crest is attached the interarticular ligament. [WP,unvetted]." [Wikipedia:Head_of_rib] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "rib head" EXACT [] xref: FMA:7575 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5c/Gray122.png/200px-Gray122.png xref: MA:0001415 xref: ncithesaurus:Rib_Head xref: SCTID:263358001 is_a: UBERON:0005055 ! implied link automatically realized ! zone of long bone is_a: UBERON:0005174 ! implied link automatically realized ! back organ is_a: UBERON:0005175 ! implied link automatically realized ! chest organ is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0002228 ! rib [Term] id: UBERON:0002231 name: body of rib alt_id: UBERON:FMA_7577-MA_0001416 comment: This class was created automatically from a combination of ontologies synonym: "rib body" EXACT [] synonym: "rib shaft" EXACT [] synonym: "shaft of rib" EXACT [] xref: FMA:7577 xref: MA:0001416 xref: ncithesaurus:Rib_Shaft xref: SCTID:263361000 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0002228 ! rib [Term] id: UBERON:0002232 name: olfactory gland alt_id: UBERON:FMA_75801-MA_0000287 def: "Bowman's glands (aka olfactory glands, glands of Bowman) are situated in the olfactory mucosa, beneath the olfactory epithelium, in the lamina propria, a connective tissue also containing fibroblasts, blood vessels, and bundles of fine axons from the olfactory neurons. The structure of the Bowman's glands consists of an acinus in the lamina propria and a secretory duct going out through the olfactory epithelium. Electron microscopy studies show that Bowman's glands contain cells with large secretory vesicles.[2] Bowman's glands might secrete proteins such as Lysozyme, amylase and IgA similarly to serous glands. The exact composition of the secretions from Bowman's glands is unclear, but there is evidence that Bowman's glands do not produce odorant binding protein[WP]." [Wikipedia:Olfactory_glands] subset: organ_slim synonym: "Bowman's gland" RELATED [] synonym: "olfactory gland of Bowman" EXACT [] xref: AAO:0010162 xref: BTO:0001697 xref: FMA:75801 xref: MA:0000287 xref: SCTID:368891001 is_a: UBERON:0002530 ! gland is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001997 ! olfactory epithelium [Term] id: UBERON:0002233 name: tectorial membrane of cochlea alt_id: UBERON:FMA_75805-MA_0001199 def: "." [Wikipedia:Tectorial_membrane] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "tectorial membrane" EXACT [] synonym: "tectorial membrane of spiral organ of cochlea" EXACT [] xref: FMA:75805 xref: GAID:876 xref: MA:0001199 xref: MESH:A.09.246.631.246.292.906 xref: ncithesaurus:Tectorial_Membrane xref: NIF_GrossAnatomy:birnlex_2531 xref: SCTID:368960006 is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0005764 ! acellular membrane relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth [Term] id: UBERON:0002234 name: proximal phalanx of finger alt_id: UBERON:FMA_75816-MA_0001395 def: "A proximal phalanx that is part of a finger [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "hand proximal phalanx" EXACT [MA:0001395] synonym: "proximal phalanx of hand" EXACT [] xref: FMA:75816 xref: MA:0001395 xref: ncithesaurus:Proximal_Phalanx_of_Hand xref: SCTID:181986000 is_a: UBERON:0001436 ! phalanx of finger is_a: UBERON:0004302 ! implied link automatically realized ! proximal phalanx relationship: part_of UBERON:0002389 intersection_of: UBERON:0004302 ! proximal phalanx intersection_of: part_of UBERON:0002389 ! hand digit [Term] id: UBERON:0002235 name: tubercle of rib alt_id: UBERON:FMA_7583-MA_0001417 def: "The tubercle of a rib is an eminence on the posterior surface, at the junction of the neck and body of the rib, and nearer the lower than the upper border. It consists of an articular and a non-articular portion. The articular portion, the lower and more medial of the two, presents a small, oval surface for articulation with the end of the transverse process of the lower of the two vertebrae to which the head is connected. The non-articular portion is a rough elevation, and affords attachment to the ligament of the tubercle. The tubercle is much more prominent in the upper than in the lower ribs[WP]." [Wikipedia:Tubercle_(rib)] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "rib tubercle" EXACT [] xref: FMA:7583 xref: MA:0001417 xref: ncithesaurus:Rib_Tubercle xref: SCTID:361104005 is_a: UBERON:0004530 ! implied link automatically realized ! bony projection is_a: UBERON:0005813 ! implied link automatically realized ! tubercle relationship: part_of UBERON:0002231 intersection_of: UBERON:0005813 ! tubercle intersection_of: part_of UBERON:0002231 ! body of rib [Term] id: UBERON:0002236 name: costal cartilage alt_id: UBERON:FMA_7591-MA_0000106 def: "The costal cartilages are bars of hyaline cartilage which serve to prolong the ribs forward and contribute very materially to the elasticity of the walls of the thorax. [WP,unvetted]." [Wikipedia:Costal_cartilage] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:7591 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cc/Gray315.png/200px-Gray315.png xref: MA:0000106 xref: ncithesaurus:Costal_Cartilage xref: OpenCyc:Mx4rwP1g3pwpEbGdrcN5Y29ycA xref: SCTID:244703004 is_a: UBERON:0002418 ! cartilage tissue is_a: UBERON:0003572 ! implied link automatically realized ! chest connective tissue is_a: UBERON:0004267 ! implied link automatically realized ! back connective tissue relationship: part_of UBERON:0002228 ! rib [Term] id: UBERON:0002237 name: true rib alt_id: UBERON:FMA_7592-MA_0001419 def: "The first seven ribs are connected behind with the vertebral column, and in front, through the intervention of the costal cartilages, with the sternum; they are called true ribs or vertebro-sternal ribs. False ribs are interconnected membranous structures that are connected with the sternum process. [WP,unvetted]." [Wikipedia:True_ribs] comment: This class was created automatically from a combination of ontologies synonym: "costa vera" EXACT [] synonym: "costae verae" RELATED PLURAL [Wikipedia:True_ribs] xref: FMA:7592 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3d/Gray115.png/200px-Gray115.png xref: MA:0001419 xref: OpenCyc:Mx4rv4-iWJwpEbGdrcN5Y29ycA xref: SCTID:368044009 is_a: UBERON:0002228 ! rib [Term] id: UBERON:0002238 name: false rib alt_id: UBERON:FMA_7594-MA_0001398 def: "The false ribs are the five sets of ribs below the top seven true ribs. Of these: the first three (eighth, ninth, and tenth rib) have their cartilages attached to the cartilage of the rib above (vertebro-chondral): the last two are free at their anterior extremities and are termed floating ribs or vertebral ribs. [WP,unvetted]." [Wikipedia:False_rib] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "asternal ribs" RELATED [Wikipedia:False_ribs] synonym: "costa spuria" EXACT [] synonym: "costae spuriae" RELATED PLURAL [Wikipedia:False_ribs] xref: FMA:7594 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3d/Gray115.png/200px-Gray115.png xref: MA:0001398 xref: OpenCyc:Mx4rwLzzTZwpEbGdrcN5Y29ycA xref: SCTID:368045005 is_a: UBERON:0002228 ! rib [Term] id: UBERON:0002239 name: floating rib alt_id: UBERON:FMA_7595-MA_0001399 def: "Floating ribs are four atypical ribs (two lowermost pairs, XI-XII) in the human ribcage. They are called so because they are attached to the vertebrae only, and not to the sternum or cartilage coming off of the sternum. Some people are missing one of the two pairs. Others have a third pair. Most, however, possess only two pairs. Their position can be permanently altered by a form of body modification called tightlacing, which uses a corset to compress and move the ribs. [WP,unvetted]." [Wikipedia:Floating_rib] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "costa fluitante" EXACT [] xref: FMA:7595 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f7/Skeleton_woman_back.png/200px-Skeleton_woman_back.png xref: MA:0001399 xref: OpenCyc:Mx4rvaPCWZwpEbGdrcN5Y29ycA xref: SCTID:368046006 is_a: UBERON:0002238 ! false rib [Term] id: UBERON:0002240 name: spinal cord alt_id: UBERON:FMA_7647-MA_0000216-MIAA_0000183-XAO_0000020-ZFA_0000075 def: "Elongated, approximately cylindrical part of the central nervous system that lies in the vertebral canal and from which the spinal nerves emerge." [OMD:spinal+cord, Wikipedia:Spinal_cord] comment: TODO: add superclass to unify with VNC? subset: major_organ subset: organ_slim subset: uberon_slim subset: vertebrate_core synonym: "medulla spinalis" RELATED [BTO:0001279] synonym: "spinal cord structure" RELATED [ZFA:0000075] synonym: "spinal medulla" RELATED [BTO:0001279] xref: AAO:0010151 xref: BM:SpC xref: BTO:0001279 xref: EFO:0000110 xref: EHDAA:2863 xref: EHDAA2:0001891 xref: EMAPA:17577 xref: EMAPA:17700 xref: EV:0100316 xref: FMA:7647 xref: GAID:695 xref: MA:0000216 xref: MAT:0000183 xref: MESH:A.08.186.854 xref: MIAA:0000183 xref: ncithesaurus:Spinal_Cord xref: NIF_GrossAnatomy:birnlex_1709 xref: OG:0000601 xref: OpenCyc:Mx4rvVjjk5wpEbGdrcN5Y29ycA xref: SCTID:180959008 xref: TAO:0000075 xref: XAO:0000020 xref: ZFA:0000075 is_a: UBERON:0000489 ! cavitated compound organ is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0005174 ! implied link automatically realized ! back organ relationship: develops_from UBERON:0003076 ! posterior neural tube relationship: part_of UBERON:0001017 ! central nervous system relationship: part_of UBERON:0001137 ! back relationship: spatially_disjoint_from UBERON:0000955 ! brain [Term] id: UBERON:0002241 name: chondrocranium alt_id: UBERON:FMA_76621-XAO_0003059-ZFA_0001424 def: "Anatomical cluster that is part of the cranium and composed entirely of either cartilage, cartilage replacement bones or a mixture of both[ZFA]. that part of the neurocranium formed by endochondral ossification and comprising the bones of the base of the skull[TFD]." [http://medical-dictionary.thefreedictionary.com/chondrocranium, ZFA:0001424] comment: note the definition here specifically mentions cartilage or cartilage replacement bones. This means what MA calls 'chondrocranium' must in fact be neurocranium, as it includes membrane bones subset: vertebrate_core synonym: "calvarium" RELATED [MA:0000317] synonym: "neurocranium" RELATED INCONSISTENT [MA:0000317] xref: AAO:0010169 xref: EHDAA2:0000243 xref: EMAPA:17681 xref: OG:0000288 xref: TAO:0001424 xref: ZFA:0001424 is_a: UBERON:0000032 ! implied link automatically realized ! cranial structure is_a: UBERON:0004765 ! skeletal element relationship: part_of UBERON:0001703 ! neurocranium [Term] id: UBERON:0002242 name: nucleus pulposus alt_id: UBERON:FMA_76703-MA_0000112 def: "a jelly-like connective tissue in the middle of the spinal disc. It is the remnant of the notochord. It functions to distribute hydraulic pressure in all directions within each disc under compressive loads. The nucleus pulposus consists of chondrocytes, collagen fibrils, and proteoglycan aggrecans that have hyaluronic long chains which attract water. Attached to each hyaluronic chain are side chains of chondroitin sulfate and keratan sulfate[WP]." [Wikipedia:Nucleus_pulposus] subset: uberon_slim synonym: "nucleus propulsus" RELATED [Wikipedia:Nucleus_pulposus] synonym: "pulpy nucleus" EXACT [] xref: BTO:0003626 xref: FMA:76703 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d9/Cervical_vertebra_english.png/200px-Cervical_vertebra_english.png xref: MA:0000112 is_a: UBERON:0002384 ! connective tissue is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: develops_from UBERON:0002328 {source="Wikipedia"} ! notochord relationship: surrounded_by UBERON:0001066 ! intervertebral disk [Term] id: UBERON:0002243 name: cutaneous vein alt_id: UBERON:FMA_76720-MA_0002098 comment: This class was created automatically from a combination of ontologies xref: FMA:76720 xref: MA:0002098 xref: ncithesaurus:Cutaneous_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0002244 name: premaxilla alt_id: UBERON:FMA_76869-MA_0001493-ZFA_0000567 def: "The premaxilla is a bone of the upper jaw. It is an L-shaped bone first visible as a thin sliver in the anterodorsal region of the upper lip, anterior to the dorsal tip of the maxilla (5.7 mm). In the adult, the premaxilla is ligamentously attached to its counterpart at the midline and the kinethmoid posterodorsally, by the premaxillo-rostroid ligaments. Premaxillary teeth are absent in zebrafish[ZFA]. the embryonic bone that later fuses with the maxilla to form the incisive bone OR the embryonic structure that forms the anterior part of the maxillae.[TFD]." [http://medical-dictionary.thefreedictionary.com/premaxilla, Wikipedia:Premaxilla, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "premaxillae" EXACT PLURAL [] xref: AAO:0000461 xref: EHDAA:6962 xref: EHDAA:8033 xref: EHDAA2:0001496 xref: EMAPA:17641 xref: EMAPA:17933 xref: EMAPA:19033 xref: FMA:76869 xref: MA:0001493 xref: OG:0000426 xref: TAO:0000567 xref: ZFA:0000567 is_a: UBERON:0002514 ! intramembranous bone is_a: UBERON:0003462 ! implied link automatically realized ! viscerocranium bone relationship: develops_from UBERON:0004068 ! medial nasal prominence relationship: part_of UBERON:0002397 ! maxilla [Term] id: UBERON:0002245 name: hemisphere of cerebellum alt_id: UBERON:FMA_76925-MA_0000200 def: "The cerebellum consists of three parts, a median and two lateral, which are continuous with each other, and are substantially the same in structure. The median portion is constricted, and is called the vermis, from its annulated appearance which it owes to the transverse ridges and furrows upon it; the lateral expanded portions are named the hemispheres. The lateral hemisphere is considered the portion of the cerebellum to develop most recently. [WP,unvetted]." [Wikipedia:Cerebellar_hemisphere] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "cerebellar hemisphere" EXACT [] synonym: "cerebellum hemisphere" EXACT [] synonym: "Hemisphere of cerebellum [H II - H X]" EXACT [] synonym: "hemispherium cerebelli [h ii - h x]" EXACT [FMA:76925, FMA:TA] xref: ABA:HEM xref: FMA:76925 xref: MA:0000200 xref: ncithesaurus:Hemisphere_of_the_Cerebellum xref: NIF_GrossAnatomy:birnlex_1575 xref: SCTID:362411002 is_a: UBERON:0002749 ! implied link automatically realized ! regional part of cerebellar cortex is_a: UBERON:0002946 ! regional part of cerebellum relationship: part_of UBERON:0002129 ! cerebellar cortex [Term] id: UBERON:0002246 name: dorsal thoracic nucleus alt_id: UBERON:FMA_77023-MA_0001121 def: "." [Wikipedia:Clarke's_column] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Clarke's column" EXACT [] synonym: "Clarke's nucleus" EXACT [] synonym: "nucleus thoracicus posterior" EXACT [FMA:77023, FMA:TA] synonym: "posterior thoracic nucleus" EXACT [] synonym: "spinal cord dorsal nucleus" EXACT [] synonym: "Stilling-Clarke's column" EXACT [] synonym: "Stilling-Clarke's nucleus" EXACT [] xref: FMA:77023 xref: MA:0001121 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0002256 ! dorsal horn of spinal cord [Term] id: UBERON:0002247 name: uterine horn alt_id: UBERON:FMA_77053-MA_0000393 def: "The uterine horns are the points where the uterus and the uterine tubes meet. It is one of the points of attachment for the round ligament of uterus (the other being the mons pubis). The uterine horns are far more prominent in other animals than they are in humans[WP,unvetted]." [Wikipedia:Uterine_horn] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: BTO:0004235 xref: EFO:0000975 xref: EMAPA:18985 xref: FMA:77053 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/27/Illu_female_pelvis.jpg/200px-Illu_female_pelvis.jpg xref: MA:0000393 xref: SCTID:245480007 is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0000995 ! uterus [Term] id: UBERON:0002248 name: transverse pericardial sinus alt_id: UBERON:FMA_77132-MA_0001880 def: "There are two Pericardial sinuses: transverse and oblique. The cul-de-sac enclosed between the limbs of the inverted U of the venous mesocardium lies behind the left atrium and is known as the oblique sinus. . The passage between the venous and arterial mesocardia—i.e. , between the aorta and pulmonary artery in front and the superior vena cava behind—is termed the transverse sinus. Also, the sinus that forms in the pericardial cavity where the dorso-mesentary pericardium reside. Can be used to pass ligature during cardiac surgery. [WP,unvetted]." [Wikipedia:Transverse_pericardial_sinus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Thiele's canal" EXACT [] synonym: "transverse sinus of pericardial cavity" EXACT [] xref: EHDAA:796 xref: EHDAA2:0002077 xref: EMAPA:16214 xref: FMA:77132 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Gray489.png/200px-Gray489.png xref: MA:0001880 is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0005601 ! dorsal mesocardium [Term] id: UBERON:0002249 name: median artery alt_id: UBERON:FMA_77142-MA_0001999 comment: This class was created automatically from a combination of ontologies xref: FMA:77142 xref: MA:0001999 xref: ncithesaurus:Median_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0002250 name: popliteal artery alt_id: UBERON:FMA_77155-MA_0002021 def: "In human anatomy, the popliteal artery is defined as the extension of the 'superficial' femoral artery after passing through the adductor canal and adductor hiatus above the knee. The termination of the popliteal artery is its bifurcation into the anterior tibial artery and posterior tibial artery. The popliteal artery, through numerous smaller branches, supplies blood to the knee joint and muscles in the thigh and calf. It is accompanied, along its length, by the popliteal vein. [WP,unvetted]." [Wikipedia:Popliteal_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:77155 xref: GAID:504 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a2/Popliteal_artery.png/200px-Popliteal_artery.png xref: MA:0002021 xref: MESH:A.07.231.114.681 xref: ncithesaurus:Popliteal_Artery xref: OpenCyc:Mx4rvduV6pwpEbGdrcN5Y29ycA xref: SCTID:181350008 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0002251 name: iliocostalis alt_id: UBERON:FMA_77177-MA_0002319 def: "The iliocostalis is the muscle immediately lateral to the longissimus that is the nearest to the furrow that separates the epaxial muscles from the hypaxial. It lies very deep to the fleshy portion of the serratus ventralis (serratus anterior). [WP,unvetted]." [Wikipedia:Iliocostalis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:77177 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/89/Iliostalis.png/200px-Iliostalis.png xref: MA:0002319 is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0002252 name: splenius alt_id: UBERON:FMA_77180-MA_0002382 def: "." [Wikipedia:Splenius] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:77180 xref: MA:0002382 xref: ncithesaurus:Splenius is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0002253 name: incisive bone alt_id: UBERON:FMA_77231-MA_0001485 def: "The incisive bone is the portion of the maxilla adjacent to the incisors. It is a pair of small cranial bones at the very tip of the jaws of many animals, usually bearing teeth, but not always. They are connected to the maxilla and the nasals. The term premaxilla can also be used to refer to the incisive bone. [WP,unvetted]." [Wikipedia:Incisive_bone] comment: MA:0001485 was originally a distinct class 'incisive bone', now merged into MA:0001493 'premaxilla'. This is a general anatomical term in FMA. Here we treat it as an adult structure that develops from the embryonic premaxilla subset: uberon_slim synonym: "premaxilla" RELATED [MA:0001493, Wikipedia:Incisive_bone] xref: FMA:77231 is_a: UBERON:0002514 ! intramembranous bone is_a: UBERON:0003462 ! implied link automatically realized ! viscerocranium bone relationship: develops_from UBERON:0002244 ! premaxilla relationship: part_of UBERON:0002397 ! maxilla [Term] id: UBERON:0002254 name: thyroglossal duct alt_id: UBERON:FMA_77274-MA_0000130 def: "The thyroglossal duct is an embryological anatomical structure forming an open connection between the initial area of development of the thyroid gland and its final position. The thyroid gland starts developing in the oropharynx in the fetus and descends to its final position taking a path through the tongue, hyoid bone and neck muscles. The connection between its original position and its final position is the thyroglossal duct. This duct normally atrophies and closes off before birth but can remain open in some people. [WP,unvetted]." [Wikipedia:Thyroglossal_duct] comment: FMA treats this as vestigial subset: uberon_slim xref: EMAPA:17070 xref: EMAPA:18833 xref: FMA:77274 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fd/Illu08_thyroid.jpg/200px-Illu08_thyroid.jpg xref: MA:0000130 xref: ncithesaurus:Thyroglossal_Duct xref: OG:0000746 xref: SCTID:308822005 is_a: UBERON:0000058 ! duct is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure is_a: UBERON:0006590 ! vestigial embryonic structure relationship: part_of UBERON:0002046 ! thyroid gland [Term] id: UBERON:0002255 name: vomeronasal organ alt_id: UBERON:FMA_77280-MA_0000289 def: "The vomeronasal organ (VNO), or Jacobson's organ, is an auxiliary olfactory sense organ that is found in many animals. It was discovered by Ludwig Jacobson in 1813. During embryological development, it forms from the nasal (olfactory) placode, at the anterior edge of the neural plate. It is a chemoreceptor organ which is completely separated from the nasal cavity the majority of the time, being enclosed in a separate bony or cartilaginous capsule which opens into the base of the nasal cavity. It is a tubular crescent shape and split into two pairs, separated by the nasal septum. It is the first processing stage of the accessory olfactory system, after which chemical stimuli go to the accessory olfactory bulb, then to targets in the amygdala and hypothalamus. The vomeronasal organ is mainly used to detect pheromones, chemical messengers that carry information between individuals of the same species, hence is sometimes referred to as the 'sixth sense. ' The VNO has two separate types of neuronal receptors, V1R and V2R, which are seven-transmembrane receptors that are coupled to G proteins. The receptors are distinct from each other and form the large family of receptors in the main olfactory system. Evidence shows that the VNO responds to nonvolatile cues which stimulate the receptor neurons. Information is then transferred to the accessory olfactory bulb as well as other centres of the brain such as the anterior part of the hypothalamus. Its presence in many animals has been widely studied and the importance of the vomeronasal system to the role of reproduction and social behavior (through influence on anterior hypothalamus) has been shown in many studies. Its presence and functionality in humans is widely controversial, though most studies agree the organ regresses during fetal development. [WP,unvetted]." [Wikipedia:Vomeronasal_organ] comment: Taxon notes: Generally formed only in tetrapods; lungfish have rudimentary VN organs; true VN organs are not normally found in recent fishes, birds, aquatic reptiles, aquatic mammals (Bertmar 1980). Humans: Its presence in many animals has been widely studied and the importance of the vomeronasal system to the role of reproduction and social behavior (through influence on anterior hypothalamus) has been shown in many studies. Its presence and functionality in humans was controversial, though most studies agree the organ regresses during fetal development. Many genes essential for VNO function in animals (such as TRPC2) are non-functional in humans (Liman ER. Use it or lose it: molecular evolution of sensory signaling in primates. Pflugers Arch. 2006;453(2):125-31.) subset: organ_slim subset: uberon_slim synonym: "Jacobson's organ" EXACT [] synonym: "organ of Jacobsen" RELATED [] synonym: "organum vomeronasale" EXACT [BTO:0002608] xref: AAO:0000997 xref: BTO:0002608 xref: EFO:0001934 xref: EHDAA:7865 xref: EHDAA2:0002211 xref: EMAPA:17612 xref: FMA:77280 xref: GAID:354 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Gray51.png/200px-Gray51.png xref: MA:0000289 xref: MESH:A.04.531.591.940 xref: OG:0000665 xref: SCTID:361346007 xref: XAO:0000272 is_a: UBERON:0000020 ! sense organ is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system relationship: develops_from UBERON:0003050 {source="Wikipedia"} ! olfactory placode relationship: part_of UBERON:0000004 ! olfactory apparatus relationship: part_of UBERON:0009954 ! vomeronasal system [Term] id: UBERON:0002256 name: dorsal horn of spinal cord alt_id: UBERON:FMA_77405-MA_0001119 def: "the pronounced, dorsolaterally oriented ridge of grey matter in each lateral half of the spinal cord[MP]. the dorsal (more towards the back) grey matter of the spinal cord. It receives several types of sensory information from the body, including light touch, proprioception, and vibration. This information is sent from receptors of the skin, bones, and joints through sensory neurons whose cell bodies lie in the dorsal root ganglion[WP]. The dorsal region of the mature spinal cord contains neurons that process and relay sensory input[GO]." [GO:0021516, MP:0006282, Wikipedia:Posterior_horn_of_spinal_cord] comment: This class was created automatically from a combination of ontologies subset: vertebrate_core synonym: "cornu dorsale" EXACT [ZFA:0000649] synonym: "dorsal gray column of spinal cord" EXACT [FMA:256530] synonym: "dorsal gray horn" EXACT [NIF_GrossAnatomy:birnlex_2667] synonym: "dorsal gray matter of spinal cord" EXACT [FMA:256530] synonym: "dorsal grey column of spinal cord" EXACT [] synonym: "dorsal horn" EXACT [ZFA:0000649] synonym: "dorsal horn spinal cord" EXACT [ZFA:0000649] synonym: "dorsal region of mature spinal cord" EXACT [] synonym: "dorsal region of spinal cord" EXACT [] synonym: "dorsal spinal cord" EXACT [] synonym: "posterior gray column of spinal cord" EXACT [FMA:256530] synonym: "posterior gray horn of spinal cord" EXACT [FMA:256530] synonym: "posterior grey column of spinal cord" EXACT [] synonym: "posterior horn of spinal cord" EXACT [Wikipedia:Posterior_horn_of_spinal_cord] synonym: "spinal cord dorsal horn" EXACT [] synonym: "spinal cord posterior horn" EXACT [NIF_GrossAnatomy:birnlex_2667] xref: BM:SpC-DH xref: EMAPA:17773 xref: FMA:256530 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/dc/Medulla_spinalis_-_Section_-_English.svg/200px-Medulla_spinalis_-_Section_-_English.svg.png xref: MA:0001119 xref: ncithesaurus:Dorsal_Horn_of_the_Spinal_Cord xref: NIF_GrossAnatomy:birnlex_2667 xref: OG:0001287 xref: SCTID:180961004 xref: ZFA:0000649 is_a: UBERON:0001948 ! regional part of spinal cord relationship: part_of UBERON:0002315 ! gray matter of spinal cord [Term] id: UBERON:0002257 name: ventral horn of spinal cord alt_id: UBERON:FMA_77431-MA_0001134 def: "the ventral grey column of the spinal cord[MP]. The neurons of the ventral region of the mature spinal cord participate in motor output[GO]." [GO:0021517, MP:0005112] comment: This class was created automatically from a combination of ontologies subset: vertebrate_core synonym: "anterior gray column of spinal cord" EXACT [FMA:256541] synonym: "anterior gray horn of spinal cord" EXACT [FMA:256541] synonym: "anterior grey column of spinal cord" EXACT [] synonym: "anterior horn" EXACT [NIF_GrossAnatomy:birnlex_2668] synonym: "spinal cord anterior horn" EXACT [NIF_GrossAnatomy:birnlex_2668] synonym: "spinal cord ventral horn" EXACT [] synonym: "ventral gray column of spinal cord" EXACT [FMA:256541] synonym: "ventral gray matter of spinal cord" EXACT [FMA:256541] synonym: "ventral grey column of spinal cord" EXACT [] synonym: "ventral grey horn" EXACT [NIF_GrossAnatomy:birnlex_2668] synonym: "ventral horn spinal cord" EXACT [ZFA:0000702] synonym: "ventral region of spinal cord" EXACT [] synonym: "ventral spinal cord" EXACT [] xref: EMAPA:18575 xref: FMA:256541 xref: MA:0001134 xref: ncithesaurus:Ventral_Horn_of_the_Spinal_Cord xref: NIF_GrossAnatomy:birnlex_2668 xref: OG:0001288 xref: SCTID:279443000 xref: ZFA:0000702 is_a: UBERON:0001948 ! regional part of spinal cord relationship: part_of UBERON:0002315 ! gray matter of spinal cord [Term] id: UBERON:0002258 name: dorsal funiculus alt_id: UBERON:FMA_77461-ZFA_0000501 def: "The portion of the medulla spinalis which lies between the posterolateral sulcus and the posterior median sulcus is named the posterior funiculus. This area includes the dorsal columns (also called the posterior columns) which contains the fasciculus gracilis and, higher in the body, the fasciculus cuneatus, which are separated by a partition of glial cells. Histologically, these two fasciculi are on other sides of the dorsal intermediate sulcus. [WP,unvetted]." [Wikipedia:Dorsal_funiculus] subset: uberon_slim subset: vertebrate_core synonym: "dorsal funiculus of spinal cord" EXACT [] synonym: "dorsal white column of spinal cord" EXACT [FMA:77461] synonym: "funiculus dorsalis" EXACT [ZFA:0000501] synonym: "funiculus posterior medullae spinalis" EXACT [FMA:77461, FMA:TA] synonym: "posterior funiculus" EXACT [] synonym: "posterior funiculus of spinal cord" EXACT [] synonym: "posterior white column of spinal cord" EXACT [FMA:77461] xref: FMA:77461 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/dc/Medulla_spinalis_-_Section_-_English.svg/200px-Medulla_spinalis_-_Section_-_English.svg.png xref: SCTID:362432005 xref: TAO:0000501 xref: ZFA:0000501 is_a: UBERON:0006127 ! funiculus of spinal cord [Term] id: UBERON:0002259 name: corpora quadrigemina alt_id: UBERON:FMA_77488-MA_0002567 def: "In the brain, the corpora quadrigemina (Latin for 'quadruplet bodies') are the four colliculi—two inferior, two superior—located on the tectum the dorsal aspect of the midbrain. The corpora quadrigemina are reflex centers involving vision and hearing. [WP,unvetted]. Two pairs of colliculi on the dorsal surface of the midbrain composed of white matter externally and gray matter within, the superior pair containing correlation centers for optic reflexes and the inferior pair containing correlation centers for auditory reflexes[BTO]." [BTO:0001710, Wikipedia:Corpora_quadrigemina] comment: editor note: this section needs worked on for pan-vertebrate consistency. for now we include a mammal specific definition, even though the child terms are applicable across vertebrates subset: uberon_slim synonym: "colliculi" EXACT [MP:0000899] synonym: "corpora quadrigemina" EXACT [] xref: BTO:0001710 xref: EV:0100244 xref: FMA:242157 xref: GAID:574 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/77/Gray709.png/200px-Gray709.png xref: MA:0002567 xref: MESH:A.08.186.211.132.659.237 xref: ncithesaurus:Corpora_Quadrigemina xref: SCTID:361579006 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: develops_from UBERON:0006777 ! tectal plate relationship: part_of UBERON:0002314 ! midbrain tectum [Term] id: UBERON:0002260 name: ventral root of spinal cord alt_id: UBERON:FMA_77516-ZFA_0000705 def: "The efferent motor root of a spinal nerve. At its distal end, the ventral root joins with the dorsal root to form a mixed spinal nerve." [Wikipedia:Anterior_root_of_spinal_nerve] comment: FMA:77516 xref is a 'general anatomical term'. We xref both to ensure equivalence. subset: uberon_slim subset: vertebrate_core synonym: "anterior nerve root" RELATED [Wikipedia:Anterior_root_of_spinal_nerve] synonym: "anterior root" RELATED [Wikipedia:Anterior_root_of_spinal_nerve] synonym: "ventral root" EXACT [NIF_GrossAnatomy:nlx_anat_20090209] xref: FMA:5979 xref: FMA:77516 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d2/Spinal_nerve.svg/200px-Spinal_nerve.svg.png xref: NIF_GrossAnatomy:nlx_anat_20090209 xref: TAO:0000705 xref: ZFA:0000705 is_a: UBERON:0009623 {different_relation_from="ZFA", source="FMA"} ! spinal nerve root [Term] id: UBERON:0002261 name: dorsal root of spinal cord alt_id: UBERON:FMA_77517-ZFA_0000652 def: "In anatomy and neurology, the dorsal root (or posterior root) is the afferent sensory root of a spinal nerve. At the distal end of the dorsal root is the dorsal root ganglion, which contains the neuron cell bodies of the nerve fibres conveyed by the root. If the dorsal root of a spinal nerve were severed it would lead to numbness in certain areas of the body. The lateral division of the dorsal root contains lightly myelinated and unmyelinated axons of small diameter. These transmit pain and temperature sensation from the body. These fibers cross through the anterior white commissure to form the Anterior lateral system in the lateral funiculus. The medial division of the dorsal root contains myelinated axons of larger diameter. These transmit information of discriminative touch, pressure, vibration, and conscious proprioception originating from spinal levels C2 through S5. These fibers are pushed in towards the posterior medial sulcus to form the fasciculus gracilis and the fasciculus cuneatus. [WP,unvetted]." [Wikipedia:Posterior_root_of_spinal_nerve] comment: FMA xref is 'general anatomical term'. We xref both to ensure equivalence. subset: uberon_slim subset: vertebrate_core synonym: "dorsal root" EXACT [ZFA:0000652] synonym: "dorsal root of spinal nerve" EXACT [FMA:5980] synonym: "dorsal spinal nerve root" EXACT [FMA:5980] synonym: "posterior root of spinal nerve" EXACT [Wikipedia:Posterior_root_of_spinal_nerve] synonym: "radix dorsalis" EXACT [ZFA:0000652] synonym: "radix posterior (nervus spinalis)" EXACT [FMA:5980] synonym: "radix sensoria (nervus spinalis)" EXACT [FMA:5980] synonym: "sensory root of spinal nerve" EXACT [FMA:5980] xref: BTO:0000360 xref: FMA:5980 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d2/Spinal_nerve.svg/200px-Spinal_nerve.svg.png xref: ncithesaurus:Dorsal_Root_of_the_Spinal_Nerve xref: NIF_GrossAnatomy:nlx_anat_20090208 xref: SCTID:362436008 xref: TAO:0000652 xref: ZFA:0000652 is_a: UBERON:0009623 {source="FMA"} ! spinal nerve root [Term] id: UBERON:0002262 name: celiac ganglion alt_id: UBERON:FMA_77570-MA_0001158 def: "The celiac ganglia are two large irregularly shaped masses of nerve tissue in the upper abdomen. Part of the sympathetic subdivision of the autonomic nervous system (ANS), the two celiac ganglia are the largest ganglia in the ANS, and they innervate most of the digestive tract. They have the appearance of lymph glands and are placed on either side of the midline in front of the crura of the diaphragm, close to the suprarenal glands (also called adrenal glands). The ganglion on the right side is placed behind the inferior vena cava. They are sometimes referred to as the semilunar ganglia or the solar ganglia. [WP,unvetted]." [Wikipedia:Celiac_ganglion] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "coeliac ganglion" RELATED [] xref: EHDAA:8946 xref: EHDAA2:0000266 xref: EMAPA:19321 xref: FMA:77570 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/63/Gray848.png/200px-Gray848.png xref: MA:0001158 xref: ncithesaurus:Coeliac_Ganglion xref: SCTID:362492008 is_a: UBERON:0003964 ! prevertebral ganglion [Term] id: UBERON:0002263 name: lentiform nucleus alt_id: UBERON:FMA_77615-MA_0000896 def: "The lentiform nucleus or lenticular nucleus comprises the putamen and the globus pallidus within the basal ganglia. It is a large, cone-shaped mass of gray matter just lateral to the internal capsule. [WP,unvetted]. The part of the corpus striatum somewhat resembling a biconvex lens, divided into an external, larger, lateral part (putamen) and an internal, smaller, lighter colored medial part (globus pallidus), which is in turn subdivided into a smaller, medial, and a larger, lateral part by the medial medullary lamina[BTO]." [BTO:0002250, Wikipedia:Lentiform_nucleus] comment: TODO - add parts subset: uberon_slim synonym: "lenticular nucleus" RELATED [BTO:0002250] synonym: "nucleus lenticularis" EXACT [BTO:0002250] synonym: "nucleus lentiformis" EXACT [BTO:0002250] xref: BTO:0002250 xref: EMAPA:18208 xref: EV:0100186 xref: FMA:77615 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fc/Gray741.png/200px-Gray741.png xref: MA:0000896 xref: ncithesaurus:Lenticular_Nucleus xref: OpenCyc:Mx4rvvyH2ZwpEbGdrcN5Y29ycA xref: SCTID:279319002 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0009663 ! implied link automatically realized ! telencephalic nucleus relationship: has_part UBERON:0001874 ! putamen relationship: has_part UBERON:0001875 ! globus pallidus relationship: part_of UBERON:0000369 ! corpus striatum relationship: part_of UBERON:0005403 ! ventral striatum [Term] id: UBERON:0002264 name: olfactory bulb alt_id: UBERON:FMA_77624-MA_0000194-MIAA_0000116-ZFA_0000402 def: "A bulbous anterior projection of the olfactory lobe that is the place of termination of the olfactory nerves and is especially well developed in lower vertebrates (as fishes)[BTO]. Segment of neural tree organ which is continuous with a set of olfactory nerves and an olfactory tract. In most vertebrates, the olfactory bulb is the most rostral (forward) part of the brain. In humans, however, the olfactory bulb is on the inferior (bottom) side of the brain. The olfactory bulb is supported and protected by the cribriform plate which in mammals, separates it from the olfactory epithelium, and which is perforated by olfactory nerve axons. The bulb is divided into two distinct structures, the main olfactory bulb, and the accessory olfactory bulb[WP]." [Wikipedia:Olfactory_bulb] comment: Note that in uberon 'main olfactory bulb' is a separate class, but some ontologies may treat this as partially synonymous. Development notes: the olfactory bulbs develop as bilateral evaginations from a region of the prosencephalic neural plate intercalated between the septal and the cortical anlagen (Cobos et al. 2001b, Rubenstein et al. 1998). Comparing the structure of the olfactory bulb among vertebrate species, such as the leopard frog and the lab mouse, reveals that they all share the same fundamental layout(WP). subset: uberon_slim subset: vertebrate_core synonym: "bulbus olfactorius" EXACT [Wikipedia:Olfactory_bulb] synonym: "olfactory lobe" RELATED [ZFA:0000402] xref: AAO:0010165 xref: ABA:OLF xref: BM:Tel-OB xref: BTO:0000961 xref: EHDAA2:0001294 xref: EV:0100173 xref: FMA:77624 xref: GAID:633 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d2/1543%2CVesalius%27OlfactoryBulbs.jpg/200px-1543%2CVesalius%27OlfactoryBulbs.jpg xref: MA:0000194 xref: MESH:A.08.186.211.577.699.573 xref: ncithesaurus:Olfactory_Bulb xref: NIF_GrossAnatomy:birnlex_1137 xref: OG:0000033 xref: SCTID:279394006 xref: TAO:0000402 xref: XAO:0004180 xref: ZFA:0000402 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001893 ! telencephalon relationship: part_of UBERON:0005366 ! olfactory lobe relationship: spatially_disjoint_from UBERON:0001950 {source="ABA"} ! neocortex relationship: spatially_disjoint_from UBERON:0002421 {source="ABA"} ! hippocampal formation [Term] id: UBERON:0002265 name: olfactory tract alt_id: UBERON:FMA_77626-MA_0000975 def: "Tract of brain which is continuous with olfactory bulb and the cerebral cortex.[FMA]" [FMA:FMA, Wikipedia:Olfactory_tract] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "olfactory peduncle" RELATED [BTO:0003647] synonym: "tractus olfactorius" RELATED [BTO:0003647] xref: BTO:0003647 xref: FMA:77626 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4d/Gray732.png/200px-Gray732.png xref: MA:0000975 xref: ncithesaurus:Olfactory_Tract xref: NIF_GrossAnatomy:birnlex_1663 xref: SCTID:362356008 is_a: UBERON:0000073 ! regional part of nervous system relationship: part_of UBERON:0001016 ! nervous system relationship: part_of UBERON:0002894 ! olfactory cortex [Term] id: UBERON:0002266 name: anterior olfactory nucleus alt_id: UBERON:FMA_77628-MA_0000968 def: "The anterior olfactory nucleus (AON; also called the anterior olfactory cortex) is a portion of the forebrain of vertebrates. [WP,unvetted]." [Wikipedia:Anterior_olfactory_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "anterior olfactory cortex" RELATED [BTO:0003649] synonym: "AON" RELATED [BTO:0003649] synonym: "nucleus retrobulbaris [a8]" EXACT [FMA:77628, FMA:TA] synonym: "retrobulbar nucleus [a8]" EXACT [] xref: ABA:AON xref: BM:Tel-OAN xref: BTO:0003649 xref: EV:0100174 xref: FMA:77628 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b1/Human_brainstem_anterior_view_2_description.JPG/200px-Human_brainstem_anterior_view_2_description.JPG xref: MA:0000968 xref: ncithesaurus:Anterior_Olfactory_Nucleus xref: NIF_GrossAnatomy:birnlex_1085 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0009663 ! implied link automatically realized ! telencephalic nucleus relationship: part_of UBERON:0002894 ! olfactory cortex relationship: spatially_disjoint_from UBERON:0002590 {source="ABA"} ! prepyriform area relationship: spatially_disjoint_from UBERON:0002893 {source="ABA"} ! nucleus of lateral olfactory tract relationship: spatially_disjoint_from UBERON:0004069 {source="ABA"} ! accessory olfactory bulb [Term] id: UBERON:0002267 name: laterodorsal tegmental nucleus alt_id: UBERON:FMA_77654-MA_0001016 def: "The laterodorsal tegmental nucleus (or lateroposterior tegmental nucleus) is a nucleus situated in the brainstem, spanning the midbrain tegmentum and the pontine tegmentum. [WP,unvetted]." [Wikipedia:Laterodorsal_tegmental_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "lateroposterior tegmental nucleus" EXACT [] synonym: "nucleus tegmentalis posterolateralis" EXACT [FMA:77654, FMA:TA] xref: ABA:LDT xref: BTO:0004016 xref: FMA:77654 xref: MA:0001016 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0006331 ! implied link automatically realized ! brainstem nucleus is_a: UBERON:0009662 ! implied link automatically realized ! hindbrain nucleus relationship: part_of UBERON:0000988 ! pons relationship: spatially_disjoint_from UBERON:0002047 {source="ABA"} ! pontine raphe nucleus relationship: spatially_disjoint_from UBERON:0002148 {source="ABA"} ! locus ceruleus relationship: spatially_disjoint_from UBERON:0002587 {source="ABA"} ! nucleus subceruleus relationship: spatially_disjoint_from UBERON:0003004 {source="ABA"} ! median raphe nucleus [Term] id: UBERON:0002268 name: olfactory organ alt_id: UBERON:FMA_77659-XAO_0000273 comment: note - fma general anatomical term. xao has no subtypes (but Johnstons organ develops from this). An olfactory organ overlaps with the olfactory system, because some parts of the nose (e.g. nasal skeleton) are parts of the skeletal system, which is spatially disjoint subset: functional_classification synonym: "olfactory neuroepithelium" RELATED [BTO:0001772] synonym: "organ olfactus" RELATED [BTO:0001772] synonym: "organum olfactorium" RELATED [BTO:0001772] xref: AAO:0010180 xref: BTO:0001772 xref: FMA:77659 xref: OG:0000287 xref: XAO:0000273 is_a: UBERON:0000020 ! implied link automatically realized ! sense organ is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: develops_from UBERON:0003050 ! olfactory placode relationship: overlaps UBERON:0005725 ! olfactory system [Term] id: UBERON:0002269 name: pupillary membrane alt_id: UBERON:FMA_77663-MA_0001293 def: "The pupillary membrane in mammals exists in the fetus as a source of blood supply for the lens. It normally atrophies from the time of birth to the age of four to eight weeks." [Wikipedia:Persistent_pupillary_membrane] comment: This class was created automatically from a combination of ontologies xref: FMA:77663 xref: MA:0001293 is_a: UBERON:0000158 ! membranous layer is_a: UBERON:0002050 ! implied link automatically realized ! embryonic structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0001771 ! pupil [Term] id: UBERON:0002270 name: hyaloid artery alt_id: UBERON:FMA_77670-ZFA_0005045 def: "The hyaloid artery is a branch of the ophthalmic artery, which is itself a branch of the internal carotid artery. It is contained within the optic stalk of the eye and extends from the optic disc through the vitreous humor to the lens. Usually fully regressed before birth, its purpose is to supply nutrient to the developing lens in the growing fetus. During the tenth week of development in humans (time varies depending on species), the lens grows independent of a blood supply and the hyaloid artery usually regresses. Its proximal portion remains as the central artery of the retina. Regression of the hyaloid artery leaves a clear central zone through the vitreous called the hyaloid canal or Cloquet's canal. Cloquet's canal is named after the man who first described it, French physician Jules Germain Cloquet (1790b1883). Occasionally the artery may not fully regress, resulting in the condition persistent hyaloid artery. More commonly, small remnants of the artery may remain. Free remnants can sometimes be seen as \"floaters\". An anterior remnant of the hyaloid artery can be seen in some people as Mittendorf's dot, a small pinpoint-like scar on the posterior surface of the lens. A posterior remnant may be seen where the artery left the optic disc, and is known as Bergmeister's papilla." [Wikipedia:Hyaloid_artery] comment: ZFA def is: Artery that is internal to the eye; this is more general than the human-centric definition here.. subset: uberon_slim subset: vertebrate_core synonym: "central artery of retina" RELATED [EMAPA:19242] synonym: "Cloquet's canal" RELATED [Wikipedia:Hyaloid_artery] synonym: "Cloquets canal" RELATED [Wikipedia:Hyaloid_artery] xref: EHDAA2:0004072 xref: EMAPA:19242 xref: FMA:77670 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Schematic_diagram_of_the_human_eye_en.svg/200px-Schematic_diagram_of_the_human_eye_en.svg.png xref: OG:0001478 xref: SCTID:308790003 xref: TAO:0005045 xref: XAO:0004155 xref: ZFA:0005045 is_a: UBERON:0001612 ! implied link automatically realized ! facial artery is_a: UBERON:0001637 {source="ZFA"} ! artery is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon is_a: UBERON:0003499 ! implied link automatically realized ! brain blood vessel is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue is_a: UBERON:0007625 ! implied link automatically realized ! pigment epithelium of eye relationship: part_of UBERON:0003098 ! optic stalk relationship: part_of UBERON:0005492 {source="ZFA"} ! hyaloid vessel relationship: part_of UBERON:0006010 ! hyaloid canal [Term] id: UBERON:0002271 name: periventricular zone of hypothalamus alt_id: UBERON:FMA_77682-MA_0000846 comment: This class was created automatically from a combination of ontologies synonym: "hypothalamus periventricular zone" EXACT [] xref: ABA:PVZ xref: FMA:77682 xref: MA:0000846 xref: OG:0000623 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001898 ! hypothalamus [Term] id: UBERON:0002272 name: medial zone of hypothalamus alt_id: UBERON:FMA_77683-MA_0000837 comment: This class was created automatically from a combination of ontologies synonym: "hypothalamus medial zone" EXACT [] xref: ABA:MEZ xref: FMA:77683 xref: MA:0000837 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001898 ! hypothalamus [Term] id: UBERON:0002273 name: lateral zone of hypothalamus alt_id: UBERON:FMA_77684-MA_0000833 comment: This class was created automatically from a combination of ontologies synonym: "hypothalamus lateral zone" EXACT [] xref: ABA:LZ xref: FMA:77684 xref: MA:0000833 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001898 ! hypothalamus [Term] id: UBERON:0002274 name: perifornical nucleus alt_id: UBERON:FMA_77688-MA_0000836 comment: This class was created automatically from a combination of ontologies xref: FMA:77688 xref: MA:0000836 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0006568 ! implied link automatically realized ! hypothalamic nucleus relationship: part_of UBERON:0002273 ! lateral zone of hypothalamus [Term] id: UBERON:0002275 name: reticular formation alt_id: UBERON:FMA_77719-ZFA_0000421 comment: note that this class denotes the generic structure, and not a specific one such as medullary or pontine reticular formation. subset: uberon_slim xref: FMA:77719 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9b/Gray701.png/200px-Gray701.png xref: MESH:A.08.186.211.132.772 xref: SCTID:361552007 is_a: UBERON:0000073 ! regional part of nervous system [Term] id: UBERON:0002276 name: lamina of spiral limbus alt_id: UBERON:FMA_77721-MA_0001191 def: "The osseous spiral lamina consists of two plates of bone, and between these are the canals for the transmission of the filaments of the acoustic nerve. On the upper plate of that part of the lamina which is outside the vestibular membrane, the periosteum is thickened to form the limbus spiralis (or limbus laminæ spiralis), this ends externally in a concavity, the sulcus spiralis internus, which represents, on section, the form of the letter C. [WP,unvetted]." [Wikipedia:Limbus_laminae_spiralis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "limbus lamina spiralis" EXACT [] synonym: "limbus laminae spiralis" EXACT [] synonym: "spiral limbus lamina" EXACT [] xref: FMA:77721 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a5/Gray930.png/200px-Gray930.png xref: MA:0001191 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth [Term] id: UBERON:0002277 name: spiral sulcus alt_id: UBERON:FMA_77744-MA_0001195 comment: This class was created automatically from a combination of ontologies synonym: "sulcus spiralis" EXACT [] xref: FMA:77744 xref: MA:0001195 is_a: UBERON:0000093 ! sulcus relationship: part_of UBERON:0001855 {source="MA"} ! cochlear duct of membranous labyrinth [Term] id: UBERON:0002278 name: perilymphatic space alt_id: UBERON:FMA_77745-MA_0000248 def: "The fluid-filled space separating the membranous from the osseous labyrinth." [Dorlands_Medical_Dictionary:MerckSource] subset: vertebrate_core synonym: "perilymphatic channel" EXACT [] synonym: "Retzius space" RELATED [] synonym: "spatium perilymphaticum" RELATED [] xref: BTO:0002083 xref: FMA:77745 xref: MA:0000248 xref: SCTID:362576001 xref: ZFA:0005459 is_a: UBERON:0002553 ! anatomical cavity relationship: adjacent_to UBERON:0001839 ! bony labyrinth relationship: adjacent_to UBERON:0001849 ! membranous labyrinth relationship: part_of UBERON:0001846 ! internal ear [Term] id: UBERON:0002279 name: vestibular aqueduct alt_id: UBERON:FMA_77821-MA_0001186 def: "At the hinder part of the medial wall of the vestibule is the orifice of the vestibular aqueduct, which extends to the posterior surface of the petrous portion of the temporal bone. It transmits a small vein, and contains a tubular prolongation of the membranous labyrinth, the ductus endolymphaticus, which ends in a cul-de-sac between the layers of the dura mater within the cranial cavity. [WP,unvetted]." [Wikipedia:Vestibular_aqueduct] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:77821 xref: GAID:885 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray921.png/200px-Gray921.png xref: MA:0001186 xref: MESH:A.09.246.631.909.957 is_a: UBERON:0005744 ! cranial conduit relationship: part_of UBERON:0005236 ! osseus labyrinth vestibule [Term] id: UBERON:0002280 name: otolith alt_id: UBERON:FMA_77826-ZFA_0001617 def: "Acellular structure composed of calcium carbonate located in the otolith organ." [Wikipedia:Otolith, ZFIN:curator] subset: uberon_slim subset: vertebrate_core synonym: "immature otolith" RELATED [] synonym: "immature otoliths" RELATED [] synonym: "otoconium" EXACT [] synonym: "otoliths" EXACT PLURAL [] synonym: "statoconium" EXACT [] synonym: "statolith" RELATED [] xref: ANISEED:777311 xref: ANISEED:874485 xref: FMA:77826 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Bigotolith.jpg/200px-Bigotolith.jpg xref: ncithesaurus:Otolith xref: TAO:0001621 xref: ZFA:0001617 is_a: UBERON:0000476 ! acellular anatomical structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0002518 ! otolith organ [Term] id: UBERON:0002281 name: vestibular membrane of cochlear duct alt_id: UBERON:FMA_77829-MA_0001200 def: "a membrane inside the cochlea of the inner ear. It separates scala media from scala vestibuli. Together with the basilar membrane it creates a compartment in the cochlea filled with endolymph, which is important for the function of the organ of Corti. It primarily functions as a diffusion barrier, allowing nutrients to travel from the perilymph to the endolymph of the membranous labyrinth. Histologically, the membrane is composed of two layers of flattened epithelium, separated by a basal lamina. Its structure suggests that its function is transport of fluid and electrolytes." [Wikipedia:Reissner's_membrane] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Reissner's membrane" EXACT [] synonym: "superior wall of cochlear duct" EXACT [] synonym: "vestibular membrane" EXACT [] synonym: "vestibular membrane of reissner" EXACT [] xref: FMA:77829 xref: MA:0001200 xref: SCTID:362575002 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth [Term] id: UBERON:0002282 name: stria vascularis of cochlear duct alt_id: UBERON:FMA_77832-MA_0001198 def: "The upper portion of the spiral ligament contains numerous capillary loops and small blood vessels, and is termed the stria vascularis. It produces endolymph for the scala media, one of the three fluid-filled compartments of the cochlea. [WP,unvetted]." [Wikipedia:Stria_vascularis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "stria vascularis" EXACT [] synonym: "stria vascularis ductus cochlearis" RELATED [BTO:0001819] synonym: "stria vascularis of cochlea" EXACT [] synonym: "vascular stria of cochlear duct" RELATED [BTO:0001819] xref: BTO:0001819 xref: EFO:0001644 xref: FMA:77832 xref: GAID:875 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c7/Cochlea-crosssection.png/200px-Cochlea-crosssection.png xref: MA:0001198 xref: MESH:A.09.246.631.246.292.876 xref: NIF_GrossAnatomy:birnlex_2525 xref: SCTID:279842002 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: develops_from UBERON:0002342 {source="NBK53175"} ! neural crest relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth [Term] id: UBERON:0002283 name: nail matrix alt_id: UBERON:FMA_77856-MA_0002707 def: "Portion of tissue (or germinal matrix) upon which the nail rests, the part of the nail bed that extends beneath the nail root and contains nerves, lymph and blood vessels. The matrix is responsible for the production of the cells that become the nail plate. The width and thickness of the nail plate is determined by the size, length, and thickness of the matrix, while the shape of the fingertip itself determines if the nail plate is flat, arched, or hooked. The matrix will continue to grow as long as it receives nutrition and remains in a healthy condition. As new nail plate cells are incubated, they emerge from the matrix round and white to push older nail plate cells forward; and in this way yet older cells become compressed, flat, and translucent, making the pink colour of the capillaries in the nail bed below visible[WP]." [UBERON:cjm] subset: uberon_slim synonym: "keratogenous membrane" EXACT [Wikipedia:Nail_(anatomy)#Parts_of_the_nail] synonym: "matrix unguis" EXACT [Wikipedia:Nail_(anatomy)#Parts_of_the_nail] synonym: "onychostroma" EXACT [Wikipedia:Nail_(anatomy)#Parts_of_the_nail] xref: FMA:77856 xref: MA:0002707 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001705 ! nail [Term] id: UBERON:0002284 name: hyponychium alt_id: UBERON:FMA_77860-MA_0002705 def: "Epithelium located beneath the nail plate at the junction between the free edge and the skin of the fingertip. It forms a seal that protects the nail bed." [Wikipedia:Hyponychium] subset: uberon_slim xref: FMA:77860 xref: MA:0002705 xref: SCTID:300918002 is_a: UBERON:0000483 ! epithelium relationship: adjacent_to UBERON:0001705 ! nail relationship: part_of UBERON:0002097 ! skin of body [Term] id: UBERON:0002285 name: lateral ventricle alt_id: UBERON:FMA_78448-MA_0000192 def: "The two lateral ventricles are a cavity in each of the cerebral hemispheres derived from the cavity of the embryonic neural tube. They are separated from each other by the septum pellucidum, and each communicates with the third ventricle by the foramen of Monro, through which also the choroid plexuses of the lateral ventricles become continuous with that of the third ventricle[GO]. The lateral ventricles are part of the ventricular system of the brain. Classified as part of the telencephalon, they are the largest of the ventricles. The lateral ventricles connect to the central third ventricle through the interventricular foramina of Monro[WP]." [GO:0021670, Wikipedia:Lateral_ventricle] comment: Paired structure subset: uberon_slim subset: vertebrate_core synonym: "lateral ventricle of brain" RELATED [BTO:0000879] synonym: "telencephalic ventricle" EXACT [OG:0000643, ZFA:0000696] synonym: "telencephalon lateral ventricle" EXACT [EHDAA2:0001984] xref: BM:Tel-LV xref: BTO:0000879 xref: EFO:0001961 xref: EHDAA:3502 xref: EHDAA:6576 xref: EHDAA2:0001984 xref: EV:0100307 xref: FMA:78448 xref: GAID:611 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Gray734.png/200px-Gray734.png xref: MA:0000192 xref: MESH:A.08.186.211.276.650 xref: ncithesaurus:Lateral_Ventricle xref: NIF_GrossAnatomy:birnlex_1263 xref: OG:0000643 xref: OpenCyc:Mx4rvYsFdZwpEbGdrcN5Y29ycA xref: SCTID:180930008 xref: ZFA:0000696 is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon is_a: UBERON:0004086 ! brain ventricle relationship: part_of UBERON:0001893 ! telencephalon [Term] id: UBERON:0002286 name: third ventricle alt_id: UBERON:FMA_78454-MA_0000182-ZFA_0000161 def: "Part of the ventricular system of the brain, forming a single large cavity in the midline of the diencephalon; it is continuous with the lateral ventricles through the interventricular foramen and the fourth ventricle through the cerebral aqueduct (Maryann Martone). A narrow cleft inferior to the corpus callosum, within the diencephalon, between the paired thalami. Its floor is formed by the HYPOTHALAMUS, its anterior wall by the lamina terminalis, and its roof by EPENDYMA. It communicates with the FOURTH VENTRICLE by the CEREBRAL AQUEDUCT, and with the LATERAL VENTRICLES by the interventricular foramina[GAID]." [GAID:614, NIF_GrossAnatomy:birnlex_714, Wikipedia:Third_ventricle] comment: Singular structure subset: uberon_slim subset: vertebrate_core synonym: "3rd ventricle" EXACT [] synonym: "diencephalic ventricle" RELATED [] synonym: "diencephalic vesicle" RELATED [] synonym: "ventriculus diencephali" EXACT [ZFA:0000161] xref: BM:Die-3V xref: EHDAA2:0000084 xref: EMAPA:16515 xref: EMAPA:16642 xref: EMAPA:16900 xref: EV:0100308 xref: FMA:78454 xref: GAID:614 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Gray734.png/200px-Gray734.png xref: MA:0000182 xref: MESH:A.08.186.211.276.840 xref: ncithesaurus:Third_Ventricle_of_Brain xref: NIF_GrossAnatomy:birnlex_714 xref: OG:0000007 xref: OpenCyc:Mx4rvakhcJwpEbGdrcN5Y29ycA xref: SCTID:180931007 xref: TAO:0000161 xref: ZFA:0000161 is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon is_a: UBERON:0004086 ! brain ventricle relationship: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0002287 name: optic recess of third ventricle alt_id: UBERON:FMA_78455-ZFA_0000049 def: "At the junction of the floor and anterior wall of the third ventricle, immediately above the optic chiasma, the ventricle presents a small angular recess or diverticulum, the optic recess (or supraoptic recess). [WP,unvetted]." [Wikipedia:Optic_recess] comment: TODO - check taxonomic grouping subset: uberon_slim subset: vertebrate_core synonym: "optic recess" EXACT [] synonym: "preoptic recess" EXACT [] synonym: "recessus supraopticus" EXACT [FMA:78455, FMA:TA] synonym: "supraoptic recess" EXACT [] xref: EHDAA:1343 xref: EHDAA:1973 xref: EHDAA:2649 xref: EHDAA:3478 xref: EHDAA2:0001317 xref: EMAPA:16644 xref: EMAPA:16902 xref: FMA:78455 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fa/Gray721.png/200px-Gray721.png xref: OG:0000595 xref: SCTID:369279008 xref: TAO:0000049 xref: ZFA:0000049 is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0001893 ! telencephalon relationship: part_of UBERON:0002286 ! third ventricle [Term] id: UBERON:0002288 name: choroid plexus of third ventricle alt_id: UBERON:FMA_78462-MA_0000879 def: "A choroid plexus that is part of a third ventricle [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies subset: vertebrate_core synonym: "3rd ventricle choroid plexus" RELATED [] synonym: "chorioid plexus of cerebral hemisphere of third ventricle" EXACT [OBOL:automatic] synonym: "chorioid plexus of third ventricle" EXACT [] synonym: "choroid plexus third ventricle" EXACT [ZFA:0001444] synonym: "diencephalic choroid plexus " EXACT [ZFA:0001444] synonym: "third ventricle chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic] synonym: "third ventricle choroid plexus" EXACT [] xref: FMA:78462 xref: MA:0000879 xref: ncithesaurus:Choroid_Plexus_of_the_Third_Ventricle xref: OG:0001374 xref: SCTID:61576002 xref: ZFA:0001444 is_a: UBERON:0001886 ! choroid plexus is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon relationship: part_of UBERON:0002286 intersection_of: UBERON:0001886 ! choroid plexus intersection_of: part_of UBERON:0002286 ! third ventricle relationship: part_of UBERON:0002286 ! third ventricle [Term] id: UBERON:0002289 name: cerebral aqueduct alt_id: UBERON:0005684 alt_id: UBERON:FMA_78467-MA_0000208 def: "The mesencephalic duct, also known as the aqueductus mesencephali, aqueduct of Sylvius or the cerebral aqueduct, contains cerebrospinal fluid (CSF), is within the mesencephalon (or midbrain) and connects the third ventricle in the diencephalon to the fourth ventricle, which is between the pons and cerebellum. [WP,unvetted]." [Wikipedia:Cerebral_aqueduct] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "aqueduct (sylvius)" EXACT [] synonym: "aqueduct of midbrain" EXACT [] synonym: "aqueduct of sylvius" EXACT [] synonym: "aqueductus mesencephali" EXACT [FMA:78467, FMA:TA] synonym: "cerebral aquaduct" EXACT [ZFA:0000159] synonym: "cerebral aqueduct of sylvius" EXACT [] synonym: "medial tectal ventricle" EXACT [ZFA:0000159] synonym: "mesencephalic ventricle" EXACT [ZFA:0000159] synonym: "mesencephalic vesicle" EXACT [ZFA:0000159] synonym: "midbrain cerebral aqueduct" EXACT [EHDAA2:0001163] synonym: "midbrain ventricle" EXACT [ZFA:0000159] synonym: "tectal ventricle" EXACT [ZFA:0000159] xref: BM:MB-AQ xref: EFO:0003501 xref: EHDAA:3696 xref: EHDAA2:0001163 xref: EMAPA:17795 xref: EV:0100309 xref: FMA:78467 xref: GAID:583 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/da/Cn3nucleus.png/200px-Cn3nucleus.png xref: MA:0000208 xref: MESH:A.08.186.211.132.659.822.187 xref: ncithesaurus:Aqueduct_of_Sylvius xref: NIF_GrossAnatomy:birnlex_1261 xref: OG:0000832 xref: SCTID:279249003 xref: ZFA:0000159 is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain is_a: UBERON:0004086 ! brain ventricle relationship: part_of UBERON:0001891 ! midbrain [Term] id: UBERON:0002290 name: choroid plexus of fourth ventricle alt_id: UBERON:FMA_78492-MA_0000983 def: "A choroid plexus that is part of a fourth ventricle [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies subset: vertebrate_core synonym: "4th ventricle choroid plexus" RELATED [] synonym: "chorioid plexus of cerebral hemisphere of fourth ventricle" EXACT [OBOL:automatic] synonym: "chorioid plexus of fourth ventricle" EXACT [] synonym: "choroid plexus fourth ventricle" EXACT [ZFA:0001446] synonym: "fourth ventricle chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic] synonym: "fourth ventricle choroid plexus" EXACT [] xref: FMA:78492 xref: MA:0000983 xref: ncithesaurus:Choroid_Plexus_of_the_Fourth_Ventricle xref: OG:0001375 xref: SCTID:42214001 xref: ZFA:0001446 is_a: UBERON:0001886 ! choroid plexus is_a: UBERON:0002946 ! implied link automatically realized ! regional part of cerebellum relationship: part_of UBERON:0002422 intersection_of: UBERON:0001886 ! choroid plexus intersection_of: part_of UBERON:0002422 ! fourth ventricle relationship: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0002291 name: central canal alt_id: UBERON:0002220 alt_id: UBERON:FMA_75364-MA_0001117 alt_id: UBERON:FMA_78497-ZFA_0000938 def: "Spinal cord structure that is part of the ventricular system and is filled with cerebral-spinal fluid and runs the length of the spinal cord." [ZFIN:curator] comment: previously mapped to FMA:75364. Note some ontologies (NIF, SNOMED) subdivide this into lumbar, thoracic, etc. Note we follow FMA in distinguishing between the canal and the lumen subset: uberon_slim subset: vertebrate_core synonym: "canalis centralis" EXACT [ZFA:0000938] synonym: "central canal of spinal cord" EXACT [] synonym: "neural lumen" RELATED [] synonym: "spinal cord central canal" EXACT [] synonym: "ventricle of spinal cord" EXACT [FMA:78497] xref: FMA:78497 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/dc/Medulla_spinalis_-_Section_-_English.svg/200px-Medulla_spinalis_-_Section_-_English.svg.png xref: MA:0001117 xref: ncithesaurus:Central_Canal xref: NIF_GrossAnatomy:birnlex_1409 xref: SCTID:279447004 xref: TAO:0000938 xref: ZFA:0000938 is_a: UBERON:0004111 {source="cjm"} ! anatomical conduit is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: develops_from UBERON:0001049 ! neural tube relationship: has_part UBERON:0001359 ! cerebrospinal fluid relationship: part_of UBERON:0002240 {source="MA"} ! spinal cord relationship: part_of UBERON:0005281 {source="FMA"} ! ventricular system of central nervous system [Term] id: UBERON:0002292 name: joint of head of rib alt_id: UBERON:FMA_7951-MA_0001510 def: "The costovertebral joints are the articulations that connect the heads of the ribs with the bodies of the thoracic vertebrae. Joining of ribs to the vertebrae occurs at two places, the head and the tubercle of the rib. Two convex facets from the head attach to two adjacent vertebrae. This forms a trochoid joint, which is strengthened by the ligament of the head and the intercapital ligament. Articulation of the tubercle is to the transverse process of the adjacent vertebrae. This articulation is reinforced by the dorsal costotransverse ligament. [WP,unvetted]." [Wikipedia:Costovertebral_joint] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "costal head joint" EXACT [] synonym: "costocorporeal joint" EXACT [] synonym: "costovertebral joint" EXACT [] synonym: "head of rib joint" EXACT [OBOL:automatic] synonym: "joint of costal head" EXACT [] synonym: "joint of rib head" EXACT [OBOL:automatic] synonym: "rib head joint" EXACT [OBOL:automatic] xref: EMAPA:19020 xref: EMAPA:19208 xref: FMA:7951 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c7/Gray312.png/200px-Gray312.png xref: MA:0001510 xref: ncithesaurus:Costovertebral_Joint xref: SCTID:263315000 is_a: UBERON:0002001 ! joint of rib is_a: UBERON:0002217 ! synovial joint relationship: part_of UBERON:0002230 intersection_of: UBERON:0000982 ! skeletal joint intersection_of: part_of UBERON:0002230 ! head of rib [Term] id: UBERON:0002293 name: costochondral joint alt_id: UBERON:FMA_7956-MA_0001509 def: "." [Wikipedia:Costochondral_joint] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "articulatio costochondralis" EXACT [] synonym: "chondrocostal synchondrosis" EXACT [] synonym: "costochondral junction" EXACT [] synonym: "costochondral synchondrosis" EXACT [] xref: FMA:7956 xref: MA:0001509 xref: ncithesaurus:Costochondral_Joint xref: OpenCyc:Mx4rvfy27JwpEbGdrcN5Y29ycA xref: SCTID:282413008 is_a: UBERON:0002001 {source="MA"} ! joint of rib is_a: UBERON:0002215 {source="FMA"} ! synchondrosis [Term] id: UBERON:0002294 name: biliary system alt_id: UBERON:FMA_79646-MA_0001273 def: "Anatomical system that consists of the organs and ducts (bile ducts, gallbladder, and associated structures) that are involved in the production and transportation of bile." [Wikipedia:Biliary_system] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "biliary apparatus" EXACT [] xref: FMA:79646 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5d/Digestive_system_showing_bile_duct.png/200px-Digestive_system_showing_bile_duct.png xref: SCTID:361354009 is_a: UBERON:0000467 ! anatomical system disjoint_from: UBERON:0000949 ! endocrine system disjoint_from: UBERON:0000990 ! reproductive system disjoint_from: UBERON:0001004 ! respiratory system disjoint_from: UBERON:0001007 ! digestive system disjoint_from: UBERON:0001008 ! excretory system disjoint_from: UBERON:0001009 ! circulatory system disjoint_from: UBERON:0001016 ! nervous system disjoint_from: UBERON:0001033 ! gustatory system disjoint_from: UBERON:0001434 ! skeletal system disjoint_from: UBERON:0002204 ! musculoskeletal system disjoint_from: UBERON:0002330 ! exocrine system disjoint_from: UBERON:0002390 ! hematopoietic system disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system relationship: part_of UBERON:0002423 ! hepatobiliary system [Term] id: UBERON:0002295 name: scala media alt_id: UBERON:FMA_79789-MA_0002458 def: "An endolymph filled cavity inside the cochlea, located in between the scala tympani and the scala vestibuli, separated by the basilar membrane and Reissner's membrane (the vestibular membrane) respectively. Scala media houses the organ of Corti. [WP,unvetted]." [Wikipedia:Scala_media] comment: TODO: check cochlear duct vs cochlear aqueduct vs scala media subset: uberon_slim synonym: "cochlear duct" RELATED [] xref: EHDAA2:0000262 xref: FMA:79789 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bc/Gray928.png/200px-Gray928.png xref: MA:0002458 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001844 ! cochlea [Term] id: UBERON:0002296 name: dorsal mesentery alt_id: UBERON:FMA_79795-ZFA_0005130 def: "The mesentery that originates from the dorsal side of the peritoneal cavity[ZFA]." [Wikipedia:Dorsal_mesentery, Wikipedia:Mesentery#Development, ZFIN:curator] subset: uberon_slim subset: vertebrate_core synonym: "dorsal mesogastrium" RELATED [Wikipedia:Dorsal_mesentery] xref: EHDAA:3019 xref: EHDAA:3033 xref: EHDAA:3921 xref: EHDAA:3934 xref: EHDAA:3957 xref: EHDAA:3971 xref: EHDAA2:0004560 xref: FMA:79795 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/85/Gray985.png/200px-Gray985.png xref: SCTID:308823000 xref: TAO:0005130 xref: ZFA:0005130 is_a: UBERON:0002050 {source="FMA"} ! embryonic structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: develops_into UBERON:0002095 ! mesentery relationship: part_of UBERON:0009664 {source="EHDAA2"} ! gut mesentery [Term] id: UBERON:0002297 name: cerumen alt_id: UBERON:FMA_79869-MA_0002506 def: "." [Wikipedia:Cerumen] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "ear wax" EXACT [] xref: ENVO:02000028 xref: FMA:79869 xref: GAID:1158 xref: MA:0002506 xref: MESH:A.12.200.147 xref: ncithesaurus:Cerumen is_a: UBERON:0000456 ! secretion [Term] id: UBERON:0002298 name: brainstem alt_id: UBERON:FMA_79876-MA_0000169 def: "The brainstem (or brain stem) is the lower part of the brain, adjoining and structurally continuous with the spinal cord. The brain stem provides the main motor and sensory innervation to the face and neck via the cranial nerves. Though small, this is an extremely important part of the brain as the nerve connections of the motor and sensory systems from the main part of the brain to the rest of the body pass through the brain stem. This includes the corticospinal tract (motor), the posterior column-medial lemniscus pathway (fine touch, vibration sensation and proprioception) and the spinothalamic tract (pain, temperature, itch and crude touch). The brain stem also plays an important role in the regulation of cardiac and respiratory function. It also regulates the central nervous system, and is pivotal in maintaining consciousness and regulating the sleep cycle. Some taxonomies describe the brain stem as the medulla oblongata (myelencephalon) and pons (part of metencephalon), whereas others include the midbrain (mesencephalon). [WP,unvetted]." [Wikipedia:Brainstem] comment: ZFA includes the tegmentum, MA the whole midbrain. Both include medulla oblongata. Here we make an overlaps link between midbrain and brainstem. Note that ABA states that cerebellum and brainstem are spatially disjoint. We do NOT include this axiom here, as it leads to multiple inconsistencies. This needs addressed in more detail. subset: uberon_slim subset: vertebrate_core synonym: "brain stem" EXACT [ABA:BS] synonym: "truncus encephalicus" RELATED [BTO:0000146] xref: ABA:BS xref: BTO:0000146 xref: EFO:0001962 xref: EV:0100241 xref: FMA:79876 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b7/Gray719.png/200px-Gray719.png xref: MA:0000169 xref: MESH:A.08.186.211.132 xref: ncithesaurus:Brain_Stem xref: NIF_GrossAnatomy:birnlex_1565 xref: OG:0001457 xref: SCTID:180925009 xref: ZFA:0001707 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000955 ! brain relationship: spatially_disjoint_from UBERON:0002037 {source="ABA"} ! cerebellum [Term] id: UBERON:0002299 name: alveolus of lung alt_id: UBERON:FMA_82493-MA_0000420 def: "Spherical outcropping of the respiratory bronchioles and primary site of gas exchange with the blood. Alveoli are particular to mammalian lungs. Different structures are involved in gas exchange in other vertebrates[WP]." [Wikipedia:Pulmonary_alveolus] subset: uberon_slim synonym: "alveoli" RELATED PLURAL [BTO:0000060] synonym: "alveolus" BROAD [] synonym: "alveolus pulmonis" EXACT [Wikipedia:Pulmonary_alveolus] synonym: "lung alveolus" EXACT [] synonym: "pulmonary alveolus" EXACT [FMA:7318] xref: BTO:0000060 xref: EFO:0001985 xref: EMAPA:19182 xref: EMAPA:19184 xref: EMAPA:19186 xref: EMAPA:19188 xref: EMAPA:19190 xref: EV:0100043 xref: FMA:7318 xref: GAID:349 xref: MA:0000420 xref: MESH:A.04.411.715 xref: OG:0001445 xref: SCTID:361364000 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003215 ! implied link automatically realized ! alveolus relationship: part_of UBERON:0002048 intersection_of: UBERON:0003215 ! alveolus intersection_of: part_of UBERON:0002048 ! lung relationship: part_of UBERON:0002169 {source="FMA"} ! alveolar sac relationship: part_of UBERON:0006524 {source="MA"} ! alveolar system [Term] id: UBERON:0002300 name: ventricle alt_id: UBERON:FMA_82553-MA_0000818 def: "A chamber of an organ with cavitated organ parts. Examples: right ventricle of heart, lateral ventricle of brain." [Wikipedia:Ventricle] comment: Note that this term is used in the general sense - there are specific subclasses for brain ventricle and heart ventricle. FMA Ventricle is general anatomical term. EFO ventricle is part_of heart. See also chamber. subset: uberon_slim xref: AAO:0010249 xref: EHDAA:1912 xref: EHDAA2:0002178 xref: FMA:82553 xref: galen:Ventricle xref: MAT:0000497 is_a: UBERON:0000061 ! anatomical structure relationship: has_part UBERON:0002553 ! anatomical cavity [Term] id: UBERON:0002301 name: layer of neocortex alt_id: UBERON:FMA_83138-MA_0000186 comment: This class was created automatically from a combination of ontologies synonym: "cerebral cortex layer" RELATED [MA:0000186] synonym: "cortical layer" EXACT [] synonym: "neocortex layer" EXACT [] xref: ABA:CTX1-6b xref: FMA:83138 xref: MA:0000186 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001950 ! neocortex [Term] id: UBERON:0002302 name: myocardium of atrium alt_id: UBERON:FMA_83509-MA_0000081-ZFA_0001374 def: "A myocardium that is part of a cardiac atrium [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies subset: vertebrate_core synonym: "atrial myocardium" EXACT [] synonym: "atrium myocardium" EXACT [] synonym: "atrium of heart cardiac muscle" EXACT [OBOL:automatic] synonym: "atrium of heart heart muscle" EXACT [OBOL:automatic] synonym: "atrium of heart heart myocardium" EXACT [OBOL:automatic] synonym: "atrium of heart muscle of heart" EXACT [OBOL:automatic] synonym: "atrium of heart myocardium" EXACT [OBOL:automatic] synonym: "Cardiac atria cardiac muscle" EXACT [OBOL:automatic] synonym: "Cardiac atria heart muscle" EXACT [OBOL:automatic] synonym: "Cardiac atria heart myocardium" EXACT [OBOL:automatic] synonym: "Cardiac atria muscle of heart" EXACT [OBOL:automatic] synonym: "Cardiac atria myocardium" EXACT [OBOL:automatic] synonym: "cardiac atrium cardiac muscle" EXACT [OBOL:automatic] synonym: "cardiac atrium heart muscle" EXACT [OBOL:automatic] synonym: "cardiac atrium heart myocardium" EXACT [OBOL:automatic] synonym: "cardiac atrium muscle of heart" EXACT [OBOL:automatic] synonym: "cardiac atrium myocardium" EXACT [OBOL:automatic] synonym: "cardiac muscle of atrium of heart" EXACT [OBOL:automatic] synonym: "cardiac muscle of Cardiac atria" EXACT [OBOL:automatic] synonym: "cardiac muscle of cardiac atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle of heart atrium" EXACT [OBOL:automatic] synonym: "heart atrium cardiac muscle" EXACT [OBOL:automatic] synonym: "heart atrium heart muscle" EXACT [OBOL:automatic] synonym: "heart atrium heart myocardium" EXACT [OBOL:automatic] synonym: "heart atrium muscle of heart" EXACT [OBOL:automatic] synonym: "heart atrium myocardium" EXACT [OBOL:automatic] synonym: "heart muscle of atrium of heart" EXACT [OBOL:automatic] synonym: "heart muscle of Cardiac atria" EXACT [OBOL:automatic] synonym: "heart muscle of cardiac atrium" EXACT [OBOL:automatic] synonym: "heart muscle of heart atrium" EXACT [OBOL:automatic] synonym: "heart myocardium of atrium of heart" EXACT [OBOL:automatic] synonym: "heart myocardium of Cardiac atria" EXACT [OBOL:automatic] synonym: "heart myocardium of cardiac atrium" EXACT [OBOL:automatic] synonym: "heart myocardium of heart atrium" EXACT [OBOL:automatic] synonym: "muscle of heart of atrium of heart" EXACT [OBOL:automatic] synonym: "muscle of heart of Cardiac atria" EXACT [OBOL:automatic] synonym: "muscle of heart of cardiac atrium" EXACT [OBOL:automatic] synonym: "muscle of heart of heart atrium" EXACT [OBOL:automatic] synonym: "myocardium of atrium of heart" EXACT [OBOL:automatic] synonym: "myocardium of Cardiac atria" EXACT [OBOL:automatic] synonym: "myocardium of cardiac atrium" EXACT [OBOL:automatic] synonym: "myocardium of heart atrium" EXACT [OBOL:automatic] xref: EFO:0003087 xref: FMA:83509 xref: MA:0000081 xref: OG:0000602 xref: SCTID:191910002 xref: TAO:0001374 xref: ZFA:0001374 is_a: UBERON:0002349 ! myocardium relationship: part_of UBERON:0002081 intersection_of: UBERON:0002349 ! myocardium intersection_of: part_of UBERON:0002081 ! cardiac atrium [Term] id: UBERON:0002303 name: juxtaglomerular apparatus alt_id: UBERON:FMA_83599-MA_0002546 def: "An anatomical structure which consists of juxtaglomerular cells, extraglomerular mesangial cells and the macula densa. The juxtaglomerular apparatus lies adjacent to the glomerulus and regulates kidney function by maintaining the blood flow to the kidney and the filtration rate[GO]. a microscopic structure in the kidney, which regulates the function of each nephron. The juxtaglomerular apparatus is named for its proximity to the glomerulus: it is found between the vascular pole of the renal corpuscle and the returning distal convoluted tubule of the same nephron. This location is critical to its function in regulating renal blood flow and glomerular filtration rate. The three cellular components of the apparatus are the macula densa, extraglomerular mesangial cells, and juxtaglomerular cells (also known as granular cells)[WP]." [GO:0072206, Wikipedia:Juxtaglomerular_apparatus] subset: uberon_slim synonym: "juxtaglomerular complex" EXACT [] xref: EMAPA:30449 xref: FMA:83599 xref: GAID:432 xref: MA:0002546 xref: MESH:A.05.810.453.736.520.520 xref: ncithesaurus:Juxtaglomerular_Apparatus xref: SCTID:362219002 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001225 ! cortex of kidney [Term] id: UBERON:0002304 name: layer of dentate gyrus alt_id: UBERON:FMA_83678-MA_0002429 comment: This class was created automatically from a combination of ontologies synonym: "dentate gyrus layer" EXACT [] xref: FMA:83678 xref: MA:0002429 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001885 ! dentate gyrus of hippocampal formation [Term] id: UBERON:0002305 name: layer of hippocampus alt_id: UBERON:FMA_83679-MA_0002427 def: "the layers of the laminar structure of the hippocampus." [MP:0000813, Wikipedia:Hippocampus_anatomy#Hippocampal_Cells_and_Layers] comment: TODO - check NIF xref synonym: "cytoarchitectural fields of hippocampal formation" EXACT [NIF_GrossAnatomy:birnlex_1192] synonym: "hippocampus layer" EXACT [] xref: FMA:83679 xref: MA:0002427 xref: NIF_GrossAnatomy:birnlex_1192 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001954 ! Ammon's horn [Term] id: UBERON:0002306 name: nasal mucus alt_id: UBERON:FMA_83688-MA_0002535 def: "In the respiratory system mucus aids in the protection of the lungs by trapping foreign particles that enter it, particularly through the nose, during normal breathing. Phlegm is a specialized term for mucus that is restricted to the respiratory tract, while the term mucus more globally describes secretions of the nasal passages as well." [Wikipedia:Nasal_mucus#Respiratory_system] comment: TODO - split nasal vs respiratory tract? subset: uberon_slim synonym: "respiratory mucus" EXACT [BTO:0003603] xref: BTO:0003603 xref: FMA:83688 xref: MA:0002535 xref: ncithesaurus:Nasal_Mucus is_a: UBERON:0000912 ! mucus relationship: secreted_by UBERON:0004785 ! respiratory system mucosa [Term] id: UBERON:0002307 name: choroid plexus of lateral ventricle alt_id: UBERON:FMA_83711-MA_0000961 def: "A choroid plexus that is part of a lateral ventricle [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies subset: vertebrate_core synonym: "chorioid plexus of cerebral hemisphere of lateral ventricle" EXACT [OBOL:automatic] synonym: "chorioid plexus of lateral ventricle" EXACT [] synonym: "choroid plexus telencephalic ventricle" EXACT [ZFA:0001447] synonym: "lateral ventricle chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic] synonym: "lateral ventricle choroid plexus" EXACT [] xref: FMA:83711 xref: MA:0000961 xref: ncithesaurus:Choroid_Plexus_of_the_Lateral_Ventricle xref: OG:0001376 xref: SCTID:70064002 xref: ZFA:0001447 is_a: UBERON:0001886 ! choroid plexus is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon relationship: part_of UBERON:0002285 intersection_of: UBERON:0001886 ! choroid plexus intersection_of: part_of UBERON:0002285 ! lateral ventricle relationship: part_of UBERON:0002285 ! lateral ventricle [Term] id: UBERON:0002308 name: nucleus of brain alt_id: UBERON:FMA_83840-MA_0000811 def: "Nucleus of neuraxis which is located within the brain. Example: pontobulbar nucleus, globose nucleus[FMA]. brain structure consisting of a relatively compact cluster of neurons. It is one of the two most common forms of nerve cell organization, the other being layered structures such as the cerebral cortex or cerebellar cortex. In anatomical sections, a nucleus shows up as a region of gray matter, often bordered by white matter. The vertebrate brain contains hundreds of distinguishable nuclei, varying widely in shape and size. A nucleus may itself have a complex internal structure, with multiple types of neurons arranged in clumps (subnuclei) or layers.[Wikipedia]" [FMA:83840, Wikipedia:Nucleus_(neuroanatomy)] comment: We considered merging with 'neural nucleus' synonym: "brain nucleus" EXACT [] xref: FMA:83840 xref: MA:0000811 xref: ncithesaurus:Brain_Nucleus xref: SCTID:426465002 xref: ZFA:0005575 is_a: UBERON:0000125 ! implied link automatically realized ! neural nucleus is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain relationship: part_of UBERON:0000955 intersection_of: UBERON:0000125 ! neural nucleus intersection_of: part_of UBERON:0000955 ! brain relationship: part_of UBERON:0003528 ! brain grey matter [Term] id: UBERON:0002309 name: medial longitudinal fasciculus alt_id: UBERON:FMA_83846-ZFA_0000543 def: "The medial longitudinal fasciculus (MLF) is a pair of crossed fiber tracts, one on each side of the brainstem. These bundles of axons are situated near the midline of the brainstem and are composed of both ascending and descending fibers that arise from a number of sources and terminate in different areas. [WP,unvetted]." [Wikipedia:Medial_longitudinal_fasciculus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "MLF" RELATED [ZFA:0000543] xref: BTO:0003951 xref: FMA:83846 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/26/Gray711.png/200px-Gray711.png xref: SCTID:362397001 xref: TAO:0000543 xref: ZFA:0000543 is_a: UBERON:0005838 ! fasciculus of brain [Term] id: UBERON:0002310 name: hippocampus fimbria alt_id: UBERON:FMA_83866-MA_0000949 def: "A prominent band of white matter along the medial edge of the hippocampus[WP]." [Wikipedia:Fimbria_of_hippocampus] comment: This class was created automatically from a combination of ontologies synonym: "fimbria" EXACT [NIF_GrossAnatomy:birnlex_1502] synonym: "fimbria hippocampus" EXACT [] synonym: "fimbria of hippocampus" EXACT [FMA:83866] synonym: "fimbria of the fornix" EXACT [NIF_GrossAnatomy:birnlex_1502] synonym: "fimbria-fornix" EXACT [NIF_GrossAnatomy:birnlex_1502] synonym: "hippocampal fimbria" EXACT [MP:0009324] synonym: "neuraxis fimbria" EXACT [] xref: BM:Tel-FI xref: FMA:83866 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6b/Gray749.png/200px-Gray749.png xref: MA:0000949 xref: ncithesaurus:Fimbria xref: NIF_GrossAnatomy:birnlex_1502 xref: SCTID:369096000 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001954 {source="MA"} ! Ammon's horn [Term] id: UBERON:0002311 name: nodulus of cerebellum alt_id: UBERON:FMA_83882-MA_0001007 is_obsolete: true replaced_by: UBERON:0004083 [Term] id: UBERON:0002313 name: hippocampus pyramidal layer alt_id: UBERON:0005369 alt_id: UBERON:FMA_83895-MA_0000956 def: "A cytoarchitectural term denoting the layer of the hippocampus in which pyramidal cells are predominant. Its location is superficial to the Stratum oriens; it is deep to the Stratum radiatum in area CA1 and area CA2 and deep to the Stratum lucidum in area CA3 (Stephan-75) (NeuroNames)." [NIF_GrossAnatomy:birnlex_1444] synonym: "hippocampus stratum pyramidale" RELATED [] synonym: "pyramidal cell layer of the hippocampus" EXACT [NIF_GrossAnatomy:birnlex_1444] synonym: "pyramidal layer of hippocampus" EXACT [FMA:83895] synonym: "stratum pyramidale" EXACT [NIF_GrossAnatomy:birnlex_1444] synonym: "stratum pyramidale hippocampi" EXACT [NIF_GrossAnatomy:birnlex_1444] xref: BTO:0001066 xref: FMA:83895 xref: MA:0000956 xref: NIF_GrossAnatomy:birnlex_1444 is_a: UBERON:0002305 ! layer of hippocampus [Term] id: UBERON:0002314 name: midbrain tectum alt_id: UBERON:FMA_83902-MA_0000211 def: "Dorsal part of the midbrain, consisting of the superior and inferior colliculi and the pretectal nuclei [MM, NIF]. The tectum is a region of the brain, specifically the dorsal part of the mesencephalon (midbrain). This is contrasted with the tegmentum, which refers to the region ventral to the ventricular system. It is derived in embryonic development from the alar plate of the neural tube. [WP,unvetted]." [NIF_GrossAnatomy:birnlex_1032, Wikipedia:Midbrain_tectum] comment: In adult humans it is present only in the mesencephalon as the inferior and the superior colliculi[WP]. subset: uberon_slim synonym: "mesencephalic tectum" EXACT [ZFA:0000445] synonym: "neuraxis tectum" EXACT [] synonym: "tectum" EXACT [] synonym: "tectum mesencephali" EXACT [BTO:0001793] xref: BM:MB-Tec xref: BTO:0001793 xref: EFO:0000920 xref: EMAPA:19051 xref: FMA:83902 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cf/Gray685.png/200px-Gray685.png xref: MA:0000211 xref: MAT:0000451 xref: ncithesaurus:Tectum_Mesencephali xref: NIF_GrossAnatomy:birnlex_1032 xref: OG:0001388 xref: SCTID:362394008 is_a: UBERON:0002950 ! regional part of midbrain relationship: develops_from UBERON:0005882 ! alar plate relationship: part_of UBERON:0001891 ! midbrain [Term] id: UBERON:0002315 name: gray matter of spinal cord alt_id: UBERON:FMA_83926-MA_0000002 def: "the ridge-shaped grey matter of the spinal cord that extends longitudunally through the center of each half of the spinal cord, and are largely or entirely composed of nerve cell bodies and their dendrites and some supportive tissue." [MP:0008503] synonym: "gray matter of neuraxis of spinal cord" EXACT [OBOL:automatic] synonym: "grey matter of spinal cord" EXACT [] synonym: "grey substance of spinal cord" EXACT [] synonym: "spinal cord gray matter" EXACT [OBOL:automatic] synonym: "spinal cord gray matter of neuraxis" EXACT [OBOL:automatic] synonym: "spinal cord grey matter" EXACT [] synonym: "spinal cord grey substance" EXACT [OBOL:automatic] xref: FMA:256580 xref: MA:0000002 xref: ncithesaurus:Gray_Matter_of_the_Spinal_Cord xref: NIF_GrossAnatomy:nlx_anat_100204 xref: SCTID:279441003 is_a: UBERON:0002020 ! gray matter of neuraxis relationship: part_of UBERON:0002240 intersection_of: UBERON:0002020 ! gray matter of neuraxis intersection_of: part_of UBERON:0002240 ! spinal cord relationship: part_of UBERON:0002240 ! spinal cord [Term] id: UBERON:0002316 name: white matter alt_id: UBERON:FMA_83929-MA_0001135 def: "Heterogeneous cluster of neurites in the brain and the spinal cord." [Wikipedia:White_matter] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "white matter of neuraxis" EXACT [FMA:83929] synonym: "white substance" EXACT [] xref: AEO:0000139 xref: FMA:83929 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d2/Spinal_nerve.svg/200px-Spinal_nerve.svg.png xref: MA:0001135 xref: ncithesaurus:White_Matter xref: NIF_GrossAnatomy:Class_2 xref: OpenCyc:Mx4rwOAsDZwpEbGdrcN5Y29ycA xref: ZFA:0001682 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001017 ! central nervous system [Term] id: UBERON:0002317 name: white matter of cerebellum alt_id: UBERON:FMA_83943-MA_0002430 comment: note that in NIF this is a composite structure; in MA and FMA it is explicitly part of cerebellum. This leads to consistency problems with strict parcellation schemes like ABA, see cerebellar peduncles. In NIF this is a composite structure, this is followed partially here in weakening the relationship to overlaps subset: vertebrate_core synonym: "cerebellar white matter" EXACT [] synonym: "cerebellum white matter" EXACT [] xref: FMA:83943 xref: MA:0002430 xref: ncithesaurus:Cerebellum_White_Matter xref: NIF_GrossAnatomy:birnlex_1562 xref: SCTID:362412009 xref: ZFA:0001708 is_a: UBERON:0002316 ! white matter relationship: overlaps UBERON:0002037 {source="FMA-weakened", source="MA-weakened"} ! cerebellum [Term] id: UBERON:0002318 name: white matter of spinal cord alt_id: UBERON:FMA_83945-MA_0000910 def: "the regions of the spinal cord that are largely or entirely composed of myelinated nerve cell axons and contain few or no neural cell bodies or dendrites." [MP:0008027] comment: This class was created automatically from a combination of ontologies synonym: "spinal cord white matter" EXACT [] synonym: "spinal cord white matter of neuraxis" EXACT [OBOL:automatic] synonym: "spinal cord white substance" EXACT [OBOL:automatic] synonym: "white matter of neuraxis of spinal cord" EXACT [OBOL:automatic] synonym: "white substance of spinal cord" EXACT [OBOL:automatic] xref: FMA:83945 xref: MA:0000910 xref: ncithesaurus:White_Matter_of_the_Spinal_Cord xref: SCTID:279436006 is_a: UBERON:0002316 ! white matter relationship: part_of UBERON:0002240 intersection_of: UBERON:0002316 ! white matter intersection_of: part_of UBERON:0002240 ! spinal cord relationship: part_of UBERON:0002240 ! spinal cord [Term] id: UBERON:0002319 name: mesangium alt_id: UBERON:FMA_84139-MA_0002617 def: "inner layer of the glomerulus, within the basement membrane surrounding the glomerular capillaries." [http://sourceforge.net/tracker/?group_id=76834&atid=974957, Wikipedia:Mesangium] comment: WP considers this the same as glomerular mesangium. In MA, glomerular and extraglomerular are distingsuished. subset: uberon_slim xref: BTO:0002494 xref: EMAPA:28248 xref: FMA:84139 xref: MA:0002617 xref: MESH:A.05.810.453.736.520.380 xref: ncithesaurus:Mesangium is_a: UBERON:0003567 ! implied link automatically realized ! abdomen connective tissue is_a: UBERON:0003891 ! stroma is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0000074 ! renal glomerulus relationship: part_of UBERON:0005215 ! kidney interstitium [Term] id: UBERON:0002320 name: glomerular mesangium alt_id: UBERON:FMA_84140-MA_0002606 def: "A thin membrane which helps to support the capillary loops in a renal glomerulus. It is connective tissue composed of mesangial cells - myofibroblasts phenotypically related to vascular smooth muscle cells (MUSCLE, SMOOTH, VASCULAR), PHAGOCYTES and the mesangial EXTRACELLULAR MATRIX." [MESH:A.05.810.453.736.520.380, Wikipedia:Glomerular_mesangium] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: EMAPA:27961 xref: EMAPA:28248 xref: FMA:84140 xref: GAID:430 xref: MA:0002606 xref: MESH:A.05.810.453.736.520.380 xref: SCTID:244574009 is_a: UBERON:0003567 ! implied link automatically realized ! abdomen connective tissue is_a: UBERON:0003891 ! stroma is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0002319 ! mesangium relationship: part_of UBERON:0004190 {source="GO"} ! glomerulus vasculature [Term] id: UBERON:0002321 name: extraglomerular mesangium alt_id: UBERON:FMA_84141-MA_0002602 comment: editor note - check MA part_ofs - should be spatially disjoint from renal glomerulus? xref: EMAPA:28278 xref: FMA:84141 xref: MA:0002602 is_a: UBERON:0003567 ! implied link automatically realized ! abdomen connective tissue is_a: UBERON:0003891 ! stroma is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: overlaps UBERON:0000074 ! renal glomerulus relationship: part_of UBERON:0001229 {source="MA"} ! renal corpuscle relationship: part_of UBERON:0002303 {source="MA"} ! juxtaglomerular apparatus relationship: part_of UBERON:0002319 {source="MA"} ! mesangium [Term] id: UBERON:0002322 name: periventricular nucleus alt_id: UBERON:FMA_84354-ZFA_0000260 def: "." [Wikipedia:Periventricular_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "ventral zone of periventricular hypothalamus" EXACT [ZFA:0000260] xref: FMA:84354 xref: TAO:0000260 xref: ZFA:0000260 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002323 name: body cavity alt_id: UBERON:0000169 alt_id: UBERON:FMA_85006-MA_0002447-ZFA_0001438 def: "fluid-filled space between epidermis and outer lining of gut cavity[WP]. In mammals it forms the peritoneal, pleural, and pericardial cavities." [Wikipedia:Body_cavity] comment: editor note: check the FMA placement here; add developmental relationships; check EHDAA2 subset: uberon_slim subset: vertebrate_core synonym: "celom" RELATED [BTO:0001707] synonym: "coelom" EXACT [] synonym: "coelome" RELATED [BTO:0001707] synonym: "coelomic cavity" EXACT [] synonym: "coelomic cavity" EXACT [EHDAA2:0000267] synonym: "hemocoel" RELATED [FBbt:00005060] synonym: "space of body compartment" EXACT [FMA:85006] synonym: "ventral body cavity" NARROW [] xref: AEO:0000186 xref: BTO:0001707 xref: EHDAA2:0000267 xref: EHDAA2:0003186 xref: FBbt:00005060 xref: FMA:85006 xref: galen:BodyCavity xref: MA:0002447 xref: ncithesaurus:Cavity xref: SCTID:361348008 xref: TAO:0001438 xref: ZFA:0001438 is_a: UBERON:0002553 ! anatomical cavity is_a: UBERON:0004458 ! implied link automatically realized ! body cavity or lining [Term] id: UBERON:0002324 name: muscle of back alt_id: UBERON:FMA_85216-MA_0000496 def: "A muscle organ that is part of a back [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "back muscle" EXACT [] synonym: "back muscle organ" EXACT [OBOL:automatic] synonym: "muscle organ of back" EXACT [OBOL:automatic] xref: FMA:85216 xref: MA:0000496 is_a: UBERON:0001774 ! muscle of trunk is_a: UBERON:0005174 ! implied link automatically realized ! back organ relationship: part_of UBERON:0001137 intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0001137 ! back relationship: part_of UBERON:0001137 ! back [Term] id: UBERON:0002325 name: epithelium of urethra alt_id: UBERON:FMA_85275-MA_0001686 def: "The urethra is a renal system organ that carries urine from the bladder to outside the body. The epithelium is the tubular, planar layer of cells through which the urine passes.." [GO:0061071] comment: This class was created automatically from a combination of ontologies synonym: "epithelial tissue of urethra" EXACT [OBOL:automatic] synonym: "urethra epithelial tissue" EXACT [OBOL:automatic] synonym: "urethra epithelium" EXACT [] synonym: "urethral epithelium" RELATED [] xref: FMA:85275 xref: MA:0001686 xref: ncithesaurus:Urethra_Epithelium is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003914 {source="GO"} ! epithelial tube is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0006555 ! implied link automatically realized ! excretory tube relationship: part_of UBERON:0000057 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000057 ! urethra [Term] id: UBERON:0002326 name: lamina propria of urethra alt_id: UBERON:FMA_85276-MA_0001689 def: "A lamina propria that is part of a urethra [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "lamina propria mucosa of urethra" EXACT [OBOL:automatic] synonym: "lamina propria mucosae of urethra" EXACT [OBOL:automatic] synonym: "urethra lamina propria" EXACT [] synonym: "urethra lamina propria mucosa" EXACT [OBOL:automatic] synonym: "urethra lamina propria mucosae" EXACT [OBOL:automatic] synonym: "urethral lamina propria" RELATED [] xref: FMA:85276 xref: MA:0001689 is_a: UBERON:0000030 ! lamina propria is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0000057 intersection_of: UBERON:0000030 ! lamina propria intersection_of: part_of UBERON:0000057 ! urethra relationship: part_of UBERON:0001008 ! excretory system [Term] id: UBERON:0002327 name: trunk of intercostal nerve alt_id: UBERON:FMA_85315-MA_0001176 comment: This class was created automatically from a combination of ontologies synonym: "intercostal nerve trunk" EXACT [] synonym: "intercostal neural trunk" EXACT [] xref: FMA:85315 xref: MA:0001176 is_a: UBERON:0001147 ! trunk of peripheral nerve [Term] id: UBERON:0002328 name: notochord alt_id: UBERON:FMA_85521-XAO_0000055-ZFA_0000135 def: "Avascular multi-tissue structure composed of large vacuolated epithelial cells (chordablasts) and perichordal fibrous tissue[VAO]. The notochord is an elongate, rod-like, skeletal structure dorsal to the gut tube and ventral to the nerve cord. The notochord should not be confused with the backbone or vertebral column of most adult vertebrates. The notochord appears early in embryogeny and plays an important role in promoting or organizing the embryonic development of nearby structures. In most adult chordates the notochord disappears or becomes highly modified. In some non-vertebrate chordates and fishes the notochord persists as a laterally flexible but incompressible skeletal rod that prevents telescopic collapse of the body during swimming[TOLWEB]." [http://tolweb.org/Chordata/2499, https://github.com/cmungall/uberon/issues/25, ISBN:0815318960, NLM:notochord, VAO:0000032, Wikipedia:Notochord, ZFIN:curator] comment: Some organisms retain a post-embryonic notochord subset: uberon_slim subset: vertebrate_core synonym: "embryonic notocord" EXACT [] synonym: "notocord" EXACT [ZFA:0000135] xref: AAO:0000327 xref: BTO:0001768 xref: EHDAA:1241 xref: EHDAA:6021 xref: EHDAA2:0001277 xref: EMAPA:16191 xref: EV:0100002 xref: FMA:85521 xref: GAID:1311 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray19_with_color.png/200px-Gray19_with_color.png xref: MAT:0000281 xref: MESH:A.16.254.610 xref: ncithesaurus:Notochord xref: OG:0000199 xref: SCTID:308820002 xref: TAO:0000135 xref: VAO:0000032 xref: XAO:0000055 xref: ZFA:0000135 is_a: UBERON:0000481 {source="VAO"} ! multi-tissue structure is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: develops_from UBERON:0004880 ! chordamesoderm relationship: dorsal_to UBERON:0001049 ! neural tube relationship: ventral_to UBERON:0001555 ! digestive tract [Term] id: UBERON:0002329 name: somite alt_id: UBERON:FMA_85522-MIAA_0000068-XAO_0000058-ZFA_0000155 def: "A segmental mass of mesoderm in the vertebrate embryo, occurring in pairs along the notochord and developing into muscles and vertebrae[BTO]. Portion of mesoderm distributed along the two sides of the neural tube and that will eventually become dermis (dermatome), skeletal muscle (myotome), and vertebrae (sclerotome)[WP]. In Zebrafish: Any of the approximately 45 bilaterally paired blocks of mesoderm cells, lying on either side of the notochord and neural tube, and forming sequentially starting at the head during development of the embryo. Together they give rise to the axial skeleton (from the sclerotome), associated musculature (from the myotome), and dermis (from the dermatome). // Undifferentiated mesodermal components of early trunk or tail segments or metameres, derived from paraxial mesoderm; forms myotomes, sclerotomes and perhaps dermatomes. Kimmel et al, 1995." [BTO:0001558, OMD:somite, Wikipedia:Somite, XB:curator, ZFIN:curator] subset: uberon_slim subset: vertebrate_core synonym: "mesodermal cluster" EXACT [GO:0001756] synonym: "somites" RELATED [] synonym: "somitic mesoderm" RELATED [] xref: AAO:0010569 xref: BTO:0001558 xref: EHDAA:366 xref: EHDAA:699 xref: EHDAA2:0003436 xref: FMA:85522 xref: GAID:1306 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray19_with_color.png/200px-Gray19_with_color.png xref: MAT:0000068 xref: MESH:A.16.254.425.660.750 xref: MIAA:0000068 xref: ncithesaurus:Somite xref: OG:0000191 xref: TAO:0000155 xref: XAO:0000058 xref: ZFA:0000155 is_a: UBERON:0000914 ! organismal segment is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0005423 ! developing anatomical structure relationship: develops_from UBERON:0003059 ! presomitic mesoderm relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0000926 ! mesoderm [Term] id: UBERON:0002330 name: exocrine system alt_id: UBERON:FMA_85539-MA_0002411 def: "Anatomical system that consists of the glands and parts of glands that produce exocrine secretions and help to integrate and control bodily metabolic activity. Exocrine glands are glands that secrete their products (hormones) into ducts (duct glands). They are the counterparts to endocrine glands, which secrete their products (hormones) directly into the bloodstream (ductless glands) or release hormones (paracrines) that affect only target cells nearby the release site. [Wikipedia]." [Wikipedia:Exocrine_system] subset: uberon_slim synonym: "exocrine glandular system" EXACT [EHDAA2:0002225] xref: EHDAA2:0002225 xref: FMA:85539 xref: MA:0002411 xref: ncithesaurus:Exocrine_System is_a: UBERON:0000467 ! anatomical system disjoint_from: UBERON:0000949 ! endocrine system disjoint_from: UBERON:0000990 ! reproductive system disjoint_from: UBERON:0001004 ! respiratory system disjoint_from: UBERON:0001007 ! digestive system disjoint_from: UBERON:0001008 ! excretory system disjoint_from: UBERON:0001009 ! circulatory system disjoint_from: UBERON:0001016 ! nervous system disjoint_from: UBERON:0001033 ! gustatory system disjoint_from: UBERON:0001434 ! skeletal system disjoint_from: UBERON:0002204 ! musculoskeletal system disjoint_from: UBERON:0002294 ! biliary system disjoint_from: UBERON:0002390 ! hematopoietic system disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system [Term] id: UBERON:0002331 name: umbilical cord alt_id: UBERON:FMA_85541-MIAA_0000280 def: "The connecting cord from the developing embryo or fetus to the placenta. During prenatal development, the umbilical cord comes from the same zygote as the fetus and (in humans) normally contains two arteries (the umbilical arteries) and one vein (the umbilical vein), buried within Wharton's jelly. The umbilical vein supplies the fetus with oxygenated, nutrient-rich blood from the placenta. Conversely, the umbilical arteries return the deoxygenated, nutrient-depleted blood[WP]." [Wikipedia:Umbilical_cord] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "birth cord" RELATED [Wikipedia:Umbilical_cord] synonym: "connecting stalk" RELATED [] synonym: "yolk stalk" RELATED [BTO:0001415] xref: BTO:0001415 xref: EFO:0001415 xref: EHDAA:158 xref: EHDAA2:0000312 xref: EMAPA:26115 xref: EV:0100127 xref: FMA:85541 xref: GAID:517 xref: MAT:0000280 xref: MESH:A.16.254.789 xref: MIAA:0000280 xref: ncithesaurus:Umbilical_Cord xref: OpenCyc:Mx4rvyewDJwpEbGdrcN5Y29ycA xref: SCTID:280644003 is_a: UBERON:0000478 ! extraembryonic structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: develops_from UBERON:0007806 ! connecting stalk [Term] id: UBERON:0002333 name: pulmonary trunk alt_id: UBERON:FMA_8612-MA_0002033 def: "Pulmonary arterial trunk which is continuous with the right ventricle.[FMA]" [FMA:FMA, Wikipedia:Pulmonary_trunk] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "pulmonary artery (trunk)" EXACT [] synonym: "trunk of pulmonary arterial tree" EXACT [] xref: EFO:0001399 xref: EHDAA:9831 xref: EHDAA2:0001576 xref: EMAPA:17015 xref: EMAPA:18240 xref: FMA:8612 xref: galen:PulmonaryTrunk xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Alveoli_diagram.png/200px-Alveoli_diagram.png xref: MA:0002033 xref: OG:0001134 xref: OpenCyc:Mx4rv-6d0ZwpEbGdrcN5Y29ycA is_a: UBERON:0000063 ! organ segment relationship: continuous_with UBERON:0002080 ! heart right ventricle relationship: part_of UBERON:0001009 ! circulatory system [Term] id: UBERON:0002334 name: submandibular duct alt_id: UBERON:FMA_86266-MA_0002698 def: "The submandibular duct (Wharton's duct, submaxillary duct) is one of the salivary ducts. It is about 5 cm. long, and its wall is much thinner than that of the parotid duct. It begins by numerous branches from the deep surface of the gland, and runs forward between the mylohyoideus, hyoglossus, and genioglossus, then between the sublingual gland and the genioglossus, and opens by a narrow orifice on the summit of a small at the side of the frenulum linguæ. On the hyoglossus it lies between the lingual and hypoglossal nerves, but at the anterior border of the muscle it is crossed laterally by the lingual nerve; the terminal branches of the lingual nerve ascend on its medial side. It drains saliva from the submandibular glands and sublingual glands to the sublingual caruncle at the base of the tongue. It was initially described by the English anatomist Thomas Wharton and sometimes referred to by his name. [WP,unvetted]." [Wikipedia:Submandibular_duct] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: BTO:0004556 xref: FMA:86266 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Gray1024.png/200px-Gray1024.png xref: MA:0002698 xref: ncithesaurus:Submandibular_Duct is_a: UBERON:0001837 ! duct of salivary gland relationship: part_of UBERON:0001736 ! submandibular gland [Term] id: UBERON:0002335 name: macula densa alt_id: UBERON:FMA_86333-MA_0002603 def: "The macula densa is an area of specialized cells in the distal tubule that makes contact with the vascular pole of the glomerulus[GO].." [GO:0072024, Wikipedia:Macula_densa] subset: uberon_slim xref: BTO:0003940 xref: FMA:86333 xref: MA:0002603 xref: ncithesaurus:Macula_Densa xref: SCTID:244657003 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002303 {source="MA"} ! juxtaglomerular apparatus [Term] id: UBERON:0002336 name: corpus callosum alt_id: UBERON:FMA_86464-MA_0000188-MIAA_0000286 def: "The corpus callosum is a thick bundle of nerve fibers comprising a commissural plate connecting the two cerebral hemispheres. It consists of contralateral axon projections that provides communications between the right and left cerebral hemispheres[GO]." [Wikipedia:Corpus_callosum] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: BM:Tel-CC xref: BTO:0000615 xref: EFO:0001390 xref: EV:0100305 xref: FMA:86464 xref: GAID:683 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/aa/Gray733.png/200px-Gray733.png xref: MA:0000188 xref: MAT:0000286 xref: MESH:A.08.186.211.730.885.362 xref: MIAA:0000286 xref: ncithesaurus:Corpus_Callosum xref: NIF_GrossAnatomy:birnlex_1087 xref: OpenCyc:Mx4rvbNzdZwpEbGdrcN5Y29ycA xref: SCTID:362354006 is_a: UBERON:0002473 ! intercerebral commissure is_a: UBERON:0005340 ! dorsal telencephalic commissure [Term] id: UBERON:0002337 name: endometrial stroma alt_id: UBERON:FMA_86487-MA_0002734 comment: This class was created automatically from a combination of ontologies synonym: "endometrium stroma" EXACT [] synonym: "stroma of endometrium" EXACT [] xref: FMA:86487 xref: MA:0002734 xref: ncithesaurus:Endometrial_Stroma xref: SCTID:254115004 is_a: UBERON:0003891 ! stroma is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0001295 ! endometrium [Term] id: UBERON:0002338 name: lamina propria of bronchus alt_id: UBERON:FMA_86619-MA_0001836 def: "A lamina propria that is part of a bronchus [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "bronchi lamina propria" EXACT [OBOL:automatic] synonym: "bronchi lamina propria mucosa" EXACT [OBOL:automatic] synonym: "bronchi lamina propria mucosae" EXACT [OBOL:automatic] synonym: "bronchial trunk lamina propria" EXACT [OBOL:automatic] synonym: "bronchial trunk lamina propria mucosa" EXACT [OBOL:automatic] synonym: "bronchial trunk lamina propria mucosae" EXACT [OBOL:automatic] synonym: "bronchus lamina propria" EXACT [] synonym: "bronchus lamina propria mucosa" EXACT [OBOL:automatic] synonym: "bronchus lamina propria mucosae" EXACT [OBOL:automatic] synonym: "lamina propria mucosa of bronchi" EXACT [OBOL:automatic] synonym: "lamina propria mucosa of bronchial trunk" EXACT [OBOL:automatic] synonym: "lamina propria mucosa of bronchus" EXACT [OBOL:automatic] synonym: "lamina propria mucosae of bronchi" EXACT [OBOL:automatic] synonym: "lamina propria mucosae of bronchial trunk" EXACT [OBOL:automatic] synonym: "lamina propria mucosae of bronchus" EXACT [OBOL:automatic] synonym: "lamina propria of bronchi" EXACT [OBOL:automatic] synonym: "lamina propria of bronchial trunk" EXACT [OBOL:automatic] xref: FMA:86619 xref: MA:0001836 xref: ncithesaurus:Bronchus_Lamina_Propria is_a: UBERON:0000030 ! lamina propria is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure is_a: UBERON:0004779 ! implied link automatically realized ! respiratory system lamina propria relationship: part_of UBERON:0002185 intersection_of: UBERON:0000030 ! lamina propria intersection_of: part_of UBERON:0002185 ! bronchus relationship: part_of UBERON:0002185 ! bronchus [Term] id: UBERON:0002339 name: epithelium of lobar bronchus alt_id: UBERON:FMA_86624-MA_0001842 def: "the tissue made up of epithelial cells that lines the inside of the lobar bronchus." [GO:0060481] synonym: "epithelial tissue of lobar bronchus" EXACT [OBOL:automatic] synonym: "epithelial tissue of secondary bronchus" EXACT [OBOL:automatic] synonym: "epithelium of secondary bronchus" EXACT [OBOL:automatic] synonym: "lobar bronchial epithelium" EXACT [] synonym: "lobar bronchus epithelial tissue" EXACT [OBOL:automatic] synonym: "lobar bronchus epithelium" EXACT [] synonym: "secondary bronchus epithelial tissue" EXACT [OBOL:automatic] synonym: "secondary bronchus epithelium" EXACT [OBOL:automatic] xref: EMAPA:17390 xref: EMAPA:17658 xref: EMAPA:17666 xref: EMAPA:17984 xref: EMAPA:17989 xref: EMAPA:17994 xref: EMAPA:18000 xref: FMA:86624 xref: MA:0001842 is_a: UBERON:0000115 ! implied link automatically realized ! lung epithelium is_a: UBERON:0002031 ! implied link automatically realized ! epithelium of bronchus relationship: part_of UBERON:0002183 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002183 ! lobar bronchus [Term] id: UBERON:0002340 name: epithelium of main bronchus alt_id: UBERON:0003245 alt_id: UBERON:FMA_86625-MA_0001847 def: "An epithelium that is part of a main bronchus [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "bronchus principalis epithelial tissue" EXACT [OBOL:automatic] synonym: "bronchus principalis epithelium" EXACT [OBOL:automatic] synonym: "epithelial tissue of bronchus principalis" EXACT [OBOL:automatic] synonym: "epithelial tissue of main bronchus" EXACT [OBOL:automatic] synonym: "epithelial tissue of primary bronchus" EXACT [OBOL:automatic] synonym: "epithelial tissue of principal bronchus" EXACT [OBOL:automatic] synonym: "epithelium of bronchus principalis" EXACT [OBOL:automatic] synonym: "epithelium of primary bronchus" EXACT [OBOL:automatic] synonym: "epithelium of principal bronchus" EXACT [OBOL:automatic] synonym: "main bronchial epithelium" EXACT [] synonym: "main bronchus epithelial tissue" EXACT [OBOL:automatic] synonym: "main bronchus epithelium" EXACT [] synonym: "primary bronchus epithelial tissue" EXACT [OBOL:automatic] synonym: "primary bronchus epithelium" EXACT [OBOL:automatic] synonym: "principal bronchus epithelial tissue" EXACT [OBOL:automatic] synonym: "principal bronchus epithelium" EXACT [OBOL:automatic] xref: EHDAA:5003 xref: EHDAA2:0001047 xref: EMAPA:16851 xref: FMA:86625 xref: MA:0001847 xref: OG:0001034 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002031 ! epithelium of bronchus relationship: part_of UBERON:0002182 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002182 ! main bronchus relationship: part_of UBERON:0002182 ! main bronchus [Term] id: UBERON:0002341 name: epithelium of segmental bronchus alt_id: UBERON:FMA_86626-MA_0001850 def: "An epithelium that is part of a segmental bronchus [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "epithelial tissue of segmental bronchus" EXACT [OBOL:automatic] synonym: "epithelial tissue of tertiary bronchus" EXACT [OBOL:automatic] synonym: "epithelium of tertiary bronchus" EXACT [OBOL:automatic] synonym: "segmental bronchial epithelium" EXACT [] synonym: "segmental bronchus epithelial tissue" EXACT [OBOL:automatic] synonym: "segmental bronchus epithelium" EXACT [] synonym: "tertiary bronchus epithelial tissue" EXACT [OBOL:automatic] synonym: "tertiary bronchus epithelium" EXACT [OBOL:automatic] xref: FMA:86626 xref: MA:0001850 is_a: UBERON:0000115 ! implied link automatically realized ! lung epithelium is_a: UBERON:0002031 ! epithelium of bronchus relationship: part_of UBERON:0002184 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002184 ! segmental bronchus relationship: part_of UBERON:0002184 ! segmental bronchus [Term] id: UBERON:0002342 name: neural crest alt_id: UBERON:FMA_86666-MIAA_0000066-XAO_0000048-ZFA_0000045 def: "The neural crest, a transient component of the ectoderm, is located in between the neural tube and the epidermis (or the free margins of the neural folds) of an embryo during neural tube formation. Neural crest cells quickly migrate during or shortly after neurulation, an embryological event marked by neural tube closure." [Wikipedia:Neural_crest] comment: Editor note: consider including subclasses for pre- and post- migratory. Taxon notes: A well developed neural crest population is present in lampreys (Horigome et al. 1999 ; Tomsa & Langeland, 1999) and gnathostomes. chordate fos- sils from the early Cambrian (Yunnanozoan and Haikouella) with apparent neural-crest derived struc- tures (pharyngeal denticles and pharyngeal skeletons resembling the striped mucocartilage of the branchial bars in lamprey ammocoete larvae), suggests that neural crest arose very early in vertebrate evolution (Chen et al. 1999; Holland & Chen, 2001). The invertebrate chordates apparently lack defini- tive neural crest. One marker of migrating neural crest in some vertebrates, the antibody HNK1, does not recognize any cells in amphioxus embryos (Holland, unpublished). Even so, in both amphioxus and tunicates, cells at the edges of the neural plate and adjacent nonneural ectoderm share some properties of neural crest[PMID:11523831]. Gene notes: Many factors and genes, such as Pax3 (Tremblay et al., 1995), slug (Nieto et al., 1994), AP-2 (Zhang et al., 1996; Schorle et al., 1996), and Wnt-1/3a (Ikeya et al., 1997) are expressed in the dorsal most region of the neural tube, and have been shown to be involved in the generation of neural crest cells. subset: uberon_slim subset: vertebrate_core xref: AAO:0010578 xref: BTO:0001764 xref: FMA:86666 xref: GAID:1310 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5f/Gray644.png/200px-Gray644.png xref: MAT:0000066 xref: MESH:A.16.254.600 xref: MIAA:0000066 xref: ncithesaurus:Neural_Crest xref: OG:0000057 xref: SCTID:361462002 xref: TAO:0000045 xref: XAO:0000048 xref: ZFA:0000045 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: develops_from UBERON:0003075 {source="BTO"} ! neural plate relationship: develops_from UBERON:0005062 {source="PMID:11523831"} ! neural fold relationship: existence_starts_during UBERON:0000110 {source="PMID:11523831"} ! neurula stage relationship: part_of UBERON:0002346 {source="XAO"} ! neural ectoderm [Term] id: UBERON:0002343 name: abdomen musculature alt_id: UBERON:FMA_86917-ZFA_0001327 def: "Set of all muscles in abdomen." [OBOL:automatic] comment: note distinction between abdomen muscle and abdomen musculature subset: vertebrate_core synonym: "abdominal musculature" EXACT [] synonym: "muscle group of abdomen" EXACT [FMA:71294] synonym: "muscles of abdomen" EXACT [FMA:71294] synonym: "musculature of abdomen" EXACT [] synonym: "musculature of abdominal wall" EXACT [FMA:86917] xref: FMA:71294 xref: FMA:86917 xref: TAO:0001327 xref: ZFA:0001327 is_a: UBERON:0001015 ! musculature is_a: UBERON:0004479 ! implied link automatically realized ! musculature of trunk relationship: part_of UBERON:0000916 intersection_of: UBERON:0001015 ! musculature intersection_of: part_of UBERON:0000916 ! abdomen [Term] id: UBERON:0002345 name: descending thoracic aorta alt_id: UBERON:FMA_87217-MA_0002572 def: "the part of the aorta that extends from the arch of the aorta to the diaphragm, and from which arises numerous branches that supply oxygenated blood to the chest cage and the organs within the chest." [MP:0009868] comment: This class was created automatically from a combination of ontologies xref: EFO:0002527 xref: EMAPA:18605 xref: FMA:87217 xref: MA:0002572 xref: SCTID:181301002 is_a: UBERON:0000063 ! organ segment is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001514 ! descending aorta relationship: part_of UBERON:0001515 ! thoracic aorta [Term] id: UBERON:0002346 name: neural ectoderm alt_id: UBERON:FMA_87657-MIAA_0000176-XAO_0000042-ZFA_0001120 def: "Embryonic ectoderm that gives rise to nervous tissue." [NLM:neuroectoderm, Wikipedia:Neuroectoderm] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "neuaral ectoderm" RELATED [] synonym: "neurectoderm" EXACT [] synonym: "neuroectoderm" EXACT [] synonym: "presumptive central nervous system" RELATED [] xref: AAO:0000469 xref: BILA:0000039 xref: EHDAA:1498 xref: EHDAA:255 xref: EHDAA2:0001248 xref: EMAPA:16073 xref: EV:0100004 xref: FBbt:00001061 xref: FMA:87657 xref: MAT:0000176 xref: MIAA:0000176 xref: ncithesaurus:Neuroectoderm xref: OG:0000150 xref: TAO:0001120 xref: XAO:0000042 xref: ZFA:0001120 is_a: UBERON:0000923 ! germ layer relationship: part_of UBERON:0000924 ! ectoderm [Term] id: UBERON:0002347 name: thoracic vertebra alt_id: UBERON:FMA_9139-MA_0000314 def: "In humans, the 12 thoracic vertebrae compose the middle segment of the vertebral column, between the cervical vertebrae and the lumbar vertebrae. They are intermediate in size between those of the cervical and lumbar regions; they increase in size as one proceeds down the spine, the upper vertebrae being much smaller than those in the lower part of the region. They are distinguished by the presence of facets on the sides of the bodies for articulation with the heads of the ribs, and facets on the transverse processes of all, except the eleventh and twelfth, for articulation with the tubercles of the ribs. [WP,unvetted]." [Wikipedia:Thoracic_vertebra] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "dorsal vertebra" EXACT [] synonym: "thorax vertebra" EXACT [OBOL:automatic] synonym: "vertebra of thorax" EXACT [OBOL:automatic] synonym: "vertebra thoracica" EXACT [] xref: EMAPA:18011 xref: FMA:9139 xref: GAID:244 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d2/Gray90.png/200px-Gray90.png xref: MA:0000314 xref: MESH:A.02.835.232.834.892 xref: ncithesaurus:Thoracic_Vertebra xref: OpenCyc:Mx4rvdZIBpwpEbGdrcN5Y29ycA xref: SCTID:181821009 is_a: UBERON:0002412 ! implied link automatically realized ! vertebra is_a: UBERON:0003827 ! implied link automatically realized ! thoracic segment bone relationship: part_of UBERON:0006073 intersection_of: UBERON:0002412 ! vertebra intersection_of: part_of UBERON:0006073 ! thoracic region of vertebral column relationship: part_of UBERON:0000915 ! thoracic segment of trunk [Term] id: UBERON:0002348 name: epicardium alt_id: UBERON:FMA_9461-XAO_0000316-ZFA_0005057 def: "Region of visceral serous pericardium which has as its part, the mesothelium, subepicardial layer of epicardium and the fibroelastic connective tissue that is attached to the myocardium and is continuous with the parietal serous pericardium[FMA]. External layer of the heart[ZFA]." [Wikipedia:Epicardium, ZFIN:curator] comment: TODO - check links with UBERON:0002425 visceral serous pericardium. develops from proepicardium. WP:Epicardium -- When considered as a part of the pericardium, it is the inner layer, or visceral pericardium, continuous with the serous layer. subset: uberon_slim subset: vertebrate_core synonym: "heart epicardium" EXACT [] synonym: "visceral serous pericardium of heart" EXACT [] synonym: "visceral serous pericardium proper" EXACT [FMA:9461] xref: AAO:0010409 xref: EHDAA2:0002202 xref: FMA:9461 xref: galen:Epicardium xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray968.png/200px-Gray968.png xref: ncithesaurus:Epicardium xref: OG:0000119 xref: TAO:0005057 xref: XAO:0000316 xref: ZFA:0005057 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: develops_from UBERON:0004160 ! proepicardium relationship: part_of UBERON:0000948 ! heart relationship: part_of UBERON:0002425 ! visceral serous pericardium [Term] id: UBERON:0002349 name: myocardium alt_id: UBERON:FMA_9462-MA_0000164-XAO_0000065-ZFA_0001319 def: "middle muscular layer of the heart wall[M-W]. Muscle layer of organ which has as its parts the myocardium proper and the conducting system of the heart[FMA]." [Wikipedia:Myocardium] comment: TODO - check 'Myocardum proper' in FMA. We superclass the more generic class for now. FMA has is_a muscle layer - should we add this? ZFA and BTO both have is_a 'cardiac muscle' (tissue?). But in U we also follow FMA and have cardiac muscle tissue of myocardium (there is also Fibrocollagenous connective tissue of myocardium), which would be identical (see issue-10). Note that GO also treats left/right ventricular cardiac muscle tissue synonymous with ventricular myocardium subset: uberon_slim subset: vertebrate_core synonym: "cardiac muscle" RELATED [ZFA:0001319] synonym: "heart muscle " RELATED [ZFA:0001319] synonym: "heart myocardium" EXACT [] synonym: "muscle of heart" EXACT [FMA:9462] xref: AAO:0010410 xref: BTO:0000901 xref: EFO:0000819 xref: EHDAA2:0001220 xref: EHDAA2:0004150 xref: EV:0100022 xref: FMA:9462 xref: GAID:173 xref: galen:Myocardium xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6e/Glanzstreifen.jpg/200px-Glanzstreifen.jpg xref: MA:0000164 xref: MAT:0000453 xref: MESH:A.02.633.580 xref: ncithesaurus:Myocardium xref: OG:0000083 xref: OpenCyc:Mx4ro36AFrCvEduAAAAOpmP6tw xref: SCTID:362012001 xref: TAO:0001319 xref: XAO:0000065 xref: ZFA:0001319 is_a: UBERON:0005983 ! heart layer relationship: part_of UBERON:0000383 ! musculature of body relationship: part_of UBERON:0000948 ! heart [Term] id: UBERON:0002350 name: conducting system of heart alt_id: UBERON:FMA_9476-ZFA_0005063 def: " The cardiac conduction system consists of specialized cardiomyocytes that regulate the frequency of heart beat[GO]" [GO:0003161] subset: vertebrate_core synonym: "cardiac conduction system" EXACT [] synonym: "cardiac impulse conducting system" EXACT [GO:0003161] synonym: "cardionector" EXACT [] synonym: "central conduction system" RELATED [] synonym: "heart conduction system" EXACT [GO:0003161] synonym: "impulse conducting system" EXACT [MA:0000094] xref: EFO:0003909 xref: EV:0100025 xref: FMA:9476 xref: MA:0000094 xref: MESH:A.07.541.409 xref: OG:0001271 xref: SCTID:281489000 xref: TAO:0005063 xref: ZFA:0005063 is_a: UBERON:0001133 ! cardiac muscle tissue is_a: UBERON:0004493 ! implied link automatically realized ! cardiac muscle tissue of myocardium relationship: part_of UBERON:0002349 {source="FMA"} ! myocardium [Term] id: UBERON:0002351 name: sinoatrial node alt_id: UBERON:FMA_9477-MA_0000097-ZFA_0005069 def: "The part of the cardiac conduction system that controls the timing of heart muscle contraction. It relays electrical signals to the AV node[GO]. Subdivision of conducting system of heart at the junction of the right atrium and the superior vena cava, around the sinoatrial nodal branch of right coronary artery and is continuous with the internodal tract[FMA]." [GO:0003163, Wikipedia:Sinoatrial_node] comment: WP:Heart states: "The SA node is found in all amniotes but not in more primitive vertebrates. In these animals, the muscles of the heart are relatively continuous and the sinus venosus coordinates the beat which passes in a wave through the remaining chambers. Indeed, since the sinus venosus is incorporated into the right atrium in amniotes, it is likely homologous with the SA node. In teleosts, with their vestigial sinus venosus, the main centre of coordination is, instead, in the atrium.". Note however that ZFA has SA node. subset: uberon_slim subset: vertebrate_core synonym: "cardiac pacemaker" EXACT [FMA:9477] synonym: "Koch's node" EXACT [FMA:9477] synonym: "node of Keith-Flack" EXACT [FMA:9477] synonym: "nodus sinuatrialis" EXACT [FMA:9477, FMA:TA] synonym: "SA nodal muscle tissue" EXACT [FMA:9477] synonym: "SA node" EXACT [FMA:9477] synonym: "sinoatrial node" EXACT [FMA:9477] synonym: "sinu-atrial node" EXACT [FMA:9477] synonym: "sinuatrial nodal muscle tissue" EXACT [FMA:9477] synonym: "sinuatrial node" EXACT [FMA:9477] synonym: "sinus node" EXACT [FMA:9477] synonym: "sinus node of Keith and Flack" EXACT [FMA:9477] xref: BTO:0004358 xref: EHDAA2:0004184 xref: FMA:9477 xref: GAID:561 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d2/Sinoatrial_node_low_mag.jpg/200px-Sinoatrial_node_low_mag.jpg xref: MA:0000097 xref: MESH:A.07.541.409.819 xref: ncithesaurus:Sinoatrial_Node xref: OpenCyc:Mx4rOhejDGMcEd2AAABQjYGu0g xref: SCTID:277687007 xref: TAO:0005069 xref: ZFA:0005069 is_a: UBERON:0001133 ! cardiac muscle tissue is_a: UBERON:0004493 ! implied link automatically realized ! cardiac muscle tissue of myocardium relationship: part_of UBERON:0002350 {source="ZFA"} ! conducting system of heart [Term] id: UBERON:0002352 name: atrioventricular node alt_id: UBERON:FMA_9478-MA_0000095-ZFA_0005070 def: "Subdivision of conducting system of heart which is located in the muscular part of the interatrial septum that is continuous with the atrioventricular bundle.[FMA]" [FMA:FMA, Wikipedia:Atrioventricular_node] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "aschoff-tawara node" EXACT [] synonym: "atrioventricular nodal muscle tissue" EXACT [] synonym: "av nodal muscle tissue" EXACT [] synonym: "av node" EXACT [] synonym: "node of tawara" EXACT [] xref: EFO:0000276 xref: EHDAA2:0004183 xref: FMA:9478 xref: GAID:558 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/92/Gray501.png/200px-Gray501.png xref: MA:0000095 xref: MAT:0000498 xref: MESH:A.07.541.409.147 xref: ncithesaurus:Atrioventricular_Node xref: OG:0001474 xref: OpenCyc:Mx4rMfD91mMcEd2AAABQjYGu0g xref: SCTID:277688002 xref: TAO:0005070 xref: ZFA:0005070 is_a: UBERON:0001133 ! cardiac muscle tissue is_a: UBERON:0004490 ! implied link automatically realized ! cardiac muscle tissue of atrium is_a: UBERON:0004493 ! implied link automatically realized ! cardiac muscle tissue of myocardium relationship: part_of UBERON:0002081 ! cardiac atrium relationship: part_of UBERON:0002082 ! cardiac ventricle relationship: part_of UBERON:0002350 ! conducting system of heart [Term] id: UBERON:0002353 name: atrioventricular bundle alt_id: UBERON:FMA_9484-MA_0002576 def: "Subdivision of conducting system of heart which consists of the atrial part and the ventricular part of the atrioventricular bundle and is the direct continuation of the atrioventricular node.[FMA]" [FMA:FMA, Wikipedia:Bundle_of_His] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "atrioventricular bundle muscle tissue" EXACT [FMA:9484] synonym: "atrioventricular fasciculus" EXACT [FMA:9484] synonym: "bundle of His" EXACT [FMA:9484] synonym: "His bundle" EXACT [] xref: FMA:9484 xref: GAID:559 xref: galen:BundleOfHis xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b6/ECG_Principle_fast.gif/200px-ECG_Principle_fast.gif xref: MA:0002576 xref: MESH:A.07.541.409.273 xref: ncithesaurus:Atrioventricular_Bundle xref: OpenCyc:Mx4rUv1WcGPJEd2AAABQjYGu0g xref: SCTID:362022007 is_a: UBERON:0001133 ! cardiac muscle tissue is_a: UBERON:0004493 ! implied link automatically realized ! cardiac muscle tissue of myocardium relationship: part_of UBERON:0002350 ! conducting system of heart relationship: part_of UBERON:0004146 {source="GO"} ! His-Purkinje system [Term] id: UBERON:0002354 name: purkinje fiber alt_id: UBERON:FMA_9492-MA_0000096 def: "Conducting tissue of heart which consists of Purkinje myocytes.[FMA]" [FMA:FMA, Wikipedia:Purkinje_fiber] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "myofibra conducens cardiacus" EXACT [] xref: FMA:9492 xref: GAID:560 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/96/Gray498.png/200px-Gray498.png xref: MA:0000096 xref: MESH:A.07.541.409.683 xref: ncithesaurus:Purkinje_Fiber is_a: UBERON:0001133 ! cardiac muscle tissue is_a: UBERON:0004493 ! implied link automatically realized ! cardiac muscle tissue of myocardium relationship: part_of UBERON:0002350 ! conducting system of heart [Term] id: UBERON:0002355 name: pelvis alt_id: UBERON:FMA_9578-MA_0000030 def: "Subdivision of abdomen, which is demarcated from the abdomen proper by the plane of the superior pelvic aperture, and from the perineum by the inferior surface of the pelvic diaphragm; together with the abdomen proper, it constitutes the abdomen[FMA]." [FMA:9578, Wikipedia:Pelvis] comment: Note that MA and FMA differ in what they consider to be parts of the pelvis. MA includes ureter, urethra, urinary bladder, reproductive organs subset: uberon_slim synonym: "lesser pelvis" EXACT [FMA:9578] synonym: "true pelvis" EXACT [FMA:9578] xref: BTO:0001006 xref: EFO:0002805 xref: EV:0100012 xref: FMA:9578 xref: GAID:87 xref: galen:Pelvis xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Gray242.png/200px-Gray242.png xref: MA:0000030 xref: MESH:A.01.673 xref: ncithesaurus:Pelvis xref: OpenCyc:Mx4rvVjiTJwpEbGdrcN5Y29ycA xref: SCTID:229765004 is_a: UBERON:0000475 ! organism subdivision disjoint_from: UBERON:0001224 ! renal pelvis relationship: part_of UBERON:0002417 ! abdominal segment of trunk [Term] id: UBERON:0002356 name: perineum alt_id: UBERON:FMA_9579-MA_0002466 def: "Subdivision of trunk, which is demarcated from the pelvis by the inferior surface of the pelvic diaphragm and from the lower limbs by the perineofemoral lines; together with the thorax, abdomen, and pelvis, it constitutes the trunk[FMA]." [FMA:9579, Wikipedia:Perineum] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "perineal region" EXACT [] synonym: "regio perinealis" EXACT [FMA:9579, FMA:TA] xref: EHDAA2:0004015 xref: EV:0100013 xref: FMA:9579 xref: GAID:90 xref: galen:Perineum xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ef/Gray406.png/200px-Gray406.png xref: MA:0002466 xref: MESH:A.01.719 xref: ncithesaurus:Perineum xref: OpenCyc:Mx4rvcHSh5wpEbGdrcN5Y29ycA xref: SCTID:243990009 is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0002100 ! trunk relationship: part_of UBERON:0002417 ! abdominal segment of trunk [Term] id: UBERON:0002357 name: serous pericardium alt_id: UBERON:FMA_9582-MA_0002739 def: "Serous membrane which has as its parts the epicardium and parietal serous pericardium that surrounds pericardial cavity." [Wikipedia:Serous_pericardium] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "serous portion of pericardium" EXACT [] xref: FMA:9582 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray968.png/200px-Gray968.png xref: MA:0002739 xref: SCTID:243954002 is_a: UBERON:0000042 ! serous membrane is_a: UBERON:0005983 ! implied link automatically realized ! heart layer relationship: part_of UBERON:0002406 ! pericardial sac [Term] id: UBERON:0002358 name: peritoneum alt_id: UBERON:FMA_9584-XAO_0000139-ZFA_0005120 def: "A serous membrane that forms the lining of the abdominal cavity or the coelom — it covers most of the intra-abdominal (or coelomic) organs — in higher vertebrates and some invertebrates (annelids, for instance). It is composed of a layer of mesothelium supported by a thin layer of connective tissue. The peritoneum both supports the abdominal organs and serves as a conduit for their blood and lymph vessels and nerves[WP]. The smooth transparent serous membrane that lines the cavity of the abdomen of a mammal and is folded inward over the abdominal and pelvic viscera[BTO]. The endothelial lining of the ABDOMINAL CAVITY. The parietal peritoneum covers the inside of the ABDOMINAL WALL and the visceral peritoneum covers the bowel, the MESENTERY, and certain of the organs. The portion that covers the bowel becomes the serosal layer of the bowel wall[GAID]." [Wikipedia:Peritoneum, ZFIN:curator] comment: TODO - in ZFA is_a epithelium subset: uberon_slim subset: vertebrate_core xref: AAO:0010814 xref: BTO:0001472 xref: EV:0100087 xref: FMA:9584 xref: GAID:18 xref: galen:Peritoneum xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5f/Gray1040.png/200px-Gray1040.png xref: MESH:A.01.047.025.600 xref: ncithesaurus:Peritoneum xref: OG:0001257 xref: OpenCyc:Mx4rvjJ72ZwpEbGdrcN5Y29ycA xref: TAO:0005120 xref: XAO:0000139 xref: ZFA:0005120 is_a: UBERON:0000042 ! serous membrane relationship: develops_from UBERON:0000926 ! mesoderm relationship: part_of UBERON:0003684 ! abdominal cavity [Term] id: UBERON:0002359 name: fibrous pericardium alt_id: UBERON:FMA_9586-MA_0002738 def: "Membrane organ which is attached to the pericardial sac proper and the central tendon of diaphragm and is continuous with the pretracheal fascia.[FMA]" [FMA:FMA, Wikipedia:Fibrous_pericardium] comment: This class was created automatically from a combination of ontologies subset: organ_slim subset: uberon_slim synonym: "fibrous portion of pericardium" EXACT [] xref: EMAPA:19029 xref: FMA:9586 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray968.png/200px-Gray968.png xref: MA:0002738 xref: SCTID:243953008 is_a: UBERON:0000094 ! membrane organ is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0002407 ! pericardium [Term] id: UBERON:0002360 name: meninx alt_id: UBERON:FMA_9589-MA_0001113 def: "Membrane organ that surrounds the brain and the spinal cord // Wikipedia: system of membranes which envelops the central nervous system. Whereas cyclostomes and fishes only have a single envelope called the primitive meninx, amphibians have two layers, consisting of an outer dura mater which is extremely dense and protective, and a pia-arachnoid or secondary meninx which is more delicate and vascular. Mammals have three meninges: pia mater (which follows all the convolutions of the brain and is the most interior), the arachnoid layer (which is delicate and sends strands to the pia mater), and the dura mater (the outer, more protective meninx). The area between the dura mater and the arachnoid layer is called the subdural space; the area between the arachnoid layer is called the subarachnoid space. An additional layer of tissue lies between the two hemispheres of the cerebrum and is called the falx cerebri. " [http://www.shsu.edu/~bio_mlt/Chap15.html, Wikipedia:Meninx] subset: organ_slim subset: uberon_slim subset: vertebrate_core synonym: "meninges" EXACT PLURAL [] xref: BTO:0000144 xref: EFO:0000584 xref: EFO:0000867 xref: EV:0100312 xref: FMA:9589 xref: GAID:687 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/48/Illu_meninges.jpg/200px-Illu_meninges.jpg xref: MA:0001113 xref: MAT:0000113 xref: MESH:A.08.186.566 xref: ncithesaurus:Meninges xref: NIF_GrossAnatomy:nlx_anat_090204 xref: OG:0001295 xref: OpenCyc:Mx4rwDOl8JwpEbGdrcN5Y29ycA xref: SCTID:362879001 xref: ZFA:0001355 is_a: UBERON:0000094 ! membrane organ is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: develops_from UBERON:0000926 ! mesoderm relationship: develops_from UBERON:0002342 ! neural crest relationship: part_of UBERON:0001017 ! central nervous system [Term] id: UBERON:0002361 name: pia mater alt_id: UBERON:FMA_9590-MA_0001116 def: "delicate innermost layer of the meninges—the membranes surrounding the brain and spinal cord. The thin, mesh-like pia mater closely envelops the entire surface of the brain, running down into the fissures of the cortex. It joins with the ependyma which lines the ventricles to form choroid plexuses that produce cerebrospinal fluid. In the spinal cord, the pia mater attaches to the dura mater by the denticular ligaments through the arachnoid membrane. The pia mater is a neural crest derivative." [Wikipedia:Pia_mater] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "pia mater of neuraxis" EXACT [] synonym: "pial membrane" EXACT [NIF_GrossAnatomy:nlx_anat_090209] xref: BTO:0001635 xref: EHDAA:1367 xref: EHDAA:1961 xref: EHDAA:2001 xref: EHDAA:2099 xref: EHDAA:2685 xref: EHDAA:2833 xref: EHDAA:2867 xref: EHDAA:3692 xref: EHDAA:3710 xref: EHDAA:6566 xref: EHDAA:6583 xref: EHDAA2:0001464 xref: EV:0100315 xref: FMA:9590 xref: GAID:693 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/65/Gray770.png/200px-Gray770.png xref: MA:0001116 xref: MESH:A.08.186.566.731 xref: ncithesaurus:Pia_Mater xref: NIF_GrossAnatomy:nlx_anat_090209 xref: OpenCyc:Mx4rvtesBZwpEbGdrcN5Y29ycA xref: SCTID:362305004 is_a: UBERON:0000391 ! leptomeninx [Term] id: UBERON:0002362 name: arachnoid mater alt_id: UBERON:FMA_9591-MA_0001114 def: "One of the three meninges, the membranes that cover the brain and spinal cord. It is interposed between the two other meninges, the more superficial dura mater and the deeper pia mater, and is separated from the pia mater by the subarachnoid space." [Wikipedia:Arachnoid_mater] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "arachnoid" EXACT [] synonym: "arachnoid mater of neuraxis" EXACT [] synonym: "arachnoid membrane" EXACT [NIF_GrossAnatomy:nlx_anat_090208] synonym: "arachnoidea mater" RELATED [BTO:0001636] xref: BTO:0001636 xref: EV:0100314 xref: FMA:9591 xref: GAID:688 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a0/Gray767.png/200px-Gray767.png xref: MA:0001114 xref: MESH:A.08.186.566.166 xref: ncithesaurus:Arachnoiditis xref: NIF_GrossAnatomy:nlx_anat_090208 xref: OpenCyc:Mx4rve5HlJwpEbGdrcN5Y29ycA xref: SCTID:362304000 is_a: UBERON:0000391 ! leptomeninx [Term] id: UBERON:0002363 name: dura mater alt_id: UBERON:FMA_9592-MA_0001115 def: "the outermost of the three layers of the meninges surrounding the brain and spinal cord. The other two meningeal layers are the pia mater and the arachnoid mater. The dura surrounds the brain and the spinal cord and is responsible for keeping in the cerebrospinal fluid." [Wikipedia:Dura_mater] subset: organ_slim subset: uberon_slim synonym: "dura" RELATED [BTO:0001637] synonym: "dura mater of neuraxis" EXACT [] synonym: "pachymeninges" EXACT [NIF_GrossAnatomy:nlx_anat_090206] xref: BTO:0001637 xref: EMAPA:17776 xref: EV:0100313 xref: FMA:9592 xref: GAID:691 xref: MA:0001115 xref: MESH:A.08.186.566.395 xref: ncithesaurus:Dura_Mater xref: NIF_GrossAnatomy:nlx_anat_090206 xref: OpenCyc:Mx4rvvmzqZwpEbGdrcN5Y29ycA xref: SCTID:362301008 is_a: UBERON:0002360 ! meninx relationship: develops_from UBERON:0007647 ! ectomeninx relationship: part_of UBERON:0002360 ! meninx [Term] id: UBERON:0002364 name: tympanic membrane alt_id: UBERON:FMA_9595-MA_0000257 def: "The tympanic membrane (also tympanum, myrinx or eardrum), is a thin membrane that separates the external ear from the middle ear. Its function is to transmit sound from the air to the ossicles inside the middle ear. The malleus bone bridges the gap between the eardrum and the other ossicles. Rupture or perforation of the eardrum can lead to conductive hearing loss. [WP,unvetted]." [Wikipedia:Tympanic_membrane] comment: most AOs consider this part of the middle ear, so we go with this and place it in the middle ear as a border to the external subset: organ_slim subset: uberon_slim synonym: "ear drum" EXACT [] synonym: "eardrum" EXACT [] synonym: "lateral wall of tympanic cavity" EXACT [] synonym: "membranous wall of tympanic cavity" EXACT [] synonym: "paries membranaceus cavi tympani" EXACT [FMA:9595, FMA:TA] synonym: "Rivinus' membrane" EXACT [] synonym: "tympanum" RELATED [Wikipedia:Tympanic_membrane] xref: EV:0100358 xref: FMA:9595 xref: GAID:870 xref: MA:0000257 xref: MESH:A.09.246.397.873 xref: ncithesaurus:Tympanic_Membrane xref: OG:0001146 xref: SCTID:181180005 xref: XAO:0000212 is_a: UBERON:0000094 ! membrane organ relationship: adjacent_to UBERON:0001691 {source="cjm"} ! external ear relationship: adjacent_to UBERON:0004114 {source="cjm"} ! tympanic cavity relationship: develops_from UBERON:0009213 {source="Wikipedia"} ! branchial membrane of 1st arch relationship: part_of UBERON:0001756 {source="MA"} ! middle ear [Term] id: UBERON:0002365 name: exocrine gland alt_id: UBERON:FMA_9596-MA_0002564 def: "A gland that secretes products (excluding hormones and other chemical messengers) into ducts (duct glands) which lead directly into the external environment[WP]. Typical exocrine glands include sweat glands, salivary glands, mammary glands, stomach, liver, pancreas" [Wikipedia:Exocrine_gland] comment: This class was created automatically from a combination of ontologies subset: organ_slim subset: uberon_slim synonym: "ducted gland" EXACT [] synonym: "exocrine gland" EXACT [] synonym: "glandula exocrina" EXACT [] xref: AEO:0000097 xref: BTO:0000765 xref: EHDAA2:0003097 xref: FMA:9596 xref: GAID:34 xref: MA:0002564 xref: MESH:A.10.336 xref: ncithesaurus:Exocrine_Gland is_a: UBERON:0002530 ! implied link automatically realized ! gland relationship: part_of UBERON:0002330 intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0002330 ! exocrine system [Term] id: UBERON:0002366 name: bulbo-urethral gland alt_id: UBERON:FMA_9599-MA_0000401 def: "Lobular organ the parenchyma of which consists of glandular acini which communicate the bulbar part of the urethra. Examples: There only two instances, right and left bulbo-urethral glands.[FMA]" [FMA:FMA, Wikipedia:Bulbo-urethral_gland] comment: This class was created automatically from a combination of ontologies subset: organ_slim subset: uberon_slim synonym: "bulbourethral gland" EXACT [] synonym: "Cowper's gland" EXACT [] synonym: "Cowper's glands" EXACT [] xref: BTO:0001698 xref: EMAPA:19286 xref: FMA:9599 xref: GAID:387 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/35/Male_anatomy.png/200px-Male_anatomy.png xref: MA:0000401 xref: MESH:A.05.360.444.123 xref: SCTID:278918009 is_a: UBERON:0001338 ! implied link automatically realized ! urethral gland is_a: UBERON:0002530 ! gland is_a: UBERON:0003937 ! implied link automatically realized ! sex gland relationship: part_of UBERON:0000990 ! reproductive system relationship: part_of UBERON:0001333 ! male urethra relationship: part_of UBERON:0002330 ! exocrine system [Term] id: UBERON:0002367 name: prostate gland alt_id: UBERON:FMA_9600-MA_0000404-MIAA_0000078 def: "The prostate gland is a partly muscular, partly glandular body that is situated near the base of the mammalian male urethra and secretes an alkaline viscid fluid which is a major constituent of the ejaculatory fluid." [GO:0030850, Wikipedia:Prostate] comment: TODO - FMA treats the gland as part of the prostate - see also FMA:74119. subset: major_organ subset: organ_slim subset: uberon_slim synonym: "prostate" EXACT [] xref: BTO:0001129 xref: EFO:0000858 xref: EMAPA:19287 xref: EV:0100104 xref: FMA:9600 xref: GAID:392 xref: galen:ProstateGland xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a1/Prostatelead.jpg/200px-Prostatelead.jpg xref: MA:0000404 xref: MAT:0000078 xref: MESH:A.05.360.444.575 xref: MIAA:0000078 xref: ncithesaurus:Prostate_Gland xref: OG:0001261 xref: OpenCyc:Mx4rv6trqZwpEbGdrcN5Y29ycA xref: SCTID:181422007 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002530 ! gland is_a: UBERON:0005399 ! implied link automatically realized ! male reproductive gland relationship: develops_from UBERON:0003820 ! prostate bud relationship: part_of UBERON:0000079 ! male reproductive system [Term] id: UBERON:0002368 name: endocrine gland alt_id: UBERON:FMA_9602-MA_0002563 def: "Endocrine glands are glands of the endocrine system that secrete their products, hormones, directly into the blood rather than through a duct. The main endocrine glands include the pituitary gland, pancreas, ovaries, testes, thyroid gland, and adrenal glands. The hypothalamus is a neuroendocrine organ. Other organs which are not so well known for their endocrine activity include the stomach, which produces such hormones as ghrelin[WP]." [Wikipedia:Endocrine_gland] comment: This class was created automatically from a combination of ontologies subset: organ_slim subset: uberon_slim synonym: "ductless gland" EXACT [] synonym: "glandula endocrina" EXACT [] xref: AEO:0000098 xref: BTO:0001488 xref: EHDAA2:0003098 xref: FMA:9602 xref: GAID:335 xref: MA:0002563 xref: MESH:A.06.407 xref: ncithesaurus:Endocrine_Gland xref: OpenCyc:Mx4rvbkiRZwpEbGdrcN5Y29ycA xref: SCTID:40818001 is_a: UBERON:0002530 ! implied link automatically realized ! gland relationship: part_of UBERON:0000949 intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0000949 ! endocrine system [Term] id: UBERON:0002369 name: adrenal gland alt_id: UBERON:FMA_9604-MA_0000116-MIAA_0000071-XAO_0000164 def: "Either of a pair of complex endocrine organs near the anterior medial border of the kidney consisting of a mesodermal cortex that produces glucocorticoid, mineralocorticoid, and androgenic hormones and an ectodermal medulla that produces epinephrine and norepinephrine[BTO]." [BTO:0000047, Wikipedia:Adrenal_gland] comment: The origin of the adrenal gland is still controversial. It is thought to share the same origin as the kidney and gonads, derived from coelomic epithelium of the urogenital ridge and/or the underlying mesenchyme (Keegan and Hammer, 2002; Morohashi, 1997) subset: organ_slim subset: uberon_slim synonym: "adrenal" RELATED [BTO:0000047] synonym: "adrenal capsule" RELATED [BTO:0000047] synonym: "adrenal medulla cell" RELATED [] synonym: "atrabiliary capsule" RELATED [BTO:0000047] synonym: "epinephros" RELATED [BTO:0000047] synonym: "glandula suprarenalis" RELATED [BTO:0000047] synonym: "interrenal gland" RELATED HOMOLOGY [GO:0030325] synonym: "suprarenal capsule" RELATED [BTO:0000047] synonym: "suprarenal gland" RELATED [] xref: AAO:0010551 xref: BTO:0000047 xref: EFO:0000238 xref: EMAPA:18426 xref: EV:0100135 xref: FMA:9604 xref: GAID:446 xref: galen:AdrenalGland xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c6/Illu_endocrine_system.jpg/200px-Illu_endocrine_system.jpg xref: MA:0000116 xref: MAT:0000071 xref: MESH:A.06.407.071 xref: MIAA:0000071 xref: ncithesaurus:Adrenal_Gland xref: OpenCyc:Mx4rvXYiz5wpEbGdrcN5Y29ycA xref: SCTID:181127006 xref: XAO:0000164 is_a: UBERON:0002368 ! implied link automatically realized ! endocrine gland is_a: UBERON:0002530 ! gland is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0005172 ! implied link automatically realized ! abdomen organ relationship: develops_from UBERON:0000926 {source="Wikipedia"} ! mesoderm relationship: develops_from UBERON:0002342 {source="Wikipedia"} ! neural crest relationship: part_of UBERON:0000916 ! abdomen relationship: part_of UBERON:0000949 ! endocrine system [Term] id: UBERON:0002370 name: thymus alt_id: UBERON:FMA_9607-MA_0000142-MIAA_0000080-XAO_0000163-ZFA_0001078 def: "Anatomical structure of largely lymphoid tissue that functions in cell-mediated immunity by being the site where T cells develop." [NLM:thymus, Wikipedia:Thymus] comment: check - a subtype of gland? not in GO. NCIT has thymus and thymus gland subset: major_organ subset: organ_slim subset: uberon_slim subset: vertebrate_core synonym: "thymus gland" EXACT [] xref: AAO:0010548 xref: BTO:0001374 xref: EFO:0000860 xref: EHDAA:9119 xref: EHDAA2:0002017 xref: EMAPA:18768 xref: EV:0100138 xref: FMA:9607 xref: GAID:464 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cf/Illu_thymus.jpg/200px-Illu_thymus.jpg xref: MA:0000142 xref: MAT:0000080 xref: MESH:A.06.407.850 xref: MIAA:0000080 xref: ncithesaurus:Thymus_Gland xref: OG:0000253 xref: OpenCyc:Mx4rvpIympwpEbGdrcN5Y29ycA xref: SCTID:118507000 xref: TAO:0001078 xref: XAO:0000163 xref: ZFA:0001078 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0002368 {source="EHDAA2"} ! endocrine gland is_a: UBERON:0004177 ! implied link automatically realized ! hemopoietic organ is_a: UBERON:0005057 ! implied link automatically realized ! immune organ is_a: UBERON:0005058 ! implied link automatically realized ! hemolymphoid system gland relationship: develops_from UBERON:0005562 {source="ZFA"} ! thymus primordium relationship: part_of UBERON:0000949 {source="XAO"} ! endocrine system relationship: part_of UBERON:0002390 {source="FMA"} ! hematopoietic system relationship: part_of UBERON:0002405 {source="XAO"} ! immune system relationship: part_of UBERON:0009113 ! thymic region [Term] id: UBERON:0002371 name: bone marrow alt_id: UBERON:FMA_9608-MA_0000134-MIAA_0000084-XAO_0000123-ZFA_0000669 def: "flexible tissue found in the hollow interior of bones. In adults, marrow in large bones produces new blood cells[WP]." [Wikipedia:Bone_marrow] comment: TODO - create superclass for bone marrow / head kidney. both are portions of tissue in the hematopoetic system. also consider adding as subclass of zone of bone organ for consistency with FMA subset: uberon_slim synonym: "anterior kidney" RELATED [] synonym: "head kidney" BROAD [] synonym: "kidney marrow" RELATED [] synonym: "medulla of bone" RELATED [BTO:0000141] synonym: "medulla ossea" EXACT [] synonym: "medulla ossium" RELATED [BTO:0000141] xref: AAO:0011007 xref: BTO:0000141 xref: BTO:0000829 xref: EFO:0000868 xref: EV:0100046 xref: FMA:9608 xref: GAID:1287 xref: galen:BoneMarrow xref: MA:0000134 xref: MAT:0000084 xref: MESH:A.15.382.216 xref: MIAA:0000084 xref: ncithesaurus:Bone_Marrow xref: OG:0001218 xref: OpenCyc:Mx4rvVm-FpwpEbGdrcN5Y29ycA xref: SCTID:421320006 xref: XAO:0000123 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001474 ! bone relationship: part_of UBERON:0002390 ! hematopoietic system relationship: part_of UBERON:0002405 ! immune system [Term] id: UBERON:0002372 name: tonsil alt_id: UBERON:FMA_9609-MA_0000143 def: "Portion of lymphoid tissue on either side of the throat." [Wikipedia:Tonsil] comment: Most commonly, the term "tonsils" refers to the palatine tonsils that can be seen in the back of the throat. subset: uberon_slim synonym: "Mandel" RELATED [BTO:0001387] xref: BTO:0001387 xref: EFO:0001401 xref: EV:0100052 xref: FMA:9609 xref: GAID:341 xref: MA:0000143 xref: MESH:A.03.867.603.925 xref: ncithesaurus:Tonsil xref: OG:0001139 xref: OpenCyc:Mx4rvVivrZwpEbGdrcN5Y29ycA is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0001744 ! lymphoid tissue relationship: part_of UBERON:0000166 ! oral opening relationship: part_of UBERON:0001735 ! tonsillar ring [Term] id: UBERON:0002373 name: palatine tonsil alt_id: UBERON:FMA_9610-MA_0000775-MIAA_0000291 def: "tonsils on the left and right sides at the back of the throat. one of the mucosa-associated lymphoid tissues (MALT), located at the entrance to the upper respiratory and gastrointestinal tracts to protect the body from the entry of exogenous material through mucosal sites[WP]." [Wikipedia:Palatine_tonsil] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "faucial tonsil" EXACT [] xref: BTO:0004714 xref: EFO:0001977 xref: EV:0100393 xref: FMA:9610 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f6/Illu_mouth.jpg/200px-Illu_mouth.jpg xref: MA:0000775 xref: MAT:0000291 xref: MIAA:0000291 xref: ncithesaurus:Palatine_Tonsil xref: OG:0001140 xref: SCTID:265787001 is_a: UBERON:0002372 ! tonsil relationship: develops_from UBERON:0002539 {source="Wikipedia"} ! pharyngeal arch [Term] id: UBERON:0002374 name: metacarpal bone alt_id: UBERON:FMA_9612-MA_0000302 def: "The metacarpus is the intermediate part of the hand skeleton that is located between the phalanges (bones of the fingers) distally and the carpus which forms the connection to the forearm. The metacarpus consists of metacarpal bones. The metacarpals form a transverse arch to which the rigid row of distal carpal bones are fixed. The peripheral metacarpals (those of the thumb and little finger) form the sides of the cup of the palmar gutter and as they are brought together they deepen this concavity. The index metacarpal is the most firmly fixed, while the thumb metacarpal articulates with the trapezium and acts independently from the others. The middle metacarpals are tightly united to the carpus by intrinsic interlocking bone elements at their bases. The ring metacarpal forms a transitional element of the semi-independent last metacarpal. [WP,unvetted]." [Wikipedia:Metacarpal_bone] subset: uberon_slim synonym: "metacarpal" EXACT [] xref: EFO:0003886 xref: FMA:9612 xref: galen:Metacarpal xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2f/Metacarpals_numbered-en.svg/200px-Metacarpals_numbered-en.svg.png xref: MA:0000302 xref: ncithesaurus:Metacarpal_Bone xref: OpenCyc:Mx4rv1Bk45wpEbGdrcN5Y29ycA xref: SCTID:181977005 is_a: UBERON:0002495 {source="FMA"} ! long bone is_a: UBERON:0003607 ! implied link automatically realized ! forelimb long bone is_a: UBERON:0003821 ! implied link automatically realized ! metacarpal/metatarsal bone is_a: UBERON:0005897 ! implied link automatically realized ! hand bone relationship: part_of UBERON:0004453 intersection_of: UBERON:0003821 ! metacarpal/metatarsal bone intersection_of: part_of UBERON:0004453 ! metacarpus [Term] id: UBERON:0002375 name: cricoid cartilage alt_id: UBERON:FMA_9615-MA_0001762 def: "The cricoid cartilage, or simply cricoid (from the Greek krikoeides meaning 'ring-shaped'), is the only complete ring of cartilage around the trachea. [WP,unvetted]." [Wikipedia:Cricoid_cartilage] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: AAO:0000675 xref: EHDAA:9393 xref: EHDAA2:0000326 xref: EMAPA:18696 xref: FMA:9615 xref: GAID:110 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/54/Gray1194.png/200px-Gray1194.png xref: MA:0001762 xref: MESH:A.02.165.507.211 xref: ncithesaurus:Cricoid_Cartilage xref: OG:0001308 xref: SCTID:263484006 is_a: UBERON:0001739 {source="MA"} ! laryngeal cartilage is_a: UBERON:0001994 {source="Wikipedia"} ! hyaline cartilage relationship: develops_from UBERON:0003115 {source="Wikipedia"} ! pharyngeal arch 4 relationship: develops_from UBERON:0003117 {source="Wikipedia"} ! pharyngeal arch 6 [Term] id: UBERON:0002376 name: muscle of head alt_id: UBERON:FMA_9616-MA_0000578-ZFA_0000328 def: "Muscle organ which is a part of the head. Examples: masseter, orbicularis oculi.[FMA]" [FMA:9616] comment: TODO - check ZFA subset: uberon_slim subset: vertebrate_core synonym: "adult head muscle organ" EXACT [OBOL:automatic] synonym: "cephalic muscle" EXACT [ZFA:0001652] synonym: "cephalic musculature" EXACT [] synonym: "cranial muscle " RELATED [ZFA:0001652] synonym: "head muscle" EXACT [] synonym: "head muscle organ" EXACT [OBOL:automatic] synonym: "head muscles" RELATED [] synonym: "muscle organ of adult head" EXACT [OBOL:automatic] synonym: "muscle organ of head" EXACT [OBOL:automatic] synonym: "musculus caput" EXACT [] xref: AAO:0000107 xref: BTO:0000021 xref: EFO:0003524 xref: EMAPA:18171 xref: FMA:9616 xref: MA:0000578 xref: TAO:0000328 xref: WBbt:0006761 xref: ZFA:0000328 xref: ZFA:0001652 is_a: UBERON:0001630 ! muscle organ relationship: part_of UBERON:0000033 intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0000033 ! head [Term] id: UBERON:0002377 name: muscle of neck alt_id: UBERON:FMA_9617-MA_0000587 def: "Muscle organ which is a part of the neck. Examples: platysma, sternocleidomastoid, cricothyroid muscle.[FMA]" [FMA:9617] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "muscle organ of neck" EXACT [OBOL:automatic] synonym: "muscle organ of neck (volume)" EXACT [OBOL:automatic] synonym: "neck (volume) muscle organ" EXACT [OBOL:automatic] synonym: "neck muscle" EXACT [] synonym: "neck muscle organ" EXACT [OBOL:automatic] xref: FMA:9617 xref: GAID:149 xref: MA:0000587 xref: MESH:A.02.633.567.650 xref: ncithesaurus:Neck_Muscle is_a: UBERON:0001630 ! muscle organ relationship: part_of UBERON:0000974 intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0000974 ! neck relationship: part_of UBERON:0000974 ! neck [Term] id: UBERON:0002378 name: muscle of abdomen alt_id: UBERON:FMA_9620-MA_0000520 def: "Muscle (organ) which is a part of the abdomen. Examples: external oblique, rectus abdominis." [Wikipedia:Abdominal_muscle] subset: uberon_slim synonym: "abdomen muscle" EXACT [] synonym: "abdomen muscle organ" EXACT [OBOL:automatic] synonym: "abdominal muscle" EXACT [] synonym: "abdominal wall muscle" EXACT [] synonym: "muscle organ of abdomen" EXACT [OBOL:automatic] xref: BTO:0001261 xref: FMA:9620 xref: GAID:89 xref: MA:0000520 xref: MESH:A.02.633.567.050 xref: ncithesaurus:Abdominal_Muscle xref: OpenCyc:Mx4rvlygNJwpEbGdrcN5Y29ycA xref: SCTID:361352008 is_a: UBERON:0003833 ! implied link automatically realized ! abdominal segment muscle is_a: UBERON:0005172 ! implied link automatically realized ! abdomen organ relationship: part_of UBERON:0000916 intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0000916 ! abdomen [Term] id: UBERON:0002379 name: perineal muscle alt_id: UBERON:FMA_9623-MA_0000538 def: "A muscle organ that is part of a perineum [Obol]." [OBOL:automatic] comment: This class was created automatically from a combination of ontologies synonym: "muscle of perineum" EXACT [] synonym: "muscle organ of perineal region" EXACT [OBOL:automatic] synonym: "muscle organ of perineum" EXACT [OBOL:automatic] synonym: "perineal region muscle organ" EXACT [OBOL:automatic] synonym: "perineum muscle organ" EXACT [OBOL:automatic] xref: EMAPA:18923 xref: FMA:9623 xref: MA:0000538 xref: ncithesaurus:Perineal_Muscle is_a: UBERON:0001325 ! muscle of pelvis relationship: part_of UBERON:0002356 intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0002356 ! perineum [Term] id: UBERON:0002380 name: trapezius alt_id: UBERON:FMA_9626-MA_0002398 def: "In human anatomy, the trapezius is a large superficial muscle that extends longitudinally from the occipital bone to the lower thoracic vertebrae and laterally to the spine of the scapula (shoulder blade). Its functions are to move the scapulae and support the arm. The trapezius has three functional regions: the superior region (descending part), which supports the weight of the arm; the intermediate region (transverse part), which retracts the scapulae; and the inferior region (ascending part), which medially rotates and depresses the scapulae. [WP,unvetted]." [Wikipedia:Trapezius] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "trapezius muscle" EXACT [] xref: EMAPA:18183 xref: FMA:9626 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/60/Trapezius.png/200px-Trapezius.png xref: MA:0002398 xref: ncithesaurus:Trapezius_Muscle xref: OG:0000834 xref: SCTID:181740005 is_a: UBERON:0001482 ! muscle of shoulder [Term] id: UBERON:0002381 name: pectoralis major alt_id: UBERON:FMA_9627-MA_0002354 def: "The pectoralis major is a thick, fan-shaped muscle, situated at the upper front of the chest wall. It makes up the bulk of the chest muscles in the male and lies under the breast in the female. Underneath the pectoralis major is the pectoralis minor, a thin, triangular muscle. [WP,unvetted]." [Wikipedia:Pectoralis_major] subset: organ_slim subset: uberon_slim synonym: "pectoralis major muscle" EXACT [] synonym: "pectoralis major muscle structure" EXACT [SCTID:60005003] xref: EHDAA:8311 xref: EHDAA2:0001424 xref: EMAPA:18179 xref: FMA:9627 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6c/Pectoralis_major.png/200px-Pectoralis_major.png xref: MA:0002354 xref: ncithesaurus:Pectoralis_Major xref: OG:0000895 xref: SCTID:60005003 is_a: UBERON:0001495 ! pectoral muscle [Term] id: UBERON:0002382 name: rectus abdominis alt_id: UBERON:FMA_9628-MA_0002364 def: "The rectus abdominis muscle is a paired muscle running vertically on each side of the anterior wall of the human abdomen (and in some other animals). There are two parallel muscles, separated by a midline band of connective tissue called the linea alba (white line). It extends from the pubic symphysis/pubic crest inferiorly to the xiphisternum/xiphoid process and lower costal cartilages (5–7) superiorly. It is contained in the Rectus sheath. The rectus is usually crossed by three fibrous bands licked by the tendinous inscriptions. While the 'sixpack' is by far the most common configuration of the muscle bellies of the rectus, there exist rare anatomic variations which result in the appearance of eight ('eightpack'), ten, or—even rarer—asymmetrically arranged segments. All these variations are functionally equivalent. [WP,unvetted]." [Wikipedia:Rectus_abdominis] comment: This class was created automatically from a combination of ontologies subset: organ_slim subset: uberon_slim xref: EHDAA:8252 xref: EHDAA2:0001595 xref: EMAPA:18164 xref: FMA:9628 xref: GAID:142 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/95/Rectus_abdominis.png/200px-Rectus_abdominis.png xref: MA:0002364 xref: MESH:A.02.633.567.050.800 xref: ncithesaurus:Rectus_Abdominis xref: OG:0000863 is_a: UBERON:0002378 ! muscle of abdomen [Term] id: UBERON:0002383 name: supraspinatus alt_id: UBERON:FMA_9629-MA_0002389 def: "The supraspinatus is a relatively small muscle of the upper limb that takes its name from its origin from the supraspinous fossa superior to the spine of the scapula. It is one of the four rotator cuff muscles and also abducts the arm at the shoulder. The spine of the scapula separates the supraspinatus muscle from the infraspinatus muscle, which originates below the spine. [WP,unvetted]." [Wikipedia:Supraspinatus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: EHDAA:8319 xref: EHDAA2:0001967 xref: EMAPA:18182 xref: FMA:9629 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/99/Arm_muscles_back_numbers.png/200px-Arm_muscles_back_numbers.png xref: MA:0002389 xref: ncithesaurus:Supraspinatus xref: OG:0000848 xref: SCTID:181626001 is_a: UBERON:0001482 ! muscle of shoulder [Term] id: UBERON:0002384 name: connective tissue alt_id: UBERON:FMA_9640-FMA_9721-MA_0000011-MA_0000115-MIAA_0000301-XAO_0000173-XAO_0001017 def: "Tissue with cells that deposit non-polarized extracellular matrix including connective tissue fibres and ground substance." [VAO:0000017] subset: uberon_slim subset: vertebrate_core synonym: "Bindegewebe" RELATED [BTO:0000421] synonym: "fascia" RELATED [] synonym: "portion of connective tissue" EXACT [FMA:9640] synonym: "textus connectivus" EXACT [] xref: AAO:0000098 xref: BTO:0000421 xref: EFO:0000952 xref: EV:0100150 xref: FMA:9640 xref: GAID:100 xref: galen:ConnectiveTissue xref: MA:0000011 xref: MAT:0000301 xref: MESH:A.02.340 xref: MIAA:0000301 xref: ncithesaurus:Connective_Tissue xref: OpenCyc:Mx4rv-aBgZwpEbGdrcN5Y29ycA xref: SCTID:361919005 xref: VAO:0000017 xref: XAO:0001017 xref: ZFA:0001632 is_a: UBERON:0000479 ! tissue [Term] id: UBERON:0002385 name: muscle tissue alt_id: UBERON:FMA_9641-MA_0002437 def: "Muscle tissue is a contractile tissue made up of actin and myosin fibers[GO]." [GO:0060537, https://sourceforge.net/tracker/index.php?func=detail&aid=2801266&group_id=36855&atid=440764, Wikipedia:Muscle_tissue] comment: Vertebrate muscle is categorized into three major muscle types defined by their structural and functional properties: skeletal, cardiac and smooth. In Dmel the counterparts are somatic, heart/cardiac and visceral. Here we take a cell type based approach. subset: uberon_slim synonym: "muscle tissue" EXACT SENSU [] synonym: "portion of muscle tissue" EXACT [FMA:9641] synonym: "textus muscularis" EXACT [] xref: AAO:0000306 xref: AEO:0000122 xref: EHDAA2:0003122 xref: FMA:9641 xref: galen:MuscleTissue xref: MA:0002437 xref: MESH:A.02.633 xref: ncithesaurus:Muscle_Tissue xref: SCTID:91727004 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure disjoint_from: UBERON:0003714 ! neural tissue relationship: develops_from UBERON:0000926 ! mesoderm relationship: part_of UBERON:0000383 ! musculature of body relationship: part_of UBERON:0001015 ! musculature relationship: spatially_disjoint_from UBERON:0003714 ! neural tissue [Term] id: UBERON:0002386 name: forelimb zeugopod alt_id: UBERON:FMA_9663-MA_0000034 def: "distal region of the upper limb, between the elbow and the wrist." [Wikipedia:Forearm] subset: uberon_slim synonym: "antebrachial region" EXACT [] synonym: "antebrachium" EXACT [Wikipedia:Forearm] synonym: "arm middle limb segment" EXACT [OBOL:automatic] synonym: "arm zeugopod" EXACT [OBOL:automatic] synonym: "brachial region middle limb segment" EXACT [OBOL:automatic] synonym: "brachial region zeugopod" EXACT [OBOL:automatic] synonym: "forearm" EXACT [] synonym: "forelimb zeugopodium" EXACT [] synonym: "intermediate segment of free upper limb" EXACT [] synonym: "lower arm" EXACT [] synonym: "lower segment of arm" EXACT [] synonym: "middle limb segment of arm" EXACT [OBOL:automatic] synonym: "middle limb segment of brachial region" EXACT [OBOL:automatic] synonym: "middle limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb middle limb segment" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb zeugopod" EXACT [OBOL:automatic] synonym: "regio antebrachialis" EXACT [FMA:9663, FMA:TA] synonym: "zeugopod of arm" EXACT [] synonym: "zeugopod of brachial region" EXACT [OBOL:automatic] synonym: "zeugopod of forelimb" EXACT [] synonym: "zeugopod of proximal segment of free upper limb" EXACT [OBOL:automatic] xref: BTO:0001447 xref: EFO:0003053 xref: EHDAA:4172 xref: EHDAA:6218 xref: EHDAA2:0000553 xref: EMAPA:17417 xref: FMA:9663 xref: GAID:55 xref: galen:Forearm xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/50/Forearm_labeled.png/200px-Forearm_labeled.png xref: MA:0000034 xref: MESH:A.01.378.800.585 xref: ncithesaurus:Forearm xref: OG:0000341 xref: OpenCyc:Mx4rvVjnmpwpEbGdrcN5Y29ycA xref: SCTID:362741001 is_a: UBERON:0002471 ! implied link automatically realized ! zeugopod is_a: UBERON:0008785 ! implied link automatically realized ! upper limb segment relationship: part_of UBERON:0002102 intersection_of: UBERON:0002471 ! zeugopod intersection_of: part_of UBERON:0002102 ! forelimb relationship: part_of UBERON:0001460 ! arm [Term] id: UBERON:0002387 name: foot alt_id: UBERON:FMA_9664-MA_0000044 def: "The foot is an anatomical structure found in many vertebrates. It is the terminal portion of a limb which bears weight and allows locomotion. In many animals with feet, the foot is a separate organ at the terminal part of the leg made up of one or more segments or bones, generally including claws or nails. [WP,unvetted]." [Wikipedia:Foot] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "autopod of hind limb" EXACT [OBOL:automatic] synonym: "autopod of hindlimb" EXACT [OBOL:automatic] synonym: "autopod of inferior member" EXACT [OBOL:automatic] synonym: "autopod of lower extremity" EXACT [OBOL:automatic] synonym: "distal free limb segment of hind limb" EXACT [OBOL:automatic] synonym: "distal free limb segment of hindlimb" EXACT [OBOL:automatic] synonym: "distal free limb segment of inferior member" EXACT [OBOL:automatic] synonym: "distal free limb segment of lower extremity" EXACT [OBOL:automatic] synonym: "hind limb autopod" EXACT [OBOL:automatic] synonym: "hind limb distal free limb segment" EXACT [OBOL:automatic] synonym: "hind paw" NARROW SENSU [EMAPA:17428, OBOL:automatic] synonym: "hind-paw" NARROW SENSU [EMAPA:17428] synonym: "hindlimb autopod" EXACT [OBOL:automatic] synonym: "hindlimb autopodium" EXACT [OBOL:automatic] synonym: "hindlimb distal free limb segment" EXACT [OBOL:automatic] synonym: "inferior member autopod" EXACT [OBOL:automatic] synonym: "inferior member distal free limb segment" EXACT [OBOL:automatic] synonym: "lower extremity autopod" EXACT [OBOL:automatic] synonym: "lower extremity distal free limb segment" EXACT [OBOL:automatic] synonym: "pes" EXACT [UBERON:cjm] synonym: "terminal segment of free lower limb" EXACT [] xref: BTO:0000476 xref: EFO:0003065 xref: EHDAA2:0000546 xref: EMAPA:17459 xref: FMA:9664 xref: GAID:40 xref: galen:Foot xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ae/Male_Right_Foot_1.jpg/200px-Male_Right_Foot_1.jpg xref: MA:0000044 xref: MESH:A.01.378.610.250 xref: ncithesaurus:Foot xref: OG:0000350 xref: OpenCyc:Mx4rvVi-k5wpEbGdrcN5Y29ycA xref: SCTID:302545001 is_a: UBERON:0002470 ! autopod is_a: UBERON:0008784 ! implied link automatically realized ! lower limb segment relationship: part_of UBERON:0002103 intersection_of: UBERON:0002470 ! autopod intersection_of: part_of UBERON:0002103 ! hindlimb relationship: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0002388 name: ankle alt_id: UBERON:FMA_9665-MA_0000043 def: "In human anatomy, the ankle joint is formed where the foot and the leg meet. The ankle, or talocrural joint, is a synovial hinge joint that connects the distal ends of the tibia and fibula in the lower limb with the proximal end of the talus bone in the foot. The articulation between the tibia and the talus bears more weight than between the smaller fibula and the talus. The term 'ankle' is used to describe structures in the region of the ankle joint proper. [WP,unvetted]." [Wikipedia:Ankle] comment: We follow MA in making this part of the hindlimb for now, but subset: uberon_slim xref: EFO:0001409 xref: FMA:9665 xref: GAID:41 xref: galen:Ankle xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bf/Ankle_en.svg/200px-Ankle_en.svg.png xref: MA:0000043 xref: MESH:A.01.378.610.250.149 xref: OpenCyc:Mx4rvVi-R5wpEbGdrcN5Y29ycA is_a: UBERON:0008784 {source="FMA"} ! lower limb segment relationship: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0002389 name: hand digit alt_id: UBERON:0000028 alt_id: UBERON:FMA_9666-MA_0000041 def: "Subdivision of the hand demarcated from the hand proper by the skin crease in line with the distal edge of finger webs. Examples: thumb, right middle finger, left little finger [FMA]. A digit found on the hands of humans and other primates used for manipulation and sensation [Wikipedia]." [Wikipedia:Finger] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "digit of hand" EXACT [] synonym: "digitus manus" EXACT [] synonym: "finger" EXACT [FMA:9666] synonym: "fore digit" EXACT [AAO:0000857, XAO:0003036] synonym: "forelimb digit" EXACT [] xref: AAO:0000857 xref: BTO:0004669 xref: EHDAA2:0000404 xref: FMA:9666 xref: GAID:57 xref: galen:Finger xref: MA:0000041 xref: MESH:A.01.378.800.667.430 xref: ncithesaurus:Finger xref: NIF_GrossAnatomy:nlx_anat_20090602 xref: OpenCyc:Mx4rvVi_f5wpEbGdrcN5Y29ycA xref: SCTID:283992002 xref: XAO:0003036 is_a: UBERON:0002544 ! implied link automatically realized ! digit is_a: UBERON:0005451 ! segment of hand relationship: part_of UBERON:0002102 intersection_of: UBERON:0002544 ! digit intersection_of: part_of UBERON:0002102 ! forelimb relationship: part_of UBERON:0002398 ! hand [Term] id: UBERON:0002390 name: hematopoietic system alt_id: UBERON:FMA_9667-MA_0002434-MIAA_0000022-XAO_0000122-ZFA_0005023 def: "The tissues concerned in production of the blood, including the bone marrow, liver, lymph nodes, spleen, and thymus[BTO]. Anatomical system that consists of the blood and blood forming tissues. The bodily system of organs and tissues, primarily the bone marrow, spleen, tonsils, and lymph nodes, involved in the production of blood[FD]." [BTO:0000570, http://www.thefreedictionary.com/hematopoietic+system, OMD:haematological, Wikipedia:Hematopoietic_system] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "Blutbildungssystem" RELATED [BTO:0000570] synonym: "haematological system" EXACT [] synonym: "haematopoietic system" RELATED [] synonym: "haemopoietic system" EXACT [] synonym: "hematological system" RELATED [] synonym: "hematolymphoid system" RELATED [] synonym: "hemopoietic system" RELATED [] synonym: "organa haemopoietica" EXACT [] xref: AAO:0011002 xref: BTO:0000570 xref: EFO:0000798 xref: EV:0100045 xref: FMA:9667 xref: GAID:1008 xref: MA:0002434 xref: MAT:0000022 xref: MESH:A.15.378 xref: MIAA:0000022 xref: ncithesaurus:Hematopoietic_System xref: OG:0001624 xref: SCTID:362587009 xref: TAO:0005023 xref: XAO:0000122 xref: ZFA:0005023 is_a: UBERON:0000467 ! anatomical system disjoint_from: UBERON:0000949 ! endocrine system disjoint_from: UBERON:0000990 ! reproductive system disjoint_from: UBERON:0001004 ! respiratory system disjoint_from: UBERON:0001007 ! digestive system disjoint_from: UBERON:0001008 ! excretory system disjoint_from: UBERON:0001009 ! circulatory system disjoint_from: UBERON:0001016 ! nervous system disjoint_from: UBERON:0001033 ! gustatory system disjoint_from: UBERON:0001434 ! skeletal system disjoint_from: UBERON:0002204 ! musculoskeletal system disjoint_from: UBERON:0002294 ! biliary system disjoint_from: UBERON:0002330 ! exocrine system disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system relationship: part_of UBERON:0002193 ! hemolymphoid system [Term] id: UBERON:0002391 name: lymph alt_id: UBERON:FMA_9671-MA_0002520-MIAA_0000055 def: "Transudate contained in the lumen of lymphatic vessel[FMA]. Lymph is the fluid that is formed when interstitial fluid enters the conduits of the lymphatic system[WP]." [FMA:9671, Wikipedia:Lymph] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: BTO:0000855 xref: EFO:0000871 xref: ENVO:02000041 xref: EV:0100049 xref: FMA:9671 xref: GAID:1186 xref: galen:Lymph xref: MA:0002520 xref: MAT:0000055 xref: MESH:A.12.207.630 xref: MIAA:0000055 xref: ncithesaurus:Lymph xref: OpenCyc:Mx4rvpDOU5wpEbGdrcN5Y29ycA is_a: UBERON:0000179 ! haemolymphatic fluid relationship: develops_from UBERON:0000913 ! interstitial fluid [Term] id: UBERON:0002392 name: nasolacrimal duct alt_id: UBERON:FMA_9703-MA_0001299 def: "The nasolacrimal duct (sometimes called tear duct) carries tears from the lacrimal sac into the nasal cavity. Excess tears flow through nasolacrimal duct which opens in the nose. This is the reason the nose starts to run when a person is crying or has watery eyes from an allergy, and why one can sometimes taste eye drops. Like the lacrimal sac, the duct is lined by stratified columnar epithelium containing mucus-secreting goblet cells, and is surrounded by connective tissue. Obstruction of the nasolacrimal duct leads to the excess overflow of tears called epiphora. A congenital obstruction can cause cystic expansion of the duct and is called a dacrocystocele or Timo cyst. Persons with dry eye conditions can be fitted with punctal plugs that seal the ducts to limit the amount of fluid drainage and retain moisture. The canal containing the nasolacrimal duct is called the nasolacrimal canal. [WP,unvetted]." [Wikipedia:Nasolacrimal_duct] comment: todo - resolve canaliculus vs tear duct vs lacrimal vs nasolacrimal subset: uberon_slim xref: AAO:0000643 xref: EHDAA:7849 xref: EHDAA:9094 xref: EHDAA2:0001237 xref: EMAPA:17853 xref: FMA:9703 xref: GAID:902 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cf/Gray896.png/200px-Gray896.png xref: MA:0001299 xref: MESH:A.09.371.463.640 xref: ncithesaurus:Nasolacrimal_Duct xref: OpenCyc:Mx4rv6PJy5wpEbGdrcN5Y29ycA xref: SCTID:280643009 is_a: UBERON:0000058 ! duct relationship: part_of UBERON:0001850 {source="FMA"} ! lacrimal duct [Term] id: UBERON:0002393 name: pharyngotympanic tube alt_id: UBERON:FMA_9705-MA_0000255-XAO_0000213 def: "Organ with organ cavity which connects the cavity of the middle ear to the cavity of the pharynx. Examples: There are only two pharyngotympanic tubes, the right and the left pharyngotympanic tubes.[FMA]" [FMA:FMA, Wikipedia:Pharyngotympanic_tube] comment: todo - AAO unvetted subset: organ_slim subset: uberon_slim synonym: "auditory tube" EXACT [] synonym: "eustachian tube" RELATED [] synonym: "internal auditory tube" EXACT [] synonym: "tuba auditiva" EXACT [FMA:9705, FMA:TA] synonym: "tuba auditoria" EXACT [FMA:9705, FMA:TA] xref: AAO:0000146 xref: EMAPA:17601 xref: EV:0100359 xref: FMA:9705 xref: GAID:869 xref: MA:0000255 xref: ncithesaurus:Eustachian_Tube xref: OG:0001145 xref: XAO:0000213 is_a: UBERON:0000062 ! organ relationship: part_of UBERON:0001756 ! middle ear [Term] id: UBERON:0002394 name: bile duct alt_id: UBERON:FMA_9706-MA_0000354-XAO_0000134 def: "Duct that carries bile from the liver to the small intestine." [Wikipedia:Bile_duct, ZFA:0001100] comment: The path is as follows: Bile canaliculi → Canals of Hering → interlobular bile ducts → intrahepatic bile ducts → left and right hepatic ducts merge to form → common hepatic duct exits liver and joins → cystic duct (from gall bladder) forming → common bile duct → joins with pancreatic duct → forming ampulla of Vater → enters duodenum [WP] subset: uberon_slim synonym: "gall duct" RELATED [BTO:0000122] synonym: "hepatic duct" RELATED [] xref: AAO:0011019 xref: BTO:0000122 xref: EHDAA2:0000741 xref: EV:0100091 xref: FMA:9706 xref: GAID:280 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5d/Digestive_system_showing_bile_duct.png/200px-Digestive_system_showing_bile_duct.png xref: MA:0000354 xref: MESH:A.03.159.183 xref: ncithesaurus:Bile_Duct xref: OG:0000212 xref: OpenCyc:Mx4rvdCds5wpEbGdrcN5Y29ycA xref: SCTID:276157007 xref: XAO:0000134 is_a: UBERON:0000058 ! duct is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003928 ! implied link automatically realized ! digestive system duct relationship: secretes UBERON:0001970 intersection_of: UBERON:0000058 ! duct intersection_of: secretes UBERON:0001970 ! bile relationship: develops_from UBERON:0008835 {source="XAO"} ! hepatic diverticulum relationship: part_of UBERON:0001173 {source="MA"} ! biliary tree relationship: part_of UBERON:0002294 ! biliary system [Term] id: UBERON:0002395 name: talus alt_id: UBERON:FMA_9708-MA_0001351 def: "The talus bone or astragalus is a bone in the tarsus of the foot that forms the lower part of the ankle joint through its articulations with the lateral and medial malleoli of the two bones of the lower leg, the tibia and fibula. Within the tarsus, it articulates with the calcaneus below and navicular in front. Through these articulations, it transmits the entire weight of the body to the foot. The second largest of the tarsal bones, it is also one of the bones in the human body with the highest percentage of its surface area covered by articular cartilage. Additionally, it is also unique in that it has a retrograde blood supply, i.e. arterial blood enters the bone at the distal end." [Wikipedia:Talus_bone] subset: uberon_slim synonym: "astragaloid bone" RELATED [BTO:0002354] synonym: "astragalus" RELATED [MA:000135, Wikipedia:Talus_bone] synonym: "astragalus bone" RELATED [Wikipedia:Talus_bone] synonym: "os tarsi tibiale" RELATED [BTO:0002354] xref: BTO:0002354 xref: EMAPA:18503 xref: EMAPA:19135 xref: FMA:9708 xref: GAID:196 xref: galen:Talus xref: MA:0001351 xref: MESH:A.02.835.232.300.710.780 xref: ncithesaurus:Talus xref: SCTID:182098005 is_a: UBERON:0001447 ! tarsal bone [Term] id: UBERON:0002396 name: vomer alt_id: UBERON:FMA_9710-MA_0001496 def: "The vomer is one of the unpaired facial bones of the skull. It is located in the midsagittal line, and articulates with the sphenoid, the ethmoid, the left and right palatine bones, and the left and right maxillary bones. [WP,unvetted]." [Wikipedia:Vomer] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "vomer bone" EXACT [] xref: AAO:0000633 xref: FMA:9710 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/77/Illu_facial_bones.jpg/200px-Illu_facial_bones.jpg xref: MA:0001496 xref: ncithesaurus:Vomer xref: OpenCyc:Mx4rv6jKWZwpEbGdrcN5Y29ycA xref: SCTID:272678009 xref: ZFA:0000308 is_a: UBERON:0003462 ! implied link automatically realized ! viscerocranium bone is_a: UBERON:0008001 {source="FMA"} ! irregular bone relationship: part_of UBERON:0001704 ! viscerocranium [Term] id: UBERON:0002397 name: maxilla alt_id: UBERON:FMA_9711-MA_0001491-ZFA_0000270 def: "Bone of upper jaw[Obol]. Paired, intramembranous bone located on the lateral sides of the skull, posterior to the premaxillae[AAO]. The dermal maxilla forms part of the upper jaw. It is first visible as a small dorsoventrally oriented rod of bone in the lateral region of the upper jaw. Through anterior ossification it becomes S-shaped, with its anteriormost tip directed medially (4.8 mm NL). The posteroventral end of the maxilla is connected to the dentary by a ligament. Maxillary teeth are absent in cypriniforms, but are present in other ostariophysans. . Two barbels are present on the maxilla. The presence of two pairs of maxillary barbels is considered by Cavender and Coburn (1992) to be the primitive condition for the Cyprinidae." [Wikipedia:Maxilla, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "maxillae" RELATED [] synonym: "upper jaw bone" EXACT [] xref: AAO:0000285 xref: EHDAA:8043 xref: EHDAA2:0001068 xref: EMAPA:17639 xref: EMAPA:17928 xref: FMA:9711 xref: GAID:220 xref: galen:Maxilla xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a7/Gray189.png/200px-Gray189.png xref: MA:0001491 xref: MESH:A.02.835.232.781.324.502.645 xref: ncithesaurus:Maxilla xref: OG:0001021 xref: SCTID:181813003 xref: TAO:0000270 xref: ZFA:0000270 is_a: UBERON:0002514 ! intramembranous bone is_a: UBERON:0003462 ! implied link automatically realized ! viscerocranium bone is_a: UBERON:0008193 {source="FMA"} ! pneumatized bone relationship: adjacent_to UBERON:0002244 relationship: part_of UBERON:0001709 intersection_of: UBERON:0001474 ! bone intersection_of: adjacent_to UBERON:0002244 ! premaxilla intersection_of: part_of UBERON:0001709 ! upper jaw relationship: develops_from UBERON:0004362 {source="Wikipedia"} ! mandibular arch relationship: part_of UBERON:0001709 ! upper jaw [Term] id: UBERON:0002398 name: hand alt_id: UBERON:FMA_9712-MA_0000037 def: "The hands are the two intricate, prehensile, multi-fingered body parts normally located at the end of each arm of a primate. They are the chief organs for physically manipulating the environment, used for both gross motor skills (such as grasping a large object) and fine motor skills (such as picking up a small pebble). The fingertips contain some of the densest areas of nerve endings on the body, are the richest source of tactile feedback, and have the greatest positioning capability of the body; thus the sense of touch is intimately associated with hands. Like other paired organs (eyes, ears, legs), each hand is dominantly controlled by the opposing brain hemisphere, and thus handedness, or preferred hand choice for single-handed activities such as writing with a pen, reflects a significant individual trait. Some evolutionary anatomists use hand to refer more generally to the appendage of digits on the forelimb, for example, in the context of whether the three digits of the bird hand involved the same homologous loss of two digits as in the dinosaur hand. [WP,unvetted]." [Wikipedia:Hand] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "arm autopod" EXACT [OBOL:automatic] synonym: "arm distal free limb segment" EXACT [OBOL:automatic] synonym: "autopod of arm" EXACT [OBOL:automatic] synonym: "autopod of brachial region" EXACT [OBOL:automatic] synonym: "autopod of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "brachial region autopod" EXACT [OBOL:automatic] synonym: "brachial region distal free limb segment" EXACT [OBOL:automatic] synonym: "distal free limb segment of arm" EXACT [OBOL:automatic] synonym: "distal free limb segment of brachial region" EXACT [OBOL:automatic] synonym: "distal free limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "fore paw" NARROW SENSU [EMAPA:17428, OBOL:automatic] synonym: "fore-paw" NARROW SENSU [EMAPA:17428] synonym: "forelimb autopod" EXACT [OBOL:automatic] synonym: "forelimb autopodium" EXACT [OBOL:automatic] synonym: "manus" EXACT [UBERON:cjm] synonym: "proximal segment of free upper limb autopod" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb distal free limb segment" EXACT [OBOL:automatic] synonym: "terminal segment of free upper limb" EXACT [] xref: AAO:0010803 xref: BTO:0004668 xref: EHDAA2:0000728 xref: EMAPA:17428 xref: FMA:9712 xref: GAID:56 xref: galen:Hand xref: MA:0000037 xref: MESH:A.01.378.800.667 xref: ncithesaurus:Hand xref: NIF_GrossAnatomy:nlx_anat_20090603 xref: OG:0000344 xref: OpenCyc:Mx4rvViGVZwpEbGdrcN5Y29ycA xref: SCTID:302539009 is_a: UBERON:0002470 ! implied link automatically realized ! autopod is_a: UBERON:0008785 ! implied link automatically realized ! upper limb segment relationship: part_of UBERON:0002102 intersection_of: UBERON:0002470 ! autopod intersection_of: part_of UBERON:0002102 ! forelimb [Term] id: UBERON:0002399 name: lesser omentum alt_id: UBERON:FMA_9715-MA_0001623 def: "The lesser omentum (small omentum; gastrohepatic omentum) is the double layer of peritoneum that extends from the liver to the lesser curvature of the stomach and the start of the duodenum. [WP,unvetted]." [Wikipedia:Lesser_omentum] comment: editor note: exact part of and develops from relationships need to be established subset: uberon_slim xref: EHDAA:4858 xref: EHDAA2:0000991 xref: EMAPA:17890 xref: EMAPA:18909 xref: EV:0100086 xref: FMA:9715 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cf/Gray984.png/200px-Gray984.png xref: MA:0001623 xref: ncithesaurus:Lesser_Omentum xref: OG:0000357 xref: SCTID:362712005 is_a: UBERON:0003688 ! omentum is_a: UBERON:0009034 ! implied link automatically realized ! stomach region relationship: develops_from UBERON:0005626 {source="Wikipedia"} ! ventral mesogastrium relationship: part_of UBERON:0001178 {source="FMA"} ! visceral peritoneum relationship: part_of UBERON:0005626 {source="MA"} ! ventral mesogastrium [Term] id: UBERON:0002400 name: parietal pleura alt_id: UBERON:FMA_9733-MA_0002488 def: "Parietal serous membrane which is continuous with the visceral pleura and is attached to the dome of the diaphragm.[FMA]" [FMA:FMA, Wikipedia:Parietal_pleura] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:9733 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray968.png/200px-Gray968.png xref: MA:0002488 xref: ncithesaurus:Parietal_Pleura xref: OG:0001495 xref: OpenCyc:Mx4rvv2Uq5wpEbGdrcN5Y29ycA xref: SCTID:361998003 is_a: UBERON:0000042 ! serous membrane is_a: UBERON:0000977 ! implied link automatically realized ! pleura relationship: part_of UBERON:0000977 ! pleura [Term] id: UBERON:0002401 name: visceral pleura alt_id: UBERON:FMA_9734-MA_0002489 def: "Visceral serous membrane which is continuous with the parietal pleura and is attached to the parenchyma of lobe of lung.[FMA]" [FMA:FMA, Wikipedia:Visceral_pleura] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "pleura pulmonalis" EXACT [FMA:9734, FMA:TA] synonym: "pleura visceralis (pulmonalis)" EXACT [] synonym: "pulmonary pleura" EXACT [] xref: FMA:9734 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray968.png/200px-Gray968.png xref: MA:0002489 xref: ncithesaurus:Visceral_Pleura xref: OpenCyc:Mx4rwNFqppwpEbGdrcN5Y29ycA xref: SCTID:361997008 is_a: UBERON:0000042 ! serous membrane is_a: UBERON:0000977 ! implied link automatically realized ! pleura relationship: part_of UBERON:0000977 ! pleura [Term] id: UBERON:0002402 name: pleural cavity alt_id: UBERON:FMA_9740-MA_0000055 def: "Cavity of serous sac surropunded by the pleura.[FMA]" [FMA:FMA, Wikipedia:Pleural_cavity] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: BTO:0004422 xref: EHDAA2:0001475 xref: EMAPA:18462 xref: FMA:9740 xref: GAID:95 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ab/Gray965.png/200px-Gray965.png xref: MA:0000055 xref: MESH:A.01.911.800.650 xref: ncithesaurus:Pleural_Cavity xref: OG:0000581 xref: OpenCyc:Mx4rwCKAppwpEbGdrcN5Y29ycA xref: SCTID:361999006 is_a: UBERON:0002323 ! implied link automatically realized ! body cavity relationship: part_of UBERON:0009778 intersection_of: UBERON:0002323 ! body cavity intersection_of: part_of UBERON:0009778 ! pleural sac relationship: develops_from UBERON:0003887 {source="Wikipedia"} ! intraembryonic coelom relationship: part_of UBERON:0009778 {source="FMA"} ! pleural sac [Term] id: UBERON:0002403 name: internal intercostal muscle alt_id: UBERON:FMA_9757-MA_0002326 def: "Intercostal muscles are several groups of muscles that run between the ribs, and help form and move the chest wall. There are three principal layers; the external intercostal muscles, which aid in quiet and forced inhalation. They originate on ribs 1-11 and have their insertion on ribs 2-12. The external intercostals are responsible for the elevation of the ribs, and expanding the transverse dimensions of the thoracic cavity. Located around the ribs the internal intercostal muscles, which aid in forced expiration (quiet expiration is a passive process). They originate on ribs 2-12 and have their insertions on ribs 1-11. The internal intercostals are responsible for the depression of the ribs decreasing the transverse dimensions of the thoracic cavity. the innermost intercostal muscle, the deep layers of the internal intercostal muscles which are separated from them by the neurovascular bundle. Both the external and internal muscles are innervated by the intercostal nerves, and are provided by the intercostal arteries and intercostal veins. Their fibers run in opposite directions. [WP,unvetted]." [Wikipedia:Internal_intercostal_muscle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "intercostal muscle internal layer" RELATED [] synonym: "intercostales internus" EXACT [] xref: EHDAA2:0000875 xref: FMA:9757 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f2/Gray411.png/200px-Gray411.png xref: MA:0002326 xref: ncithesaurus:Internal_Intercostal_Muscle xref: OG:0000905 xref: OpenCyc:Mx4rvlj6HZwpEbGdrcN5Y29ycA xref: SCTID:244890001 is_a: UBERON:0001111 ! intercostal muscle [Term] id: UBERON:0002404 name: transversus thoracis alt_id: UBERON:FMA_9760-MA_0002397 def: "The tranversus thoracis lies internal to the thoracic cage, anteriorly. It is a thin plane of muscular and tendinous fibers, situated upon the inner surface of the front wall of the chest. It is in the same layer as the subcostal muscles. It arises on either side from the lower third of the posterior surface of the body of the sternum, from the posterior surface of the xiphoid process, and from the sternal ends of the costal cartilages of the lower three or four true ribs. Its fibers diverge upward and lateralward, to be inserted by slips into the lower borders and inner surfaces of the costal cartilages of the second, third, fourth, fifth, and sixth ribs. The lowest fibers of this muscle are horizontal in their direction, and are continuous with those of the Transversus abdominis; the intermediate fibers are oblique, while the highest are almost vertical. This muscle varies in its attachments, not only in different subjects, but on opposite sides of the same subject. [WP,unvetted]." [Wikipedia:Transversus_thoracis] comment: This class was created automatically from a combination of ontologies subset: organ_slim subset: uberon_slim xref: EMAPA:19267 xref: FMA:9760 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ef/Transversus_thoracis.png/200px-Transversus_thoracis.png xref: MA:0002397 xref: ncithesaurus:Transversus_Thoracis xref: SCTID:244933000 is_a: UBERON:0002426 ! chest muscle [Term] id: UBERON:0002405 name: immune system alt_id: UBERON:FMA_9825-MA_0002711-XAO_0003152-ZFA_0001159 def: "Anatomical system that protects the body from foreign substances, cells, and tissues by producing the immune response and that includes especially the thymus, spleen, lymphoid tissue, lymphocytes including the B cells and T cells, and antibodies." [NLM:immune+system, Wikipedia:Immune_system] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core xref: AAO:0011003 xref: BILA:0000104 xref: FMA:9825 xref: GAID:328 xref: MA:0002711 xref: MESH:A.15.382 xref: ncithesaurus:Immune_System xref: OG:0001247 xref: OpenCyc:Mx4rvWNkm5wpEbGdrcN5Y29ycA xref: SCTID:362590003 xref: TAO:0001159 xref: XAO:0003152 xref: ZFA:0001159 is_a: UBERON:0000467 ! anatomical system disjoint_from: UBERON:0000949 ! endocrine system disjoint_from: UBERON:0000990 ! reproductive system disjoint_from: UBERON:0001004 ! respiratory system disjoint_from: UBERON:0001007 ! digestive system disjoint_from: UBERON:0001008 ! excretory system disjoint_from: UBERON:0001009 ! circulatory system disjoint_from: UBERON:0001016 ! nervous system disjoint_from: UBERON:0001033 ! gustatory system disjoint_from: UBERON:0001434 ! skeletal system disjoint_from: UBERON:0002204 ! musculoskeletal system disjoint_from: UBERON:0002294 ! biliary system disjoint_from: UBERON:0002330 ! exocrine system disjoint_from: UBERON:0002390 ! hematopoietic system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system [Term] id: UBERON:0002406 name: pericardial sac alt_id: UBERON:FMA_9868-ZFA_0000054 def: "Serous sac, which has as parts the serous pericardium and the pericardial cavity [FMA]." [FMA:9868, Wikipedia:Pericardial_sac] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "pericardium" RELATED [] xref: EHDAA2:0001443 xref: FMA:9868 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Gray489.png/200px-Gray489.png xref: SCTID:361326002 xref: TAO:0000054 is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0005906 ! serous sac relationship: part_of UBERON:0001009 ! circulatory system relationship: part_of UBERON:0002407 ! pericardium [Term] id: UBERON:0002407 name: pericardium alt_id: UBERON:FMA_9869-MA_0000099 def: "The outer membrane/wall of the developing heart, surrounding the myocardium. Peritoneum that surrounds the heart.[AAO]" [AAO:0010817, Wikipedia:Pericardium] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core xref: AAO:0010817 xref: BTO:0000717 xref: EFO:0000820 xref: EHDAA:5376 xref: EHDAA2:0001443 xref: EMAPA:17174 xref: EV:0100023 xref: FMA:9869 xref: GAID:569 xref: galen:Pericardium xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Gray489.png/200px-Gray489.png xref: MA:0000099 xref: MAT:0000454 xref: MESH:A.07.541.795 xref: ncithesaurus:Pericardium xref: OG:0001280 xref: OpenCyc:Mx4rvoCLgJwpEbGdrcN5Y29ycA xref: SCTID:181295003 xref: XAO:0004182 xref: ZFA:0000054 is_a: UBERON:0000483 {source="GO"} ! epithelium is_a: UBERON:0004457 ! cavity lining is_a: UBERON:0005983 ! implied link automatically realized ! heart layer relationship: adjacent_to UBERON:0002349 ! myocardium relationship: part_of UBERON:0000948 {source="XAO"} ! heart [Term] id: UBERON:0002408 name: parietal serous pericardium alt_id: UBERON:FMA_9870-MA_0000483 def: "Parietal serous membrane which is continuous with the visceral serous pericardium and is attached to the central tendon of diaphragm.[FMA]" [FMA:FMA, Wikipedia:Parietal_pericardium] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "lamina parietalis (pericardii serosum)" EXACT [] synonym: "lamina parietalis pericardii" EXACT [FMA:9870, FMA:TA] synonym: "parietal layer of serous pericardium" EXACT [] synonym: "parietal pericardium" EXACT [] xref: EHDAA:3422 xref: EHDAA:5378 xref: EMAPA:17175 xref: EMAPA:19031 xref: FMA:9870 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Gray489.png/200px-Gray489.png xref: MA:0000483 xref: OG:0000537 xref: SCTID:243956000 is_a: UBERON:0000042 ! serous membrane is_a: UBERON:0005983 ! implied link automatically realized ! heart layer relationship: part_of UBERON:0002357 ! serous pericardium [Term] id: UBERON:0002409 name: pericardial fluid alt_id: UBERON:FMA_9887-MA_0002530 def: "Transudate contained in the pericardial cavity.[FMA]" [FMA:9887, Wikipedia:Pericardial_fluid] subset: uberon_slim xref: BTO:0001016 xref: FMA:9887 xref: MA:0002530 is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0002410 name: autonomic nervous system alt_id: UBERON:FMA_9905-MA_0000219-ZFA_0001574 def: "The autonomic nervous system is composed of neurons that are not under conscious control, and is comprised of two antagonistic components, the sympathetic and parasympathetic nervous systems. The autonomic nervous system regulates key functions including the activity of the cardiac (heart) muscle, smooth muscles (e.g. of the gut), and glands[GO]." [Wikipedia:Autonomic_nervous_system] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "ANS" RELATED [] synonym: "visceral nervous system" EXACT [] xref: AAO:0000033 xref: BTO:0002507 xref: EHDA:10095 xref: EHDAA:3767 xref: EMAPA:16984 xref: FMA:9905 xref: GAID:706 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f7/Gray839.png/200px-Gray839.png xref: MA:0000219 xref: MESH:A.08.800.050 xref: ncithesaurus:Autonomic_Nervous_System xref: NIF_GrossAnatomy:birnlex_1123 xref: OG:0000396 xref: SCTID:362481007 xref: TAO:0001574 xref: ZFA:0001574 is_a: UBERON:0000073 ! regional part of nervous system relationship: part_of UBERON:0000010 ! peripheral nervous system relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0002411 name: clitoris alt_id: UBERON:FMA_9909-MA_0000382 def: "The clitoris is a sexual organ that is present only in female mammals. In humans, the visible button-like portion is located near the anterior junction of the labia minora, above the opening of the urethra and vagina. Unlike the penis, which is homologous to the clitoris, the clitoris does not contain the distal portion of the urethra. The only known exception to this is in the Spotted Hyena. In this species, the urogenital system is unique in that the female urinates, mates and gives birth via an enlarged, erectile clitoris, known as a pseudo-penis. In humans, the clitoris is the most sensitive erogenous zone of a woman, the stimulation of which may produce sexual excitement and clitoral erection; its continuing stimulation may produce sexual pleasure in the woman and orgasm. [WP,unvetted]." [Wikipedia:Clitoris] subset: organ_slim subset: uberon_slim xref: BTO:0002020 xref: EHDAA:9360 xref: EHDAA2:0000255 xref: EMAPA:30819 xref: FMA:9909 xref: GAID:385 xref: galen:Clitoris xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cf/Clitoris_anatomy_labeled-en.svg/200px-Clitoris_anatomy_labeled-en.svg.png xref: MA:0000382 xref: MESH:A.05.360.319.887.436 xref: ncithesaurus:Clitoris xref: OG:0000700 xref: OpenCyc:Mx4rvVjr6ZwpEbGdrcN5Y29ycA xref: SCTID:181442003 is_a: UBERON:0000062 {source="Wikipedia"} ! organ is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: develops_from UBERON:0005876 {source="Wikipedia"} ! genital tubercle relationship: part_of UBERON:0000997 {source="MA"} ! mammalian vulva [Term] id: UBERON:0002412 name: vertebra alt_id: UBERON:FMA_9914-MA_0000309-ZFA_0001189 def: "Irregular bone that articulates with other vertebrae, or with one other vertebra and the skull or the sacrum[FMA]. All serially repeated ossified, cartilaginous, and ligamentous elements around the notochord (Schultze and Arratia, 1988)[ZFA]." [FMA:9914, Wikipedia:Vertebra, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core xref: AAO:0000691 xref: EFO:0001371 xref: FMA:9914 xref: galen:Vertebra xref: MA:0000309 xref: ncithesaurus:Vertebra xref: OG:0001143 xref: OpenCyc:Mx4rvt2Dh5wpEbGdrcN5Y29ycA xref: SCTID:181817002 xref: TAO:0001189 xref: XAO:0004019 xref: ZFA:0001189 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004247 ! implied link automatically realized ! back bone is_a: UBERON:0008001 {source="FMA"} ! irregular bone relationship: part_of UBERON:0001130 ! vertebral column [Term] id: UBERON:0002413 name: cervical vertebra alt_id: UBERON:FMA_9915-MA_0000311-XAO_0003076 def: "A vertebra immediately inferior to the skull[WP]." [Wikipedia:Cervical_vertebra] comment: In some species, some parts of the skull may be composed of vertebra-like elements, e.g. the occipital bone in humans is composed of four vertebra-like segments. In many vertebrate species, cervical vertebrae are variable in number; however, almost all mammals have seven (including those with very short necks relative to body size, such as elephants or whales, and those with very long necks, such as giraffes). The few exceptions include the manatee and the sloths, of which the two-toed sloth has six cervical vertebrae and the three-toed sloth has up to nine cervical vertebrae. In many species, though not in mammals, the cervical vertebrae bear ribs. In many other groups, such as lizards and saurischian dinosaurs, the cervical ribs are large; in birds they are small and completely fused to the vertebrae. The transverse processes of mammals are homologous to the cervical ribs of other amniotes. Thoracic vertebrae in all species are defined as those vertebrae which also carry a pair of ribs, and lie caudal to the cervical vertebrae. n humans, cervical vertebrae are the smallest of the true vertebrae, and can be readily distinguished from those of the thoracic or lumbar regions by the presence of a foramen (hole) in each transverse process, through which passes the vertebral artery. subset: uberon_slim synonym: "cervical vertebrae" EXACT PLURAL [] xref: EMAPA:17674 xref: FMA:9915 xref: GAID:235 xref: galen:CervicalVertebra xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f8/Illu_vertebral_column.jpg/200px-Illu_vertebral_column.jpg xref: MA:0000311 xref: MESH:A.02.835.232.834.151 xref: ncithesaurus:Cervical_Vertebra xref: SCTID:181820005 xref: XAO:0003076 is_a: UBERON:0002412 ! implied link automatically realized ! vertebra is_a: UBERON:0003458 ! implied link automatically realized ! neck bone relationship: part_of UBERON:0006072 intersection_of: UBERON:0002412 ! vertebra intersection_of: part_of UBERON:0006072 ! cervical region of vertebral column relationship: part_of UBERON:0000974 ! neck [Term] id: UBERON:0002414 name: lumbar vertebra alt_id: UBERON:FMA_9921-MA_0000312 def: "Large vertebra of the movable part of the vertebral column, characterized by the absence of the foramen transversarium within the transverse process, and by the absence of facets on the sides of the body." [Wikipedia:Lumbar_vertebra] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: EMAPA:18007 xref: FMA:9921 xref: GAID:240 xref: galen:LumbarVertebra xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c8/Gray93.png/200px-Gray93.png xref: MA:0000312 xref: MESH:A.02.835.232.834.519 xref: ncithesaurus:Lumbar_Vertebra xref: OpenCyc:Mx4rvaOek5wpEbGdrcN5Y29ycA xref: SCTID:181822002 is_a: UBERON:0002412 ! implied link automatically realized ! vertebra is_a: UBERON:0003828 ! implied link automatically realized ! abdominal segment bone relationship: part_of UBERON:0006074 intersection_of: UBERON:0002412 ! vertebra intersection_of: part_of UBERON:0006074 ! lumbar region of vertebral column [Term] id: UBERON:0002415 name: tail alt_id: UBERON:MA_0000008-MIAA_0000094-WBbt_0005741-XAO_0003026-ZFA_0001117 def: "section at the rear end of an animal's body; in general, the term refers to a distinct, flexible appendage to the torso[WP]." [ISBN:0471209627, OMD:tail, Wikipedia:Tail, ZFIN:curator] comment: currently defined very generally, inclusive of caudal fin subset: grouping_class subset: uberon_slim synonym: "caudal subdivision" EXACT [UBERON:cjm] synonym: "post-vent region" EXACT [ZFA:0001117] xref: AAO:0010338 xref: AEO:0000109 xref: BTO:0001348 xref: EFO:0000963 xref: EHDAA:9198 xref: GAID:1245 xref: MAT:0000094 xref: MESH:A.13.895 xref: MIAA:0000094 xref: ncithesaurus:Tail xref: OpenCyc:Mx4rvVjiC5wpEbGdrcN5Y29ycA xref: WBbt:0005741 is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0000154 ! posterior region of body [Term] id: UBERON:0002416 name: integumental system alt_id: UBERON:MA_0000014-FMA_72979 def: "organ system that protects the body from damage, comprising the skin and its appendages (including hair, scales, and nails). The integumentary system has a variety of functions; it may serve to waterproof, cushion and protect the deeper tissues, excrete wastes, regulate temperature and is the location of receptors for pain, sensation, pressure and temperature. In humans the integumentary system additionally provides vitamin D synthesis[WP]." [Wikipedia:Integumentary_system] comment: in FMA, integumentary system = integument + certain glands. Note that here we use integumental system in a general sense subset: grouping_class synonym: "integumentary system" EXACT [FMA:72979] xref: EFO:0000807 xref: EHDAA:6520 xref: EHDAA2:0000836 xref: EMAPA:17524 xref: EV:0100151 xref: FBbt:00004969 xref: FMA:72979 xref: HAO:0000421 xref: MA:0000014 xref: MAT:0000033 xref: MESH:A.17 xref: ncithesaurus:Integumentary_System xref: OG:0000403 xref: SCTID:361692004 xref: TADS:0000108 xref: XAO:0000176 is_a: UBERON:0000467 ! anatomical system disjoint_from: UBERON:0000949 ! endocrine system disjoint_from: UBERON:0000990 ! reproductive system disjoint_from: UBERON:0001004 ! respiratory system disjoint_from: UBERON:0001007 ! digestive system disjoint_from: UBERON:0001008 ! excretory system disjoint_from: UBERON:0001009 ! circulatory system disjoint_from: UBERON:0001016 ! nervous system disjoint_from: UBERON:0001033 ! gustatory system disjoint_from: UBERON:0001434 ! skeletal system disjoint_from: UBERON:0002204 ! musculoskeletal system disjoint_from: UBERON:0002294 ! biliary system disjoint_from: UBERON:0002330 ! exocrine system disjoint_from: UBERON:0002390 ! hematopoietic system disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system [Term] id: UBERON:0002417 name: abdominal segment of trunk alt_id: UBERON:MA_0000021-FMA_259211 def: "the abdominal segment of the torso." [Wikipedia:Lumbar] synonym: "abdomen/pelvis/perineum" RELATED [MA:0000021] synonym: "lower body" RELATED [MA:0000021] synonym: "lumbar region" RELATED [UBERON:cjm] xref: FMA:259211 xref: MA:0000021 is_a: UBERON:0009569 {source="FMA"} ! subdivision of trunk [Term] id: UBERON:0002418 name: cartilage tissue alt_id: UBERON:MA_0000104-MIAA_0000189-XAO_0000170 def: "A portion of connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate[GO]. Regular connective tissue, which consists of chondrocytes and related cells, the intercellular matrix of which is chondrified. Examples: hyaline cartilage, fibrocartilage, elastic cartilage[FMA]. an avascular supporting and articular skeletal tissue. It also functions as the primary endoskeletal support in vertebrate embryos. Cartilage is deposited by and is composed of chondroblasts and chondrocytes separated by an extracellular matrix, which may or may not mineralize depending on cartilage type, age, or taxon[Hall and Witten]." [FMA:37377, GO:0051216, http://sourceforge.net/tracker/?func=detail&atid=2257941&aid=3396584&group_id=76834, Wikipedia:Cartilage] comment: see also FMA:71500 Set of cartilages, FMA:55107 Cartilage organ, FMA:12264 Articular cartilage. // elements made from cartilage, cartilage-like, or chondroid tissues evolved in invertebrates[H&W] subset: uberon_slim subset: vertebrate_core synonym: "cartilage tissue" EXACT [FMA:37377] synonym: "cartilaginous tissue" EXACT [] xref: AAO:0000060 xref: AEO:0000087 xref: BTO:0000206 xref: EFO:0000949 xref: EHDAA2:0003087 xref: EV:0100141 xref: FMA:37377 xref: GAID:99 xref: galen:Cartilage xref: MA:0000104 xref: MAT:0000189 xref: MESH:A.02.165 xref: MIAA:0000189 xref: ncithesaurus:Cartilage xref: OG:0001207 xref: OpenCyc:Mx4rvVjeOZwpEbGdrcN5Y29ycA xref: SCTID:309312004 xref: TAO:0001501 xref: VAO:0000040 xref: XAO:0000170 xref: ZFA:0001501 is_a: UBERON:0002384 ! connective tissue is_a: UBERON:0004755 ! skeletal tissue relationship: part_of UBERON:0002204 ! musculoskeletal system [Term] id: UBERON:0002419 name: skin gland alt_id: UBERON:MA_0000146-FMA_71878 def: "A gland that is part of a skin of body [Obol]." [OBOL:automatic] comment: check FMA, use plural for now as general class not there subset: organ_slim synonym: "glandulae cutis" EXACT [FMA:71878, FMA:TA] synonym: "skin glands" RELATED PLURAL [] synonym: "skin glands set" RELATED PLURAL [] xref: FMA:71878 xref: MA:0000146 is_a: UBERON:0003297 ! implied link automatically realized ! gland of integumental system relationship: part_of UBERON:0002097 intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0002097 ! skin of body [Term] id: UBERON:0002420 name: basal ganglion def: "one of a group of nuclei in the brains of vertebrates, situated at the base of the forebrain and strongly connected with the cerebral cortex, thalamus and other areas.ganglion in the head. The main components of the basal ganglia are the striatum, pallidum, substantia nigra, and subthalamic nucleus[WP]. Subcortical masses of gray matter in the forebrain and midbrain that are richly interconnected and so viewed as a functional system. The nuclei usually included are the caudate nucleus (caudoputamen in rodents), putamen, globus pallidus, substantia nigra (pars compacta and pars reticulata) and the subthalamic nucleus. Some also include the nucleus accumbens and ventral pallidum[NIF]." [Wikipedia:Basal_ganglia] comment: Note that some AOs say this is a subclass of ganglion, but this is not correct. FMA has this as a 'nuclear complex of neuraxis', which is not in Uberon, we use 'neural nucleus' subset: uberon_slim synonym: "basal ganglia" RELATED PLURAL [] synonym: "basal ganglion of telencephalon" EXACT [] synonym: "basal nucleus" RELATED [] synonym: "basasl nucleus" BROAD [] xref: BTO:0000235 xref: EFO:0000904 xref: FMA:62514 xref: GAID:617 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/Basal_Ganglia_and_Related_Structures.svg/200px-Basal_Ganglia_and_Related_Structures.svg.png xref: MA:0000184 xref: ncithesaurus:Basal_Ganglia xref: NIF_GrossAnatomy:birnlex_826 xref: SCTID:244434001 is_a: UBERON:0000125 ! neural nucleus is_a: UBERON:0009663 ! implied link automatically realized ! telencephalic nucleus relationship: part_of UBERON:0001893 {source="NIF"} ! telencephalon [Term] id: UBERON:0002421 name: hippocampal formation alt_id: UBERON:MA_0000189-FMA_74038 def: "Hippocampus (proper) plus dentate gyrus and subiculum[definition derived from NIF comments and ontology alignment]." [UBERON:cjm] comment: The term hippocampus is often used synonymously with hippocampal formation which consists of the hippocampus proper or Cornu Ammonis, the dentate gyrus and the subiculum[NIF]. BTO:0000601 is placed here since it includes the DG. GO also includes dentate gyrus development as part of hippocampus development, so we assume when GO says "hippocampus" it means "hippocampal formation". In ABA HPF = (.. subiculum) + HIP, HIP = DG + AH. subset: uberon_slim synonym: "archipallium" RELATED [MA:0000189] synonym: "hippocampus" NARROW [BTO:0000601, GO:0021766] synonym: "hippocampus (crosby)" EXACT [] synonym: "major hippocampus" RELATED [BTO:0000601] synonym: "primal cortex" RELATED [MA:0000189] xref: ABA:HPF xref: BM:Tel-HF xref: BTO:0000601 xref: FMA:74038 xref: MA:0000189 xref: NIF_GrossAnatomy:birnlex_715 xref: SCTID:422867004 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0000203 {source="GO"} ! pallium relationship: part_of UBERON:0001893 {source="MA"} ! telencephalon relationship: spatially_disjoint_from UBERON:0001950 {source="ABA"} ! neocortex relationship: spatially_disjoint_from UBERON:0002264 {source="ABA"} ! olfactory bulb [Term] id: UBERON:0002422 name: fourth ventricle alt_id: UBERON:MA_0000196-FMA_78469 def: "The fourth ventricle is an irregularly shaped cavity in the rhombencephalon, between the medulla oblongata, the pons, and the isthmus in front, and the cerebellum behind. It is continuous with the central canal of the cord below and with the cerebral aqueduct above, and through its lateral and median apertures it communicates with the subarachnoid space[GO]." [Wikipedia:Fourth_ventricle] subset: uberon_slim subset: vertebrate_core synonym: "4th ventricle" RELATED [MA:0000196] synonym: "rhombencephalic vesicle" EXACT [ZFA:0000110] synonym: "ventricle IV" EXACT [ZFA:0000110] synonym: "ventricle of hindbrain" RELATED [BTO:0003426] synonym: "ventricle of rhombencephalon" RELATED [BTO:0003426] synonym: "ventriculus quartus" RELATED [BTO:0003426] xref: AAO:0011043 xref: BM:Pons-4V xref: BTO:0003426 xref: EHDAA:896 xref: EHDAA2:0000100 xref: EMAPA:16479 xref: EMAPA:16917 xref: EV:0100310 xref: FMA:78469 xref: GAID:610 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Gray734.png/200px-Gray734.png xref: MA:0000196 xref: MESH:A.08.186.211.276.500 xref: ncithesaurus:Fourth_Ventricle_of_the_Brain xref: NIF_GrossAnatomy:birnlex_1256 xref: OG:0000006 xref: OpenCyc:Mx4rv-7Q6pwpEbGdrcN5Y29ycA xref: SCTID:180932000 xref: XAO:0003099 xref: ZFA:0000110 is_a: UBERON:0004086 ! brain ventricle relationship: part_of UBERON:0002028 ! hindbrain [Term] id: UBERON:0002423 name: hepatobiliary system alt_id: UBERON:MA_0000324-MIAA_0000024-XAO_0000132-ZFA_0000036 def: "The hepaticobiliary system is responsible for metabolic and catabolic processing of small molecules absorbed from the blood or gut, hormones and serum proteins, detoxification, storage of glycogen, triglycerides, metals and lipid soluble vitamins and excretion of bile. Included are the synthesis of albumin, blood coagulation factors, complement, and specific binding proteins. The parts are: liver, bile duct, gall bladder and hepatic duct" [GO:0061008, Wikipedia:Hepatobiliary_system] subset: uberon_slim subset: vertebrate_core synonym: "hepaticobiliary system" EXACT [GO:0061008] synonym: "liver and biliary system" EXACT [] synonym: "liver/biliary system" RELATED [] xref: AAO:0011056 xref: EFO:0000800 xref: EHDAA:2189 xref: EHDAA2:0000998 xref: EMAPA:16840 xref: EV:0100088 xref: MA:0000324 xref: MAT:0000024 xref: MIAA:0000024 xref: ncithesaurus:Hepatobiliary_System xref: OG:0000294 xref: TAO:0000036 xref: XAO:0000132 xref: ZFA:0000036 is_a: UBERON:0000467 ! anatomical system disjoint_from: UBERON:0000949 ! endocrine system disjoint_from: UBERON:0000990 ! reproductive system disjoint_from: UBERON:0001004 ! respiratory system disjoint_from: UBERON:0001007 ! digestive system disjoint_from: UBERON:0001008 ! excretory system disjoint_from: UBERON:0001009 ! circulatory system disjoint_from: UBERON:0001016 ! nervous system disjoint_from: UBERON:0001033 ! gustatory system disjoint_from: UBERON:0001434 ! skeletal system disjoint_from: UBERON:0002204 ! musculoskeletal system disjoint_from: UBERON:0002294 ! biliary system disjoint_from: UBERON:0002330 ! exocrine system disjoint_from: UBERON:0002390 ! hematopoietic system disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0004456 ! entire sense organ system relationship: part_of UBERON:0001007 ! digestive system [Term] id: UBERON:0002424 name: oral epithelium alt_id: UBERON:MA_0000344-ZFA_0000816 subset: vertebrate_core xref: AAO:0010357 xref: BTO:0001775 xref: EHDAA:2187 xref: EHDAA2:0001325 xref: EMAPA:16839 xref: EMAPA:26942 xref: MA:0000344 xref: OG:0000187 xref: XAO:0003201 xref: ZFA:0000816 is_a: UBERON:0000483 ! epithelium is_a: UBERON:0003350 ! implied link automatically realized ! epithelium of mucosa is_a: UBERON:0003929 ! implied link automatically realized ! gut epithelium is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0004807 ! implied link automatically realized ! respiratory system epithelium relationship: part_of UBERON:0000166 ! oral opening relationship: part_of UBERON:0003729 ! mouth mucosa [Term] id: UBERON:0002425 name: visceral serous pericardium alt_id: UBERON:MA_0000484-FMA_84882 def: "Visceral serous membrane which is continuous with the parietal serous pericardium and is attached to the myocardium[FMA]." [Wikipedia:Visceral_pericardium] subset: uberon_slim synonym: "epicardium" RELATED [MA:0000484] synonym: "visceral lamina of serous pericardium" EXACT [] synonym: "visceral layer of serous pericardium" EXACT [] synonym: "visceral pericardium" EXACT [] xref: AAO:0010409 xref: EHDAA2:0002202 xref: EMAPA:17176 xref: EMAPA:19032 xref: FMA:84882 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray968.png/200px-Gray968.png xref: MA:0000484 xref: OG:0000538 xref: SCTID:243955001 is_a: UBERON:0002357 ! serous pericardium relationship: attached_to UBERON:0002349 ! myocardium [Term] id: UBERON:0002426 name: chest muscle alt_id: UBERON:MA_0000548-FMA_9619 def: "A muscle organ that is part of a chest [Obol]." [OBOL:automatic] synonym: "anterior thoracic region muscle organ" EXACT [OBOL:automatic] synonym: "anterolateral part of thorax muscle organ" EXACT [OBOL:automatic] synonym: "chest muscle organ" EXACT [OBOL:automatic] synonym: "front of thorax muscle organ" EXACT [OBOL:automatic] synonym: "muscle of thorax" EXACT [FMA:9619] synonym: "muscle organ of anterior thoracic region" EXACT [OBOL:automatic] synonym: "muscle organ of anterolateral part of thorax" EXACT [OBOL:automatic] synonym: "muscle organ of chest" EXACT [OBOL:automatic] synonym: "muscle organ of front of thorax" EXACT [OBOL:automatic] synonym: "musculus thoracicus" EXACT [] synonym: "thoracic muscle" EXACT [] xref: BTO:0000508 xref: FMA:9619 xref: MA:0000548 is_a: UBERON:0001774 ! muscle of trunk is_a: UBERON:0003830 ! implied link automatically realized ! thoracic segment muscle is_a: UBERON:0005175 ! implied link automatically realized ! chest organ relationship: part_of UBERON:0001443 intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0001443 ! chest relationship: part_of UBERON:0001443 ! chest [Term] id: UBERON:0002427 name: arm skin alt_id: UBERON:MA_0000596-FMA_37721 def: "A zone of skin that is part of an arm [Obol]." [OBOL:automatic] synonym: "brachial region skin" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb skin" EXACT [OBOL:automatic] synonym: "skin of arm" EXACT [OBOL:automatic] synonym: "skin of brachial region" EXACT [OBOL:automatic] synonym: "skin of proximal segment of free upper limb" EXACT [OBOL:automatic] xref: EMAPA:18062 xref: FMA:37721 xref: MA:0000596 xref: ncithesaurus:Arm_Skin is_a: UBERON:0000014 ! zone of skin is_a: UBERON:0003531 ! implied link automatically realized ! forelimb skin relationship: part_of UBERON:0001460 intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0001460 ! arm relationship: part_of UBERON:0001460 ! arm [Term] id: UBERON:0002428 name: limb bone alt_id: UBERON:MA_0000688-MIAA_0000151 def: "A bone that is part of a limb [Obol]." [OBOL:automatic] comment: Note that the formal definition is very inclusive, and includes sesamoids synonym: "bone of limb" EXACT [OBOL:automatic] synonym: "bone organ of limb" EXACT [OBOL:automatic] synonym: "limb bone organ" EXACT [OBOL:automatic] synonym: "limb skeleton" RELATED [] xref: EFO:0000880 xref: EFO:0000945 xref: EHDAA2:0002221 xref: MA:0000688 xref: MAT:0000151 xref: MIAA:0000151 is_a: UBERON:0001474 ! bone is_a: UBERON:0004375 ! implied link automatically realized ! bone of appendage relationship: part_of UBERON:0002101 intersection_of: UBERON:0001474 ! bone intersection_of: part_of UBERON:0002101 ! limb relationship: part_of UBERON:0002091 ! appendicular skeleton relationship: part_of UBERON:0002101 ! limb [Term] id: UBERON:0002429 name: cervical lymph node alt_id: UBERON:MA_0000736-FMA_61213 def: "Cervical lymph nodes are lymph nodes found in the neck. [WP,unvetted]." [Wikipedia:Cervical_lymph_node] subset: uberon_slim synonym: "lymph node of neck" EXACT [] xref: FMA:61213 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4c/Lymph_node_regions.jpg/200px-Lymph_node_regions.jpg xref: MA:0000736 xref: ncithesaurus:Cervical_Lymph_Node xref: SCTID:181757009 is_a: UBERON:0000029 ! implied link automatically realized ! lymph node relationship: part_of UBERON:0000974 intersection_of: UBERON:0000029 ! lymph node intersection_of: part_of UBERON:0000974 ! neck [Term] id: UBERON:0002430 name: lateral hypothalamic area alt_id: UBERON:MA_0000834-FMA_62030 def: "The lateral hypothalamus or lateral hypothalamic area is a part of the hypothalamus. It is concerned with hunger. Damage to this area can cause reduced food intake. Stimulating the lateral hypothalamus causes a desire to eat, while stimulating the ventromedial hypothalamus causes a desire to stop eating. [WP,unvetted]." [Wikipedia:Lateral_hypothalamic_area] subset: uberon_slim synonym: "area hypothalamica lateralis" EXACT [FMA:62030, FMA:TA] synonym: "lateral division of hypothalamus" EXACT [] synonym: "lateral group of hypothalamic nuclei" EXACT [] synonym: "lateral hypothalamic group" EXACT [] synonym: "lateral hypothalamic nucleus" RELATED [MA:0000834] synonym: "lateral hypothalamic region" EXACT [FMA:62030] synonym: "lateral hypothalamic zone (crosby)" EXACT [] xref: ABA:LHA xref: BM:Die-Hy-HLA xref: FMA:62030 xref: GAID:640 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/HypothalamicNuclei.PNG/200px-HypothalamicNuclei.PNG xref: MA:0000834 xref: MESH:A.08.186.211.730.385.357.300 xref: NIF_GrossAnatomy:birnlex_4037 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0002273 ! lateral zone of hypothalamus relationship: spatially_disjoint_from UBERON:0001906 {source="ABA"} ! subthalamic nucleus relationship: spatially_disjoint_from UBERON:0001907 {source="ABA"} ! zona incerta relationship: spatially_disjoint_from UBERON:0001931 {source="ABA"} ! lateral preoptic nucleus relationship: spatially_disjoint_from UBERON:0001933 {source="ABA"} ! retrochiasmatic area [Term] id: UBERON:0002431 name: pars anterior alt_id: UBERON:MA_0000854-ZFA_0001195 is_obsolete: true consider: UBERON:0006965 [Term] id: UBERON:0002432 name: pars intermedia of adenohypophysis alt_id: UBERON:MA_0000855-ZFA_0001197 def: "boundary between the anterior and posterior lobes of the pituitary. It contains three types of cells: basophils, chromophobes, and colloid-filled cysts. The cysts are the remainder of Rathke's pouch. In human fetal life, this area produces melanocyte stimulating hormone or MSH which causes the release of melanin pigment in skin melanocytes (pigment cells). However, the pars intermedia is normally either very small or entirely absent in adulthood. In lower vertebrates (fish, amphibians) MSH from the pars intermedia is responsible for darkening of the skin, often in response to changes in background color. This color change is due to MSH stimulating the dispersion of melanin pigment in dermal (skin) melanophore cells." [Wikipedia:Pars_intermedia] comment: The intermediate part of adenohypophysis: an ill-defined region between the two lobes of the hypophysis; some systems of nomenclature consider it part of the neurohypophysis. In humans a defined structure develops during embryogenesis, but only scattered cells are retained when the gland matures[BTO]. subset: uberon_slim subset: vertebrate_core synonym: "intermediate lobe" RELATED [BTO:0001788] synonym: "intermediate lobe of adenohypophysis" EXACT [] synonym: "intermediate lobe of pituitary" EXACT [] synonym: "pars intermedia" EXACT [MA:0000855] synonym: "pars intermedia (glandula pituitaria)" EXACT [FMA:74632, FMA:TA] synonym: "pars intermedia adenohypophyseos" RELATED [BTO:0001788] synonym: "pars intermedia adenohypophysis" EXACT [FMA:74632, FMA:TA] synonym: "pars intermedia lobi anterior hypophyseos" RELATED [BTO:0001788] xref: BTO:0001788 xref: EHDAA:8765 xref: EHDAA2:0001417 xref: EMAPA:17516 xref: FMA:74632 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fb/Gray1181.png/200px-Gray1181.png xref: MA:0000855 xref: OG:0001178 xref: ZFA:0001197 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: adjacent_to UBERON:0002198 ! neurohypophysis relationship: adjacent_to UBERON:0006377 ! remnant of Rathke's pouch relationship: part_of UBERON:0002196 {source="FMA", source="ZFA"} ! adenohypophysis [Term] id: UBERON:0002433 name: pars tuberalis of adenohypophysis alt_id: UBERON:MA_0000856-ZFA_0001196 def: "The pars tuberalis is part of the anterior lobe of the pituitary gland, and wraps the pituitary stalk in a highly vascularized sheath. [WP,unvetted]." [Wikipedia:Pars_tuberalis] subset: uberon_slim subset: vertebrate_core synonym: "pars tuberalis" EXACT [MA:0000856] synonym: "pars tuberalis (glandula pituitaria)" EXACT [FMA:74631, FMA:TA] synonym: "pars tuberalis adenohypophysis" EXACT [FMA:74631, FMA:TA] xref: BTO:0001739 xref: EHDAA:8767 xref: EHDAA2:0001419 xref: EMAPA:17517 xref: FMA:74631 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b9/Pituitary_gland_representation.PNG/200px-Pituitary_gland_representation.PNG xref: MA:0000856 xref: OG:0001114 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0002196 ! adenohypophysis [Term] id: UBERON:0002434 name: pituitary stalk alt_id: UBERON:0003014 alt_id: UBERON:MA_0000858-ZFA_0001199 alt_id: UBERON:NIF_GrossAnatomy_birnlex_912-FMA_74635 def: "The pituitary stalk (also known as the infundibular stalk or simply the infundibulum) is the connection between the hypothalamus and the posterior pituitary. It carries axons from the magnocellular neurosecretory cells of the hypothalamus down to the posterior pituitary where they release their hormones into the blood. This connection is called the hypothalamohypophyseal tract, and is responsible for the release of oxytocin and antidiuretic hormone[WP]." [Wikipedia:Pituitary_stalk] subset: uberon_slim subset: vertebrate_core synonym: "hypophyseal stalk" EXACT [MP:0009463] synonym: "hypophysial stalk" RELATED [ZFA:0001199] synonym: "infundibular stem" BROAD [MP:0009463] synonym: "infundibular stem of neurohypophysis" EXACT [FMA:74635] synonym: "infundibulum" EXACT [ZFA:0001199] synonym: "infundibulum" EXACT [MA:0000858, ZFA:0001199] synonym: "infundibulum (lobus posterior) (glandula pituitaria)" EXACT [FMA:74635, FMA:TA] synonym: "infundibulum hypophysis" EXACT [FMA:74635, FMA:TA] synonym: "infundibulum of hypothalamus" RELATED [ZFA:0001199] synonym: "infundibulum of neurohypophysis" EXACT [FMA:74635] synonym: "infundibulum of pituitary gland" EXACT [FMA:74635] synonym: "infundibulum of posterior lobe of pituitary gland" EXACT [FMA:74635] synonym: "neurohypophysis infundibulum" EXACT [FMA:74635] synonym: "tuberal part of hypophysis" EXACT [FMA:74635] xref: BTO:0000768 xref: EHDAA:7538 xref: EHDAA2:0000828 xref: EMAPA:17520 xref: FMA:74635 xref: MA:0000858 xref: ncithesaurus:Pituitary_Stalk xref: NIF_GrossAnatomy:birnlex_912 xref: OG:0000245 xref: SCTID:245529009 xref: XAO:0004210 xref: ZFA:0001199 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001894 ! diencephalon relationship: part_of UBERON:0002198 ! neurohypophysis [Term] id: UBERON:0002435 name: striatum alt_id: UBERON:MA_0000891-FMA_77618 def: "A region of the forebrain consisting of the caudate nucleus, putamen and fundus striati.[GO]." [GOC:jl, Wikipedia:Striatum] comment: TODO - check striatum vs corpus striatum see http://en.wikipedia.org/wiki/Striatum#History. Check caudoputamen subset: uberon_slim synonym: "corpus striatum" RELATED [MA:0000891] synonym: "neostriatum" EXACT [GO:0021756, Wikipedia:Striatum] synonym: "striate nucleus" EXACT [GO:0021756, Wikipedia:Striatum] xref: ABA:STR xref: BM:N xref: BTO:0000418 xref: EFO:0000109 xref: EMAPA:17549 xref: FMA:77618 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/BrainCaudatePutamen.svg/200px-BrainCaudatePutamen.svg.png xref: MA:0000891 xref: MESH:A.08.186.211.730.885.105.487.550 xref: ncithesaurus:Striatum xref: NIF_GrossAnatomy:birnlex_1672 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0000204 {source="GO"} ! ventral telencephalon relationship: part_of UBERON:0002420 ! basal ganglion relationship: spatially_disjoint_from UBERON:0006514 {source="ABA"} ! pallidum [Term] id: UBERON:0002436 name: primary visual cortex alt_id: UBERON:MA_0000914-FMA_236871 def: "The term area 17 of Brodmann (human) refers to a subdivision of the cytoarchitecturally defined occipital region of cerebral cortex in the human. Defined by the band of Gennari, which gives it the name striate (furrowed) area, it occupies the banks of the calcarine sulcus which are located in the cuneus and the lingual gyrus of the occipital lobe. Cytoarchitecturally it is bounded by the area 18 of Brodmann (human) which surrounds it ( Brodmann-1909 ). In the mouse ( Paxinos-2001 ) and the rat ( Swanson-1998 ) it is located on the dorsolateral surface of the cerebral hemisphere[BrainInfo]." [BrainInfo:2102, Wikipedia:Visual_cortex] subset: uberon_slim synonym: "area 17 of brodmann" RELATED [Wikipedia:Visual_cortex] synonym: "area 17 of brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1748] synonym: "area striata" RELATED [] synonym: "b09-17" EXACT [NIF_GrossAnatomy:birnlex_1748] synonym: "BA17" RELATED [Wikipedia:Visual_cortex] synonym: "brodmann (1909) area 17" EXACT [NIF_GrossAnatomy:birnlex_1748] synonym: "Brodmann area 17" EXACT [Wikipedia:Visual_cortex] synonym: "brodmann area 17" RELATED [Wikipedia:Visual_cortex] synonym: "brodmann area 17, striate" EXACT [NIF_GrossAnatomy:birnlex_1748] synonym: "calcarine cortex" RELATED [BrainInfo:2102] synonym: "occipital visual neocortex" RELATED [GEO:GSM336648] synonym: "striate cortex" EXACT [FMA:236871] synonym: "V1" RELATED [] synonym: "visual association area" RELATED [Wikipedia:Visual_cortex] synonym: "visual association cortex" RELATED [Wikipedia:Visual_cortex] xref: BM:Tel-Cx-V1 xref: BTO:0004703 xref: FMA:236871 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/70/Brodmann_areas_17_18_19.png/200px-Brodmann_areas_17_18_19.png xref: MA:0000914 xref: NIF_GrossAnatomy:birnlex_1748 is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0002021 ! occipital lobe [Term] id: UBERON:0002437 name: cerebral white matter alt_id: UBERON:MA_0000945-FMA_241998 def: "White matter is one of the two main solid components of the central nervous system. It is composed of myelinated nerve cell processes, or axons, which connect various grey matter areas (the locations of nerve cell bodies) of the brain to each other and carry nerve impulses between neurons. Cerebral and spinal white matter do not contain dendrites, which can only be found in grey matter along with neural cell bodies and shorter axons (Christine Fennema-Notestine)." [NIF_GrossAnatomy:birnlex_711] xref: BTO:0000236 xref: FMA:241998 xref: MA:0000945 xref: ncithesaurus:Cerebral_White_Matter xref: NIF_GrossAnatomy:birnlex_711 xref: SCTID:361691006 is_a: UBERON:0002316 ! white matter is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter relationship: part_of UBERON:0001893 ! telencephalon [Term] id: UBERON:0002438 name: ventral tegmental nucleus alt_id: UBERON:MA_0001031-FMA_72435 comment: MA:0001055 anterior tegmental nucleus is a sibling to MA:0001031 ventral tegmental nucleus, but synonyms in FMA. Part of pons in MA, inconsistent with ABA subset: vertebrate_core synonym: "anterior tegmental nuclei" EXACT [] synonym: "anterior tegmental nucleus" EXACT [] synonym: "deep tegmental nucleus of gudden" EXACT [] synonym: "nucleus of gudden" RELATED [MA:0001031] synonym: "nucleus tegmentales anteriores" EXACT [FMA:72435, FMA:TA] synonym: "nucleus tegmentalis anterior" EXACT [FMA:72435, FMA:TA] synonym: "ventral raphe tegmental nucleus" EXACT [] synonym: "ventral tegmental nuclei" EXACT [] synonym: "ventral tegmental nucleus (gudden)" EXACT [] synonym: "ventral tegmental nucleus of gudden" EXACT [] xref: ABA:VTN xref: FMA:72435 xref: MA:0001031 xref: NIF_GrossAnatomy:birnlex_1421 xref: ZFA:0000275 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter is_a: UBERON:0007414 ! implied link automatically realized ! nucleus of midbrain tegmentum relationship: part_of UBERON:0001943 {source="NIF"} ! midbrain tegmentum relationship: spatially_disjoint_from UBERON:0001715 {source="ABA"} ! oculomotor nuclear complex relationship: spatially_disjoint_from UBERON:0001944 {source="ABA"} ! pretectal region relationship: spatially_disjoint_from UBERON:0001947 {source="ABA"} ! red nucleus relationship: spatially_disjoint_from UBERON:0001966 {source="ABA"} ! substantia nigra pars reticulata relationship: spatially_disjoint_from UBERON:0002141 {source="ABA"} ! parvocellular oculomotor nucleus relationship: spatially_disjoint_from UBERON:0002691 {source="ABA"} ! ventral tegmental area relationship: spatially_disjoint_from UBERON:0002696 {source="ABA"} ! cuneiform nucleus relationship: spatially_disjoint_from UBERON:0002722 {source="ABA"} ! trochlear nucleus relationship: spatially_disjoint_from UBERON:0002995 {source="ABA"} ! substantia nigra pars lateralis relationship: spatially_disjoint_from UBERON:0003040 {source="ABA"} ! central gray substance of midbrain [Term] id: UBERON:0002439 name: myenteric nerve plexus alt_id: UBERON:MA_0001148-FMA_63252 def: "Part of the enteric nervous system, Auerbach's plexus (or myenteric plexus) exists between the longitudinal and circular layers of muscularis externa in the gastrointestinal tract and provides motor innervation to both layers and secretomotor innervation to the mucosa, having both parasympathetic and sympathetic input, whereas Meissner's plexus has only parasympathetic fibers. It arises from cells in the Nucleus ala cinerea, the parasympathetic nucleus of origin for the tenth cranial nerve, located in the medulla oblongata. The fibers are carried by both the anterior and posterior vagal nerves. It is found in the muscles of the esophagus, stomach, and intestine. The myenteric plexus is the major nerve supply to the gastrointestinal tract and control GI tract motility[WP]." [Wikipedia:Auerbach's_plexus] comment: check myenteric vs submucosal subset: uberon_slim synonym: "auberbach plexus" EXACT [NIF_GrossAnatomy:nlx_anat_100306] synonym: "auberbach's plexus" EXACT [NIF_GrossAnatomy:nlx_anat_100306] synonym: "auberbachs plexus" EXACT [NIF_GrossAnatomy:nlx_anat_100306] synonym: "Auerbach's plexus" EXACT [FMA:63252] synonym: "Meissner's plexus" RELATED [FMA:63252] synonym: "myenteric plexus" EXACT [] synonym: "plexus myentericus" RELATED [BTO:0002436] synonym: "plexus nervosus submucosus" EXACT [FMA:63252, FMA:TA] synonym: "plexus submucosus" EXACT [FMA:63252, FMA:TA] synonym: "Remak's plexus" EXACT [FMA:63252] synonym: "submucous plexus" RELATED [] xref: BTO:0002436 xref: FMA:63252 xref: GAID:798 xref: MA:0001148 xref: MESH:A.08.800.050.050.500 xref: ncithesaurus:Myenteric_Nerve_Plexus xref: NIF_GrossAnatomy:nlx_anat_100306 xref: SCTID:267716001 is_a: UBERON:0001816 ! autonomic nerve plexus relationship: part_of UBERON:0000429 ! enteric plexus [Term] id: UBERON:0002440 name: inferior cervical ganglion alt_id: UBERON:MA_0001154-FMA_6961 def: "The inferior cervical ganglion is situated between the base of the transverse process of the last cervical vertebra and the neck of the first rib, on the medial side of the costocervical artery. Its form is irregular; it is larger in size than the middle cervical ganglion, and is frequently fused with the first thoracic ganglion. [WP,unvetted]." [Wikipedia:Inferior_cervical_ganglion] subset: uberon_slim synonym: "ganglion cervicale inferioris" RELATED [BTO:0000240] synonym: "stellate ganglion" RELATED [MA:0001154] synonym: "variant cervical ganglion" EXACT [] xref: BTO:0000240 xref: EHDAA:8939 xref: EHDAA2:0000815 xref: EMAPA:18439 xref: FMA:6961 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e1/Gray844.png/200px-Gray844.png xref: MA:0001154 xref: SCTID:279280008 is_a: UBERON:0001991 ! cervical ganglion [Term] id: UBERON:0002441 name: cervicothoracic ganglion alt_id: UBERON:MA_0001157-FMA_6469 def: "The stellate ganglion (or cervicothoracic ganglion) is a sympathetic ganglion formed by the fusion of the inferior cervical ganglion and the first thoracic ganglion. Stellate ganglion is located at the level of C7, anterior to the transverse process of C7, posterior to the neck of the first rib, and just below the subclavian artery. [WP,unvetted]." [Wikipedia:Cervicothoracic_ganglion] subset: uberon_slim synonym: "cervicothoracic sympathetic ganglion" EXACT [] synonym: "ganglion stellatum" EXACT [FMA:6469, FMA:TA] synonym: "stellate ganglion" EXACT [] xref: BTO:0001815 xref: EMAPA:18226 xref: FMA:6469 xref: GAID:711 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7a/Gray845.png/200px-Gray845.png xref: MA:0001157 xref: MESH:A.08.340.315.350.800 xref: SCTID:181101006 is_a: UBERON:0001991 ! cervical ganglion relationship: part_of UBERON:0001991 ! cervical ganglion [Term] id: UBERON:0002442 name: axillary nerve trunk alt_id: UBERON:MA_0001175-FMA_65265 synonym: "circumflex nerve trunk" RELATED [MA:0001175] synonym: "right axillary neural trunk" EXACT [] synonym: "trunk of right axillary nerve" EXACT [FMA:65265] xref: FMA:65265 xref: MA:0001175 is_a: UBERON:0001147 ! trunk of peripheral nerve [Term] id: UBERON:0002443 name: choroidal blood vessel alt_id: UBERON:MA_0001237-FMA_76550 def: "A blood vessel that is part of a choroid [Obol]." [OBOL:automatic] comment: cannot find singular in FMA, using Set class synonym: "blood vessel of choroid" EXACT [OBOL:automatic] synonym: "blood vessel of choroid coat" EXACT [OBOL:automatic] synonym: "blood vessel of choroidea" EXACT [OBOL:automatic] synonym: "blood vessel of posterior uvea" EXACT [OBOL:automatic] synonym: "choroid blood vessel" EXACT [OBOL:automatic] synonym: "choroid blood vessels" EXACT [] synonym: "choroid blood vessels set" EXACT [] synonym: "choroid coat blood vessel" EXACT [OBOL:automatic] synonym: "choroidea blood vessel" EXACT [OBOL:automatic] synonym: "posterior uvea blood vessel" EXACT [OBOL:automatic] synonym: "vasa sanguinea choroideae" EXACT [FMA:76550, FMA:TA] xref: EMAPA:17828 xref: FMA:76550 xref: MA:0001237 is_a: UBERON:0001981 ! blood vessel is_a: UBERON:0003496 ! implied link automatically realized ! head blood vessel is_a: UBERON:0007625 ! implied link automatically realized ! pigment epithelium of eye relationship: part_of UBERON:0001776 intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0001776 ! choroid relationship: part_of UBERON:0001776 ! choroid [Term] id: UBERON:0002444 name: lens fiber alt_id: UBERON:MA_0001304-FMA_76827 def: "The lens fibers form the bulk of the lens. They are long, thin, transparent cells, with diameters typically between 4-7 micrometres and lengths of up to 12 mm long." [Wikipedia:Lens_(anatomy)#Lens_fibers] comment: TODO - check plural vs singular. in FMA lens fiber is a cell - FMA:70950 Lens cell. Other ontologies don't appear to commit one way or another. synonym: "fibrae lentis" EXACT [FMA:76827, FMA:TA] synonym: "lens fibers" EXACT [] synonym: "lens fibers set" EXACT [] synonym: "lens fibres" EXACT [] xref: BTO:0000724 xref: EHDAA:4745 xref: EHDAA:9065 xref: EHDAA2:0000979 xref: EMAPA:17841 xref: FMA:76827 xref: MA:0001304 xref: ncithesaurus:Lens_Fiber xref: OG:0000444 xref: XAO:0004096 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0000965 ! lens [Term] id: UBERON:0002445 name: triquetral alt_id: UBERON:MA_0001347-FMA_23715 def: "The triquetral bone (also called triquetrum bone, pyramidal bone, three-cornered bone, and triangular bone) is located in the wrist on the medial side of the proximal row of the carpus between the lunate and pisiform bones. It is on the ulnar side of the hand, but does not articulate with the ulna. It connects with the pisiform, hamate, and lunate bones. It is the 3rd most commonly fractured carpal bone. The triangular bone may be distinguished by its pyramidal shape, and by an oval isolated facet for articulation with the pisiform bone. It is situated at the upper and ulnar side of the carpus. To facilitate its palpation in an exam, the hand must be radially deviated so that the triquetrium moves out from under the ulnar styloid process. The triquetrum may be difficult to find, since it also lies under the pisiform. The etymology derives from the Latin triquetrus which means 'three-cornered'. In reptiles and amphibians, the bone is instead referred to as the ulnare, since (at least in the most primitive fossils) it articulates with the ulna. [WP,unvetted]." [Wikipedia:Triquetral] comment: AAO: ulnare: One of two element that constitute the basal row of carpals. It articulates with the ulna, radius, radiale, centrale (element Y), and carpal 5(4). This element originates from one condensation center or the fusion of two elements (ulnare and intermedium). Occasionally it may fuse to carpal 5(4), the radiale, or other elements. subset: uberon_slim synonym: "cuneiform bone of hand" EXACT [] synonym: "cuneiform of hand" RELATED [MA:0001347] synonym: "os triquetrum" EXACT [FMA:23715, FMA:TA] synonym: "os ulnare" EXACT [UBERON:cjm] synonym: "triangular" RELATED [MA:0001347] synonym: "triangular bone" EXACT [] synonym: "triquetral bone" EXACT [] synonym: "triquetrum" RELATED [MA:0001347] synonym: "ulnar carpal bone" RELATED [MA:0001347] synonym: "ulnare" EXACT HOMOLOGY [AAO:0000845] xref: AAO:0000845 xref: FMA:23715 xref: galen:Triquetral xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/50/Carpus.png/200px-Carpus.png xref: MA:0001347 xref: ncithesaurus:Triangular_Bone xref: SCTID:181965000 is_a: UBERON:0001480 ! proximal carpal bone relationship: part_of UBERON:0001462 ! wrist [Term] id: UBERON:0002446 name: patella alt_id: UBERON:MA_0001374-FMA_24485 def: "The patella, also known as the knee cap or kneepan, is a thick, circular-triangular bone which articulates with the femur and covers and protects the knee joint. It is the largest sesamoid bone in the human body. It is attached to the tendon of the quadriceps femoris muscle, which contracts to extend/straighten the knee. The vastus intermedialis muscle is attached to the base of patella. The vastus lateralis and vastus medialis are attached to lateral and medial borders of patella respectively. The patella is stabilized by the insertion of vastus medialis and the prominence of the anterior femoral condyles, which prevent lateral dislocation during flexion. The retinacular fibres of the patella also stabilize it during exercise. The primary functional role of the patella is knee extension. The patella increases the leverage that the tendon can exert on the femur by increasing the angle at which it acts. The patella ossifies between the ages 2-6 years. In some people it may be absent congenitally or hypoplastic. In 2% of the population there is a bipartite patella, which is usually asymptomatic. Direct trauma, however, may produce symptoms that mimic those of a fracture. The patella has convergently evolved in placental mammals and birds; marsupials have only rudimentary, non-ossified patellae. In more primitive tetrapods, including living amphibians and reptiles, the muscle tendons from the upper leg are attached directly to the tibia, and the patella is not present. [WP,unvetted]." [Wikipedia:Patella] comment: TODO: CHECK THIS ONE. exact syns in FMA, distinct in MA subset: uberon_slim synonym: "knee bone" EXACT [FMA:24485] xref: FMA:24485 xref: GAID:203 xref: galen:Patella xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9a/Knee_diagram.svg/200px-Knee_diagram.svg.png xref: MA:0000666 xref: MA:0001374 xref: MESH:A.02.835.232.500.624 xref: ncithesaurus:Patella xref: SCTID:182083008 is_a: UBERON:0001479 ! sesamoid bone is_a: UBERON:0003464 ! implied link automatically realized ! hindlimb bone relationship: adjacent_to UBERON:0000981 relationship: part_of UBERON:0001465 intersection_of: UBERON:0001474 ! bone intersection_of: adjacent_to UBERON:0000981 ! femur intersection_of: part_of UBERON:0001465 ! knee [Term] id: UBERON:0002447 name: palatine gland alt_id: UBERON:MA_0001584-FMA_71616 def: "The palatine glands form a continuous layer on its posterior surface and around the uvula. They are primarily mucous secreting glands, as opposed to serous or mixed secreting glands. [WP,unvetted]." [Wikipedia:Palatine_gland] subset: uberon_slim synonym: "palatine glands set" EXACT [] synonym: "palatine salivary gland" EXACT [] synonym: "salivary palatine gland" EXACT [] xref: FMA:59795 xref: MA:0001584 xref: ncithesaurus:Palatine_Salivary_Gland xref: SCTID:13604002 is_a: UBERON:0001830 ! minor salivary gland [Term] id: UBERON:0002448 name: fungiform papilla alt_id: UBERON:MA_0001595-FMA_71448 def: "The fungiform papillae are mushroom shaped e (projections) on the tongue. They are located on the top (dorsal) surface of the tongue, scattered throughout the filiform papilla but mainly at the tip and lateral margins of the tongue. They have taste buds on their superior (upper) surface which can distinguish the five tastes: sweet, sour, bitter, salty, and umami. They have a core of connective tissue. They are innervated by the seventh cranial nerve, more specifically via the submandibular ganglion, chorda tympani, and geniculate ganglion ascending to the solitary nucleus (the sensory component of the Vagus nerve in the brainstem). [WP,unvetted]." [Wikipedia:Fungiform_papilla] subset: uberon_slim synonym: "fungiform papilla of tongue" EXACT [FMA:54821] synonym: "fungiform papillae" EXACT PLURAL [] synonym: "fungiform papillae set" EXACT PLURAL [] xref: EMAPA:18657 xref: FMA:54821 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6e/Gray1014.png/200px-Gray1014.png xref: MA:0001595 xref: ncithesaurus:Fungiform_Papilla xref: NIF_GrossAnatomy:birnlex_4106 xref: SCTID:80673002 is_a: UBERON:0001726 {source="MA"} ! papilla of tongue [Term] id: UBERON:0002450 name: decidua alt_id: UBERON:MA_0001722-MIAA_0000290 def: "Uterine lining (endometrium) during a pregnancy, which forms the maternal part of the placenta. It is formed under the influence of progesterone and forms highly-characteristic cells." [Wikipedia:Decidua] comment: todo - check mp syn subset: uberon_slim synonym: "decidous membrane" EXACT [FMA:85538] synonym: "decidua basalis" RELATED [] synonym: "endometrium" RELATED [] synonym: "maternal decidual layer" RELATED [MP:0004256] synonym: "uterine decidua" RELATED [BTO:0001360] xref: BTO:0001360 xref: EMAPA:29917 xref: FMA:85538 xref: GAID:378 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fa/Gray33.png/200px-Gray33.png xref: MA:0001722 xref: MAT:0000290 xref: MESH:A.05.360.319.679.490.373 xref: MIAA:0000290 xref: ncithesaurus:Decidua xref: SCTID:362842004 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000478 {source="FMA"} ! extraembryonic structure is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0001987 {source="MA"} ! placenta [Term] id: UBERON:0002451 name: uterine gland alt_id: UBERON:MA_0001726-FMA_71647 def: "tube like gland lined by ciliated columnar epithelium[WP]. The mucous secreting gland associated with the epithelium lining the uterus. These glands develop and secrete each menstrual cycle and are thought to provide initial blastocyst nutrition prior to implantation[BTO]" [Wikipedia:Uterine_glands] comment: todo - check FMA subset: organ_slim subset: uberon_slim synonym: "glandulae uterinae" EXACT [FMA:71647, FMA:TA] synonym: "uterine glands" EXACT [] synonym: "uterine glands set" EXACT [] xref: BTO:0003433 xref: BTO:0004518 xref: EMAPA:29919 xref: FMA:71647 xref: FMA:86488 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/28/Gray1169.png/200px-Gray1169.png xref: MA:0001726 xref: ncithesaurus:Uterine_Gland xref: SCTID:361377009 is_a: UBERON:0002530 ! gland is_a: UBERON:0005398 ! implied link automatically realized ! female reproductive gland relationship: has_part UBERON:0007592 {source="Wikipedia"} ! ciliated columnar epithelium relationship: part_of UBERON:0000995 ! uterus [Term] id: UBERON:0002453 name: ethmoid sinus alt_id: UBERON:MA_0001792-FMA_84115 def: "The ethmoid sinus, one of the paranasal sinuses, is the collective name for the ethmoidal air cells. Each ethmoid sinus is an air-space enclosed within the ethmoid bone. The ethmoidal air cells consist of numerous thin-walled cavities situated in the ethmoidal labyrinth and completed by the frontal, maxilla, lacrimal, sphenoidal, and palatine bones. They lie between the upper parts of the nasal cavities and the orbits, and are separated from these cavities by thin bony laminæ. [WP,unvetted]." [Wikipedia:Ethmoid_sinus] subset: uberon_slim synonym: "ethmoidal sinus" EXACT [FMA:84115] xref: FMA:84115 xref: GAID:356 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fb/Nnh_front.svg/200px-Nnh_front.svg.png xref: MA:0001792 xref: MESH:A.04.531.621.267 xref: ncithesaurus:Ethmoid_Sinus xref: SCTID:181206009 is_a: UBERON:0001825 ! paranasal sinus [Term] id: UBERON:0002454 name: dorsal metacarpal artery alt_id: UBERON:MA_0001944-FMA_70800 def: "Aanastomosis of dorsal carpal branch of the radial artery and the dorsal carpal branch of the ulnar artery near the back of the wrist. It is made up of the dorsal carpal branches of both the ulnar and radial arteries. It also anastomoses with the anterior interosseous artery and the posterior interosseous artery. The arch gives off three dorsal metacarpal arteries." [Wikipedia:Dorsal_metacarpal_artery] comment: check FMA, singular. specific subtypes e.g. FMA:22761 first dorsal metacarpal artery subset: uberon_slim synonym: "arteriae metacarpales dorsales" EXACT [FMA:70800, FMA:TA] synonym: "dorsal metacarpal arteries" EXACT [] synonym: "dorsal metacarpal arteries set" EXACT [] xref: FMA:70800 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray529.png/200px-Gray529.png xref: MA:0001944 xref: ncithesaurus:Dorsal_Metacarpal_Artery xref: SCTID:244320002 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0002455 name: common plantar digital arteries alt_id: UBERON:MA_0001966-FMA_70821 def: "." [Wikipedia:Common_plantar_digital_arteries] synonym: "arteriae digitales plantares communes" EXACT [FMA:70821, FMA:TA] synonym: "common plantar digital arteries" EXACT [] synonym: "common plantar digital arteries set" EXACT [FMA:70821] xref: FMA:70821 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3e/Gray555.png/200px-Gray555.png xref: MA:0001966 is_a: UBERON:0006138 ! plantar digital artery relationship: has_part UBERON:0001410 ! common palmar digital artery [Term] id: UBERON:0002456 name: internal thoracic artery alt_id: UBERON:MA_0001984-FMA_3960 def: "In human anatomy, the internal thoracic artery (ITA), previously known as the internal mammary artery (a name still common among surgeons), is an artery that supplies the anterior chest wall and the breasts. It is a paired artery, with one running along each side of the sternum, to continue after its bifurcation as the superior epigastric and musculophrenic arteries. [WP,unvetted]." [Wikipedia:Internal_thoracic_artery] comment: note MA has both mammary and thoracic subset: uberon_slim synonym: "internal mammary artery" EXACT ATTRIBUTION_REQUIRED [MA:0001982] synonym: "internal thoracic mammary artery" EXACT [] xref: EHDAA:8585 xref: EHDAA2:0000880 xref: EMAPA:18617 xref: FMA:3960 xref: MA:0001982 xref: MA:0001984 xref: ncithesaurus:Internal_Mammary_Artery xref: OpenCyc:Mx4rMe0MIao8EduQrwACs5b6Bw xref: SCTID:244239009 is_a: UBERON:0001637 ! artery is_a: UBERON:0003834 ! implied link automatically realized ! thoracic segment blood vessel relationship: branch_of UBERON:0001533 ! subclavian artery relationship: part_of UBERON:0001533 ! subclavian artery [Term] id: UBERON:0002457 name: intersegmental artery alt_id: UBERON:MA_0001985-ZFA_0001061 subset: vertebrate_core xref: EHDAA:4340 xref: EHDAA2:0000882 xref: EMAPA:17616 xref: MA:0001985 xref: OG:0000225 xref: ZFA:0001061 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0002458 name: spinal artery alt_id: UBERON:MA_0002043-ZFA_0000682 def: "." [Wikipedia:Spinal_artery] subset: uberon_slim subset: vertebrate_core synonym: "spinal arteries" RELATED [ZFA:0000682] xref: EHDAA:4355 xref: EHDAA2:0001890 xref: EMAPA:18241 xref: MA:0002043 xref: ncithesaurus:Spinal_Artery xref: SCTID:244228006 xref: ZFA:0000682 is_a: UBERON:0001637 ! artery is_a: UBERON:0004258 ! implied link automatically realized ! back blood vessel relationship: part_of UBERON:0001130 intersection_of: UBERON:0001637 ! artery intersection_of: part_of UBERON:0001130 ! vertebral column [Term] id: UBERON:0002459 name: inferior palpebral vein alt_id: UBERON:MA_0002147-FMA_70847 comment: check FMA, singular. synonym: "inferior palpebral veins" EXACT [] synonym: "inferior palpebral veins set" EXACT [] synonym: "lower palpebral vein" RELATED [MA:0002147] synonym: "venae palpebrales inferiores" EXACT [FMA:70847, FMA:TA] xref: FMA:70847 xref: MA:0002147 xref: ncithesaurus:Inferior_Palpebral_Vein xref: SCTID:422559003 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0002460 name: vesical vein alt_id: UBERON:MA_0002263-FMA_70911 def: "The vesical veins are tributaries of the internal iliac veins. [WP,unvetted]." [Wikipedia:Vesical_vein] comment: check FMA, singular. subset: uberon_slim synonym: "venae vesicales" EXACT [FMA:70911, FMA:TA] synonym: "vesical veins" EXACT [] synonym: "vesical veins set" EXACT [] xref: FMA:70911 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bd/Gray585.png/200px-Gray585.png xref: MA:0002263 xref: SCTID:12683000 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0002461 name: anterior abdominal wall muscle alt_id: UBERON:MA_0002268-FMA_20278 synonym: "muscle of anterior abdominal wall" EXACT [FMA:20278] xref: EHDAA2:0000125 xref: FMA:20278 xref: MA:0002268 xref: ncithesaurus:Anterior_Abdominal_Wall_Muscle is_a: UBERON:0002378 {source="FMA"} ! muscle of abdomen relationship: part_of UBERON:0006635 intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0006635 ! anterior abdominal wall relationship: part_of UBERON:0006635 {source="Obol"} ! anterior abdominal wall [Term] id: UBERON:0002462 name: erector spinae alt_id: UBERON:MA_0002289-FMA_71302 def: "The Erector spinæ is a muscle of the back in humans and other animals. It is also known as sacrospinalis in older texts. A more modern term is extensor spinae, though this is not in widespread use. The name of the muscle is pronounced e-rec-tor speen-aye, or e-rec-tor spinae-ee. It is really not just one muscle, but a bundle of muscles and tendons. It is paired and runs more or less vertically. It extends throughout the lumbar, thoracic and cervical regions, and lies in the groove to the side of the vertebral column. Erector spinae is covered in the lumbar and thoracic regions by the lumbodorsal fascia, and in the cervical region by the nuchal ligament. This large muscular and tendinous mass varies in size and structure at different parts of the vertebral column. In the sacral region it is narrow and pointed, and at its origin chiefly tendinous in structure. In the lumbar region it is larger, and forms a thick fleshy mass which, on being followed upward, is subdivided into three columns; these gradually diminish in size as they ascend to be inserted into the vertebræ and ribs. The erector spinae arises from the anterior surface of a broad and thick tendon, which is attached to the medial crest of the sacrum, to the spinous processes of the lumbar and the eleventh and twelfth thoracic vertebræ, and the supraspinal ligament, to the back part of the inner lip of the iliac crests and to the lateral crests of the sacrum, where it blends with the sacrotuberous and posterior sacroiliac ligaments. Some of its fibers are continuous with the fibers of origin of the Glutæus maximus. The muscular fibers form a large fleshy mass which splits, in the upper lumbar region into three columns, viz. , a lateral, the Iliocostalis, an intermediate, the Longissimus, and a medial, the Spinalis. Each of these consists from below upward, of three parts, as follows: [WP,unvetted]." [Wikipedia:Erector_spinae] subset: uberon_slim synonym: "erector spinae muscle group" EXACT [FMA:71302] synonym: "extensor spinae" EXACT [Wikipedia:Erector_spinae] xref: BTO:0001652 xref: EHDAA:9456 xref: EHDAA2:0000454 xref: EMAPA:18168 xref: FMA:71302 xref: MA:0002289 xref: ncithesaurus:Erector_Spinae xref: OG:0000984 xref: OpenCyc:Mx4rwC7lnJwpEbGdrcN5Y29ycA is_a: UBERON:0001630 ! muscle organ relationship: adjacent_to UBERON:0001130 ! vertebral column [Term] id: UBERON:0002463 name: hamstring muscle alt_id: UBERON:MA_0002312-FMA_81022 def: "In human anatomy, the hamstring refers to one of the three posterior thigh muscles, or to the tendons that make up the borders of the space behind the knee. In modern anatomical contexts, however, they usually refer to the posterior thigh muscles, or the tendons of the semitendinosus, the semimembranosus and the biceps femoris. In quadrupeds, it refers to the single large tendon found behind the knee or comparable area. [WP,unvetted]." [Wikipedia:Hamstring] comment: check FMA, singular. subset: uberon_slim synonym: "hamstring muscles" EXACT [] synonym: "hamstring muscles set" EXACT [] synonym: "hamstrings" EXACT [] xref: BTO:0003179 xref: EHDAA:8295 xref: EHDAA2:0000727 xref: EMAPA:19072 xref: EMAPA:19145 xref: FMA:81022 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bc/Biceps_femoris_muscle_long_head.PNG/200px-Biceps_femoris_muscle_long_head.PNG xref: MA:0002312 xref: ncithesaurus:Hamstring xref: OG:0000844 xref: OpenCyc:Mx4rvVjdtJwpEbGdrcN5Y29ycA is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0002464 name: nerve trunk alt_id: UBERON:MA_0002408-FMA_5913 synonym: "trunk of nerve" EXACT [] xref: BTO:0000927 xref: EHDAA:4675 xref: EMAPA:16986 xref: FMA:5913 xref: MA:0002408 is_a: UBERON:0000063 ! organ segment is_a: UBERON:0004732 ! implied link automatically realized ! segmental subdivision of nervous system relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0002465 name: lymphoid system alt_id: UBERON:0002096 alt_id: UBERON:MA_0002435-FMA_74594 def: "The lymphatic system in vertebrates is a network of conduits that carry a clear fluid called lymph. It also includes the lymphoid tissue through which the lymph travels. Lymphoid tissue is found in many organs, particularly the lymph nodes, and in the lymphoid follicles associated with the digestive system such as the tonsils. The system also includes all the structures dedicated to the circulation and production of lymphocytes, which includes the spleen, thymus, bone marrow and the lymphoid tissue associated with the digestive system (Wikipedia)." [https://sourceforge.net/tracker/?func=detail&aid=3153468&group_id=76834&atid=1205376, Wikipedia:Lymphoid_system] comment: We follow FMA and MA in distinguishing between lymphatic system and lymphoid system, with lymhoid tissue part of the non-lymphatic component, although these terms are often used interchangeably. We assume the ZFA term lymphatic tissue actually corresponds to the broader class (e.g. ZFA lymph node in the ZFA lymphatic system). See tracker for more comments. subset: uberon_slim subset: vertebrate_core synonym: "lymphatic system" NARROW [ZFA:0000385] xref: AAO:0010522 xref: EFO:0000870 xref: EHDAA:8677 xref: EHDAA2:0001043 xref: EMAPA:18248 xref: FMA:74594 xref: GAID:931 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/36/Illu_capillary_microcirculation.jpg/200px-Illu_capillary_microcirculation.jpg xref: MA:0002435 xref: MAT:0000197 xref: MIAA:0000197 xref: ncithesaurus:Lymphatic_System xref: OG:0000842 xref: OpenCyc:Mx4rwQAKT5wpEbGdrcN5Y29ycA xref: SCTID:362589007 xref: XAO:0003199 xref: ZFA:0000385 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0002193 ! hemolymphoid system relationship: part_of UBERON:0002405 ! immune system [Term] id: UBERON:0002466 name: intestine secretion alt_id: UBERON:MA_0002515-FMA_62974 def: "Clear to pale yellow watery secretions from the glands lining the small intestine walls. Secretion is stimulated by the mechanical pressure of partly digested food in the intestine." [Wikipedia:Succus_entericus] subset: uberon_slim synonym: "intestinal secretion" EXACT [FMA:62974] synonym: "succus entericus" EXACT [] xref: BTO:0000644 xref: FMA:62974 xref: GAID:1162 xref: MA:0002515 xref: MESH:A.12.200.390 xref: ncithesaurus:Intestinal_Secretion is_a: UBERON:0000456 ! implied link automatically realized ! secretion relationship: secreted_by UBERON:0000160 intersection_of: UBERON:0000456 ! secretion intersection_of: secreted_by UBERON:0000160 ! intestine [Term] id: UBERON:0002467 name: filiform papilla alt_id: UBERON:MA_0002678-FMA_71447 def: "The filiform papillae are thin, long 'V'-shaped cones that don't contain taste buds but are the most numerous. These papillae are mechanical and not involved in gustation covering most of the dorsum (upper surface). They are small and arranged in lines parallel to the V-shaped row of circumvallate papillae, except at the tip of the tongue where they are aligned transversely. Projecting from their apices are numerous filamentous processes, or secondary papillae. These are of a whitish tint, owing to the thickness and density of the epithelium of which they are composed. This epithelium has undergone a peculiar modification as the cells have become cornified and elongated into dense, imbricated, brush-like processes. They contain also a number of elastic fibers, which render them firmer and more elastic than the papillae of mucous membrane generally. The larger and longer papillae of this group are sometimes termed papillae conicae. Fungiform papillae are found dispersed throughout the filiform papillae. [WP,unvetted]." [Wikipedia:Filiform_papilla] subset: uberon_slim synonym: "filiform papilla of tongue" EXACT [FMA:54820] synonym: "filiform papillae" EXACT [] synonym: "filiform papillae set" EXACT [] xref: EMAPA:18655 xref: EMAPA:18873 xref: FMA:54820 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/31/Gray1016.png/200px-Gray1016.png xref: MA:0002678 xref: ncithesaurus:Filiform_Papilla xref: NIF_GrossAnatomy:birnlex_4104 xref: SCTID:58743008 is_a: UBERON:0001726 ! papilla of tongue [Term] id: UBERON:0002468 name: foliate papilla alt_id: UBERON:MA_0002679-FMA_71450 def: "Taste-buds, the end-organs of the gustatory sense, are scattered over the mucous membrane of the mouth and tongue at irregular intervals. They occur especially in the sides of the vallate papillae. There is a localized area at the side of the base of the tongue, the foliate papillae, in which they are especially abundant. [WP,unvetted]." [Wikipedia:Foliate_papilla] subset: uberon_slim synonym: "foliate papilla of tongue" EXACT [FMA:54823] synonym: "foliate papillae" EXACT [] synonym: "foliate papillae set" EXACT [] xref: FMA:54823 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c0/Gray1021.png/200px-Gray1021.png xref: MA:0002679 xref: ncithesaurus:Foliate_Papilla xref: NIF_GrossAnatomy:birnlex_4105 xref: SCTID:362098003 is_a: UBERON:0001726 ! papilla of tongue [Term] id: UBERON:0002469 name: esophagus mucosa alt_id: UBERON:0003345 alt_id: UBERON:MA_0002680-FMA_62996 def: "A mucosa that is part of a esophagus [Obol]." [OBOL:automatic] synonym: "esophageal mucosa" EXACT [] synonym: "esophagus mucosa" EXACT [FMA:62996] synonym: "esophagus mucosa of organ" EXACT [OBOL:automatic] synonym: "esophagus mucous membrane" EXACT [OBOL:automatic] synonym: "esophagus organ mucosa" EXACT [OBOL:automatic] synonym: "gullet mucosa" EXACT [OBOL:automatic] synonym: "gullet mucosa of organ" EXACT [OBOL:automatic] synonym: "gullet mucous membrane" EXACT [OBOL:automatic] synonym: "gullet organ mucosa" EXACT [OBOL:automatic] synonym: "lamina muscularis mucosae oesophageae" EXACT [FMA:62996, FMA:TA] synonym: "mucosa of esophagus" EXACT [OBOL:automatic] synonym: "mucosa of gullet" EXACT [OBOL:automatic] synonym: "mucosa of oesophagus" EXACT [OBOL:automatic] synonym: "mucosa of organ of esophagus" EXACT [OBOL:automatic] synonym: "mucosa of organ of gullet" EXACT [OBOL:automatic] synonym: "mucosa of organ of oesophagus" EXACT [OBOL:automatic] synonym: "mucous membrane of esophagus" EXACT [] synonym: "mucous membrane of gullet" EXACT [OBOL:automatic] synonym: "mucous membrane of oesophagus" EXACT [FMA:62996] synonym: "muscularis mucosae of oesophagus" RELATED INCONSISTENT [FMA:62996] synonym: "oesophageal mucosa" EXACT [FMA:62996] synonym: "oesophagus mucosa" EXACT [] synonym: "oesophagus mucosa of organ" EXACT [OBOL:automatic] synonym: "oesophagus mucous membrane" EXACT [OBOL:automatic] synonym: "oesophagus organ mucosa" EXACT [OBOL:automatic] synonym: "organ mucosa of esophagus" EXACT [OBOL:automatic] synonym: "organ mucosa of gullet" EXACT [OBOL:automatic] synonym: "organ mucosa of oesophagus" EXACT [OBOL:automatic] synonym: "tunica mucosa oesophageae" EXACT [FMA:62996, FMA:TA] synonym: "tunica mucosa oesophagi" RELATED [BTO:0002859] xref: BTO:0002859 xref: EMAPA:26981 xref: EMAPA:26991 xref: FMA:62996 xref: MA:0002680 xref: ncithesaurus:Esophageal_Mucosa xref: SCTID:362127004 is_a: UBERON:0000064 ! organ part is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000344 ! implied link automatically realized ! mucosa relationship: part_of UBERON:0001043 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001043 ! esophagus relationship: part_of UBERON:0001096 ! wall of esophagus [Term] id: UBERON:0002470 name: autopod alt_id: UBERON:MA_0002714-MIAA_0000091 def: "Terminal segment of free upper limb. The generic name for hand, paw, foot etc" [UBERON:cjm] subset: uberon_slim synonym: "autopodium" EXACT [] synonym: "distal free limb segment" EXACT [FMA:83015] synonym: "distal segment of free limb" EXACT [FMA:83015] synonym: "paw" RELATED [] synonym: "pod" RELATED [] xref: BTO:0004359 xref: EFO:0000877 xref: FMA:83015 xref: MA:0002714 xref: MAT:0000091 xref: MIAA:0000091 xref: ncithesaurus:Paw xref: SCTID:95936004 is_a: UBERON:0002529 ! limb segment relationship: distal_to UBERON:0002471 ! zeugopod [Term] id: UBERON:0002471 name: zeugopod alt_id: UBERON:MA_0002716-MIAA_0000092 def: "The middle part of the limb (e.g. between the elbow and wrist)" [] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "epipodium" EXACT [MA:th] synonym: "middle free limb segment" EXACT [FMA:83016] synonym: "middle limb segment" EXACT [] synonym: "middle part of limb" BROAD [] synonym: "zeugopodium" EXACT [] xref: EFO:0000878 xref: FMA:83016 xref: MA:0002716 xref: MAT:0000092 xref: MIAA:0000092 is_a: UBERON:0002529 ! limb segment relationship: distal_to UBERON:0002472 ! stylopod [Term] id: UBERON:0002472 name: stylopod alt_id: UBERON:MA_0002717-MIAA_0000093 def: "Limb segment that is the proximal part of the limb (e.g. between shoulder and elbow)." [] subset: uberon_slim synonym: "propodium" EXACT [MA:th] synonym: "proximal free limb segment" EXACT [FMA:83014] synonym: "proximal part of limb" BROAD [] synonym: "stylopodium" EXACT [] xref: EFO:0000879 xref: FMA:83014 xref: MA:0002717 xref: MAT:0000093 xref: MIAA:0000093 is_a: UBERON:0002529 ! limb segment relationship: part_of UBERON:0002101 ! limb [Term] id: UBERON:0002473 name: intercerebral commissure alt_id: UBERON:MA_0002721-FMA_67930 def: "Class of unpaired telencephalic white matter structures consisting of fiber pathways which project across the midsagittal plane and which serve to interconnect telencephalic structures lying within the contralateral cerebral hemisphere[FMA]." [FMA:67930] synonym: "brain commissure" NARROW [] synonym: "interhemispheric commissure" RELATED [MA:0002721] xref: FMA:67930 xref: MA:0002721 is_a: UBERON:0001020 ! commissure is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon is_a: UBERON:0005970 ! implied link automatically realized ! brain commissure relationship: part_of UBERON:0001893 ! telencephalon relationship: part_of UBERON:0002437 ! cerebral white matter [Term] id: UBERON:0002474 name: cerebellar peduncular complex alt_id: UBERON:MA_0002742-FMA_77791 def: "A composite structure of the brain stem, which in NeuroNames is subdivided into the superior cerebellar peduncle of pons, the decussation of superior cerebellar peduncle and the superior cerebellar peduncle of midbrain (MM)[NIF]." [NIF_GrossAnatomy:birnlex_970, Wikipedia:Cerebellar_peduncle] comment: todo - this requires work for making consistent with ABA, which strictly separates cerebellum from brainstem. in MA, cerebellar peduncle is part of both brainstem and cerebellar white matter. subset: uberon_slim synonym: "cerebellar peduncles" EXACT [] synonym: "cerebellar peduncles and decussations" EXACT [NIF_GrossAnatomy:birnlex_970] synonym: "cerebellar peduncles set" EXACT [] synonym: "cerebellum peduncles" EXACT [] synonym: "pedunculi cerebellares" EXACT [FMA:77791, FMA:TA] xref: FMA:77791 xref: NIF_GrossAnatomy:birnlex_970 is_a: UBERON:0002317 {source="NIF"} ! white matter of cerebellum [Term] id: UBERON:0002475 name: saphenous nerve alt_id: UBERON:MA_0002761-FMA_45262 def: "The saphenous nerve (long or internal saphenous nerve) is the largest cutaneous branch of the femoral nerve. [WP,unvetted]." [Wikipedia:Saphenous_nerve] subset: uberon_slim xref: FMA:45262 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/de/Gray827.png/200px-Gray827.png xref: MA:0002761 xref: OpenCyc:Mx4rvY0kgpwpEbGdrcN5Y29ycA xref: SCTID:181079005 is_a: UBERON:0002003 ! peripheral nerve is_a: UBERON:0003431 ! implied link automatically realized ! leg nerve relationship: branch_of UBERON:0001267 ! femoral nerve [Term] id: UBERON:0002476 name: lateral globus pallidus alt_id: UBERON:MA_0002767-FMA_61839 def: "The lateral globus pallidus (or external, GPe) receives a strong glutamatergic projection from the subthalamic nucleus. The two form a particular system: a coupled pacemaker. The axons of the external globus pallidum go essentially to the subthalamic nucleus. They go also to other elements of the basal ganglia system, the striatum, the substantia nigra pars reticulata, and the internal globus pallidus, where they release the neurotransmitter GABA. GPe is particular in comparison to the other elements of the set by the fact that it does not work as an output base of the basal ganglia (not sending axons to the thalamus) but as the main regulator of the basal ganglia system. It is sometimes used as a target for deep brain stimulation as a treatment for Parkinson's disease. [WP,unvetted]." [Wikipedia:Lateral_globus_pallidus] subset: uberon_slim synonym: "external globus pallidus" EXACT [] synonym: "external pallidum" EXACT [NIF_GrossAnatomy:birnlex_1610] synonym: "external part of globus pallidus" EXACT [NIF_GrossAnatomy:birnlex_1610] synonym: "globus pallidus external segment" EXACT [FMA:61839, MA:0002767, NIF_GrossAnatomy:birnlex_1610] synonym: "globus pallidus externus" EXACT [] synonym: "globus pallidus lateral segment" RELATED [MA:0002767] synonym: "globus pallidus lateralis" EXACT [BTO:0002247] synonym: "globus pallidus, lateral segment" EXACT [] synonym: "lateral pallidal segment" EXACT [] synonym: "lateral pallidum" EXACT [NIF_GrossAnatomy:birnlex_1610] synonym: "lateral part of globus pallidus" EXACT [] synonym: "lateral segment of globus pallidus" EXACT [NIF_GrossAnatomy:birnlex_1610] synonym: "pallidum I" RELATED [BTO:0002247] synonym: "pallidus II" EXACT [FMA:61839] synonym: "pars lateralis globi pallidi medialis" EXACT [FMA:61839, FMA:TA] xref: ABA:GPe xref: BTO:0002247 xref: FMA:61839 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/Brain_structure.gif/200px-Brain_structure.gif xref: MA:0002767 xref: NIF_GrossAnatomy:birnlex_1610 xref: SCTID:361560008 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001875 ! globus pallidus relationship: spatially_disjoint_from UBERON:0002477 {source="ABA"} ! medial globus pallidus [Term] id: UBERON:0002477 name: medial globus pallidus alt_id: UBERON:MA_0002768-FMA_61840 def: "The medial globus pallidus (or internal, GPi) is one of the output nuclei of the basal ganglia. The GABA-containing neurons send their axons to specific nuclei of the dorsal thalamus (VA and VL), to the centromedian complex and to the pedunculopontine complex. The efferent bundle is constituted first of the ansa and fasciculus lenticularis, then crosses the internal capsule as the Edinger's comb system then arrives at the laterosuperior corner of the subthalamic nucleus and constitutes the Forel's field H2, then H, and suddenly changes its direction to form H1 that goes to the inferior part of the thalamus. The distribution of axonal islands is widespread in the lateral region of the thalamus. The innervation of the central region is done by collaterals. [WP,unvetted]." [Wikipedia:Medial_globus_pallidus] subset: uberon_slim synonym: "entopeduncular nucleus" RELATED [MA:0002768] synonym: "entopeduncular nucleus (monakow)" EXACT [] synonym: "globus pallidus inernal segment" RELATED [MA:0002768] synonym: "globus pallidus internal segment" EXACT [] synonym: "globus pallidus internus" EXACT [] synonym: "globus pallidus medial segment" RELATED [MA:0002768] synonym: "globus pallidus medialis" EXACT [BTO:0002248] synonym: "globus pallidus, medial segment" EXACT [] synonym: "internal globus pallidus" EXACT [] synonym: "internal pallidum" EXACT [NIF_GrossAnatomy:birnlex_1555] synonym: "internal part of globus pallidus" EXACT [NIF_GrossAnatomy:birnlex_1555] synonym: "medial pallidal segment" EXACT [] synonym: "medial part of globus pallidus" EXACT [] synonym: "medial segment of globus pallidus" EXACT [NIF_GrossAnatomy:birnlex_1555] synonym: "mesial pallidum" EXACT [] synonym: "pallidum II" RELATED [BTO:0002248] synonym: "pallidus i" EXACT [] synonym: "pars medialis globi pallidi" EXACT [FMA:61840, FMA:TA] xref: ABA:GPi xref: BTO:0002248 xref: FMA:61840 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/Brain_structure.gif/200px-Brain_structure.gif xref: MA:0002768 xref: NIF_GrossAnatomy:birnlex_1555 xref: SCTID:361562000 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001875 ! globus pallidus relationship: spatially_disjoint_from UBERON:0002476 {source="ABA"} ! lateral globus pallidus [Term] id: UBERON:0002478 name: lesser wing of sphenoid bone alt_id: UBERON:MA_0002773-ZFA_0000253 def: "One of two thin triangular plates, which arise from the upper and anterior parts of the body, and, projecting lateralward, end in sharp points." [Wikipedia:Lesser_wing_of_sphenoid_bone] subset: vertebrate_core synonym: "ala minor (os sphenoidale)" EXACT [FMA:52869] synonym: "ingrassia's process" EXACT [FMA:52869] synonym: "lesser wing of sphenoid" EXACT [FMA:52869] synonym: "lesser wing of sphenoid bone" RELATED [MA:0002773] synonym: "lesser wing of sphenoidal bone" EXACT [FMA:52869] synonym: "orbitosphenoid" EXACT [MA:0002773] xref: AAO:0000345 xref: EMAPA:18719 xref: FMA:52869 xref: MA:0002773 xref: OG:0001153 xref: SCTID:361737003 xref: ZFA:0000253 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0003465 ! implied link automatically realized ! chondrocranium bone relationship: develops_from UBERON:0009638 ! orbitosphenoid center relationship: part_of UBERON:0001677 ! sphenoid bone [Term] id: UBERON:0002479 name: dorsal lateral geniculate nucleus alt_id: UBERON:MA_0002775-FMA_62214 synonym: "dorsal nucleus of lateral geniculate body" RELATED [MA:0002775] synonym: "lateral geniculate complex, dorsal part" EXACT [] synonym: "nucleus dorsalis corporis geniculati lateralis" EXACT [FMA:62214, FMA:TA] synonym: "nucleus geniculatus lateralis pars dorsalis" EXACT [NIF_GrossAnatomy:birnlex_1595] xref: ABA:LGd xref: BM:GLd xref: FMA:62214 xref: MA:0002775 xref: NIF_GrossAnatomy:birnlex_1595 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter is_a: UBERON:0006569 ! implied link automatically realized ! diencephalic nucleus relationship: part_of UBERON:0001926 ! lateral geniculate body relationship: spatially_disjoint_from UBERON:0001927 {source="ABA"} ! medial geniculate body [Term] id: UBERON:0002480 name: ventral lateral geniculate nucleus alt_id: UBERON:MA_0002776-FMA_62215 synonym: "corpus geniculatum externum, nucleus accessorius" EXACT [NIF_GrossAnatomy:birnlex_1597] synonym: "corpus geniculatum laterale, pars oralis" EXACT [NIF_GrossAnatomy:birnlex_1597] synonym: "dorsal_nucleus_of_lateral_geniculate_body" EXACT [NIF_GrossAnatomy:birnlex_1597] synonym: "griseum praegeniculatum" EXACT [NIF_GrossAnatomy:birnlex_1597] synonym: "lateral geniculate complex, ventral part" EXACT [] synonym: "lateral geniculate complex, ventral part (kolliker)" EXACT [NIF_GrossAnatomy:birnlex_1597] synonym: "lateral geniculate nucleus, ventral part" EXACT [NIF_GrossAnatomy:birnlex_1597] synonym: "nucleus corporis geniculati lateralis, pars ventralis" EXACT [NIF_GrossAnatomy:birnlex_1597] synonym: "nucleus praegeniculatus" EXACT [NIF_GrossAnatomy:birnlex_1597] synonym: "nucleus pregeniculatum" EXACT [NIF_GrossAnatomy:birnlex_1597] synonym: "nucleus pregeniculatus" EXACT [FMA:62215, FMA:TA] synonym: "nucleus ventralis corporis geniculati lateralis" EXACT [FMA:62215, FMA:TA] synonym: "praegeniculatum" EXACT [NIF_GrossAnatomy:birnlex_1597] synonym: "pregeniculate nucleus" EXACT [] synonym: "ventral nucleus of lateral geniculate body" RELATED [MA:0002776] synonym: "ventral part of the lateral geniculate complex" EXACT [NIF_GrossAnatomy:birnlex_1597] xref: ABA:LGv xref: BM:LGv xref: FMA:62215 xref: MA:0002776 xref: NIF_GrossAnatomy:birnlex_1597 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter is_a: UBERON:0006569 ! implied link automatically realized ! diencephalic nucleus relationship: part_of UBERON:0001926 ! lateral geniculate body [Term] id: UBERON:0002481 name: bone tissue alt_id: UBERON:MA_0002780-FMA_224804 def: "Skeletal tissue with a collagen-rich extracellular matrix vascularized, mineralized with hydroxyapatite and typically including osteocytes located in lacunae that communicate with one another by cell processes (in canaliculi). Bone is deposited by osteoblasts[VAO]." [VAO:0000047, Wikipedia:Bone_tissue] subset: uberon_slim synonym: "calcium tissue" EXACT [] synonym: "osseous tissue" EXACT [] xref: FMA:224804 xref: galen:BoneTissue xref: MA:0002780 xref: MESH:A.02.835.232 xref: ncithesaurus:Bone_Tissue xref: VAO:0000047 is_a: UBERON:0002384 ! connective tissue is_a: UBERON:0004755 ! skeletal tissue relationship: part_of UBERON:0001474 ! bone [Term] id: UBERON:0002482 name: lamellar bone alt_id: UBERON:MA_0002781-FMA_224806 def: "Bone tissue that has a regular parallel alignment of collagen into sheets (lamellae) and is mechanically strong." [Wikipedia:Bone#Woven_or_lamellar] comment: histological classification, lamellar vs woven. Note that only FMA has woven xref: FMA:224806 xref: galen:LamellarBone xref: MA:0002781 is_a: UBERON:0002481 ! bone tissue [Term] id: UBERON:0002483 name: trabecular bone tissue alt_id: UBERON:MA_0002782-FMA_24019 def: "Cancellous bone, synonymous with trabecular bone or spongy bone, is one of the two types of osseous tissue that form bones. Compared to compact bone, which is the other type of osseous tissue, it has a higher surface area but is less dense, softer, weaker, and less stiff. It typically occupies the interior region of bones. Cancellous bone is highly vascular and frequently contains red bone marrow where hematopoiesis, which is the production of blood cells, occurs. The primary anatomical and functional unit of cancellous bone is the trabecula. Its Latin name is substantia spongiosa or substantia spongiosa ossium. The words cancellous and trabecular refer to the tiny, lattice-shaped that form the tissue. [WP,unvetted]." [Wikipedia:Trabecular_bone] comment: one of the two types of osseous tissue that form bones. Compared to compact bone, which is the other type of osseous tissue, it has a higher surface area but is less dense, softer, weaker, and less stiff. It typically occurs at the ends of long bones, proximal to joints and within the interior of vertebrae. Cancellous bone is highly vascular and frequently contains red bone marrow where hematopoiesis, which is the production of blood cells, occurs. The primary anatomical and functional unit of cancellous bone is the trabecula. subset: uberon_slim synonym: "cancellated bone" RELATED [BTO:0001700] synonym: "cancellous bone" EXACT [FMA:24019, MA:0002782] synonym: "cancellous bone tissue" EXACT [] synonym: "spongy bone" EXACT [] synonym: "spongy bone tissue" EXACT [] synonym: "substantia spongiosa" EXACT [Wikipedia:Trabecular_bone] synonym: "substantia spongiosa ossium" EXACT [Wikipedia:Trabecular_bone] synonym: "substantia trabecularis ossium" RELATED [BTO:0001700] synonym: "trabecular bone" EXACT [] synonym: "trabecular substance" RELATED [BTO:0001700] xref: BTO:0001700 xref: FMA:24019 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/34/Illu_compact_spongy_bone.jpg/200px-Illu_compact_spongy_bone.jpg xref: MA:0002782 is_a: UBERON:0002481 ! bone tissue disjoint_from: UBERON:0001439 ! compact bone relationship: part_of UBERON:0002482 ! lamellar bone [Term] id: UBERON:0002484 name: bone marrow cavity alt_id: UBERON:MA_0002783-FMA_75147 def: "the medullary cavities of the bones." [MP:0000065] synonym: "cavity of cancellous bone" EXACT [] xref: FMA:75147 xref: MA:0002783 is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0001439 ! compact bone [Term] id: UBERON:0002485 name: prostate duct alt_id: UBERON:MA_0002785-FMA_19580 def: "the minute canals that pass the prostatic secretions to the urethra." [MP:0009734] synonym: "duct of prostate" EXACT [] synonym: "duct of prostate gland" EXACT [] synonym: "prostate duct" EXACT [] synonym: "prostate gland duct" EXACT [] synonym: "prostatic duct" EXACT [] xref: FMA:19580 xref: MA:0002785 xref: ncithesaurus:Prostatic_Duct xref: SCTID:362276000 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005904 ! implied link automatically realized ! duct of male reproductive system relationship: part_of UBERON:0002367 intersection_of: UBERON:0000058 ! duct intersection_of: part_of UBERON:0002367 ! prostate gland relationship: develops_from UBERON:0003820 {source="PMID:18977204"} ! prostate bud [Term] id: UBERON:0002486 name: glottis alt_id: UBERON:MA_0002788-FMA_55414 def: "The glottis is defined as the combination of the vocal folds and the space in between the folds. [WP,unvetted]." [Wikipedia:Glottis] subset: uberon_slim xref: AAO:0010610 xref: BTO:0001627 xref: FMA:55414 xref: GAID:343 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/32/Arytenoid_cartilage.png/200px-Arytenoid_cartilage.png xref: MA:0002788 xref: MESH:A.04.329.364 xref: ncithesaurus:Glottis xref: SCTID:264482000 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001737 ! larynx [Term] id: UBERON:0002487 name: tooth cavity alt_id: UBERON:MA_0002792-FMA_55660 def: "." [Wikipedia:Tooth_cavity] subset: uberon_slim synonym: "cavitas dentis" EXACT [] synonym: "cavitas pulparis" EXACT [FMA:55660, FMA:TA] synonym: "cavity of tooth" RELATED [MA:0002792] synonym: "pulp cavity" EXACT [] synonym: "pulp cavity of tooth" EXACT [] synonym: "tooth pulp cavity" RELATED [MA:0002792] xref: FMA:55660 xref: MA:0002792 xref: MESH:A.14.254.900.265 xref: SCTID:362105008 is_a: UBERON:0002558 ! organ cavity relationship: part_of UBERON:0001091 ! calcareous tooth [Term] id: UBERON:0002488 name: helix alt_id: UBERON:MA_0002793-FMA_60992 def: "." [Wikipedia:Helix] subset: uberon_slim synonym: "helical part of pinna" EXACT [] synonym: "helix (auricula)" EXACT [] synonym: "helix of auricle of ear" EXACT [] synonym: "helix of ear" EXACT [] synonym: "helix of pinna" EXACT [] xref: FMA:60992 xref: MA:0002793 xref: ncithesaurus:Helix xref: OpenCyc:Mx4rwRDEk5wpEbGdrcN5Y29ycA xref: SCTID:279607004 is_a: UBERON:0001444 ! subdivision of head relationship: part_of UBERON:0001757 ! pinna [Term] id: UBERON:0002489 name: coronal suture alt_id: UBERON:MA_0002795-FMA_52928 def: "The coronal suture is a dense, fibrous connective tissue joint that separates the frontal and parietal bones of the skull. At birth, the bones of the skull do not meet. [WP,unvetted]." [Wikipedia:Coronal_suture] subset: uberon_slim synonym: "coronal suture of skull" EXACT [] xref: EMAPA:19225 xref: FMA:52928 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ae/Gray188-Coronal_suture.png/200px-Gray188-Coronal_suture.png xref: MA:0002795 xref: OpenCyc:Mx4rv2eGHZwpEbGdrcN5Y29ycA xref: SCTID:244510008 is_a: UBERON:0003685 {source="GO"} ! cranial suture relationship: adjacent_to UBERON:0000209 ! tetrapod frontal bone relationship: adjacent_to UBERON:0000210 ! tetrapod parietal bone relationship: part_of UBERON:0001703 ! neurocranium [Term] id: UBERON:0002490 name: frontal suture alt_id: UBERON:MA_0002796-FMA_52989 def: "The frontal suture is a dense connective tissue structure that divides the two halves of the frontal bone of the skull in infants and children. It usually disappears by the age of six, with the two halves of the frontal bone being fused together. If it does not disappear it may be called a 'metopic suture' or 'sutura frontalis persistens. ' If the suture is not present at birth (craniosynostosis) it will cause a keel-shaped deformity of the skull called 'trigonocephaly. ' It is present in a fetal skull so that the skull can bend and is very elastic at the time of birth. The baby's head literally bends when coming out of the mother's womb. The space is filled as the child grows older. [WP,unvetted]." [Wikipedia:Frontal_suture] subset: uberon_slim synonym: "frontal suture of skull" EXACT [] synonym: "metopic suture" RELATED [MA:0002796] synonym: "sutura frontalis" EXACT [Wikipedia:Frontal_suture] synonym: "sutura metopica" EXACT [FMA:52989, FMA:TA] xref: EMAPA:19226 xref: FMA:52989 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/17/Gray134.png/200px-Gray134.png xref: MA:0002796 xref: SCTID:136854008 is_a: UBERON:0003685 ! cranial suture relationship: adjacent_to UBERON:0000209 ! tetrapod frontal bone [Term] id: UBERON:0002491 name: lambdoid suture alt_id: UBERON:MA_0002797-FMA_52933 def: "The lambdoid suture (or lambdoidal suture) is a dense, fibrous connective tissue joint on the posterior aspect of the skull that connects the parietal and temporal bones with the occipital bone. Its name comes from its lambda-like shape. [WP,unvetted]." [Wikipedia:Lambdoid_suture] subset: uberon_slim synonym: "lambdoid suture of skull" EXACT [] synonym: "lambdoidal suture" RELATED [MA:0002797] xref: EMAPA:19227 xref: FMA:52933 xref: MA:0002797 xref: SCTID:361830007 is_a: UBERON:0003685 {source="GO"} ! cranial suture relationship: part_of UBERON:0001703 ! neurocranium [Term] id: UBERON:0002492 name: sagittal suture alt_id: UBERON:MA_0002798-FMA_52929 def: "The sagittal suture is a dense, fibrous connective tissue joint between the two parietal bones of the skull. At birth, the bones of the skull do not meet. If certain bones of the skull grow too fast then 'premature closure' of the sutures may occur. This can result in skull deformities. If the sagittal suture closes early the skull becomes long, narrow, and wedge-shaped, a condition called 'scaphocephaly. ' Two anatomical landmarks are found on the sagittal suture: the bregma and the vertex of the skull. The bregma is formed by the intersection of the sagittal and coronal sutures, and the vertex is the highest point on the skull and is many times near the midpoint of the sagittal suture. The sagittal suture is also known as the 'interparietal suture' and the 'sutura interparietalis. ' The term is derived from the Latin word Sagitta, meaning 'arrow'. The derivation of this term may be demonstrated by observing how the sagittal suture is notched posteriorly, like an arrow, by the lambdoid suture. [WP,unvetted]." [Wikipedia:Sagittal_suture] subset: uberon_slim synonym: "sagittal suture of skull" EXACT [] xref: EMAPA:19224 xref: FMA:52929 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/24/Kort-lang-skalle.gif/200px-Kort-lang-skalle.gif xref: MA:0002798 xref: SCTID:244511007 is_a: UBERON:0003685 ! cranial suture relationship: part_of UBERON:0001703 ! neurocranium [Term] id: UBERON:0002493 name: uterine artery alt_id: UBERON:MA_0002799-FMA_18829 def: "The uterine artery is an artery in females that supplies blood to the uterus. [WP,unvetted]." [Wikipedia:Uterine_artery] subset: uberon_slim xref: FMA:18829 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ae/Gray1170.png/200px-Gray1170.png xref: MA:0002799 xref: SCTID:244300003 is_a: UBERON:0001637 ! artery is_a: UBERON:0006955 ! implied link automatically realized ! uterine epithelium relationship: part_of UBERON:0000995 intersection_of: UBERON:0001637 ! artery intersection_of: part_of UBERON:0000995 ! uterus [Term] id: UBERON:0002494 name: papillary muscle alt_id: UBERON:MA_0002800-FMA_12154 def: "In anatomy, the papillary muscles of the heart serve to limit the movements of the mitral and tricuspid valves. These muscles contract to tighten the chordae tendineae, which in turn prevent inversion. This occurs in response to pressure gradients. Instead they brace the valves against the high pressure, preventing regurgitation of ventricular blood back into the atrial cavities. [WP,unvetted]." [Wikipedia:Papillary_muscle] subset: uberon_slim synonym: "papillary muscle of ventricle" RELATED [MA:0002800] synonym: "ventricular papillary muscle" RELATED [MA:0002800] xref: EHDAA:8655 xref: EHDAA2:0001398 xref: FMA:12154 xref: GAID:175 xref: galen:PapillaryMuscle xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/87/Papillary_muscles.png/200px-Papillary_muscles.png xref: MA:0002800 xref: MESH:A.02.633.580.680 xref: ncithesaurus:Papillary_Muscle xref: OG:0001392 xref: OpenCyc:Mx4rDid0jLYYEduAAAACs2IKfQ xref: SCTID:279329009 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0002082 ! cardiac ventricle [Term] id: UBERON:0002495 name: long bone alt_id: UBERON:MA_0002802-FMA_7474 def: "those that are longer than they are wide, and grow primarily by elongation of the diaphysis, with an epiphysis at the ends of the growing bone. The ends of epiphyses are covered with a hyaline cartilage ('articular cartilage'). The longitudinal growth of long bones is a result of endochondral ossification at the epiphyseal plate. Bone growth in length is stimulated by the production of growth hormone (GH), a secretion of the anterior lobe of the pituitary gland. The long bones include the femurs, tibias, and fibulas of the legs, the humeri, radii, and ulnas of the arms, metacarpals and metatarsals of the hands and feet, and the phalanges of the fingers and toes. The long bones of the human leg comprise nearly half of adult height. The other primary skeletal component of height is the spine and skull. The outside of the bone consists of a layer of connective tissue called the periosteum. Additionally, the outer shell of the long bone is compact bone, then a deeper layer of cancellous bone (spongy bone) which contains red bone marrow. The interior part of the long bone is the medullary cavity with the inner core of the bone cavity being composed of (in adults) of yellow marrow. There are five general classifications of bones: (1) Long bones, (2) Short bones, (3) Flat bones, (4) Irregular bones, and (5) Sesamoid bones[WP]." [Wikipedia:Long_bone] comment: Endochondral_ossification is an essential process during the rudimentary formation of long bones, with the exception of the clavicle[Wikipedia:Endochondral_ossification]. The medial and and lateral ends undergo EO, the mid-portion is formed by a process with features of EO & IO (the process is shared by the mandible)[ISBN:9780397517251] subset: uberon_slim xref: BTO:0004256 xref: FMA:7474 xref: galen:LongBone xref: MA:0002802 xref: ncithesaurus:Long_Bone xref: OpenCyc:Mx4rv6axr5wpEbGdrcN5Y29ycA xref: SCTID:332709000 is_a: UBERON:0001474 ! bone relationship: part_of UBERON:0002091 ! appendicular skeleton [Term] id: UBERON:0002496 name: stapes base alt_id: UBERON:MA_0002804-FMA_52769 subset: uberon_slim synonym: "base of stapes" RELATED [MA:0002804] synonym: "footplate" RELATED [] synonym: "stapes footplate" RELATED [MA:0002804] xref: EHDAA:5143 xref: EHDAA:6096 xref: FMA:52769 xref: MA:0002804 xref: SCTID:279685009 is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001687 ! stapes [Term] id: UBERON:0002497 name: acromion alt_id: UBERON:MA_0002805-FMA_23260 def: "The acromion process, or simply the acromion, is an anatomical feature on the shoulder blade, together with the coracoid process extending laterally over the shoulder joint. [WP,unvetted]." [Wikipedia:Acromion] subset: uberon_slim xref: AAO:0000826 xref: EMAPA:25119 xref: FMA:23260 xref: GAID:187 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/79/Gray206.png/200px-Gray206.png xref: MA:0002805 xref: MESH:A.02.835.232.087.783.261 xref: ncithesaurus:Acromion xref: OpenCyc:Mx4rvmrF8pwpEbGdrcN5Y29ycA xref: SCTID:181911000 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001124 ! tetrapod scapula [Term] id: UBERON:0002498 name: deltoid tuberosity alt_id: UBERON:MA_0002808-FMA_23418 def: "The deltoid tuberosity is the region on the shaft of the humerus to which the deltoid muscle attaches. [WP,unvetted]." [Wikipedia:Deltoid_tuberosity] subset: uberon_slim synonym: "deltoid tuberosity of humerus" EXACT [FMA:23418] synonym: "tuberositas deltoidea" EXACT [FMA:23418, FMA:TA] synonym: "tuberositas deltoidea (corpus humeri)" EXACT [] xref: EMAPA:25052 xref: FMA:23418 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a7/HumerusFront.png/200px-HumerusFront.png xref: MA:0002808 is_a: UBERON:0004530 ! implied link automatically realized ! bony projection is_a: UBERON:0005813 ! tubercle relationship: part_of UBERON:0004652 ! humerus diaphysis [Term] id: UBERON:0002499 name: cochlear labyrinth alt_id: UBERON:MA_0002809-FMA_61259 def: "For more uses of the word labyrinth, see Labyrinth (disambiguation) The labyrinth is a system of fluid passages in the inner ear, including both the cochlea, which is part of the auditory system, and the vestibular system, which provides the sense of balance. It is named by analogy with the mythical maze that imprisoned the Minotaur, because of its appearance. The bony labyrinth, or osseous labyrinth, is the network of passages with bony walls lined with periosteum. The bony labyrinth is lined with the membranous labyrinth. There is a layer of perilymph between them. The three parts of the bony labyrinth are the vestibule of the ear, the semicircular canals, and the cochlea. The vestibular system is the region of the inner ear where the semicircular canals converge, close to the cochlea (the hearing organ). The vestibular system works with the visual system to keep objects in focus when the head is moving. Joint and muscle receptors also are important in maintaining balance. The brain receives, interprets, and processes the information from these systems that control our balance. [WP,unvetted]." [Wikipedia:Cochlear_labyrinth] comment: WP - The labyrinth can be divided by layer or by region. Bony vs. membranous / Vestibular vs. cochlear subset: uberon_slim xref: BTO:0004686 xref: FMA:61259 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/19/Gray923.png/200px-Gray923.png xref: MA:0002809 xref: ncithesaurus:Cochlear_Labyrinth is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001844 ! cochlea relationship: part_of UBERON:0001849 ! membranous labyrinth [Term] id: UBERON:0002500 name: zygomatic arch alt_id: UBERON:MA_0002810-FMA_53120 def: "The zygomatic arch or cheek bone is formed by the zygomatic process of temporal bone (a bone extending forward from the side of the skull, over the opening of the ear) and the temporal process of the zygomatic bone (the side of the cheekbone), the two being united by an oblique suture; the tendon of the Temporalis passes medial to the arch to gain insertion into the coronoid process of the mandible. The term zygomatic derives from the Latin zyosislymore meaning malar bone or cheekbone. The zygomatic arch is occasionally referred to as the zygoma, but this term usually refers to the zygomatic bone or occasionally the zygomatic process. The zygomatic process of the temporal arises by two roots: an anterior, directed inward in front of the mandibular fossa, where it expands to form the articular tubercle. a posterior, which runs backward above the external acoustic meatus and is continuous with the supramastoid crest. The upper border of the arch gives attachment to the temporal fascia; the lower border and medial surface give origin to the Masseter. The zygomatic arch is significant in evolutionary biology, as it is part of the structures derived from the ancestral single temporal fenestra of the synapsid ancestor of mammals. [WP,unvetted]." [Wikipedia:Zygomatic_arch] subset: uberon_slim synonym: "zygoma" EXACT [] xref: FMA:53120 xref: galen:Zygoma xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Gray188-Sphenozygomatic_suture.png/200px-Gray188-Sphenozygomatic_suture.png xref: MA:0002810 xref: MESH:A.02.835.232.781.324.995 xref: ncithesaurus:Zygomatic_Arch xref: OpenCyc:Mx4rvih1YZwpEbGdrcN5Y29ycA xref: SCTID:272682006 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0002241 ! chondrocranium [Term] id: UBERON:0002501 name: oval window alt_id: UBERON:MA_0002813-FMA_56913 def: "The oval window (or vestibular window) is a membrane-covered opening which leads from the middle ear to the vestibule of the inner ear. Vibrations that come into contact with the tympanic membrane travel through the three ossicles and into the inner ear. The oval window is the intersection of the middle ear with the inner ear, and is directly contacted by the stapes; by the time vibrations reach the oval window, they have been amplified over twenty times from what they were when they contacted the tympanic membrane, a testament to the amplifying power of the middle ear. It is a reniform (kidney-shaped) opening leading from the tympanic cavity into the vestibule of the internal ear; its long diameter is horizontal, and its convex border is upward. In the recent state it is occupied by the base of the stapes, the circumference of which is fixed by the annular ligament to the margin of the foramen. [WP,unvetted]." [Wikipedia:Oval_window] subset: uberon_slim synonym: "oval window of petrous part of temporal bone" EXACT [] synonym: "vestibular window" RELATED [MA:0002813] xref: FMA:56913 xref: GAID:882 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9d/Gray911.png/200px-Gray911.png xref: MA:0002813 xref: MESH:A.09.246.631.909.551 is_a: UBERON:0000161 ! orifice is_a: UBERON:0005744 ! implied link automatically realized ! cranial conduit relationship: part_of UBERON:0001694 ! petrous part of temporal bone [Term] id: UBERON:0002502 name: round window alt_id: UBERON:MA_0002814-FMA_56932 def: "The round window is one of the two openings into the cochlea of the inner ear. It is closed off from the middle ear by the round window membrane, which vibrates with opposite phase to vibrations entering the cochlea through the oval window. It allows fluid in the cochlea to move, which in turn ensures that hair cells of the basilar membrane will be stimulated and that audition will occur. [WP,unvetted]." [Wikipedia:Round_window] subset: uberon_slim synonym: "cochlear window" RELATED [MA:0002814] synonym: "round window of petrous part of temporal bone" EXACT [] xref: FMA:56932 xref: GAID:878 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9d/Gray911.png/200px-Gray911.png xref: MA:0002814 xref: MESH:A.09.246.631.246.814 is_a: UBERON:0000161 ! orifice is_a: UBERON:0005744 ! implied link automatically realized ! cranial conduit relationship: part_of UBERON:0001694 ! petrous part of temporal bone [Term] id: UBERON:0002503 name: greater trochanter alt_id: UBERON:MA_0002822-FMA_32852 def: "The greater trochanter (great trochanter) of the femur is a large, irregular, quadrilateral eminence and a part of the skeletal system. It is directed a little lateralward and backward, and, in the adult, is about 1 cm lower than the head. Because the pelvic outlet in the female is larger than in the male, there is a greater distance between the greater trochanters in the female. It has two surfaces and four borders. [WP,unvetted]." [Wikipedia:Greater_trochanter] subset: uberon_slim synonym: "greater trochanter of femur" EXACT [] xref: FMA:32852 xref: galen:GreaterTrochanter xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/97/Gray243.png/200px-Gray243.png xref: MA:0002822 xref: SCTID:182050001 is_a: UBERON:0000980 ! trochanter relationship: part_of UBERON:0004412 {source="FMA"} ! proximal epiphysis of femur [Term] id: UBERON:0002504 name: lesser trochanter alt_id: UBERON:MA_0002823-FMA_32853 def: "The lesser trochanter (small trochanter) of the femur is a conical eminence, which varies in size in different subjects [WP,unvetted]." [Wikipedia:Lesser_trochanter] subset: uberon_slim synonym: "lesser trochanter of femur" EXACT [] xref: FMA:32853 xref: galen:LesserTrochanter xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Gray341.png/200px-Gray341.png xref: MA:0002823 xref: ncithesaurus:Lesser_Trochanter xref: SCTID:182051002 is_a: UBERON:0000980 ! trochanter relationship: part_of UBERON:0004412 {source="FMA"} ! proximal epiphysis of femur [Term] id: UBERON:0002505 name: spiral modiolar artery alt_id: UBERON:MA_0002824-FMA_52312 def: "the artery which parallels the spiral ganglion in the root of the spiral lamina of the modiolus, serving the ganglion and the cochlear duct and its contents." [MP:0004629] xref: FMA:52312 xref: MA:0002824 xref: SCTID:149380004 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0002506 name: iris epithelium alt_id: UBERON:MA_0002826-FMA_58517 def: "An epithelium that is part of a iris [Obol]." [OBOL:automatic] synonym: "epithelial tissue of iris" EXACT [OBOL:automatic] synonym: "epithelium of iris" EXACT [OBOL:automatic] synonym: "epithelium pigmentosum (iris)" EXACT [] synonym: "epithelium pigmentosum (iris)" EXACT [FMA:58517] synonym: "epithelium pigmentosum iridis" EXACT [FMA:58517, FMA:TA] synonym: "iris epithelial tissue" EXACT [OBOL:automatic] synonym: "iris epithelium" EXACT [FMA:58517] synonym: "iris pigmented epithelium" RELATED [MA:0002826] synonym: "pigmented epithelium of iris" EXACT [] synonym: "pigmented epithelium of iris" EXACT [FMA:58517] xref: FMA:58517 xref: MA:0002826 is_a: UBERON:0000488 {source="FMA"} ! atypical epithelium is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0007625 ! implied link automatically realized ! pigment epithelium of eye relationship: part_of UBERON:0001769 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001769 ! iris relationship: part_of UBERON:0001769 {source="MA"} ! iris [Term] id: UBERON:0002507 name: abdominal lymph node alt_id: UBERON:MA_0002827-FMA_12787 def: "A lymph node that is part of an abdomen [Obol]." [OBOL:automatic] synonym: "abdomen lymph node" EXACT [OBOL:automatic] synonym: "lymph node of abdomen" EXACT [] xref: FMA:12787 xref: MA:0002827 xref: SCTID:245342005 is_a: UBERON:0000029 ! lymph node relationship: part_of UBERON:0000916 intersection_of: UBERON:0000029 ! lymph node intersection_of: part_of UBERON:0000916 ! abdomen [Term] id: UBERON:0002508 name: celiac lymph node alt_id: UBERON:MA_0002828-FMA_12792 def: "The visceral glands are associated with the branches of the celiac, superior and inferior mesenteric arteries. Those related to the branches of the celiac artery (the celiac lymph nodes) form three sets, gastric, hepatic, and pancreaticolienal. gastric lymph nodes hepatic lymph nodes splenic lymph nodes [WP,unvetted]." [Wikipedia:Celiac_lymph_node] subset: uberon_slim synonym: "celiac node" EXACT [] synonym: "coeliac node" EXACT [] synonym: "nodus lymphaticus coeliacus" EXACT [] synonym: "terminal ventral aortic node" EXACT [] xref: FMA:12792 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/71/Gray613.png/200px-Gray613.png xref: MA:0002828 xref: ncithesaurus:Celiac_Lymph_Node xref: SCTID:245343000 is_a: UBERON:0002507 ! abdominal lymph node [Term] id: UBERON:0002509 name: mesenteric lymph node alt_id: UBERON:MA_0002829-FMA_12795 def: "the lymph nodes located in the mesentery, of which there are 3 classes: ileocolic, juxtaintestinal mesenteric, and central superior group." [MP:0005232] synonym: "mesenteric node" EXACT [] synonym: "nodi lymphoidei mesenterici" RELATED [BTO:0000767] xref: BTO:0000767 xref: FMA:12795 xref: MA:0002829 xref: ncithesaurus:Mesenteric_Lymph_Node is_a: UBERON:0002507 ! abdominal lymph node is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0002095 intersection_of: UBERON:0002507 ! abdominal lymph node intersection_of: part_of UBERON:0002095 ! mesentery [Term] id: UBERON:0002510 name: anterior fontanel alt_id: UBERON:MA_0002830-FMA_75439 def: "The anterior fontanelle (bregmatic fontanelle, frontal fontanelle) is the largest, and is placed at the junction of the sagittal suture, coronal suture, and frontal suture; it is lozenge-shaped, and measures about 4 cm in its antero-posterior and 2.5 cm in its transverse diameter. The fontanelle allows the skull to deform during birth to ease its passage through the birth canal and for expansion of the brain after birth. While the posterior and lateral fontanelles are obliterated by about six months after birth, the anterior is not completely closed until about the middle of the second year. Full ossification starts in the late twenties and finishes before the age of 50 . [WP,unvetted]." [Wikipedia:Anterior_fontanelle] synonym: "anterior fontanelle" EXACT [FMA:75439] xref: EMAPA:19199 xref: FMA:75439 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b3/Gray197.png/200px-Gray197.png xref: MA:0002830 is_a: UBERON:0002221 ! fontanelle [Term] id: UBERON:0002511 name: trabecula carnea alt_id: UBERON:MA_0002831-FMA_7269 def: "The trabeculae carneae (columnae carneae, or fleshy beams), are rounded or irregular muscular columns which project from the inner surface of the right and left ventricles of the heart.[1] They should not be confused with the pectinate muscles, which are present in the right[1] and left atria only. They are of three kinds: * some are attached along their entire length on one side and merely form prominent ridges,* others are fixed at their extremities but free in the middle, * while a third set, the papillary muscles are continuous by their bases with the wall of the ventricle, while their apices give origin to the chordæ tendineæ which pass to be attached to the segments of both the mitral valve and the tricuspid valve. The purpose of the trabeculae carneae is most likely to prevent suction that would occur with a flat surfaced membrane and thus impair the heart's ability to pump efficiently. The trabeculae carneae also serve a similar function to papillary muscles in that their contraction pulls on the chordae tendineae, preventing inversion of the mitral (bicuspid) and tricuspid valves, that is, their bulging towards the atrial chambers, which would lead to subsequent leakage of the blood into the atria. So by the action of papillary muscles on the atrioventricular valves, backflow of the blood from the ventricles into the atria is prevented[WP]." [Wikipedia:Trabeculae_carneae] comment: Note that WP states they are ventricular, but MP has classes for atrial ventricular carnea. synonym: "cardiac trabecula" RELATED [GO:0060347] synonym: "heart trabecula" RELATED [GO:0060347] synonym: "trabecula of heart" RELATED [] synonym: "ventricle trabecula carnea" EXACT [MA:0002831] synonym: "ventricular trabecula" RELATED [MA:0002831] xref: EMAPA:18626 xref: FMA:7269 xref: MA:0002831 is_a: UBERON:0000440 ! trabecula is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0000948 ! heart [Term] id: UBERON:0002512 name: corpus luteum alt_id: UBERON:MA_0002834-FMA_18619 def: "The corpus luteum (Latin for 'yellow body') (plural corpora lutea) is a temporary endocrine structure in mammals, involved in production of progestogen, which is needed to maintain the endometrium. [WP,unvetted]." [Wikipedia:Corpus_luteum] subset: uberon_slim synonym: "corpus luteum of ovary" EXACT [] synonym: "luteal gland" RELATED [BTO:0000292] xref: BTO:0000292 xref: EMAPA:29886 xref: FMA:18619 xref: GAID:369 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/57/Folliclesinovary.jpg/200px-Folliclesinovary.jpg xref: MA:0002834 xref: MESH:A.05.360.319.114.630.278 xref: ncithesaurus:Corpus_Luteum xref: SCTID:257943001 is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: develops_from UBERON:0001305 ! ovarian follicle relationship: part_of UBERON:0000949 ! endocrine system relationship: part_of UBERON:0000992 ! female gonad [Term] id: UBERON:0002513 name: endochondral bone alt_id: UBERON:MA_0002836-ZFA_0001591 def: "Replacement bone that forms within cartilage[TAO]. Endochondral ossification is the formation of bone by the replacement of cartilage tissue with mineralized bone[GO]. cartilage is present during endochondral ossification. It is also an essential process during the rudimentary formation of long bones, the growth of the length of long bones, and the natural healing of bone fractures[WP]." [GO:0001958, Wikipedia:Endochondral_bone] comment: note that some structures, e.g. in ZFA are both intramembrane and endochondral subset: uberon_slim subset: vertebrate_core synonym: "cartilaginous bone" RELATED [BTO:0002157] xref: AAO:0010776 xref: AEO:0000083 xref: BTO:0002157 xref: EHDAA2:0003083 xref: VAO:0000145 xref: XAO:0004018 xref: ZFA:0001591 is_a: UBERON:0001474 ! implied link automatically realized ! bone relationship: replaces UBERON:0002418 ! cartilage tissue [Term] id: UBERON:0002514 name: intramembranous bone alt_id: UBERON:MA_0002837-ZFA_0001635 def: "Bone tissue forms directly within mesenchyme, and does not replace other tissues[TAO]. Intramembranous ossification is the formation of bone in which osteoblasts secrete a collagen-proteoglycan matrix that binds calcium salts and becomes calcified[GO]. Intramembranous ossification is the way flat bones and the shell of a turtle are formed[GO]. Unlike endochondral ossification, cartilage is not present during intramembranous ossification[WP]." [GO:0001957, Wikipedia:Intramembranous_ossification] synonym: "membrane bone" RELATED [AEO:0000085] xref: AEO:0000085 xref: EHDAA2:0003085 xref: ZFA:0001635 is_a: UBERON:0001474 ! implied link automatically realized ! bone relationship: develops_from UBERON:0003104 ! mesenchyme [Term] id: UBERON:0002515 name: periosteum alt_id: UBERON:MA_0002838-FMA_24041 def: "Periosteum is a membrane that lines the outer surface of all bones, except at the joints of long bones. Endosteum lines the inner surface of all bones. Periosteum consists of dense irregular connective tissue. Periosteum is divided into an outer 'fibrous layer' and inner 'cambium layer' (or 'osteogenic layer'). The fibrous layer contains fibroblasts, while the cambium layer contains progenitor cells that develop into osteoblasts. These osteoblasts are responsible for increasing the width of a long bone and the overall size of the other bone types. After a bone fracture the progenitor cells develop into osteoblasts and chondroblasts, which are essential to the healing process. As opposed to osseous tissue, periosteum has nociceptors nerve endings, making it very sensitive to manipulation. It also provides nourishment by providing the blood supply. Periosteum is attached to bone by strong collagenous fibers called Sharpey's fibres, which extend to the outer circumferential and interstitial lamellae. It also provides an attachment for muscles and tendons. Periosteum that covers the outer surface of the bones of the skull is known as 'pericranium'. [WP,unvetted]." [Wikipedia:Periosteum] subset: uberon_slim xref: BTO:0001022 xref: FMA:24041 xref: GAID:925 xref: galen:PeriOsteum xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cf/Bone_growth.png/200px-Bone_growth.png xref: MA:0002838 xref: MESH:A.10.165.265.746 xref: ncithesaurus:Periosteum xref: SCTID:33840008 is_a: UBERON:0000158 ! membranous layer is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001474 ! bone [Term] id: UBERON:0002516 name: epiphyseal plate alt_id: UBERON:MA_0002839-FMA_75427 def: "a hyaline cartilage plate in the metaphysis at each end of a long bone. The plate is found in children and adolescents; in adults, who have stopped growing, the plate is replaced by an epiphyseal line." [Wikipedia:Epiphyseal_plate] comment: editor note: consider splitting this class into the epiphyseal plates of long bones and vertebrae subset: uberon_slim synonym: "cartilago epiphysialis" RELATED [BTO:0000412] synonym: "epiphyseal cartilage" RELATED [] synonym: "epiphyseal disk" RELATED [BTO:0000412] synonym: "epiphyseal growth disk" RELATED [BTO:0000412] synonym: "epiphyseal growth plate" EXACT [] synonym: "epiphyseal growth plate cartilage" EXACT [] synonym: "epiphysial plate" EXACT [FMA:75427] synonym: "growth plate" RELATED [MA:0002839] synonym: "long bone epiphyseal plate" EXACT [MA:0002839] synonym: "physis" RELATED [BTO:0000412] xref: BTO:0000412 xref: EMAPA:25059 xref: EMAPA:25062 xref: EMAPA:25065 xref: EMAPA:25068 xref: EMAPA:25071 xref: FMA:75427 xref: GAID:191 xref: MA:0002839 xref: MESH:A.02.835.232.251.352 xref: SCTID:84349008 is_a: UBERON:0001994 ! hyaline cartilage relationship: part_of UBERON:0001438 ! metaphysis [Term] id: UBERON:0002517 name: basicranium alt_id: UBERON:MA_0002840-FMA_52801 def: "The base of skull is the most inferior area of the skull, composed of the endocranium and lower parts of the skull roof." [Wikipedia:Base_of_skull] subset: uberon_slim synonym: "base of skull" EXACT [] synonym: "basis cranii" EXACT [FMA:52801, FMA:TA] synonym: "cranial base" RELATED [MA:0002840] xref: FMA:52801 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Gray193.png/200px-Gray193.png xref: MA:0002840 xref: MESH:A.01.456.830 xref: ncithesaurus:Base_of_the_Skull xref: SCTID:181890004 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001703 ! neurocranium [Term] id: UBERON:0002518 name: otolith organ alt_id: UBERON:MA_0002841-ZFA_0000559 def: "saccule or utricle." [Wikipedia:Otolith_organ] subset: organ_slim subset: uberon_slim subset: vertebrate_core synonym: "otolith organs" RELATED [ZFA:0000559] xref: EFO:0003539 xref: GAID:883 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Bigotolith.jpg/200px-Bigotolith.jpg xref: MA:0002841 xref: ZFA:0000559 is_a: UBERON:0000062 ! organ is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: develops_from UBERON:0003051 ! ear vesicle relationship: part_of UBERON:0001862 ! vestibular labyrinth [Term] id: UBERON:0002519 name: otolithic membrane alt_id: UBERON:MA_0002842-FMA_75573 def: "a gelatinous membrane located in the vestibular apparatus of the inner ear, and plays an essential role in the brain's interpretation of equilibrium. Both the saccular macula and utricular macula are covered by an otolithic membrane. The membrane is composed of crystalline particles of calcium carbonate called otoliths. When the head is moved the otoliths shift, causing cilia in the nearby saccule and utricle to distort. This produces nerve signals which are sent to the brain, which then uses them to establish its sense of balance. The embedded crystals are very and dense and make the density of the otolithic membrane higher than that of the endolymph surrounding it. When the head accelerates along a line or tilts to change its orientation to gravity, the otolithic membrane shifts relative to the bone supporting the maculae. This shift bends the hair cells whose processes are embedded in the otolithic membrane.[WP]." [Wikipedia:Otolithic_membrane] subset: uberon_slim synonym: "membrana statoconiorum" EXACT [FMA:75573, FMA:TA] synonym: "otolith layer of statoconial membrane" EXACT [FMA:75573] xref: FMA:75573 xref: GAID:884 xref: MA:0002842 xref: MESH:A.09.246.631.909.625.125.680 xref: SCTID:362571006 is_a: UBERON:0000476 ! acellular anatomical structure relationship: part_of UBERON:0001862 ! vestibular labyrinth relationship: surrounds UBERON:0000054 ! macula [Term] id: UBERON:0002520 name: submandibular lymph node alt_id: UBERON:MA_0002843-FMA_61224 def: "The submandibular lymph nodes (submaxillary glands in older texts), three to six in number, are placed beneath the body of the mandible in the submaxillary triangle, and rest on the superficial surface of the submaxillary salivary gland. One gland, the middle gland of Stahr, which lies on the external maxillary artery as it turns over the mandible, is the most constant of the series; small lymph glands are sometimes found on the deep surface of the submaxillary salivary glands. The afferents of the submaxillary glands drain the medial palpebral commissure, the cheek, the side of the nose, the upper lip, the lateral part of the lower lip, the gums, and the anterior part of the margin of the tongue. Efferent vessels from the facial and submental glands also enter the submaxillary glands. Their efferent vessels pass to the superior deep cervical glands. [WP,unvetted]." [Wikipedia:Submandibular_lymph_node] subset: uberon_slim synonym: "level ib neck node" EXACT [] synonym: "nodi lymphoidei submandibulares" RELATED [BTO:0000769] synonym: "submandibular node" EXACT [] xref: BTO:0000769 xref: FMA:61224 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4e/Illu_quiz_hn_03.jpg/200px-Illu_quiz_hn_03.jpg xref: MA:0002843 xref: ncithesaurus:Submandibular_Lymph_Node xref: SCTID:245319003 is_a: UBERON:0003968 ! peripheral lymph node [Term] id: UBERON:0002521 name: elastic tissue alt_id: UBERON:MA_0002853-FMA_20113 def: "Elastic fibers (or yellow fibers) are bundles of proteins found in extracellular matrix of connective tissue and produced by fibroblasts and smooth muscle cells in arteries. These fibers can stretch up to 1.5 times their length, and snap back to their original length when relaxed. Elastic fibers include elastin, elaunin and oxytalan. Elastic tissue is classified as 'connective tissue proper'. The elastic fiber is formed from the elastic microfibril and amorphous elastin. The microfibril scaffolds and organizes the deposition of amorphous elastin. Amorphous elastin forms from monomers of soluble tropoelastin which is insolubilized and crosslinked into amorphous elastin by lysyl oxidase. Lysyl oxidase reacts with specific lysine residues and by oxidative deamination generates reactive aldehydes and allysine. These reactive aldehydes and allysines can react with lysine and other allysine residues to crosslink and form desmosine, isodesmosine, and a number of other polyfunctional crosslinks that join surrounding elastin molecules to build an elastin matrix and elastic fiber. These unique crosslinks are responsible for elastin's elasticity. [WP,unvetted]." [Wikipedia:Elastic_tissue] subset: uberon_slim synonym: "elastic connective tissue" EXACT [] synonym: "textus connectivus elasticus" EXACT [] xref: FMA:20113 xref: GAID:926 xref: MA:0002853 xref: MESH:A.10.165.400 xref: SCTID:27197004 is_a: UBERON:0002384 ! connective tissue [Term] id: UBERON:0002522 name: tunica media alt_id: UBERON:MA_0002855-FMA_55590 def: "The tunica media (or just media) (middle coat) is the middle layer of an artery or vein. [WP,unvetted]." [Wikipedia:Tunica_media] comment: todo - check BTO subset: uberon_slim synonym: "tunica media vasorum" RELATED [BTO:0002011] xref: BTO:0002011 xref: FMA:55590 xref: GAID:170 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/32/Illu_artery.jpg/200px-Illu_artery.jpg xref: MA:0002855 xref: MESH:A.02.633.570.491.800 xref: ncithesaurus:Tunica_Media xref: SCTID:61695000 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0000055 ! vessel relationship: surrounded_by UBERON:0005734 ! tunica adventitia [Term] id: UBERON:0002523 name: tunica intima alt_id: UBERON:MA_0002861-FMA_55589 def: "The tunica intima (or just intima) is the innermost layer of an artery or vein. It is made up of one layer of endothelial cells and is supported by an internal elastic lamina. The endothelial cells are in direct contact with the blood flow. The inner coat (tunica intima) can be separated from the middle by a little maceration, or it may be stripped off in small pieces; but, on account of its friability, it cannot be separated as a complete membrane. It is a fine, transparent, colorless structure which is highly elastic, and, after death, is commonly corrugated into longitudinal wrinkles. The inner coat consists of: A layer of pavement endothelium, the cells of which are polygonal, oval, or fusiform, and have very distinct round or oval nuclei. This endothelium is brought into view most distinctly by staining with silver nitrate. A subendothelial layer, consisting of delicate connective tissue with branched cells lying in the interspaces of the tissue; in arteries of less than 2 mm. in diameter the subendothelial layer consists of a single stratum of stellate cells, and the connective tissue is only largely developed in vessels of a considerable size. An elastic or fenestrated layer, which consists of a membrane containing a net-work of elastic fibers, having principally a longitudinal direction, and in which, under the microscope, small elongated apertures or perforations may be seen, giving it a fenestrated appearance. It was therefore called by Henle the fenestrated membrane. This membrane forms the chief thickness of the inner coat, and can be separated into several layers, some of which present the appearance of a network of longitudinal elastic fibers, and others a more membranous character, marked by pale lines having a longitudinal direction. In minute arteries the fenestrated membrane is a very thin layer; but in the larger arteries, and especially in the aorta, it has a very considerable thickness. [WP,unvetted]." [Wikipedia:Tunica_intima] comment: todo - check BTO subset: uberon_slim synonym: "tunica intima vasorum" RELATED [BTO:0002012] xref: BTO:0002012 xref: FMA:55589 xref: GAID:523 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/32/Illu_artery.jpg/200px-Illu_artery.jpg xref: MA:0002861 xref: MESH:A.07.231.330.800 xref: ncithesaurus:Tunica_Intima xref: SCTID:8361002 is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004923 ! organ component layer relationship: part_of UBERON:0001981 ! blood vessel relationship: surrounded_by UBERON:0002522 ! tunica media [Term] id: UBERON:0002524 name: mediastinal lymph node alt_id: UBERON:MA_0002877-FMA_12774 def: "A lymph node that is part of a mediastinum. Each consists of several lymph node groups, especially along the trachea (5 groups), along the esophagus and between the lung and the diaphragm. In the mediastinal lymph nodes arises lymphatic ducts, which draines the lymph to the left subclavian vein (to the venous angle in the confluence of the subclavian and deep jugular veins). The mediastinal lymph nodes along the esophagus are in tight connection with the abdominal lymph nodes along the esophagus and the stomach. That fact facilitates spreading of tumors cells through these lymphatics in cases of cancers of the stomach and particularly of the esophagus. Through the mediastinum, the main lymphatic drainage from the abdominal organs goes via the thoracic duct (ductus thoracicus), which drains majority of the lymph from the abdomen to the above mentioned left venous angle." [Obol:automatic, Wikipedia:Lymph_node#Lymph_nodes_of_the_thorax] synonym: "mediastinal node" EXACT [] xref: EFO:0001670 xref: FMA:12774 xref: MA:0002877 xref: ncithesaurus:Mediastinal_Lymph_Node xref: SCTID:181760002 is_a: UBERON:0000029 ! lymph node is_a: UBERON:0007644 {source="FMA"} ! thoracic lymph node relationship: part_of UBERON:0003728 ! mediastinum [Term] id: UBERON:0002525 name: brachial lymph node alt_id: UBERON:MA_0002878-FMA_44314 def: "the lymph nodes located along the brachial vein that receive drainage from most of the free upper limb and send efferent vessels to the central axillary lymph nodes." [MP:0005231, Wikipedia:Brachial_lymph_nodes] xref: FMA:44314 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/73/Gray607.png/200px-Gray607.png xref: MA:0002878 is_a: UBERON:0000029 ! lymph node [Term] id: UBERON:0002526 name: lumbar lymph node alt_id: UBERON:MA_0002879-FMA_84599 xref: FMA:84599 xref: MA:0002879 xref: SCTID:281412000 is_a: UBERON:0002507 ! abdominal lymph node [Term] id: UBERON:0002527 name: pancreatic lymph node alt_id: UBERON:MA_0002881-FMA_16626 def: "A lymph node that is part of a pancreas [Obol]." [OBOL:automatic] synonym: "lymph node of pancreas" EXACT [OBOL:automatic] synonym: "pancreas lymph node" EXACT [OBOL:automatic] synonym: "pancreatic node" EXACT [] synonym: "pyloric lymph node" RELATED [MA:0002881] xref: FMA:16626 xref: MA:0002881 xref: ncithesaurus:Pancreatic_Lymph_Node xref: SCTID:276170003 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002507 ! abdominal lymph node relationship: part_of UBERON:0001264 intersection_of: UBERON:0000029 ! lymph node intersection_of: part_of UBERON:0001264 ! pancreas [Term] id: UBERON:0002528 name: sacral lymph node alt_id: UBERON:MA_0002883-FMA_16655 synonym: "sacral node" EXACT [] xref: FMA:16655 xref: MA:0002883 xref: ncithesaurus:Sacral_Lymph_Node xref: SCTID:279797001 is_a: UBERON:0000029 ! lymph node [Term] id: UBERON:0002529 name: limb segment alt_id: UBERON:MA_0002889-FMA_9661 def: "A major subdivision of a limb. Examples: autopod, zeugopod, stylopod. Excludes the limb girdles." [UBERON:cjm] comment: note FMA has both limb segment and free limb segment, the former includes the girdles. Note that MA uses the term more generally and includes A,S,Z,S+Z(arm/leg), whereas FMA is just A,S,Z synonym: "free limb segment" EXACT [FMA:241863] synonym: "limb region" EXACT [] synonym: "region of limb" EXACT [] synonym: "segment of limb" EXACT [] synonym: "subdivision of limb" EXACT [] xref: FMA:241863 xref: MA:0002889 is_a: UBERON:0000914 ! implied link automatically realized ! organismal segment is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0002101 intersection_of: UBERON:0000914 ! organismal segment intersection_of: part_of UBERON:0002101 ! limb [Term] id: UBERON:0002530 name: gland alt_id: UBERON:MIAA_0000021 def: "A gland is an organ in an animal's body that synthesizes a substance for release such as hormones or breast milk, often into the bloodstream (endocrine gland) or into cavities inside the body or its outer surface (exocrine gland). A gland is an organ specialised for secretion[GO]." [Wikipedia:Gland] comment: none of the major model vertebrate ontologies have a class called gland. Is this class superfluous? Also GO says secretion by tissue. subset: uberon_slim synonym: "Druese" RELATED [BTO:0000522] synonym: "glandula" RELATED [BTO:0000522] xref: AAO:0000212 xref: AEO:0000096 xref: BTO:0000522 xref: EFO:0000797 xref: EHDAA:2161 xref: EHDAA:2181 xref: EHDAA:2967 xref: EHDAA:4475 xref: EHDAA:6522 xref: EHDAA2:0003096 xref: EMAPA:18425 xref: FMA:86294 xref: galen:Gland xref: HAO:0000375 xref: MAT:0000021 xref: MIAA:0000021 xref: ncithesaurus:Gland xref: OpenCyc:Mx4rwP3vyJwpEbGdrcN5Y29ycA xref: SCTID:134358001 is_a: UBERON:0000062 ! organ relationship: secretes UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0002531 name: fin bud alt_id: UBERON:MIAA_0000062-ZFA_0001383 comment: This class was created automatically from a combination of ontologies xref: EFO:0003468 xref: MAT:0000062 xref: MIAA:0000062 xref: TAO:0001383 xref: ZFA:0001383 is_a: UBERON:0004357 ! limb/fin bud [Term] id: UBERON:0002532 name: epiblast alt_id: UBERON:MIAA_0000067-ZFA_0000018 def: "In amniote animal embryology, the epiblast is a tissue type derived either from the inner cell mass in mammals or the blastodisc in birds and reptiles. It lies above the hypoblast. In mammalian embryogenesis, the columnar cells of the epiblast are adjacent to the trophoblast, while the cuboidal cells of the hypoblast are closer to the blastocoele. The epiblast, whilst referred to as the primary ectoderm, differentiates to form all three layers of the trilaminar germ disc in a process called gastrulation[WP]. The outer of the two layers of the blastoderm that form during gastrulation, corresponding to primitive ectoderm during gastrulation and to the definitive ectoderm after gastrulation[ZFA]" [Wikipedia:Epiblast, ZFIN:curator] comment: MP says - tissue that gives rise to the ectoderm, endoderm and mesoderm of the embryo proper. In HOG, epiblast is part of primitive streak/blastpore, which is inconsistent with the MP definition of primitive streak as a ridge of the epiblast. Note that these terms, epiblast and hypoblast, are also used to describe layers of the avian embryonic blastoderm, but the layers so-named seem to be altogether different in these two kinds of vertebrate embryos(CVS). Consider obsoleting this as a grouping class subset: early_development subset: grouping_class subset: uberon_slim subset: vertebrate_core synonym: "blastocyst" RELATED [] synonym: "ectoblast" RELATED [MP:0003886] synonym: "primitive ectoderm" RELATED [OG:0000243] xref: BTO:0004593 xref: MAT:0000067 xref: MIAA:0000067 xref: OG:0000243 is_a: UBERON:0002050 ! embryonic structure [Term] id: UBERON:0002533 name: tail bud alt_id: UBERON:MIAA_0000070-XAO_0000107-ZFA_0000077 def: "The rapidly proliferating mass of cells at the caudal extremity of the embryo; remnant of the primitive node." [BTO:0001445] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "end bud" RELATED [BTO:0001445] synonym: "tail bud mesenchyme " RELATED [ZFA:0000077] synonym: "tailbud" EXACT [] xref: AAO:0011104 xref: BTO:0001445 xref: EFO:0002748 xref: EHDAA:1595 xref: EHDAA2:0001976 xref: EMAPA:16580 xref: MAT:0000070 xref: MIAA:0000070 xref: OG:0000201 xref: TAO:0000077 xref: XAO:0000107 xref: ZFA:0000077 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0002534 name: pectoral/pelvic fin alt_id: UBERON:MIAA_0000087-XAO_0000002-ZFA_0000108 subset: uberon_slim is_a: UBERON:0004708 ! limb/fin is_a: UBERON:0008897 ! fin [Term] id: UBERON:0002535 name: gill alt_id: UBERON:MIAA_0000134-XAO_0000120-ZFA_0000354 def: "Anatomical surface structure found in many aquatic organisms. It is a respiration organ whose function is the extraction of oxygen from water and the excretion of carbon dioxide. The microscopic structure of a gill is such that it presents a very large surface area to the external environment. Gills usually consist of thin filaments of tissue, branches, or slender tufted processes which have a highly folded surface to increase surface area. A high surface area is crucial to the gas exchange of aquatic organisms as water contains only 1/20 parts dissolved Oxygen compared to air. With the exception of some aquatic insects, the filaments and lamellae (folds) contain blood or coelomic fluid, from which gases are exchanged through the thin walls. Oxygen is carried by the blood to other parts of the body. Carbon dioxide passes from the blood through the thin gill tissue into the water. Gills or gill-like organs, located in different parts of the body, are found in various groups of aquatic animals, including mollusks, crustaceans, insects, fish, and amphibians." [Wikipedia:Gill] comment: this term potentially applicable across multiple metazoa, in the future we may create more specific classes subset: uberon_slim synonym: "branchia" RELATED [BTO:0000518] synonym: "gills" RELATED [] xref: AAO:0010171 xref: BTO:0000518 xref: EFO:0000933 xref: GAID:1218 xref: MAT:0000134 xref: MESH:A.13.421 xref: MIAA:0000134 xref: OG:0001214 xref: OpenCyc:Mx4rvVi9dZwpEbGdrcN5Y29ycA xref: TAO:0000354 xref: XAO:0000120 xref: ZFA:0000354 is_a: UBERON:0003102 ! surface structure is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: develops_from UBERON:0008894 {source="XAO"} ! gill precursor relationship: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0002536 name: arthropod sensillum alt_id: UBERON:MIAA_0000163-WBbt_0006929 def: "Sense organ embedded in the integument and consisting of one or a cluster of sensory neurons and associated sensory structures, support cells and glial cells forming a single organised unit with a largely bona-fide boundary.[FBbt]" [FBbt:00007152, Wikipedia:Sensillum] subset: uberon_slim synonym: "sensillum" EXACT [FBbt:00007152, HAO:0000933] xref: BTO:0001237 xref: EFO:0000939 xref: FBbt:00007152 xref: HAO:0000933 xref: MAT:0000163 xref: MIAA:0000163 xref: TGMA:0000540 is_a: UBERON:0000020 ! sense organ is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0002537 name: hermaphrodite gonad alt_id: UBERON:MIAA_0000165-WBbt_0005178 def: "organ in hermaphrodite animal that produces both ova and sperm." [WB:rynl] subset: organ_slim subset: uberon_slim synonym: "hermaphrodite genitalia" EXACT [GO:0040035] synonym: "ovotestis" RELATED [BTO:0000981] xref: BTO:0000981 xref: EFO:0000971 xref: MAT:0000165 xref: MIAA:0000165 xref: WBbt:0005178 is_a: UBERON:0000991 ! implied link automatically realized ! gonad relationship: part_of UBERON:0007197 intersection_of: UBERON:0000991 ! gonad intersection_of: part_of UBERON:0007197 ! hermaphroditic organism [Term] id: UBERON:0002538 name: hatching gland alt_id: UBERON:MIAA_0000180-XAO_0000034-ZFA_0000026 def: "The cells of the hatching gland contain enzymes responsible for solubilization of the egg chorion, facilitating the hatching process[GO]. A transversely oriented set of cells located deep to the EVL on the pericardial membrane, especially prominent during pharyngula period because of the brightly refractile cytoplasmic granules (containing hatching enzymes) of the principal cells of the gland. Kimmel et al, 1995." [ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "frontal gland" RELATED [] synonym: "hgg" RELATED [] xref: AAO:0011050 xref: BTO:0000558 xref: EFO:0000863 xref: MAT:0000180 xref: MIAA:0000180 xref: OG:0000078 xref: TAO:0000026 xref: XAO:0000034 xref: ZFA:0000026 is_a: UBERON:0002530 {source="GO"} ! gland relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0000924 ! ectoderm [Term] id: UBERON:0002539 name: pharyngeal arch alt_id: UBERON:MIAA_0000242-XAO_0000096-ZFA_0001306 def: "One of a series of bony or cartilaginous arches that develop in the walls of the mouth cavity and pharynx of the embryo. The pharyngeal arches are separated by endodermal outpocketings, the pharyngeal pouches" [NLM:branchial+arch, PMID:16313389, Wikipedia:Pharyngeal_arch] comment: Numbered cranial to caudal. different in mammals. branchial arch = ZFA:0001613 pharyngeal arch 3-7. generally gill arch 1 = pharyngeal arch 3. terminology varies as to whether branchial arch follows gill or pharyngeal numbering subset: uberon_slim subset: vertebrate_core synonym: "branchial arch" NARROW [BTO:0001785, MP:0002884] synonym: "pharyngeal arches" EXACT PLURAL [] synonym: "visceral arch" RELATED [] xref: AAO:0010359 xref: BTO:0001785 xref: EFO:0000959 xref: EHDAA:571 xref: EMAPA:16117 xref: GAID:1292 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Gray41.png/200px-Gray41.png xref: MAT:0000242 xref: MESH:A.16.254.160 xref: MIAA:0000242 xref: ncithesaurus:Pharyngeal_Arch xref: OG:0000155 xref: SCTID:308766004 xref: TAO:0001306 xref: VAO:0000149 xref: XAO:0000096 xref: ZFA:0001306 is_a: UBERON:0000481 ! multi-tissue structure relationship: induced_by UBERON:0007690 {source="PMID:16313389"} ! early pharyngeal endoderm relationship: part_of UBERON:0008814 ! pharyngeal system relationship: part_of UBERON:0008816 {source="PMID:16313389"} ! embryonic head [Term] id: UBERON:0002540 name: lateral line system alt_id: UBERON:MIAA_0000249-XAO_0000095-ZFA_0000034 def: "a line of neuroblasts along the sides of fish and amphibia that detect vibrations and pressure changes." [ISBN:0471209627, ISBN:0815318960, Wikipedia:Lateral_line_system] subset: uberon_slim synonym: "lateral line stitches" RELATED [] synonym: "lateral-line organs" RELATED [] synonym: "ll" RELATED [] xref: AAO:0000269 xref: AAO:0000975 xref: EFO:0000941 xref: MAT:0000249 xref: MIAA:0000249 xref: OG:0001243 xref: TAO:0000034 xref: XAO:0000095 xref: ZFA:0000034 is_a: UBERON:0001032 ! sensory system is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0000010 ! peripheral nervous system [Term] id: UBERON:0002541 name: germ ring alt_id: UBERON:MIAA_0000255-ZFA_0000111 def: "The thickend rim of the blastoderm evident during late blastula and gastrula stages[FishBase]. Embryonic structure which is a uniform thickened annulus at the blastoderm margin, consisting of two layers in addition to the EVL, the epiblast and the hypoblast. The germ ring is formed by the involution of the blastoderm back upon itself[ZFA]" [http://www.fishbase.org/glossary/Glossary.php?q=germ%20ring] comment: todo - check timing of appearance and disappearance - check relationship with primitive streak. he blastopore lips in amphibians appear to have the equivalent function of the germ ring in zebrafish (ES) subset: early_development xref: AAO:0000211 xref: EFO:0003427 xref: MAT:0000255 xref: MIAA:0000255 xref: TAO:0000111 xref: ZFA:0000111 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0004734 ! gastrula [Term] id: UBERON:0002542 name: scale alt_id: UBERON:MIAA_0000257-ZFA_0000277 def: "A small rigid plate that grows out of an animal's skin to provide protection. In lepidopteran (butterfly and moth) species, scales are plates on the surface of the insect wing, and provide coloration. Scales are quite common and have evolved multiple times with varying structure and function." [Wikipedia:Scale_(zoology)] subset: grouping_class synonym: "scales" RELATED [] xref: BTO:0005055 xref: EFO:0000960 xref: HAO:0000907 xref: MAT:0000257 xref: MIAA:0000257 xref: ncithesaurus:Scale xref: OpenCyc:Mx4rvVi9M5wpEbGdrcN5Y29ycA xref: TAO:0000277 xref: VAO:0000048 xref: ZFA:0000277 is_a: UBERON:0003102 ! surface structure [Term] id: UBERON:0002543 name: median fin skeleton alt_id: UBERON:MIAA_0000277-ZFA_0001123 def: "Postcranial axial skeleton that is unpaired and located on the sagittal plane of the organism." [TAO:wd] comment: This class was created automatically from a combination of ontologies synonym: "axial fin skeleton" EXACT [TAO:0001123] synonym: "unpaired fin skeleton" EXACT [ZFA:0001123] xref: EFO:0000950 xref: MAT:0000277 xref: MIAA:0000277 xref: TAO:0001123 xref: ZFA:0001123 is_a: UBERON:0000075 ! subdivision of skeletal system relationship: part_of UBERON:0002090 {source="ZFA-modified"} ! postcranial axial skeleton [Term] id: UBERON:0002544 name: digit alt_id: UBERON:MIAA_0000285-XAO_0003035-XAO_0003036 def: "one of several most distal parts of a limb, such as fingers or toes, present in many vertebrates[WP]." [Wikipedia:Digit_(anatomy)] comment: todo homology ZFA:0001588-pectoral fin distal radial. Note: This term is a GAT in FMA. Note: we elect to place a strict taxon constraint on this class - this is controversial, and may be weakened later on - see [Wikipedia:Digit_(anatomy)#Evolution]. subset: uberon_slim synonym: "limb digit" EXACT [MA:0000690] xref: EFO:0000881 xref: FMA:85518 xref: galen:Digit xref: MA:0000690 xref: MAT:0000285 xref: MIAA:0000285 xref: ncithesaurus:Digit xref: OG:0000944 xref: OpenCyc:Mx4rvzLD_ZwpEbGdrcN5Y29ycA xref: SCTID:361367007 xref: XAO:0003032 is_a: UBERON:0005881 ! limb outgrowth relationship: part_of UBERON:0002470 ! autopod [Term] id: UBERON:0002545 name: body ganglion alt_id: UBERON:MIAA_0000344-WBbt_0005332 synonym: "trunk ganglion" RELATED [] xref: EFO:0000901 xref: MAT:0000344 xref: MIAA:0000344 xref: WBbt:0005332 is_obsolete: true [Term] id: UBERON:0002546 name: cranial placode alt_id: UBERON:MIAA_0000369-XAO_0000305 def: "Ectodermal placode that develops in the head into a part of the sensory nervous system. With a few exceptions (lens, adenohypophyseal), cranial placodes are neurogenic" [http://www.ncbi.nlm.nih.gov/books/NBK53175/, https://github.com/seger/aao/issues/4, UBERON:cjm] comment: Editor note: to avoid confusion, we include neurogenic placode as a subclass. Do not merge. Terminological notes: The term placode or placodes also applies to developing organs such as teeth, mammary glands, hair follicles, feathers and scales. We include a separate parent class for this. Taxon notes: Comparisons of developmental gene expression suggest that the anterior ectoderm in amphioxus may be homologous to the vertebrate olfactory placode, the only vertebrate placode with primary, not secondary, neurons[PMID:11523831]. synonym: "placode" BROAD [Wikipedia:Placode] xref: AAO:0010466 xref: MAT:0000369 xref: MIAA:0000369 xref: XAO:0000305 is_a: UBERON:0005085 {source="cjm"} ! ectodermal placode relationship: part_of UBERON:0000033 ! head [Term] id: UBERON:0002547 name: tadpole alt_id: UBERON:MIAA_0000370-MIAA_0000400-XAO_1000008 def: "A an organism at the larval stage" [UBERON:cjm] subset: uberon_slim synonym: "tadpole stage" RELATED [] xref: BTO:0001347 xref: MAT:0000370 xref: MIAA:0000370 is_a: UBERON:0002548 ! larva relationship: existence_starts_and_ends_during UBERON:0009849 intersection_of: UBERON:0000468 ! multi-cellular organism intersection_of: existence_starts_and_ends_during UBERON:0009849 ! tadpole stage [Term] id: UBERON:0002548 name: larva alt_id: UBERON:MIAA_0000400-FBbt_00001727 def: "a distinct juvenile form many animals undergo before metamorphosis into adults. Animals with indirect development such as insects, amphibians, or cnidarians typically have a larval phase of their life cycle." [Wikipedia:Larva] comment: This class was created automatically from a combination of ontologies. TODO: discriminate between stages and organisms subset: uberon_slim synonym: "ammocoete" NARROW [Wikipedia:Larva] synonym: "bipinnaria" NARROW [Wikipedia:Larva] synonym: "caterpillar" NARROW [Wikipedia:Larva] synonym: "glochidium" NARROW [Wikipedia:Larva] synonym: "grub" NARROW [Wikipedia:Larva] synonym: "leptocephalus" NARROW [Wikipedia:Larva] synonym: "maggot" NARROW [Wikipedia:Larva] synonym: "naiad" NARROW [Wikipedia:Larva] synonym: "naupilus" NARROW [Wikipedia:Larva] synonym: "nymph" NARROW [Wikipedia:Larva] synonym: "planula" NARROW [Wikipedia:Larva] synonym: "tadpole" NARROW [Wikipedia:Larva] synonym: "trochophore" NARROW [Wikipedia:Larva] synonym: "veliger" NARROW [Wikipedia:Larva] synonym: "wriggler" NARROW [Wikipedia:Larva] synonym: "zoea" NARROW [Wikipedia:Larva] xref: AEO:0000126 xref: BTO:0000707 xref: FBbt:00001727 xref: HAO:0000459 xref: MIAA:0000400 xref: OpenCyc:Mx4rwQCBvZwpEbGdrcN5Y29ycA is_a: UBERON:0000468 ! implied link automatically realized ! multi-cellular organism relationship: existence_starts_and_ends_during UBERON:0000069 intersection_of: UBERON:0000468 ! multi-cellular organism intersection_of: existence_starts_and_ends_during UBERON:0000069 ! larval stage [Term] id: UBERON:0002549 name: ventral trigeminal tract alt_id: UBERON:NIF_GrossAnatomy_birnlex_1001-FMA_72506 def: "The ventral trigeminothalamic tract serves as pain, temperature, and light touch pathway from the face, head and neck. It receives input from trigeminal nerve, facial nerve, glossopharyngeal nerve and vagus nerve. It receives discriminative tactile and pressure input from the contralateral principal sensory nucleus of CN V, which terminates in the ventral posteromedial nucleus of the thalamus. It then ascends to the contralateral sensory cortex via three neurons . [WP,unvetted]." [Wikipedia:Ventral_trigeminal_tract] subset: uberon_slim synonym: "anterior trigeminothalamic tract" EXACT [FMA:72506] synonym: "tractus trigeminothalamicus anterior" EXACT [FMA:72506, FMA:TA] synonym: "trigeminal lemniscus-2" EXACT [FMA:72506] synonym: "ventral crossed tract" EXACT [FMA:72506] synonym: "ventral secondary ascending tract of v" EXACT [] synonym: "ventral trigeminal pathway" EXACT [FMA:72506] synonym: "ventral trigeminothalamic tract" EXACT [FMA:72506] xref: FMA:72506 xref: NIF_GrossAnatomy:birnlex_1001 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0002550 name: anterior hypothalamic region alt_id: UBERON:NIF_GrossAnatomy_birnlex_1005-FMA_62027 synonym: "chiasmal zone" EXACT [FMA:62027] xref: FMA:62027 xref: NIF_GrossAnatomy:birnlex_1005 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001898 ! hypothalamus [Term] id: UBERON:0002551 name: interstitial nucleus of cajal alt_id: UBERON:NIF_GrossAnatomy_birnlex_1008-FMA_72432 synonym: "interstitial nucleus" EXACT [FMA:72432] synonym: "interstitial nucleus of medial longitudinal fasciculus" EXACT [FMA:72432] synonym: "interstitial nucleus of medial longitudinal fasciculus (crosby)" EXACT [] synonym: "nucleus interstitialis" EXACT [FMA:72432, FMA:TA] xref: ABA:INC xref: BM:MB-ICA xref: FMA:72432 xref: NIF_GrossAnatomy:birnlex_1008 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter is_a: UBERON:0007414 ! implied link automatically realized ! nucleus of midbrain tegmentum relationship: part_of UBERON:0001943 ! midbrain tegmentum relationship: spatially_disjoint_from UBERON:0002044 {source="ABA"} ! ventral nucleus of posterior commissure [Term] id: UBERON:0002552 name: vestibulocerebellar tract alt_id: UBERON:NIF_GrossAnatomy_birnlex_1009-FMA_72508 def: "The vestibulocerebellar tract is a tract in the pontine tegmentum which connects the vestibular nerve and the cerebellar cortex. [WP,unvetted]." [Wikipedia:Vestibulocerebellar_tract] subset: uberon_slim synonym: "vestibulocerebellar fibers" EXACT [FMA:72508] xref: FMA:72508 xref: NIF_GrossAnatomy:birnlex_1009 is_a: UBERON:0002316 ! white matter is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter relationship: part_of UBERON:0003023 ! pontine tegmentum [Term] id: UBERON:0002553 name: anatomical cavity alt_id: UBERON:NIF_GrossAnatomy_birnlex_1011-FMA_67552 def: "Anatomical space which contains portions of one or more body substances and is bounded by the internal surface of one maximally connected anatomical structure. Examples: cranial cavity, pharyngeal recess space, nasal cavity, tooth socket, cavity of serous sac, lumen of stomach, lumen of artery, fornix of vagina." [FMA:67552] synonym: "cavity" EXACT [] xref: EHDAA:2329 xref: EHDAA:2337 xref: EHDAA:2347 xref: EHDAA:293 xref: EHDAA:4741 xref: EHDAA:48 xref: EHDAA:638 xref: EHDAA:644 xref: EMAPA:16054 xref: FMA:67552 xref: galen:Cavity xref: ncithesaurus:Lumen xref: NIF_GrossAnatomy:birnlex_1011 is_a: UBERON:0000464 ! anatomical space relationship: location_of UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0002554 name: regional part of superior colliculus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1014-FMA_85592 subset: inherited_grouping_class xref: FMA:85592 xref: NIF_GrossAnatomy:birnlex_1014 is_a: UBERON:0002966 ! regional part of midbrain tectum relationship: part_of UBERON:0001945 intersection_of: UBERON:0002616 ! regional part of brain intersection_of: part_of UBERON:0001945 ! superior colliculus [Term] id: UBERON:0002555 name: intermediate hypothalamic region alt_id: UBERON:NIF_GrossAnatomy_birnlex_1015-FMA_62028 synonym: "area hypothalamica intermedia" EXACT [FMA:62028, FMA:TA] synonym: "intermediate hypothalamic area" EXACT [FMA:62028] xref: FMA:62028 xref: NIF_GrossAnatomy:birnlex_1015 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: has_part UBERON:0001932 ! arcuate nucleus of hypothalamus relationship: has_part UBERON:0001933 ! retrochiasmatic area relationship: has_part UBERON:0001934 ! dorsomedial nucleus of hypothalamus relationship: has_part UBERON:0001935 ! ventromedial nucleus of hypothalamus relationship: part_of UBERON:0001898 ! hypothalamus [Term] id: UBERON:0002556 name: corticotectal tract alt_id: UBERON:NIF_GrossAnatomy_birnlex_1016-FMA_72419 synonym: "corticotectal fibers" EXACT [FMA:72419] synonym: "corticotectal fibres" EXACT [FMA:72419] synonym: "fibrae corticotectales" EXACT [FMA:72419, FMA:TA] xref: BM:CTT xref: FMA:72419 xref: NIF_GrossAnatomy:birnlex_1016 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0002557 name: linear nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1018-FMA_72436 xref: FMA:72436 xref: NIF_GrossAnatomy:birnlex_1018 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter is_a: UBERON:0007414 ! implied link automatically realized ! nucleus of midbrain tegmentum relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0002558 name: organ cavity alt_id: UBERON:NIF_GrossAnatomy_birnlex_1019-FMA_12237 synonym: "cavity of organ" EXACT [FMA:12237] xref: FMA:12237 xref: NIF_GrossAnatomy:birnlex_1019 xref: SCTID:362606005 is_a: UBERON:0002553 ! anatomical cavity [Term] id: UBERON:0002559 name: medullary reticular formation alt_id: UBERON:NIF_GrossAnatomy_birnlex_1020-FMA_72241 def: "The reticular formation is a series of brain nuclei located in the medulla oblongata" [GO:0021723] comment: note that ZFA:0000421 is part of the the medulla oblongata, so it is placed here, rather than with the generic term subset: vertebrate_core synonym: "bulb reticular formation" EXACT [OBOL:automatic] synonym: "bulbar reticular formation" EXACT [FMA:72241] synonym: "medulla oblongata reticular formation" EXACT [OBOL:automatic] synonym: "medulla oblonmgata reticular formation" EXACT [OBOL:automatic] synonym: "medullary reticular nucleus" EXACT [MA:0001049] synonym: "metepencephalon reticular formation" EXACT [OBOL:automatic] synonym: "reticular formation" BROAD [ZFA:0000421] synonym: "reticular formation of bulb" EXACT [OBOL:automatic] synonym: "reticular formation of medulla" EXACT [FMA:72241] synonym: "reticular formation of medulla oblongata" EXACT [OBOL:automatic] synonym: "reticular formation of medulla oblonmgata" EXACT [OBOL:automatic] synonym: "reticular formation of metepencephalon" EXACT [OBOL:automatic] synonym: "rhombencephalic reticular formation" EXACT [GO:0021723] xref: ABA:MDRN xref: BM:Me-MeRF xref: FMA:72241 xref: GAID:588 xref: MA:0001049 xref: NIF_GrossAnatomy:birnlex_1020 xref: SCTID:369059009 xref: TAO:0000421 xref: ZFA:0000421 is_a: UBERON:0002275 {source="FMA"} ! reticular formation relationship: part_of UBERON:0001896 intersection_of: UBERON:0002275 ! reticular formation intersection_of: part_of UBERON:0001896 ! medulla oblongata relationship: part_of UBERON:0001896 {source="FMA"} ! medulla oblongata relationship: spatially_disjoint_from UBERON:0001719 {source="ABA"} ! nucleus ambiguus relationship: spatially_disjoint_from UBERON:0002127 {source="ABA"} ! inferior olivary complex relationship: spatially_disjoint_from UBERON:0002155 {source="ABA"} ! gigantocellular nucleus relationship: spatially_disjoint_from UBERON:0002673 {source="ABA"} ! vestibular nuclear complex relationship: spatially_disjoint_from UBERON:0002870 {source="ABA"} ! dorsal motor nucleus of vagus nerve relationship: spatially_disjoint_from UBERON:0002871 {source="ABA"} ! hypoglossal nucleus relationship: spatially_disjoint_from UBERON:0002872 {source="ABA"} ! inferior salivatory nucleus relationship: spatially_disjoint_from UBERON:0002877 {source="ABA"} ! parasolitary nucleus [Term] id: UBERON:0002560 name: temporal operculum alt_id: UBERON:NIF_GrossAnatomy_birnlex_1025-FMA_74891 synonym: "facies supratemporalis" EXACT [FMA:74891] xref: FMA:74891 xref: NIF_GrossAnatomy:birnlex_1025 xref: SCTID:369222001 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0002561 name: neuraxis cavity alt_id: UBERON:NIF_GrossAnatomy_birnlex_1029-FMA_75007 synonym: "cavity of neuraxis" EXACT [FMA:75007] synonym: "cavity of ventricular system of neuraxis" EXACT [FMA:75007] synonym: "neuraxis cavity" EXACT [FMA:75007] xref: FMA:75007 xref: NIF_GrossAnatomy:birnlex_1029 is_a: UBERON:0002558 ! organ cavity relationship: part_of UBERON:0001017 ! central nervous system [Term] id: UBERON:0002562 name: superior frontal sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1030-FMA_83755 def: "The superior frontal sulcus is a sulcus between the superior frontal gyrus and the middle frontal gyrus. [WP,unvetted]." [Wikipedia:Superior_frontal_sulcus] subset: uberon_slim synonym: "sulcus f1" EXACT [FMA:83755] synonym: "sulcus frontalis primus" EXACT [NIF_GrossAnatomy:birnlex_1030] synonym: "sulcus frontalis superior" EXACT [NIF_GrossAnatomy:birnlex_1030] synonym: "superior frontal fissure" EXACT [FMA:83755] xref: FMA:83755 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2f/Gray726_Superior_frontal_sulcus.svg/200px-Gray726_Superior_frontal_sulcus.svg.png xref: ncithesaurus:Superior_Frontal_Sulcus xref: NIF_GrossAnatomy:birnlex_1030 xref: SCTID:279342009 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002563 name: central nucleus of inferior colliculus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1035-FMA_72413 synonym: "chief nucleus of inferior colliculus" EXACT [FMA:72413] synonym: "inferior colliculus, central nucleus" EXACT [FMA:72413] synonym: "nucleus of inferior colliculus (crosby)" EXACT [] xref: ABA:ICc xref: BM:MB-Tec-ICC xref: FMA:72413 xref: NIF_GrossAnatomy:birnlex_1035 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002917 ! implied link automatically realized ! regional part of inferior colliculus is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter is_a: UBERON:0009661 ! implied link automatically realized ! midbrain nucleus relationship: part_of UBERON:0001946 ! inferior colliculus relationship: spatially_disjoint_from UBERON:0002571 {source="ABA"} ! external nucleus of inferior colliculus [Term] id: UBERON:0002564 name: lateral orbital gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1036-FMA_62418 xref: FMA:62418 xref: NIF_GrossAnatomy:birnlex_1036 xref: SCTID:279195001 is_a: UBERON:0007193 ! orbital gyrus [Term] id: UBERON:0002565 name: olivary pretectal nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1037-FMA_72405 def: "The pretectum, also known as the pretectal area, is a region of neurons found between the thalamus and midbrain. It receives binocular sensory input from retinal ganglion cells of the eyes, and is the region responsible for maintaining the pupillary light reflex. [WP,unvetted]." [Wikipedia:Olivary_pretectal_nucleus] subset: uberon_slim synonym: "anterior pretectal nucleus" EXACT [FMA:72405] synonym: "nucleus pretectalis anterior" EXACT [FMA:72405, FMA:TA] synonym: "olivary nucleus of superior colliculus" EXACT [FMA:72405] synonym: "pretectal olivary nucleus" EXACT [FMA:72405] xref: ABA:OP xref: BM:MB-Tec-OPT xref: FMA:72405 xref: NIF_GrossAnatomy:birnlex_1037 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003047 ! implied link automatically realized ! regional part of pretectal region is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter is_a: UBERON:0009661 ! implied link automatically realized ! midbrain nucleus relationship: part_of UBERON:0001944 ! pretectal region relationship: spatially_disjoint_from UBERON:0002711 {source="ABA"} ! nucleus of posterior commissure relationship: spatially_disjoint_from UBERON:0002996 {source="ABA"} ! nucleus of optic tract relationship: spatially_disjoint_from UBERON:0006848 {source="ABA"} ! posterior pretectal nucleus [Term] id: UBERON:0002566 name: superior precentral sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1038-FMA_83763 synonym: "precentral dimple" EXACT [FMA:83763] synonym: "sulcus praecentralis superior" EXACT [NIF_GrossAnatomy:birnlex_1038] synonym: "sulcus precentralis superior" EXACT [NIF_GrossAnatomy:birnlex_1038] synonym: "superior part of precentral fissure" EXACT [FMA:83763] xref: FMA:83763 xref: NIF_GrossAnatomy:birnlex_1038 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002567 name: basal part of pons alt_id: UBERON:NIF_GrossAnatomy_birnlex_1043-FMA_72244 synonym: "basal portion of pons" EXACT [FMA:72244] synonym: "base of pons" EXACT [FMA:72244] synonym: "basilar part of pons" EXACT [FMA:72244] synonym: "pars basilaris pontis" EXACT [FMA:72244, FMA:TA] synonym: "pons proper" EXACT [FMA:72244] synonym: "ventral portion of pons" EXACT [FMA:72244] xref: FMA:72244 xref: NIF_GrossAnatomy:birnlex_1043 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: has_part UBERON:0002152 ! middle cerebellar peduncle relationship: part_of UBERON:0000988 ! pons [Term] id: UBERON:0002568 name: amiculum of dentate nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1044-FMA_72546 synonym: "dentate nuclear amiculum" EXACT [FMA:72546] xref: FMA:72546 xref: NIF_GrossAnatomy:birnlex_1044 is_a: UBERON:0002316 ! white matter is_a: UBERON:0002946 ! implied link automatically realized ! regional part of cerebellum is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter relationship: part_of UBERON:0002132 ! dentate nucleus [Term] id: UBERON:0002569 name: transverse temporal sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1045-FMA_83782 xref: FMA:83782 xref: NIF_GrossAnatomy:birnlex_1045 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002570 name: medial orbital gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1046-FMA_62419 xref: FMA:62419 xref: NIF_GrossAnatomy:birnlex_1046 xref: SCTID:279194002 is_a: UBERON:0007193 ! orbital gyrus [Term] id: UBERON:0002571 name: external nucleus of inferior colliculus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1047-FMA_72412 xref: ABA:ICe xref: BM:MB-Tec-ICX xref: FMA:72412 xref: NIF_GrossAnatomy:birnlex_1047 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002917 ! implied link automatically realized ! regional part of inferior colliculus is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter is_a: UBERON:0009661 ! implied link automatically realized ! midbrain nucleus relationship: part_of UBERON:0001946 ! inferior colliculus relationship: spatially_disjoint_from UBERON:0002563 {source="ABA"} ! central nucleus of inferior colliculus [Term] id: UBERON:0002572 name: principal pretectal nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1048-FMA_72402 xref: FMA:72402 xref: NIF_GrossAnatomy:birnlex_1048 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003047 ! implied link automatically realized ! regional part of pretectal region is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter is_a: UBERON:0009661 ! implied link automatically realized ! midbrain nucleus relationship: part_of UBERON:0001944 ! pretectal region [Term] id: UBERON:0002573 name: pontine reticular formation alt_id: UBERON:NIF_GrossAnatomy_birnlex_1050-FMA_68876 def: "The reticular formation is a part of the brain that is involved in actions such as awaking/sleeping cycle, and filtering incoming stimuli to discriminate irrelevant background stimuli. It is essential for governing some of the basic functions of higher organisms, and is one of the phylogenetically oldest portions of the brain. [WP,unvetted]." [Wikipedia:Pontine_reticular_formation] subset: uberon_slim synonym: "pons of varolius reticular formation" EXACT [OBOL:automatic] synonym: "pons reticular formation" EXACT [OBOL:automatic] synonym: "pontine reticular nucleus" EXACT [ABA:PRNr] synonym: "reticular formation of pons" EXACT [FMA:68876] synonym: "reticular formation of pons of varolius" EXACT [OBOL:automatic] xref: ABA:PRNr xref: BM:Pons-PRF xref: FMA:68876 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9b/Gray701.png/200px-Gray701.png xref: NIF_GrossAnatomy:birnlex_1050 xref: SCTID:362403007 is_a: UBERON:0002275 {source="FMA"} ! reticular formation relationship: part_of UBERON:0000988 intersection_of: UBERON:0002275 ! reticular formation intersection_of: part_of UBERON:0000988 ! pons relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum [Term] id: UBERON:0002574 name: regional part of inferior olivary complex alt_id: UBERON:NIF_GrossAnatomy_birnlex_1052-FMA_71259 def: "A regional part of brain that is part of a inferior olivary complex [Obol]." [OBOL:automatic] synonym: "anatomical structure of brain of inferior olivary complex" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of inferior olivary nuclear complex" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of inferior olivary nucleus" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of inferior olive" EXACT [OBOL:automatic] synonym: "biological structure of brain of inferior olivary complex" EXACT [OBOL:automatic] synonym: "biological structure of brain of inferior olivary nuclear complex" EXACT [OBOL:automatic] synonym: "biological structure of brain of inferior olivary nucleus" EXACT [OBOL:automatic] synonym: "biological structure of brain of inferior olive" EXACT [OBOL:automatic] synonym: "brain anatomical structure of inferior olivary complex" EXACT [OBOL:automatic] synonym: "brain anatomical structure of inferior olivary nuclear complex" EXACT [OBOL:automatic] synonym: "brain anatomical structure of inferior olivary nucleus" EXACT [OBOL:automatic] synonym: "brain anatomical structure of inferior olive" EXACT [OBOL:automatic] synonym: "brain biological structure of inferior olivary complex" EXACT [OBOL:automatic] synonym: "brain biological structure of inferior olivary nuclear complex" EXACT [OBOL:automatic] synonym: "brain biological structure of inferior olivary nucleus" EXACT [OBOL:automatic] synonym: "brain biological structure of inferior olive" EXACT [OBOL:automatic] synonym: "inferior olivary complex anatomical structure of brain" EXACT [OBOL:automatic] synonym: "inferior olivary complex biological structure of brain" EXACT [OBOL:automatic] synonym: "inferior olivary complex brain anatomical structure" EXACT [OBOL:automatic] synonym: "inferior olivary complex brain biological structure" EXACT [OBOL:automatic] synonym: "inferior olivary complex neuraxis segment" EXACT [OBOL:automatic] synonym: "inferior olivary complex regional part of brain" EXACT [OBOL:automatic] synonym: "inferior olivary complex segment" EXACT [FMA:71259] synonym: "inferior olivary complex segment of brain" EXACT [OBOL:automatic] synonym: "inferior olivary nuclear complex anatomical structure of brain" EXACT [OBOL:automatic] synonym: "inferior olivary nuclear complex biological structure of brain" EXACT [OBOL:automatic] synonym: "inferior olivary nuclear complex brain anatomical structure" EXACT [OBOL:automatic] synonym: "inferior olivary nuclear complex brain biological structure" EXACT [OBOL:automatic] synonym: "inferior olivary nuclear complex neuraxis segment" EXACT [OBOL:automatic] synonym: "inferior olivary nuclear complex regional part of brain" EXACT [OBOL:automatic] synonym: "inferior olivary nuclear complex segment of brain" EXACT [OBOL:automatic] synonym: "inferior olivary nucleus anatomical structure of brain" EXACT [OBOL:automatic] synonym: "inferior olivary nucleus biological structure of brain" EXACT [OBOL:automatic] synonym: "inferior olivary nucleus brain anatomical structure" EXACT [OBOL:automatic] synonym: "inferior olivary nucleus brain biological structure" EXACT [OBOL:automatic] synonym: "inferior olivary nucleus neuraxis segment" EXACT [OBOL:automatic] synonym: "inferior olivary nucleus regional part of brain" EXACT [OBOL:automatic] synonym: "inferior olivary nucleus segment of brain" EXACT [OBOL:automatic] synonym: "inferior olive anatomical structure of brain" EXACT [OBOL:automatic] synonym: "inferior olive biological structure of brain" EXACT [OBOL:automatic] synonym: "inferior olive brain anatomical structure" EXACT [OBOL:automatic] synonym: "inferior olive brain biological structure" EXACT [OBOL:automatic] synonym: "inferior olive neuraxis segment" EXACT [OBOL:automatic] synonym: "inferior olive regional part of brain" EXACT [OBOL:automatic] synonym: "inferior olive segment of brain" EXACT [OBOL:automatic] synonym: "neuraxis segment of inferior olivary complex" EXACT [OBOL:automatic] synonym: "neuraxis segment of inferior olivary nuclear complex" EXACT [OBOL:automatic] synonym: "neuraxis segment of inferior olivary nucleus" EXACT [OBOL:automatic] synonym: "neuraxis segment of inferior olive" EXACT [OBOL:automatic] synonym: "regional part of brain of inferior olivary complex" EXACT [OBOL:automatic] synonym: "regional part of brain of inferior olivary nuclear complex" EXACT [OBOL:automatic] synonym: "regional part of brain of inferior olivary nucleus" EXACT [OBOL:automatic] synonym: "regional part of brain of inferior olive" EXACT [OBOL:automatic] synonym: "segment of brain of inferior olivary complex" EXACT [OBOL:automatic] synonym: "segment of brain of inferior olivary nuclear complex" EXACT [OBOL:automatic] synonym: "segment of brain of inferior olivary nucleus" EXACT [OBOL:automatic] synonym: "segment of brain of inferior olive" EXACT [OBOL:automatic] synonym: "segment of inferior olivary complex" EXACT [NIF_GrossAnatomy:birnlex_1052] xref: FMA:71259 xref: NIF_GrossAnatomy:birnlex_1052 is_a: UBERON:0002678 ! regional part of medulla oblongata relationship: part_of UBERON:0002127 intersection_of: UBERON:0002616 ! regional part of brain intersection_of: part_of UBERON:0002127 ! inferior olivary complex [Term] id: UBERON:0002575 name: posterior orbital gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1054-FMA_80184 xref: FMA:80184 xref: NIF_GrossAnatomy:birnlex_1054 xref: SCTID:279197009 is_a: UBERON:0007193 ! orbital gyrus [Term] id: UBERON:0002576 name: temporal pole alt_id: UBERON:NIF_GrossAnatomy_birnlex_1055-FMA_74890 def: "The anterior end of the hemisphere is named the frontal pole. The posterior end is named the occipital pole. The anterior end of the temporal lobe, the temporal pole. [WP,unvetted]." [Wikipedia:Temporal_pole] subset: uberon_slim synonym: "polus temporalis" EXACT [NeuroNames:126] xref: FMA:74890 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e3/Human_brain_lateral_view_description.JPG/200px-Human_brain_lateral_view_description.JPG xref: NIF_GrossAnatomy:birnlex_1055 xref: SCTID:314155002 is_a: UBERON:0009899 ! implied link automatically realized ! pole of cerebral hemisphere relationship: part_of UBERON:0001871 intersection_of: UBERON:0009899 ! pole of cerebral hemisphere intersection_of: part_of UBERON:0001871 ! temporal lobe [Term] id: UBERON:0002577 name: pericentral nucleus of inferior colliculus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1056-FMA_72411 synonym: "cortex of inferior colliculus" EXACT [FMA:72411] xref: BM:MB-Tec-ICP xref: FMA:72411 xref: NIF_GrossAnatomy:birnlex_1056 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002917 ! implied link automatically realized ! regional part of inferior colliculus is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter is_a: UBERON:0009661 ! implied link automatically realized ! midbrain nucleus relationship: part_of UBERON:0001946 ! inferior colliculus [Term] id: UBERON:0002578 name: sublentiform nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1057-FMA_72404 xref: FMA:72404 xref: NIF_GrossAnatomy:birnlex_1057 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003047 ! implied link automatically realized ! regional part of pretectal region is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter is_a: UBERON:0009661 ! implied link automatically realized ! midbrain nucleus relationship: part_of UBERON:0001944 ! pretectal region [Term] id: UBERON:0002579 name: regional part of medullary reticular formation alt_id: UBERON:NIF_GrossAnatomy_birnlex_1060-FMA_73730 def: "A regional part of brain that is part of a medullary reticular formation [Obol]." [OBOL:automatic] synonym: "anatomical structure of brain of bulb reticular formation" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of bulbar reticular formation" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of medulla oblongata reticular formation" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of medulla oblonmgata reticular formation" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of medullary reticular formation" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of medullary reticular nucleus" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of metepencephalon reticular formation" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of reticular formation of bulb" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of reticular formation of medulla" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of reticular formation of medulla oblongata" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of reticular formation of medulla oblonmgata" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of reticular formation of metepencephalon" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of rhombencephalic reticular formation" EXACT [OBOL:automatic] synonym: "biological structure of brain of bulb reticular formation" EXACT [OBOL:automatic] synonym: "biological structure of brain of bulbar reticular formation" EXACT [OBOL:automatic] synonym: "biological structure of brain of medulla oblongata reticular formation" EXACT [OBOL:automatic] synonym: "biological structure of brain of medulla oblonmgata reticular formation" EXACT [OBOL:automatic] synonym: "biological structure of brain of medullary reticular formation" EXACT [OBOL:automatic] synonym: "biological structure of brain of medullary reticular nucleus" EXACT [OBOL:automatic] synonym: "biological structure of brain of metepencephalon reticular formation" EXACT [OBOL:automatic] synonym: "biological structure of brain of reticular formation of bulb" EXACT [OBOL:automatic] synonym: "biological structure of brain of reticular formation of medulla" EXACT [OBOL:automatic] synonym: "biological structure of brain of reticular formation of medulla oblongata" EXACT [OBOL:automatic] synonym: "biological structure of brain of reticular formation of medulla oblonmgata" EXACT [OBOL:automatic] synonym: "biological structure of brain of reticular formation of metepencephalon" EXACT [OBOL:automatic] synonym: "biological structure of brain of rhombencephalic reticular formation" EXACT [OBOL:automatic] synonym: "brain anatomical structure of bulb reticular formation" EXACT [OBOL:automatic] synonym: "brain anatomical structure of bulbar reticular formation" EXACT [OBOL:automatic] synonym: "brain anatomical structure of medulla oblongata reticular formation" EXACT [OBOL:automatic] synonym: "brain anatomical structure of medulla oblonmgata reticular formation" EXACT [OBOL:automatic] synonym: "brain anatomical structure of medullary reticular formation" EXACT [OBOL:automatic] synonym: "brain anatomical structure of medullary reticular nucleus" EXACT [OBOL:automatic] synonym: "brain anatomical structure of metepencephalon reticular formation" EXACT [OBOL:automatic] synonym: "brain anatomical structure of reticular formation of bulb" EXACT [OBOL:automatic] synonym: "brain anatomical structure of reticular formation of medulla" EXACT [OBOL:automatic] synonym: "brain anatomical structure of reticular formation of medulla oblongata" EXACT [OBOL:automatic] synonym: "brain anatomical structure of reticular formation of medulla oblonmgata" EXACT [OBOL:automatic] synonym: "brain anatomical structure of reticular formation of metepencephalon" EXACT [OBOL:automatic] synonym: "brain anatomical structure of rhombencephalic reticular formation" EXACT [OBOL:automatic] synonym: "brain biological structure of bulb reticular formation" EXACT [OBOL:automatic] synonym: "brain biological structure of bulbar reticular formation" EXACT [OBOL:automatic] synonym: "brain biological structure of medulla oblongata reticular formation" EXACT [OBOL:automatic] synonym: "brain biological structure of medulla oblonmgata reticular formation" EXACT [OBOL:automatic] synonym: "brain biological structure of medullary reticular formation" EXACT [OBOL:automatic] synonym: "brain biological structure of medullary reticular nucleus" EXACT [OBOL:automatic] synonym: "brain biological structure of metepencephalon reticular formation" EXACT [OBOL:automatic] synonym: "brain biological structure of reticular formation of bulb" EXACT [OBOL:automatic] synonym: "brain biological structure of reticular formation of medulla" EXACT [OBOL:automatic] synonym: "brain biological structure of reticular formation of medulla oblongata" EXACT [OBOL:automatic] synonym: "brain biological structure of reticular formation of medulla oblonmgata" EXACT [OBOL:automatic] synonym: "brain biological structure of reticular formation of metepencephalon" EXACT [OBOL:automatic] synonym: "brain biological structure of rhombencephalic reticular formation" EXACT [OBOL:automatic] synonym: "bulb reticular formation anatomical structure of brain" EXACT [OBOL:automatic] synonym: "bulb reticular formation biological structure of brain" EXACT [OBOL:automatic] synonym: "bulb reticular formation brain anatomical structure" EXACT [OBOL:automatic] synonym: "bulb reticular formation brain biological structure" EXACT [OBOL:automatic] synonym: "bulb reticular formation neuraxis segment" EXACT [OBOL:automatic] synonym: "bulb reticular formation regional part of brain" EXACT [OBOL:automatic] synonym: "bulb reticular formation segment of brain" EXACT [OBOL:automatic] synonym: "bulbar reticular formation anatomical structure of brain" EXACT [OBOL:automatic] synonym: "bulbar reticular formation biological structure of brain" EXACT [OBOL:automatic] synonym: "bulbar reticular formation brain anatomical structure" EXACT [OBOL:automatic] synonym: "bulbar reticular formation brain biological structure" EXACT [OBOL:automatic] synonym: "bulbar reticular formation neuraxis segment" EXACT [OBOL:automatic] synonym: "bulbar reticular formation regional part of brain" EXACT [OBOL:automatic] synonym: "bulbar reticular formation segment of brain" EXACT [OBOL:automatic] synonym: "medulla oblongata reticular formation anatomical structure of brain" EXACT [OBOL:automatic] synonym: "medulla oblongata reticular formation biological structure of brain" EXACT [OBOL:automatic] synonym: "medulla oblongata reticular formation brain anatomical structure" EXACT [OBOL:automatic] synonym: "medulla oblongata reticular formation brain biological structure" EXACT [OBOL:automatic] synonym: "medulla oblongata reticular formation neuraxis segment" EXACT [OBOL:automatic] synonym: "medulla oblongata reticular formation regional part of brain" EXACT [OBOL:automatic] synonym: "medulla oblongata reticular formation segment of brain" EXACT [OBOL:automatic] synonym: "medulla oblonmgata reticular formation anatomical structure of brain" EXACT [OBOL:automatic] synonym: "medulla oblonmgata reticular formation biological structure of brain" EXACT [OBOL:automatic] synonym: "medulla oblonmgata reticular formation brain anatomical structure" EXACT [OBOL:automatic] synonym: "medulla oblonmgata reticular formation brain biological structure" EXACT [OBOL:automatic] synonym: "medulla oblonmgata reticular formation neuraxis segment" EXACT [OBOL:automatic] synonym: "medulla oblonmgata reticular formation regional part of brain" EXACT [OBOL:automatic] synonym: "medulla oblonmgata reticular formation segment of brain" EXACT [OBOL:automatic] synonym: "medullary reticular formation anatomical structure of brain" EXACT [OBOL:automatic] synonym: "medullary reticular formation biological structure of brain" EXACT [OBOL:automatic] synonym: "medullary reticular formation brain anatomical structure" EXACT [OBOL:automatic] synonym: "medullary reticular formation brain biological structure" EXACT [OBOL:automatic] synonym: "medullary reticular formation neuraxis segment" EXACT [OBOL:automatic] synonym: "medullary reticular formation regional part of brain" EXACT [OBOL:automatic] synonym: "medullary reticular formation segment" EXACT [FMA:73730] synonym: "medullary reticular formation segment of brain" EXACT [OBOL:automatic] synonym: "medullary reticular nucleus anatomical structure of brain" EXACT [OBOL:automatic] synonym: "medullary reticular nucleus biological structure of brain" EXACT [OBOL:automatic] synonym: "medullary reticular nucleus brain anatomical structure" EXACT [OBOL:automatic] synonym: "medullary reticular nucleus brain biological structure" EXACT [OBOL:automatic] synonym: "medullary reticular nucleus neuraxis segment" EXACT [OBOL:automatic] synonym: "medullary reticular nucleus regional part of brain" EXACT [OBOL:automatic] synonym: "medullary reticular nucleus segment of brain" EXACT [OBOL:automatic] synonym: "metepencephalon reticular formation anatomical structure of brain" EXACT [OBOL:automatic] synonym: "metepencephalon reticular formation biological structure of brain" EXACT [OBOL:automatic] synonym: "metepencephalon reticular formation brain anatomical structure" EXACT [OBOL:automatic] synonym: "metepencephalon reticular formation brain biological structure" EXACT [OBOL:automatic] synonym: "metepencephalon reticular formation neuraxis segment" EXACT [OBOL:automatic] synonym: "metepencephalon reticular formation regional part of brain" EXACT [OBOL:automatic] synonym: "metepencephalon reticular formation segment of brain" EXACT [OBOL:automatic] synonym: "neuraxis segment of bulb reticular formation" EXACT [OBOL:automatic] synonym: "neuraxis segment of bulbar reticular formation" EXACT [OBOL:automatic] synonym: "neuraxis segment of medulla oblongata reticular formation" EXACT [OBOL:automatic] synonym: "neuraxis segment of medulla oblonmgata reticular formation" EXACT [OBOL:automatic] synonym: "neuraxis segment of medullary reticular formation" EXACT [OBOL:automatic] synonym: "neuraxis segment of medullary reticular nucleus" EXACT [OBOL:automatic] synonym: "neuraxis segment of metepencephalon reticular formation" EXACT [OBOL:automatic] synonym: "neuraxis segment of reticular formation of bulb" EXACT [OBOL:automatic] synonym: "neuraxis segment of reticular formation of medulla" EXACT [OBOL:automatic] synonym: "neuraxis segment of reticular formation of medulla oblongata" EXACT [OBOL:automatic] synonym: "neuraxis segment of reticular formation of medulla oblonmgata" EXACT [OBOL:automatic] synonym: "neuraxis segment of reticular formation of metepencephalon" EXACT [OBOL:automatic] synonym: "neuraxis segment of rhombencephalic reticular formation" EXACT [OBOL:automatic] synonym: "regional part of brain of bulb reticular formation" EXACT [OBOL:automatic] synonym: "regional part of brain of bulbar reticular formation" EXACT [OBOL:automatic] synonym: "regional part of brain of medulla oblongata reticular formation" EXACT [OBOL:automatic] synonym: "regional part of brain of medulla oblonmgata reticular formation" EXACT [OBOL:automatic] synonym: "regional part of brain of medullary reticular formation" EXACT [OBOL:automatic] synonym: "regional part of brain of medullary reticular nucleus" EXACT [OBOL:automatic] synonym: "regional part of brain of metepencephalon reticular formation" EXACT [OBOL:automatic] synonym: "regional part of brain of reticular formation of bulb" EXACT [OBOL:automatic] synonym: "regional part of brain of reticular formation of medulla" EXACT [OBOL:automatic] synonym: "regional part of brain of reticular formation of medulla oblongata" EXACT [OBOL:automatic] synonym: "regional part of brain of reticular formation of medulla oblonmgata" EXACT [OBOL:automatic] synonym: "regional part of brain of reticular formation of metepencephalon" EXACT [OBOL:automatic] synonym: "regional part of brain of rhombencephalic reticular formation" EXACT [OBOL:automatic] synonym: "reticular formation of bulb anatomical structure of brain" EXACT [OBOL:automatic] synonym: "reticular formation of bulb biological structure of brain" EXACT [OBOL:automatic] synonym: "reticular formation of bulb brain anatomical structure" EXACT [OBOL:automatic] synonym: "reticular formation of bulb brain biological structure" EXACT [OBOL:automatic] synonym: "reticular formation of bulb neuraxis segment" EXACT [OBOL:automatic] synonym: "reticular formation of bulb regional part of brain" EXACT [OBOL:automatic] synonym: "reticular formation of bulb segment of brain" EXACT [OBOL:automatic] synonym: "reticular formation of medulla anatomical structure of brain" EXACT [OBOL:automatic] synonym: "reticular formation of medulla biological structure of brain" EXACT [OBOL:automatic] synonym: "reticular formation of medulla brain anatomical structure" EXACT [OBOL:automatic] synonym: "reticular formation of medulla brain biological structure" EXACT [OBOL:automatic] synonym: "reticular formation of medulla neuraxis segment" EXACT [OBOL:automatic] synonym: "reticular formation of medulla oblongata anatomical structure of brain" EXACT [OBOL:automatic] synonym: "reticular formation of medulla oblongata biological structure of brain" EXACT [OBOL:automatic] synonym: "reticular formation of medulla oblongata brain anatomical structure" EXACT [OBOL:automatic] synonym: "reticular formation of medulla oblongata brain biological structure" EXACT [OBOL:automatic] synonym: "reticular formation of medulla oblongata neuraxis segment" EXACT [OBOL:automatic] synonym: "reticular formation of medulla oblongata regional part of brain" EXACT [OBOL:automatic] synonym: "reticular formation of medulla oblongata segment of brain" EXACT [OBOL:automatic] synonym: "reticular formation of medulla oblonmgata anatomical structure of brain" EXACT [OBOL:automatic] synonym: "reticular formation of medulla oblonmgata biological structure of brain" EXACT [OBOL:automatic] synonym: "reticular formation of medulla oblonmgata brain anatomical structure" EXACT [OBOL:automatic] synonym: "reticular formation of medulla oblonmgata brain biological structure" EXACT [OBOL:automatic] synonym: "reticular formation of medulla oblonmgata neuraxis segment" EXACT [OBOL:automatic] synonym: "reticular formation of medulla oblonmgata regional part of brain" EXACT [OBOL:automatic] synonym: "reticular formation of medulla oblonmgata segment of brain" EXACT [OBOL:automatic] synonym: "reticular formation of medulla regional part of brain" EXACT [OBOL:automatic] synonym: "reticular formation of medulla segment of brain" EXACT [OBOL:automatic] synonym: "reticular formation of metepencephalon anatomical structure of brain" EXACT [OBOL:automatic] synonym: "reticular formation of metepencephalon biological structure of brain" EXACT [OBOL:automatic] synonym: "reticular formation of metepencephalon brain anatomical structure" EXACT [OBOL:automatic] synonym: "reticular formation of metepencephalon brain biological structure" EXACT [OBOL:automatic] synonym: "reticular formation of metepencephalon neuraxis segment" EXACT [OBOL:automatic] synonym: "reticular formation of metepencephalon regional part of brain" EXACT [OBOL:automatic] synonym: "reticular formation of metepencephalon segment of brain" EXACT [OBOL:automatic] synonym: "rhombencephalic reticular formation anatomical structure of brain" EXACT [OBOL:automatic] synonym: "rhombencephalic reticular formation biological structure of brain" EXACT [OBOL:automatic] synonym: "rhombencephalic reticular formation brain anatomical structure" EXACT [OBOL:automatic] synonym: "rhombencephalic reticular formation brain biological structure" EXACT [OBOL:automatic] synonym: "rhombencephalic reticular formation neuraxis segment" EXACT [OBOL:automatic] synonym: "rhombencephalic reticular formation regional part of brain" EXACT [OBOL:automatic] synonym: "rhombencephalic reticular formation segment of brain" EXACT [OBOL:automatic] synonym: "segment of brain of bulb reticular formation" EXACT [OBOL:automatic] synonym: "segment of brain of bulbar reticular formation" EXACT [OBOL:automatic] synonym: "segment of brain of medulla oblongata reticular formation" EXACT [OBOL:automatic] synonym: "segment of brain of medulla oblonmgata reticular formation" EXACT [OBOL:automatic] synonym: "segment of brain of medullary reticular formation" EXACT [OBOL:automatic] synonym: "segment of brain of medullary reticular nucleus" EXACT [OBOL:automatic] synonym: "segment of brain of metepencephalon reticular formation" EXACT [OBOL:automatic] synonym: "segment of brain of reticular formation of bulb" EXACT [OBOL:automatic] synonym: "segment of brain of reticular formation of medulla" EXACT [OBOL:automatic] synonym: "segment of brain of reticular formation of medulla oblongata" EXACT [OBOL:automatic] synonym: "segment of brain of reticular formation of medulla oblonmgata" EXACT [OBOL:automatic] synonym: "segment of brain of reticular formation of metepencephalon" EXACT [OBOL:automatic] synonym: "segment of brain of rhombencephalic reticular formation" EXACT [OBOL:automatic] synonym: "segment of medullary reticular formation" EXACT [NIF_GrossAnatomy:birnlex_1060] xref: FMA:73730 xref: NIF_GrossAnatomy:birnlex_1060 is_a: UBERON:0002678 ! regional part of medulla oblongata relationship: part_of UBERON:0002559 intersection_of: UBERON:0002616 ! regional part of brain intersection_of: part_of UBERON:0002559 ! medullary reticular formation [Term] id: UBERON:0002580 name: brachium of superior colliculus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1065-FMA_72417 def: "The brachium of superior colliculus (or superior brachium) extends lateralward from the superior colliculus, and, passing between the pulvinar and medial geniculate body, is partly continued into an eminence called the lateral geniculate body, and partly into the optic tract. [WP,unvetted]." [Wikipedia:Brachium_of_superior_colliculus] subset: uberon_slim synonym: "superior brachium" EXACT [FMA:72417] synonym: "superior collicular brachium" EXACT [FMA:72417] synonym: "superior colliculus brachium" EXACT [FMA:72417] synonym: "superior quadrigeminal brachium" EXACT [FMA:72417] xref: BM:MB-BSC xref: FMA:72417 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/Human_brainstem-thalamus_posterior_view_description.JPG/200px-Human_brainstem-thalamus_posterior_view_description.JPG xref: NIF_GrossAnatomy:birnlex_1065 is_a: UBERON:0002316 ! white matter is_a: UBERON:0002554 ! implied link automatically realized ! regional part of superior colliculus is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter relationship: part_of UBERON:0001945 ! superior colliculus [Term] id: UBERON:0002581 name: postcentral gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1070-FMA_61896 def: "The lateral postcentral gyrus is a prominent structure in the parietal lobe of the human brain and an important landmark. It was initially defined from surface stimulation studies of Penfield, and parallel surface potential studies of Bard, Woolsey, and Marshall. Although initially defined to be roughly the same as Brodmann areas 3, 1 and 2, more recent work by Kaas has suggested that for homogeny with other sensory fields only area 3 should be referred to as 'primary somatosensory cortex', as it received the bulk of the thalamocortical projection from the sensory input fields. [WP,unvetted]." [Wikipedia:Postcentral_gyrus] subset: uberon_slim synonym: "postcentral convolution" EXACT [FMA:61896] synonym: "posterior central gyrus" EXACT [FMA:61896] synonym: "postrolandic gyrus" EXACT [FMA:61896] xref: BTO:0004354 xref: EFO:0001383 xref: FMA:61896 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Postcentral_gyrus.png/200px-Postcentral_gyrus.png xref: ncithesaurus:Postcentral_Gyrus xref: NIF_GrossAnatomy:birnlex_1070 xref: SCTID:279167001 is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0001872 ! parietal lobe [Term] id: UBERON:0002582 name: anterior calcarine sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1072-FMA_83750 synonym: "anterior calcarine fissure" EXACT [FMA:83750] synonym: "sulcus calcarinus anterior" EXACT [NIF_GrossAnatomy:birnlex_1072] xref: FMA:83750 xref: NIF_GrossAnatomy:birnlex_1072 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002583 name: commissure of superior colliculus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1073-FMA_72418 def: "A commissure that is part of a superior colliculus [Obol]." [OBOL:automatic] subset: vertebrate_core synonym: "anterior colliculus commissure" EXACT [OBOL:automatic] synonym: "anterior corpus quadrigeminum commissure" EXACT [OBOL:automatic] synonym: "commissure of anterior colliculus" EXACT [OBOL:automatic] synonym: "commissure of anterior corpus quadrigeminum" EXACT [OBOL:automatic] synonym: "commissure of cranial colliculus" EXACT [OBOL:automatic] synonym: "commissure of optic tectum" EXACT [OBOL:automatic] synonym: "commissure of superior colliculi" EXACT [FMA:72418] synonym: "cranial colliculus commissure" EXACT [OBOL:automatic] synonym: "intertectal commissure" EXACT SENSU [ZFA:0000684] synonym: "optic tectum commissure" EXACT [OBOL:automatic] synonym: "superior colliculus commissure" EXACT [FMA:72418] xref: BM:MB-Tec-SC-SCX xref: FMA:72418 xref: NIF_GrossAnatomy:birnlex_1073 xref: SCTID:369258008 xref: ZFA:0000684 is_a: UBERON:0001020 ! commissure is_a: UBERON:0002554 ! implied link automatically realized ! regional part of superior colliculus is_a: UBERON:0005970 ! implied link automatically realized ! brain commissure relationship: part_of UBERON:0001945 intersection_of: UBERON:0001020 ! commissure intersection_of: part_of UBERON:0001945 ! superior colliculus relationship: part_of UBERON:0001945 ! superior colliculus [Term] id: UBERON:0002584 name: regional part of vestibular nuclear complex alt_id: UBERON:NIF_GrossAnatomy_birnlex_1080-FMA_71267 def: "A regional part of brain that is part of a vestibular nuclear complex [Obol]." [OBOL:automatic] synonym: "anatomical structure of brain of vestibular nuclear complex" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of vestibular nuclei" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of vestibular nuclei in medulla oblongata" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of vestibular nucleus" EXACT [OBOL:automatic] synonym: "biological structure of brain of vestibular nuclear complex" EXACT [OBOL:automatic] synonym: "biological structure of brain of vestibular nuclei" EXACT [OBOL:automatic] synonym: "biological structure of brain of vestibular nuclei in medulla oblongata" EXACT [OBOL:automatic] synonym: "biological structure of brain of vestibular nucleus" EXACT [OBOL:automatic] synonym: "brain anatomical structure of vestibular nuclear complex" EXACT [OBOL:automatic] synonym: "brain anatomical structure of vestibular nuclei" EXACT [OBOL:automatic] synonym: "brain anatomical structure of vestibular nuclei in medulla oblongata" EXACT [OBOL:automatic] synonym: "brain anatomical structure of vestibular nucleus" EXACT [OBOL:automatic] synonym: "brain biological structure of vestibular nuclear complex" EXACT [OBOL:automatic] synonym: "brain biological structure of vestibular nuclei" EXACT [OBOL:automatic] synonym: "brain biological structure of vestibular nuclei in medulla oblongata" EXACT [OBOL:automatic] synonym: "brain biological structure of vestibular nucleus" EXACT [OBOL:automatic] synonym: "neuraxis segment of vestibular nuclear complex" EXACT [OBOL:automatic] synonym: "neuraxis segment of vestibular nuclei" EXACT [OBOL:automatic] synonym: "neuraxis segment of vestibular nuclei in medulla oblongata" EXACT [OBOL:automatic] synonym: "neuraxis segment of vestibular nucleus" EXACT [OBOL:automatic] synonym: "regional part of brain of vestibular nuclear complex" EXACT [OBOL:automatic] synonym: "regional part of brain of vestibular nuclei" EXACT [OBOL:automatic] synonym: "regional part of brain of vestibular nuclei in medulla oblongata" EXACT [OBOL:automatic] synonym: "regional part of brain of vestibular nucleus" EXACT [OBOL:automatic] synonym: "segment of brain of vestibular nuclear complex" EXACT [OBOL:automatic] synonym: "segment of brain of vestibular nuclei" EXACT [OBOL:automatic] synonym: "segment of brain of vestibular nuclei in medulla oblongata" EXACT [OBOL:automatic] synonym: "segment of brain of vestibular nucleus" EXACT [OBOL:automatic] synonym: "segment of vestibular nuclear complex" EXACT [NIF_GrossAnatomy:birnlex_1080] synonym: "vestibular nuclear complex anatomical structure of brain" EXACT [OBOL:automatic] synonym: "vestibular nuclear complex biological structure of brain" EXACT [OBOL:automatic] synonym: "vestibular nuclear complex brain anatomical structure" EXACT [OBOL:automatic] synonym: "vestibular nuclear complex brain biological structure" EXACT [OBOL:automatic] synonym: "vestibular nuclear complex neuraxis segment" EXACT [OBOL:automatic] synonym: "vestibular nuclear complex regional part of brain" EXACT [OBOL:automatic] synonym: "vestibular nuclear complex segment" EXACT [FMA:71267] synonym: "vestibular nuclear complex segment of brain" EXACT [OBOL:automatic] synonym: "vestibular nuclei anatomical structure of brain" EXACT [OBOL:automatic] synonym: "vestibular nuclei biological structure of brain" EXACT [OBOL:automatic] synonym: "vestibular nuclei brain anatomical structure" EXACT [OBOL:automatic] synonym: "vestibular nuclei brain biological structure" EXACT [OBOL:automatic] synonym: "vestibular nuclei in medulla oblongata anatomical structure of brain" EXACT [OBOL:automatic] synonym: "vestibular nuclei in medulla oblongata biological structure of brain" EXACT [OBOL:automatic] synonym: "vestibular nuclei in medulla oblongata brain anatomical structure" EXACT [OBOL:automatic] synonym: "vestibular nuclei in medulla oblongata brain biological structure" EXACT [OBOL:automatic] synonym: "vestibular nuclei in medulla oblongata neuraxis segment" EXACT [OBOL:automatic] synonym: "vestibular nuclei in medulla oblongata regional part of brain" EXACT [OBOL:automatic] synonym: "vestibular nuclei in medulla oblongata segment of brain" EXACT [OBOL:automatic] synonym: "vestibular nuclei neuraxis segment" EXACT [OBOL:automatic] synonym: "vestibular nuclei regional part of brain" EXACT [OBOL:automatic] synonym: "vestibular nuclei segment of brain" EXACT [OBOL:automatic] synonym: "vestibular nucleus anatomical structure of brain" EXACT [OBOL:automatic] synonym: "vestibular nucleus biological structure of brain" EXACT [OBOL:automatic] synonym: "vestibular nucleus brain anatomical structure" EXACT [OBOL:automatic] synonym: "vestibular nucleus brain biological structure" EXACT [OBOL:automatic] synonym: "vestibular nucleus neuraxis segment" EXACT [OBOL:automatic] synonym: "vestibular nucleus regional part of brain" EXACT [OBOL:automatic] synonym: "vestibular nucleus segment of brain" EXACT [OBOL:automatic] xref: FMA:71267 xref: NIF_GrossAnatomy:birnlex_1080 is_a: UBERON:0002678 ! regional part of medulla oblongata relationship: part_of UBERON:0002673 intersection_of: UBERON:0002616 ! regional part of brain intersection_of: part_of UBERON:0002673 ! vestibular nuclear complex [Term] id: UBERON:0002585 name: central tegmental tract of midbrain alt_id: UBERON:NIF_GrossAnatomy_birnlex_1081-FMA_72456 xref: FMA:72456 xref: NIF_GrossAnatomy:birnlex_1081 xref: SCTID:369243000 is_a: UBERON:0002316 ! white matter is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0002586 name: calcarine sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1086-FMA_83749 def: "The calcarine fissure is an anatomical landmark located at the caudal end of the medial surface of the brain. [WP,unvetted]." [Wikipedia:Calcarine_sulcus] subset: uberon_slim synonym: "calcarine fissure" EXACT [FMA:83749] synonym: "sulcus calcarinus" EXACT [NIF_GrossAnatomy:birnlex_1086] xref: BM:Tel-Cx-CAS xref: FMA:83749 xref: ncithesaurus:Calcarine_Sulcus xref: NIF_GrossAnatomy:birnlex_1086 xref: SCTID:279355005 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002587 name: nucleus subceruleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1088-FMA_72479 synonym: "nucleus subcaeruleus" EXACT [FMA:72479, FMA:TA] synonym: "subcaerulean nucleus" EXACT [FMA:72479] xref: ABA:SLC xref: FMA:72479 xref: NIF_GrossAnatomy:birnlex_1088 is_a: UBERON:0002308 ! nucleus of brain relationship: spatially_disjoint_from UBERON:0002047 {source="ABA"} ! pontine raphe nucleus relationship: spatially_disjoint_from UBERON:0002148 {source="ABA"} ! locus ceruleus relationship: spatially_disjoint_from UBERON:0002267 {source="ABA"} ! laterodorsal tegmental nucleus relationship: spatially_disjoint_from UBERON:0003004 {source="ABA"} ! median raphe nucleus [Term] id: UBERON:0002588 name: decussation of superior cerebellar peduncle alt_id: UBERON:0003032 alt_id: UBERON:NIF_GrossAnatomy_birnlex_1089-FMA_72455 def: "Regional part of superior cerebellar peduncle located in the caudal midbrain, at the level of the inferior colliculus, consisting of a large bundle of fibers crossing the midline. It contains fibers projecting from the deep cerebellar nucleus to the midbrain and thalamus through the superior cerebellar peduncle (MM). The decussation of superior cerebellar peduncle is the portion of the superior cerebellar peduncle which crosses into the midbrain. [WP,unvetted]." [NIF_GrossAnatomy:birnlex_1089, Wikipedia:Decussation_of_superior_cerebellar_peduncle] subset: uberon_slim synonym: "decussatio pedunculorum cerebellarium superiorum" EXACT [FMA:72455, FMA:TA] synonym: "decussation of brachium conjunctivum" EXACT [FMA:72455] synonym: "decussation of superior cerebellar peduncles" EXACT [FMA:72455] synonym: "superior cerebellar peduncle decussation" EXACT [FMA:72455] synonym: "Wernekink's decussation" EXACT [FMA:72455] xref: BM:BCX xref: FMA:72455 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/26/Gray711.png/200px-Gray711.png xref: NIF_GrossAnatomy:birnlex_1089 xref: SCTID:369252009 is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter is_a: UBERON:0007418 ! decussation of neuraxis relationship: part_of UBERON:0001943 {source="FMA"} ! midbrain tegmentum relationship: part_of UBERON:0002150 ! superior cerebellar peduncle [Term] id: UBERON:0002589 name: lateral corticospinal tract alt_id: UBERON:NIF_GrossAnatomy_birnlex_1095-FMA_72635 def: "The lateral corticospinal tract (also called the crossed pyramidal tract or lateral cerebrospinal fasciculus) is the largest part of the corticospinal tract. It extends throughout the entire length of the medulla spinalis, and on transverse section appears as an oval area in front of the posterior column and medial to the posterior spinocerebellar tract. Its fibres arise from cells in the motor area of the cerebral hemisphere of the opposite side. They pass downward in company with those of the anterior corticospinal tract through the same side of the brain as that from which they originate, but they cross to the opposite side in the medulla oblongata and descend in the lateral funiculus of the medulla spinalis. The lateral corticospinal tract controls movement of contralateral limbs. Control of more central axial and girdle muscles comes from the anterior corticospinal tract. [WP,unvetted]." [Wikipedia:Lateral_corticospinal_tract] subset: uberon_slim synonym: "lateral pyramidal tract" EXACT [FMA:72635] xref: FMA:72635 xref: NIF_GrossAnatomy:birnlex_1095 xref: SCTID:369091005 is_a: UBERON:0002316 ! white matter is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002590 name: prepyriform area alt_id: UBERON:NIF_GrossAnatomy_birnlex_1097-FMA_62484 synonym: "(pre-)piriform cortex" EXACT [NIF_GrossAnatomy:birnlex_1097] synonym: "gyrus olfactorius lateralis" EXACT [FMA:62484, FMA:TA] synonym: "lateral olfactory gyrus" EXACT [FMA:62484] synonym: "piriform cortex (price)" EXACT [] synonym: "piriform olfactory cortex" EXACT [NIF_GrossAnatomy:birnlex_1097] synonym: "prepiriform cortex" EXACT [FMA:62484] synonym: "prepyriform cortex" EXACT [FMA:62484] synonym: "pyriform area" EXACT [NIF_GrossAnatomy:birnlex_1097] xref: ABA:PIR xref: BM:Tel-PRP xref: FMA:62484 xref: NIF_GrossAnatomy:birnlex_1097 xref: SCTID:369104008 is_a: UBERON:0000064 ! organ part relationship: spatially_disjoint_from UBERON:0002266 {source="ABA"} ! anterior olfactory nucleus relationship: spatially_disjoint_from UBERON:0002893 {source="ABA"} ! nucleus of lateral olfactory tract relationship: spatially_disjoint_from UBERON:0004069 {source="ABA"} ! accessory olfactory bulb [Term] id: UBERON:0002591 name: oral part of spinal trigeminal nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1100-FMA_235322 xref: ABA:SPVO xref: FMA:235322 xref: NIF_GrossAnatomy:birnlex_1100 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001717 ! spinal nucleus of trigeminal nerve relationship: spatially_disjoint_from UBERON:0002126 {source="ABA"} ! solitary tract nuclear complex relationship: spatially_disjoint_from UBERON:0002162 {source="ABA"} ! area postrema relationship: spatially_disjoint_from UBERON:0002610 {source="ABA"} ! cochlear nuclear complex relationship: spatially_disjoint_from UBERON:0002864 {source="ABA"} ! accessory cuneate nucleus relationship: spatially_disjoint_from UBERON:0002866 {source="ABA"} ! caudal part of spinal trigeminal nucleus relationship: spatially_disjoint_from UBERON:0002873 {source="ABA"} ! interpolar part of spinal trigeminal nucleus relationship: spatially_disjoint_from UBERON:0007633 {source="ABA"} ! nucleus of trapezoid body [Term] id: UBERON:0002592 name: juxtarestiform body alt_id: UBERON:NIF_GrossAnatomy_birnlex_1101-FMA_72613 def: "The juxtarestiform body is a subdivision of the inferior cerebellar peduncle, which comprises both the juxtarestiform and restiform bodies. [WP,unvetted]." [Wikipedia:Juxtarestiform_body] subset: uberon_slim xref: FMA:72613 xref: NIF_GrossAnatomy:birnlex_1101 xref: SCTID:110687007 is_a: UBERON:0002316 ! white matter is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002593 name: orbital operculum alt_id: UBERON:NIF_GrossAnatomy_birnlex_1102-FMA_74887 xref: FMA:74887 xref: NIF_GrossAnatomy:birnlex_1102 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0002594 name: dentatothalamic tract alt_id: UBERON:NIF_GrossAnatomy_birnlex_1104-FMA_72462 def: "The dentatothalamic tract (or dentatorubrothalamic tract) is a tract which connects the dentate nucleus and the thalamus. [WP,unvetted]." [Wikipedia:Dentatothalamic_tract] subset: uberon_slim synonym: "dentatothalamic fibers" EXACT [FMA:72462] xref: FMA:72462 xref: NIF_GrossAnatomy:birnlex_1104 is_a: UBERON:0002316 ! white matter is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0002595 name: orbital sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1112-FMA_83770 synonym: "cruciate sulcus of campbell" EXACT [NIF_GrossAnatomy:birnlex_1112] synonym: "orbital sulci" EXACT [FMA:83770] synonym: "sulcus orbitalis" EXACT [NIF_GrossAnatomy:birnlex_1112] xref: BM:Tel-Cx-ORS xref: FMA:83770 xref: ncithesaurus:Orbital_Sulcus xref: NIF_GrossAnatomy:birnlex_1112 xref: SCTID:314143008 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002596 name: ventral posterior nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1116-FMA_62187 def: "The ventral posterior nucleus is the somato-sensory relay nucleus in thalamus of the brain. [WP,unvetted]." [Wikipedia:Ventral_posterior_nucleus] subset: uberon_slim synonym: "nucleus ventrales posteriores" EXACT [NIF_GrossAnatomy:birnlex_1116] synonym: "nucleus ventralis posterior" EXACT [NIF_GrossAnatomy:birnlex_1116] synonym: "ventral posterior thalamic nucleus" EXACT [FMA:62187] synonym: "ventrobasal complex" EXACT [FMA:62187] synonym: "ventrobasal nucleus" EXACT [FMA:62187] xref: BM:Die-Th-VPI xref: BTO:0004373 xref: BTO:0004374 xref: EV:0100209 xref: FMA:62187 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/ThalamicNuclei.png/200px-ThalamicNuclei.png xref: NIF_GrossAnatomy:birnlex_1116 xref: SCTID:279147005 is_a: UBERON:0002308 {source="FMA"} ! nucleus of brain is_a: UBERON:0007692 ! implied link automatically realized ! nucleus of thalamus relationship: part_of UBERON:0002776 {source="FMA"} ! ventral nuclear group [Term] id: UBERON:0002597 name: principal sensory nucleus of trigeminal nerve alt_id: UBERON:NIF_GrossAnatomy_birnlex_1120-FMA_54533 def: "The principal sensory nucleus (or chief sensory nucleus of V) is a group of second order neurons which have cell bodies in the dorsal Pons. It receives information about discriminative sensation and light touch of the face as well as conscious proprioception of the jaw via first order neurons of CN V. Most of the sensory information crosses the midline and travels to the contralateral ventral posteriomedial (VPM) of the thalamus via the Ventral Trigeminothalamic Tract, but information of the oral cavity travels to the ipsilateral Ventral Posteriomedial (VPM) of the thalamus via the Dorsal Trigeminothalamic Tract. [WP,unvetted]." [GO:0021730, Wikipedia:Chief_sensory_nucleus] comment: GO has pontine nucleus as a child of trigeminal sensory nucleus, WP says this is a synonym, but we have a separate class for this - UBERON:0002151 subset: uberon_slim synonym: "chief sensory nucleus" EXACT [FMA:54533] synonym: "main sensory nucleus" EXACT [FMA:54533] synonym: "main sensory nucleus of cranial nerve v" EXACT [] synonym: "pontine nucleus" RELATED INCONSISTENT [GO:0021740, Wikipedia:Trigeminal_nuclei] synonym: "principal sensory nucleus" EXACT [] synonym: "principal sensory nucleus of trigeminal nerve" EXACT [FMA:54533] synonym: "principal sensory trigeminal nucleus" EXACT [FMA:54533] synonym: "principal trigeminal nucleus" EXACT [FMA:54533] synonym: "superior trigeminal nucleus" EXACT [FMA:54533] synonym: "superior trigeminal sensory nucleus" EXACT [FMA:54533] synonym: "trigeminal nerve superior sensory nucleus" EXACT [FMA:54533] synonym: "trigeminal V chief sensory nucleus" EXACT [MA:0002740] synonym: "trigeminal V principal sensory nucleus" EXACT [MA:0002740] xref: ABA:PSV xref: BM:VP xref: EV:0100274 xref: FMA:54533 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray696.png/200px-Gray696.png xref: MA:0002740 xref: ncithesaurus:Principal_Sensory_Nucleus_of_the_Trigeminal_Nerve xref: NIF_GrossAnatomy:birnlex_1120 xref: SCTID:369031008 is_a: UBERON:0004132 {source="MA"} ! trigeminal sensory nucleus is_a: UBERON:0006331 ! implied link automatically realized ! brainstem nucleus is_a: UBERON:0009662 ! implied link automatically realized ! hindbrain nucleus relationship: part_of UBERON:0003023 {source="NIF"} ! pontine tegmentum relationship: spatially_disjoint_from UBERON:0002128 {source="ABA"} ! superior olivary complex relationship: spatially_disjoint_from UBERON:0006840 {source="ABA"} ! nucleus of lateral lemniscus relationship: spatially_disjoint_from UBERON:0007634 {source="ABA"} ! parabrachial nucleus [Term] id: UBERON:0002598 name: paracentral sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1121-FMA_83762 synonym: "sulcus subcentralis medialis" EXACT [NIF_GrossAnatomy:birnlex_1121] xref: FMA:83762 xref: NIF_GrossAnatomy:birnlex_1121 xref: SCTID:369228002 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002599 name: medial olfactory gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1127-FMA_74509 xref: FMA:74509 xref: NIF_GrossAnatomy:birnlex_1127 xref: SCTID:369103002 is_a: UBERON:0000200 ! gyrus [Term] id: UBERON:0002600 name: limbic lobe alt_id: UBERON:NIF_GrossAnatomy_birnlex_1128-FMA_72719 def: "The limbic lobe (also known as the Cingulate) is a portion of the brain associated with functions such as olfaction and emotion. It contains parts of other lobes, including the frontal, parietal, and temporal. Its main components are the fornicate gyrus, the hippocampus, and the amygdala It is related to the term limbic system, but unlike that term, 'limbic lobe' is a part of the Terminologia Anatomica, and there is less disagreement over what is included in the 'limbic lobe' than there is over what is included in the 'limbic system'. [WP,unvetted]." [Wikipedia:Limbic_lobe] subset: uberon_slim synonym: "fornicate gyrus" EXACT [FMA:72719] synonym: "grande lobe limbique of broca" EXACT [] synonym: "limbic lobe (carpenter)" EXACT [] xref: FMA:72719 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Human_brain_inferior-medial_view_description.JPG/200px-Human_brain_inferior-medial_view_description.JPG xref: NIF_GrossAnatomy:birnlex_1128 xref: SCTID:279215006 is_a: UBERON:0003022 ! lobe parts of cerebral cortex [Term] id: UBERON:0002601 name: fasciolar gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1129-FMA_61921 def: "a small paired band that passes around the splenium of the corpus callosum from the lateral longitudinal stria to the dentate gyrus[Biology-Online]. A posterior and upward extension of the dentate gyrus, forming a transitional area between the dentate gyrus and the indusium griseum[BTO]." [BTO:0002497, http://www.biology-online.org/dictionary/Fasciolar_gyrus] comment: TODO - existing definitions, synonyms and relationships in existing AOs seem contradictory; to be resolved. We take the dentate gyrus relationship from BTO, and it is also implied by the FMA synonym. However, FMA says archiortex (embryonic archicortex corresponds to the cortex of the dentate gyrus and hippocampus) and NIF says limbic lobe (which is more general than hippocampus). ABA xref made on basis of BTO related synonym synonym: "fasciola cinerea" RELATED [BTO:0002497] synonym: "gyrus fasciolaris" RELATED [BTO:0002497] synonym: "retrosplenial gyrus of hippocampus" EXACT [FMA:61921] xref: ABA:FC xref: BTO:0002497 xref: FMA:61921 xref: NIF_GrossAnatomy:birnlex_1129 xref: SCTID:279210001 is_a: UBERON:0000200 ! gyrus relationship: spatially_disjoint_from UBERON:0001885 {source="ABA"} ! dentate gyrus of hippocampal formation relationship: spatially_disjoint_from UBERON:0001954 {source="ABA"} ! Ammon's horn [Term] id: UBERON:0002602 name: emboliform nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1135-FMA_72538 def: "The emboliform nucleus lies immediately to the medial side of the nucleus dentatus, and partly covering its hilus. It is one among the four pairs of cerebellar nuclei, which are from lateral to medial: the dentate, interposed (emboliform and globose), and fastigial nuclei. These nuclei can be seen using the Weigert method staining. [WP,unvetted]." [Wikipedia:Emboliform_nucleus] subset: uberon_slim synonym: "anterior interposed nucleus" EXACT [FMA:72538] synonym: "anterior interpositus nucleus" EXACT [FMA:72538] synonym: "nucleus interpositus anterior" EXACT [FMA:72538, FMA:TA] xref: FMA:72538 xref: NIF_GrossAnatomy:birnlex_1135 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002946 ! implied link automatically realized ! regional part of cerebellum is_a: UBERON:0009662 ! implied link automatically realized ! hindbrain nucleus relationship: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0002603 name: paraterminal gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1138-FMA_61919 def: "The paraterminal gyrus (subcallosal gyrus, peduncle of the corpus callosum) is a narrow lamina on the medial surface of the hemisphere in front of the lamina terminalis, behind the parolfactory area, and below the rostrum of the corpus callosum. It is continuous around the genu of the corpus callosum with the supracallosal gyrus. [WP,unvetted]." [Wikipedia:Paraterminal_gyrus] subset: uberon_slim synonym: "precommissural hippocampus" EXACT [FMA:61919] synonym: "subcallosal gyrus" EXACT [FMA:61919] xref: FMA:61919 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4d/Gray732.png/200px-Gray732.png xref: NIF_GrossAnatomy:birnlex_1138 is_a: UBERON:0002665 ! supracallosal gyrus [Term] id: UBERON:0002604 name: ventral nucleus of lateral lemniscus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1140-FMA_72484 def: "The lateral lemniscus is a tract of axons in the brainstem that carries information about sound from the cochlear nucleus to various brainstem nuclei and ultimately the contralateral inferior colliculus of the midbrain. Three distinct, primarily inhibitory, cellular groups are located interspersed within these fibers, and are thus named the nuclei of the lateral lemniscus. [WP,unvetted]." [Wikipedia:Ventral_nucleus_of_the_lateral_lemniscus] subset: uberon_slim synonym: "anterior nucleus of lateral lemniscus" EXACT [FMA:72484] synonym: "nucleus anterior lemnisci lateralis" EXACT [FMA:72484, FMA:TA] synonym: "nucleus of the lateral lemniscus, ventral part" EXACT [ABA:NLLv] synonym: "ventral nucleus of the lateral lemniscus" EXACT [FMA:72484] xref: ABA:NLLv xref: BM:LLV xref: FMA:72484 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/44/Lateral_lemniscus.PNG/200px-Lateral_lemniscus.PNG xref: NIF_GrossAnatomy:birnlex_1140 is_a: UBERON:0006331 ! implied link automatically realized ! brainstem nucleus is_a: UBERON:0006840 ! nucleus of lateral lemniscus is_a: UBERON:0009662 ! implied link automatically realized ! hindbrain nucleus relationship: part_of UBERON:0003023 {source="FMA", source="NIF"} ! pontine tegmentum [Term] id: UBERON:0002605 name: precentral operculum alt_id: UBERON:NIF_GrossAnatomy_birnlex_1141-FMA_74888 xref: FMA:74888 xref: NIF_GrossAnatomy:birnlex_1141 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0002606 name: neuropil alt_id: UBERON:NIF_GrossAnatomy_birnlex_1142-FMA_261269 def: "A dense intricate feltwork of interwoven fine glial processes, fibrils, synaptic terminals, axons, and dendrites interspersed among the nerve cells of the central nervous system (MSH)[NIF]." [NIF_Subcellular:sao205380252, Wikipedia:Neuropil] comment: check re portion of neural tissue. subset: uberon_slim xref: FBbt:00005139 xref: FMA:261269 xref: GAID:740 xref: MESH:A.08.637.500 xref: ncithesaurus:Neuropil xref: NIF_GrossAnatomy:birnlex_1142 xref: NIF_Subcellular:sao205380252 xref: SCTID:67146008 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0002607 name: superior rostral sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1143-FMA_83766 synonym: "sulcus rostralis superior" EXACT [NIF_GrossAnatomy:birnlex_1143] xref: FMA:83766 xref: NIF_GrossAnatomy:birnlex_1143 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002608 name: caudal part of ventral lateral nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1144-FMA_62194 synonym: "dorsal part of ventral lateral posterior nucleus (jones)" EXACT [] synonym: "nucleus dorsooralis (van buren)" EXACT [NIF_GrossAnatomy:birnlex_1144] synonym: "nucleus lateralis intermedius mediodorsalis situs dorsalis" EXACT [NIF_GrossAnatomy:birnlex_1144] synonym: "nucleus ventralis lateralis, pars caudalis" EXACT [NIF_GrossAnatomy:birnlex_1144] synonym: "ventral lateral nucleus, caudal part" EXACT [FMA:62194] synonym: "ventral lateral thalamic nucleus, caudal part" EXACT [FMA:62194] xref: FMA:62194 xref: NIF_GrossAnatomy:birnlex_1144 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001925 ! ventral lateral nucleus [Term] id: UBERON:0002609 name: spinothalamic tract of midbrain alt_id: UBERON:NIF_GrossAnatomy_birnlex_1150-FMA_72463 xref: FMA:72463 xref: NIF_GrossAnatomy:birnlex_1150 xref: SCTID:369090006 is_a: UBERON:0007702 {source="FMA"} ! tract of brain relationship: part_of UBERON:0001943 ! midbrain tegmentum relationship: part_of UBERON:0007703 ! spinothalamic tract [Term] id: UBERON:0002610 name: cochlear nuclear complex alt_id: UBERON:NIF_GrossAnatomy_birnlex_1151-FMA_72240 def: "The cochlear nuclei consist of: (a) the dorsal cochlear nucleus, corresponding to the tuberculum acusticum on the dorso-lateral surface of the inferior peduncle; and (b) the ventral or accessory cochlear nucleus, placed between the two divisions of the nerve, on the ventral aspect of the inferior peduncle. [WP,unvetted]." [Wikipedia:Cochlear_nuclei] subset: uberon_slim synonym: "cochlear nuclei" EXACT [FMA:72240] xref: ABA:CN xref: BM:Me-Co xref: EV:0100260 xref: FMA:72240 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Gray691.png/200px-Gray691.png xref: ncithesaurus:Cochlear_Nuclei xref: NIF_GrossAnatomy:birnlex_1151 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001896 ! medulla oblongata relationship: spatially_disjoint_from UBERON:0002126 {source="ABA"} ! solitary tract nuclear complex relationship: spatially_disjoint_from UBERON:0002162 {source="ABA"} ! area postrema relationship: spatially_disjoint_from UBERON:0002591 {source="ABA"} ! oral part of spinal trigeminal nucleus relationship: spatially_disjoint_from UBERON:0002864 {source="ABA"} ! accessory cuneate nucleus relationship: spatially_disjoint_from UBERON:0002866 {source="ABA"} ! caudal part of spinal trigeminal nucleus relationship: spatially_disjoint_from UBERON:0002873 {source="ABA"} ! interpolar part of spinal trigeminal nucleus relationship: spatially_disjoint_from UBERON:0007633 {source="ABA"} ! nucleus of trapezoid body [Term] id: UBERON:0002611 name: node of ranvier alt_id: UBERON:NIF_GrossAnatomy_birnlex_1152-FMA_67368 def: "." [Wikipedia:Node_of_ranvier] comment: in GO subset: uberon_slim synonym: "ranvier node" EXACT [FMA:67368] synonym: "ranvier's node" EXACT [FMA:67368] xref: FMA:67368 xref: GAID:748 xref: GO:0033268 xref: ncithesaurus:Node_of_Ranvier xref: NIF_GrossAnatomy:birnlex_1152 is_obsolete: true [Term] id: UBERON:0002612 name: transverse orbital sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1155-FMA_83771 synonym: "sulcus orbitalis transversus" EXACT [NIF_GrossAnatomy:birnlex_1155] xref: FMA:83771 xref: NIF_GrossAnatomy:birnlex_1155 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002613 name: globose nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1158-FMA_72536 def: "The globose nucleus is one of the deep cerebellar nuclei. It is located medial to the emboliform nucleus and lateral to the fastigial nucleus. This nucleus contains primarily large and small multipolar neurons. The globose nucleus and emboliform nucleus are occasionally referred to collectively as the interposed nucleus. [WP,unvetted]." [Wikipedia:Globose_nucleus] subset: uberon_slim synonym: "nucleus interpositus posterior" EXACT [FMA:72536, FMA:TA] synonym: "posterior interposed nucleus" EXACT [FMA:72536] synonym: "posterior interpositus nucleus" EXACT [FMA:72536] xref: FMA:72536 xref: NIF_GrossAnatomy:birnlex_1158 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002946 ! implied link automatically realized ! regional part of cerebellum is_a: UBERON:0009662 ! implied link automatically realized ! hindbrain nucleus relationship: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0002614 name: medial part of ventral lateral nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1159-FMA_62195 synonym: "nucleus ventralis lateralis thalami, pars medialis" EXACT [NIF_GrossAnatomy:birnlex_1159] synonym: "nucleus ventrooralis medialis (hassler)" EXACT [NIF_GrossAnatomy:birnlex_1159] synonym: "ventral lateral nucleus, medial part" EXACT [FMA:62195] synonym: "ventral medial nucleus" EXACT [FMA:62195] synonym: "ventral medial nucleus of thalamus" EXACT [NIF_GrossAnatomy:birnlex_1159] xref: ABA:VM xref: BM:Die-Th-VM xref: FMA:62195 xref: NIF_GrossAnatomy:birnlex_1159 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001925 ! ventral lateral nucleus [Term] id: UBERON:0002615 name: ventral tegmental decussation alt_id: UBERON:NIF_GrossAnatomy_birnlex_1163-FMA_72452 synonym: "anterior tegmental decussation" EXACT [FMA:72452] synonym: "decussatio tegmentalis anterior" EXACT [FMA:72452, FMA:TA] synonym: "decussation of forel" EXACT [] synonym: "ventral tegmental decussation of forel" EXACT [] xref: FMA:72452 xref: NIF_GrossAnatomy:birnlex_1163 xref: SCTID:369249001 is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter is_a: UBERON:0007418 ! decussation of neuraxis relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0002616 name: regional part of brain alt_id: UBERON:NIF_GrossAnatomy_birnlex_1167-FMA_55676 def: "An anatomical structure that is part of a brain [Obol]." [OBOL:automatic] synonym: "anatomical structure of brain" EXACT [OBOL:automatic] synonym: "biological structure of brain" EXACT [OBOL:automatic] synonym: "brain anatomical structure" EXACT [OBOL:automatic] synonym: "brain biological structure" EXACT [OBOL:automatic] synonym: "neuraxis segment" EXACT [FMA:55676] synonym: "segment of brain" EXACT [NIF_GrossAnatomy:birnlex_1167] xref: FMA:55676 xref: NIF_GrossAnatomy:birnlex_1167 xref: SCTID:384763002 is_a: UBERON:0000073 ! regional part of nervous system relationship: part_of UBERON:0000955 intersection_of: UBERON:0000061 ! anatomical structure intersection_of: part_of UBERON:0000955 ! brain [Term] id: UBERON:0002617 name: pars postrema of ventral lateral nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1170-FMA_62196 synonym: "nucleus dorsointermedius externus magnocellularis (hassler)" EXACT [NIF_GrossAnatomy:birnlex_1170] synonym: "nucleus lateralis intermedius mediodorsalis situs postremus" EXACT [NIF_GrossAnatomy:birnlex_1170] synonym: "nucleus ventralis lateralis thalami, pars postrema" EXACT [NIF_GrossAnatomy:birnlex_1170] synonym: "posterodorsal part of ventral lateral posterior nucleus (jones)" EXACT [] synonym: "ventral lateral nucleus (pars postrema)" EXACT [FMA:62196] xref: FMA:62196 xref: NIF_GrossAnatomy:birnlex_1170 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001925 ! ventral lateral nucleus [Term] id: UBERON:0002618 name: trochlear nerve fibers alt_id: UBERON:0002674 alt_id: UBERON:NIF_GrossAnatomy_birnlex_1172-FMA_71116 synonym: "central part of trochlear nerve" EXACT [FMA:71116] synonym: "trochlear nerve fibers" EXACT [FMA:71116] synonym: "trochlear nerve root" EXACT [FMA:71116] synonym: "trochlear nerve tract" EXACT [FMA:71116] xref: FMA:71116 xref: NIF_GrossAnatomy:birnlex_1172 is_a: UBERON:0006843 {source="FMA"} ! root of cranial nerve [Term] id: UBERON:0002619 name: regional part of cerebral cortex alt_id: UBERON:0003208 alt_id: UBERON:NIF_GrossAnatomy_birnlex_1173-FMA_68603 def: "A regional part of brain that is part of a cerebral cortex [Obol]." [OBOL:automatic] comment: todo - check MA term synonym: "cerebral cortex part" EXACT [] synonym: "region of cerebral cortex" EXACT [FMA:242193] synonym: "segment of cerebral cortex" NARROW [NIF_GrossAnatomy:birnlex_1173] xref: FMA:242193 xref: MA:0000187 xref: NIF_GrossAnatomy:birnlex_1173 xref: SCTID:119408004 is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon relationship: part_of UBERON:0000956 intersection_of: UBERON:0002616 ! regional part of brain intersection_of: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0002620 name: tuber cinereum alt_id: UBERON:NIF_GrossAnatomy_birnlex_1189-FMA_62327 def: "The tuber cinereum is a hollow eminence of gray matter situated between the mammilary bodies and the optic chiasm. The tuber cinereum is part of the hypothalamus. [WP,unvetted]." [Wikipedia:Tuber_cinereum] subset: uberon_slim xref: FMA:62327 xref: GAID:649 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d7/Gray724.png/200px-Gray724.png xref: MESH:A.08.186.211.730.385.357.352.870 xref: ncithesaurus:Tuber_Cinereum xref: NIF_GrossAnatomy:birnlex_1189 xref: SCTID:362381006 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0002621 name: regional part of cochlear nuclear complex alt_id: UBERON:NIF_GrossAnatomy_birnlex_1195-FMA_83952 def: "A regional part of brain that is part of a cochlear nuclear complex [Obol]." [OBOL:automatic] synonym: "anatomical structure of brain of cochlear nuclear complex" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of cochlear nuclei" EXACT [OBOL:automatic] synonym: "biological structure of brain of cochlear nuclear complex" EXACT [OBOL:automatic] synonym: "biological structure of brain of cochlear nuclei" EXACT [OBOL:automatic] synonym: "brain anatomical structure of cochlear nuclear complex" EXACT [OBOL:automatic] synonym: "brain anatomical structure of cochlear nuclei" EXACT [OBOL:automatic] synonym: "brain biological structure of cochlear nuclear complex" EXACT [OBOL:automatic] synonym: "brain biological structure of cochlear nuclei" EXACT [OBOL:automatic] synonym: "cochlear nuclear complex anatomical structure of brain" EXACT [OBOL:automatic] synonym: "cochlear nuclear complex biological structure of brain" EXACT [OBOL:automatic] synonym: "cochlear nuclear complex brain anatomical structure" EXACT [OBOL:automatic] synonym: "cochlear nuclear complex brain biological structure" EXACT [OBOL:automatic] synonym: "cochlear nuclear complex neuraxis segment" EXACT [OBOL:automatic] synonym: "cochlear nuclear complex regional part of brain" EXACT [OBOL:automatic] synonym: "cochlear nuclear complex segment" EXACT [FMA:83952] synonym: "cochlear nuclear complex segment of brain" EXACT [OBOL:automatic] synonym: "cochlear nuclei anatomical structure of brain" EXACT [OBOL:automatic] synonym: "cochlear nuclei biological structure of brain" EXACT [OBOL:automatic] synonym: "cochlear nuclei brain anatomical structure" EXACT [OBOL:automatic] synonym: "cochlear nuclei brain biological structure" EXACT [OBOL:automatic] synonym: "cochlear nuclei neuraxis segment" EXACT [OBOL:automatic] synonym: "cochlear nuclei regional part of brain" EXACT [OBOL:automatic] synonym: "cochlear nuclei segment of brain" EXACT [OBOL:automatic] synonym: "neuraxis segment of cochlear nuclear complex" EXACT [OBOL:automatic] synonym: "neuraxis segment of cochlear nuclei" EXACT [OBOL:automatic] synonym: "regional part of brain of cochlear nuclear complex" EXACT [OBOL:automatic] synonym: "regional part of brain of cochlear nuclei" EXACT [OBOL:automatic] synonym: "segment of brain of cochlear nuclear complex" EXACT [OBOL:automatic] synonym: "segment of brain of cochlear nuclei" EXACT [OBOL:automatic] synonym: "segment of cochlear nuclear complex" EXACT [NIF_GrossAnatomy:birnlex_1195] xref: FMA:83952 xref: NIF_GrossAnatomy:birnlex_1195 is_a: UBERON:0002678 ! regional part of medulla oblongata relationship: part_of UBERON:0002610 intersection_of: UBERON:0002616 ! regional part of brain intersection_of: part_of UBERON:0002610 ! cochlear nuclear complex [Term] id: UBERON:0002622 name: preoptic periventricular nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1201-FMA_62324 def: "The preoptic periventricular nucleus is located along the midline and is medial to the medial preoptic nucleus.[WP,unvetted]." [Wikipedia:Preoptic_area#Preoptic_periventricular_nucleus] synonym: "nucleus preopticus periventricularis" EXACT [FMA:62324, FMA:TA] synonym: "periventricular preoptic nucleus" EXACT [FMA:62324] synonym: "preoptic periventricular hypothalamic nucleus" EXACT [FMA:62324] xref: FMA:62324 xref: NIF_GrossAnatomy:birnlex_1201 xref: SCTID:369127000 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0007251 ! implied link automatically realized ! preoptic nucleus relationship: part_of UBERON:0001928 ! preoptic area [Term] id: UBERON:0002623 name: cerebral peduncle alt_id: UBERON:NIF_GrossAnatomy_birnlex_1202-FMA_62394 def: "The cerebral peduncle, by most classifications, is everything in the mesencephalon except the tectum. The region includes the midbrain tegmentum, crus cerebri, substantia nigra and pretectum. By this definition, the cerebral peduncles are also known as the basis pedunculi, while the large ventral bundle of efferent fibers is referred to as the crus cerebri or the pes pedunculi There are numerous nerve tracts located within this section of the brainstem. Of note, in the cerebral peduncular loop fibers from motor areas of the brain project to the cerebral peduncle and then project to various thalamic nuclei. In as much as the peduncles are an anatomic landmark, for details regarding the function of this area interested readers are referred to the individual referenced articles. On a broad scale, though, this area contains many nerve tracts conveying motor information to and from the brain to the rest of the body. Important fibers running through the cerebral peduncles include the corticospinal tract and the corticobulbar tract, among others. [WP,unvetted]." [Wikipedia:Cerebral_peduncle] subset: uberon_slim synonym: "cerebral peduncle" EXACT [FMA:62394] synonym: "peduncle of midbrain" EXACT [FMA:62394] synonym: "pedunculus cerebri" EXACT [FMA:62394, FMA:TA] xref: BM:CP xref: BTO:0004676 xref: EFO:0001987 xref: FMA:62394 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e9/Gray689.png/200px-Gray689.png xref: ncithesaurus:Cerebral_Peduncle xref: NIF_GrossAnatomy:birnlex_1202 xref: SCTID:362391000 is_a: UBERON:0007417 {source="FMA"} ! peduncle of neuraxis relationship: has_part UBERON:0001943 ! midbrain tegmentum relationship: has_part UBERON:0002038 ! substantia nigra [Term] id: UBERON:0002624 name: orbital part of inferior frontal gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1207-FMA_61982 synonym: "inferior frontal gyrus, orbital part" EXACT [FMA:61982] synonym: "pars orbitalis gyri frontalis inferioris" EXACT [NIF_GrossAnatomy:birnlex_1207] xref: FMA:61982 xref: ncithesaurus:Orbital_Part_of_the_Inferior_Frontal_Gyrus xref: NIF_GrossAnatomy:birnlex_1207 is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0002625 name: median preoptic nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1208-FMA_62323 def: "The median preoptic nucleus is located along the midline in a position significantly dorsal to the other 3 preoptic nuclei, at least in the macaca fascicularis brain. It wraps around the top (dorsal), front, and bottom (ventral) surfaces of the anterior commissure. The median preoptic nucleus generates thirst. Drinking decreases noradrenaline release in the median preoptic nucleus." [Wikipedia:Preoptic_area#Median_preoptic_nucleus] subset: uberon_slim xref: ABA:MEPO xref: BM:MPO xref: FMA:62323 xref: NIF_GrossAnatomy:birnlex_1208 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0007251 ! implied link automatically realized ! preoptic nucleus relationship: part_of UBERON:0001928 ! preoptic area relationship: spatially_disjoint_from UBERON:0001934 {source="ABA"} ! dorsomedial nucleus of hypothalamus relationship: spatially_disjoint_from UBERON:0002034 {source="ABA"} ! suprachiasmatic nucleus relationship: spatially_disjoint_from UBERON:0002219 {source="ABA"} ! subfornical organ relationship: spatially_disjoint_from UBERON:0002689 {source="ABA"} ! supraoptic crest relationship: spatially_disjoint_from UBERON:0002690 {source="ABA"} ! anteroventral periventricular nucleus relationship: spatially_disjoint_from UBERON:0007626 {source="ABA"} ! subparaventricular zone [Term] id: UBERON:0002626 name: head of caudate nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1212-FMA_61852 synonym: "caput (caudatus)" EXACT [FMA:61852] synonym: "caudate nuclear head" EXACT [FMA:61852] xref: EMAPA:18547 xref: FMA:61852 xref: NIF_GrossAnatomy:birnlex_1212 xref: SCTID:279298007 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001873 ! caudate nucleus [Term] id: UBERON:0002627 name: capsule of medial geniculate body alt_id: UBERON:NIF_GrossAnatomy_birnlex_1214-FMA_62049 synonym: "capsula corporis geniculati medialis" EXACT [NIF_GrossAnatomy:birnlex_1214] synonym: "medial geniculate body capsule" EXACT [FMA:62049] xref: FMA:62049 xref: NIF_GrossAnatomy:birnlex_1214 is_a: UBERON:0002316 ! white matter is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus is_a: UBERON:0003931 ! implied link automatically realized ! diencephalic white matter relationship: part_of UBERON:0001927 ! medial geniculate body [Term] id: UBERON:0002628 name: tail of caudate nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1215-FMA_61854 synonym: "caudate nuclear tail" EXACT [FMA:61854] xref: EMAPA:18548 xref: FMA:61854 xref: NIF_GrossAnatomy:birnlex_1215 xref: SCTID:279299004 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001873 ! caudate nucleus [Term] id: UBERON:0002629 name: triangular part of inferior frontal gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1216-FMA_61980 synonym: "pars triangularis gyri frontalis inferioris" EXACT [NIF_GrossAnatomy:birnlex_1216] xref: FMA:61980 xref: ncithesaurus:Triangular_Part_of_the_Inferior_Frontal_Gyrus xref: NIF_GrossAnatomy:birnlex_1216 is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0002630 name: body of caudate nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1217-FMA_61853 synonym: "caudate nuclear body" EXACT [FMA:61853] synonym: "corpus (caudatus)" EXACT [FMA:61853] xref: FMA:61853 xref: NIF_GrossAnatomy:birnlex_1217 xref: SCTID:314175006 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001873 ! caudate nucleus [Term] id: UBERON:0002631 name: cerebral crus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1218-FMA_72464 def: "The cerebral crus is the anterior portion of the cerebral peduncle which contains the motor tracts, the plural of which is cerebral crura. In some older texts, it is used as a synonym for the entire cerebral peduncle, not just the anterior portion of it. [WP,unvetted]." [Wikipedia:Cerebral_crus] subset: uberon_slim synonym: "base of cerebral peduncle" RELATED [BTO:0004677] synonym: "cerebral peduncle (clinical definition)" EXACT [FMA:72464] synonym: "crus cerebri" EXACT [EV:0100243] synonym: "crus cerebri" RELATED [BTO:0004677] xref: BTO:0004677 xref: EV:0100243 xref: FMA:72464 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/da/Cn3nucleus.png/200px-Cn3nucleus.png xref: ncithesaurus:Crus_Cerebri xref: NIF_GrossAnatomy:birnlex_1218 is_a: UBERON:0002316 ! white matter relationship: part_of UBERON:0002623 {source="BTO"} ! cerebral peduncle [Term] id: UBERON:0002632 name: medial part of medial mammillary nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1220-FMA_62345 synonym: "medial mammillary nucleus (carpenter)" EXACT [] synonym: "medial mammillary nucleus, medial part" EXACT [FMA:62345] synonym: "medial mammillary nucleus, median part" EXACT [FMA:62345] synonym: "medial subdivision of medial mammillary nucleus" EXACT [FMA:62345] xref: ABA:Mmme xref: FMA:62345 xref: NIF_GrossAnatomy:birnlex_1220 is_a: UBERON:0002020 ! gray matter of neuraxis [Term] id: UBERON:0002633 name: motor nucleus of trigeminal nerve alt_id: UBERON:NIF_GrossAnatomy_birnlex_1222-FMA_54562 def: "The trigeminal motor nucleus contains motor neurons that innervate muscles of the first branchial arch, namely the muscles of mastication, the tensor tympani, tensor veli palatini, mylohyoid, and anterior belly of the digastric." [Wikipedia:Trigeminal_motor_nucleus] comment: note this in ZFA this is part of the medulla; pons is a dubious structure for zebrafish subset: vertebrate_core synonym: "motor nucleus of cranial nerve v" EXACT [] synonym: "motor nucleus of trigeminal nerve" EXACT [FMA:54562] synonym: "motor nucleus V" EXACT [ZFA:0001365] synonym: "motor trigeminal nucleus" EXACT [BTO:0001075] synonym: "nucleus motorius nervi trigemini" EXACT [FMA:54562, FMA:TA] synonym: "nV" EXACT [ZFA:0001365] synonym: "trigeminal motor nucleus" EXACT [ZFA:0001365] synonym: "trigeminal V motor nucleus" EXACT [MA:0001029] xref: ABA:V xref: BM:Vm xref: BTO:0001075 xref: EV:0100273 xref: FMA:54562 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray696.png/200px-Gray696.png xref: MA:0001029 xref: ncithesaurus:Motor_Nucleus_of_the_Trigeminal_Nerve xref: NIF_GrossAnatomy:birnlex_1222 xref: OG:0001355 xref: SCTID:38390003 xref: ZFA:0001365 is_a: UBERON:0000126 {source="FMA"} ! cranial nerve nucleus is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002925 ! implied link automatically realized ! trigeminal nucleus is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter is_a: UBERON:0006331 ! implied link automatically realized ! brainstem nucleus is_a: UBERON:0009662 ! implied link automatically realized ! hindbrain nucleus relationship: part_of UBERON:0000988 {source="ABA"} ! pons relationship: part_of UBERON:0002925 {source="MA"} ! trigeminal nucleus relationship: part_of UBERON:0003023 {source="NIF"} ! pontine tegmentum relationship: spatially_disjoint_from UBERON:0002143 {source="ABA"} ! dorsal tegmental nucleus relationship: spatially_disjoint_from UBERON:0002147 {source="ABA"} ! reticulotegmental nucleus relationship: spatially_disjoint_from UBERON:0002149 {source="ABA"} ! superior salivatory nucleus relationship: spatially_disjoint_from UBERON:0002151 {source="ABA"} ! pontine nuclear group relationship: spatially_disjoint_from UBERON:0002682 {source="ABA"} ! abducens nucleus relationship: spatially_disjoint_from UBERON:0002963 {source="ABA"} ! caudal pontine reticular nucleus relationship: spatially_disjoint_from UBERON:0002968 {source="ABA"} ! central gray substance of pons relationship: spatially_disjoint_from UBERON:0003011 {source="ABA"} ! facial motor nucleus relationship: spatially_disjoint_from UBERON:0007632 {source="ABA"} ! barrington's nucleus [Term] id: UBERON:0002634 name: anterior nucleus of hypothalamus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1226-FMA_62319 def: "The Anterior hypothalamic nucleus is a nucleus of the hypothalamus. Its function is thermoregulation (the maintenance of body temperature between certain parameters) of the body. [WP,unvetted]." [Wikipedia:Anterior_hypothalamic_nucleus] subset: uberon_slim synonym: "anterior hypothalamic area" EXACT [FMA:62319] synonym: "anterior hypothalamic nucleus" EXACT [FMA:62319] synonym: "area hypothalamica rostralis" EXACT [FMA:62319, FMA:TA] synonym: "fundamental gray substance" EXACT [FMA:62319] synonym: "nucleus anterior hypothalami" RELATED [BTO:0002450] synonym: "parvocellular nucleus of hypothalamus" EXACT [FMA:62319] xref: ABA:AHN xref: BM:Die-Hy-HAA xref: BTO:0002450 xref: EV:0100231 xref: FMA:62319 xref: GAID:642 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/HypothalamicNuclei.PNG/200px-HypothalamicNuclei.PNG xref: MESH:A.08.186.211.730.385.357.342.063 xref: NIF_GrossAnatomy:birnlex_1226 xref: SCTID:369133009 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter is_a: UBERON:0007251 ! implied link automatically realized ! preoptic nucleus relationship: part_of UBERON:0001928 ! preoptic area relationship: spatially_disjoint_from UBERON:0001935 {source="ABA"} ! ventromedial nucleus of hypothalamus relationship: spatially_disjoint_from UBERON:0002035 {source="ABA"} ! medial preoptic nucleus relationship: spatially_disjoint_from UBERON:0002206 {source="ABA"} ! mammillary body relationship: spatially_disjoint_from UBERON:0002706 {source="ABA"} ! posterior nucleus of hypothalamus [Term] id: UBERON:0002635 name: regional part of midbrain tegmentum alt_id: UBERON:NIF_GrossAnatomy_birnlex_1227-FMA_62399 synonym: "midbrain tegmentum segment" EXACT [FMA:62399] synonym: "segment of midbrain tegmentum" EXACT [NIF_GrossAnatomy:birnlex_1227] xref: FMA:62399 xref: NIF_GrossAnatomy:birnlex_1227 is_a: UBERON:0002950 ! regional part of midbrain [Term] id: UBERON:0002636 name: lateral pulvinar nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1228-FMA_62181 synonym: "lateral pulvinar nucleus of thalamus" EXACT [FMA:62181] synonym: "nucleus pulvinaris lateralis" EXACT [NIF_GrossAnatomy:birnlex_1228] synonym: "nucleus pulvinaris lateralis (hassler)" EXACT [NIF_GrossAnatomy:birnlex_1228] synonym: "nucleus pulvinaris lateralis thalami" EXACT [NIF_GrossAnatomy:birnlex_1228] synonym: "nucleus pulvinaris thalami, pars lateralis" EXACT [NIF_GrossAnatomy:birnlex_1228] xref: BM:Die-Th-Pl-Pll xref: FMA:62181 xref: NIF_GrossAnatomy:birnlex_1228 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter [Term] id: UBERON:0002637 name: ventral anterior nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1232-FMA_62184 def: "The ventral anterior nucleus is a nucleus of the thalamus. [WP,unvetted]." [Wikipedia:Ventral_anterior_nucleus] subset: uberon_slim synonym: "nucleus lateropolaris" EXACT [NIF_GrossAnatomy:birnlex_1232] synonym: "nucleus ventralis anterior" EXACT [NIF_GrossAnatomy:birnlex_1232] synonym: "nucleus ventralis anterior thalami" EXACT [NIF_GrossAnatomy:birnlex_1232] synonym: "nucleus ventralis thalami anterior" EXACT [NIF_GrossAnatomy:birnlex_1232] synonym: "ventral anterior nucleus of thalamus" EXACT [FMA:62184] synonym: "ventral anterior thalamic nucleus" EXACT [FMA:62184] synonym: "ventroanterior nucleus of the thalamus" EXACT [] synonym: "ventroanterior thalamic nucleus" EXACT [NIF_GrossAnatomy:birnlex_1232] xref: BM:Die-Th-VA xref: BTO:0002468 xref: EV:0100199 xref: FMA:62184 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/ThalamicNuclei.png/200px-ThalamicNuclei.png xref: ncithesaurus:Ventroanterior_Nucleus_of_the_Thalamus xref: NIF_GrossAnatomy:birnlex_1232 xref: SCTID:279131008 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002638 name: medial pulvinar nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1233-FMA_62182 synonym: "nucleus pulvinaris medialis" EXACT [NIF_GrossAnatomy:birnlex_1233] synonym: "nucleus pulvinaris medialis thalami" EXACT [NIF_GrossAnatomy:birnlex_1233] synonym: "nucleus pulvinaris thalami, pars medialis" EXACT [NIF_GrossAnatomy:birnlex_1233] xref: BM:Die-Th-Pl-Plm xref: FMA:62182 xref: NIF_GrossAnatomy:birnlex_1233 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter [Term] id: UBERON:0002639 name: midbrain reticular formation alt_id: UBERON:NIF_GrossAnatomy_birnlex_1235-FMA_62406 synonym: "reticular formation of midbrain" EXACT [FMA:62406] synonym: "tegmental reticular formation" EXACT [FMA:62406] xref: BM:MB-MBRF xref: FMA:62406 xref: NIF_GrossAnatomy:birnlex_1235 xref: SCTID:369234009 is_a: UBERON:0002275 ! reticular formation relationship: part_of UBERON:0001891 intersection_of: UBERON:0002275 ! reticular formation intersection_of: part_of UBERON:0001891 ! midbrain relationship: has_part UBERON:0002142 ! pedunculopontine tegmental nucleus relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0002640 name: cuneocerebellar tract alt_id: UBERON:NIF_GrossAnatomy_birnlex_1238-FMA_72637 def: "The posterior external arcuate fibers (dorsal external arcuate fibers) take origin in the gracile and cuneate nuclei; they pass to the inferior peduncle of the same side. It is uncertain whether fibers are continued directly from the gracile and cuneate fasciculi into the inferior peduncle. The term 'cuneocerebellar tract' is sometimes used to collectively refer to the posterior external arcuate fibers. [WP,unvetted]." [Wikipedia:Cuneocerebellar_tract] subset: uberon_slim synonym: "cuneocerebellar fibers" EXACT [NIF_GrossAnatomy:birnlex_1238] xref: FMA:72637 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/98/Gray699.png/200px-Gray699.png xref: NIF_GrossAnatomy:birnlex_1238 is_a: UBERON:0002316 ! white matter is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002641 name: oral pulvinar nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1239-FMA_62180 synonym: "anterior pulvinar nucleus" EXACT [FMA:62180] synonym: "nucleus pulvinaris anterior" EXACT [FMA:62180, FMA:TA] synonym: "nucleus pulvinaris oralis" EXACT [NIF_GrossAnatomy:birnlex_1239] synonym: "nucleus pulvinaris oralis thalami" EXACT [NIF_GrossAnatomy:birnlex_1239] synonym: "oral nuclear group of pulvinar" EXACT [FMA:62180] synonym: "oral part of pulvinar" EXACT [FMA:62180] synonym: "oral portion of pulvinar" EXACT [FMA:62180] xref: BM:Die-Th-Pl-Pla xref: FMA:62180 xref: NIF_GrossAnatomy:birnlex_1239 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter [Term] id: UBERON:0002642 name: cuneate fasciculus of medulla alt_id: UBERON:NIF_GrossAnatomy_birnlex_1242-FMA_72623 comment: TODO - change definition to be the *whole* of the CF in the MO. isa parentage to fasciculus of brain should be inferred xref: FMA:72623 xref: NIF_GrossAnatomy:birnlex_1242 is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0005832 ! implied link automatically realized ! cuneate fasciculus is_a: UBERON:0005838 ! fasciculus of brain relationship: part_of UBERON:0001896 intersection_of: UBERON:0005832 ! cuneate fasciculus intersection_of: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002643 name: decussation of medial lemniscus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1245-FMA_72622 def: "The sensory decussation or decussation of the lemniscus is a decussation or cross over of axons from the gracile nucleus and cuneate nucleus. The fibres of this decussation are called the internal arcuate fibres and are found at the superior aspect of the closed medulla superior to the motor decussation. It is part of the second neuron in the Posterior column-medial lemniscus pathway. [WP,unvetted]." [Wikipedia:Sensory_decussation] subset: uberon_slim synonym: "decussation of lemnisci" EXACT [FMA:72622] synonym: "decussation of lemniscus" EXACT [FMA:72622] synonym: "decussation of medial lemnisci" EXACT [FMA:72622] synonym: "medial lemniscus decussation" EXACT [FMA:72622] synonym: "medullary sensory decussation" EXACT [FMA:72622] synonym: "sensory decussation" EXACT [FMA:72622] xref: BM:Me-LMX xref: FMA:72622 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Gray759.png/200px-Gray759.png xref: NIF_GrossAnatomy:birnlex_1245 is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter is_a: UBERON:0007418 ! decussation of neuraxis relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002644 name: intermediate orbital gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1247-FMA_80183 xref: FMA:80183 xref: NIF_GrossAnatomy:birnlex_1247 is_a: UBERON:0007193 ! orbital gyrus [Term] id: UBERON:0002645 name: densocellular part of medial dorsal nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1255-FMA_62163 synonym: "nucleus medialis dorsalis paralamellaris (hassler)" EXACT [NIF_GrossAnatomy:birnlex_1255] synonym: "nucleus medialis dorsalis, pars densocellularis" EXACT [NIF_GrossAnatomy:birnlex_1255] xref: FMA:62163 xref: NIF_GrossAnatomy:birnlex_1255 is_a: UBERON:0002020 ! gray matter of neuraxis [Term] id: UBERON:0002646 name: dorsal longitudinal fasciculus of medulla alt_id: UBERON:NIF_GrossAnatomy_birnlex_1257-FMA_72617 def: "A dorsal longitudinal fasciculus that is part of a medulla [Obol]." [OBOL:automatic] synonym: "bundle of Schutz of medulla" EXACT [OBOL:automatic] synonym: "fasciculus of Schutz of medulla" EXACT [OBOL:automatic] synonym: "medulla bundle of Schutz" EXACT [OBOL:automatic] synonym: "medulla dorsal longitudinal fasciculus" EXACT [OBOL:automatic] synonym: "medulla fasciculus of Schutz" EXACT [OBOL:automatic] synonym: "medulla posterior longitudinal fasciculus" EXACT [OBOL:automatic] synonym: "posterior longitudinal fasciculus of medulla" EXACT [OBOL:automatic] xref: FMA:72617 xref: NIF_GrossAnatomy:birnlex_1257 is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0003045 ! dorsal longitudinal fasciculus relationship: part_of UBERON:0000958 intersection_of: UBERON:0003045 ! dorsal longitudinal fasciculus intersection_of: part_of UBERON:0000958 ! medulla relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002647 name: magnocellular part of medial dorsal nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1262-FMA_62161 synonym: "dorsomedial thalamic nucleus, magnocellular part" EXACT [FMA:62161] synonym: "magnocellular mediodorsal nucleus" EXACT [FMA:62161] synonym: "magnocellular nucleus of medial dorsal nucleus of thalamus" EXACT [FMA:62161] synonym: "magnocellular part of dorsomedial nucleus" EXACT [FMA:62161] synonym: "magnocellular part of mediodorsal nucleus" EXACT [NIF_GrossAnatomy:birnlex_1262] synonym: "nucleus medialis dorsalis, pars magnocellularis" EXACT [NIF_GrossAnatomy:birnlex_1262] synonym: "nucleus medialis fibrosus" EXACT [NIF_GrossAnatomy:birnlex_1262] synonym: "nucleus medialis fibrosus (hassler)" EXACT [NIF_GrossAnatomy:birnlex_1262] synonym: "pars magnocellularis nuclei mediodorsalis thalami" EXACT [FMA:62161, FMA:TA] xref: FMA:62161 xref: NIF_GrossAnatomy:birnlex_1262 is_a: UBERON:0002020 ! gray matter of neuraxis [Term] id: UBERON:0002648 name: anterior median eminence alt_id: UBERON:NIF_GrossAnatomy_birnlex_1264-FMA_74870 xref: FMA:74870 xref: NIF_GrossAnatomy:birnlex_1264 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0002649 name: dorsolateral fasciculus of medulla alt_id: UBERON:NIF_GrossAnatomy_birnlex_1267-FMA_72616 def: "." [Wikipedia:Lissauer's_tract] subset: uberon_slim synonym: "dorsolateral tract" EXACT [FMA:72616] synonym: "lissauer's tract" EXACT [FMA:72616] synonym: "posterolateral fasciculus" EXACT [FMA:72616] synonym: "posterolateral tract" EXACT [FMA:72616] synonym: "tract of lissauer" EXACT [] synonym: "tractus posterolateralis" EXACT [FMA:72616, FMA:TA] synonym: "zone of lissauer" EXACT [] xref: FMA:72616 xref: ncithesaurus:Tract_of_Lissauer xref: NIF_GrossAnatomy:birnlex_1267 xref: SCTID:369287009 is_a: UBERON:0002316 ! white matter is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002650 name: paralaminar part of medial dorsal nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1276-FMA_62160 synonym: "dorsomedial thalamic nucleus, paralaminar part" EXACT [FMA:62160] synonym: "mediodorsal thalamic nucleus, paralaminar part" EXACT [NIF_GrossAnatomy:birnlex_1276] synonym: "nucleus medialis dorsalis caudalis (hassler)" EXACT [NIF_GrossAnatomy:birnlex_1276] synonym: "nucleus medialis dorsalis thalami, pars multiformis" EXACT [NIF_GrossAnatomy:birnlex_1276] synonym: "nucleus medialis dorsalis, pars multiformis" EXACT [NIF_GrossAnatomy:birnlex_1276] synonym: "nucleus medialis dorsalis, pars paralaminaris" EXACT [NIF_GrossAnatomy:birnlex_1276] synonym: "paralaminar part of dorsomedial nucleus" EXACT [FMA:62160] synonym: "paralaminar part of medial dorsal nucleus of thalamus" EXACT [FMA:62160] synonym: "pars paralaminaris nuclei mediodorsalis thalami" EXACT [FMA:62160, FMA:TA] synonym: "pars paralaminaris of medial dorsal nucleus of thalamus" EXACT [FMA:62160] synonym: "ventral mediodorsal nucleus" EXACT [FMA:62160] xref: FMA:62160 xref: NIF_GrossAnatomy:birnlex_1276 is_a: UBERON:0002020 ! gray matter of neuraxis [Term] id: UBERON:0002651 name: anterior horn of lateral ventricle alt_id: UBERON:NIF_GrossAnatomy_birnlex_1279-FMA_74520 def: "The anterior cornu (frontal horn, anterior horn; precornu) of the lateral ventricle passes forward and lateralward, with a slight inclination downward, from the interventricular foramen into the frontal lobe, curving around the anterior end of the caudate nucleus. Its floor is formed by the upper surface of the reflected portion of the corpus callosum, the rostrum. It is bounded medially by the anterior portion of the septum pellucidum, and laterally by the head of the caudate nucleus. Its apex reaches the posterior surface of the genu of the corpus callosum. [WP,unvetted]." [Wikipedia:Anterior_horn_of_lateral_ventricle] subset: uberon_slim synonym: "anterior horn of lateral ventricle" EXACT [FMA:74520] synonym: "cornu anterius ventriculi lateralis" EXACT [FMA:74520, FMA:TA] synonym: "frontal horn of lateral ventricle" EXACT [FMA:74520] xref: FMA:74520 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b7/Gray735.png/200px-Gray735.png xref: ncithesaurus:Frontal_Horn_of_the_Lateral_Ventricle xref: NIF_GrossAnatomy:birnlex_1279 xref: SCTID:279247001 is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon is_a: UBERON:0004086 ! brain ventricle relationship: part_of UBERON:0002285 ! lateral ventricle [Term] id: UBERON:0002652 name: posterior median eminence alt_id: UBERON:NIF_GrossAnatomy_birnlex_1280-FMA_74875 xref: FMA:74875 xref: NIF_GrossAnatomy:birnlex_1280 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0002653 name: gracile fasciculus of medulla alt_id: UBERON:NIF_GrossAnatomy_birnlex_1282-FMA_72624 synonym: "column of goll" EXACT [] synonym: "fasciculus of goll" EXACT [] synonym: "goll's tract" EXACT [FMA:72624] synonym: "gracile fascicle (gall)" EXACT [NIF_GrossAnatomy:birnlex_1282] synonym: "gracile fascicle of medulla" EXACT [FMA:72624] synonym: "medulla segment of fasciculus gracilis" EXACT [FMA:72624] synonym: "medulla segment of gracile fasciculus" EXACT [FMA:72624] synonym: "tract of gall" EXACT [] xref: FMA:72624 xref: NIF_GrossAnatomy:birnlex_1282 is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0005821 ! implied link automatically realized ! gracile fasciculus is_a: UBERON:0005838 ! implied link automatically realized ! fasciculus of brain relationship: part_of UBERON:0001896 intersection_of: UBERON:0005821 ! gracile fasciculus intersection_of: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002654 name: parvicellular part of medial dorsal nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1283-FMA_62162 synonym: "dorsomedial thalamic nucleus, parvicellular part" EXACT [FMA:62162] synonym: "lateral mediodorsal nucleus" EXACT [FMA:62162] synonym: "lateral nucleus of medial dorsal nucleus of thalamus" EXACT [FMA:62162] synonym: "mediodorsal thalamic nucleus, pars fasciculosa" EXACT [NIF_GrossAnatomy:birnlex_1283] synonym: "nucleus medialis dorsalis fasciculosis (hassler)" EXACT [NIF_GrossAnatomy:birnlex_1283] synonym: "nucleus medialis dorsalis nucleus fasciculosis (hassler)" EXACT [NIF_GrossAnatomy:birnlex_1283] synonym: "nucleus medialis dorsalis, pars parvicellularis" EXACT [NIF_GrossAnatomy:birnlex_1283] synonym: "pars parvocellularis lateralis nuclei mediodorsalis thalami" EXACT [FMA:62162, FMA:TA] synonym: "pars principalis nuclei ventralis anterior thalami" EXACT [FMA:62162, FMA:TA] synonym: "parvicellular part of dorsomedial nucleus" EXACT [FMA:62162] synonym: "parvocellular nucleus of medial dorsal nucleus of thalamus" EXACT [FMA:62162] synonym: "principal division of ventral anterior nucleus of thalamus" EXACT [FMA:62162] xref: FMA:62162 xref: NIF_GrossAnatomy:birnlex_1283 is_a: UBERON:0002020 ! gray matter of neuraxis [Term] id: UBERON:0002655 name: body of lateral ventricle alt_id: UBERON:NIF_GrossAnatomy_birnlex_1287-FMA_83703 def: "The body of lateral ventricle (cella) extends from the interventricular foramen to the splenium of the corpus callosum. It is an irregularly curved cavity, triangular on transverse section, with a roof, a floor, and a medial wall. The roof is formed by the under surface of the corpus callosum; the floor by the following parts, enumerated in their order of position, from before backward: the caudate nucleus of the corpus striatum, the stria terminalis and the terminal vein, the lateral portion of the upper surface of the thalamus, the choroid plexus, and the lateral part of the fornix; the medial wall is the posterior part of the septum pellucidum, which separates it from the opposite ventricle. [WP,unvetted]." [Wikipedia:Body_of_lateral_ventricle] subset: uberon_slim synonym: "central part of lateral ventricle" EXACT [FMA:83703] synonym: "lateral ventricular body" EXACT [FMA:83703] synonym: "pars centralis ventriculi lateralis" EXACT [FMA:83703, FMA:TA] xref: FMA:83703 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b7/Gray735.png/200px-Gray735.png xref: ncithesaurus:Body_of_the_Lateral_Ventricle xref: NIF_GrossAnatomy:birnlex_1287 xref: SCTID:279246005 is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon is_a: UBERON:0004086 ! brain ventricle relationship: part_of UBERON:0002285 ! lateral ventricle [Term] id: UBERON:0002656 name: periamygdaloid area alt_id: UBERON:NIF_GrossAnatomy_birnlex_1291-FMA_62485 synonym: "para-amygdaloid cortex" EXACT [FMA:62485] synonym: "periamygdaloid cortex" EXACT [FMA:62485] synonym: "periamygdaloid region" EXACT [FMA:62485] synonym: "semilunar gyrus" EXACT [FMA:62485] synonym: "ventral cortical nucleus of amygdala" EXACT [FMA:62485] xref: BM:Tel-Cx-PAM xref: FMA:62485 xref: NIF_GrossAnatomy:birnlex_1291 is_a: UBERON:0002020 ! gray matter of neuraxis [Term] id: UBERON:0002657 name: posterior parahippocampal gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1295-FMA_67966 synonym: "parahippocampal gyrus (amaral)" EXACT [] synonym: "parahippocampal gyrus (insausti)" EXACT [NIF_GrossAnatomy:birnlex_1295] xref: FMA:67966 xref: NIF_GrossAnatomy:birnlex_1295 is_a: UBERON:0000200 ! gyrus [Term] id: UBERON:0002658 name: medial lemniscus of midbrain alt_id: UBERON:NIF_GrossAnatomy_birnlex_1296-FMA_72461 def: "A medial lemniscus that is part of a midbrain [Obol]." [OBOL:automatic] synonym: "midbrain medial lemniscus" EXACT [OBOL:automatic] xref: FMA:72461 xref: NIF_GrossAnatomy:birnlex_1296 is_a: UBERON:0003002 ! medial lemniscus relationship: part_of UBERON:0001891 intersection_of: UBERON:0003002 ! medial lemniscus intersection_of: part_of UBERON:0001891 ! midbrain relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0002659 name: superior medullary velum alt_id: UBERON:NIF_GrossAnatomy_birnlex_1300-FMA_74508 def: "The superior medullary velum (anterior medullary velum, valve of Vieussens) is a thin, transparent of white substance, which stretches between the superior cerebellar peduncles; on the dorsal surface of its lower half the folia and lingula are prolonged. It forms, together with the superior cerebellar peduncle, the roof of the upper part of the fourth ventricle; it is narrow above, where it passes beneath the inferior colliculi, and broader below, where it is continuous with the white substance of the superior vermis. A slightly elevated ridge, the fraenulum veli, descends upon its upper part from between the inferior colliculi, and on either side of this the trochlear nerve emerges. Blood is supplied by branches from the superior cerebellar artery. [WP,unvetted]." [Wikipedia:Superior_medullary_velum] subset: uberon_slim synonym: "anterior medullary velum" EXACT [FMA:74508] xref: FMA:74508 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9b/Gray701.png/200px-Gray701.png xref: NIF_GrossAnatomy:birnlex_1300 xref: SCTID:369269006 is_a: UBERON:0003035 ! regional part of cerebellar white matter [Term] id: UBERON:0002660 name: medial longitudinal fasciculus of midbrain alt_id: UBERON:NIF_GrossAnatomy_birnlex_1302-FMA_72454 def: "A medial longitudinal fasciculus that is part of a midbrain [Obol]." [OBOL:automatic] synonym: "midbrain medial longitudinal fasciculus" EXACT [OBOL:automatic] xref: FMA:72454 xref: NIF_GrossAnatomy:birnlex_1302 is_a: UBERON:0002309 ! medial longitudinal fasciculus relationship: part_of UBERON:0001891 intersection_of: UBERON:0002309 ! medial longitudinal fasciculus intersection_of: part_of UBERON:0001891 ! midbrain relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0002661 name: superior frontal gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1303-FMA_61857 def: "The superior frontal gyrus makes up about one-third of the frontal lobe of the human brain. It is bounded laterally by the superior frontal sulcus. The superior frontal gyrus, like the inferior frontal gyrus and the middle frontal gyrus, is more of a region than a true gyrus. [WP,unvetted]." [Wikipedia:Superior_frontal_gyrus] subset: uberon_slim synonym: "marginal gyrus" EXACT [FMA:61857] synonym: "superior frontal convolution" EXACT [FMA:61857] xref: BTO:0004836 xref: EFO:0001991 xref: FMA:61857 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/50/Superior_frontal_gyrus.png/200px-Superior_frontal_gyrus.png xref: ncithesaurus:Superior_Frontal_Convolution xref: NIF_GrossAnatomy:birnlex_1303 xref: SCTID:279166005 is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0001870 ! frontal cortex [Term] id: UBERON:0002662 name: medial pes lemniscus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1310-FMA_72460 synonym: "superficial pes lemniscus" EXACT [FMA:72460] xref: FMA:72460 xref: NIF_GrossAnatomy:birnlex_1310 is_a: UBERON:0002316 ! white matter is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0002663 name: septal nuclear complex alt_id: UBERON:NIF_GrossAnatomy_birnlex_1313-FMA_61845 def: "The septal nuclei are structures in the middle anteroventral cerebrum that are composed of medium-size neurons grouped into medial, lateral, and posterior groups. The septal nuclei receive reciprocal connections from the olfactory bulb, hippocampus, amygdala, hypothalamus, midbrain, habenula, cingulate gyrus, and thalamus. The septal nuclei play a role in reward and reinforcement along with the nucleus accumbens. In the 1950s, Olds & Milner showed that rats with electrodes implanted in this area will self-stimulate repeatedly in order to experience a euphoric feeling (i.e. press a bar to receive electrical current that will stimulate the neurons). [WP,unvetted]." [Wikipedia:Septal_nuclei] comment: TODO - nucleus vs nuclear complex subset: uberon_slim synonym: "parolfactory nuclei" EXACT [FMA:61845] synonym: "septal nuclei" EXACT [FMA:61845] synonym: "septal nucleus" EXACT [MA:0002978] xref: FMA:61845 xref: GAID:637 xref: MA:0002978 xref: MESH:A.08.186.211.577.750.800 xref: NIF_GrossAnatomy:birnlex_1313 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0000446 ! septum of telencephalon [Term] id: UBERON:0002664 name: lateral part of medial mammillary nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1314-FMA_62346 synonym: "intercalated mammillary nucleus" EXACT [FMA:62346] synonym: "intermediate mammillary nucleus" EXACT [FMA:62346] synonym: "lateral mammillary nucleus (gagel)" EXACT [] synonym: "lateral subdivision of medial mammillary nucleus" EXACT [FMA:62346] synonym: "medial mammillary nucleus, lateral part" EXACT [FMA:62346] xref: FMA:62346 xref: NIF_GrossAnatomy:birnlex_1314 is_a: UBERON:0002020 ! gray matter of neuraxis [Term] id: UBERON:0002665 name: supracallosal gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1316-FMA_61920 def: "The supracallosal gyrus (indusium griseum; gyrus epicallosus) consists of a thin layer of grey matter in contact with the dorsal surface of the corpus callosum and continuous laterally with the grey matter of the cingulate gyrus. It contains two longitudinally directed strands of fibers termed respectively the medial and lateral longitudinal striae. The supracallosal gyrus is prolonged around the splenium of the corpus callosum as a delicate lamina, the fasciola cinerea, which is continuous below with the fascia dentata hippocampi. [WP,unvetted]." [Wikipedia:Supracallosal_gyrus] subset: uberon_slim synonym: "supracommissural hippocampal rudiment" EXACT [FMA:61920] synonym: "supracommissural hippocampus" EXACT [FMA:61920] xref: BTO:0003738 xref: FMA:61920 xref: NIF_GrossAnatomy:birnlex_1316 xref: SCTID:369231001 is_a: UBERON:0000200 ! gyrus [Term] id: UBERON:0002666 name: mesencephalic tract of trigeminal nerve alt_id: UBERON:NIF_GrossAnatomy_birnlex_1318-FMA_72489 synonym: "mesencephalic root of v" EXACT [] synonym: "mesencephalic trigeminal tract" EXACT [FMA:72489] xref: FMA:72489 xref: NIF_GrossAnatomy:birnlex_1318 xref: SCTID:369263007 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0002667 name: lateral septal nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1321-FMA_61878 synonym: "lateral parolfactory nucleus" EXACT [FMA:61878] synonym: "lateral septal nucleus (cajal)" EXACT [NIF_GrossAnatomy:birnlex_1321] synonym: "lateral septum" EXACT [NIF_GrossAnatomy:birnlex_1321] synonym: "lateral septum nucleus" EXACT [NIF_GrossAnatomy:birnlex_1321] xref: ABA:LS xref: BM:Tel-Spt-SLN xref: FMA:61878 xref: NIF_GrossAnatomy:birnlex_1321 is_a: UBERON:0002308 ! nucleus of brain relationship: spatially_disjoint_from UBERON:0001878 {source="ABA"} ! septofimbrial nucleus relationship: spatially_disjoint_from UBERON:0007630 {source="ABA"} ! septohippocampal nucleus [Term] id: UBERON:0002668 name: oculomotor nerve fibers alt_id: UBERON:NIF_GrossAnatomy_birnlex_1323-FMA_72457 comment: todo - make subclass of root of cranial nerve synonym: "central part of oculomotor nerve" EXACT [FMA:72457] synonym: "oculomotor nerve fibers" EXACT [FMA:72457] synonym: "root of oculomotor nerve" EXACT [FMA:72457] xref: FMA:72457 xref: NIF_GrossAnatomy:birnlex_1323 is_a: UBERON:0002211 ! nerve root is_a: UBERON:0004732 ! implied link automatically realized ! segmental subdivision of nervous system relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0002669 name: anterior horizontal limb of lateral sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1327-FMA_83760 synonym: "anterior branch of lateral sulcus" EXACT [FMA:83760] synonym: "anterior horizontal limb of lateral fissure" EXACT [FMA:83760] synonym: "anterior horizontal ramus of lateral fissure" EXACT [FMA:83760] synonym: "anterior ramus of lateral cerebral sulcus" EXACT [FMA:83760] synonym: "horizontal limb of lateral fissure" EXACT [FMA:83760] synonym: "horizontal ramus of sylvian fissure" EXACT [] synonym: "ramus anterior sulci lateralis cerebri" EXACT [FMA:83760, FMA:TA] xref: FMA:83760 xref: NIF_GrossAnatomy:birnlex_1327 is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0002670 name: anterior ascending limb of lateral sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1330-FMA_83759 synonym: "anterior ascending limb of lateral fissure" EXACT [FMA:83759] synonym: "anterior ascending ramus of lateral sulcus" EXACT [FMA:83759] synonym: "ascending branch of lateral sulcus" EXACT [FMA:83759] synonym: "ascending ramus of lateral cerebral sulcus" EXACT [FMA:83759] synonym: "ascending ramus of sylvian fissure" EXACT [] synonym: "middle ramus of lateral fissure" EXACT [FMA:83759] synonym: "ramus ascendens sulci lateralis cerebri" EXACT [FMA:83759, FMA:TA] synonym: "superior branch of lateral fissure" EXACT [FMA:83759] xref: FMA:83759 xref: NIF_GrossAnatomy:birnlex_1330 is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0002671 name: pallidotegmental fasciculus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1331-FMA_72458 synonym: "pallidotegmental tract" EXACT [FMA:72458] xref: FMA:72458 xref: NIF_GrossAnatomy:birnlex_1331 is_a: UBERON:0002316 ! white matter is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0002672 name: anterior subcentral sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1332-FMA_83765 xref: FMA:83765 xref: NIF_GrossAnatomy:birnlex_1332 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002673 name: vestibular nuclear complex alt_id: UBERON:NIF_GrossAnatomy_birnlex_1337-FMA_72239 def: "The vestibular nuclei are the cranial nuclei for the vestibular nerve. [WP,unvetted]." [Wikipedia:Vestibular_nuclei] comment: In TA they are grouped in both the pons and medulla; WP says the SVN is in the pons, and GO includes VNC development under pons development, but this is not supported by ABA. Todo - check with NIF subset: uberon_slim synonym: "nuclei vestibulares in medulla oblongata" EXACT [FMA:72239, FMA:TA] synonym: "vestibular nuclei" EXACT [FMA:72239] synonym: "vestibular nuclei in medulla oblongata" EXACT [FMA:72239] synonym: "vestibular nucleus" RELATED [GO:0021750] xref: ABA:VNC xref: BM:Me-VS xref: BTO:0004368 xref: EV:0100254 xref: FMA:72239 xref: GAID:602 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Gray691.png/200px-Gray691.png xref: MESH:A.08.186.211.132.810.428.600.800 xref: NIF_GrossAnatomy:birnlex_1337 is_a: UBERON:0000125 ! neural nucleus is_a: UBERON:0007635 ! implied link automatically realized ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 {source="ABA"} ! medulla oblongata relationship: part_of UBERON:0004681 {source="Wikipedia:Vestibular_nuclei"} ! vestibular system relationship: spatially_disjoint_from UBERON:0001719 {source="ABA"} ! nucleus ambiguus relationship: spatially_disjoint_from UBERON:0002127 {source="ABA"} ! inferior olivary complex relationship: spatially_disjoint_from UBERON:0002154 {source="ABA"} ! lateral reticular nucleus relationship: spatially_disjoint_from UBERON:0002155 {source="ABA"} ! gigantocellular nucleus relationship: spatially_disjoint_from UBERON:0002559 {source="ABA"} ! medullary reticular formation relationship: spatially_disjoint_from UBERON:0002870 {source="ABA"} ! dorsal motor nucleus of vagus nerve relationship: spatially_disjoint_from UBERON:0002871 {source="ABA"} ! hypoglossal nucleus relationship: spatially_disjoint_from UBERON:0002872 {source="ABA"} ! inferior salivatory nucleus relationship: spatially_disjoint_from UBERON:0002877 {source="ABA"} ! parasolitary nucleus [Term] id: UBERON:0002675 name: diagonal sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1344-FMA_83758 xref: FMA:83758 xref: NIF_GrossAnatomy:birnlex_1344 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002676 name: ventral supraoptic decussation alt_id: UBERON:NIF_GrossAnatomy_birnlex_1347-FMA_62052 def: "The ventral supraoptic decussation is the crossover point for signals from the left and right eye, en route respectively to the right and left sides of the visual cortex. Occupying the posterior part of the commissure of the optic chiasma is a strand of fibers, the Ventral supraoptic decussation (commissure of Gudden, Gudden's inferior commissure), which is not derived from the optic nerves; it forms a connecting link between the medial geniculate bodies. [WP,unvetted]." [Wikipedia:Ventral_supraoptic_decussation] subset: uberon_slim synonym: "commissura supraoptica ventralis" EXACT [FMA:62052, FMA:TA] synonym: "commissure of gudden" EXACT [] synonym: "gudden commissure" EXACT [FMA:62052] synonym: "gudden's commissure" EXACT [FMA:62052] synonym: "supraoptic commissures, ventral" EXACT [FMA:62052] synonym: "ventral supra-optic commissure" EXACT [FMA:62052] synonym: "ventral supraoptic commissure (of meynert)" EXACT [] synonym: "ventral supraoptic decussation of gudden" EXACT [] synonym: "von Gudden's commissure" EXACT [FMA:62052] xref: FMA:62052 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c0/Gray722.png/200px-Gray722.png xref: NIF_GrossAnatomy:birnlex_1347 is_a: UBERON:0001020 ! commissure [Term] id: UBERON:0002677 name: regional part of medullary raphe nuclear complex alt_id: UBERON:NIF_GrossAnatomy_birnlex_1349-FMA_83951 def: "A regional part of brain that is part of a medullary raphe nuclear complex [Obol]." [OBOL:automatic] synonym: "anatomical structure of brain of medullary raphe nuclear complex" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of raphe nuclei of medulla" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of raphe of medulla oblongata" EXACT [OBOL:automatic] synonym: "biological structure of brain of medullary raphe nuclear complex" EXACT [OBOL:automatic] synonym: "biological structure of brain of raphe nuclei of medulla" EXACT [OBOL:automatic] synonym: "biological structure of brain of raphe of medulla oblongata" EXACT [OBOL:automatic] synonym: "brain anatomical structure of medullary raphe nuclear complex" EXACT [OBOL:automatic] synonym: "brain anatomical structure of raphe nuclei of medulla" EXACT [OBOL:automatic] synonym: "brain anatomical structure of raphe of medulla oblongata" EXACT [OBOL:automatic] synonym: "brain biological structure of medullary raphe nuclear complex" EXACT [OBOL:automatic] synonym: "brain biological structure of raphe nuclei of medulla" EXACT [OBOL:automatic] synonym: "brain biological structure of raphe of medulla oblongata" EXACT [OBOL:automatic] synonym: "medullary raphe nuclear complex anatomical structure of brain" EXACT [OBOL:automatic] synonym: "medullary raphe nuclear complex biological structure of brain" EXACT [OBOL:automatic] synonym: "medullary raphe nuclear complex brain anatomical structure" EXACT [OBOL:automatic] synonym: "medullary raphe nuclear complex brain biological structure" EXACT [OBOL:automatic] synonym: "medullary raphe nuclear complex neuraxis segment" EXACT [OBOL:automatic] synonym: "medullary raphe nuclear complex regional part of brain" EXACT [OBOL:automatic] synonym: "medullary raphe nuclear complex segment" EXACT [FMA:83951] synonym: "medullary raphe nuclear complex segment of brain" EXACT [OBOL:automatic] synonym: "neuraxis segment of medullary raphe nuclear complex" EXACT [OBOL:automatic] synonym: "neuraxis segment of raphe nuclei of medulla" EXACT [OBOL:automatic] synonym: "neuraxis segment of raphe of medulla oblongata" EXACT [OBOL:automatic] synonym: "raphe nuclei of medulla anatomical structure of brain" EXACT [OBOL:automatic] synonym: "raphe nuclei of medulla biological structure of brain" EXACT [OBOL:automatic] synonym: "raphe nuclei of medulla brain anatomical structure" EXACT [OBOL:automatic] synonym: "raphe nuclei of medulla brain biological structure" EXACT [OBOL:automatic] synonym: "raphe nuclei of medulla neuraxis segment" EXACT [OBOL:automatic] synonym: "raphe nuclei of medulla regional part of brain" EXACT [OBOL:automatic] synonym: "raphe nuclei of medulla segment of brain" EXACT [OBOL:automatic] synonym: "raphe of medulla oblongata anatomical structure of brain" EXACT [OBOL:automatic] synonym: "raphe of medulla oblongata biological structure of brain" EXACT [OBOL:automatic] synonym: "raphe of medulla oblongata brain anatomical structure" EXACT [OBOL:automatic] synonym: "raphe of medulla oblongata brain biological structure" EXACT [OBOL:automatic] synonym: "raphe of medulla oblongata neuraxis segment" EXACT [OBOL:automatic] synonym: "raphe of medulla oblongata regional part of brain" EXACT [OBOL:automatic] synonym: "raphe of medulla oblongata segment of brain" EXACT [OBOL:automatic] synonym: "regional part of brain of medullary raphe nuclear complex" EXACT [OBOL:automatic] synonym: "regional part of brain of raphe nuclei of medulla" EXACT [OBOL:automatic] synonym: "regional part of brain of raphe of medulla oblongata" EXACT [OBOL:automatic] synonym: "segment of brain of medullary raphe nuclear complex" EXACT [OBOL:automatic] synonym: "segment of brain of raphe nuclei of medulla" EXACT [OBOL:automatic] synonym: "segment of brain of raphe of medulla oblongata" EXACT [OBOL:automatic] synonym: "segment of medullary raphe nuclear complex" EXACT [NIF_GrossAnatomy:birnlex_1349] xref: FMA:83951 xref: NIF_GrossAnatomy:birnlex_1349 is_a: UBERON:0002678 ! regional part of medulla oblongata relationship: part_of UBERON:0002692 intersection_of: UBERON:0002616 ! regional part of brain intersection_of: part_of UBERON:0002692 ! medullary raphe nuclear complex [Term] id: UBERON:0002678 name: regional part of medulla oblongata alt_id: UBERON:NIF_GrossAnatomy_birnlex_1355-FMA_71011 def: "A regional part of brain that is part of a medulla oblongata [Obol]." [OBOL:automatic] synonym: "anatomical structure of brain of bulb" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of medulla oblongata" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of medulla oblonmgata" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of metepencephalon" EXACT [OBOL:automatic] synonym: "biological structure of brain of bulb" EXACT [OBOL:automatic] synonym: "biological structure of brain of medulla oblongata" EXACT [OBOL:automatic] synonym: "biological structure of brain of medulla oblonmgata" EXACT [OBOL:automatic] synonym: "biological structure of brain of metepencephalon" EXACT [OBOL:automatic] synonym: "brain anatomical structure of bulb" EXACT [OBOL:automatic] synonym: "brain anatomical structure of medulla oblongata" EXACT [OBOL:automatic] synonym: "brain anatomical structure of medulla oblonmgata" EXACT [OBOL:automatic] synonym: "brain anatomical structure of metepencephalon" EXACT [OBOL:automatic] synonym: "brain biological structure of bulb" EXACT [OBOL:automatic] synonym: "brain biological structure of medulla oblongata" EXACT [OBOL:automatic] synonym: "brain biological structure of medulla oblonmgata" EXACT [OBOL:automatic] synonym: "brain biological structure of metepencephalon" EXACT [OBOL:automatic] synonym: "bulb anatomical structure of brain" EXACT [OBOL:automatic] synonym: "bulb biological structure of brain" EXACT [OBOL:automatic] synonym: "bulb brain anatomical structure" EXACT [OBOL:automatic] synonym: "bulb brain biological structure" EXACT [OBOL:automatic] synonym: "bulb neuraxis segment" EXACT [OBOL:automatic] synonym: "bulb regional part of brain" EXACT [OBOL:automatic] synonym: "bulb segment of brain" EXACT [OBOL:automatic] synonym: "medulla oblongata anatomical structure of brain" EXACT [OBOL:automatic] synonym: "medulla oblongata biological structure of brain" EXACT [OBOL:automatic] synonym: "medulla oblongata brain anatomical structure" EXACT [OBOL:automatic] synonym: "medulla oblongata brain biological structure" EXACT [OBOL:automatic] synonym: "medulla oblongata neuraxis segment" EXACT [OBOL:automatic] synonym: "medulla oblongata regional part of brain" EXACT [OBOL:automatic] synonym: "medulla oblongata segment of brain" EXACT [OBOL:automatic] synonym: "medulla oblonmgata anatomical structure of brain" EXACT [OBOL:automatic] synonym: "medulla oblonmgata biological structure of brain" EXACT [OBOL:automatic] synonym: "medulla oblonmgata brain anatomical structure" EXACT [OBOL:automatic] synonym: "medulla oblonmgata brain biological structure" EXACT [OBOL:automatic] synonym: "medulla oblonmgata neuraxis segment" EXACT [OBOL:automatic] synonym: "medulla oblonmgata regional part of brain" EXACT [OBOL:automatic] synonym: "medulla oblonmgata segment of brain" EXACT [OBOL:automatic] synonym: "medullary oblongata segment" EXACT [FMA:71011] synonym: "metepencephalon anatomical structure of brain" EXACT [OBOL:automatic] synonym: "metepencephalon biological structure of brain" EXACT [OBOL:automatic] synonym: "metepencephalon brain anatomical structure" EXACT [OBOL:automatic] synonym: "metepencephalon brain biological structure" EXACT [OBOL:automatic] synonym: "metepencephalon neuraxis segment" EXACT [OBOL:automatic] synonym: "metepencephalon regional part of brain" EXACT [OBOL:automatic] synonym: "metepencephalon segment of brain" EXACT [OBOL:automatic] synonym: "neuraxis segment of bulb" EXACT [OBOL:automatic] synonym: "neuraxis segment of medulla oblongata" EXACT [OBOL:automatic] synonym: "neuraxis segment of medulla oblonmgata" EXACT [OBOL:automatic] synonym: "neuraxis segment of metepencephalon" EXACT [OBOL:automatic] synonym: "regional part of brain of bulb" EXACT [OBOL:automatic] synonym: "regional part of brain of medulla oblongata" EXACT [OBOL:automatic] synonym: "regional part of brain of medulla oblonmgata" EXACT [OBOL:automatic] synonym: "regional part of brain of metepencephalon" EXACT [OBOL:automatic] synonym: "segment of brain of bulb" EXACT [OBOL:automatic] synonym: "segment of brain of medulla oblongata" EXACT [OBOL:automatic] synonym: "segment of brain of medulla oblonmgata" EXACT [OBOL:automatic] synonym: "segment of brain of metepencephalon" EXACT [OBOL:automatic] synonym: "segment of medulla oblongata" EXACT [NIF_GrossAnatomy:birnlex_1355] xref: FMA:71011 xref: NIF_GrossAnatomy:birnlex_1355 is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain relationship: part_of UBERON:0001896 intersection_of: UBERON:0002616 ! regional part of brain intersection_of: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002679 name: anterodorsal nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1358-FMA_62141 synonym: "anterodorsal nucleus of thalamus" EXACT [FMA:62141] synonym: "anterodorsal nucleus of the thalamus" EXACT [NIF_GrossAnatomy:birnlex_1358] synonym: "anterodorsal thalamic nucleus" EXACT [FMA:62141] synonym: "nucleus anterior dorsalis" EXACT [NIF_GrossAnatomy:birnlex_1358] synonym: "nucleus anterior dorsalis thalami" EXACT [NIF_GrossAnatomy:birnlex_1358] synonym: "nucleus anterior thalami dorsalis" EXACT [NIF_GrossAnatomy:birnlex_1358] synonym: "nucleus anterodorsalis" EXACT [NIF_GrossAnatomy:birnlex_1358] synonym: "nucleus anterodorsalis (hassler)" EXACT [NIF_GrossAnatomy:birnlex_1358] synonym: "nucleus anterodorsalis thalami" EXACT [NIF_GrossAnatomy:birnlex_1358] synonym: "nucleus anterosuperior" EXACT [NIF_GrossAnatomy:birnlex_1358] synonym: "nucleus thalamicus anterodorsalis" EXACT [NIF_GrossAnatomy:birnlex_1358] xref: ABA:AD xref: BM:Die-Th-AD xref: FMA:62141 xref: NIF_GrossAnatomy:birnlex_1358 xref: SCTID:279127002 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: spatially_disjoint_from UBERON:0002681 {source="ABA"} ! anteromedial nucleus relationship: spatially_disjoint_from UBERON:0002685 {source="ABA"} ! anteroventral nucleus relationship: spatially_disjoint_from UBERON:0002984 {source="ABA"} ! lateral dorsal nucleus [Term] id: UBERON:0002680 name: regional part of metencephalon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1361-FMA_67942 def: "A regional part of brain that is part of a metencephalon [Obol]." [OBOL:automatic] synonym: "anatomical structure of brain of epencephalon-2" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of metencephalon" EXACT [OBOL:automatic] synonym: "biological structure of brain of epencephalon-2" EXACT [OBOL:automatic] synonym: "biological structure of brain of metencephalon" EXACT [OBOL:automatic] synonym: "brain anatomical structure of epencephalon-2" EXACT [OBOL:automatic] synonym: "brain anatomical structure of metencephalon" EXACT [OBOL:automatic] synonym: "brain biological structure of epencephalon-2" EXACT [OBOL:automatic] synonym: "brain biological structure of metencephalon" EXACT [OBOL:automatic] synonym: "epencephalon-2 anatomical structure of brain" EXACT [OBOL:automatic] synonym: "epencephalon-2 biological structure of brain" EXACT [OBOL:automatic] synonym: "epencephalon-2 brain anatomical structure" EXACT [OBOL:automatic] synonym: "epencephalon-2 brain biological structure" EXACT [OBOL:automatic] synonym: "epencephalon-2 neuraxis segment" EXACT [OBOL:automatic] synonym: "epencephalon-2 regional part of brain" EXACT [OBOL:automatic] synonym: "epencephalon-2 segment of brain" EXACT [OBOL:automatic] synonym: "metencephalon anatomical structure of brain" EXACT [OBOL:automatic] synonym: "metencephalon biological structure of brain" EXACT [OBOL:automatic] synonym: "metencephalon brain anatomical structure" EXACT [OBOL:automatic] synonym: "metencephalon brain biological structure" EXACT [OBOL:automatic] synonym: "metencephalon neuraxis segment" EXACT [OBOL:automatic] synonym: "metencephalon regional part of brain" EXACT [OBOL:automatic] synonym: "metencephalon segment of brain" EXACT [OBOL:automatic] synonym: "metencephalon subdivision" EXACT [FMA:67942] synonym: "neuraxis segment of epencephalon-2" EXACT [OBOL:automatic] synonym: "neuraxis segment of metencephalon" EXACT [OBOL:automatic] synonym: "regional part of brain of epencephalon-2" EXACT [OBOL:automatic] synonym: "regional part of brain of metencephalon" EXACT [OBOL:automatic] synonym: "segment of brain of epencephalon-2" EXACT [OBOL:automatic] synonym: "segment of brain of metencephalon" EXACT [OBOL:automatic] synonym: "segment of metencephalon" EXACT [NIF_GrossAnatomy:birnlex_1361] xref: FMA:67942 xref: NIF_GrossAnatomy:birnlex_1361 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain relationship: part_of UBERON:0001895 intersection_of: UBERON:0002616 ! regional part of brain intersection_of: part_of UBERON:0001895 ! metencephalon [Term] id: UBERON:0002681 name: anteromedial nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1365-FMA_62142 synonym: "anteromedial nucleus of thalamus" EXACT [FMA:62142] synonym: "anteromedial nucleus of the thalamus" EXACT [NIF_GrossAnatomy:birnlex_1365] synonym: "anteromedial thalamic nucleus" EXACT [FMA:62142] synonym: "nucleus anterior medialis" EXACT [NIF_GrossAnatomy:birnlex_1365] synonym: "nucleus anterior medialis thalami" EXACT [NIF_GrossAnatomy:birnlex_1365] synonym: "nucleus anterior thalami medialis" EXACT [NIF_GrossAnatomy:birnlex_1365] synonym: "nucleus anteromedialis" EXACT [NIF_GrossAnatomy:birnlex_1365] synonym: "nucleus anteromedialis (hassler)" EXACT [NIF_GrossAnatomy:birnlex_1365] synonym: "nucleus anteromedialis thalami" EXACT [NIF_GrossAnatomy:birnlex_1365] synonym: "nucleus thalamicus anteromedialis" EXACT [NIF_GrossAnatomy:birnlex_1365] xref: ABA:AM xref: BM:Die-AM xref: FMA:62142 xref: NIF_GrossAnatomy:birnlex_1365 xref: SCTID:279128007 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: spatially_disjoint_from UBERON:0002679 {source="ABA"} ! anterodorsal nucleus relationship: spatially_disjoint_from UBERON:0002685 {source="ABA"} ! anteroventral nucleus relationship: spatially_disjoint_from UBERON:0002984 {source="ABA"} ! lateral dorsal nucleus [Term] id: UBERON:0002682 name: abducens nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1366-FMA_54504 def: "The abducens nucleus is the originating nucleus from which the abducens nerve emerges - a cranial nerve nucleus. This nucleus is located beneath the fourth ventricle in the caudal portion of the pons, medial to the sulcus limitans. The abducens nucleus along with the internal genu of the facial nerve make up the facial colliculus, a hump at the caudal end of the medial eminence on the dorsal aspect of the pons. [WP,unvetted]." [Wikipedia:Abducens_nucleus] comment: part of medulla oblongata in ABA and ZFA; part of pons in MA and pontine tegmentum in NIF; note that pons/medulla are spatially disjoint in ABA. subset: uberon_slim subset: vertebrate_core synonym: "abducens motor nucleus" EXACT [ZFA:0000713] synonym: "abducens nerve nucleus" EXACT [FMA:54504] synonym: "abducens VI nucleus" EXACT [MA:0001010] synonym: "abducent nucleus" EXACT [FMA:54504] synonym: "motor nucleus VI" EXACT [ZFA:0000713] synonym: "nucleus nervi abducentis" EXACT [FMA:54504, FMA:TA] synonym: "nucleus of abducens nerve" EXACT [FMA:54504] synonym: "nucleus of abducens nerve (VI)" EXACT [FMA:54504] synonym: "nVI" EXACT [ZFA:0000713] synonym: "sixth cranial nerve nucleus" EXACT [FMA:54504] xref: ABA:VI xref: BM:Pons-VI xref: EV:0100266 xref: FMA:54504 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray696.png/200px-Gray696.png xref: MA:0001010 xref: ncithesaurus:Abducens_Nucleus xref: NIF_GrossAnatomy:birnlex_1366 xref: SCTID:280165008 xref: ZFA:0000713 is_a: UBERON:0000126 {source="FMA"} ! cranial nerve nucleus is_a: UBERON:0006331 ! implied link automatically realized ! brainstem nucleus is_a: UBERON:0009662 ! implied link automatically realized ! hindbrain nucleus relationship: part_of UBERON:0000988 {conflicts="ABA", conflicts="ZFA", source="GO", source="MA", source="NIF"} ! pons relationship: spatially_disjoint_from UBERON:0002143 {source="ABA"} ! dorsal tegmental nucleus relationship: spatially_disjoint_from UBERON:0002147 {source="ABA"} ! reticulotegmental nucleus relationship: spatially_disjoint_from UBERON:0002149 {source="ABA"} ! superior salivatory nucleus relationship: spatially_disjoint_from UBERON:0002633 {source="ABA"} ! motor nucleus of trigeminal nerve relationship: spatially_disjoint_from UBERON:0002963 {source="ABA"} ! caudal pontine reticular nucleus relationship: spatially_disjoint_from UBERON:0003011 {source="ABA"} ! facial motor nucleus relationship: spatially_disjoint_from UBERON:0007632 {source="ABA"} ! barrington's nucleus [Term] id: UBERON:0002683 name: rhinal sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1368-FMA_83746 def: "In the human brain, the rhinencephalon appears as a longitudinal elevation, with a corresponding internal furrow, on the under surface of the hemisphere close to the lamina terminalis; it is separated from the lateral surface of the hemisphere by a furrow, the external rhinal fissure (or rhinal sulcus), and is continuous behind with that part of the hemisphere, which will ultimately form the anterior end of the temporal lobe. [WP,unvetted]." [Wikipedia:Rhinal_sulcus] subset: uberon_slim synonym: "fissura rhinalis" EXACT [NIF_GrossAnatomy:birnlex_1368] synonym: "rhinal fissuer (turner, rezius)" EXACT [NIF_GrossAnatomy:birnlex_1368] synonym: "rhinal fissure" EXACT [FMA:83746] synonym: "sulcus rhinalis" EXACT [NIF_GrossAnatomy:birnlex_1368] xref: BM:Tel-Cx-RS xref: FMA:83746 xref: NIF_GrossAnatomy:birnlex_1368 xref: SCTID:279357002 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002684 name: nucleus raphe obscurus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1369-FMA_72585 def: "The raphe obscurus projects to the cerebellar lobes VI and VII and to crus II along with the nucleus raphe pontis . This so called obscure nucleus has also been implicated in the modulation of the hypoglossal nerve. It has been observed that the ablation of this nucleus causes a change in the firing pattern in the XII nerve . In addition, the raphe obscurus mediates expiration via the inhibitory effect of serotonin and depresses periodic synaptic potentials . It has also been shown that this nucleus stimulates gastrointestinal motor function; microinjections of 5-HT into the n.r. obscurus increase gastric movement . [WP,unvetted]." [Wikipedia:Nucleus_raphe_obscurus] subset: uberon_slim synonym: "nucleus raphes obscurus" EXACT [FMA:72585, FMA:TA] synonym: "obscurus raphe nucleus" EXACT [FMA:72585] synonym: "raphe obscurus nucleus" EXACT [FMA:72585] xref: ABA:RO xref: FMA:72585 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/94/Gray694.png/200px-Gray694.png xref: MA:0002981 xref: NIF_GrossAnatomy:birnlex_1369 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002677 ! implied link automatically realized ! regional part of medullary raphe nuclear complex is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter is_a: UBERON:0007635 ! implied link automatically realized ! nucleus of medulla oblongata relationship: part_of UBERON:0002692 {source="FMA"} ! medullary raphe nuclear complex relationship: spatially_disjoint_from UBERON:0002156 {source="ABA"} ! nucleus raphe magnus relationship: spatially_disjoint_from UBERON:0002157 {source="ABA"} ! nucleus raphe pallidus [Term] id: UBERON:0002685 name: anteroventral nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1372-FMA_62143 synonym: "anterior ventral nucleus of thalamus" EXACT [FMA:62143] synonym: "anteroprincipal thalamic nucleus" EXACT [FMA:62143] synonym: "anteroventral nucleus of thalamus" EXACT [FMA:62143] synonym: "anteroventral nucleus of the thalamus" EXACT [NIF_GrossAnatomy:birnlex_1372] synonym: "anteroventral thalamic nucleus" EXACT [FMA:62143] synonym: "nucleus anterior thalami ventralis" EXACT [NIF_GrossAnatomy:birnlex_1372] synonym: "nucleus anterior ventralis" EXACT [NIF_GrossAnatomy:birnlex_1372] synonym: "nucleus anteroinferior" EXACT [NIF_GrossAnatomy:birnlex_1372] synonym: "nucleus anteroventralis" EXACT [NIF_GrossAnatomy:birnlex_1372] synonym: "nucleus anteroventralis thalami" EXACT [NIF_GrossAnatomy:birnlex_1372] synonym: "nucleus thalamicus anteroprincipalis" EXACT [NIF_GrossAnatomy:birnlex_1372] synonym: "nucleus thalamicus anteroventralis" EXACT [NIF_GrossAnatomy:birnlex_1372] xref: ABA:AV xref: BM:Die-AV xref: EV:0100199 xref: FMA:62143 xref: NIF_GrossAnatomy:birnlex_1372 xref: SCTID:279130009 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: spatially_disjoint_from UBERON:0002679 {source="ABA"} ! anterodorsal nucleus relationship: spatially_disjoint_from UBERON:0002681 {source="ABA"} ! anteromedial nucleus relationship: spatially_disjoint_from UBERON:0002984 {source="ABA"} ! lateral dorsal nucleus [Term] id: UBERON:0002686 name: angular gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1376-FMA_61898 def: "The angular gyrus is a region of the brain in the parietal lobe, that lies near the superior edge of the temporal lobe, and immediately posterior to the supramarginal gyrus; it is involved in a number of processes related to language, mathematics and cognition. It is Brodmann area 39 of the human brain. [WP,unvetted]." [Wikipedia:Angular_gyrus] subset: uberon_slim synonym: "middle part of inferior parietal lobule" EXACT [FMA:61898] synonym: "preoccipital gyrus" EXACT [FMA:61898] xref: FMA:61898 xref: ncithesaurus:Angular_Gyrus xref: NIF_GrossAnatomy:birnlex_1376 xref: SCTID:279186009 is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0001872 ! parietal lobe [Term] id: UBERON:0002687 name: area x alt_id: UBERON:NIF_GrossAnatomy_birnlex_1379-FMA_62198 synonym: "anteromedial part of ventral lateral posterior nucleus (jones)" EXACT [] synonym: "area x of olszewski" EXACT [NIF_GrossAnatomy:birnlex_1379] synonym: "nucleus lateralis intermedius mediodorsalis situs ventralis medialis" EXACT [NIF_GrossAnatomy:birnlex_1379] synonym: "nucleus ventralis oralis, pars posterior (dewulf)" EXACT [NIF_GrossAnatomy:birnlex_1379] synonym: "nucleus ventrooralis internus (hassler)" EXACT [NIF_GrossAnatomy:birnlex_1379] synonym: "nucleus ventrooralis internus, superior part" EXACT [NIF_GrossAnatomy:birnlex_1379] xref: FMA:62198 xref: NIF_GrossAnatomy:birnlex_1379 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001925 ! ventral lateral nucleus [Term] id: UBERON:0002688 name: supramarginal gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1381-FMA_61897 def: "Brodmann area 40, or BA40, is part of the parietal cortex in the human brain. The inferior part of BA40 is in the area of the supramarginal gyrus, which lies at the posterior end of the lateral fissure, in the inferior lateral part of the parietal lobe. It is bounded approximately by the intraparietal sulcus, the inferior postcentral sulcus, the posterior subcentral sulcus and the lateral sulcus. Cytoarchitecturally it is bounded caudally by the angular area 39 (H), rostrally and dorsally by the caudal postcentral area 2, and ventrally by the subcentral area 43 and the superior temporal area 22 (Brodmann-1909). Cytoarchitectonically defined subregions of rostral BA40/the supramarginal gyrus are PF, PFcm, PFm, PFop, and PFt. Area PF is the homologue to macaque area PF, part of the mirror neuron system, and active in humans during imitation. The supramarginal gyrus part of Brodmann area 40 is the region in the inferior parietal lobe that is involved in reading both in regards to meaning and phonology. [WP,unvetted]." [Wikipedia:Supramarginal_gyrus] subset: uberon_slim synonym: "anterior part of inferior parietal lobule" EXACT [FMA:61897] synonym: "Brodmann area 40" EXACT [Wikipedia:Supramarginal_gyrus] synonym: "inferior parietal lobule (krieg)" EXACT [] xref: FMA:61897 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e2/Gehirn%2C_lateral_-_Hauptgyri_beschriftet.svg/200px-Gehirn%2C_lateral_-_Hauptgyri_beschriftet.svg.png xref: ncithesaurus:Supramarginal_Gyrus xref: NIF_GrossAnatomy:birnlex_1381 xref: SCTID:279185008 is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0001872 ! parietal lobe [Term] id: UBERON:0002689 name: supraoptic crest alt_id: UBERON:NIF_GrossAnatomy_birnlex_1400-FMA_62315 synonym: "organum vasculosum laminae terminalis" EXACT [FMA:62315, FMA:TA] synonym: "prechiasmatic gland" EXACT [NIF_GrossAnatomy:birnlex_1400] synonym: "vascular organ of lamina terminalis" EXACT [FMA:62315] xref: ABA:OV xref: FMA:62315 xref: NIF_GrossAnatomy:birnlex_1400 is_a: UBERON:0000064 ! organ part relationship: spatially_disjoint_from UBERON:0001934 {source="ABA"} ! dorsomedial nucleus of hypothalamus relationship: spatially_disjoint_from UBERON:0002034 {source="ABA"} ! suprachiasmatic nucleus relationship: spatially_disjoint_from UBERON:0002219 {source="ABA"} ! subfornical organ relationship: spatially_disjoint_from UBERON:0002625 {source="ABA"} ! median preoptic nucleus relationship: spatially_disjoint_from UBERON:0002690 {source="ABA"} ! anteroventral periventricular nucleus relationship: spatially_disjoint_from UBERON:0007626 {source="ABA"} ! subparaventricular zone [Term] id: UBERON:0002690 name: anteroventral periventricular nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1401-FMA_62314 xref: ABA:AVPV xref: FMA:62314 xref: NIF_GrossAnatomy:birnlex_1401 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: spatially_disjoint_from UBERON:0001934 {source="ABA"} ! dorsomedial nucleus of hypothalamus relationship: spatially_disjoint_from UBERON:0002034 {source="ABA"} ! suprachiasmatic nucleus relationship: spatially_disjoint_from UBERON:0002219 {source="ABA"} ! subfornical organ relationship: spatially_disjoint_from UBERON:0002625 {source="ABA"} ! median preoptic nucleus relationship: spatially_disjoint_from UBERON:0002689 {source="ABA"} ! supraoptic crest relationship: spatially_disjoint_from UBERON:0007626 {source="ABA"} ! subparaventricular zone [Term] id: UBERON:0002691 name: ventral tegmental area alt_id: UBERON:NIF_GrossAnatomy_birnlex_1415-FMA_72438 def: "The ventral tegmentum (tegmentum is Latin for covering), better known as the ventral tegmental area (VTA), is a group of neurons located close to the midline on the floor of the midbrain. The VTA, the origin of dopaminergic cell bodies that comprise the mesocorticolimbic dopamine system, is widely implicated in the drug and natural reward circuitry of the brain, cognition, motivation, drug addiction, and several psychiatric disorders. The VTA contains neurons that project to numerous areas of the brain, from the prefrontal cortex (PFC) to the caudal brainstem and everywhere in between. [WP,unvetted]." [Wikipedia:Ventral_tegmental_area] subset: uberon_slim synonym: "ventral tegmental area of tsai" EXACT [] synonym: "ventral tegmental nucleus (tsai)" EXACT [] synonym: "ventral tegmental nucleus of tsai" EXACT [] xref: ABA:VTA xref: BM:MB-VTA xref: EFO:0001935 xref: FMA:72438 xref: GAID:587 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b6/Gray712.png/200px-Gray712.png xref: MESH:A.08.186.211.132.659.822.820 xref: NIF_GrossAnatomy:birnlex_1415 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter is_a: UBERON:0007414 ! implied link automatically realized ! nucleus of midbrain tegmentum relationship: part_of UBERON:0001943 ! midbrain tegmentum relationship: spatially_disjoint_from UBERON:0001715 {source="ABA"} ! oculomotor nuclear complex relationship: spatially_disjoint_from UBERON:0001944 {source="ABA"} ! pretectal region relationship: spatially_disjoint_from UBERON:0001947 {source="ABA"} ! red nucleus relationship: spatially_disjoint_from UBERON:0001966 {source="ABA"} ! substantia nigra pars reticulata relationship: spatially_disjoint_from UBERON:0002141 {source="ABA"} ! parvocellular oculomotor nucleus relationship: spatially_disjoint_from UBERON:0002438 {source="ABA"} ! ventral tegmental nucleus relationship: spatially_disjoint_from UBERON:0002696 {source="ABA"} ! cuneiform nucleus relationship: spatially_disjoint_from UBERON:0002722 {source="ABA"} ! trochlear nucleus relationship: spatially_disjoint_from UBERON:0002995 {source="ABA"} ! substantia nigra pars lateralis relationship: spatially_disjoint_from UBERON:0003040 {source="ABA"} ! central gray substance of midbrain [Term] id: UBERON:0002692 name: medullary raphe nuclear complex alt_id: UBERON:NIF_GrossAnatomy_birnlex_1420-FMA_68874 synonym: "raphe medullae oblongatae" EXACT [FMA:68874, FMA:TA] synonym: "raphe nuclei of medulla" EXACT [FMA:68874] synonym: "raphe of medulla oblongata" EXACT [FMA:68874] xref: FMA:68874 xref: NIF_GrossAnatomy:birnlex_1420 xref: SCTID:362420006 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001896 {source="FMA"} ! medulla oblongata relationship: part_of UBERON:0004684 {source="Wikipedia"} ! raphe nuclei [Term] id: UBERON:0002693 name: occipitotemporal sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1422-FMA_74518 synonym: "inferior temporal fissure" EXACT [FMA:74518] synonym: "inferior temporal fissure (crosby)" EXACT [NIF_GrossAnatomy:birnlex_1422] synonym: "inferior temporal sulcus (roberts)" EXACT [] synonym: "inferior temporal sulcus (szikla)" EXACT [] synonym: "inferior temporal sulcus-2" EXACT [FMA:74518] synonym: "lateral occipitotemporal sulcus" EXACT [NIF_GrossAnatomy:birnlex_1422] synonym: "occipito-temporal sulcus" EXACT [FMA:74518] synonym: "third temporal sulcus" EXACT [FMA:74518] xref: BM:Tel-Cx-OTS xref: FMA:74518 xref: NIF_GrossAnatomy:birnlex_1422 xref: SCTID:369220009 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002694 name: anterior hypothalamic commissure alt_id: UBERON:NIF_GrossAnatomy_birnlex_1424-FMA_62053 synonym: "anterior hypothalamic commissure (ganser)" EXACT [] synonym: "anterior hypothalamic decussation of ganser" EXACT [] xref: FMA:62053 xref: NIF_GrossAnatomy:birnlex_1424 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0002695 name: parieto-occipital sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1428-FMA_83754 def: "Only a small part of the Parietooccipital Fissure (or parieto-occipital sulcus) is seen on the lateral surface of the hemisphere, its chief part being on the medial surface. The lateral part of the parietooccipital fissure (Fig. 726) is situated about 5 cm. in front of the occipital pole of the hemisphere, and measures about 1.25 cm. in length. The medial part of the parietooccipital fissure (Fig. 727) runs downward and forward as a deep cleft on the medial surface of the hemisphere, and joins the calcarine fissure below and behind the posterior end of the corpus callosum. In most cases it contains a submerged gyrus. [WP,unvetted]." [Wikipedia:Parieto-occipital_sulcus] subset: uberon_slim synonym: "fissura parieto-occipitalis" EXACT [NIF_GrossAnatomy:birnlex_1428] synonym: "parieto-occipital fissure" EXACT [FMA:83754] synonym: "parieto-occipital incisure" EXACT [FMA:83754] synonym: "parietooccipital sulcus" EXACT [FMA:83754] synonym: "sulcus parieto-occipitalis" EXACT [NIF_GrossAnatomy:birnlex_1428] synonym: "sulcus parieto-occipitalis medialis" EXACT [NIF_GrossAnatomy:birnlex_1428] synonym: "sulcus parietoccipitalis" EXACT [NIF_GrossAnatomy:birnlex_1428] synonym: "sulcus parietooccipitalis" EXACT [NIF_GrossAnatomy:birnlex_1428] xref: BM:Tel-Cx-POS xref: FMA:83754 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5d/Gray726_parieto-occipital_sulcus.png/200px-Gray726_parieto-occipital_sulcus.png xref: ncithesaurus:Parieto-occipital_Fissure xref: NIF_GrossAnatomy:birnlex_1428 xref: OpenCyc:Mx4rv7l_DJwpEbGdrcN5Y29ycA xref: SCTID:279354009 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002696 name: cuneiform nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1430-FMA_72427 synonym: "parabigeminal area (mai)" EXACT [] xref: ABA:CUN xref: BM:MB-CNF xref: FMA:72427 xref: NIF_GrossAnatomy:birnlex_1430 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: spatially_disjoint_from UBERON:0001715 {source="ABA"} ! oculomotor nuclear complex relationship: spatially_disjoint_from UBERON:0001944 {source="ABA"} ! pretectal region relationship: spatially_disjoint_from UBERON:0001947 {source="ABA"} ! red nucleus relationship: spatially_disjoint_from UBERON:0001966 {source="ABA"} ! substantia nigra pars reticulata relationship: spatially_disjoint_from UBERON:0002141 {source="ABA"} ! parvocellular oculomotor nucleus relationship: spatially_disjoint_from UBERON:0002438 {source="ABA"} ! ventral tegmental nucleus relationship: spatially_disjoint_from UBERON:0002691 {source="ABA"} ! ventral tegmental area relationship: spatially_disjoint_from UBERON:0002722 {source="ABA"} ! trochlear nucleus relationship: spatially_disjoint_from UBERON:0002995 {source="ABA"} ! substantia nigra pars lateralis relationship: spatially_disjoint_from UBERON:0003040 {source="ABA"} ! central gray substance of midbrain [Term] id: UBERON:0002697 name: dorsal supraoptic decussation alt_id: UBERON:NIF_GrossAnatomy_birnlex_1433-FMA_62051 synonym: "commissura supraoptica dorsalis" EXACT [FMA:62051, FMA:TA] synonym: "commissure of meynert" EXACT [] synonym: "dorsal supra-optic commissure" EXACT [FMA:62051] synonym: "dorsal supraoptic commissure" EXACT [FMA:62051] synonym: "dorsal supraoptic commissure (of ganser)" EXACT [] synonym: "dorsal supraoptic decussation (of ganser)" EXACT [NIF_GrossAnatomy:birnlex_1433] synonym: "dorsal supraoptic decussation (of meynert)" EXACT [NIF_GrossAnatomy:birnlex_1433] synonym: "dorsal supraoptic decussation of meynert" EXACT [] synonym: "ganser's commissure" EXACT [FMA:62051] synonym: "meynert's commissure" EXACT [FMA:62051] synonym: "supraoptic commissure of meynert" EXACT [] synonym: "supraoptic commissures, dorsal" EXACT [FMA:62051] xref: FMA:62051 xref: NIF_GrossAnatomy:birnlex_1433 is_a: UBERON:0001020 ! commissure [Term] id: UBERON:0002698 name: preoccipital notch alt_id: UBERON:NIF_GrossAnatomy_birnlex_1436-FMA_83739 synonym: "incisura parieto-occipitalis" EXACT [NIF_GrossAnatomy:birnlex_1436] synonym: "incisura praeoccipitalis" EXACT [NIF_GrossAnatomy:birnlex_1436] synonym: "incisura preoccipitalis" EXACT [NIF_GrossAnatomy:birnlex_1436] synonym: "occipital notch" EXACT [FMA:83739] synonym: "preoccipital incisura" EXACT [FMA:83739] synonym: "preoccipital incisure" EXACT [FMA:83739] xref: FMA:83739 xref: NIF_GrossAnatomy:birnlex_1436 xref: SCTID:369229005 is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0002699 name: supraopticohypophysial tract alt_id: UBERON:NIF_GrossAnatomy_birnlex_1440-FMA_62054 synonym: "supra-opticohypophysial tract" EXACT [FMA:62054] synonym: "supraopticohypophyseal tract" EXACT [FMA:62054] synonym: "tractus supraopticohypophysialis" EXACT [FMA:62054, FMA:TA] xref: FMA:62054 xref: NIF_GrossAnatomy:birnlex_1440 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0002700 name: subcuneiform nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1441-FMA_72428 synonym: "subcuneiform area of midbrain" EXACT [FMA:72428] xref: FMA:72428 xref: NIF_GrossAnatomy:birnlex_1441 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter [Term] id: UBERON:0002701 name: anterior median oculomotor nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1445-FMA_72423 synonym: "anterior median nucleus of oculomotor nerve" EXACT [FMA:72423] xref: FMA:72423 xref: NIF_GrossAnatomy:birnlex_1445 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter [Term] id: UBERON:0002702 name: middle frontal gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1451-FMA_61859 def: "The middle frontal gyrus makes up about one-third of the frontal lobe of the human brain. (A gyrus is one of the prominent 'bumps' or 'ridges' on the surface of the human brain. ) The middle frontal gyrus, like the inferior frontal gyrus and the superior frontal gyrus, is more of a region than a true gyrus. The borders of the middle frontal gyrus are the inferior frontal sulcus below; the superior frontal sulcus above; and the precentral sulcus behind. [WP,unvetted]." [Wikipedia:Middle_frontal_gyrus] subset: uberon_slim synonym: "gyrus frontalis medialis" EXACT [FMA:61859, FMA:TA] synonym: "intermediate frontal gyrus" EXACT [FMA:61859] synonym: "medial frontal gyrus" EXACT [FMA:61859] xref: BTO:0004834 xref: FMA:61859 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7f/Middle_frontal_gyrus.png/200px-Middle_frontal_gyrus.png xref: ncithesaurus:Middle_Frontal_Gyrus xref: NIF_GrossAnatomy:birnlex_1451 xref: SCTID:362332009 is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0001870 ! frontal cortex [Term] id: UBERON:0002703 name: precentral gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1455-FMA_61894 def: "The primary motor cortex (or M1) is a brain region that in humans is located in the posterior portion of the frontal lobe. It works in association with pre-motor areas to plan and execute movements. M1 contains large neurons known as Betz cells which send long axons down the spinal cord to synapse onto alpha motor neurons which connect to the muscles. Pre-motor areas are involved in planning actions (in concert with the basal ganglia) and refining movements based upon sensory input (this requires the cerebellum). [WP,unvetted]." [Wikipedia:Precentral_gyrus] subset: uberon_slim synonym: "precentral convolution" EXACT [FMA:61894] synonym: "prerolandic gyrus" EXACT [FMA:61894] xref: EFO:0001373 xref: FMA:61894 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/eb/Ba4.png/200px-Ba4.png xref: ncithesaurus:Precentral_Gyrus xref: NIF_GrossAnatomy:birnlex_1455 is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0001870 ! frontal cortex [Term] id: UBERON:0002704 name: metathalamus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1461-FMA_62023 def: "The metathalamus is a composite structure of the thalamus, consisting of the medial geniculate nucleus and the lateral geniculate nucleus. [WP,unvetted]." [Wikipedia:Metathalamus] comment: note we follow FMA in making this a subtype of nucleus, but in fact it is a group containing two nuclei subset: uberon_slim synonym: "geniculate group of the dorsal thalamus" EXACT [FMA:62023] synonym: "nuclei metathalami" EXACT [NIF_GrossAnatomy:birnlex_1461] xref: ABA:GENd xref: EV:0100217 xref: FMA:62023 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/ThalamicNuclei.png/200px-ThalamicNuclei.png xref: MA:0000868 xref: NIF_GrossAnatomy:birnlex_1461 xref: SCTID:361550004 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter is_a: UBERON:0007692 ! implied link automatically realized ! nucleus of thalamus relationship: part_of UBERON:0004703 {source="MA"} ! dorsal thalamus relationship: spatially_disjoint_from UBERON:0002144 {source="ABA"} ! peripeduncular nucleus relationship: spatially_disjoint_from UBERON:0002776 {source="ABA"} ! ventral nuclear group [Term] id: UBERON:0002705 name: midline nuclear group alt_id: UBERON:NIF_GrossAnatomy_birnlex_1462-FMA_62020 def: "The midline nuclear group (or midline thalamic nuclei) a region of the thalamus consisting of the following nuclei: paraventricular nucleus of thalamus (nucleus paraventricularis thalami) - not to be confused with paraventricular nucleus of hypothalamus paratenial nucleus (nucleus parataenialis) reuniens nucleus (nucleus reuniens) rhomboidal nucleus (nucleus commissuralis rhomboidalis) subfascicular nucleus (nucleus subfascicularis) [WP,unvetted]." [Wikipedia:Midline_nuclear_group] subset: uberon_slim synonym: "median nuclei of thalamus" EXACT [FMA:62020] synonym: "midline nuclear group" EXACT [FMA:62020] synonym: "midline nuclear group of thalamus" EXACT [FMA:62020] synonym: "midline nuclei of thalamus" EXACT [FMA:62020] synonym: "midline thalamic group" EXACT [MA:0000864] synonym: "nuclei mediani (thalami)" EXACT [NIF_GrossAnatomy:birnlex_1462] synonym: "nuclei mediani thalami" EXACT [FMA:62020, FMA:TA] synonym: "periventricular nuclei of thalamus" EXACT [FMA:62020] xref: BTO:0002454 xref: FMA:62020 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/ThalamicNuclei.png/200px-ThalamicNuclei.png xref: MA:0000864 xref: NIF_GrossAnatomy:birnlex_1462 xref: SCTID:279163002 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter is_a: UBERON:0007692 ! implied link automatically realized ! nucleus of thalamus relationship: part_of UBERON:0001897 {source="FMA"} ! thalamus relationship: part_of UBERON:0004703 {source="MA"} ! dorsal thalamus [Term] id: UBERON:0002706 name: posterior nucleus of hypothalamus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1463-FMA_62350 synonym: "area hypothalamica posterior" EXACT [FMA:62350, FMA:TA] synonym: "nucleus posterior hypothalami" RELATED [BTO:0002461] synonym: "posterior hypothalamic area" EXACT [FMA:62350] synonym: "posterior hypothalamic nucleus" EXACT [FMA:62350] xref: ABA:PH xref: BM:Die-Hy-HPA xref: BTO:0002461 xref: EV:0100235 xref: FMA:62350 xref: NIF_GrossAnatomy:birnlex_1463 xref: SCTID:362385002 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: spatially_disjoint_from UBERON:0001935 {source="ABA"} ! ventromedial nucleus of hypothalamus relationship: spatially_disjoint_from UBERON:0002035 {source="ABA"} ! medial preoptic nucleus relationship: spatially_disjoint_from UBERON:0002206 {source="ABA"} ! mammillary body relationship: spatially_disjoint_from UBERON:0002634 {source="ABA"} ! anterior nucleus of hypothalamus [Term] id: UBERON:0002707 name: pyramidal tract alt_id: UBERON:NIF_GrossAnatomy_birnlex_1464-FMA_72634 def: "The corticospinal or pyramidal tract is a collection of axons that travel between the cerebral cortex of the brain and the spinal cord. The corticospinal tract mostly contains motor axons. It actually consists of two separate tracts in the spinal cord: the lateral corticospinal tract and the medial corticospinal tract. An understanding of these tracts leads to an understanding of why for the most part, one side of the body is controlled by the opposite side of the brain. Also the corticobulbar tract is considered to be a pyramidal tract. The corticobulbar tract carries signals that control motor neurons located in cranial nerve brain nuclei rather than motor neurons located in the spinal cord. The neurons of the pyramidal tracts are pyramidal neurons, but that is not how the pyramidal tract got its name, as most of the pyramidal neurons send their axons elsewhere. Instead, it got its name from the shape of the corticospinal axon tracts: when the pyramidal tract passes the medulla, it forms a dense bundle of nerve fibres that is shaped somewhat like a pyramid. [WP,unvetted]." [Wikipedia:Pyramidal_tract] subset: uberon_slim xref: BM:Me-PyT xref: FMA:72634 xref: GAID:702 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ac/Gray684.png/200px-Gray684.png xref: MESH:A.08.186.854.633 xref: NIF_GrossAnatomy:birnlex_1464 xref: SCTID:362325000 is_a: UBERON:0002316 ! white matter is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002708 name: posterior periventricular nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1466-FMA_62349 synonym: "nucleus periventricularis posterior" RELATED [BTO:0002479] synonym: "periventricular nucleus, posterior subdivision" EXACT [FMA:62349] synonym: "posterior periventricular hypothalamic nucleus" EXACT [NIF_GrossAnatomy:birnlex_1466] synonym: "posterior periventricular nucleus" EXACT [FMA:62349] synonym: "posterior periventricular nucleus of hypothalamus" EXACT [FMA:62349] xref: BTO:0002479 xref: FMA:62349 xref: NIF_GrossAnatomy:birnlex_1466 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter [Term] id: UBERON:0002709 name: posterior nuclear complex alt_id: UBERON:NIF_GrossAnatomy_birnlex_1467-FMA_62024 subset: vertebrate_core synonym: "nuclei posteriores thalami" EXACT [NIF_GrossAnatomy:birnlex_1467] synonym: "posterior complex of thalamus" EXACT [FMA:62024] synonym: "posterior nuclear complex" EXACT [FMA:62024] synonym: "posterior nuclear complex of thalamus" EXACT [FMA:62024] synonym: "posterior nuclear group of thalamus" EXACT [FMA:62024] synonym: "posterior thalamic nuclear group" EXACT [FMA:62024] synonym: "posterior thalamic nucleus" RELATED [BTO:0002462] xref: ABA:PO xref: BTO:0002462 xref: FMA:62024 xref: NIF_GrossAnatomy:birnlex_1467 xref: SCTID:424395006 xref: ZFA:0000325 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter is_a: UBERON:0007692 ! implied link automatically realized ! nucleus of thalamus relationship: part_of UBERON:0001897 ! thalamus relationship: spatially_disjoint_from UBERON:0002983 {source="ABA"} ! lateral posterior nucleus relationship: spatially_disjoint_from UBERON:0003033 {source="ABA"} ! suprageniculate nucleus [Term] id: UBERON:0002710 name: cingulate sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1468-FMA_83748 def: "The cingulate sulcus is a sulcus (brain fold) on the medial wall of the cerebral cortex. The frontal and parietal lobes are separated by the cingulate sulcus from the cingulate gyrus. [WP,unvetted]." [Wikipedia:Cingulate_sulcus] subset: uberon_slim synonym: "calloso-marginal sulcus" EXACT [FMA:83748] synonym: "callosomarginal fissure" EXACT [FMA:83748] synonym: "callosomarginal sulcus" EXACT [FMA:83748] synonym: "cingulate fissure" EXACT [FMA:83748] synonym: "sulcus callosomarginalis" EXACT [NIF_GrossAnatomy:birnlex_1468] synonym: "sulcus cingulatus" EXACT [NIF_GrossAnatomy:birnlex_1468] synonym: "sulcus cinguli" EXACT [NIF_GrossAnatomy:birnlex_1468] xref: BM:Tel-Cx-CGS xref: FMA:83748 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2e/Gray727_cingulate_sulcus.svg/200px-Gray727_cingulate_sulcus.svg.png xref: NIF_GrossAnatomy:birnlex_1468 xref: SCTID:279350000 is_a: UBERON:0000093 ! sulcus relationship: adjacent_to UBERON:0002967 ! cingulate gyrus [Term] id: UBERON:0002711 name: nucleus of posterior commissure alt_id: UBERON:NIF_GrossAnatomy_birnlex_1470-FMA_68463 synonym: "posterior commissure nucleus" EXACT [FMA:68463] xref: ABA:NPC xref: BM:NPC xref: FMA:68463 xref: NIF_GrossAnatomy:birnlex_1470 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter is_a: UBERON:0007414 ! implied link automatically realized ! nucleus of midbrain tegmentum relationship: part_of UBERON:0001943 ! midbrain tegmentum relationship: spatially_disjoint_from UBERON:0002565 {source="ABA"} ! olivary pretectal nucleus relationship: spatially_disjoint_from UBERON:0002996 {source="ABA"} ! nucleus of optic tract relationship: spatially_disjoint_from UBERON:0006848 {source="ABA"} ! posterior pretectal nucleus [Term] id: UBERON:0002712 name: premammillary nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1473-FMA_62348 synonym: "premammillary nuclei" EXACT [FMA:62348] xref: FMA:62348 xref: NIF_GrossAnatomy:birnlex_1473 is_a: UBERON:0002789 ! implied link automatically realized ! regional part of posterior hypothalamic region is_a: UBERON:0006568 {source="FMA"} ! hypothalamic nucleus relationship: part_of UBERON:0002770 {source="FMA"} ! posterior hypothalamic region [Term] id: UBERON:0002713 name: circular sulcus of insula alt_id: UBERON:NIF_GrossAnatomy_birnlex_1475-FMA_83753 def: "A marginal sulcus that is part of a insula [Obol]." [OBOL:automatic] synonym: "central lobe marginal branch of cingulate sulcus" EXACT [OBOL:automatic] synonym: "central lobe marginal ramus of cingulate sulcus" EXACT [OBOL:automatic] synonym: "central lobe marginal sulcus" EXACT [OBOL:automatic] synonym: "circular fissure" EXACT [FMA:83753] synonym: "circular sulcus (of reil)" EXACT [] synonym: "circuminsular sulcus" EXACT [FMA:83753] synonym: "ciruclar insular sulcus" EXACT [NIF_GrossAnatomy:birnlex_1475] synonym: "cortex of island marginal branch of cingulate sulcus" EXACT [OBOL:automatic] synonym: "cortex of island marginal ramus of cingulate sulcus" EXACT [OBOL:automatic] synonym: "cortex of island marginal sulcus" EXACT [OBOL:automatic] synonym: "insula lobule marginal branch of cingulate sulcus" EXACT [OBOL:automatic] synonym: "insula lobule marginal ramus of cingulate sulcus" EXACT [OBOL:automatic] synonym: "insula lobule marginal sulcus" EXACT [OBOL:automatic] synonym: "insula marginal branch of cingulate sulcus" EXACT [OBOL:automatic] synonym: "insula marginal ramus of cingulate sulcus" EXACT [OBOL:automatic] synonym: "insula marginal sulcus" EXACT [OBOL:automatic] synonym: "insular cortex marginal branch of cingulate sulcus" EXACT [OBOL:automatic] synonym: "insular cortex marginal ramus of cingulate sulcus" EXACT [OBOL:automatic] synonym: "insular cortex marginal sulcus" EXACT [OBOL:automatic] synonym: "insular lobe marginal branch of cingulate sulcus" EXACT [OBOL:automatic] synonym: "insular lobe marginal ramus of cingulate sulcus" EXACT [OBOL:automatic] synonym: "insular lobe marginal sulcus" EXACT [OBOL:automatic] synonym: "insular region marginal branch of cingulate sulcus" EXACT [OBOL:automatic] synonym: "insular region marginal ramus of cingulate sulcus" EXACT [OBOL:automatic] synonym: "insular region marginal sulcus" EXACT [OBOL:automatic] synonym: "island of reil marginal branch of cingulate sulcus" EXACT [OBOL:automatic] synonym: "island of reil marginal ramus of cingulate sulcus" EXACT [OBOL:automatic] synonym: "island of reil marginal sulcus" EXACT [OBOL:automatic] synonym: "limiting fissure" EXACT [FMA:83753] synonym: "marginal branch of cingulate sulcus of central lobe" EXACT [OBOL:automatic] synonym: "marginal branch of cingulate sulcus of cortex of island" EXACT [OBOL:automatic] synonym: "marginal branch of cingulate sulcus of insula" EXACT [OBOL:automatic] synonym: "marginal branch of cingulate sulcus of insula lobule" EXACT [OBOL:automatic] synonym: "marginal branch of cingulate sulcus of insular cortex" EXACT [OBOL:automatic] synonym: "marginal branch of cingulate sulcus of insular lobe" EXACT [OBOL:automatic] synonym: "marginal branch of cingulate sulcus of insular region" EXACT [OBOL:automatic] synonym: "marginal branch of cingulate sulcus of island of reil" EXACT [OBOL:automatic] synonym: "marginal insular sulcus" EXACT [NIF_GrossAnatomy:birnlex_1475] synonym: "marginal ramus of cingulate sulcus of central lobe" EXACT [OBOL:automatic] synonym: "marginal ramus of cingulate sulcus of cortex of island" EXACT [OBOL:automatic] synonym: "marginal ramus of cingulate sulcus of insula" EXACT [OBOL:automatic] synonym: "marginal ramus of cingulate sulcus of insula lobule" EXACT [OBOL:automatic] synonym: "marginal ramus of cingulate sulcus of insular cortex" EXACT [OBOL:automatic] synonym: "marginal ramus of cingulate sulcus of insular lobe" EXACT [OBOL:automatic] synonym: "marginal ramus of cingulate sulcus of insular region" EXACT [OBOL:automatic] synonym: "marginal ramus of cingulate sulcus of island of reil" EXACT [OBOL:automatic] synonym: "marginal sulcus of central lobe" EXACT [OBOL:automatic] synonym: "marginal sulcus of cortex of island" EXACT [OBOL:automatic] synonym: "marginal sulcus of insula" EXACT [FMA:83753] synonym: "marginal sulcus of insula lobule" EXACT [OBOL:automatic] synonym: "marginal sulcus of insular cortex" EXACT [OBOL:automatic] synonym: "marginal sulcus of insular lobe" EXACT [OBOL:automatic] synonym: "marginal sulcus of insular region" EXACT [OBOL:automatic] synonym: "marginal sulcus of island of reil" EXACT [OBOL:automatic] synonym: "sulcus circularis insulae" EXACT [NIF_GrossAnatomy:birnlex_1475] synonym: "sulcus marginalis insulae" EXACT [NIF_GrossAnatomy:birnlex_1475] xref: FMA:83753 xref: NIF_GrossAnatomy:birnlex_1475 is_a: UBERON:0002912 ! marginal sulcus relationship: part_of UBERON:0002022 intersection_of: UBERON:0002912 ! marginal sulcus intersection_of: part_of UBERON:0002022 ! insula [Term] id: UBERON:0002714 name: rubrospinal tract alt_id: UBERON:NIF_GrossAnatomy_birnlex_1476-FMA_72640 def: "long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the red nucleus of the midbrain towards target cells in the spinal cord[GO]." [Wikipedia:Rubrospinal_tract] subset: uberon_slim synonym: "monakow's tract" EXACT [FMA:72640] synonym: "rubrospinal tract (monakow)" EXACT [NIF_GrossAnatomy:birnlex_1476] xref: FMA:72640 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Medulla_spinalis_-_tracts_-_English.svg/200px-Medulla_spinalis_-_tracts_-_English.svg.png xref: NIF_GrossAnatomy:birnlex_1476 xref: SCTID:369264001 is_a: UBERON:0002316 ! white matter is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002715 name: spinal trigeminal tract of medulla alt_id: UBERON:NIF_GrossAnatomy_birnlex_1477-FMA_72625 xref: FMA:72625 xref: NIF_GrossAnatomy:birnlex_1477 is_a: UBERON:0002316 ! white matter is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002716 name: collateral sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1480-FMA_83751 def: "The collateral fissure (or sulcus) is on the tentorial surface of the hemisphere and extends from near the occipital pole to within a short distance of the temporal pole. Behind, it lies below and lateral to the calcarine fissure, from which it is separated by the lingual gyrus; in front, it is situated between the hippocampal gyrus and the anterior part of the fusiform gyrus. [WP,unvetted]." [Wikipedia:Collateral_fissure] subset: uberon_slim synonym: "collateral fissure" EXACT [FMA:83751] synonym: "sulcus collateralis" EXACT [NIF_GrossAnatomy:birnlex_1480] xref: FMA:83751 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/93/Gray738.png/200px-Gray738.png xref: ncithesaurus:Collateral_Fissure xref: NIF_GrossAnatomy:birnlex_1480 xref: SCTID:279356006 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002717 name: rostral interstitial nucleus of medial longitudinal fasciculus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1481-FMA_72433 def: "The rostral interstitial nucleus of medial longitudinal fasciculus (riMLF) is a portion of the medial longitudinal fasciculus which controls vertical gaze. They project to the vestibular nuclei. [WP,unvetted]." [Wikipedia:Rostral_interstitial_nucleus_of_medial_longitudinal_fasciculus] subset: uberon_slim synonym: "rostral interstitial nucleus of mlf" EXACT [] xref: FMA:72433 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/90/Gray710.png/200px-Gray710.png xref: NIF_GrossAnatomy:birnlex_1481 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0007414 ! implied link automatically realized ! nucleus of midbrain tegmentum relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0002718 name: solitary tract alt_id: UBERON:NIF_GrossAnatomy_birnlex_1483-FMA_72619 def: "The solitary tract is a compact fiber bundle that extends longitudinally through the posterolateral region of the medulla. The solitary tract is surrounded by the nucleus of the solitary tract, and descends to the upper cervical segments of the spinal cord. [WP,unvetted]." [Wikipedia:Solitary_tract] subset: uberon_slim synonym: "respiratory bundle of Gierke" EXACT [] xref: BM:Me-ST xref: FMA:72619 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/93/Gray695.png/200px-Gray695.png xref: NIF_GrossAnatomy:birnlex_1483 is_a: UBERON:0002316 ! white matter is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002719 name: spino-olivary tract alt_id: UBERON:NIF_GrossAnatomy_birnlex_1484-FMA_72643 def: "The spino-olivary tract is located in the ventral funiculus of the spinal cord. This tract carries proprioception information from muscles and tendons as well as cutaneous impulses to the olivary nucleus. [WP,unvetted]." [Wikipedia:Spino-olivary_tract] subset: uberon_slim synonym: "helweg's tract" EXACT [FMA:72643] xref: FMA:72643 xref: NIF_GrossAnatomy:birnlex_1484 xref: SCTID:362607001 is_a: UBERON:0002316 ! white matter is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002720 name: mammillary peduncle alt_id: UBERON:NIF_GrossAnatomy_birnlex_1486-FMA_62061 synonym: "peduncle of mammillary body" EXACT [FMA:62061] xref: FMA:62061 xref: NIF_GrossAnatomy:birnlex_1486 xref: SCTID:369146004 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0002721 name: lateral sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1487-FMA_77801 def: "The lateral sulcus (also called Sylvian fissure or lateral fissure) is one of the most prominent structures of the human brain. [WP,unvetted]." [Wikipedia:Lateral_sulcus] subset: uberon_slim synonym: "fissura lateralis" EXACT [NIF_GrossAnatomy:birnlex_1487] synonym: "fissura lateralis cerebri" EXACT [NIF_GrossAnatomy:birnlex_1487] synonym: "fissura lateralis cerebri (sylvii)" EXACT [NIF_GrossAnatomy:birnlex_1487] synonym: "fissura transversa cerebri" EXACT [FMA:77801, FMA:TA] synonym: "fissure of sylvius" EXACT [] synonym: "lateral cerebral fissure" EXACT [FMA:77801] synonym: "lateral cerebral sulcus" EXACT [FMA:77801] synonym: "lateral fissure" EXACT [FMA:77801] synonym: "lateral fissure of sylvius" EXACT [] synonym: "sulcus lateralis" EXACT [NIF_GrossAnatomy:birnlex_1487] synonym: "sulcus lateralis cerebri" EXACT [FMA:77801, FMA:TA] synonym: "sylvian fissure" EXACT [NIF_GrossAnatomy:birnlex_1487] synonym: "transverse cerebral fissure" EXACT [FMA:77801] xref: BM:Tel-Cx-LS xref: FMA:77801 xref: ncithesaurus:Fissure_of_Sylvius xref: NIF_GrossAnatomy:birnlex_1487 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002722 name: trochlear nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1488-FMA_54518 def: "The nucleus of the trochlear nerve is located in the midbrain, at the level of the inferior colliculus. It is a motor nucleus, so located near the midline. Oddly, fibers from the trochlear nucleus cross over in the midbrain at the superior medullary velum and exit posteriorly, (this is the only cranial nerve to do so). The nerve then goes around the midbrain, and is visible coming out the sides. [WP,unvetted]." [Wikipedia:Trochlear_nucleus] subset: uberon_slim subset: vertebrate_core synonym: "fourth cranial nerve nucleus" EXACT [FMA:54518] synonym: "motor nucleus IV" EXACT [ZFA:0000450] synonym: "nIV" EXACT [ZFA:0000450] synonym: "nucleus nervi trochlearis" EXACT [FMA:54518, FMA:TA] synonym: "nucleus of trochlear nerve" EXACT [FMA:54518] synonym: "trochlear IV nucleus" EXACT [MA:0001075] synonym: "trochlear motor nucleus" EXACT [ZFA:0000450] xref: ABA:IV xref: BM:MB-IV xref: EV:0100251 xref: FMA:54518 xref: http://upload.wikimedia.org/wikipedia/en/thumb/c/c6/Drn.png/200px-Drn.png xref: MA:0001075 xref: NIF_GrossAnatomy:birnlex_1488 xref: SCTID:280163001 xref: ZFA:0000450 is_a: UBERON:0000126 ! cranial nerve nucleus is_a: UBERON:0007414 ! implied link automatically realized ! nucleus of midbrain tegmentum relationship: continuous_with UBERON:0001644 ! trochlear nerve relationship: part_of UBERON:0001943 ! midbrain tegmentum relationship: spatially_disjoint_from UBERON:0001715 {source="ABA"} ! oculomotor nuclear complex relationship: spatially_disjoint_from UBERON:0001944 {source="ABA"} ! pretectal region relationship: spatially_disjoint_from UBERON:0001947 {source="ABA"} ! red nucleus relationship: spatially_disjoint_from UBERON:0001966 {source="ABA"} ! substantia nigra pars reticulata relationship: spatially_disjoint_from UBERON:0002141 {source="ABA"} ! parvocellular oculomotor nucleus relationship: spatially_disjoint_from UBERON:0002438 {source="ABA"} ! ventral tegmental nucleus relationship: spatially_disjoint_from UBERON:0002691 {source="ABA"} ! ventral tegmental area relationship: spatially_disjoint_from UBERON:0002696 {source="ABA"} ! cuneiform nucleus relationship: spatially_disjoint_from UBERON:0002995 {source="ABA"} ! substantia nigra pars lateralis relationship: spatially_disjoint_from UBERON:0003040 {source="ABA"} ! central gray substance of midbrain [Term] id: UBERON:0002723 name: mammillary princeps fasciculus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1492-FMA_62057 synonym: "principal mammillary fasciculus" EXACT [FMA:62057] synonym: "principal mammillary tract" EXACT [NIF_GrossAnatomy:birnlex_1492] synonym: "principle mamillary fasciculus" EXACT [FMA:62057] xref: FMA:62057 xref: NIF_GrossAnatomy:birnlex_1492 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0002724 name: limen of insula alt_id: UBERON:NIF_GrossAnatomy_birnlex_1493-FMA_75266 synonym: "angulus gyri olfactorii lateralis" EXACT [FMA:75266] synonym: "gyrus ambiens (noback)" EXACT [NIF_GrossAnatomy:birnlex_1493] synonym: "insula limen" EXACT [FMA:75266] synonym: "limen insulae" EXACT [NIF_GrossAnatomy:birnlex_1493] xref: FMA:75266 xref: NIF_GrossAnatomy:birnlex_1493 xref: SCTID:369215009 is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0002725 name: mammillotegmental fasciculus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1497-FMA_62058 synonym: "gudden tract" EXACT [FMA:62058] synonym: "mammillotegmental tract" EXACT [FMA:62058] synonym: "mammillotegmental tract of hypothalamus" EXACT [NIF_GrossAnatomy:birnlex_1497] synonym: "von Gudden's tract" EXACT [FMA:62058] xref: FMA:62058 xref: NIF_GrossAnatomy:birnlex_1497 xref: SCTID:369140005 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0002726 name: cervical spinal cord alt_id: UBERON:NIF_GrossAnatomy_birnlex_1499-FMA_71166 synonym: "cervical segment of spinal cord" EXACT [FMA:71166] synonym: "cervical segments of spinal cord [1-8]" EXACT [FMA:71166] synonym: "cervical spinal cord" EXACT [FMA:71166] synonym: "segmenta cervicalia medullae spinalis [1-8" EXACT [FMA:71166, FMA:TA] xref: FMA:71166 xref: ncithesaurus:Cervical_Spinal_Cord xref: NIF_GrossAnatomy:birnlex_1499 xref: SCTID:180960003 is_a: UBERON:0005844 ! implied link automatically realized ! spinal cord segment relationship: adjacent_to UBERON:0005434 intersection_of: UBERON:0005844 ! spinal cord segment intersection_of: adjacent_to UBERON:0005434 ! cervical region [Term] id: UBERON:0002727 name: medial medullary lamina alt_id: UBERON:NIF_GrossAnatomy_birnlex_1501-FMA_62470 synonym: "inner medullary lamina" EXACT [FMA:62470] synonym: "internal medullary lamina of corpus striatum" EXACT [FMA:62470] synonym: "internal medullary lamina of globus pallidus" EXACT [FMA:62470] synonym: "internal medullary lamina of lentiform nucleus" EXACT [FMA:62470] synonym: "lamina medullaris interna corporis striati" EXACT [FMA:62470, FMA:TA] synonym: "lamina medullaris medialis corporis striati" EXACT [FMA:62470, FMA:TA] synonym: "medial medullary lamina" EXACT [FMA:62470] synonym: "medial medullary lamina of corpus striatum" EXACT [FMA:62470] synonym: "medial medullary lamina of globus pallidus" EXACT [FMA:62470] synonym: "medial medullary lamina of pallidum" EXACT [FMA:62470] synonym: "medial medullary stria" EXACT [FMA:62470] xref: BTO:0002251 xref: FMA:62470 xref: NIF_GrossAnatomy:birnlex_1501 xref: SCTID:369205003 is_a: UBERON:0002316 ! white matter is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter relationship: part_of UBERON:0001875 ! globus pallidus [Term] id: UBERON:0002728 name: entorhinal area alt_id: UBERON:NIF_GrossAnatomy_birnlex_1508-FMA_72356 def: "Component of the temporal lobe on the mesial surface. The rostral and caudal boundaries of the entorhinal cortex are the rostral end of the collateral sulcus and the caudal end of the amygdala respectively. The medial boundary is the medial aspect of the temporal lobe and the lateral boundary is the collateral sulcus. (DK)." [NIF_GrossAnatomy:birnlex_1508, Wikipedia:Entorhinal_cortex] comment: todo - check area vs complex. ABA:ENT this is part of the hippocampal formation via retrohippocampal region subset: uberon_slim synonym: "Brodmann's area 28" RELATED [BTO:0002650] synonym: "entorhinal cortex" EXACT [NIF_GrossAnatomy:birnlex_1508] xref: ABA:ENT xref: BM:Tel-Cx-ENT xref: BTO:0002650 xref: BTO:0004345 xref: EFO:0001920 xref: FMA:72356 xref: GAID:636 xref: MESH:A.08.186.211.577.710.225 xref: NIF_GrossAnatomy:birnlex_1508 xref: SCTID:369099007 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0002973 {source="FMA"} ! parahippocampal gyrus relationship: part_of UBERON:0004725 {source="BTO"} ! piriform cortex relationship: spatially_disjoint_from UBERON:0001953 {source="ABA"} ! presubiculum relationship: spatially_disjoint_from UBERON:0002191 {source="ABA"} ! subiculum relationship: spatially_disjoint_from UBERON:0004683 {source="ABA"} ! parasubiculum [Term] id: UBERON:0002729 name: claustral amygdaloid area alt_id: UBERON:NIF_GrossAnatomy_birnlex_1515-FMA_61869 synonym: "claustrum diffusa" EXACT [FMA:61869] synonym: "claustrum parvum" EXACT [FMA:61869] synonym: "ventral claustrum" EXACT [FMA:61869] synonym: "ventral portion of claustrum" EXACT [FMA:61869] xref: FMA:61869 xref: NIF_GrossAnatomy:birnlex_1515 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001876 ! amygdala [Term] id: UBERON:0002730 name: regional part of thalamus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1517-FMA_67705 def: "A regional part of brain that is part of a thalamus [Obol]." [OBOL:automatic] synonym: "anatomical structure of brain of dorsal thalamus" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of dorsal thalamus (anthoney)" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of thalamus" EXACT [OBOL:automatic] synonym: "biological structure of brain of dorsal thalamus" EXACT [OBOL:automatic] synonym: "biological structure of brain of dorsal thalamus (anthoney)" EXACT [OBOL:automatic] synonym: "biological structure of brain of thalamus" EXACT [OBOL:automatic] synonym: "brain anatomical structure of dorsal thalamus" EXACT [OBOL:automatic] synonym: "brain anatomical structure of dorsal thalamus (anthoney)" EXACT [OBOL:automatic] synonym: "brain anatomical structure of thalamus" EXACT [OBOL:automatic] synonym: "brain biological structure of dorsal thalamus" EXACT [OBOL:automatic] synonym: "brain biological structure of dorsal thalamus (anthoney)" EXACT [OBOL:automatic] synonym: "brain biological structure of thalamus" EXACT [OBOL:automatic] synonym: "dorsal thalamus (anthoney) anatomical structure of brain" EXACT [OBOL:automatic] synonym: "dorsal thalamus (anthoney) biological structure of brain" EXACT [OBOL:automatic] synonym: "dorsal thalamus (anthoney) brain anatomical structure" EXACT [OBOL:automatic] synonym: "dorsal thalamus (anthoney) brain biological structure" EXACT [OBOL:automatic] synonym: "dorsal thalamus (anthoney) neuraxis segment" EXACT [OBOL:automatic] synonym: "dorsal thalamus (anthoney) regional part of brain" EXACT [OBOL:automatic] synonym: "dorsal thalamus (anthoney) segment of brain" EXACT [OBOL:automatic] synonym: "dorsal thalamus anatomical structure of brain" EXACT [OBOL:automatic] synonym: "dorsal thalamus biological structure of brain" EXACT [OBOL:automatic] synonym: "dorsal thalamus brain anatomical structure" EXACT [OBOL:automatic] synonym: "dorsal thalamus brain biological structure" EXACT [OBOL:automatic] synonym: "dorsal thalamus neuraxis segment" EXACT [OBOL:automatic] synonym: "dorsal thalamus regional part of brain" EXACT [OBOL:automatic] synonym: "dorsal thalamus segment of brain" EXACT [OBOL:automatic] synonym: "neuraxis segment of dorsal thalamus" EXACT [OBOL:automatic] synonym: "neuraxis segment of dorsal thalamus (anthoney)" EXACT [OBOL:automatic] synonym: "neuraxis segment of thalamus" EXACT [OBOL:automatic] synonym: "regional part of brain of dorsal thalamus" EXACT [OBOL:automatic] synonym: "regional part of brain of dorsal thalamus (anthoney)" EXACT [OBOL:automatic] synonym: "regional part of brain of thalamus" EXACT [OBOL:automatic] synonym: "segment of brain of dorsal thalamus" EXACT [OBOL:automatic] synonym: "segment of brain of dorsal thalamus (anthoney)" EXACT [OBOL:automatic] synonym: "segment of brain of thalamus" EXACT [OBOL:automatic] synonym: "segment of thalamus" EXACT [NIF_GrossAnatomy:birnlex_1517] synonym: "thalamus anatomical structure of brain" EXACT [OBOL:automatic] synonym: "thalamus biological structure of brain" EXACT [OBOL:automatic] synonym: "thalamus brain anatomical structure" EXACT [OBOL:automatic] synonym: "thalamus brain biological structure" EXACT [OBOL:automatic] synonym: "thalamus neuraxis segment" EXACT [OBOL:automatic] synonym: "thalamus regional part of brain" EXACT [OBOL:automatic] synonym: "thalamus segment" EXACT [FMA:67705] synonym: "thalamus segment of brain" EXACT [OBOL:automatic] xref: FMA:67705 xref: NIF_GrossAnatomy:birnlex_1517 is_a: UBERON:0002784 ! regional part of diencephalon relationship: part_of UBERON:0001897 intersection_of: UBERON:0002616 ! regional part of brain intersection_of: part_of UBERON:0001897 ! thalamus [Term] id: UBERON:0002731 name: vestibulocochlear nerve root alt_id: UBERON:NIF_GrossAnatomy_birnlex_1519-FMA_72499 synonym: "central part of vestibulocochlear nerve" EXACT [FMA:72499] synonym: "statoacoustic nerve fibers" EXACT [FMA:72499] synonym: "vestibulocochlear nerve fibers" EXACT [FMA:72499] synonym: "vestibulocochlear nerve roots" EXACT [FMA:72499] synonym: "vestibulocochlear nerve tract" EXACT [FMA:72499] xref: FMA:72499 xref: NIF_GrossAnatomy:birnlex_1519 is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0002732 name: longitudinal pontine fibers alt_id: UBERON:NIF_GrossAnatomy_birnlex_1523-FMA_72513 synonym: "fibrae pontis longitudinales" EXACT [FMA:72513, FMA:TA] synonym: "longitudinal fasciculus of the pons" EXACT [FMA:72513] synonym: "longitudinal pontine fibers" EXACT [FMA:72513] synonym: "longitudinal pontine fibres" EXACT [FMA:72513] synonym: "longitudinal pontine tract" EXACT [FMA:72513] xref: FMA:72513 xref: NIF_GrossAnatomy:birnlex_1523 xref: SCTID:361544009 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0002733 name: intralaminar nuclear group alt_id: UBERON:NIF_GrossAnatomy_birnlex_1530-FMA_62021 def: "The intralaminar nucleus is a nucleus of the thalamus that contains the following nuclei: central lateral centromedian (or 'central medial') paracentral parafascicular. Some sources also include a 'central dorsal' nucleus. [WP,unvetted]." [Wikipedia:Intralaminar_thalamic_nuclei] subset: uberon_slim synonym: "intralaminar nuclear group" EXACT [FMA:62021] synonym: "intralaminar nuclear group of thalamus" EXACT [FMA:62021] synonym: "intralaminar nuclei of thalamus" EXACT [FMA:62021] synonym: "intralaminar thalamic nuclei" EXACT [FMA:62021] synonym: "nonspecific thalamic system" EXACT [FMA:62021] synonym: "nuclei intralaminares (thalami)" EXACT [NIF_GrossAnatomy:birnlex_1530] synonym: "nuclei intralaminares thalami" EXACT [FMA:62021, FMA:TA] xref: ABA:ILM xref: FMA:62021 xref: GAID:660 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/ba/Thalmus.png/200px-Thalmus.png xref: MESH:A.08.186.211.730.385.826.701.460 xref: NIF_GrossAnatomy:birnlex_1530 xref: SCTID:279159009 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter is_a: UBERON:0007692 ! implied link automatically realized ! nucleus of thalamus relationship: part_of UBERON:0001897 ! thalamus relationship: spatially_disjoint_from UBERON:0001899 {source="ABA"} ! epithalamus relationship: spatially_disjoint_from UBERON:0001903 {source="ABA"} ! thalamic reticular nucleus relationship: spatially_disjoint_from UBERON:0002736 {source="ABA"} ! lateral nuclear group [Term] id: UBERON:0002734 name: superior temporal sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1534-FMA_83783 synonym: "parallel sulcus" EXACT [FMA:83783] synonym: "sulcus t1" EXACT [FMA:83783] synonym: "superior temporal fissure" EXACT [FMA:83783] xref: BM:Tel-Cx-STS xref: FMA:83783 xref: ncithesaurus:Superior_Temporal_Sulcus xref: NIF_GrossAnatomy:birnlex_1534 xref: SCTID:279344005 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002735 name: transverse pontine fibers alt_id: UBERON:NIF_GrossAnatomy_birnlex_1535-FMA_72514 synonym: "fibrae pontis transversae" EXACT [FMA:72514, FMA:TA] synonym: "superficial transverse fibers of pons" EXACT [FMA:72514] synonym: "transverse fibers of pons" EXACT [FMA:72514] synonym: "transverse pontine fibers" EXACT [FMA:72514] synonym: "transverse pontine fibres" EXACT [FMA:72514] synonym: "transverse pontine tract" EXACT [FMA:72514] xref: FMA:72514 xref: NIF_GrossAnatomy:birnlex_1535 xref: SCTID:79836003 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0002736 name: lateral nuclear group alt_id: UBERON:NIF_GrossAnatomy_birnlex_1537-FMA_62174 def: "The lateral nuclear group is a collection of nuclei on the lateral side of the thalamus. According to MeSH, it consists of the following: lateral dorsal nucleus lateral posterior nucleus pulvinar [WP,unvetted]." [Wikipedia:Lateral_nuclear_group] subset: uberon_slim synonym: "lateral group of the dorsal thalamus" EXACT [NIF_GrossAnatomy:birnlex_1537] synonym: "lateral nuclear group" EXACT [FMA:62174] synonym: "lateral nuclear group of thalamus" EXACT [FMA:62174] synonym: "lateral nucleus of thalamus" EXACT [FMA:62174] synonym: "lateral thalamic nuclei" EXACT [FMA:62174] synonym: "lateral thalamic nucleus" EXACT [NIF_GrossAnatomy:birnlex_1537] synonym: "nuclei laterales thalami" EXACT [NIF_GrossAnatomy:birnlex_1537] synonym: "nucleus lateralis thalami" EXACT [NIF_GrossAnatomy:birnlex_1537] xref: ABA:LAT xref: EV:0100210 xref: FMA:62174 xref: GAID:661 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/ThalamicNuclei.png/200px-ThalamicNuclei.png xref: MESH:A.08.186.211.730.385.826.701.485 xref: NIF_GrossAnatomy:birnlex_1537 xref: SCTID:279126006 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter is_a: UBERON:0007692 ! implied link automatically realized ! nucleus of thalamus relationship: part_of UBERON:0001897 ! thalamus relationship: spatially_disjoint_from UBERON:0001899 {source="ABA"} ! epithalamus relationship: spatially_disjoint_from UBERON:0001903 {source="ABA"} ! thalamic reticular nucleus relationship: spatially_disjoint_from UBERON:0002733 {source="ABA"} ! intralaminar nuclear group [Term] id: UBERON:0002737 name: lateral inferior limiting sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1540-FMA_74523 xref: FMA:74523 xref: NIF_GrossAnatomy:birnlex_1540 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002738 name: isthmus of cingulate gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1541-FMA_62502 synonym: "cingulate gyrus isthmus" EXACT [FMA:62502] synonym: "isthmus of fornicate gyrus" EXACT [FMA:62502] synonym: "isthmus of limbic lobe" EXACT [FMA:62502] xref: FMA:62502 xref: NIF_GrossAnatomy:birnlex_1541 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0002967 ! cingulate gyrus [Term] id: UBERON:0002739 name: medial dorsal nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1543-FMA_62156 def: "The medial dorsal nucleus (or dorsomedial nucleus of thalamus) is a large nucleus in the thalamus. It receives inputs from the Pre-Frontal Cortex and the Limbic System and in turn relays them to the Pre-Frontal Association Cortex. As a result, it plays a crucial role in attention, planning, organization, abstract thinking, multi-tasking and active memory. The connections of the medial dorsal nucleus have even been used to delineate the prefrontal cortex of the Göttingen minipig brain. By stereology the number of brain cells in the region has been estimated to around 6.43 million neurons in the adult human brain and 36.3 million glial cells, and with the newborn having quite different numbers: around 11.2 million neurons and 10.6 million glial cells. Lesions of the medial dorsal nucleus have been associated with Wernicke's encephalopathy [WP,unvetted]." [Wikipedia:Medial_dorsal_nucleus] subset: uberon_slim synonym: "dorsal medial nucleus of thalamus" EXACT [FMA:62156] synonym: "dorsomedial nuclear group" EXACT [FMA:62156] synonym: "dorsomedial nucleus" EXACT [FMA:62156] synonym: "dorsomedial nucleus of thalamus" EXACT [FMA:62156] synonym: "medial dorsal nucleus" EXACT [FMA:62156] synonym: "medial dorsal nucleus of thalamus" EXACT [FMA:62156] synonym: "medial dorsal thalamic nucleus" EXACT [NIF_GrossAnatomy:birnlex_1543] synonym: "medial nuclear group" EXACT [FMA:62156] synonym: "medial nuclear group of thalamus" EXACT [FMA:62156] synonym: "medial thalamic nuclei" EXACT [FMA:62156] synonym: "medial thalamic nucleus" EXACT [FMA:62156] synonym: "mediodorsal nucleus" EXACT [FMA:62156] synonym: "mediodorsal nucleus of thalamus" EXACT [DHB:MD] synonym: "mediodorsal thalamic nucleus" EXACT [FMA:62156] synonym: "nucleus dorsomedialis thalami" EXACT [NIF_GrossAnatomy:birnlex_1543] synonym: "nucleus medialis dorsalis" EXACT [NIF_GrossAnatomy:birnlex_1543] synonym: "nucleus mediodorsalis thalami" RELATED [BTO:0002453] xref: ABA:MD xref: BM:Die-Th-MD xref: BTO:0002453 xref: EV:0100200 xref: FMA:62156 xref: GAID:663 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/ThalamicNuclei.png/200px-ThalamicNuclei.png xref: MESH:A.08.186.211.730.385.826.701.490 xref: ncithesaurus:Dorsomedial_Nucleus_of_the_Thalamus xref: NIF_GrossAnatomy:birnlex_1543 xref: SCTID:279149008 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter is_a: UBERON:0007692 ! implied link automatically realized ! nucleus of thalamus relationship: part_of UBERON:0001897 ! thalamus relationship: spatially_disjoint_from UBERON:0003031 {source="ABA"} ! submedial nucleus [Term] id: UBERON:0002740 name: posterior cingulate gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1546-FMA_61924 def: "The posterior cingulate cortex is the backmost part of the cingulate cortex, lying behind the anterior cingulate cortex. This is the upper part of the 'limbic lobe'. The cingulate cortex is made up of an area around the midline of the brain. Surrounding areas include the retrosplenial cortex and the precuneus. Cytoarchitectonically posterior cingulate cortex is associated with Brodmann areas 23 and 31. [WP,unvetted]." [Wikipedia:Posterior_cingulate_gyrus] subset: uberon_slim xref: FMA:61924 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Gray727.svg/200px-Gray727.svg.png xref: NIF_GrossAnatomy:birnlex_1546 is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0002967 ! cingulate gyrus [Term] id: UBERON:0002741 name: diagonal band alt_id: UBERON:NIF_GrossAnatomy_birnlex_1551-FMA_61973 def: "The diagonal band of Broca consists of fibers that are said to arise in the parolfactory area, the gyrus subcallosus and the anterior perforated substance, and course backward in the longitudinal striae to the dentate gyrus and the hippocampal region. This is a cholinergic bundle of nerve fibers posterior to the anterior perforated substance. It interconnects the paraterminal gyrus in the septal area with the hippocampus and lateral olfactory area. Along with the Septum Pellucidum the Diagonal Band of Broca is believed to be involved in the generation of theta waves in the hippocampus. [WP,unvetted]." [Wikipedia:Diagonal_band_of_Broca] subset: uberon_slim synonym: "band of Broca" RELATED [BTO:0002445] synonym: "bandaletta diagonalis (Broca)" RELATED [BTO:0002445] synonym: "broca's diagonal band" EXACT [FMA:61973] synonym: "broca's diagonal gyrus" EXACT [FMA:61973] synonym: "diagonal band of broca" EXACT [] synonym: "diagonal gyrus" EXACT [FMA:61973] synonym: "olfactory fasciculus" EXACT [FMA:61973] synonym: "olfactory radiations of zuckerkandl" EXACT [] synonym: "stria diagonalis" RELATED [BTO:0002445] synonym: "stria diagonalis (Broca)" RELATED [BTO:0002445] xref: BTO:0002445 xref: FMA:61973 xref: GAID:684 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d7/Gray724.png/200px-Gray724.png xref: MESH:A.08.186.211.730.885.380 xref: NIF_GrossAnatomy:birnlex_1551 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0002742 name: lamina of septum pellucidum alt_id: UBERON:NIF_GrossAnatomy_birnlex_1554-FMA_62472 def: "One of two layers of both white and gray matter of the septum pellucidum. During fetal development there is a space between the two laminae called the cavum septum pellucidum which, in ninety per cent of cases, disappears during infancy." [Wikipedia:Septum_pellucidum#Layers] comment: editor note synonym: "laminae septi pellucidi" EXACT PLURAL [] synonym: "septum pellucidum lamina" EXACT [FMA:62472] xref: FMA:62472 xref: NIF_GrossAnatomy:birnlex_1554 xref: SCTID:12164006 is_a: UBERON:0002316 ! white matter is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter relationship: part_of UBERON:0004714 {source="FMA"} ! septum pellucidum [Term] id: UBERON:0002743 name: basal forebrain alt_id: UBERON:NIF_GrossAnatomy_birnlex_1560-FMA_77700 def: "The basal forebrain is a collection of structures located ventrally to the striatum. It is considered to be the major cholinergic output of the CNS. It includes a group of structures that lie near the bottom of the front of the brain, including the nucleus basalis, diagonal band of Broca, and medial septal nuclei. These structures are important in the production of acetylcholine, which is then distributed widely throughout the brain. Acetylcholine affects the ability of brain cells to transmit information to one another, and also encourages plasticity, or learning. Thus, damage to the basal forebrain can reduce the amount of acetylcholine in the brain and impair learning. This may be one reason why basal forebrain damage can result in memory impairments such as amnesia and confabulation. One common cause of basal forebrain damage is aneurysm of the anterior communicating artery. Research, conducted by investigators from Children's Hospital Boston and the University of Helsinki, ties together previous observations about sleep and finds that nitric oxide production in the basal forebrain is both necessary and sufficient to produce sleep. This structure is defined, in part, as the place where adenosine acts on A1 receptors of cholinergic neurons. This results in hyperpolarization of cholinergic neurons, which inhibits the release of acetylcholine. Acetylcholine is known to promote wakefulness in the basal forebrain. Inhibition of acetylcholine release in the basal forebrain by adenosine causes slow wave sleep. The basal forebrain and adjacent areas are a focus for sleep research. Stimulating the basal forebrain gives rise to EEG sychrony and sleep. [WP,unvetted]." [Wikipedia:Basal_forebrain] subset: uberon_slim xref: BM:Tel-BF xref: BTO:0002444 xref: FMA:77700 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a4/Basal_Forebrain_Monakhos_2007.png/200px-Basal_Forebrain_Monakhos_2007.png xref: NIF_GrossAnatomy:birnlex_1560 is_a: UBERON:0002616 ! regional part of brain [Term] id: UBERON:0002744 name: hilum of dentate nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1561-FMA_72548 synonym: "dentate nuclear hilum" EXACT [FMA:72548] xref: FMA:72548 xref: NIF_GrossAnatomy:birnlex_1561 xref: SCTID:369055003 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0002745 name: ventral amygdalofugal projection alt_id: UBERON:NIF_GrossAnatomy_birnlex_1563-FMA_61977 synonym: "ventral amygdalofugal pathway" EXACT [NIF_GrossAnatomy:birnlex_1563] xref: FMA:61977 xref: NIF_GrossAnatomy:birnlex_1563 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0002746 name: intermediate periventricular nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1564-FMA_62328 synonym: "intermediate periventricular nucleus of hypothalamus" EXACT [FMA:62328] synonym: "periventricular nucleus at the tuberal level" EXACT [FMA:62328] xref: FMA:62328 xref: NIF_GrossAnatomy:birnlex_1564 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter [Term] id: UBERON:0002747 name: neodentate part of dentate nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1567-FMA_72539 synonym: "neodentate portion of dentate nucleus" EXACT [FMA:72539] xref: FMA:72539 xref: NIF_GrossAnatomy:birnlex_1567 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002946 ! implied link automatically realized ! regional part of cerebellum is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0002132 ! dentate nucleus [Term] id: UBERON:0002748 name: medial lemniscus of medulla alt_id: UBERON:NIF_GrossAnatomy_birnlex_1570-FMA_72621 def: "A medial lemniscus that is part of a medulla [Obol]." [OBOL:automatic] synonym: "medulla medial lemniscus" EXACT [OBOL:automatic] xref: FMA:72621 xref: NIF_GrossAnatomy:birnlex_1570 is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0003002 ! medial lemniscus relationship: part_of UBERON:0000958 intersection_of: UBERON:0003002 ! medial lemniscus intersection_of: part_of UBERON:0000958 ! medulla relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002749 name: regional part of cerebellar cortex alt_id: UBERON:NIF_GrossAnatomy_birnlex_1571-FMA_76924 def: "A regional part of brain that is part of a cerebellar cortex [Obol]." [OBOL:automatic] synonym: "anatomical structure of brain of cerebellar cortex" EXACT [OBOL:automatic] synonym: "biological structure of brain of cerebellar cortex" EXACT [OBOL:automatic] synonym: "brain anatomical structure of cerebellar cortex" EXACT [OBOL:automatic] synonym: "brain biological structure of cerebellar cortex" EXACT [OBOL:automatic] synonym: "cerebellar cortex anatomical structure of brain" EXACT [OBOL:automatic] synonym: "cerebellar cortex biological structure of brain" EXACT [OBOL:automatic] synonym: "cerebellar cortex brain anatomical structure" EXACT [OBOL:automatic] synonym: "cerebellar cortex brain biological structure" EXACT [OBOL:automatic] synonym: "cerebellar cortex neuraxis segment" EXACT [OBOL:automatic] synonym: "cerebellar cortex regional part of brain" EXACT [OBOL:automatic] synonym: "cerebellar cortex segment of brain" EXACT [OBOL:automatic] synonym: "cerebellar cortical segment" EXACT [FMA:76924] synonym: "neuraxis segment of cerebellar cortex" EXACT [OBOL:automatic] synonym: "regional part of brain of cerebellar cortex" EXACT [OBOL:automatic] synonym: "segment of brain of cerebellar cortex" EXACT [OBOL:automatic] synonym: "segment of cerebellar cortex" EXACT [NIF_GrossAnatomy:birnlex_1571] xref: FMA:76924 xref: NIF_GrossAnatomy:birnlex_1571 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0002946 ! implied link automatically realized ! regional part of cerebellum is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0002129 intersection_of: UBERON:0002616 ! regional part of brain intersection_of: part_of UBERON:0002129 ! cerebellar cortex [Term] id: UBERON:0002750 name: medial longitudinal fasciculus of medulla alt_id: UBERON:NIF_GrossAnatomy_birnlex_1574-FMA_72618 def: "A medial longitudinal fasciculus that is part of a medulla [Obol]." [OBOL:automatic] synonym: "medulla medial longitudinal fasciculus" EXACT [OBOL:automatic] xref: FMA:72618 xref: NIF_GrossAnatomy:birnlex_1574 is_a: UBERON:0002309 ! medial longitudinal fasciculus is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata relationship: part_of UBERON:0000958 intersection_of: UBERON:0002309 ! medial longitudinal fasciculus intersection_of: part_of UBERON:0000958 ! medulla relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002751 name: inferior temporal gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1577-FMA_61907 def: "The inferior temporal gyrus is placed below the middle temporal sulcus, and is connected behind with the inferior occipital gyrus; it also extends around the infero-lateral border on to the inferior surface of the temporal lobe, where it is limited by the inferior sulcus. This region is one of the higher levels of the ventral stream of visual processing, associated with the representation of complex object features, such as global shape. It may also be involved in face perception. [WP,unvetted]." [Wikipedia:Inferior_temporal_gyrus] subset: uberon_slim synonym: "gyrus temporalis inferior" EXACT [NIF_GrossAnatomy:birnlex_1577] synonym: "lateral occipitotemporal gyrus (heimer-83)" EXACT [] xref: BM:Tel-ITG xref: FMA:61907 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/35/Gray726.png/200px-Gray726.png xref: ncithesaurus:Inferior_Temporal_Gyrus xref: NIF_GrossAnatomy:birnlex_1577 xref: SCTID:279191005 is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0001871 ! temporal lobe [Term] id: UBERON:0002752 name: olivocerebellar tract alt_id: UBERON:NIF_GrossAnatomy_birnlex_1579-FMA_72638 def: "The olivocerebellar tract (olivocerebellar fibers) leaves the olivary nucleus and pass out through the hilum and decussate with those from the opposite olive in the raphé, then as internal arcuate fibers they pass partly through and partly around the opposite olive and enter the inferior peduncle to be distributed to the cerebellar hemisphere of the opposite side from which they arise. They terminate directly on Purkinje cells as the climbing fiber input system. [WP,unvetted]." [Wikipedia:Olivocerebellar_tract] subset: uberon_slim xref: FMA:72638 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/93/Gray695.png/200px-Gray695.png xref: NIF_GrossAnatomy:birnlex_1579 is_a: UBERON:0002316 ! white matter is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002753 name: posterior spinocerebellar tract alt_id: UBERON:NIF_GrossAnatomy_birnlex_1585-FMA_72641 def: "The dorsal spinocerebellar tract (posterior spinocerebellar tract, Flechsig's fasciculus, Flechsig's tract) conveys proprioceptive information from the body to the cerebellum. It is part of the somatosensory system and runs in parallel with the ventral spinocerebellar tract. Proprioceptive information is taken to the via central processes of dorsal root ganglia (first order neurons). These central processes travel through the dorsal horn where they synapse with second order neurons of Clarke's nucleus. Axon fibers from Clarke's Nucleus convey this proprioceptive information in the spinal cord in the peripheral region of the posteriolateral funiculus ipsilaterally until it reaches the cerebellum, where unconscious proprioceptive information is processed. This tract involves two neurons and ends up on the same side of the body. [WP,unvetted]." [Wikipedia:Posterior_spinocerebellar_tract] subset: uberon_slim synonym: "dorsal spinocerebellar tract" EXACT [FMA:72641] synonym: "flechsig's tract" EXACT [FMA:72641] xref: BM:DSCT xref: FMA:72641 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Medulla_spinalis_-_tracts_-_English.svg/200px-Medulla_spinalis_-_tracts_-_English.svg.png xref: NIF_GrossAnatomy:birnlex_1585 xref: SCTID:369284002 is_a: UBERON:0001018 ! axon tract is_a: UBERON:0002316 ! white matter relationship: part_of UBERON:0005413 ! spinocerebellar tract [Term] id: UBERON:0002754 name: predorsal bundle alt_id: UBERON:NIF_GrossAnatomy_birnlex_1590-FMA_72614 synonym: "predorsal bundle of edinger" EXACT [] synonym: "predorsal fasciculus" EXACT [FMA:72614] synonym: "tectospinal fibers" EXACT [FMA:72614] xref: FMA:72614 xref: NIF_GrossAnatomy:birnlex_1590 is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0005838 ! fasciculus of brain relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002755 name: pyramidal decussation alt_id: UBERON:NIF_GrossAnatomy_birnlex_1594-FMA_72633 def: "When these pyramidal fibers are traced downward, it is found that some three-fifths or more of them leave the pyramids in successive bundles, and decussate in the anterior median fissure of the medulla oblongata, forming what is termed the pyramidal decussation or motor decussation. Having crossed the middle line, they pass down in the posterior part of the lateral funiculus as the lateral cerebrospinal fasciculus. [WP,unvetted]." [Wikipedia:Pyramidal_decussation] subset: uberon_slim synonym: "corticospinal decussation" EXACT [FMA:72633] synonym: "decussatio pyramidum" EXACT [FMA:72633, FMA:TA] synonym: "decussatio pyramidum medullae oblongatae" EXACT [FMA:72633, FMA:TA] synonym: "decussation of corticospinal tract" EXACT [FMA:72633] synonym: "decussation of pyramidal tract fibers" EXACT [FMA:72633] synonym: "decussation of pyramids" EXACT [FMA:72633] synonym: "decussation of pyramids of medulla" EXACT [FMA:72633] synonym: "decussation of the pyramidal tract" EXACT [NIF_GrossAnatomy:birnlex_1594] synonym: "motor decussation" EXACT [FMA:72633] synonym: "motor decussation of medulla" EXACT [FMA:72633] synonym: "pyramidal decussation (pourfour du petit)" EXACT [NIF_GrossAnatomy:birnlex_1594] xref: BM:Me-PyX xref: FMA:72633 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ac/Gray684.png/200px-Gray684.png xref: NIF_GrossAnatomy:birnlex_1594 xref: SCTID:369058001 is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter is_a: UBERON:0007418 ! decussation of neuraxis relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002756 name: anterior cingulate gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1603-FMA_61916 def: "The Anterior cingulate cortex (ACC) is the frontal part of the cingulate cortex, that resembles a 'collar' form around the corpus callosum, the fibrous bundle that relays neural signals between the right and left cerebral hemispheres of the brain. It includes both the ventral and dorsal areas of the cingulate cortex, and appears to play a role in a wide variety of autonomic functions, such as regulating blood pressure and heart rate, as well as rational cognitive functions, such as reward anticipation, decision-making, empathy and emotion. [WP,unvetted]." [Wikipedia:Anterior_cingulate_gyrus] subset: uberon_slim xref: FMA:61916 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/22/Gray727_anterior_cingulate_cortex.png/200px-Gray727_anterior_cingulate_cortex.png xref: NIF_GrossAnatomy:birnlex_1603 is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0002967 ! cingulate gyrus relationship: part_of UBERON:0009835 ! anterior cingulate cortex [Term] id: UBERON:0002757 name: regional part of epithalamus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1607-FMA_62013 def: "A regional part of brain that is part of a epithalamus [Obol]." [OBOL:automatic] synonym: "anatomical structure of brain of epithalamus" EXACT [OBOL:automatic] synonym: "biological structure of brain of epithalamus" EXACT [OBOL:automatic] synonym: "brain anatomical structure of epithalamus" EXACT [OBOL:automatic] synonym: "brain biological structure of epithalamus" EXACT [OBOL:automatic] synonym: "epithalamus anatomical structure of brain" EXACT [OBOL:automatic] synonym: "epithalamus biological structure of brain" EXACT [OBOL:automatic] synonym: "epithalamus brain anatomical structure" EXACT [OBOL:automatic] synonym: "epithalamus brain biological structure" EXACT [OBOL:automatic] synonym: "epithalamus neuraxis segment" EXACT [OBOL:automatic] synonym: "epithalamus regional part of brain" EXACT [OBOL:automatic] synonym: "epithalamus segment" EXACT [FMA:62013] synonym: "epithalamus segment of brain" EXACT [OBOL:automatic] synonym: "neuraxis segment of epithalamus" EXACT [OBOL:automatic] synonym: "regional part of brain of epithalamus" EXACT [OBOL:automatic] synonym: "segment of brain of epithalamus" EXACT [OBOL:automatic] synonym: "segment of epithalamus" EXACT [NIF_GrossAnatomy:birnlex_1607] xref: FMA:62013 xref: NIF_GrossAnatomy:birnlex_1607 is_a: UBERON:0002784 ! regional part of diencephalon relationship: part_of UBERON:0001899 intersection_of: UBERON:0002616 ! regional part of brain intersection_of: part_of UBERON:0001899 ! epithalamus [Term] id: UBERON:0002758 name: dorsal nucleus of medial geniculate body alt_id: UBERON:NIF_GrossAnatomy_birnlex_1608-FMA_62216 synonym: "dorsal nucleus of medial geniculate complex" EXACT [FMA:62216] synonym: "medial geniculate complex, dorsal part" EXACT [NIF_GrossAnatomy:birnlex_1608] synonym: "medial geniculate nucleus, dorsal part" EXACT [NIF_GrossAnatomy:birnlex_1608] synonym: "nucleus corporis geniculati medialis, pars dorsalis" EXACT [NIF_GrossAnatomy:birnlex_1608] synonym: "nucleus dorsalis coporis geniculati medialis" RELATED [BTO:0002673] synonym: "nucleus geniculatus medialis fibrosus (hassler)" EXACT [NIF_GrossAnatomy:birnlex_1608] synonym: "nucleus geniculatus medialis pars dorsalis" EXACT [NIF_GrossAnatomy:birnlex_1608] xref: ABA:MGd xref: BTO:0002673 xref: FMA:62216 xref: NIF_GrossAnatomy:birnlex_1608 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter is_a: UBERON:0006569 ! implied link automatically realized ! diencephalic nucleus relationship: part_of UBERON:0001927 ! medial geniculate body relationship: spatially_disjoint_from UBERON:0002759 {source="ABA"} ! magnocellular nucleus of medial geniculate body relationship: spatially_disjoint_from UBERON:0002985 {source="ABA"} ! ventral nucleus of medial geniculate body [Term] id: UBERON:0002759 name: magnocellular nucleus of medial geniculate body alt_id: UBERON:NIF_GrossAnatomy_birnlex_1612-FMA_62218 synonym: "corpus geniculatus mediale, pars magnocelluaris" EXACT [NIF_GrossAnatomy:birnlex_1612] synonym: "magnocelluar nucleus of medial geniculate complex" EXACT [NIF_GrossAnatomy:birnlex_1612] synonym: "medial division of medial geniculate body" EXACT [FMA:62218] synonym: "medial geniculate complex, medial part" EXACT [FMA:62218] synonym: "medial geniculate nucleus, medial part" EXACT [FMA:62218] synonym: "medial magnocellular nucleus of medial geniculate body" EXACT [FMA:62218] synonym: "medial nucleus of medial geniculate body" EXACT [FMA:62218] synonym: "nucleus corporis geniculati medialis, pars magnocelluaris" EXACT [NIF_GrossAnatomy:birnlex_1612] synonym: "nucleus geniculatus medialis magnocelluaris (hassler)" EXACT [NIF_GrossAnatomy:birnlex_1612] synonym: "nucleus geniculatus medialis, pars magnocelluaris" EXACT [NIF_GrossAnatomy:birnlex_1612] synonym: "nucleus medialis magnocellularis corporis geniculati medialis" RELATED [BTO:0002672] xref: ABA:MGm xref: BTO:0002672 xref: FMA:62218 xref: NIF_GrossAnatomy:birnlex_1612 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter is_a: UBERON:0006569 ! implied link automatically realized ! diencephalic nucleus relationship: part_of UBERON:0001927 ! medial geniculate body relationship: spatially_disjoint_from UBERON:0002758 {source="ABA"} ! dorsal nucleus of medial geniculate body relationship: spatially_disjoint_from UBERON:0002985 {source="ABA"} ! ventral nucleus of medial geniculate body [Term] id: UBERON:0002760 name: ventral corticospinal tract alt_id: UBERON:NIF_GrossAnatomy_birnlex_1618-FMA_72636 def: "The anterior corticospinal tract (also called the ventral corticospinal tract, medial corticospinal tract, direct pyramidal tract, or anterior cerebrospinal fasciculus) is a small bundle of descending fibers that connect the cerebral cortex to the spinal cord. It is usually small, varying inversely in size with the lateral corticospinal tract, which is the main part of the corticospinal tract. It lies close to the anterior median fissure, and is present only in the upper part of the medulla spinalis; gradually diminishing in size as it descends, it ends about the middle of the thoracic region. It consists of descending fibers which arise from cells in the motor area of the cerebral hemisphere of the same side, and which, as they run downward in the medulla spinalis, cross in succession through the anterior white commissure to the opposite side, where they end, either directly or indirectly, by arborizing around the motor neurons in the anterior column. A few of its fibers are said to pass to the lateral column of the same side and to the gray matter at the base of the posterior column. They conduct voluntary motor impulses from the precentral gyrus to the motor centers of the cord. [WP,unvetted]." [Wikipedia:Ventral_corticospinal_tract] subset: uberon_slim synonym: "anterior corticospinal tract" EXACT [FMA:72636] synonym: "anterior pyramidal tract" EXACT [FMA:72636] synonym: "anterior tract of turck" EXACT [] synonym: "bundle of turck" EXACT [] synonym: "column of turck" EXACT [] xref: FMA:72636 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Medulla_spinalis_-_tracts_-_English.svg/200px-Medulla_spinalis_-_tracts_-_English.svg.png xref: NIF_GrossAnatomy:birnlex_1618 xref: SCTID:369092003 is_a: UBERON:0002316 ! white matter is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002761 name: inferior frontal sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1619-FMA_83757 def: "The inferior frontal sulcus is a sulcus between the middle frontal gyrus and the inferior frontal gyrus. [WP,unvetted]." [Wikipedia:Inferior_frontal_sulcus] subset: uberon_slim synonym: "inferior frontal fissure" EXACT [FMA:83757] synonym: "sulcus f2" EXACT [FMA:83757] xref: FMA:83757 xref: ncithesaurus:Inferior_Frontal_Sulcus xref: NIF_GrossAnatomy:birnlex_1619 xref: SCTID:279343004 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002762 name: internal medullary lamina of thalamus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1621-FMA_62079 synonym: "internal medullary lamina" EXACT [FMA:62079] synonym: "internal medullary lamina of thalamus" EXACT [FMA:62079] synonym: "lamina medullaris medialis thalami" EXACT [FMA:62079, FMA:TA] xref: FMA:62079 xref: NIF_GrossAnatomy:birnlex_1621 xref: SCTID:369161003 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0002763 name: accessory medullary lamina alt_id: UBERON:NIF_GrossAnatomy_birnlex_1626-FMA_62471 synonym: "accessory medullar lamina of pallidum" EXACT [NIF_GrossAnatomy:birnlex_1626] synonym: "accessory medullary lamina" EXACT [FMA:62471] synonym: "accessory medullary lamina of corpus striatum" EXACT [FMA:62471] synonym: "accessory medullary lamina of globus pallidus" EXACT [FMA:62471] synonym: "incomplete medullary lamina of globus pallidus" EXACT [FMA:62471] synonym: "lamina medullaris accessoria corporis striati" EXACT [FMA:62471, FMA:TA] xref: FMA:62471 xref: NIF_GrossAnatomy:birnlex_1626 is_a: UBERON:0002316 ! white matter is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter relationship: part_of UBERON:0001875 ! globus pallidus [Term] id: UBERON:0002764 name: inferior precentral sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1627-FMA_83764 synonym: "inferior part of precentral fissure" EXACT [FMA:83764] synonym: "sulcus praecentralis inferior" EXACT [NIF_GrossAnatomy:birnlex_1627] synonym: "sulcus precentralis inferior" EXACT [NIF_GrossAnatomy:birnlex_1627] xref: FMA:83764 xref: NIF_GrossAnatomy:birnlex_1627 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002765 name: lateral medullary lamina alt_id: UBERON:NIF_GrossAnatomy_birnlex_1634-FMA_62469 synonym: "external medulary lamina of globus pallidus" EXACT [NIF_GrossAnatomy:birnlex_1634] synonym: "external medulary lamina of lentiform nucleus" EXACT [NIF_GrossAnatomy:birnlex_1634] synonym: "external medullary lamina of corpus striatum" EXACT [FMA:62469] synonym: "external medullary lamina of globus pallidus" EXACT [FMA:62469] synonym: "external medullary lamina of lentiform nucleus" EXACT [FMA:62469] synonym: "lamina medullaris externa corporis striati" EXACT [FMA:62469, FMA:TA] synonym: "lamina medullaris lateralis corporis striati" EXACT [FMA:62469, FMA:TA] synonym: "lateral medulary lamina of globus pallidus" EXACT [NIF_GrossAnatomy:birnlex_1634] synonym: "lateral medulary stria" EXACT [NIF_GrossAnatomy:birnlex_1634] synonym: "lateral medullary lamina" EXACT [FMA:62469] synonym: "lateral medullary lamina of corpus striatum" EXACT [FMA:62469] synonym: "lateral medullary lamina of globus pallidus" EXACT [FMA:62469] synonym: "lateral medullary lamina of pallidum" EXACT [FMA:62469] synonym: "lateral medullary stria" EXACT [FMA:62469] synonym: "medulary lamina of pallidum" EXACT [NIF_GrossAnatomy:birnlex_1634] synonym: "outer medulary lamina" EXACT [NIF_GrossAnatomy:birnlex_1634] synonym: "outer medullary lamina" EXACT [FMA:62469] xref: FMA:62469 xref: NIF_GrossAnatomy:birnlex_1634 xref: SCTID:369204004 is_a: UBERON:0002316 ! white matter is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter relationship: part_of UBERON:0001875 ! globus pallidus [Term] id: UBERON:0002766 name: fusiform gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1641-FMA_61908 def: "The fusiform gyrus is part of the temporal lobe. It is also known as the (discontinuous) occipitotemporal gyrus. Other sources have the fusiform gyrus above the occipitotemporal gyrus and underneath the parahippocampal gyrus. [WP,unvetted]." [Wikipedia:Fusiform_gyrus] subset: uberon_slim synonym: "gyrus occipitotemporalis lateralis" EXACT [FMA:61908, FMA:TA] synonym: "lateral occipitotemporal gyrus" EXACT [FMA:61908] synonym: "medial occipitotemporal gyrus-1 (heimer)" EXACT [] synonym: "occipitotemporal gyrus" EXACT [FMA:61908] xref: FMA:61908 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Gray727.svg/200px-Gray727.svg.png xref: NIF_GrossAnatomy:birnlex_1641 xref: SCTID:110678003 is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0001871 ! temporal lobe [Term] id: UBERON:0002767 name: inferior rostral sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1642-FMA_83767 synonym: "sulcus rostralis inferior" EXACT [NIF_GrossAnatomy:birnlex_1642] xref: FMA:83767 xref: NIF_GrossAnatomy:birnlex_1642 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002768 name: vestibulospinal tract alt_id: UBERON:NIF_GrossAnatomy_birnlex_1643-FMA_72646 def: "a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the vestibular nucleus of the pons towards target cells in the spinal cord[GO]." [Wikipedia:Vestibulospinal_tract] subset: uberon_slim subset: vertebrate_core synonym: "vestibulo-spinal tract" EXACT [ZFA:0000709] xref: FMA:72646 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Medulla_spinalis_-_tracts_-_English.svg/200px-Medulla_spinalis_-_tracts_-_English.svg.png xref: NIF_GrossAnatomy:birnlex_1643 xref: SCTID:369289007 xref: ZFA:0000709 is_a: UBERON:0002316 ! white matter is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002769 name: superior temporal gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1648-FMA_61905 def: "A gyrus (plural gyri) is a bump or ridge on the surface of the brain. The superior temporal gyrus is one of three (sometimes two) gyri in the temporal lobe of the human brain. The superior temporal gyrus is bounded by: the lateral sulcus above; the superior temporal sulcus (not always present or visible) below; an imaginary line drawn from the preoccipital notch to the lateral sulcus posteriorly. The superior temporal gyrus contains several important structures of the brain, including: Brodmann areas 41 and 42, marking the location of the primary auditory cortex, the cortical region responsible for the sensation of sound; Wernicke's area, Brodmann 22p, an important region for the processing of speech so that it can be understood as language. [WP,unvetted]." [Wikipedia:Superior_temporal_gyrus] subset: uberon_slim synonym: "gyrus temporalis superior" EXACT [NIF_GrossAnatomy:birnlex_1648] xref: BM:Tel-STG xref: EFO:0001944 xref: FMA:61905 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1d/Superior_temporal_gyrus.png/200px-Superior_temporal_gyrus.png xref: ncithesaurus:Superior_Temporal_Gyrus xref: NIF_GrossAnatomy:birnlex_1648 xref: SCTID:362345008 is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0001871 ! temporal lobe [Term] id: UBERON:0002770 name: posterior hypothalamic region alt_id: UBERON:NIF_GrossAnatomy_birnlex_1651-FMA_62029 synonym: "mammillary level of hypothalamus" EXACT [FMA:62029] synonym: "mammillary region" EXACT [FMA:62029] synonym: "posterior hypothalamus" EXACT [FMA:62029] xref: FMA:62029 xref: GAID:651 xref: MESH:A.08.186.211.730.385.357.362 xref: NIF_GrossAnatomy:birnlex_1651 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001898 ! hypothalamus [Term] id: UBERON:0002771 name: middle temporal gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1653-FMA_61906 def: "Middle temporal gyrus is a gyrus in the brain on the Temporal lobe. It is located between the superior temporal gyrus and inferior temporal gyrus. Its exact function is unknown, but it has been connected with processes as different as contemplating distance, recognition of known faces, and accessing word meaning while reading. [WP,unvetted]." [Wikipedia:Middle_temporal_gyrus] subset: uberon_slim synonym: "gyrus temporalis medius" EXACT [NIF_GrossAnatomy:birnlex_1653] synonym: "intermediate temporal gyrus" EXACT [FMA:61906] synonym: "medial temporal gyrus" RELATED [Wikipedia:Middle_temporal_gyrus] xref: EFO:0002466 xref: FMA:61906 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/49/WOROI_60_loc.png/200px-WOROI_60_loc.png xref: ncithesaurus:Middle_Temporal_Gyrus xref: NIF_GrossAnatomy:birnlex_1653 xref: SCTID:279190006 is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0001871 ! temporal lobe [Term] id: UBERON:0002772 name: olfactory sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1655-FMA_83769 def: "The medial orbital gyrus presents a well-marked antero-posterior sulcus, the olfactory sulcus, for the olfactory tract. [WP,unvetted]." [Wikipedia:Olfactory_sulcus] subset: uberon_slim synonym: "olfactory groove" EXACT [NIF_GrossAnatomy:birnlex_1655] synonym: "sulcus olfactorius" EXACT [NIF_GrossAnatomy:birnlex_1655] xref: BM:Tel-Cx-OFS xref: FMA:83769 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9a/Gray729_olfactory_sulcus.png/200px-Gray729_olfactory_sulcus.png xref: ncithesaurus:Olfactory_Sulcus xref: NIF_GrossAnatomy:birnlex_1655 xref: SCTID:279358007 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002773 name: anterior transverse temporal gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1657-FMA_61909 synonym: "anterior transverse convolution of heschl" EXACT [NIF_GrossAnatomy:birnlex_1657] synonym: "anterior transverse temporal convolution of heschl" EXACT [] synonym: "first transverse gyrus of heschl" EXACT [] synonym: "great transverse gyrus of heschl" EXACT [] xref: FMA:61909 xref: NIF_GrossAnatomy:birnlex_1657 xref: SCTID:279192003 is_a: UBERON:0003939 ! transverse gyrus of Heschl [Term] id: UBERON:0002774 name: posterior transverse temporal gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1661-FMA_61910 synonym: "posterior transverse convolution of heschl" EXACT [NIF_GrossAnatomy:birnlex_1661] synonym: "posterior transverse temporal convolution of heschl" EXACT [] xref: FMA:61910 xref: NIF_GrossAnatomy:birnlex_1661 xref: SCTID:279193008 is_a: UBERON:0003939 ! transverse gyrus of Heschl [Term] id: UBERON:0002775 name: olivocochlear bundle alt_id: UBERON:NIF_GrossAnatomy_birnlex_1666-FMA_72485 synonym: "bundle of rasmussen" EXACT [] synonym: "efferent cochlear bundle" EXACT [FMA:72485] synonym: "olivocochlear bundle of rasmussen" EXACT [] synonym: "olivocochlear tract" EXACT [FMA:72485] synonym: "tractus olivocochlearis" EXACT [FMA:72485, FMA:TA] xref: FMA:72485 xref: NIF_GrossAnatomy:birnlex_1666 xref: SCTID:369030009 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0002776 name: ventral nuclear group alt_id: UBERON:NIF_GrossAnatomy_birnlex_1669-FMA_62022 def: "The ventral nuclear group is a collection of nuclei on the ventral side of the thalamus. According to MeSH, it consists of the following: ventral anterior nucleus ventral lateral nucleus ventral posterior nucleus [WP,unvetted]." [Wikipedia:Ventral_nuclear_group] subset: uberon_slim synonym: "nuclei ventrales thalami" EXACT [NIF_GrossAnatomy:birnlex_1669] synonym: "ventral group of dorsal thalamus" EXACT [NIF_GrossAnatomy:birnlex_1669] synonym: "ventral nuclear group" EXACT [FMA:62022] synonym: "ventral nuclear group of thalamus" EXACT [FMA:62022] synonym: "ventral nuclear mass" EXACT [FMA:62022] synonym: "ventral nuclei of thalamus" EXACT [FMA:62022] synonym: "ventral tier thalamic nuclei" EXACT [FMA:62022] xref: ABA:VENT xref: BTO:0002467 xref: EV:0100206 xref: FMA:62022 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/ThalamicNuclei.png/200px-ThalamicNuclei.png xref: NIF_GrossAnatomy:birnlex_1669 xref: SCTID:279125005 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter is_a: UBERON:0007692 ! implied link automatically realized ! nucleus of thalamus relationship: part_of UBERON:0001897 ! thalamus relationship: spatially_disjoint_from UBERON:0002144 {source="ABA"} ! peripeduncular nucleus relationship: spatially_disjoint_from UBERON:0002704 {source="ABA"} ! metathalamus [Term] id: UBERON:0002777 name: neostriatum alt_id: UBERON:NIF_GrossAnatomy_birnlex_1672-FMA_77617 subset: uberon_slim xref: BTO:0000418 xref: FMA:77617 xref: GAID:669 xref: NIF_GrossAnatomy:birnlex_1672 is_obsolete: true [Term] id: UBERON:0002778 name: ventral pallidum alt_id: UBERON:NIF_GrossAnatomy_birnlex_1674-FMA_77613 synonym: "ventral globus pallidus" RELATED [BTO:0004375] xref: BM:Tel-VPa xref: BTO:0004375 xref: FMA:77613 xref: NIF_GrossAnatomy:birnlex_1674 is_a: UBERON:0006514 ! pallidum [Term] id: UBERON:0002779 name: lateral superior olivary nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1675-FMA_72472 def: "In anatomy, the olivary bodies or simply olives (Latin oliva and olivae, singular and plural, respectively) are a pair of prominent oval structures in the medulla oblongata, the lower portion of the brainstem. They contain the olivary nuclei. [WP,unvetted]." [Wikipedia:Accessory_olivary_nucleus] subset: uberon_slim synonym: "accessory olivary nucleus" EXACT [FMA:72472] synonym: "accessory superior olivary nucleus" EXACT [FMA:72472] synonym: "accessory superior olive" EXACT [FMA:72472] synonym: "lateral superior olive" EXACT [FMA:72472] synonym: "superior olivary nucleus, lateral part" EXACT [FMA:72472] xref: BM:Pons-SOL xref: FMA:72472 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9a/Gray679.png/200px-Gray679.png xref: NIF_GrossAnatomy:birnlex_1675 xref: SCTID:360477003 is_a: UBERON:0007247 ! superior olivary nucleus [Term] id: UBERON:0002780 name: regional part of forebrain alt_id: UBERON:NIF_GrossAnatomy_birnlex_1677-FMA_61996 def: "A regional part of brain that is part of a forebrain [Obol]." [OBOL:automatic] synonym: "anatomical structure of brain of forebrain" EXACT [OBOL:automatic] synonym: "biological structure of brain of forebrain" EXACT [OBOL:automatic] synonym: "brain anatomical structure of forebrain" EXACT [OBOL:automatic] synonym: "brain biological structure of forebrain" EXACT [OBOL:automatic] synonym: "forebrain anatomical structure of brain" EXACT [OBOL:automatic] synonym: "forebrain biological structure of brain" EXACT [OBOL:automatic] synonym: "forebrain brain anatomical structure" EXACT [OBOL:automatic] synonym: "forebrain brain biological structure" EXACT [OBOL:automatic] synonym: "forebrain neuraxis segment" EXACT [OBOL:automatic] synonym: "forebrain regional part of brain" EXACT [OBOL:automatic] synonym: "forebrain segment" EXACT [FMA:61996] synonym: "forebrain segment of brain" EXACT [OBOL:automatic] synonym: "neuraxis segment of forebrain" EXACT [OBOL:automatic] synonym: "regional part of brain of forebrain" EXACT [OBOL:automatic] synonym: "segment of brain of forebrain" EXACT [OBOL:automatic] synonym: "segment of forebrain" EXACT [NIF_GrossAnatomy:birnlex_1677] xref: FMA:61996 xref: NIF_GrossAnatomy:birnlex_1677 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001890 intersection_of: UBERON:0002616 ! regional part of brain intersection_of: part_of UBERON:0001890 ! forebrain [Term] id: UBERON:0002781 name: caudal part of ventral posterolateral nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1681-FMA_62206 synonym: "ventral posterior lateral nucleus (ilinsky)" EXACT [] synonym: "ventral posterolateral nucleus, caudal part" EXACT [FMA:62206] synonym: "ventral posterolateral thalamic nucleus, caudal part" EXACT [FMA:62206] xref: FMA:62206 xref: NIF_GrossAnatomy:birnlex_1681 is_a: UBERON:0002020 ! gray matter of neuraxis [Term] id: UBERON:0002782 name: medial superior olivary nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1682-FMA_72473 def: "The superior olivary complex (or SOC or superior olive) is a small mass of gray substance situated on the dorsal surface of the lateral part of the trapezoid body. Small in humans, but well developed in certain animals, it exhibits similar structure as the inferior olivary nucleus, and is situated immediately above it. Some of the fibers of the trapezoid body end by arborizing around the cells of this nucleus, while others arise from these cells. [WP,unvetted]." [Wikipedia:Medial_superior_olive] subset: uberon_slim synonym: "chief nucleus of superior olive" EXACT [FMA:72473] synonym: "chief superior olivary nucleus" EXACT [FMA:72473] synonym: "main superior olivary nucleus" EXACT [FMA:72473] synonym: "medial superior olive" EXACT [FMA:72473] synonym: "nucleus laminaris" EXACT [NIF_GrossAnatomy:birnlex_1682] synonym: "principal superior olivary nucleus" EXACT [FMA:72473] synonym: "superior olivary nucleus, medial part" EXACT [FMA:72473] xref: BM:Pons-SOM xref: FMA:72473 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/46/Gray713.png/200px-Gray713.png xref: NIF_GrossAnatomy:birnlex_1682 is_a: UBERON:0007247 ! superior olivary nucleus [Term] id: UBERON:0002783 name: central tegmental tract of pons alt_id: UBERON:NIF_GrossAnatomy_birnlex_1683-FMA_72494 xref: FMA:72494 xref: NIF_GrossAnatomy:birnlex_1683 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0002784 name: regional part of diencephalon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1685-FMA_62005 def: "A regional part of brain that is part of a diencephalon [Obol]." [OBOL:automatic] synonym: "anatomical structure of brain of between brain" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of diencephalon" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of interbrain" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of mature diencephalon" EXACT [OBOL:automatic] synonym: "between brain anatomical structure of brain" EXACT [OBOL:automatic] synonym: "between brain biological structure of brain" EXACT [OBOL:automatic] synonym: "between brain brain anatomical structure" EXACT [OBOL:automatic] synonym: "between brain brain biological structure" EXACT [OBOL:automatic] synonym: "between brain neuraxis segment" EXACT [OBOL:automatic] synonym: "between brain regional part of brain" EXACT [OBOL:automatic] synonym: "between brain segment of brain" EXACT [OBOL:automatic] synonym: "biological structure of brain of between brain" EXACT [OBOL:automatic] synonym: "biological structure of brain of diencephalon" EXACT [OBOL:automatic] synonym: "biological structure of brain of interbrain" EXACT [OBOL:automatic] synonym: "biological structure of brain of mature diencephalon" EXACT [OBOL:automatic] synonym: "brain anatomical structure of between brain" EXACT [OBOL:automatic] synonym: "brain anatomical structure of diencephalon" EXACT [OBOL:automatic] synonym: "brain anatomical structure of interbrain" EXACT [OBOL:automatic] synonym: "brain anatomical structure of mature diencephalon" EXACT [OBOL:automatic] synonym: "brain biological structure of between brain" EXACT [OBOL:automatic] synonym: "brain biological structure of diencephalon" EXACT [OBOL:automatic] synonym: "brain biological structure of interbrain" EXACT [OBOL:automatic] synonym: "brain biological structure of mature diencephalon" EXACT [OBOL:automatic] synonym: "diencephalon anatomical structure of brain" EXACT [OBOL:automatic] synonym: "diencephalon biological structure of brain" EXACT [OBOL:automatic] synonym: "diencephalon brain anatomical structure" EXACT [OBOL:automatic] synonym: "diencephalon brain biological structure" EXACT [OBOL:automatic] synonym: "diencephalon neuraxis segment" EXACT [OBOL:automatic] synonym: "diencephalon regional part of brain" EXACT [OBOL:automatic] synonym: "diencephalon segment" EXACT [FMA:62005] synonym: "diencephalon segment of brain" EXACT [OBOL:automatic] synonym: "interbrain anatomical structure of brain" EXACT [OBOL:automatic] synonym: "interbrain biological structure of brain" EXACT [OBOL:automatic] synonym: "interbrain brain anatomical structure" EXACT [OBOL:automatic] synonym: "interbrain brain biological structure" EXACT [OBOL:automatic] synonym: "interbrain neuraxis segment" EXACT [OBOL:automatic] synonym: "interbrain regional part of brain" EXACT [OBOL:automatic] synonym: "interbrain segment of brain" EXACT [OBOL:automatic] synonym: "mature diencephalon anatomical structure of brain" EXACT [OBOL:automatic] synonym: "mature diencephalon biological structure of brain" EXACT [OBOL:automatic] synonym: "mature diencephalon brain anatomical structure" EXACT [OBOL:automatic] synonym: "mature diencephalon brain biological structure" EXACT [OBOL:automatic] synonym: "mature diencephalon neuraxis segment" EXACT [OBOL:automatic] synonym: "mature diencephalon regional part of brain" EXACT [OBOL:automatic] synonym: "mature diencephalon segment of brain" EXACT [OBOL:automatic] synonym: "neuraxis segment of between brain" EXACT [OBOL:automatic] synonym: "neuraxis segment of diencephalon" EXACT [OBOL:automatic] synonym: "neuraxis segment of interbrain" EXACT [OBOL:automatic] synonym: "neuraxis segment of mature diencephalon" EXACT [OBOL:automatic] synonym: "regional part of brain of between brain" EXACT [OBOL:automatic] synonym: "regional part of brain of diencephalon" EXACT [OBOL:automatic] synonym: "regional part of brain of interbrain" EXACT [OBOL:automatic] synonym: "regional part of brain of mature diencephalon" EXACT [OBOL:automatic] synonym: "segment of brain of between brain" EXACT [OBOL:automatic] synonym: "segment of brain of diencephalon" EXACT [OBOL:automatic] synonym: "segment of brain of interbrain" EXACT [OBOL:automatic] synonym: "segment of brain of mature diencephalon" EXACT [OBOL:automatic] synonym: "segment of diencephalon" EXACT [NIF_GrossAnatomy:birnlex_1685] xref: FMA:62005 xref: NIF_GrossAnatomy:birnlex_1685 is_a: UBERON:0002780 ! regional part of forebrain relationship: part_of UBERON:0001894 intersection_of: UBERON:0002616 ! regional part of brain intersection_of: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0002785 name: regional part of lateral hypothalamic region alt_id: UBERON:NIF_GrossAnatomy_birnlex_1687-FMA_62312 synonym: "lateral hypothalamic region segment" EXACT [FMA:62312] synonym: "segment of lateral hypothalamic region" EXACT [NIF_GrossAnatomy:birnlex_1687] xref: FMA:62312 xref: NIF_GrossAnatomy:birnlex_1687 is_a: UBERON:0003048 ! regional part of hypothalamus [Term] id: UBERON:0002786 name: abducens nerve fibers alt_id: UBERON:NIF_GrossAnatomy_birnlex_1689-FMA_72491 synonym: "abducens nerve fibers" EXACT [FMA:72491] synonym: "abducens nerve tract" EXACT [FMA:72491] synonym: "central part of abducens nerve" EXACT [FMA:72491] synonym: "root of abducens nerve" EXACT [FMA:72491] xref: FMA:72491 xref: NIF_GrossAnatomy:birnlex_1689 is_a: UBERON:0006843 {source="FMA"} ! root of cranial nerve [Term] id: UBERON:0002787 name: decussation of trochlear nerve alt_id: UBERON:NIF_GrossAnatomy_birnlex_1690-FMA_72488 synonym: "decussation of trochlear nerve (IV)" EXACT [FMA:72488] synonym: "trochlear neural decussation" EXACT [FMA:72488] xref: FMA:72488 xref: NIF_GrossAnatomy:birnlex_1690 is_a: UBERON:0007418 ! decussation of neuraxis [Term] id: UBERON:0002788 name: anterior nuclear group alt_id: UBERON:NIF_GrossAnatomy_birnlex_1692-FMA_62019 def: "The anterior nuclei of thalamus (or anterior nuclear group) are collection of nuclei at the rostral end of the dorsal thalamus. [WP,unvetted]." [Wikipedia:Anterior_nuclear_group] subset: uberon_slim subset: vertebrate_core synonym: "anterior nuclear group" EXACT [FMA:62019] synonym: "anterior nuclear group of thalamus" EXACT [FMA:62019] synonym: "anterior nuclei of thalamus" EXACT [FMA:62019] synonym: "anterior nucleus of thalamus" EXACT [FMA:62019] synonym: "anterior thalamic group" EXACT [MA:0000861] synonym: "anterior thalamic nuclei" EXACT [FMA:62019] synonym: "anterior thalamus" EXACT [NIF_GrossAnatomy:birnlex_1692] synonym: "nuclei anterior thalami" EXACT [NIF_GrossAnatomy:birnlex_1692] synonym: "nuclei anteriores (thalami)" EXACT [NIF_GrossAnatomy:birnlex_1692] synonym: "nuclei anteriores thalami" EXACT [NIF_GrossAnatomy:birnlex_1692] synonym: "nuclei thalamicus anterior" EXACT [NIF_GrossAnatomy:birnlex_1692] xref: EV:0100196 xref: FMA:62019 xref: GAID:658 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/ThalamicNuclei.png/200px-ThalamicNuclei.png xref: MA:0000861 xref: MESH:A.08.186.211.730.385.826.701.080 xref: NIF_GrossAnatomy:birnlex_1692 xref: SCTID:279124009 xref: ZFA:0000427 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter is_a: UBERON:0007692 ! implied link automatically realized ! nucleus of thalamus relationship: part_of UBERON:0004703 {source="MA"} ! dorsal thalamus [Term] id: UBERON:0002789 name: regional part of posterior hypothalamic region alt_id: UBERON:NIF_GrossAnatomy_birnlex_1697-FMA_62311 def: "A regional part of brain that is part of a posterior hypothalamic region [Obol]." [OBOL:automatic] synonym: "anatomical structure of brain of mammillary level of hypothalamus" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of mammillary region" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of posterior hypothalamic region" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of posterior hypothalamus" EXACT [OBOL:automatic] synonym: "biological structure of brain of mammillary level of hypothalamus" EXACT [OBOL:automatic] synonym: "biological structure of brain of mammillary region" EXACT [OBOL:automatic] synonym: "biological structure of brain of posterior hypothalamic region" EXACT [OBOL:automatic] synonym: "biological structure of brain of posterior hypothalamus" EXACT [OBOL:automatic] synonym: "brain anatomical structure of mammillary level of hypothalamus" EXACT [OBOL:automatic] synonym: "brain anatomical structure of mammillary region" EXACT [OBOL:automatic] synonym: "brain anatomical structure of posterior hypothalamic region" EXACT [OBOL:automatic] synonym: "brain anatomical structure of posterior hypothalamus" EXACT [OBOL:automatic] synonym: "brain biological structure of mammillary level of hypothalamus" EXACT [OBOL:automatic] synonym: "brain biological structure of mammillary region" EXACT [OBOL:automatic] synonym: "brain biological structure of posterior hypothalamic region" EXACT [OBOL:automatic] synonym: "brain biological structure of posterior hypothalamus" EXACT [OBOL:automatic] synonym: "mammillary level of hypothalamus anatomical structure of brain" EXACT [OBOL:automatic] synonym: "mammillary level of hypothalamus biological structure of brain" EXACT [OBOL:automatic] synonym: "mammillary level of hypothalamus brain anatomical structure" EXACT [OBOL:automatic] synonym: "mammillary level of hypothalamus brain biological structure" EXACT [OBOL:automatic] synonym: "mammillary level of hypothalamus neuraxis segment" EXACT [OBOL:automatic] synonym: "mammillary level of hypothalamus regional part of brain" EXACT [OBOL:automatic] synonym: "mammillary level of hypothalamus segment of brain" EXACT [OBOL:automatic] synonym: "mammillary region anatomical structure of brain" EXACT [OBOL:automatic] synonym: "mammillary region biological structure of brain" EXACT [OBOL:automatic] synonym: "mammillary region brain anatomical structure" EXACT [OBOL:automatic] synonym: "mammillary region brain biological structure" EXACT [OBOL:automatic] synonym: "mammillary region neuraxis segment" EXACT [OBOL:automatic] synonym: "mammillary region regional part of brain" EXACT [OBOL:automatic] synonym: "mammillary region segment of brain" EXACT [OBOL:automatic] synonym: "neuraxis segment of mammillary level of hypothalamus" EXACT [OBOL:automatic] synonym: "neuraxis segment of mammillary region" EXACT [OBOL:automatic] synonym: "neuraxis segment of posterior hypothalamic region" EXACT [OBOL:automatic] synonym: "neuraxis segment of posterior hypothalamus" EXACT [OBOL:automatic] synonym: "posterior hypothalamic region anatomical structure of brain" EXACT [OBOL:automatic] synonym: "posterior hypothalamic region biological structure of brain" EXACT [OBOL:automatic] synonym: "posterior hypothalamic region brain anatomical structure" EXACT [OBOL:automatic] synonym: "posterior hypothalamic region brain biological structure" EXACT [OBOL:automatic] synonym: "posterior hypothalamic region neuraxis segment" EXACT [OBOL:automatic] synonym: "posterior hypothalamic region regional part of brain" EXACT [OBOL:automatic] synonym: "posterior hypothalamic region segment" EXACT [FMA:62311] synonym: "posterior hypothalamic region segment of brain" EXACT [OBOL:automatic] synonym: "posterior hypothalamus anatomical structure of brain" EXACT [OBOL:automatic] synonym: "posterior hypothalamus biological structure of brain" EXACT [OBOL:automatic] synonym: "posterior hypothalamus brain anatomical structure" EXACT [OBOL:automatic] synonym: "posterior hypothalamus brain biological structure" EXACT [OBOL:automatic] synonym: "posterior hypothalamus neuraxis segment" EXACT [OBOL:automatic] synonym: "posterior hypothalamus regional part of brain" EXACT [OBOL:automatic] synonym: "posterior hypothalamus segment of brain" EXACT [OBOL:automatic] synonym: "regional part of brain of mammillary level of hypothalamus" EXACT [OBOL:automatic] synonym: "regional part of brain of mammillary region" EXACT [OBOL:automatic] synonym: "regional part of brain of posterior hypothalamic region" EXACT [OBOL:automatic] synonym: "regional part of brain of posterior hypothalamus" EXACT [OBOL:automatic] synonym: "segment of brain of mammillary level of hypothalamus" EXACT [OBOL:automatic] synonym: "segment of brain of mammillary region" EXACT [OBOL:automatic] synonym: "segment of brain of posterior hypothalamic region" EXACT [OBOL:automatic] synonym: "segment of brain of posterior hypothalamus" EXACT [OBOL:automatic] synonym: "segment of posterior hypothalamic region" EXACT [NIF_GrossAnatomy:birnlex_1697] xref: FMA:62311 xref: NIF_GrossAnatomy:birnlex_1697 is_a: UBERON:0003048 ! regional part of hypothalamus relationship: part_of UBERON:0002770 intersection_of: UBERON:0002616 ! regional part of brain intersection_of: part_of UBERON:0002770 ! posterior hypothalamic region [Term] id: UBERON:0002790 name: dorsal acoustic stria alt_id: UBERON:NIF_GrossAnatomy_birnlex_1698-FMA_72496 synonym: "posterior acoustic stria" EXACT [FMA:72496] synonym: "stria cochlearis posterior" EXACT [FMA:72496, FMA:TA] xref: FMA:72496 xref: NIF_GrossAnatomy:birnlex_1698 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0002791 name: regional part of telencephalon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1700-FMA_62374 def: "A regional part of brain that is part of a telencephalon [Obol]." [OBOL:automatic] synonym: "anatomical structure of brain of telencephalon" EXACT [OBOL:automatic] synonym: "biological structure of brain of telencephalon" EXACT [OBOL:automatic] synonym: "brain anatomical structure of telencephalon" EXACT [OBOL:automatic] synonym: "brain biological structure of telencephalon" EXACT [OBOL:automatic] synonym: "neuraxis segment of telencephalon" EXACT [OBOL:automatic] synonym: "regional part of brain of telencephalon" EXACT [OBOL:automatic] synonym: "segment of brain of telencephalon" EXACT [OBOL:automatic] synonym: "segment of telencephalon" EXACT [NIF_GrossAnatomy:birnlex_1700] synonym: "telencephalon anatomical structure of brain" EXACT [OBOL:automatic] synonym: "telencephalon biological structure of brain" EXACT [OBOL:automatic] synonym: "telencephalon brain anatomical structure" EXACT [OBOL:automatic] synonym: "telencephalon brain biological structure" EXACT [OBOL:automatic] synonym: "telencephalon neuraxis segment" EXACT [OBOL:automatic] synonym: "telencephalon regional part of brain" EXACT [OBOL:automatic] synonym: "telencephalon segment" EXACT [FMA:62374] synonym: "telencephalon segment of brain" EXACT [OBOL:automatic] xref: FMA:62374 xref: NIF_GrossAnatomy:birnlex_1700 is_a: UBERON:0002780 ! regional part of forebrain relationship: part_of UBERON:0001893 intersection_of: UBERON:0002616 ! regional part of brain intersection_of: part_of UBERON:0001893 ! telencephalon [Term] id: UBERON:0002792 name: lumbar spinal cord alt_id: UBERON:NIF_GrossAnatomy_birnlex_1704-FMA_71168 def: "." [Wikipedia:Lumbar_spinal_cord] subset: uberon_slim synonym: "lumbar segment of spinal cord" EXACT [FMA:71168] synonym: "lumbar segments of spinal cord [1-5]" EXACT [FMA:71168] synonym: "lumbar spinal cord" EXACT [FMA:71168] synonym: "segmenta lumbalia medullae spinalis [1-5]" EXACT [FMA:71168, FMA:TA] xref: FMA:71168 xref: ncithesaurus:Lumbar_Spinal_Cord xref: NIF_GrossAnatomy:birnlex_1704 xref: SCTID:180962006 is_a: UBERON:0005844 ! implied link automatically realized ! spinal cord segment relationship: adjacent_to UBERON:0005462 intersection_of: UBERON:0005844 ! spinal cord segment intersection_of: adjacent_to UBERON:0005462 ! lower back [Term] id: UBERON:0002793 name: dorsal longitudinal fasciculus of pons alt_id: UBERON:NIF_GrossAnatomy_birnlex_1707-FMA_72492 def: "A dorsal longitudinal fasciculus that is part of a pons [Obol]." [OBOL:automatic] synonym: "bundle of Schutz of pons" EXACT [OBOL:automatic] synonym: "bundle of Schutz of pons of varolius" EXACT [OBOL:automatic] synonym: "dorsal longitudinal fasciculus of pons of varolius" EXACT [OBOL:automatic] synonym: "fasciculus of Schutz of pons" EXACT [OBOL:automatic] synonym: "fasciculus of Schutz of pons of varolius" EXACT [OBOL:automatic] synonym: "pons bundle of Schutz" EXACT [OBOL:automatic] synonym: "pons dorsal longitudinal fasciculus" EXACT [OBOL:automatic] synonym: "pons fasciculus of Schutz" EXACT [OBOL:automatic] synonym: "pons of varolius bundle of Schutz" EXACT [OBOL:automatic] synonym: "pons of varolius dorsal longitudinal fasciculus" EXACT [OBOL:automatic] synonym: "pons of varolius fasciculus of Schutz" EXACT [OBOL:automatic] synonym: "pons of varolius posterior longitudinal fasciculus" EXACT [OBOL:automatic] synonym: "pons posterior longitudinal fasciculus" EXACT [OBOL:automatic] synonym: "posterior longitudinal fasciculus of pons" EXACT [OBOL:automatic] synonym: "posterior longitudinal fasciculus of pons of varolius" EXACT [OBOL:automatic] xref: FMA:72492 xref: NIF_GrossAnatomy:birnlex_1707 is_a: UBERON:0003045 ! dorsal longitudinal fasciculus relationship: part_of UBERON:0000988 intersection_of: UBERON:0003045 ! dorsal longitudinal fasciculus intersection_of: part_of UBERON:0000988 ! pons [Term] id: UBERON:0002794 name: medial longitudinal fasciculus of pons alt_id: UBERON:NIF_GrossAnatomy_birnlex_1708-FMA_72493 def: "A medial longitudinal fasciculus that is part of a pons [Obol]." [OBOL:automatic] synonym: "medial longitudinal fasciculus of pons of varolius" EXACT [OBOL:automatic] synonym: "pons medial longitudinal fasciculus" EXACT [OBOL:automatic] synonym: "pons of varolius medial longitudinal fasciculus" EXACT [OBOL:automatic] xref: FMA:72493 xref: NIF_GrossAnatomy:birnlex_1708 is_a: UBERON:0002309 ! medial longitudinal fasciculus relationship: part_of UBERON:0000988 intersection_of: UBERON:0002309 ! medial longitudinal fasciculus intersection_of: part_of UBERON:0000988 ! pons [Term] id: UBERON:0002795 name: frontal pole alt_id: UBERON:NIF_GrossAnatomy_birnlex_1716-FMA_74885 def: "Component of the frontal lobe. The rostral and caudal boundaries of the frontal pole are the superior frontal gyrus and the rostral division of the middle frontal gyrus respectively (Christine Fennama-Notestine)." [NIF_GrossAnatomy:birnlex_1716] subset: uberon_slim synonym: "polus frontalis" EXACT [NeuroNames:57] xref: FMA:74885 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e3/Human_brain_lateral_view_description.JPG/200px-Human_brain_lateral_view_description.JPG xref: NIF_GrossAnatomy:birnlex_1716 xref: SCTID:314144002 is_a: UBERON:0009899 ! implied link automatically realized ! pole of cerebral hemisphere relationship: part_of UBERON:0001870 intersection_of: UBERON:0009899 ! pole of cerebral hemisphere intersection_of: part_of UBERON:0001870 ! frontal cortex [Term] id: UBERON:0002796 name: motor root of trigeminal nerve alt_id: UBERON:NIF_GrossAnatomy_birnlex_1717-FMA_52612 comment: todo - check ZFA synonym: "motor branch of trigeminal nerve" EXACT [FMA:52612] synonym: "motor root of nervus v" EXACT [] synonym: "radix motoria (Nervus trigeminus [V])" EXACT [FMA:52612] xref: FMA:52612 xref: NIF_GrossAnatomy:birnlex_1717 xref: SCTID:280189001 xref: ZFA:0000650 is_a: UBERON:0004673 ! trigeminal nerve root [Term] id: UBERON:0002797 name: dorsal trigeminal tract alt_id: UBERON:NIF_GrossAnatomy_birnlex_1718-FMA_72500 def: "The dorsal trigeminal tract (dorsal trigeminothalamic tract, or lemniscus) is a tract which receives signals from Meissner's corpuscles and Pacinian corpuscles. this tract arises from Principal trigeminal nucleus and terminates in the VPM nucleus of the thalamus. [WP,unvetted]." [Wikipedia:Dorsal_trigeminal_tract] subset: uberon_slim synonym: "dorsal ascending trigeminal tract" EXACT [FMA:72500] synonym: "dorsal division of trigeminal lemniscus" EXACT [FMA:72500] synonym: "dorsal secondary ascending tract of v" EXACT [] synonym: "dorsal secondary tract of v" EXACT [] synonym: "dorsal trigeminal lemniscus" EXACT [FMA:72500] synonym: "dorsal trigeminal pathway" EXACT [FMA:72500] synonym: "dorsal trigeminothalamic tract" EXACT [FMA:72500] synonym: "posterior trigeminothalamic tract" EXACT [FMA:72500] synonym: "reticulothalamic tract" EXACT [FMA:72500] synonym: "tractus trigeminothalamicus posterior" EXACT [FMA:72500, FMA:TA] synonym: "uncrossed dorsal trigeminothalamic tract" EXACT [FMA:72500] xref: FMA:72500 xref: NIF_GrossAnatomy:birnlex_1718 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0002798 name: spinothalamic tract of pons alt_id: UBERON:NIF_GrossAnatomy_birnlex_1719-FMA_72504 def: "Part of spinothalamic tract that is in the pontine tegmentum" [NIF_GrossAnatomy:birnlex_1719] synonym: "pons of varolius spinothalamic tract" EXACT [OBOL:automatic] synonym: "pons of varolius spinothalamic tract of medulla" EXACT [OBOL:automatic] synonym: "pons spinothalamic tract" EXACT [OBOL:automatic] synonym: "pons spinothalamic tract of medulla" EXACT [OBOL:automatic] synonym: "spinothalamic tract of medulla of pons" EXACT [OBOL:automatic] synonym: "spinothalamic tract of medulla of pons of varolius" EXACT [OBOL:automatic] synonym: "spinothalamic tract of pons of varolius" EXACT [OBOL:automatic] xref: FMA:72504 xref: NIF_GrossAnatomy:birnlex_1719 xref: SCTID:369026006 is_a: UBERON:0007702 {source="FMA"} ! tract of brain relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum relationship: part_of UBERON:0007703 ! spinothalamic tract [Term] id: UBERON:0002799 name: fronto-orbital sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1724-FMA_83768 synonym: "fronto-orbital dimple" EXACT [FMA:83768] synonym: "orbito-frontal sulcus" EXACT [FMA:83768] synonym: "orbitofrontal sulcus" EXACT [BM:Tel-Cx-OFS] xref: BM:Tel-Cx-OFS xref: FMA:83768 xref: NIF_GrossAnatomy:birnlex_1724 is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus relationship: part_of UBERON:0004167 ! orbitofrontal cortex [Term] id: UBERON:0002800 name: spinal trigeminal tract of pons alt_id: UBERON:NIF_GrossAnatomy_birnlex_1725-FMA_72507 xref: FMA:72507 xref: NIF_GrossAnatomy:birnlex_1725 xref: SCTID:369027002 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0002801 name: stratum zonale of thalamus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1727-FMA_83905 synonym: "neuraxis stratum" EXACT [FMA:83905] synonym: "stratum zonale thalami" EXACT [NIF_GrossAnatomy:birnlex_1727] xref: FMA:83905 xref: NIF_GrossAnatomy:birnlex_1727 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0002802 name: left parietal lobe alt_id: UBERON:NIF_GrossAnatomy_birnlex_1728-FMA_72974 xref: FMA:72974 xref: NIF_GrossAnatomy:birnlex_1728 xref: SCTID:314147009 is_a: UBERON:0001872 ! implied link automatically realized ! parietal lobe relationship: part_of UBERON:0002812 intersection_of: UBERON:0001872 ! parietal lobe intersection_of: part_of UBERON:0002812 ! left cerebral hemisphere relationship: adjacent_to UBERON:0002921 ! longitudinal fissure relationship: spatially_disjoint_from UBERON:0002803 ! right parietal lobe [Term] id: UBERON:0002803 name: right parietal lobe alt_id: UBERON:NIF_GrossAnatomy_birnlex_1729-FMA_72973 xref: FMA:72973 xref: NIF_GrossAnatomy:birnlex_1729 xref: SCTID:314146000 is_a: UBERON:0001872 ! implied link automatically realized ! parietal lobe relationship: part_of UBERON:0002813 intersection_of: UBERON:0001872 ! parietal lobe intersection_of: part_of UBERON:0002813 ! right cerebral hemisphere relationship: adjacent_to UBERON:0002921 ! longitudinal fissure [Term] id: UBERON:0002804 name: left limbic lobe alt_id: UBERON:NIF_GrossAnatomy_birnlex_1780-FMA_72981 xref: FMA:72981 xref: NIF_GrossAnatomy:birnlex_1780 is_a: UBERON:0002600 ! implied link automatically realized ! limbic lobe relationship: part_of UBERON:0002812 intersection_of: UBERON:0002600 ! limbic lobe intersection_of: part_of UBERON:0002812 ! left cerebral hemisphere [Term] id: UBERON:0002805 name: right limbic lobe alt_id: UBERON:NIF_GrossAnatomy_birnlex_1781-FMA_72980 xref: FMA:72980 xref: NIF_GrossAnatomy:birnlex_1781 is_a: UBERON:0002600 ! implied link automatically realized ! limbic lobe relationship: part_of UBERON:0002813 intersection_of: UBERON:0002600 ! limbic lobe intersection_of: part_of UBERON:0002813 ! right cerebral hemisphere [Term] id: UBERON:0002806 name: left occipital lobe alt_id: UBERON:NIF_GrossAnatomy_birnlex_1782-FMA_72976 xref: FMA:72976 xref: NIF_GrossAnatomy:birnlex_1782 xref: SCTID:314150007 is_a: UBERON:0002021 ! implied link automatically realized ! occipital lobe relationship: part_of UBERON:0002812 intersection_of: UBERON:0002021 ! occipital lobe intersection_of: part_of UBERON:0002812 ! left cerebral hemisphere relationship: adjacent_to UBERON:0002921 ! longitudinal fissure relationship: spatially_disjoint_from UBERON:0002807 ! right occipital lobe [Term] id: UBERON:0002807 name: right occipital lobe alt_id: UBERON:NIF_GrossAnatomy_birnlex_1783-FMA_72975 xref: FMA:72975 xref: NIF_GrossAnatomy:birnlex_1783 xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rv9OFy5wpEbGdrcN5Y29ycA xref: SCTID:314149007 is_a: UBERON:0002021 ! implied link automatically realized ! occipital lobe relationship: part_of UBERON:0002813 intersection_of: UBERON:0002021 ! occipital lobe intersection_of: part_of UBERON:0002813 ! right cerebral hemisphere relationship: adjacent_to UBERON:0002921 ! longitudinal fissure [Term] id: UBERON:0002808 name: left temporal lobe alt_id: UBERON:NIF_GrossAnatomy_birnlex_1784-FMA_72972 xref: FMA:72972 xref: NIF_GrossAnatomy:birnlex_1784 xref: OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rwQLi-ZwpEbGdrcN5Y29ycA xref: SCTID:314158000 is_a: UBERON:0001871 ! implied link automatically realized ! temporal lobe relationship: part_of UBERON:0002812 intersection_of: UBERON:0001871 ! temporal lobe intersection_of: part_of UBERON:0002812 ! left cerebral hemisphere [Term] id: UBERON:0002809 name: right temporal lobe alt_id: UBERON:NIF_GrossAnatomy_birnlex_1785-FMA_72971 xref: FMA:72971 xref: NIF_GrossAnatomy:birnlex_1785 xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rwQLi-ZwpEbGdrcN5Y29ycA xref: SCTID:314157005 is_a: UBERON:0001871 ! implied link automatically realized ! temporal lobe relationship: part_of UBERON:0002813 intersection_of: UBERON:0001871 ! temporal lobe intersection_of: part_of UBERON:0002813 ! right cerebral hemisphere [Term] id: UBERON:0002810 name: right frontal lobe alt_id: UBERON:NIF_GrossAnatomy_birnlex_1786-FMA_72969 xref: FMA:72969 xref: NIF_GrossAnatomy:birnlex_1786 xref: SCTID:314141005 is_a: UBERON:0001870 ! implied link automatically realized ! frontal cortex relationship: part_of UBERON:0002813 intersection_of: UBERON:0001870 ! frontal cortex intersection_of: part_of UBERON:0002813 ! right cerebral hemisphere relationship: adjacent_to UBERON:0002921 ! longitudinal fissure [Term] id: UBERON:0002811 name: left frontal lobe alt_id: UBERON:NIF_GrossAnatomy_birnlex_1787-FMA_72970 xref: FMA:72970 xref: NIF_GrossAnatomy:birnlex_1787 xref: SCTID:314142003 is_a: UBERON:0001870 ! implied link automatically realized ! frontal cortex relationship: part_of UBERON:0002812 intersection_of: UBERON:0001870 ! frontal cortex intersection_of: part_of UBERON:0002812 ! left cerebral hemisphere relationship: adjacent_to UBERON:0002921 ! longitudinal fissure relationship: spatially_disjoint_from UBERON:0002810 ! right frontal lobe [Term] id: UBERON:0002812 name: left cerebral hemisphere alt_id: UBERON:NIF_GrossAnatomy_birnlex_1795-FMA_61819 synonym: "left hemisphere" EXACT [NIF_GrossAnatomy:birnlex_1795] xref: FMA:61819 xref: ncithesaurus:Left_Cerebral_Hemisphere xref: NIF_GrossAnatomy:birnlex_1795 xref: SCTID:362323007 is_a: UBERON:0001869 ! implied link automatically realized ! cerebral hemisphere relationship: in_left_side_of UBERON:0000955 intersection_of: UBERON:0001869 ! cerebral hemisphere intersection_of: in_left_side_of UBERON:0000955 ! brain [Term] id: UBERON:0002813 name: right cerebral hemisphere alt_id: UBERON:NIF_GrossAnatomy_birnlex_1797-FMA_67292 synonym: "right hemisphere" EXACT [NIF_GrossAnatomy:birnlex_1797] xref: FMA:67292 xref: ncithesaurus:Right_Cerebral_Hemisphere xref: NIF_GrossAnatomy:birnlex_1797 xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rvigx5ZwpEbGdrcN5Y29ycA xref: SCTID:362322002 is_a: UBERON:0001869 ! implied link automatically realized ! cerebral hemisphere relationship: in_right_side_of UBERON:0000955 intersection_of: UBERON:0001869 ! cerebral hemisphere intersection_of: in_right_side_of UBERON:0000955 ! brain [Term] id: UBERON:0002814 name: posterior superior fissure alt_id: UBERON:NIF_GrossAnatomy_birnlex_20081254-FMA_83733 synonym: "fissura post clivalis" EXACT [FMA:83733, FMA:TA] synonym: "post-clival fissure" EXACT [FMA:83733] synonym: "postclival fissure" EXACT [FMA:83733] synonym: "posterior superior fissure of cerebellum" EXACT [FMA:83733] synonym: "postlunate fissure" EXACT [FMA:83733] xref: FMA:83733 xref: NIF_GrossAnatomy:birnlex_20081254 xref: NIF_GrossAnatomy:nlx_anat_20081254 xref: SCTID:314170001 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0002815 name: horizontal fissure alt_id: UBERON:NIF_GrossAnatomy_birnlex_20081255-FMA_14697 def: "The largest and deepest fissure in the cerebellum is named the horizontal sulcus (or horizontal fissure). It commences in front of the pons, and passes horizontally around the free margin of the hemisphere to the middle line behind, and divides the cerebellum into an upper and a lower portion. [WP,unvetted]." [Wikipedia:Horizontal_fissure_of_cerebellum] synonym: "fissura intercruralis cerebelli" EXACT [FMA:75135, FMA:TA] synonym: "great horizontal fissure" EXACT [FMA:75135] synonym: "horizontal fissure of cerebellum" EXACT [] synonym: "horizontal fissure of right lung(line)" EXACT [FMA:14697] synonym: "horizontal sulcus" EXACT [] synonym: "intercrural fissure of cerebellum" EXACT [FMA:75135] xref: FMA:14697 xref: FMA:75135 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8d/Gray702.png/200px-Gray702.png xref: NIF_GrossAnatomy:birnlex_20081255 xref: NIF_GrossAnatomy:nlx_anat_20081255 xref: SCTID:314173004 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0002816 name: prepyramidal fissure alt_id: UBERON:NIF_GrossAnatomy_birnlex_20081257-FMA_75138 synonym: "fissura prebiventralis cerebelli" EXACT [FMA:75138, FMA:TA] synonym: "prebiventral fissure of cerebellum" EXACT [FMA:75138] synonym: "prepyramidal fissure of cerebellum" EXACT [FMA:75138] synonym: "prepyramidal sulcus" EXACT [FMA:75138] xref: FMA:75138 xref: NIF_GrossAnatomy:birnlex_20081257 xref: NIF_GrossAnatomy:nlx_anat_20081257 xref: SCTID:314171002 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0002817 name: secondary fissure alt_id: UBERON:NIF_GrossAnatomy_birnlex_20081258-FMA_84043 synonym: "fissura postpyramidalis cerebelli" EXACT [FMA:84043, FMA:TA] synonym: "post-pyramidal fissure of cerebellum" EXACT [FMA:84043] synonym: "postpyramidal fissure" EXACT [FMA:84043] synonym: "secondary fissure" EXACT [FMA:84043] synonym: "secondary fissure of cerebellum" EXACT [FMA:84043] xref: FMA:84043 xref: NIF_GrossAnatomy:birnlex_20081258 xref: NIF_GrossAnatomy:nlx_anat_20081258 xref: SCTID:314169002 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0002818 name: posterolateral fissure alt_id: UBERON:NIF_GrossAnatomy_birnlex_20081259-FMA_83730 synonym: "dorsolateral fissure of cerebellum" EXACT [FMA:83730] synonym: "posterolateral fissure of cerebellum" EXACT [FMA:83730] synonym: "prenodular fissure" EXACT [FMA:83730] synonym: "prenodular sulcus" EXACT [FMA:83730] synonym: "uvulonodular fissure" EXACT [FMA:83730] xref: FMA:83730 xref: NIF_GrossAnatomy:birnlex_20081259 xref: NIF_GrossAnatomy:nlx_anat_20081259 xref: SCTID:314172009 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0002819 name: apex of cochlea alt_id: UBERON:NIF_GrossAnatomy_birnlex_2523-FMA_75641 def: "The cupula is a structure in the vestibular system, sensing proprioception. The cupula is located within the ampullae of each of the three semicircular canals. As fluid rushes by the cupula, hair cells within it sense rotational acceleration, and transmit the corresponding signal to the brain through the vestibulocochlear nerve (CN VIII) In their natural orientation within the head, the cupulae are located on the medial aspect of the semicircular canals. In this orientation, the kinocilia rest on the posterior aspect of the cupula. [WP,unvetted]." [Wikipedia:Apex_of_cochlea] subset: uberon_slim synonym: "cochlea apex" EXACT [FMA:75641] synonym: "cupula of cochlea" EXACT [FMA:75641] xref: FMA:75641 xref: NIF_GrossAnatomy:birnlex_2523 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0002820 name: zona arcuata of basilar membrane of cochlea alt_id: UBERON:0002821 alt_id: UBERON:NIF_GrossAnatomy_birnlex_2528-FMA_75709 xref: FMA:75709 xref: NIF_GrossAnatomy:birnlex_2528 is_a: UBERON:0005764 ! acellular membrane [Term] id: UBERON:0002822 name: macula lutea proper alt_id: UBERON:NIF_GrossAnatomy_birnlex_2542-FMA_58671 xref: FMA:58671 xref: NIF_GrossAnatomy:birnlex_2542 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0000053 ! macula lutea [Term] id: UBERON:0002823 name: clivus of fovea centralis alt_id: UBERON:NIF_GrossAnatomy_birnlex_2544-FMA_58674 comment: NIF differs from FMA synonym: "clivus of macula lutea" EXACT [NIF_GrossAnatomy:birnlex_2544] synonym: "fovea centralis clivus" EXACT [FMA:58674] xref: FMA:58674 xref: NIF_GrossAnatomy:birnlex_2544 is_a: UBERON:0000466 ! immaterial anatomical entity relationship: part_of UBERON:0001786 ! fovea centralis [Term] id: UBERON:0002824 name: vestibular ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2549-FMA_53435 def: "The vestibular nerve ganglion (also called Scarpa's ganglion) is the ganglion of the vestibular nerve. It contains the cell bodies of the bipolar primary afferent neurons whose peripheral processes form synaptic contact with hair cells of the vestibular sensory end organs[WP,unvetted]." [Wikipedia:Vestibular_ganglion] subset: uberon_slim synonym: "Scarpa's ganglion" EXACT [FMA:53435] synonym: "vestibulocochlear component" EXACT [] synonym: "vestibulocochlear VIII ganglion vestibular component" EXACT [MA:0001086] xref: EHDAA2:0002199 xref: EMAPA:17573 xref: FMA:53435 xref: MA:0001086 xref: ncithesaurus:Vestibular_Ganglion xref: NIF_GrossAnatomy:birnlex_2549 xref: OG:0000682 xref: SCTID:244450009 is_a: UBERON:0001714 ! ganglion of cranial nerve [Term] id: UBERON:0002825 name: superior part of vestibular ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2551-FMA_77531 synonym: "pars superior vestibularis" RELATED [MA:0002778] synonym: "vestibular ganglion superior part" EXACT [MA:0002778] xref: FMA:77531 xref: MA:0002778 xref: NIF_GrossAnatomy:birnlex_2551 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0002824 ! vestibular ganglion [Term] id: UBERON:0002826 name: inferior part of vestibular ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2552-FMA_77532 synonym: "vestibular ganglion inferior part" EXACT [MA:0002779] xref: FMA:77532 xref: MA:0002779 xref: NIF_GrossAnatomy:birnlex_2552 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0002824 ! vestibular ganglion [Term] id: UBERON:0002827 name: auditory ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2564-ZFA_0000588 comment: The cell bodies of the cochlear nerve lie within the central aspect of the cochlea and are collectively known as the spiral ganglion. This name reflects the fact that the cell bodies, considered as a unit, have a spiral (or perhaps more accurately, a helical) shape, reflecting the shape of the cochlea. The terms "cochlear nerve fiber" and "spiral ganglion cell" are used, to some degree, interchangeably, although the former may be used to more specifically refer to the central axons of the cochlear nerve. These central axons exit the cochlea at its base, where it forms a nerve trunk. In humans, this aspect of the nerve is roughly one inch in length. It projects centrally to the brainstem, where its fibers synapse with the cell bodies of the cochlear nucleus[Wikipedia:Cochlear_nerve] subset: vertebrate_core synonym: "auditory ganglion" EXACT [ZFA:0000588] synonym: "gVIII" EXACT [ZFA:0000588] synonym: "sag" EXACT [ZFA:0000588] synonym: "statoacoustic (VIII) ganglion" EXACT [ZFA:0000588] synonym: "statoacoustic ganglia" EXACT [ZFA:0000588] synonym: "vestibulocochlear VIII ganglion" EXACT [MA:0001084] xref: EFO:0003543 xref: EHDAA:5569 xref: EHDAA:6653 xref: EHDAA2:0002196 xref: EMAPA:17571 xref: MA:0001084 xref: NIF_GrossAnatomy:birnlex_2564 xref: OG:0000696 xref: XAO:0004142 xref: ZFA:0000588 is_a: UBERON:0002420 ! basal ganglion relationship: develops_from UBERON:0003249 {source="NBK53175"} ! epithelium of otic placode relationship: develops_from UBERON:0005565 ! facio-acoustic neural crest relationship: part_of UBERON:0001690 ! ear [Term] id: UBERON:0002828 name: ventral cochlear nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_2567-FMA_54621 def: "The ventral cochlear nucleus (or anterior, or accessory), placed between the two divisions of the cochlear nerve, is on the ventral aspect of the inferior peduncle. Composed of several regions of distinct cell types, this nucleus serves primarily as a relay station for ascending auditory information. Bushy cells in the anterior ventral cochlear nucleus (AVCN), which receive end bulbs of held from auditory nerve fibers, project to the superior olivary complex through the trapezoid body and intermediate acoustic stria. Other cell types project to the lateral lemniscus and the inferior colliculus directly. [WP,unvetted]." [Wikipedia:Ventral_cochlear_nucleus] subset: uberon_slim synonym: "anterior cochlear nucleus" EXACT [FMA:54621] synonym: "c1281209" EXACT [NIF_GrossAnatomy:birnlex_2567] synonym: "ventral cochlear nucleus" EXACT [FMA:54621] xref: ABA:VCO xref: BM:CV xref: FMA:54621 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bb/Gray760.png/200px-Gray760.png xref: NIF_GrossAnatomy:birnlex_2567 xref: SCTID:280178008 is_a: UBERON:0001720 ! cochlear nucleus [Term] id: UBERON:0002829 name: dorsal cochlear nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_2569-FMA_54624 def: "The dorsal cochlear nucleus (DCN, also known as the 'tuberculum acousticum'), is a cortex-like structure on the dorso-lateral surface of the brainstem. Along with the ventral cochlear nucleus, it forms the cochlear nucleus, where all auditory nerve fibers from the cochlea form their first synapses. [WP,unvetted]." [Wikipedia:Dorsal_cochlear_nucleus] subset: uberon_slim synonym: "dorsal cochlear nucleus" EXACT [FMA:54624] synonym: "dorsal division of cochlear nucleus" EXACT [FMA:54624] synonym: "posterior cochlear nucleus" EXACT [FMA:54624] xref: ABA:DCO xref: BM:Me-CD xref: FMA:54624 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bb/Gray760.png/200px-Gray760.png xref: ncithesaurus:Dorsal_Cochlear_Nucleus xref: NIF_GrossAnatomy:birnlex_2569 xref: SCTID:280179000 is_a: UBERON:0001720 ! cochlear nucleus [Term] id: UBERON:0002830 name: anteroventral cochlear nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_2572-FMA_72571 synonym: "anterior part of anterior cochlear nucleus" EXACT [NIF_GrossAnatomy:birnlex_2572] synonym: "anteroventral auditory nucleus" EXACT [FMA:72571] synonym: "nucleus magnocellularis" EXACT [NIF_GrossAnatomy:birnlex_2572] xref: FMA:72571 xref: NIF_GrossAnatomy:birnlex_2572 is_a: UBERON:0001720 ! cochlear nucleus [Term] id: UBERON:0002831 name: posteroventral cochlear nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_2573-FMA_72572 synonym: "posterior part of anterior cochlear nucleus" EXACT [NIF_GrossAnatomy:birnlex_2573] xref: FMA:72572 xref: NIF_GrossAnatomy:birnlex_2573 is_a: UBERON:0001720 ! cochlear nucleus [Term] id: UBERON:0002832 name: ventral nucleus of trapezoid body alt_id: UBERON:NIF_GrossAnatomy_birnlex_2576-FMA_72477 synonym: "anterior nucleus of trapezoid body" EXACT [FMA:72477] synonym: "nucleus anterior corporis trapezoidei" EXACT [FMA:72477, FMA:TA] xref: FMA:72477 xref: NIF_GrossAnatomy:birnlex_2576 xref: SCTID:369020000 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter is_a: UBERON:0007247 ! implied link automatically realized ! superior olivary nucleus is_a: UBERON:0007633 ! nucleus of trapezoid body relationship: part_of UBERON:0002128 ! superior olivary complex [Term] id: UBERON:0002833 name: medial nucleus of trapezoid body alt_id: UBERON:NIF_GrossAnatomy_birnlex_2595-FMA_75732 xref: FMA:75732 xref: NIF_GrossAnatomy:birnlex_2595 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter is_a: UBERON:0007633 ! nucleus of trapezoid body [Term] id: UBERON:0002834 name: cervical dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2599-FMA_6005 synonym: "cervical dorsal root ganglion" EXACT [FMA:6005] synonym: "cervical spinal ganglion" EXACT [FMA:6005] xref: FMA:6005 xref: NIF_GrossAnatomy:birnlex_2599 xref: SCTID:278325008 is_a: UBERON:0000044 ! dorsal root ganglion [Term] id: UBERON:0002835 name: thoracic dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2600-FMA_6006 def: "A dorsal root ganglion that is part of a thorax [Obol]." [OBOL:automatic] synonym: "dorsal root ganglion of thorax" EXACT [OBOL:automatic] synonym: "ganglion of dorsal root of thorax" EXACT [OBOL:automatic] synonym: "ganglion spinalis of thorax" EXACT [OBOL:automatic] synonym: "thoracic dorsal root ganglion" EXACT [FMA:6006] synonym: "thoracic spinal ganglion" EXACT [FMA:6006] synonym: "thorax dorsal root ganglion" EXACT [OBOL:automatic] synonym: "thorax ganglion of dorsal root" EXACT [OBOL:automatic] synonym: "thorax ganglion spinalis" EXACT [OBOL:automatic] xref: FMA:6006 xref: NIF_GrossAnatomy:birnlex_2600 xref: SCTID:278326009 is_a: UBERON:0000044 ! dorsal root ganglion is_a: UBERON:0000961 ! thoracic ganglion relationship: part_of UBERON:0000915 intersection_of: UBERON:0000044 ! dorsal root ganglion intersection_of: part_of UBERON:0000915 ! thoracic segment of trunk [Term] id: UBERON:0002836 name: lumbar dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2601-FMA_6007 def: "the group of nerve cell bodies located on the dorsal spinal roots within the vertebral column at the level of the lumbar vertebrae." [MP:0006404] synonym: "lumbar dorsal root ganglion" EXACT [FMA:6007] synonym: "lumbar spinal ganglion" EXACT [FMA:6007] xref: FMA:6007 xref: NIF_GrossAnatomy:birnlex_2601 xref: SCTID:278327000 is_a: UBERON:0000044 ! dorsal root ganglion [Term] id: UBERON:0002837 name: sacral dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2602-FMA_6008 synonym: "sacral dorsal root ganglion" EXACT [FMA:6008] synonym: "sacral spinal ganglion" EXACT [FMA:6008] xref: FMA:6008 xref: NIF_GrossAnatomy:birnlex_2602 xref: SCTID:278328005 is_a: UBERON:0000044 ! dorsal root ganglion [Term] id: UBERON:0002838 name: first cervical dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2603-FMA_6010 subset: defined_by_ordinal_series synonym: "first cervical dorsal root ganglion" EXACT [FMA:6010] synonym: "first cervical spinal ganglion" EXACT [FMA:6010] xref: EMAPA:25144 xref: FMA:6010 xref: NIF_GrossAnatomy:birnlex_2603 is_a: UBERON:0002834 ! cervical dorsal root ganglion [Term] id: UBERON:0002839 name: second cervical dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2604-FMA_6315 subset: defined_by_ordinal_series synonym: "second cervical dorsal root ganglion" EXACT [FMA:6315] synonym: "second cervical spinal ganglion" EXACT [FMA:6315] xref: EMAPA:25155 xref: FMA:6315 xref: NIF_GrossAnatomy:birnlex_2604 is_a: UBERON:0002834 ! cervical dorsal root ganglion [Term] id: UBERON:0002840 name: third cervical dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2605-FMA_6316 subset: defined_by_ordinal_series synonym: "third cervical dorsal root ganglion" EXACT [FMA:6316] synonym: "third cervical spinal ganglion" EXACT [FMA:6316] xref: EMAPA:25156 xref: FMA:6316 xref: NIF_GrossAnatomy:birnlex_2605 is_a: UBERON:0002834 ! cervical dorsal root ganglion [Term] id: UBERON:0002841 name: fourth cervical dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2606-FMA_6317 subset: defined_by_ordinal_series synonym: "fourth cervical dorsal root ganglion" EXACT [FMA:6317] synonym: "fourth cervical spinal ganglion" EXACT [FMA:6317] xref: EMAPA:25157 xref: FMA:6317 xref: NIF_GrossAnatomy:birnlex_2606 is_a: UBERON:0002834 ! cervical dorsal root ganglion [Term] id: UBERON:0002842 name: fifth cervical dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2607-FMA_6318 subset: defined_by_ordinal_series synonym: "fifth cervical dorsal root ganglion" EXACT [FMA:6318] synonym: "fifth cervical spinal ganglion" EXACT [FMA:6318] xref: EMAPA:25158 xref: FMA:6318 xref: NIF_GrossAnatomy:birnlex_2607 is_a: UBERON:0002834 ! cervical dorsal root ganglion [Term] id: UBERON:0002843 name: seventh cervical dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2609-FMA_6360 subset: defined_by_ordinal_series synonym: "seventh cervical dorsal root ganglion" EXACT [FMA:6360] synonym: "seventh cervical spinal ganglion" EXACT [FMA:6360] xref: EMAPA:25160 xref: FMA:6360 xref: NIF_GrossAnatomy:birnlex_2609 is_a: UBERON:0002834 ! cervical dorsal root ganglion [Term] id: UBERON:0002844 name: eighth cervical dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2610-FMA_6361 subset: defined_by_ordinal_series synonym: "eighth cervical dorsal root ganglion" EXACT [FMA:6361] synonym: "eighth cervical spinal ganglion" EXACT [FMA:6361] xref: FMA:6361 xref: NIF_GrossAnatomy:birnlex_2610 is_a: UBERON:0002834 ! cervical dorsal root ganglion [Term] id: UBERON:0002845 name: first thoracic dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2611-FMA_6321 subset: defined_by_ordinal_series synonym: "first thoracic dorsal root ganglion" EXACT [FMA:6321] synonym: "first thoracic spinal ganglion" EXACT [FMA:6321] xref: EMAPA:25174 xref: FMA:6321 xref: NIF_GrossAnatomy:birnlex_2611 is_a: UBERON:0002835 ! thoracic dorsal root ganglion [Term] id: UBERON:0002846 name: second thoracic dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2612-FMA_6322 subset: defined_by_ordinal_series synonym: "second thoracic dorsal root ganglion" EXACT [FMA:6322] synonym: "second thoracic spinal ganglion" EXACT [FMA:6322] xref: EMAPA:25175 xref: FMA:6322 xref: NIF_GrossAnatomy:birnlex_2612 is_a: UBERON:0002835 ! thoracic dorsal root ganglion [Term] id: UBERON:0002847 name: third thoracic dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2613-FMA_6323 subset: defined_by_ordinal_series synonym: "third thoracic dorsal root ganglion" EXACT [FMA:6323] synonym: "third thoracic spinal ganglion" EXACT [FMA:6323] xref: EMAPA:25176 xref: FMA:6323 xref: NIF_GrossAnatomy:birnlex_2613 is_a: UBERON:0002835 ! thoracic dorsal root ganglion [Term] id: UBERON:0002848 name: fifth thoracic dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2615-FMA_6325 subset: defined_by_ordinal_series synonym: "fifth thoracic dorsal root ganglion" EXACT [FMA:6325] synonym: "fifth thoracic spinal ganglion" EXACT [FMA:6325] xref: EMAPA:25179 xref: FMA:6325 xref: NIF_GrossAnatomy:birnlex_2615 is_a: UBERON:0002835 ! thoracic dorsal root ganglion [Term] id: UBERON:0002849 name: sixth thoracic dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2616-FMA_6326 subset: defined_by_ordinal_series synonym: "sixth thoracic dorsal root ganglion" EXACT [FMA:6326] synonym: "sixth thoracic spinal ganglion" EXACT [FMA:6326] xref: EMAPA:25178 xref: FMA:6326 xref: NIF_GrossAnatomy:birnlex_2616 is_a: UBERON:0002835 ! thoracic dorsal root ganglion [Term] id: UBERON:0002850 name: seventh thoracic dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2617-FMA_6327 subset: defined_by_ordinal_series synonym: "seventh thoracic dorsal root ganglion" EXACT [FMA:6327] synonym: "seventh thoracic spinal ganglion" EXACT [FMA:6327] xref: EMAPA:25180 xref: FMA:6327 xref: NIF_GrossAnatomy:birnlex_2617 is_a: UBERON:0002835 ! thoracic dorsal root ganglion [Term] id: UBERON:0002851 name: eighth thoracic dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2618-FMA_6328 subset: defined_by_ordinal_series synonym: "eighth thoracic dorsal root ganglion" EXACT [FMA:6328] synonym: "eighth thoracic spinal ganglion" EXACT [FMA:6328] xref: EMAPA:25181 xref: FMA:6328 xref: NIF_GrossAnatomy:birnlex_2618 is_a: UBERON:0002835 ! thoracic dorsal root ganglion [Term] id: UBERON:0002852 name: ninth thoracic dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2619-FMA_6329 subset: defined_by_ordinal_series synonym: "ninth thoracic dorsal root ganglion" EXACT [FMA:6329] synonym: "ninth thoracic spinal ganglion" EXACT [FMA:6329] xref: EMAPA:25182 xref: FMA:6329 xref: NIF_GrossAnatomy:birnlex_2619 is_a: UBERON:0002835 ! thoracic dorsal root ganglion [Term] id: UBERON:0002853 name: tenth thoracic dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2620-FMA_6330 subset: defined_by_ordinal_series synonym: "tenth thoracic dorsal root ganglion" EXACT [FMA:6330] synonym: "tenth thoracic spinal ganglion" EXACT [FMA:6330] xref: EMAPA:25183 xref: FMA:6330 xref: NIF_GrossAnatomy:birnlex_2620 is_a: UBERON:0002835 ! thoracic dorsal root ganglion [Term] id: UBERON:0002854 name: eleventh thoracic dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2621-FMA_6331 subset: defined_by_ordinal_series synonym: "eleventh thoracic dorsal root ganglion" EXACT [FMA:6331] synonym: "eleventh thoracic spinal ganglion" EXACT [FMA:6331] xref: EMAPA:25184 xref: FMA:6331 xref: NIF_GrossAnatomy:birnlex_2621 is_a: UBERON:0002835 ! thoracic dorsal root ganglion [Term] id: UBERON:0002855 name: twelfth thoracic dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2622-FMA_6332 subset: defined_by_ordinal_series synonym: "twelfth thoracic dorsal root ganglion" EXACT [FMA:6332] synonym: "twelfth thoracic spinal ganglion" EXACT [FMA:6332] xref: EMAPA:25185 xref: FMA:6332 xref: NIF_GrossAnatomy:birnlex_2622 is_a: UBERON:0002835 ! thoracic dorsal root ganglion [Term] id: UBERON:0002856 name: second lumbar dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2623-FMA_6336 subset: defined_by_ordinal_series synonym: "second lumbar dorsal root ganglion" EXACT [FMA:6336] synonym: "second lumbar spinal ganglion" EXACT [FMA:6336] xref: EMAPA:25165 xref: FMA:6336 xref: NIF_GrossAnatomy:birnlex_2623 is_a: UBERON:0002836 ! lumbar dorsal root ganglion [Term] id: UBERON:0002857 name: first lumbar dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2624-FMA_6335 subset: defined_by_ordinal_series synonym: "first lumbar dorsal root ganglion" EXACT [FMA:6335] synonym: "first lumbar spinal ganglion" EXACT [FMA:6335] xref: EMAPA:25164 xref: FMA:6335 xref: NIF_GrossAnatomy:birnlex_2624 is_a: UBERON:0002836 ! lumbar dorsal root ganglion [Term] id: UBERON:0002858 name: third lumbar dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2625-FMA_6337 subset: defined_by_ordinal_series synonym: "third lumbar dorsal root ganglion" EXACT [FMA:6337] synonym: "third lumbar spinal ganglion" EXACT [FMA:6337] xref: EMAPA:25166 xref: FMA:6337 xref: NIF_GrossAnatomy:birnlex_2625 is_a: UBERON:0002836 ! lumbar dorsal root ganglion [Term] id: UBERON:0002859 name: fifth lumbar dorsal root ganglion alt_id: UBERON:0003944 alt_id: UBERON:NIF_GrossAnatomy_birnlex_2627-FMA_6339 def: "the group of nerve cell bodies located on the dorsal spinal roots within the vertebral column at the level of the fifth lumbar vertebra" [MP:0001022] subset: defined_by_ordinal_series synonym: "fifth lumbar dorsal root ganglion" EXACT [FMA:6339] synonym: "fifth lumbar spinal ganglion" EXACT [FMA:6339] synonym: "L5 dorsal root ganglion" EXACT [MP:0001022] xref: EMAPA:25168 xref: FMA:6339 xref: NIF_GrossAnatomy:birnlex_2627 is_a: UBERON:0002836 ! lumbar dorsal root ganglion [Term] id: UBERON:0002860 name: first sacral dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2628-FMA_6342 subset: defined_by_ordinal_series synonym: "first sacral dorsal root ganglion" EXACT [FMA:6342] synonym: "first sacral spinal ganglion" EXACT [FMA:6342] xref: EMAPA:25170 xref: FMA:6342 xref: NIF_GrossAnatomy:birnlex_2628 is_a: UBERON:0002837 ! sacral dorsal root ganglion [Term] id: UBERON:0002861 name: second sacral dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2629-FMA_6343 subset: defined_by_ordinal_series synonym: "second sacral dorsal root ganglion" EXACT [FMA:6343] synonym: "second sacral spinal ganglion" EXACT [FMA:6343] xref: EMAPA:25171 xref: FMA:6343 xref: NIF_GrossAnatomy:birnlex_2629 is_a: UBERON:0002837 ! sacral dorsal root ganglion [Term] id: UBERON:0002862 name: third sacral dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2630-FMA_6344 subset: defined_by_ordinal_series synonym: "third sacral dorsal root ganglion" EXACT [FMA:6344] synonym: "third sacral spinal ganglion" EXACT [FMA:6344] xref: EMAPA:25172 xref: FMA:6344 xref: NIF_GrossAnatomy:birnlex_2630 is_a: UBERON:0002837 ! sacral dorsal root ganglion [Term] id: UBERON:0002863 name: fifth sacral dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2632-FMA_6346 subset: defined_by_ordinal_series synonym: "fifth sacral dorsal root ganglion" EXACT [FMA:6346] synonym: "fifth sacral spinal ganglion" EXACT [FMA:6346] xref: FMA:6346 xref: NIF_GrossAnatomy:birnlex_2632 is_a: UBERON:0002837 ! sacral dorsal root ganglion [Term] id: UBERON:0002864 name: accessory cuneate nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_2634-FMA_72603 def: "The accessory cuneate nucleus is located lateral to the cuneate nucleus in the medulla oblongata at the level of the sensory decussation. It receives input from cervical spinal nerves and transmits that information to the cerebellum. These fibers are called cuneocerebellar (cuneate nucleus > cerebellum) fibers. In this function, the accessory cuneate nucleus is comparable to the upper extremity portion of the posterior spinocerebellar tract. [WP,unvetted]." [Wikipedia:Accessory_cuneate_nucleus] subset: uberon_slim synonym: "external cuneate nucleus" EXACT [FMA:72603] synonym: "lateral cuneate nucleus" EXACT [FMA:72603] synonym: "nucleus of corpus restiforme" EXACT [FMA:72603] xref: ABA:ECU xref: BM:Me-CX xref: EV:0100285 xref: FMA:72603 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/94/Gray694.png/200px-Gray694.png xref: NIF_GrossAnatomy:birnlex_2634 xref: SCTID:15575006 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: spatially_disjoint_from UBERON:0002126 {source="ABA"} ! solitary tract nuclear complex relationship: spatially_disjoint_from UBERON:0002162 {source="ABA"} ! area postrema relationship: spatially_disjoint_from UBERON:0002591 {source="ABA"} ! oral part of spinal trigeminal nucleus relationship: spatially_disjoint_from UBERON:0002610 {source="ABA"} ! cochlear nuclear complex relationship: spatially_disjoint_from UBERON:0002866 {source="ABA"} ! caudal part of spinal trigeminal nucleus relationship: spatially_disjoint_from UBERON:0002873 {source="ABA"} ! interpolar part of spinal trigeminal nucleus relationship: spatially_disjoint_from UBERON:0007633 {source="ABA"} ! nucleus of trapezoid body [Term] id: UBERON:0002865 name: arcuate nucleus of medulla alt_id: UBERON:NIF_GrossAnatomy_birnlex_2635-FMA_72609 def: "An arcuate nucleus of hypothalamus that is part of a medulla [Obol]." [OBOL:automatic] synonym: "arcuate hypothalamic nucleus of medulla" EXACT [OBOL:automatic] synonym: "arcuate nucleus of hypothalamus of medulla" EXACT [OBOL:automatic] synonym: "arcuate nucleus-1" EXACT [FMA:72609] synonym: "arcuate nucleus-2 of medulla" EXACT [OBOL:automatic] synonym: "arcuate periventricular nucleus of medulla" EXACT [OBOL:automatic] synonym: "infundibular hypothalamic nucleus of medulla" EXACT [OBOL:automatic] synonym: "infundibular nucleus of medulla" EXACT [OBOL:automatic] synonym: "infundibular periventricular nucleus of medulla" EXACT [OBOL:automatic] synonym: "medial arcuate nucleus" EXACT [FMA:72609] synonym: "medulla arcuate hypothalamic nucleus" EXACT [OBOL:automatic] synonym: "medulla arcuate nucleus" EXACT [OBOL:automatic] synonym: "medulla arcuate nucleus of hypothalamus" EXACT [OBOL:automatic] synonym: "medulla arcuate nucleus-2" EXACT [OBOL:automatic] synonym: "medulla arcuate periventricular nucleus" EXACT [OBOL:automatic] synonym: "medulla infundibular hypothalamic nucleus" EXACT [OBOL:automatic] synonym: "medulla infundibular nucleus" EXACT [OBOL:automatic] synonym: "medulla infundibular periventricular nucleus" EXACT [OBOL:automatic] synonym: "nucleus arciformis pyramidalis" EXACT [NIF_GrossAnatomy:birnlex_2635] xref: FMA:72609 xref: NIF_GrossAnatomy:birnlex_2635 is_a: UBERON:0001932 ! implied link automatically realized ! arcuate nucleus of hypothalamus is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0000958 intersection_of: UBERON:0001932 ! arcuate nucleus of hypothalamus intersection_of: part_of UBERON:0000958 ! medulla [Term] id: UBERON:0002866 name: caudal part of spinal trigeminal nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_2637-FMA_72606 synonym: "caudal nucleus" EXACT [NIF_GrossAnatomy:birnlex_2637] synonym: "caudal nucleus (kandell)" EXACT [] synonym: "spinal trigeminal nucleus, caudal part" EXACT [FMA:72606] xref: ABA:SPVC xref: EV:0100235 xref: FMA:72606 xref: MESH:A.08.186.211.132.931.920.927 xref: NIF_GrossAnatomy:birnlex_2637 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001717 ! spinal nucleus of trigeminal nerve relationship: spatially_disjoint_from UBERON:0002126 {source="ABA"} ! solitary tract nuclear complex relationship: spatially_disjoint_from UBERON:0002162 {source="ABA"} ! area postrema relationship: spatially_disjoint_from UBERON:0002591 {source="ABA"} ! oral part of spinal trigeminal nucleus relationship: spatially_disjoint_from UBERON:0002610 {source="ABA"} ! cochlear nuclear complex relationship: spatially_disjoint_from UBERON:0002864 {source="ABA"} ! accessory cuneate nucleus relationship: spatially_disjoint_from UBERON:0002873 {source="ABA"} ! interpolar part of spinal trigeminal nucleus relationship: spatially_disjoint_from UBERON:0007633 {source="ABA"} ! nucleus of trapezoid body [Term] id: UBERON:0002867 name: central gray substance of medulla alt_id: UBERON:NIF_GrossAnatomy_birnlex_2638-FMA_72595 synonym: "central gray matter" EXACT [NIF_GrossAnatomy:birnlex_2638] synonym: "medullary central gray substance" EXACT [FMA:72595] xref: FMA:72595 xref: NIF_GrossAnatomy:birnlex_2638 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter [Term] id: UBERON:0002868 name: commissural nucleus of vagus nerve alt_id: UBERON:NIF_GrossAnatomy_birnlex_2639-FMA_54597 synonym: "commissural nucleus-1" EXACT [FMA:54597] synonym: "nucleus of inferior commissure" EXACT [FMA:54597] synonym: "nucleus of inferior commisure" EXACT [NIF_GrossAnatomy:birnlex_2639] xref: FMA:54597 xref: NIF_GrossAnatomy:birnlex_2639 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter [Term] id: UBERON:0002869 name: diffuse reticular nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_2641-FMA_72598 synonym: "kolloker-fuse nucleus" EXACT [NIF_GrossAnatomy:birnlex_2641] synonym: "nucleus of kolliker-fuse" EXACT [] xref: FMA:72598 xref: NIF_GrossAnatomy:birnlex_2641 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter [Term] id: UBERON:0002870 name: dorsal motor nucleus of vagus nerve alt_id: UBERON:NIF_GrossAnatomy_birnlex_2642-FMA_54592 def: "The dorsal nucleus of the vagus nerve (or posterior motor nucleus of vagus) is a cranial nerve nucleus for the vagus nerve that arises from the floor of the fourth ventricle. It mostly serves parasympathetic vagal functions in the heart, gastrointestinal tract, lungs, and other thoracic and abdominal vagal innervations. [WP,unvetted]." [Wikipedia:Dorsal_motor_nucleus_of_vagus_nerve] subset: uberon_slim synonym: "dorsal efferent nucleus of vagus" EXACT [FMA:54592] synonym: "dorsal motor nucleus of the vagus" RELATED [Wikipedia:Dorsal_nucleus_of_vagus_nerve] synonym: "dorsal motor nucleus of the vagus nerve" RELATED [Wikipedia:Dorsal_nucleus_of_vagus_nerve] synonym: "dorsal motor nucleus of vagus nerve" RELATED [Wikipedia:Dorsal_nucleus_of_vagus_nerve] synonym: "dorsal motor nucleus of vagus X nerve" EXACT [MA:0001036] synonym: "dorsal motor vagal nucleus" RELATED [Wikipedia:Dorsal_nucleus_of_vagus_nerve] synonym: "dorsal nucleus of the vagus nerve" RELATED [Wikipedia:Dorsal_nucleus_of_vagus_nerve] synonym: "dorsal vagal nucleus" EXACT [NIF_GrossAnatomy:birnlex_2642] synonym: "dorsal vagal nucleus" RELATED [Wikipedia:Dorsal_nucleus_of_vagus_nerve] synonym: "nucleus alaris" EXACT [NIF_GrossAnatomy:birnlex_2642] synonym: "posterior nucleus of vagus nerve" RELATED [Wikipedia:Dorsal_nucleus_of_vagus_nerve] synonym: "vagus nucleus" RELATED [Wikipedia:Dorsal_nucleus_of_vagus_nerve] xref: ABA:DMX xref: BM:DX xref: EV:0100287 xref: FMA:54592 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/82/Gray697.png/200px-Gray697.png xref: MA:0001036 xref: ncithesaurus:Dorsal_Nucleus_of_the_Vagus_Nerve xref: NIF_GrossAnatomy:birnlex_2642 xref: SCTID:52884007 is_a: UBERON:0000126 ! cranial nerve nucleus is_a: UBERON:0007635 ! implied link automatically realized ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 {source="MA", source="NIF"} ! medulla oblongata relationship: spatially_disjoint_from UBERON:0001719 {source="ABA"} ! nucleus ambiguus relationship: spatially_disjoint_from UBERON:0002127 {source="ABA"} ! inferior olivary complex relationship: spatially_disjoint_from UBERON:0002154 {source="ABA"} ! lateral reticular nucleus relationship: spatially_disjoint_from UBERON:0002155 {source="ABA"} ! gigantocellular nucleus relationship: spatially_disjoint_from UBERON:0002559 {source="ABA"} ! medullary reticular formation relationship: spatially_disjoint_from UBERON:0002673 {source="ABA"} ! vestibular nuclear complex relationship: spatially_disjoint_from UBERON:0002871 {source="ABA"} ! hypoglossal nucleus relationship: spatially_disjoint_from UBERON:0002872 {source="ABA"} ! inferior salivatory nucleus relationship: spatially_disjoint_from UBERON:0002877 {source="ABA"} ! parasolitary nucleus [Term] id: UBERON:0002871 name: hypoglossal nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_2644-FMA_54505 def: "The hypoglossal nucleus is a cranial nerve nucleus, and it extends the length of the medulla, and being a motor nucleus, is close to the midline. In the open medulla, it is visible as what is known as the hypoglossal trigone, a raised area (medial to the vagal trigone) protruding slightly into the fourth ventricle. In the closed medulla, the gracile and cuneate nuclei lie posteriorly, which means the nucleus is not as close to the back of the medulla as in the open medulla. It is, however, still close to the midline. [WP,unvetted]." [Wikipedia:Hypoglossal_nucleus] subset: uberon_slim synonym: "hypoglossal nerve nucleus" EXACT [FMA:54505] synonym: "hypoglossal nucleus" EXACT [FMA:54505] synonym: "hypoglossal XII nucleus" EXACT [MA:0001039] synonym: "nucleus nervi hypoglossi" EXACT [FMA:54505, FMA:TA] synonym: "nucleus of hypoglossal nerve" EXACT [FMA:54505] synonym: "twelfth cranial nerve nucleus" EXACT [FMA:54505] xref: ABA:XII xref: BM:XII xref: EV:0100286 xref: FMA:54505 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/94/Gray694.png/200px-Gray694.png xref: MA:0001039 xref: ncithesaurus:Hypoglossal_Nucleus xref: ncithesaurus:Nucleus_of_the_Hypoglossal_Nerve xref: NIF_GrossAnatomy:birnlex_2644 xref: OG:0001358 xref: SCTID:47361005 is_a: UBERON:0000126 ! cranial nerve nucleus is_a: UBERON:0007635 ! implied link automatically realized ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 ! medulla oblongata relationship: spatially_disjoint_from UBERON:0001719 {source="ABA"} ! nucleus ambiguus relationship: spatially_disjoint_from UBERON:0002127 {source="ABA"} ! inferior olivary complex relationship: spatially_disjoint_from UBERON:0002154 {source="ABA"} ! lateral reticular nucleus relationship: spatially_disjoint_from UBERON:0002155 {source="ABA"} ! gigantocellular nucleus relationship: spatially_disjoint_from UBERON:0002559 {source="ABA"} ! medullary reticular formation relationship: spatially_disjoint_from UBERON:0002673 {source="ABA"} ! vestibular nuclear complex relationship: spatially_disjoint_from UBERON:0002870 {source="ABA"} ! dorsal motor nucleus of vagus nerve relationship: spatially_disjoint_from UBERON:0002872 {source="ABA"} ! inferior salivatory nucleus relationship: spatially_disjoint_from UBERON:0002877 {source="ABA"} ! parasolitary nucleus [Term] id: UBERON:0002872 name: inferior salivatory nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_2645-FMA_72601 def: "In the brain, the inferior salivatory nucleus is a cluster of neurons controlling the parasympathetic input to the parotid gland. It is one of the components of the glossopharyngeal nerve. [WP,unvetted]." [Wikipedia:Inferior_salivatory_nucleus] subset: uberon_slim synonym: "inferior salivary nucleus" EXACT [GO:0021752] synonym: "inferior salivatary nucleus" EXACT [] xref: ABA:ISN xref: FMA:72601 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a0/Gray843.png/200px-Gray843.png xref: NIF_GrossAnatomy:birnlex_2645 is_a: UBERON:0004133 ! salivatory nucleus relationship: continuous_with UBERON:0001649 ! glossopharyngeal nerve relationship: spatially_disjoint_from UBERON:0001719 {source="ABA"} ! nucleus ambiguus relationship: spatially_disjoint_from UBERON:0002127 {source="ABA"} ! inferior olivary complex relationship: spatially_disjoint_from UBERON:0002154 {source="ABA"} ! lateral reticular nucleus relationship: spatially_disjoint_from UBERON:0002155 {source="ABA"} ! gigantocellular nucleus relationship: spatially_disjoint_from UBERON:0002559 {source="ABA"} ! medullary reticular formation relationship: spatially_disjoint_from UBERON:0002673 {source="ABA"} ! vestibular nuclear complex relationship: spatially_disjoint_from UBERON:0002870 {source="ABA"} ! dorsal motor nucleus of vagus nerve relationship: spatially_disjoint_from UBERON:0002871 {source="ABA"} ! hypoglossal nucleus relationship: spatially_disjoint_from UBERON:0002877 {source="ABA"} ! parasolitary nucleus [Term] id: UBERON:0002873 name: interpolar part of spinal trigeminal nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_2646-FMA_235324 xref: ABA:SPVI xref: FMA:235324 xref: NIF_GrossAnatomy:birnlex_2646 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001717 ! spinal nucleus of trigeminal nerve relationship: spatially_disjoint_from UBERON:0002126 {source="ABA"} ! solitary tract nuclear complex relationship: spatially_disjoint_from UBERON:0002162 {source="ABA"} ! area postrema relationship: spatially_disjoint_from UBERON:0002591 {source="ABA"} ! oral part of spinal trigeminal nucleus relationship: spatially_disjoint_from UBERON:0002610 {source="ABA"} ! cochlear nuclear complex relationship: spatially_disjoint_from UBERON:0002864 {source="ABA"} ! accessory cuneate nucleus relationship: spatially_disjoint_from UBERON:0002866 {source="ABA"} ! caudal part of spinal trigeminal nucleus relationship: spatially_disjoint_from UBERON:0007633 {source="ABA"} ! nucleus of trapezoid body [Term] id: UBERON:0002874 name: lateral pericuneate nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_2647-FMA_72604 xref: FMA:72604 xref: NIF_GrossAnatomy:birnlex_2647 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter [Term] id: UBERON:0002875 name: medial pericuneate nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_2648-FMA_72605 xref: FMA:72605 xref: NIF_GrossAnatomy:birnlex_2648 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter [Term] id: UBERON:0002876 name: nucleus intercalatus alt_id: UBERON:0002878 alt_id: UBERON:NIF_GrossAnatomy_birnlex_2651-FMA_72597 comment: two NIF classes with the same name synonym: "intercalated nucleus of medulla" EXACT [FMA:72597] synonym: "nucleus intercalatus of medulla" EXACT [FMA:72597] synonym: "nucleus of staderini" EXACT [] synonym: "nucleus staderini" EXACT [NIF_GrossAnatomy:birnlex_2651] synonym: "nucleus staderini" EXACT [NIF_GrossAnatomy:birnlex_2654] xref: EV:0100291 xref: FMA:72597 xref: NIF_GrossAnatomy:birnlex_2651 xref: NIF_GrossAnatomy:birnlex_2654 xref: SCTID:369077004 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter [Term] id: UBERON:0002877 name: parasolitary nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_2653-FMA_77091 synonym: "nucleus fasciculus solitarius" EXACT [NIF_GrossAnatomy:birnlex_2653] synonym: "nucleus juxtasolitarius" EXACT [NIF_GrossAnatomy:birnlex_2653] xref: ABA:PAS xref: FMA:77091 xref: NIF_GrossAnatomy:birnlex_2653 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: spatially_disjoint_from UBERON:0001719 {source="ABA"} ! nucleus ambiguus relationship: spatially_disjoint_from UBERON:0002127 {source="ABA"} ! inferior olivary complex relationship: spatially_disjoint_from UBERON:0002154 {source="ABA"} ! lateral reticular nucleus relationship: spatially_disjoint_from UBERON:0002155 {source="ABA"} ! gigantocellular nucleus relationship: spatially_disjoint_from UBERON:0002559 {source="ABA"} ! medullary reticular formation relationship: spatially_disjoint_from UBERON:0002673 {source="ABA"} ! vestibular nuclear complex relationship: spatially_disjoint_from UBERON:0002870 {source="ABA"} ! dorsal motor nucleus of vagus nerve relationship: spatially_disjoint_from UBERON:0002871 {source="ABA"} ! hypoglossal nucleus relationship: spatially_disjoint_from UBERON:0002872 {source="ABA"} ! inferior salivatory nucleus [Term] id: UBERON:0002879 name: peritrigeminal nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_2655-FMA_72600 xref: FMA:72600 xref: NIF_GrossAnatomy:birnlex_2655 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter [Term] id: UBERON:0002880 name: pontobulbar nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_2656-FMA_72608 synonym: "nucleus of circumolivary bundle" EXACT [FMA:72608] synonym: "pontobulbar body" EXACT [FMA:72608] xref: FMA:72608 xref: NIF_GrossAnatomy:birnlex_2656 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter [Term] id: UBERON:0002881 name: sublingual nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_2657-FMA_68574 def: "In the substance of the formatio reticularis are two small nuclei of gray matter. The one near the dorsal aspect of the hilus of the inferior olivary nucleus is called the Sublingual nucleus (inferior central nucleus, nucleus of Roller.) [WP,unvetted]." [Wikipedia:Sublingual_nucleus] subset: uberon_slim synonym: "inferior central nucleus" RELATED INCONSISTENT [Wikipedia:Sublingual_nucleus] synonym: "nucleus of roller" RELATED [Wikipedia:Sublingual_nucleus] synonym: "nucleus of roller" EXACT [FMA:68574] xref: ABA:NR xref: FMA:68574 xref: NIF_GrossAnatomy:birnlex_2657 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: spatially_disjoint_from UBERON:0002160 {source="ABA"} ! nucleus prepositus [Term] id: UBERON:0002882 name: supraspinal nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_2658-FMA_74507 xref: BM:SSp xref: EV:0100282 xref: FMA:74507 xref: NIF_GrossAnatomy:birnlex_2658 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter [Term] id: UBERON:0002883 name: central amygdaloid nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_2682-FMA_74047 synonym: "amygdala central nucleus" RELATED [BTO:0002686] synonym: "central nucleus of amygda" EXACT [NIF_GrossAnatomy:birnlex_2682] synonym: "central nucleus of amygdala" EXACT [FMA:74047] synonym: "nucleus amygdalae centralis" RELATED [BTO:0002686] xref: BM:Tel-Am-ACE xref: BTO:0002686 xref: EV:0100191 xref: FMA:74047 xref: MA:0002923 xref: NIF_GrossAnatomy:birnlex_2682 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0009663 ! implied link automatically realized ! telencephalic nucleus relationship: part_of UBERON:0001876 ! amygdala [Term] id: UBERON:0002884 name: intercalated amygdaloid nuclei alt_id: UBERON:NIF_GrossAnatomy_birnlex_2683-FMA_61868 synonym: "intercalated amygdaloid nuclei" EXACT [FMA:61868] synonym: "intercalated amygdaloid nucleus" EXACT [FMA:61868] synonym: "intercalated masses of nucleus amygdaloideus" EXACT [FMA:61868] synonym: "intercalated nuclei of amygdala" EXACT [FMA:61868] synonym: "intercalated nucleus of the amygdala" EXACT [NIF_GrossAnatomy:birnlex_2683] synonym: "massa intercalata" EXACT [NIF_GrossAnatomy:birnlex_2683] synonym: "massa intercalata of amygdala" EXACT [NIF_GrossAnatomy:birnlex_2683] xref: FMA:61868 xref: MA:0002925 xref: NIF_GrossAnatomy:birnlex_2683 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0009663 ! implied link automatically realized ! telencephalic nucleus relationship: part_of UBERON:0001876 ! amygdala [Term] id: UBERON:0002885 name: accessory basal amygdaloid nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_2686-FMA_61867 synonym: "accessory basal nucleus of amygdala" EXACT [NIF_GrossAnatomy:birnlex_2686] synonym: "basal amygdaloid nucleus, medial part" EXACT [NIF_GrossAnatomy:birnlex_2686] synonym: "basomedial nucleus (de olmos)" EXACT [NIF_GrossAnatomy:birnlex_2686] xref: FMA:61867 xref: NIF_GrossAnatomy:birnlex_2686 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0009663 ! implied link automatically realized ! telencephalic nucleus relationship: part_of UBERON:0001876 ! amygdala [Term] id: UBERON:0002886 name: lateral amygdaloid nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_2687-FMA_61866 synonym: "lateral nucleus of amygdala" EXACT [FMA:61866] synonym: "lateral principal nucleus of amygdala" EXACT [FMA:61866] synonym: "nucleus amygdalae lateralis" RELATED [BTO:0002704] xref: ABA:LA xref: BM:Tel-Am-ALA xref: BTO:0002704 xref: FMA:61866 xref: MA:0002926 xref: NIF_GrossAnatomy:birnlex_2687 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0009663 ! implied link automatically realized ! telencephalic nucleus relationship: part_of UBERON:0001876 ! amygdala [Term] id: UBERON:0002887 name: basal amygdaloid nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_2692-FMA_68855 synonym: "basolateral amygaloid nucleus" EXACT [NIF_GrossAnatomy:birnlex_2692] synonym: "basolateral amygdalar nucleus" EXACT [NIF_GrossAnatomy:birnlex_2692] synonym: "basolateral amygdaloid nucleus" EXACT [FMA:68855] synonym: "basolateral nucleus (de olmos)" EXACT [] synonym: "intermediate principal nucleus" EXACT [FMA:68855] synonym: "nucleus amygdalae basalis lateralis" EXACT [FMA:68855, FMA:TA] xref: ABA:BLA xref: FMA:68855 xref: MA:0002921 xref: NIF_GrossAnatomy:birnlex_2692 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0009663 ! implied link automatically realized ! telencephalic nucleus relationship: part_of UBERON:0001876 ! amygdala relationship: spatially_disjoint_from UBERON:0002023 {source="ABA"} ! claustrum [Term] id: UBERON:0002888 name: lateral part of basal amygdaloid nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_2695-FMA_68857 synonym: "lateral basal nucleus of amygdala" EXACT [NIF_GrossAnatomy:birnlex_2695] synonym: "lateral basal nucleus of the amygdala" EXACT [FMA:68857] synonym: "lateral division of basal nucleus" EXACT [NIF_GrossAnatomy:birnlex_2695] synonym: "lateral division of the basal nucleus" EXACT [FMA:68857] xref: FMA:68857 xref: NIF_GrossAnatomy:birnlex_2695 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0002887 ! basal amygdaloid nucleus [Term] id: UBERON:0002889 name: medial part of basal amygdaloid nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_2696-FMA_68858 synonym: "basomedial amygdalar nucleus" EXACT [ABA:BMA] synonym: "basomedial amygdaloid nucleus" EXACT [FMA:68858, MA:0002922] synonym: "medial basal nucleus of amygdala" EXACT [FMA:68858] synonym: "medial division of basal nucleus" EXACT [FMA:68858] synonym: "nucleus amygdalae basalis medialis" EXACT [FMA:68858, FMA:TA] xref: ABA:BMA xref: FMA:68858 xref: MA:0002922 xref: NIF_GrossAnatomy:birnlex_2696 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0002887 ! basal amygdaloid nucleus [Term] id: UBERON:0002890 name: anterior amygdaloid area alt_id: UBERON:NIF_GrossAnatomy_birnlex_2698-FMA_61861 synonym: "anterior amygaloid area" EXACT [NIF_GrossAnatomy:birnlex_2698] synonym: "anterior amygdalar area" EXACT [NIF_GrossAnatomy:birnlex_2698] xref: ABA:AAA xref: BM:Tel-Am-AAA xref: FMA:61861 xref: MA:0002919 xref: NIF_GrossAnatomy:birnlex_2698 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001876 ! amygdala [Term] id: UBERON:0002891 name: cortical amygdaloid nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_2700-FMA_61862 synonym: "nucleus amygdalae corticalis" RELATED [BTO:0002703] synonym: "posterior cortical amygdaloid nucleus" EXACT [NIF_GrossAnatomy:birnlex_2700] synonym: "posterior cortical nucleus of amygdala" EXACT [FMA:61862] xref: BTO:0002703 xref: EV:0100193 xref: FMA:61862 xref: MA:0002924 xref: NIF_GrossAnatomy:birnlex_2700 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0009663 ! implied link automatically realized ! telencephalic nucleus relationship: part_of UBERON:0001876 ! amygdala [Term] id: UBERON:0002892 name: medial amygdaloid nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_2701-FMA_74046 synonym: "medial amygalar nucleus" EXACT [NIF_GrossAnatomy:birnlex_2701] synonym: "medial nucleus of amygdala" EXACT [FMA:74046] synonym: "nucleus amygdalae medialis" RELATED [BTO:0002702] xref: BM:Tel-Am-AME xref: BTO:0002702 xref: EV:0100192 xref: FMA:74046 xref: MA:0002927 xref: NIF_GrossAnatomy:birnlex_2701 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0009663 ! implied link automatically realized ! telencephalic nucleus relationship: part_of UBERON:0001876 ! amygdala [Term] id: UBERON:0002893 name: nucleus of lateral olfactory tract alt_id: UBERON:NIF_GrossAnatomy_birnlex_2702-FMA_61865 synonym: "lateral olfactory tract nucleus" EXACT [FMA:61865] synonym: "nucleus of the lateral olfactory tract (ganser)" EXACT [NIF_GrossAnatomy:birnlex_2702] xref: ABA:NLOT xref: BM:Tel-NLOT xref: FMA:61865 xref: NIF_GrossAnatomy:birnlex_2702 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0009663 ! implied link automatically realized ! telencephalic nucleus relationship: part_of UBERON:0001876 ! amygdala relationship: spatially_disjoint_from UBERON:0002266 {source="ABA"} ! anterior olfactory nucleus relationship: spatially_disjoint_from UBERON:0002590 {source="ABA"} ! prepyriform area relationship: spatially_disjoint_from UBERON:0004069 {source="ABA"} ! accessory olfactory bulb [Term] id: UBERON:0002894 name: olfactory cortex alt_id: UBERON:NIF_GrossAnatomy_birnlex_2707-MA_0000193 def: "The olfactory cortex is involved in the perception of smell. It receives input from the olfactory bulb and is responsible for the identification of odors[GO]." [Wikipedia:Olfactory_cortex] comment: Editor note - consider relationship: receives_input_from UBERON:0002264 {source="GO"} subset: uberon_slim synonym: "archaeocortex" RELATED [BTO:0001446] synonym: "archeocortex" RELATED [BTO:0001446] synonym: "olfactory lobe" RELATED [MA:0000193] xref: BTO:0001446 xref: EHDAA:5482 xref: EHDAA2:0001289 xref: EMAPA:17779 xref: MA:0000193 xref: ncithesaurus:Olfactory_Lobe xref: NIF_GrossAnatomy:birnlex_2707 xref: OG:0000325 is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon relationship: part_of UBERON:0005366 ! olfactory lobe [Term] id: UBERON:0002895 name: secondary olfactory cortex alt_id: UBERON:NIF_GrossAnatomy_birnlex_2709-FMA_72356 def: "Brodmann's area 28; major gateway for neocortical input to the hippocampus; origin of the perforant pathway; a component of the medial temporal lobe memory system. (CSP) * The cytoarchitecturally well-defined area of multilaminate cerebral cortex on the medial aspect of the parahippocampal gyrus, immediately caudal to the olfactory cortex of the uncus. The entorhinal cortex is the origin of the major neural fiber system afferent to the hippocampus, the so-called PERFORANT PATHWAY. (Stedman, 25th ed)." [NIF_GrossAnatomy:birnlex_2709] comment: FMA considers this a syn of entorhinal cortex. See also brodman definition subset: uberon_slim synonym: "area 28 of Brodmann" EXACT [] synonym: "area 28 of Brodmann (crosby)" EXACT [] synonym: "Brodmann area 28" EXACT [] synonym: "entorhinal cortex" RELATED [FMA:72356] synonym: "secondary olfactory areas" EXACT [NIF_GrossAnatomy:birnlex_2709] synonym: "secondary olfactory cortex" EXACT [FMA:72356] synonym: "secondary olfactory cortical area (carpenter)" EXACT [] xref: BTO:0002650 xref: BTO:0004345 xref: EV:0100179 xref: FMA:68625 xref: NIF_GrossAnatomy:birnlex_2709 is_a: UBERON:0002616 ! regional part of brain [Term] id: UBERON:0002896 name: telodiencephalic fissure alt_id: UBERON:NIF_GrossAnatomy_birnlex_4001-FMA_83726 synonym: "telo-diencephalic fissure" EXACT [FMA:83726] xref: FMA:83726 xref: NIF_GrossAnatomy:birnlex_4001 is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0002897 name: cistern of lamina terminalis alt_id: UBERON:NIF_GrossAnatomy_birnlex_4002-FMA_74516 synonym: "cisterna lamina terminalis" EXACT [NIF_GrossAnatomy:birnlex_4002] synonym: "lamina terminalis cistern" EXACT [FMA:74516] xref: FMA:74516 xref: ncithesaurus:Lamina_Terminalis_Cistern xref: NIF_GrossAnatomy:birnlex_4002 xref: SCTID:12692002 is_a: UBERON:0004050 ! subarachnoid cistern [Term] id: UBERON:0002898 name: chiasmatic cistern alt_id: UBERON:NIF_GrossAnatomy_birnlex_4003-FMA_74515 def: "In front, the cisterna interpeduncularis extends forward across the optic chiasma, forming the cistern of chiasma or chiasmatic cistern, and on to the upper surface of the corpus callosum, for the arachnoid stretches across from one cerebral hemisphere to the other immediately beneath the free border of the falx cerebri, and thus leaves a space in which the anterior cerebral arteries are contained. The 'leaf' or extension of the chiasmatic cistern above the chiasma, which is separated from the optic recess of the third ventricle by the thin lamina terminalis, has been called the suprachiasmatic cistern. As spaces filled with freely circulating cerebrospinal fluid, cisterns receive little direct study, but are mentioned in pathological conditions. Cysts and tumors of the lamina terminalis extend into the suprachiasmatic cistern, as can pituitary tumors, or the cistern can be partially or completely effaced by injury and hematoma or by blockage of the cerebral aqueduct. [WP,unvetted]." [Wikipedia:Chiasmatic_cistern] subset: uberon_slim synonym: "cisterna chiasmatica" EXACT [NIF_GrossAnatomy:birnlex_4003] synonym: "cisterna chiasmatis" EXACT [NIF_GrossAnatomy:birnlex_4003] xref: EMAPA:19057 xref: EMAPA:19150 xref: EMAPA:25081 xref: FMA:74515 xref: ncithesaurus:Chiasmatic_Cistern xref: NIF_GrossAnatomy:birnlex_4003 xref: SCTID:47947006 is_a: UBERON:0004050 ! subarachnoid cistern [Term] id: UBERON:0002899 name: hippocampal sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_4004-FMA_83747 def: "The hippocampal sulcus, also known as the hippocampal fissure, is a sulcus that separates the dentate gyrus from the subiculum and the CA1 field in the hippocampus. [WP,unvetted]." [Wikipedia:Hippocampal_sulcus] subset: uberon_slim synonym: "dentate fissure" EXACT [FMA:83747] synonym: "hippocampal fissure" EXACT [FMA:83747] synonym: "sulcus hippocampi" EXACT [NIF_GrossAnatomy:birnlex_4004] xref: FMA:83747 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/31/Hippocampus_%28brain%29.jpg/200px-Hippocampus_%28brain%29.jpg xref: ncithesaurus:Hippocampal_Fissure xref: NIF_GrossAnatomy:birnlex_4004 xref: SCTID:369101000 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002900 name: transverse occipital sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_4013-FMA_83786 synonym: "sulcus occipitalis transversus" EXACT [NIF_GrossAnatomy:birnlex_4013] xref: BTO:0003786 xref: FMA:83786 xref: NIF_GrossAnatomy:birnlex_4013 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002901 name: posterior calcarine sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_4015-FMA_83787 synonym: "postcalcarine sulcus" EXACT [FMA:83787] synonym: "posterior calcarine fissure" EXACT [FMA:83787] synonym: "posterior part of calcarine sulcus" EXACT [FMA:83787] synonym: "sulcus calcarinus posterior" EXACT [NIF_GrossAnatomy:birnlex_4015] xref: FMA:83787 xref: NIF_GrossAnatomy:birnlex_4015 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002902 name: occipital pole alt_id: UBERON:NIF_GrossAnatomy_birnlex_4016-FMA_74892 def: "The anterior end of the hemisphere is named the frontal pole. The posterior end is named the occipital pole. The anterior end of the temporal lobe, the temporal pole. [WP,unvetted]." [Wikipedia:Occipital_pole] subset: uberon_slim synonym: "polus occipitalis" EXACT [NIF_GrossAnatomy:birnlex_4016] synonym: "polus occipitalis cerebri" RELATED [BTO:0001868] xref: BTO:0001868 xref: FMA:74892 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e3/Human_brain_lateral_view_description.JPG/200px-Human_brain_lateral_view_description.JPG xref: NIF_GrossAnatomy:birnlex_4016 xref: SCTID:314160003 is_a: UBERON:0009899 ! implied link automatically realized ! pole of cerebral hemisphere relationship: part_of UBERON:0002021 intersection_of: UBERON:0009899 ! pole of cerebral hemisphere intersection_of: part_of UBERON:0002021 ! occipital lobe relationship: part_of UBERON:0002021 {source="BTO"} ! occipital lobe [Term] id: UBERON:0002903 name: lunate sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_4017-FMA_83788 synonym: "lunate fissure" EXACT [FMA:83788] synonym: "sulcus lunatus" EXACT [NIF_GrossAnatomy:birnlex_4017] synonym: "sulcus simialis" EXACT [NIF_GrossAnatomy:birnlex_4017] xref: BM:Tel-Cx-LUS xref: FMA:83788 xref: ncithesaurus:Lunate_Sulcus xref: NIF_GrossAnatomy:birnlex_4017 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002904 name: lateral occipital sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_4018-FMA_83785 def: "In the occipital lobe, the lateral occipital sulcus extends from behind forward, and divides the lateral surface of the occipital lobe into a superior and an inferior gyrus, which are continuous in front with the parietal and temporal lobes. [WP,unvetted]." [Wikipedia:Lateral_occipital_sulcus] subset: uberon_slim synonym: "sulcus occipitalis lateralis" EXACT [NIF_GrossAnatomy:birnlex_4018] xref: FMA:83785 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2c/Gray727_lateral-occipital_sulcus.svg/200px-Gray727_lateral-occipital_sulcus.svg.png xref: ncithesaurus:Lateral-occipital_Sulcus xref: NIF_GrossAnatomy:birnlex_4018 xref: SCTID:369219003 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002905 name: intralingual sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_4019-FMA_83789 synonym: "sulcus intralingualis" EXACT [NIF_GrossAnatomy:birnlex_4019] xref: FMA:83789 xref: NIF_GrossAnatomy:birnlex_4019 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002906 name: anterior occipital sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_4023-FMA_75758 synonym: "ascending limb of the inferior temporal sulcus" EXACT [NIF_GrossAnatomy:birnlex_4023] synonym: "posterior inferior temporal sulcus" EXACT [NIF_GrossAnatomy:birnlex_4023] synonym: "sulci occipitales superiores" EXACT [NIF_GrossAnatomy:birnlex_4023] synonym: "sulcus annectans" EXACT [NIF_GrossAnatomy:birnlex_4023] synonym: "sulcus occipitalis anterior" EXACT [NIF_GrossAnatomy:birnlex_4023] xref: FMA:75758 xref: NIF_GrossAnatomy:birnlex_4023 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002907 name: superior postcentral sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_4025-FMA_83775 synonym: "postcentral dimple" EXACT [FMA:83775] synonym: "sulcus postcentralis superior" EXACT [NIF_GrossAnatomy:birnlex_4025] xref: FMA:83775 xref: NIF_GrossAnatomy:birnlex_4025 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002908 name: subparietal sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_4026-FMA_83777 synonym: "splenial sulcus" EXACT [FMA:83777] synonym: "sulcus subparietalis" EXACT [NIF_GrossAnatomy:birnlex_4026] synonym: "suprasplenial sulcus" EXACT [FMA:83777] xref: BM:Tel-Cx-SPS xref: FMA:83777 xref: NIF_GrossAnatomy:birnlex_4026 xref: SCTID:279352008 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002909 name: posterior subcentral sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_4027-FMA_83778 synonym: "sulcus subcentralis posterior" EXACT [NIF_GrossAnatomy:birnlex_4027] xref: FMA:83778 xref: NIF_GrossAnatomy:birnlex_4027 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002910 name: posterior ascending limb of lateral sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_4028-FMA_83761 synonym: "ascending terminal ramus of sylvian fissure" EXACT [] synonym: "posterior ascending limb of lateral fissure" EXACT [FMA:83761] synonym: "posterior ramus of lateral cerebral sulcus" EXACT [FMA:83761] synonym: "ramus posterior ascendens fissurae lateralis" EXACT [NIF_GrossAnatomy:birnlex_4028] synonym: "ramus posterior sulci lateralis cerebri" EXACT [FMA:83761, FMA:TA] xref: FMA:83761 xref: NIF_GrossAnatomy:birnlex_4028 is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0002911 name: parietal operculum alt_id: UBERON:NIF_GrossAnatomy_birnlex_4029-FMA_74889 def: "The parietal operculum, forming the superior bank of the sylvian fissure, as studied in the cat, contains the secondary somatosensory representation, 'S-II', and a second somatotopic representation (parietal ventral, or PV). Anatomically, primate S-II receives inputs from area 3 and area 1, and projects to PV and area 7. PV has projections to area 5 and premotor areas. [WP,unvetted]." [Wikipedia:Parietal_operculum] subset: uberon_slim synonym: "operculum parietale" EXACT [NIF_GrossAnatomy:birnlex_4029] xref: FMA:74889 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b3/Operculum.png/200px-Operculum.png xref: NIF_GrossAnatomy:birnlex_4029 xref: SCTID:362353000 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0002912 name: marginal sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_4030-FMA_83773 def: "The marginal sulcus is the portion of the cingulate sulcus adjacent to the paracentral lobule and the precuneus. It is sometimes known as the 'marginal part of the cingulate sulcus'. [WP,unvetted]." [Wikipedia:Marginal_sulcus] subset: uberon_slim synonym: "marginal branch of cingulate sulcus" EXACT [FMA:83773] synonym: "marginal ramus of cingulate sulcus" EXACT [FMA:83773] synonym: "ramus marginalis sulci cingulati" EXACT [NIF_GrossAnatomy:birnlex_4030] synonym: "ramus marginalis sulci cinguli" EXACT [FMA:83773, FMA:TA] xref: FMA:83773 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d0/Gray727_marginal_sulcus.svg/200px-Gray727_marginal_sulcus.svg.png xref: NIF_GrossAnatomy:birnlex_4030 xref: SCTID:279351001 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002913 name: intraparietal sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_4031-FMA_83772 def: "The intraparietal sulcus (IPS) is located on the lateral surface of the parietal lobe, and consists of an oblique and a horizontal portion. The IPS contains a series of functionally distinct subregions that have been intensively investigated using both single cell neurophysiology in primates and human functional neuroimaging. Its principal functions are related to perceptual-motor coordination (for directing eye movements and reaching) and visual attention. The IPS is also thought to play a role in other functions, including processing symbolic numerical information, visuospatial working memory and interpreting the intent of others. [WP,unvetted]." [Wikipedia:Intraparietal_sulcus] subset: uberon_slim synonym: "interparietal fissure" EXACT [FMA:83772] synonym: "intraparietal fissure" EXACT [FMA:83772] synonym: "intraparietal sulcus of Turner" RELATED [BTO:0003787] synonym: "sulcus interparietalis" EXACT [NIF_GrossAnatomy:birnlex_4031] synonym: "sulcus intraparietalis" RELATED [BTO:0003787] synonym: "Turner sulcus" RELATED [BTO:0003787] xref: BM:Tel-Cx-IPS xref: BTO:0003787 xref: FMA:83772 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2a/Gray726_intraparietal_sulcus.svg/200px-Gray726_intraparietal_sulcus.svg.png xref: ncithesaurus:Intraparietal_Sulcus xref: NIF_GrossAnatomy:birnlex_4031 xref: SCTID:279338006 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002914 name: inferior postcentral sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_4032-FMA_83776 synonym: "sulcus postcentralis inferior" EXACT [NIF_GrossAnatomy:birnlex_4032] xref: FMA:83776 xref: NIF_GrossAnatomy:birnlex_4032 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002915 name: postcentral sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_4033-FMA_83774 def: "The postcentral sulcus of the parietal lobe lies parallel to, and behind, the central sulcus in the human brain. (A sulcus is one of the prominent grooves on the surface of the brain. ) The postcentral sulcus divides the postcentral gyrus from the remainder of the parietal lobe. [WP,unvetted]." [Wikipedia:Postcentral_sulcus] subset: uberon_slim synonym: "postcentral fissure of cerebral hemisphere" EXACT [FMA:83774] synonym: "postcentral fissure-1" EXACT [FMA:83774] synonym: "structure of postcentral sulcus" EXACT [NIF_GrossAnatomy:birnlex_4033] synonym: "sulcus postcentralis" EXACT [NIF_GrossAnatomy:birnlex_4033] xref: BM:Tel-Cx-PoCS xref: FMA:83774 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6c/Postcentral_sulcus.png/200px-Postcentral_sulcus.png xref: ncithesaurus:Postcentral_Sulcus xref: NIF_GrossAnatomy:birnlex_4033 xref: SCTID:279339003 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002916 name: central sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_4035-FMA_83752 def: "The central sulcus is a fold in the cerebral cortex of brains in vertebrates. Also called the central fissure, it was originally called the fissure of Rolando or the Rolandic fissure, after Luigi Rolando. The central sulcus is a prominent landmark of the brain, separating the parietal lobe from the frontal lobe and the primary motor cortex from the primary somatosensory cortex. [WP,unvetted]." [Wikipedia:Central_sulcus] subset: uberon_slim synonym: "central cerebral sulcus" EXACT [FMA:83752] synonym: "central fissure" EXACT [FMA:83752] synonym: "central sulcus of rolando" EXACT [] synonym: "fissure of rolando" EXACT [] synonym: "rolandic fissure" EXACT [NIF_GrossAnatomy:birnlex_4035] synonym: "sulcus centralis" EXACT [NIF_GrossAnatomy:birnlex_4035] synonym: "sulcus centralis (rolandi)" EXACT [NIF_GrossAnatomy:birnlex_4035] synonym: "sulcus centralis cerebri" EXACT [NIF_GrossAnatomy:birnlex_4035] synonym: "sulcus of rolando" EXACT [] xref: BM:Tel-Cx-CS xref: FMA:83752 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b6/Central_sulcus.png/200px-Central_sulcus.png xref: ncithesaurus:Central_Sulcus_of_Rolando xref: NIF_GrossAnatomy:birnlex_4035 xref: OpenCyc:Mx4rvjMKxpwpEbGdrcN5Y29ycA xref: SCTID:279340001 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002917 name: regional part of inferior colliculus alt_id: UBERON:NIF_GrossAnatomy_birnlex_4036-FMA_77871 def: "A regional part of brain that is part of a inferior colliculus [Obol]." [OBOL:automatic] synonym: "anatomical structure of brain of caudal colliculus" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of inferior colliculus" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of posterior colliculus" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of posterior corpus quadrigeminum" EXACT [OBOL:automatic] synonym: "biological structure of brain of caudal colliculus" EXACT [OBOL:automatic] synonym: "biological structure of brain of inferior colliculus" EXACT [OBOL:automatic] synonym: "biological structure of brain of posterior colliculus" EXACT [OBOL:automatic] synonym: "biological structure of brain of posterior corpus quadrigeminum" EXACT [OBOL:automatic] synonym: "brain anatomical structure of caudal colliculus" EXACT [OBOL:automatic] synonym: "brain anatomical structure of inferior colliculus" EXACT [OBOL:automatic] synonym: "brain anatomical structure of posterior colliculus" EXACT [OBOL:automatic] synonym: "brain anatomical structure of posterior corpus quadrigeminum" EXACT [OBOL:automatic] synonym: "brain biological structure of caudal colliculus" EXACT [OBOL:automatic] synonym: "brain biological structure of inferior colliculus" EXACT [OBOL:automatic] synonym: "brain biological structure of posterior colliculus" EXACT [OBOL:automatic] synonym: "brain biological structure of posterior corpus quadrigeminum" EXACT [OBOL:automatic] synonym: "caudal colliculus anatomical structure of brain" EXACT [OBOL:automatic] synonym: "caudal colliculus biological structure of brain" EXACT [OBOL:automatic] synonym: "caudal colliculus brain anatomical structure" EXACT [OBOL:automatic] synonym: "caudal colliculus brain biological structure" EXACT [OBOL:automatic] synonym: "caudal colliculus neuraxis segment" EXACT [OBOL:automatic] synonym: "caudal colliculus regional part of brain" EXACT [OBOL:automatic] synonym: "caudal colliculus segment of brain" EXACT [OBOL:automatic] synonym: "inferior colliculus anatomical structure of brain" EXACT [OBOL:automatic] synonym: "inferior colliculus biological structure of brain" EXACT [OBOL:automatic] synonym: "inferior colliculus brain anatomical structure" EXACT [OBOL:automatic] synonym: "inferior colliculus brain biological structure" EXACT [OBOL:automatic] synonym: "inferior colliculus neuraxis segment" EXACT [OBOL:automatic] synonym: "inferior colliculus regional part of brain" EXACT [OBOL:automatic] synonym: "inferior colliculus segment" EXACT [FMA:77871] synonym: "inferior colliculus segment of brain" EXACT [OBOL:automatic] synonym: "neuraxis segment of caudal colliculus" EXACT [OBOL:automatic] synonym: "neuraxis segment of inferior colliculus" EXACT [OBOL:automatic] synonym: "neuraxis segment of posterior colliculus" EXACT [OBOL:automatic] synonym: "neuraxis segment of posterior corpus quadrigeminum" EXACT [OBOL:automatic] synonym: "posterior colliculus anatomical structure of brain" EXACT [OBOL:automatic] synonym: "posterior colliculus biological structure of brain" EXACT [OBOL:automatic] synonym: "posterior colliculus brain anatomical structure" EXACT [OBOL:automatic] synonym: "posterior colliculus brain biological structure" EXACT [OBOL:automatic] synonym: "posterior colliculus neuraxis segment" EXACT [OBOL:automatic] synonym: "posterior colliculus regional part of brain" EXACT [OBOL:automatic] synonym: "posterior colliculus segment of brain" EXACT [OBOL:automatic] synonym: "posterior corpus quadrigeminum anatomical structure of brain" EXACT [OBOL:automatic] synonym: "posterior corpus quadrigeminum biological structure of brain" EXACT [OBOL:automatic] synonym: "posterior corpus quadrigeminum brain anatomical structure" EXACT [OBOL:automatic] synonym: "posterior corpus quadrigeminum brain biological structure" EXACT [OBOL:automatic] synonym: "posterior corpus quadrigeminum neuraxis segment" EXACT [OBOL:automatic] synonym: "posterior corpus quadrigeminum regional part of brain" EXACT [OBOL:automatic] synonym: "posterior corpus quadrigeminum segment of brain" EXACT [OBOL:automatic] synonym: "regional part of brain of caudal colliculus" EXACT [OBOL:automatic] synonym: "regional part of brain of inferior colliculus" EXACT [OBOL:automatic] synonym: "regional part of brain of posterior colliculus" EXACT [OBOL:automatic] synonym: "regional part of brain of posterior corpus quadrigeminum" EXACT [OBOL:automatic] synonym: "segment of brain of caudal colliculus" EXACT [OBOL:automatic] synonym: "segment of brain of inferior colliculus" EXACT [OBOL:automatic] synonym: "segment of brain of posterior colliculus" EXACT [OBOL:automatic] synonym: "segment of brain of posterior corpus quadrigeminum" EXACT [OBOL:automatic] synonym: "segment of inferior colliculus" EXACT [NIF_GrossAnatomy:birnlex_4036] xref: FMA:77871 xref: NIF_GrossAnatomy:birnlex_4036 is_a: UBERON:0002966 ! regional part of midbrain tectum relationship: part_of UBERON:0001946 intersection_of: UBERON:0002616 ! regional part of brain intersection_of: part_of UBERON:0001946 ! inferior colliculus [Term] id: UBERON:0002918 name: medial parabrachial nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_4038-FMA_72480 def: "The Medial parabrachial nucleus is a nucleus of the pons which constitutes part of the pneumotaxic center. It gets its name from its location relative to the superior cerebellar peduncles, which is also known as the 'brachia conjunctiva'. [WP,unvetted]." [Wikipedia:Medial_parabrachial_nucleus] subset: uberon_slim xref: FMA:72480 xref: NIF_GrossAnatomy:birnlex_4038 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002919 name: anterior parolfactory sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_4039-FMA_83744 synonym: "paraolfactory sulci" EXACT PLURAL [NIF_GrossAnatomy:birnlex_4039] synonym: "paraolfactory sulcus" EXACT [FMA:83744] synonym: "sulcus parolfactorius anterior" EXACT [NIF_GrossAnatomy:birnlex_4039] xref: FMA:83744 xref: NIF_GrossAnatomy:birnlex_4039 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002920 name: callosal sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_4040-FMA_83743 def: "The callosal sulcus is a sulcus in the brain between the cingulate gyrus and corpus callosum, below the longitudinal cerebral fissure. [WP,unvetted]." [Wikipedia:Callosal_sulcus] subset: uberon_slim synonym: "sulcus corporis callosi" EXACT [NIF_GrossAnatomy:birnlex_4040] synonym: "sulcus of corpus callosum" EXACT [FMA:83743] xref: FMA:83743 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/43/Gray727_sulcus_of_the_corpus_callosum.svg/200px-Gray727_sulcus_of_the_corpus_callosum.svg.png xref: NIF_GrossAnatomy:birnlex_4040 xref: SCTID:279349000 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002921 name: longitudinal fissure alt_id: UBERON:NIF_GrossAnatomy_birnlex_4041-FMA_83727 def: "The great longitudinal fissure (or longitudinal cerebral fissure, or longitudinal fissure, or interhemispheric fissure) is the deep groove which separates the two hemispheres of the vertebrate brain. The falx cerebri, a dural brain covering, lies within the medial longitudinal fissure. [WP,unvetted]." [Wikipedia:Longitudinal_fissure] subset: uberon_slim synonym: "fissura interhemispherica" EXACT [NIF_GrossAnatomy:birnlex_4041] synonym: "fissura longitudinalis cerebrales" EXACT [NIF_GrossAnatomy:birnlex_4041] synonym: "fissura longitudinalis cerebri" EXACT [NIF_GrossAnatomy:birnlex_4041] synonym: "fissura longitudinalis magna" EXACT [NIF_GrossAnatomy:birnlex_4041] synonym: "hemispheric sulcus" EXACT [FMA:83727] synonym: "interhemispheric fissure" EXACT [FMA:83727] synonym: "longitudinal cerebral fissure" EXACT [FMA:83727] synonym: "longitudinal fissure of hemisphere" EXACT [NIF_GrossAnatomy:birnlex_4041] synonym: "longitudinal fissure of the cerebrum" EXACT [NIF_GrossAnatomy:birnlex_4041] synonym: "longitudinal sulcus" EXACT [FMA:83727] synonym: "medial longitudinal fissure" EXACT [FMA:83727] synonym: "sagittal fissure" EXACT [FMA:83727] xref: FMA:83727 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/92/Hemispheres.png/200px-Hemispheres.png xref: ncithesaurus:Longitudinal_Fissure xref: NIF_GrossAnatomy:birnlex_4041 xref: OpenCyc:Mx4rwJlWu5wpEbGdrcN5Y29ycA xref: SCTID:369225004 is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0002922 name: olfactory trigone alt_id: UBERON:NIF_GrossAnatomy_birnlex_4042-FMA_74883 def: "The olfactory trigone is a small triangular area in front of the anterior perforated substance. Its apex, directed forward, occupies the posterior part of the olfactory sulcus, and is brought into view by throwing back the olfactory tract. [WP,unvetted]." [Wikipedia:Olfactory_trigone] subset: uberon_slim synonym: "trigonum olfactorium" EXACT [NIF_GrossAnatomy:birnlex_4042] xref: FMA:74883 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4d/Gray732.png/200px-Gray732.png xref: ncithesaurus:Trigonum_Olfactorium xref: NIF_GrossAnatomy:birnlex_4042 xref: SCTID:369102007 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0002923 name: posterior parolfactory sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_4043-FMA_83745 xref: FMA:83745 xref: NIF_GrossAnatomy:birnlex_4043 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002924 name: terminal nerve alt_id: UBERON:NIF_GrossAnatomy_birnlex_4044-ZFA_0001356 def: "The terminal nerve, located anterior to cranial nerve I, is comprised of a group of cells with somata adjacent to the olfactory bulb and processes that extend anteriorly to the olfactory epithelium and posteriorly to the telencephalon. In teleost fish an additional group of axons extends along the optic tract and delivers putative neuromodulators to the retina. It is thought to develop from cranial neural crest." [PMID:15821344, Wikipedia:Terminal_nerve, ZFIN:ZDB-PUB-041202-1] comment: PMID:2286018 state: 'The presence of an additional cranial nerve (the nervus terminalis or cranial nerve zero) is well documented in many non-human vertebrate species. However, its existence in the adult human has been disputed. The present study focused on the structure and incidence of this nerve in the adult human brain. The nerve was examined post-mortem in 10 adult brains using dissection microscopy, light microscopy, transmission electron microscopy, and immunohistochemistry. In all specimens, the nervus terminalis was identified bilaterally as a microscopic plexus of unmyelinated peripheral nerve fascicles in the subarachnoid space covering the gyrus rectus of the orbital surface of the frontal lobes. The plexus appeared in the region of the cribriform plate of the ethmoid and coursed posteriorly to the vicinity of the olfactory trigone, medial olfactory gyrus, and lamina terminalis. We conclude that the terminal nerve is a common finding in the adult human brain, confirming early light microscopic reports.' subset: uberon_slim synonym: "cranial nerve 0" EXACT [Wikipedia:Terminal_nerve] synonym: "cranial nerve zero" EXACT [Wikipedia:Terminal_nerve] synonym: "nervus terminalis" EXACT [ZFA:0001356] xref: EFO:0003678 xref: NIF_GrossAnatomy:birnlex_4044 xref: ZFA:0001356 is_a: UBERON:0001785 {source="ZFA"} ! cranial nerve [Term] id: UBERON:0002925 name: trigeminal nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_4096-FMA_71248 comment: note massive inconsistencies between GO, MA, wikipedia. Part of pons in MA, but this leads to inconsistencies with ABA. See https://sourceforge.net/tracker/?func=detail&aid=3291162&group_id=76834&atid=1205376 subset: uberon_slim synonym: "nucleus mesencephalicus nervi trigemini" RELATED [BTO:0001074] synonym: "nucleus mesencephalicus trigeminalis" RELATED [BTO:0001074] synonym: "nucleus tractus mesencephali nervi trigeminalis" RELATED [BTO:0001074] synonym: "trigeminal nuclear complex nucleus" EXACT [FMA:71247] synonym: "trigeminal nucleus" EXACT [FMA:71248] synonym: "trigeminal V nucleus" EXACT [MA:0001028] xref: BM:V xref: BTO:0001074 xref: EV:0100271 xref: FMA:71247 xref: GAID:604 xref: MA:0001028 xref: MESH:A.08.186.211.132.931 xref: ncithesaurus:Trigeminal_Nucleus xref: NIF_GrossAnatomy:nifext_11 xref: OG:0001353 xref: SCTID:280164007 is_a: UBERON:0002308 {source="FMA"} ! nucleus of brain relationship: part_of UBERON:0007641 intersection_of: UBERON:0002308 ! nucleus of brain intersection_of: part_of UBERON:0007641 ! trigeminal nuclear complex [Term] id: UBERON:0002926 name: gustatory epithelium alt_id: UBERON:NIF_GrossAnatomy_birnlex_4099-FMA_62412 comment: editor note - see also epithelium of tongue and subclasses xref: FMA:62412 xref: NIF_GrossAnatomy:birnlex_4099 is_a: UBERON:0003357 ! implied link automatically realized ! epithelium of tongue is_a: UBERON:0006934 {source="FMA"} ! sensory epithelium relationship: part_of UBERON:0001033 ! gustatory system relationship: part_of UBERON:0001723 ! tongue [Term] id: UBERON:0002928 name: dentate gyrus polymorphic layer alt_id: UBERON:NIF_GrossAnatomy_birnlex_4128-MA_0002864 xref: MA:0002864 xref: NIF_GrossAnatomy:birnlex_4128 is_a: UBERON:0000200 ! gyrus is_a: UBERON:0002304 ! layer of dentate gyrus [Term] id: UBERON:0002929 name: dentate gyrus pyramidal layer alt_id: UBERON:NIF_GrossAnatomy_birnlex_4129-MA_0000948 xref: MA:0000948 is_a: UBERON:0002304 ! layer of dentate gyrus [Term] id: UBERON:0002930 name: tectopontine tract alt_id: UBERON:NIF_GrossAnatomy_birnlex_701-FMA_72505 synonym: "fibrae tectopontinae" EXACT [FMA:72505, FMA:TA] synonym: "tectopontine fibers" EXACT [FMA:72505] synonym: "tectopontine fibres" EXACT [FMA:72505] xref: FMA:72505 xref: NIF_GrossAnatomy:birnlex_701 xref: SCTID:3301002 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0002931 name: dorsal septal nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_704-FMA_61877 xref: FMA:61877 xref: NIF_GrossAnatomy:birnlex_704 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002932 name: trapezoid body alt_id: UBERON:NIF_GrossAnatomy_birnlex_707-FMA_72487 def: "The trapezoid body is part of the acoustic pathway. It is a bundle of fibers and cells in the pontine tegmentum. It consists of fibers arising from the ventral cochlear nucleus. A collection of nerve cells inside forms a trapezoid nucleus. The superior olivary nucleus is situated on the dorsal surface of the trapezoid body. Most nerve fibers pass directly from the superior olivary nuclei to the inferior colliculus. Axons leaving the ventral cochlear nucleus (VCN) form a broad pathway that crosses under the brain stem in the trapezoid body. A thin pathway, the intermediate acoustic stria, also leaves the VCN, merging with the trapezoid body close to the superior olivary complex, where many of its axons synapse. Axons leaving the dorsal cochlear nucleus (DCN) form the dorsal acoustic stria, which reaches primarily the contralateral dorsal nucleus of the lateral lemniscus and the central nucleus of the inferior colliculus. [WP,unvetted]." [Wikipedia:Trapezoid_body] subset: uberon_slim xref: BM:TB xref: FMA:72487 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bb/Gray760.png/200px-Gray760.png xref: NIF_GrossAnatomy:birnlex_707 xref: SCTID:369019006 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0002933 name: nucleus of anterior commissure alt_id: UBERON:NIF_GrossAnatomy_birnlex_712-FMA_61883 synonym: "anterior commissure nucleus" EXACT [FMA:61883] synonym: "bed nucleus of anterior commissure" EXACT [FMA:61883] synonym: "nucleus of commissura anterior" EXACT [FMA:61883] xref: ABA:BAC xref: BM:Tel-ACN xref: FMA:61883 xref: NIF_GrossAnatomy:birnlex_712 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002934 name: ventral oculomotor nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_713-FMA_72422 synonym: "ventral oculomotor cell column" EXACT [FMA:72422] xref: FMA:72422 xref: NIF_GrossAnatomy:birnlex_713 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter [Term] id: UBERON:0002935 name: magnocellular part of ventral anterior nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_716-FMA_62192 synonym: "magnocellular division of ventral anterior nucleus of thalamus" EXACT [FMA:62192] synonym: "magnocellular ventral anterior nucleus" EXACT [NIF_GrossAnatomy:birnlex_716] synonym: "nucleus lateropolaris (magnocellularis)" EXACT [NIF_GrossAnatomy:birnlex_716] synonym: "nucleus lateropolaris magnocellularis (hassler)" EXACT [NIF_GrossAnatomy:birnlex_716] synonym: "nucleus rostralis lateralis situs perifascicularis" EXACT [NIF_GrossAnatomy:birnlex_716] synonym: "nucleus thalamicus ventral anterior, pars magnocellularis" EXACT [NIF_GrossAnatomy:birnlex_716] synonym: "nucleus ventralis anterior, pars magnocellularis" EXACT [NIF_GrossAnatomy:birnlex_716] synonym: "pars magnocellularis nuclei ventralis anterior thalami" EXACT [FMA:62192, FMA:TA] synonym: "ventral anterior nucleus, magnocellular part" EXACT [FMA:62192] synonym: "ventral anterior nucleus, pars magnocellularis" EXACT [FMA:62192] synonym: "ventral anterior thalamic nucleus, magnocellular part" EXACT [FMA:62192] synonym: "ventroanterior thalamic nucleus, magnocellular part" EXACT [NIF_GrossAnatomy:birnlex_716] xref: BM:Die-Th-VA-VAmc xref: FMA:62192 xref: NIF_GrossAnatomy:birnlex_716 is_a: UBERON:0002020 ! gray matter of neuraxis [Term] id: UBERON:0002936 name: magnocellular part of red nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_720-FMA_72431 synonym: "paleoruber" EXACT [FMA:72431] synonym: "red nucleus, magnocellular part" EXACT [FMA:72431] xref: FMA:72431 xref: NIF_GrossAnatomy:birnlex_720 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001947 ! red nucleus [Term] id: UBERON:0002937 name: parvicellular part of ventral anterior nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_722-FMA_62191 synonym: "nucleus ventralis anterior (dewulf)" EXACT [NIF_GrossAnatomy:birnlex_722] synonym: "nucleus ventralis anterior, pars parvicellularis" EXACT [NIF_GrossAnatomy:birnlex_722] synonym: "ventral anterior nucleus, pars parvicellularis" EXACT [FMA:62191] synonym: "ventral anterior thalamic nucleus, parvicellular part" EXACT [FMA:62191] synonym: "ventralis anterior (jones)" EXACT [] xref: FMA:62191 xref: NIF_GrossAnatomy:birnlex_722 is_a: UBERON:0002020 ! gray matter of neuraxis [Term] id: UBERON:0002938 name: parvocellular part of red nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_725-FMA_72430 synonym: "neoruber" EXACT [FMA:72430] synonym: "red nucleus, parvocellular part" EXACT [FMA:72430] xref: FMA:72430 xref: NIF_GrossAnatomy:birnlex_725 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001947 ! red nucleus [Term] id: UBERON:0002939 name: ventral posteroinferior nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_728-FMA_62199 synonym: "nucleus ventralis posterior inferior thalami" EXACT [FMA:62199, FMA:TA] synonym: "ventral posterior inferior nucleus" EXACT [FMA:62199] synonym: "ventral posterior inferior nucleus of thalamus" EXACT [FMA:62199] synonym: "ventral posterior inferior thalamic nucleus" EXACT [FMA:62199] xref: BM:Die-Th-VPI xref: BTO:0002464 xref: BTO:0004373 xref: BTO:0004374 xref: EV:0100209 xref: FMA:62199 xref: NIF_GrossAnatomy:birnlex_728 xref: SCTID:369173003 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter [Term] id: UBERON:0002940 name: anterior column of fornix alt_id: UBERON:NIF_GrossAnatomy_birnlex_731-FMA_61966 synonym: "anterior crus of fornix" EXACT [FMA:61966] synonym: "anterior pillar of fornix" EXACT [FMA:61966] xref: FMA:61966 xref: NIF_GrossAnatomy:birnlex_731 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0002941 name: capsule of red nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_732-FMA_72450 synonym: "red nuclear capsule" EXACT [FMA:72450] xref: FMA:72450 xref: NIF_GrossAnatomy:birnlex_732 xref: SCTID:369245007 is_a: UBERON:0002316 ! white matter is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter relationship: part_of UBERON:0001947 ! red nucleus [Term] id: UBERON:0002942 name: ventral posterolateral nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_737-FMA_62200 def: "The ventral posterolateral nucleus (VPL) is a nucleus of the thalamus. Together with the ventral posteromedial nucleus (VPM) it constitutes the ventral posterior nucleus. [WP,unvetted]." [Wikipedia:Ventral_posterolateral_nucleus] subset: uberon_slim synonym: "nucleus ventralis posterior lateralis thalami" EXACT [NIF_GrossAnatomy:birnlex_737] synonym: "nucleus ventralis posterolateralis" EXACT [NIF_GrossAnatomy:birnlex_737] synonym: "nucleus ventralis posterolateralis thalami" EXACT [NIF_GrossAnatomy:birnlex_737] synonym: "nucleus ventralis thalami posterior lateralis" EXACT [NIF_GrossAnatomy:birnlex_737] synonym: "posterolateral ventral nucleus of thalamus" EXACT [FMA:62200] synonym: "posterolateral ventral nucleus of the thalamus" EXACT [NIF_GrossAnatomy:birnlex_737] synonym: "ventral posterolateral nucleus of thalamus" EXACT [FMA:62200] synonym: "ventral posterolateral nucleus of the thalamus" EXACT [NIF_GrossAnatomy:birnlex_737] synonym: "ventral posterolateral thalamic nucleus" EXACT [FMA:62200] xref: ABA:VPL xref: FMA:62200 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/ThalamicNuclei.png/200px-ThalamicNuclei.png xref: NIF_GrossAnatomy:birnlex_737 xref: SCTID:369171001 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: spatially_disjoint_from UBERON:0002945 {source="ABA"} ! ventral posteromedial nucleus [Term] id: UBERON:0002943 name: lingual gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_740-FMA_61904 def: "The lingual gyrus of the occipital lobe lies between the calcarine sulcus and the posterior part of the collateral sulcus; behind, it reaches the occipital pole; in front, it is continued on to the tentorial surface of the temporal lobe, and joins the hippocampal gyrus. The lingual gyrus is so-named because it resembles the tongue in shape. This region is believed to play an important role in dreaming and vision, especially in recognizing words, regardless of size, font, etc. Shunt [WP,unvetted]." [Wikipedia:Lingual_gyrus] subset: uberon_slim synonym: "gyrus occipitotemporalis medialis" EXACT [FMA:61904, FMA:TA] synonym: "lingula of cerebral hemisphere" EXACT [FMA:61904] synonym: "medial occipitotemporal gyrus" EXACT [FMA:61904] synonym: "medial occipitotemporal gyrus-2" EXACT [FMA:61904] xref: FMA:61904 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a1/Gray727_lingual_gyrus.png/200px-Gray727_lingual_gyrus.png xref: NIF_GrossAnatomy:birnlex_740 xref: SCTID:279203007 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0002021 ! occipital lobe [Term] id: UBERON:0002944 name: spinothalamic tract of medulla alt_id: UBERON:NIF_GrossAnatomy_birnlex_741-FMA_72644 def: "Part of spinothalamic tract that is in the medulla" [NIF_GrossAnatomy:birnlex_741] subset: uberon_slim synonym: "spinothalamic tract" BROAD [FMA:72644, NIF_GrossAnatomy:birnlex_741] xref: FMA:72644 xref: GAID:703 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Medulla_spinalis_-_tracts_-_English.svg/200px-Medulla_spinalis_-_tracts_-_English.svg.png xref: MESH:A.08.186.854.761 xref: NIF_GrossAnatomy:birnlex_741 xref: SCTID:360570003 is_a: UBERON:0007702 {source="FMA"} ! tract of brain relationship: part_of UBERON:0001896 {source="FMA"} ! medulla oblongata relationship: part_of UBERON:0007703 ! spinothalamic tract [Term] id: UBERON:0002945 name: ventral posteromedial nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_743-FMA_62202 def: "The ventral posteromedial nucleus is a nucleus of the thalamus. [WP,unvetted]." [Wikipedia:Ventral_posteromedial_nucleus] subset: uberon_slim synonym: "arcuate nucleus of thalamus" EXACT [FMA:62202] synonym: "arcuate nucleus of the thalamus" EXACT [NIF_GrossAnatomy:birnlex_743] synonym: "arcuate nucleus-3" EXACT [FMA:62202] synonym: "nucleus arcuatus thalami" EXACT [NIF_GrossAnatomy:birnlex_743] synonym: "nucleus semilunaris thalami" EXACT [NIF_GrossAnatomy:birnlex_743] synonym: "nucleus ventralis posterior medialis thalami" EXACT [NIF_GrossAnatomy:birnlex_743] synonym: "nucleus ventralis posteromedialis" EXACT [NIF_GrossAnatomy:birnlex_743] synonym: "nucleus ventralis posteromedialis thalami" EXACT [NIF_GrossAnatomy:birnlex_743] synonym: "nucleus ventrocaudalis anterior internus (hassler)" EXACT [NIF_GrossAnatomy:birnlex_743] synonym: "posteromedial ventral nucleus of thalamus" EXACT [FMA:62202] synonym: "posteromedial ventral nucleus of the thalamus" EXACT [NIF_GrossAnatomy:birnlex_743] synonym: "semilunar nucleus" EXACT [FMA:62202] synonym: "thalamic gustatory nucleus" EXACT [FMA:62202] synonym: "ventral posterior medial nucleus" EXACT [FMA:62202] synonym: "ventral posterior medial nucleus of thalamus" EXACT [NIF_GrossAnatomy:birnlex_743] synonym: "ventral posteromedial nucleus of thalamus" EXACT [FMA:62202] synonym: "ventral posteromedial nucleus of the thalamus" EXACT [NIF_GrossAnatomy:birnlex_743] synonym: "ventral posteromedial thalamic nucleus" EXACT [NIF_GrossAnatomy:birnlex_743] synonym: "ventroposteromedial nucleus of the thalamus" EXACT [NIF_GrossAnatomy:birnlex_743] xref: ABA:VPM xref: BM:Die-Th-VPM xref: FMA:62202 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/ThalamicNuclei.png/200px-ThalamicNuclei.png xref: NIF_GrossAnatomy:birnlex_743 xref: SCTID:369172008 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter is_a: UBERON:0007692 {source="FMA"} ! nucleus of thalamus relationship: part_of UBERON:0002596 {source="FMA"} ! ventral posterior nucleus relationship: spatially_disjoint_from UBERON:0002942 {source="ABA"} ! ventral posterolateral nucleus [Term] id: UBERON:0002946 name: regional part of cerebellum alt_id: UBERON:NIF_GrossAnatomy_birnlex_748-FMA_256150 def: "A regional part of brain that is part of a cerebellum [Obol]." [OBOL:automatic] synonym: "anatomical structure of brain of cerebellum" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of epencephalon-1" EXACT [OBOL:automatic] synonym: "biological structure of brain of cerebellum" EXACT [OBOL:automatic] synonym: "biological structure of brain of epencephalon-1" EXACT [OBOL:automatic] synonym: "brain anatomical structure of cerebellum" EXACT [OBOL:automatic] synonym: "brain anatomical structure of epencephalon-1" EXACT [OBOL:automatic] synonym: "brain biological structure of cerebellum" EXACT [OBOL:automatic] synonym: "brain biological structure of epencephalon-1" EXACT [OBOL:automatic] synonym: "cerebellum anatomical structure of brain" EXACT [OBOL:automatic] synonym: "cerebellum biological structure of brain" EXACT [OBOL:automatic] synonym: "cerebellum brain anatomical structure" EXACT [OBOL:automatic] synonym: "cerebellum brain biological structure" EXACT [OBOL:automatic] synonym: "cerebellum neuraxis segment" EXACT [OBOL:automatic] synonym: "cerebellum regional part of brain" EXACT [OBOL:automatic] synonym: "cerebellum segment of brain" EXACT [OBOL:automatic] synonym: "epencephalon-1 anatomical structure of brain" EXACT [OBOL:automatic] synonym: "epencephalon-1 biological structure of brain" EXACT [OBOL:automatic] synonym: "epencephalon-1 brain anatomical structure" EXACT [OBOL:automatic] synonym: "epencephalon-1 brain biological structure" EXACT [OBOL:automatic] synonym: "epencephalon-1 neuraxis segment" EXACT [OBOL:automatic] synonym: "epencephalon-1 regional part of brain" EXACT [OBOL:automatic] synonym: "epencephalon-1 segment of brain" EXACT [OBOL:automatic] synonym: "neuraxis segment of cerebellum" EXACT [OBOL:automatic] synonym: "neuraxis segment of epencephalon-1" EXACT [OBOL:automatic] synonym: "regional part of brain of cerebellum" EXACT [OBOL:automatic] synonym: "regional part of brain of epencephalon-1" EXACT [OBOL:automatic] synonym: "segment of brain of cerebellum" EXACT [OBOL:automatic] synonym: "segment of brain of epencephalon-1" EXACT [OBOL:automatic] synonym: "segment of cerebellum" EXACT [NIF_GrossAnatomy:birnlex_748] xref: FMA:256150 xref: NIF_GrossAnatomy:birnlex_748 is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon relationship: part_of UBERON:0002037 intersection_of: UBERON:0002616 ! regional part of brain intersection_of: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0002947 name: frontal operculum alt_id: UBERON:NIF_GrossAnatomy_birnlex_751-FMA_74886 xref: FMA:74886 xref: NIF_GrossAnatomy:birnlex_751 xref: SCTID:362352005 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0002948 name: superior occipital gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_758-FMA_61901 synonym: "gyrus occipitalis primus" EXACT [FMA:61901] xref: FMA:61901 xref: NIF_GrossAnatomy:birnlex_758 xref: SCTID:279182006 is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0002021 ! occipital lobe [Term] id: UBERON:0002949 name: tectospinal tract alt_id: UBERON:NIF_GrossAnatomy_birnlex_759-FMA_72620 def: "a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the superior colliculus of the midbrain towards target cells in the ventral spinal cord[GO]." [Wikipedia:Tectospinal_tract] subset: uberon_slim synonym: "held's bundle" EXACT [FMA:72620] synonym: "tectospinal pathway" EXACT [FMA:72620] xref: BM:TSp xref: FMA:72620 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/be/Gray670.png/200px-Gray670.png xref: NIF_GrossAnatomy:birnlex_759 is_a: UBERON:0002316 ! white matter is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002950 name: regional part of midbrain alt_id: UBERON:NIF_GrossAnatomy_birnlex_763-FMA_61997 def: "A regional part of brain that is part of a midbrain [Obol]." [OBOL:automatic] synonym: "anatomical structure of brain of midbrain" EXACT [OBOL:automatic] synonym: "biological structure of brain of midbrain" EXACT [OBOL:automatic] synonym: "brain anatomical structure of midbrain" EXACT [OBOL:automatic] synonym: "brain biological structure of midbrain" EXACT [OBOL:automatic] synonym: "midbrain anatomical structure of brain" EXACT [OBOL:automatic] synonym: "midbrain biological structure of brain" EXACT [OBOL:automatic] synonym: "midbrain brain anatomical structure" EXACT [OBOL:automatic] synonym: "midbrain brain biological structure" EXACT [OBOL:automatic] synonym: "midbrain neuraxis segment" EXACT [OBOL:automatic] synonym: "midbrain regional part of brain" EXACT [OBOL:automatic] synonym: "midbrain segment" EXACT [FMA:61997] synonym: "midbrain segment of brain" EXACT [OBOL:automatic] synonym: "neuraxis segment of midbrain" EXACT [OBOL:automatic] synonym: "regional part of brain of midbrain" EXACT [OBOL:automatic] synonym: "segment of brain of midbrain" EXACT [OBOL:automatic] synonym: "segment of midbrain" EXACT [NIF_GrossAnatomy:birnlex_763] xref: FMA:61997 xref: NIF_GrossAnatomy:birnlex_763 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001891 intersection_of: UBERON:0002616 ! regional part of brain intersection_of: part_of UBERON:0001891 ! midbrain [Term] id: UBERON:0002951 name: regional part of intermediate hypothalamic region alt_id: UBERON:NIF_GrossAnatomy_birnlex_767-FMA_62310 def: "A regional part of brain that is part of a intermediate hypothalamic region [Obol]." [OBOL:automatic] synonym: "anatomical structure of brain of intermediate hypothalamic area" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of intermediate hypothalamic region" EXACT [OBOL:automatic] synonym: "biological structure of brain of intermediate hypothalamic area" EXACT [OBOL:automatic] synonym: "biological structure of brain of intermediate hypothalamic region" EXACT [OBOL:automatic] synonym: "brain anatomical structure of intermediate hypothalamic area" EXACT [OBOL:automatic] synonym: "brain anatomical structure of intermediate hypothalamic region" EXACT [OBOL:automatic] synonym: "brain biological structure of intermediate hypothalamic area" EXACT [OBOL:automatic] synonym: "brain biological structure of intermediate hypothalamic region" EXACT [OBOL:automatic] synonym: "intermediate hypothalamic area anatomical structure of brain" EXACT [OBOL:automatic] synonym: "intermediate hypothalamic area biological structure of brain" EXACT [OBOL:automatic] synonym: "intermediate hypothalamic area brain anatomical structure" EXACT [OBOL:automatic] synonym: "intermediate hypothalamic area brain biological structure" EXACT [OBOL:automatic] synonym: "intermediate hypothalamic area neuraxis segment" EXACT [OBOL:automatic] synonym: "intermediate hypothalamic area regional part of brain" EXACT [OBOL:automatic] synonym: "intermediate hypothalamic area segment of brain" EXACT [OBOL:automatic] synonym: "intermediate hypothalamic region anatomical structure of brain" EXACT [OBOL:automatic] synonym: "intermediate hypothalamic region biological structure of brain" EXACT [OBOL:automatic] synonym: "intermediate hypothalamic region brain anatomical structure" EXACT [OBOL:automatic] synonym: "intermediate hypothalamic region brain biological structure" EXACT [OBOL:automatic] synonym: "intermediate hypothalamic region neuraxis segment" EXACT [OBOL:automatic] synonym: "intermediate hypothalamic region regional part of brain" EXACT [OBOL:automatic] synonym: "intermediate hypothalamic region segment" EXACT [FMA:62310] synonym: "intermediate hypothalamic region segment of brain" EXACT [OBOL:automatic] synonym: "neuraxis segment of intermediate hypothalamic area" EXACT [OBOL:automatic] synonym: "neuraxis segment of intermediate hypothalamic region" EXACT [OBOL:automatic] synonym: "regional part of brain of intermediate hypothalamic area" EXACT [OBOL:automatic] synonym: "regional part of brain of intermediate hypothalamic region" EXACT [OBOL:automatic] synonym: "segment of brain of intermediate hypothalamic area" EXACT [OBOL:automatic] synonym: "segment of brain of intermediate hypothalamic region" EXACT [OBOL:automatic] synonym: "segment of intermediate hypothalamic region" EXACT [NIF_GrossAnatomy:birnlex_767] xref: FMA:62310 xref: NIF_GrossAnatomy:birnlex_767 is_a: UBERON:0003048 ! regional part of hypothalamus relationship: part_of UBERON:0002555 intersection_of: UBERON:0002616 ! regional part of brain intersection_of: part_of UBERON:0002555 ! intermediate hypothalamic region [Term] id: UBERON:0002952 name: intermediate acoustic stria alt_id: UBERON:NIF_GrossAnatomy_birnlex_768-FMA_72497 synonym: "commissure of held" EXACT [] synonym: "intermediate acoustic stria (held)" EXACT [NIF_GrossAnatomy:birnlex_768] synonym: "intermediate acoustic stria of held" EXACT [] xref: FMA:72497 xref: NIF_GrossAnatomy:birnlex_768 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0002953 name: lateral lemniscus alt_id: UBERON:0003042 alt_id: UBERON:NIF_GrossAnatomy_birnlex_774-FMA_72502 alt_id: UBERON:NIF_GrossAnatomy_birnlex_976-FMA_72502 def: "The lateral lemniscus is a tract of axons in the brainstem that carries information about sound from the cochlear nucleus to various brainstem nuclei and ultimately the contralateral inferior colliculus of the midbrain. Three distinct, primarily inhibitory, cellular groups are located interspersed within these fibers, and are thus named the nuclei of the lateral lemniscus. [WP,unvetted]." [Wikipedia:Lateral_lemniscus] subset: uberon_slim synonym: "lateral fillet" EXACT [FMA:72502] xref: BM:Pons-LL xref: FMA:72502 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/44/Lateral_lemniscus.PNG/200px-Lateral_lemniscus.PNG xref: NIF_GrossAnatomy:birnlex_976 xref: SCTID:362399003 is_a: UBERON:0002316 ! white matter is_a: UBERON:0003001 ! lemniscus is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter [Term] id: UBERON:0002954 name: dorsal hypothalamic area alt_id: UBERON:NIF_GrossAnatomy_birnlex_777-FMA_62339 xref: BM:Die-Hy-HDA xref: FMA:62339 xref: NIF_GrossAnatomy:birnlex_777 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0002955 name: rhomboidal nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_778-FMA_62154 synonym: "nucleus commissuralis rhomboidalis" RELATED [BTO:0002458] synonym: "nucleus rhomboidalis" RELATED [BTO:0002458] synonym: "rhomboid nucleus" EXACT [FMA:62154] synonym: "rhomboid thalamic nucleus" EXACT [FMA:62154] xref: ABA:RH xref: BTO:0002458 xref: FMA:62154 xref: NIF_GrossAnatomy:birnlex_778 is_a: UBERON:0002308 ! nucleus of brain relationship: spatially_disjoint_from UBERON:0001922 {source="ABA"} ! parafascicular nucleus relationship: spatially_disjoint_from UBERON:0001923 {source="ABA"} ! central medial nucleus relationship: spatially_disjoint_from UBERON:0001924 {source="ABA"} ! paracentral nucleus relationship: spatially_disjoint_from UBERON:0003036 {source="ABA"} ! central lateral nucleus [Term] id: UBERON:0002956 name: granular layer of cerebellar cortex alt_id: UBERON:NIF_GrossAnatomy_birnlex_779-FMA_83140 def: "The granular layer is the innermost layer of the cerebellar cortex. This layer contains densely packed small neurons, mostly granule cells. Some Golgi cells are found at the outer border. Granule neurons send parallel fibers to the upper molecular layer, where they synapse with Purkinje cell dendrites. Mossy fibers from the pontine nuclei in the white matter synapse with granule cell axons, Golgi cell axons and unipolar brush interneuron axons at cerebellar glomeruli in the granule cell layer." [GO:0021681] synonym: "cerebellar granular layer" EXACT [GO:0021681] synonym: "cerebellar granule cell layer" EXACT [] synonym: "cerebellar granule layer" EXACT [] synonym: "cerebellum granule cell layer" EXACT [MA:0000993] synonym: "cerebellum granule layer" EXACT [] synonym: "granule cell layer of cerebellar cortex" EXACT [NIF_GrossAnatomy:birnlex_779] xref: ABA:CBXgr xref: BTO:0004425 xref: FMA:83140 xref: MA:0000993 xref: ncithesaurus:Granular_Layer_of_the_Cerebellum xref: NIF_GrossAnatomy:birnlex_779 is_a: UBERON:0004130 ! cerebellar layer relationship: part_of UBERON:0002129 ! cerebellar cortex relationship: spatially_disjoint_from UBERON:0002979 {source="ABA"} ! Purkinje cell layer of cerebellar cortex [Term] id: UBERON:0002957 name: caudal central oculomotor nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_780-FMA_72426 synonym: "caudal central nucleus" EXACT [FMA:72426] synonym: "caudal central nucleus of oculomotor nerve" EXACT [FMA:72426] xref: FMA:72426 xref: NIF_GrossAnatomy:birnlex_780 xref: SCTID:369239004 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter [Term] id: UBERON:0002958 name: medial lemniscus of pons alt_id: UBERON:NIF_GrossAnatomy_birnlex_781-FMA_72503 def: "A medial lemniscus that is part of a pons [Obol]." [OBOL:automatic] synonym: "medial lemniscus of pons of varolius" EXACT [OBOL:automatic] synonym: "pons medial lemniscus" EXACT [OBOL:automatic] synonym: "pons of varolius medial lemniscus" EXACT [OBOL:automatic] xref: FMA:72503 xref: NIF_GrossAnatomy:birnlex_781 is_a: UBERON:0003002 ! medial lemniscus relationship: part_of UBERON:0000988 intersection_of: UBERON:0003002 ! medial lemniscus intersection_of: part_of UBERON:0000988 ! pons [Term] id: UBERON:0002959 name: subfascicular nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_783-FMA_62155 xref: FMA:62155 xref: NIF_GrossAnatomy:birnlex_783 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002960 name: central oculomotor nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_786-FMA_72425 synonym: "central nucleus of perlia" EXACT [] synonym: "nucleus of perlia" EXACT [] synonym: "spitzka's nucleus" EXACT [FMA:72425] xref: FMA:72425 xref: NIF_GrossAnatomy:birnlex_786 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter [Term] id: UBERON:0002961 name: archicortex alt_id: UBERON:NIF_GrossAnatomy_birnlex_787-FMA_62424 def: "A portion of the cerebral cortex that, with the paleocortex, develops in association with the olfactory system, and which is phylogenetically older than the neocortex and lacks its layered structure. The embryonic archicortex corresponds to the cortex of the dentate gyrus and hippocampus in mature mammals. Being part of the limbic system, it has functions related to emotions and formation of memory. Signals being sent from the limbic lobe to the hippocampal formations can go via the archicortex as an intermediate." [Wikipedia:Archicortex] subset: uberon_slim synonym: "archipallium" EXACT [FMA:62424] xref: FMA:62424 xref: NIF_GrossAnatomy:birnlex_787 xref: SCTID:423918008 is_a: UBERON:0002619 ! regional part of cerebral cortex [Term] id: UBERON:0002962 name: adductor pollicis def: "In human anatomy, the adductor pollicis muscle is a muscle in the hand that functions to adduct the thumb. It has two heads: transverse and oblique. It is a fleshy, flat, triangular, and fan-shaped muscle deep in the thenar compartment beneath the long flexor tendons and the lumbrical muscles at the center of the palm. It overlies the metacarpal bones and the interosseous muscles[WP]." [Wikipedia:Adductor_pollicis_muscle] synonym: "adductor pollicis muscle" EXACT [Wikipedia:Adductor_pollicis_muscle] xref: FMA:37380 xref: SCTID:181649004 is_a: UBERON:0000952 {source="Obol"} ! adductor muscle is_a: UBERON:0001500 ! implied link automatically realized ! muscle of hand relationship: part_of UBERON:0002398 ! hand [Term] id: UBERON:0002963 name: caudal pontine reticular nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_792-FMA_72469 def: "The caudal pontine reticular nucleus is composed of gigantocellular neurons. In rabbits and cats it is exclusively giant cells, however in humans there are normally sized cells as well. The pontis caudalis is rostral to the gigantocellular nucleus and is located in the caudal pons, as the name would indicate. The pontis caudalis has been known to mediate head movement, in concert with the nucleus gigantocellularis and the superior colliculus. The neurons in the dorsal half of this nuclei fire rhythmically during mastication, and in an anesthetized animal it is possible to induce mastication via electrical stimulation of the PC or adjacent areas of the gigantocellular nucleus. The pontis caudalis is also thought to play a role in the grinding of teeth during sleep. [WP,unvetted]." [Wikipedia:Caudal_pontine_reticular_nucleus] subset: uberon_slim synonym: "pontine reticular nucleus, caudal part" EXACT [FMA:72469] xref: ABA:PRNc xref: FMA:72469 xref: NIF_GrossAnatomy:birnlex_792 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter is_a: UBERON:0007413 {source="FMA"} ! nucleus of pontine reticular formation relationship: spatially_disjoint_from UBERON:0002143 {source="ABA"} ! dorsal tegmental nucleus relationship: spatially_disjoint_from UBERON:0002147 {source="ABA"} ! reticulotegmental nucleus relationship: spatially_disjoint_from UBERON:0002149 {source="ABA"} ! superior salivatory nucleus relationship: spatially_disjoint_from UBERON:0002151 {source="ABA"} ! pontine nuclear group relationship: spatially_disjoint_from UBERON:0002633 {source="ABA"} ! motor nucleus of trigeminal nerve relationship: spatially_disjoint_from UBERON:0002682 {source="ABA"} ! abducens nucleus relationship: spatially_disjoint_from UBERON:0002968 {source="ABA"} ! central gray substance of pons relationship: spatially_disjoint_from UBERON:0003011 {source="ABA"} ! facial motor nucleus relationship: spatially_disjoint_from UBERON:0007632 {source="ABA"} ! barrington's nucleus [Term] id: UBERON:0002964 name: dorsal oculomotor nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_793-FMA_62442 synonym: "dorsal oculomotor cell column" EXACT [FMA:62442] xref: FMA:62442 xref: NIF_GrossAnatomy:birnlex_793 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter [Term] id: UBERON:0002965 name: rostral intralaminar nuclei alt_id: UBERON:NIF_GrossAnatomy_birnlex_794-FMA_62164 synonym: "nuclei intralaminares rostrales" EXACT [NIF_GrossAnatomy:birnlex_794] synonym: "rostral intralaminar nuclear group" EXACT [FMA:62164] synonym: "rostral intralaminar nuclei" EXACT [FMA:62164] xref: FMA:62164 xref: NIF_GrossAnatomy:birnlex_794 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter [Term] id: UBERON:0002966 name: regional part of midbrain tectum alt_id: UBERON:NIF_GrossAnatomy_birnlex_795-FMA_62398 def: "A regional part of brain that is part of a midbrain tectum [Obol]." [OBOL:automatic] synonym: "anatomical structure of brain of midbrain tectum" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of neuraxis tectum" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of tectum" EXACT [OBOL:automatic] synonym: "biological structure of brain of midbrain tectum" EXACT [OBOL:automatic] synonym: "biological structure of brain of neuraxis tectum" EXACT [OBOL:automatic] synonym: "biological structure of brain of tectum" EXACT [OBOL:automatic] synonym: "brain anatomical structure of midbrain tectum" EXACT [OBOL:automatic] synonym: "brain anatomical structure of neuraxis tectum" EXACT [OBOL:automatic] synonym: "brain anatomical structure of tectum" EXACT [OBOL:automatic] synonym: "brain biological structure of midbrain tectum" EXACT [OBOL:automatic] synonym: "brain biological structure of neuraxis tectum" EXACT [OBOL:automatic] synonym: "brain biological structure of tectum" EXACT [OBOL:automatic] synonym: "midbrain tectum anatomical structure of brain" EXACT [OBOL:automatic] synonym: "midbrain tectum biological structure of brain" EXACT [OBOL:automatic] synonym: "midbrain tectum brain anatomical structure" EXACT [OBOL:automatic] synonym: "midbrain tectum brain biological structure" EXACT [OBOL:automatic] synonym: "midbrain tectum neuraxis segment" EXACT [OBOL:automatic] synonym: "midbrain tectum regional part of brain" EXACT [OBOL:automatic] synonym: "midbrain tectum segment" EXACT [FMA:62398] synonym: "midbrain tectum segment of brain" EXACT [OBOL:automatic] synonym: "neuraxis segment of midbrain tectum" EXACT [OBOL:automatic] synonym: "neuraxis segment of neuraxis tectum" EXACT [OBOL:automatic] synonym: "neuraxis segment of tectum" EXACT [OBOL:automatic] synonym: "neuraxis tectum anatomical structure of brain" EXACT [OBOL:automatic] synonym: "neuraxis tectum biological structure of brain" EXACT [OBOL:automatic] synonym: "neuraxis tectum brain anatomical structure" EXACT [OBOL:automatic] synonym: "neuraxis tectum brain biological structure" EXACT [OBOL:automatic] synonym: "neuraxis tectum neuraxis segment" EXACT [OBOL:automatic] synonym: "neuraxis tectum regional part of brain" EXACT [OBOL:automatic] synonym: "neuraxis tectum segment of brain" EXACT [OBOL:automatic] synonym: "regional part of brain of midbrain tectum" EXACT [OBOL:automatic] synonym: "regional part of brain of neuraxis tectum" EXACT [OBOL:automatic] synonym: "regional part of brain of tectum" EXACT [OBOL:automatic] synonym: "segment of brain of midbrain tectum" EXACT [OBOL:automatic] synonym: "segment of brain of neuraxis tectum" EXACT [OBOL:automatic] synonym: "segment of brain of tectum" EXACT [OBOL:automatic] synonym: "segment of midbrain tectum" EXACT [NIF_GrossAnatomy:birnlex_795] synonym: "tectum anatomical structure of brain" EXACT [OBOL:automatic] synonym: "tectum biological structure of brain" EXACT [OBOL:automatic] synonym: "tectum brain anatomical structure" EXACT [OBOL:automatic] synonym: "tectum brain biological structure" EXACT [OBOL:automatic] synonym: "tectum neuraxis segment" EXACT [OBOL:automatic] synonym: "tectum regional part of brain" EXACT [OBOL:automatic] synonym: "tectum segment of brain" EXACT [OBOL:automatic] xref: FMA:62398 xref: NIF_GrossAnatomy:birnlex_795 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002314 intersection_of: UBERON:0002616 ! regional part of brain intersection_of: part_of UBERON:0002314 ! midbrain tectum [Term] id: UBERON:0002967 name: cingulate gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_798-FMA_62434 def: "A gyrus in the medial part of the brain. It partially wraps around the corpus callosum and is limited above by the cingulate sulcus. The cortical part of the cingulate gyrus is referred to as cingulate cortex.[Wikipedia]. The cingulate gyrus receives inputs from the anterior nucleus of the thalamus and the neocortex, as well as from somatosensory areas of the cerebral cortex. It projects to the entorhinal cortex via the cingulum. It functions as an integral part of the limbic system, which is involved with emotion formation and processing, learning, and memory. Also, executive control needed to suppress inappropriate unconscious priming is known to involve the anterior cingulate gyrus. It is also involved in respiratory control." [Wikipedia:Cingulate_gyrus] subset: uberon_slim synonym: "cingulate area" EXACT [FMA:62434] synonym: "cingulate region" EXACT [FMA:62434] synonym: "falciform lobe" EXACT [FMA:62434] synonym: "upper limbic gyrus" EXACT [FMA:62434] xref: BM:Tel-CG xref: BTO:0003976 xref: FMA:62434 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/dc/Gray727_cingulate_gyrus.png/200px-Gray727_cingulate_gyrus.png xref: NIF_GrossAnatomy:birnlex_798 xref: SCTID:279208003 is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0000349 ! limbic system [Term] id: UBERON:0002968 name: central gray substance of pons alt_id: UBERON:NIF_GrossAnatomy_birnlex_799-FMA_72470 synonym: "central gray of pons" EXACT [FMA:72470] synonym: "pontine central gray" EXACT [FMA:72470] xref: ABA:PCG xref: FMA:72470 xref: NIF_GrossAnatomy:birnlex_799 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: spatially_disjoint_from UBERON:0002143 {source="ABA"} ! dorsal tegmental nucleus relationship: spatially_disjoint_from UBERON:0002147 {source="ABA"} ! reticulotegmental nucleus relationship: spatially_disjoint_from UBERON:0002149 {source="ABA"} ! superior salivatory nucleus relationship: spatially_disjoint_from UBERON:0002151 {source="ABA"} ! pontine nuclear group relationship: spatially_disjoint_from UBERON:0002633 {source="ABA"} ! motor nucleus of trigeminal nerve relationship: spatially_disjoint_from UBERON:0002682 {source="ABA"} ! abducens nucleus relationship: spatially_disjoint_from UBERON:0002963 {source="ABA"} ! caudal pontine reticular nucleus relationship: spatially_disjoint_from UBERON:0003011 {source="ABA"} ! facial motor nucleus relationship: spatially_disjoint_from UBERON:0007632 {source="ABA"} ! barrington's nucleus [Term] id: UBERON:0002969 name: inferior temporal sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_800-FMA_83784 synonym: "inferior temporal sulcus-1" EXACT [FMA:83784] synonym: "middle temporal sulcus (szikla)" EXACT [] synonym: "second temporal sulcus" EXACT [FMA:83784] synonym: "sulcus t2" EXACT [FMA:83784] xref: BM:Tel-Cx-ITS xref: FMA:83784 xref: ncithesaurus:Inferior_Temporal_Sulcus xref: NIF_GrossAnatomy:birnlex_800 xref: SCTID:279346007 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002970 name: intermediate oculomotor nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_803-FMA_72420 synonym: "intermediate oculomotor cell column" EXACT [FMA:72420] xref: FMA:72420 xref: NIF_GrossAnatomy:birnlex_803 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter [Term] id: UBERON:0002971 name: periolivary nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_804-MA_0002757 synonym: "dorsal periolivary nucleus" EXACT [FMA:72475] synonym: "nuclei periolivares" EXACT [FMA:72475, FMA:TA] synonym: "pperi-olivary nuclei" EXACT [FMA:72475] xref: FMA:72475 xref: MA:0002757 xref: NIF_GrossAnatomy:birnlex_804 is_a: UBERON:0002680 ! regional part of metencephalon relationship: part_of UBERON:0002128 ! superior olivary complex [Term] id: UBERON:0002972 name: centromedian nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_805-FMA_62165 def: "In the anatomy of the brain, the centromedian nucleus, also known as the centrum medianum, (CM or Cm-Pf) is a part of the intralaminar nucleus (ILN) of the thalamus. There are two centromedian nuclei arranged bilaterally. It contains about 2000 neurons per cubic millimetre and has a volume of about 310 cubic millimetres with 664,000 neurons in total. [WP,unvetted]." [Wikipedia:Centromedian_nucleus] subset: uberon_slim synonym: "central magnocellular nucleus of thalamus" EXACT [FMA:62165] synonym: "central nucleus-1" EXACT [FMA:62165] synonym: "centre median nucleus" EXACT [FMA:62165] synonym: "centromedian nucleus of thalamus" EXACT [FMA:62165] synonym: "centromedian thalamic nucleus" EXACT [FMA:62165] synonym: "centrum medianum" EXACT [NIF_GrossAnatomy:birnlex_805] synonym: "centrum medianum thalami" EXACT [NIF_GrossAnatomy:birnlex_805] synonym: "noyau centre median of luys" EXACT [] synonym: "nucleus centralis centralis" EXACT [NIF_GrossAnatomy:birnlex_805] synonym: "nucleus centralis thalami (hassler)" EXACT [NIF_GrossAnatomy:birnlex_805] synonym: "nucleus centri mediani thalami" EXACT [NIF_GrossAnatomy:birnlex_805] synonym: "nucleus centromedianus" EXACT [NIF_GrossAnatomy:birnlex_805] synonym: "nucleus centromedianus thalami" EXACT [NIF_GrossAnatomy:birnlex_805] synonym: "nucleus centrum medianum" EXACT [NIF_GrossAnatomy:birnlex_805] xref: EV:0100215 xref: FMA:62165 xref: ncithesaurus:Centromedian_Nucleus_of_the_Thalamus xref: NIF_GrossAnatomy:birnlex_805 xref: SCTID:279162007 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0007692 ! implied link automatically realized ! nucleus of thalamus relationship: part_of UBERON:0002733 {source="FMA"} ! intralaminar nuclear group [Term] id: UBERON:0002973 name: parahippocampal gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_807-FMA_61918 def: "a grey matter cortical region of the brain that surrounds the hippocampus. This region plays an important role in memory encoding and retrieval. The anterior part of the gyrus includes the perirhinal and entorhinal cortices. The term parahippocampal cortex is used to refer to an area that encompasses both the posterior portion of the parahippocampal gyrus and the medial portion of the fusiform gyrus.[Wikipedia]." [Wikipedia:Parahippocampal_gyrus] subset: uberon_slim synonym: "hippocampal gyrus" EXACT [FMA:61918] xref: BTO:0004380 xref: EV:0100181 xref: FMA:61918 xref: GAID:634 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b1/Human_brainstem_anterior_view_2_description.JPG/200px-Human_brainstem_anterior_view_2_description.JPG xref: MESH:A.08.186.211.577.710 xref: ncithesaurus:Parahippocampal_Gyrus xref: NIF_GrossAnatomy:birnlex_807 xref: SCTID:279205000 is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0000349 ! limbic system relationship: part_of UBERON:0001871 ! temporal lobe relationship: surrounds UBERON:0001954 {source="Wikipedia"} ! Ammon's horn [Term] id: UBERON:0002974 name: molecular layer of cerebellar cortex alt_id: UBERON:NIF_GrossAnatomy_birnlex_810-FMA_83897 def: "The molecular layer is the outermost layer of the cerebellar cortex. It contains the parallel fibers of the granule cells, interneurons such as stellate and basket cells, and the dendrites of the underlying Purkinje cells" [GO:0021679] synonym: "cerebellar molecular layer" EXACT [GO:0021679] synonym: "cerebellum molecular cell layer" EXACT [] synonym: "cerebellum molecular layer" EXACT [] xref: FMA:83897 xref: MA:0000996 xref: ncithesaurus:Molecular_Layer_of_the_Cerebellum xref: NIF_GrossAnatomy:birnlex_810 xref: SCTID:369045002 is_a: UBERON:0004130 ! cerebellar layer relationship: part_of UBERON:0002129 ! cerebellar cortex [Term] id: UBERON:0002975 name: medial oculomotor nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_813-FMA_72421 synonym: "medial oculomotor cell column" EXACT [FMA:72421] xref: FMA:72421 xref: NIF_GrossAnatomy:birnlex_813 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter [Term] id: UBERON:0002976 name: preolivary nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_814-FMA_72474 synonym: "preolivary nuclei" EXACT [FMA:72474] xref: FMA:72474 xref: NIF_GrossAnatomy:birnlex_814 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter is_a: UBERON:0007247 ! implied link automatically realized ! superior olivary nucleus relationship: part_of UBERON:0002128 ! superior olivary complex [Term] id: UBERON:0002977 name: triangular septal nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_816-FMA_61880 synonym: "nucleus triangularis septi" EXACT [FMA:61880, FMA:TA] synonym: "triangular nucleus of septum" EXACT [FMA:61880] synonym: "triangular nucleus septum (cajal)" EXACT [NIF_GrossAnatomy:birnlex_816] xref: ABA:TRS xref: BM:Tel-Spt-STN xref: FMA:61880 xref: NIF_GrossAnatomy:birnlex_816 is_a: UBERON:0002308 ! nucleus of brain relationship: spatially_disjoint_from UBERON:0007629 {source="ABA"} ! medial septal complex [Term] id: UBERON:0002978 name: oral part of ventral lateral nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_817-FMA_62193 synonym: "nucleus lateralis oralis situs principalis" EXACT [NIF_GrossAnatomy:birnlex_817] synonym: "nucleus ventralis lateralis, pars oralis" EXACT [NIF_GrossAnatomy:birnlex_817] synonym: "nucleus ventrooralis externus, anterior part (van buren)" EXACT [NIF_GrossAnatomy:birnlex_817] synonym: "subnucleus rostralis" EXACT [NIF_GrossAnatomy:birnlex_817] synonym: "ventral anterior nucleus, pars densicellularis" EXACT [FMA:62193] synonym: "ventral lateral anterior nucleus" EXACT [FMA:62193] synonym: "ventral lateral nucleus, oral part" EXACT [FMA:62193] synonym: "ventral lateral thalamic nucleus, oral part" EXACT [FMA:62193] xref: FMA:62193 xref: NIF_GrossAnatomy:birnlex_817 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001925 ! ventral lateral nucleus [Term] id: UBERON:0002979 name: Purkinje cell layer of cerebellar cortex alt_id: UBERON:NIF_GrossAnatomy_birnlex_818-FMA_83896 def: "The Purkinje cell layer lies just underneath the molecular layer of the cerebellar cortex. It contains the neuronal cell bodies of the Purkinje cells that are arranged side by side in a single layer. Candelabrum interneurons are vertically oriented between the Purkinje cells. Purkinje neurons are inhibitory and provide the output of the cerebellar cortex through axons that project into the white matter. Extensive dendritic trees from the Purkinje cells extend upward in a single plane into the molecular layer where they synapse with parallel fibers of granule cells." [GO:0021680] synonym: "cerebellar Purkinje cell layer" EXACT [FMA:83896, GO:0021694] synonym: "cerebellum Purkinje cell layer" EXACT [] synonym: "cerebellum Purkinje layer" EXACT [] synonym: "Purkinje cell layer" EXACT [FMA:83896] xref: ABA:CBXpu xref: BTO:0004909 xref: FMA:83896 xref: MA:0000997 xref: ncithesaurus:Purkinje_Cell_Layer_of_the_Cerebellum xref: NIF_GrossAnatomy:birnlex_818 is_a: UBERON:0004130 ! cerebellar layer relationship: part_of UBERON:0002129 ! cerebellar cortex relationship: spatially_disjoint_from UBERON:0002956 {source="ABA"} ! granular layer of cerebellar cortex [Term] id: UBERON:0002980 name: opercular part of inferior frontal gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_823-FMA_61981 synonym: "opercular portion of inferior frontal gyrus" EXACT [FMA:61981] synonym: "pars opercularis gyri frontalis inferioris" EXACT [NIF_GrossAnatomy:birnlex_823] synonym: "posterior part of inferior frontal gyrus" EXACT [FMA:61981] xref: FMA:61981 xref: NIF_GrossAnatomy:birnlex_823 is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0002981 name: pulvinar nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_824-FMA_62178 def: "The pulvinar is the caudal-most nucleus of the thalamus. The pulvinar is usually grouped as one of the lateral thalamic nuclei. [WP,unvetted]." [Wikipedia:Pulvinar] subset: uberon_slim synonym: "nuclei pulvinares" EXACT [FMA:62178, FMA:TA] synonym: "pulvinar" EXACT [FMA:62178] synonym: "pulvinar nuclei" EXACT [FMA:62178] synonym: "pulvinar thalami" EXACT [NIF_GrossAnatomy:birnlex_824] xref: BM:Die-Th-Pl xref: BTO:0004352 xref: EV:0100213 xref: FMA:62178 xref: GAID:662 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b7/Gray719.png/200px-Gray719.png xref: MESH:A.08.186.211.730.385.826.701.485.600 xref: NIF_GrossAnatomy:birnlex_824 xref: SCTID:279157006 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter [Term] id: UBERON:0002982 name: inferior pulvinar nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_830-FMA_62183 synonym: "nucleus pulvinaris inferior" EXACT [NIF_GrossAnatomy:birnlex_830] synonym: "nucleus pulvinaris inferior thalami" EXACT [NIF_GrossAnatomy:birnlex_830] synonym: "nucleus pulvinaris thalami, pars inferior" EXACT [NIF_GrossAnatomy:birnlex_830] xref: BM:Die-Th-Pl-Pli xref: FMA:62183 xref: NIF_GrossAnatomy:birnlex_830 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter [Term] id: UBERON:0002983 name: lateral posterior nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_835-FMA_62177 synonym: "lateral posterior nucleus of thalamus" EXACT [FMA:62177] synonym: "lateral posterior nucleus of the thalamus" EXACT [NIF_GrossAnatomy:birnlex_835] synonym: "lateral posterior thalamic nucleus" EXACT [FMA:62177] synonym: "laterodorsal nucleus, caudal part" EXACT [FMA:62177] synonym: "nucleus dorso-caudalis" EXACT [NIF_GrossAnatomy:birnlex_835] synonym: "nucleus dorsocaudalis (hassler)" EXACT [NIF_GrossAnatomy:birnlex_835] synonym: "nucleus lateralis posterior" EXACT [NIF_GrossAnatomy:birnlex_835] synonym: "nucleus lateralis posterior thalami" EXACT [NIF_GrossAnatomy:birnlex_835] synonym: "nucleus lateralis thalami posterior" EXACT [NIF_GrossAnatomy:birnlex_835] synonym: "posterior lateral nucleus of thalamus" EXACT [FMA:62177] xref: ABA:LP xref: BM:Die-Th-LP xref: BTO:0004351 xref: EV:0100212 xref: FMA:62177 xref: ncithesaurus:Lateral_Posterior_Nucleus_of_the_Thalamus xref: NIF_GrossAnatomy:birnlex_835 xref: SCTID:279155003 is_a: UBERON:0002308 ! nucleus of brain relationship: spatially_disjoint_from UBERON:0002709 {source="ABA"} ! posterior nuclear complex relationship: spatially_disjoint_from UBERON:0003033 {source="ABA"} ! suprageniculate nucleus [Term] id: UBERON:0002984 name: lateral dorsal nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_838-FMA_62176 synonym: "lateral dorsal nucleus of thalamus" EXACT [FMA:62176] synonym: "lateral dorsal thalamic nucleus" EXACT [FMA:62176] synonym: "laterodorsal nucleus nucleus of thalamus" EXACT [NIF_GrossAnatomy:birnlex_838] synonym: "laterodorsal nucleus thalamic nucleus" EXACT [NIF_GrossAnatomy:birnlex_838] synonym: "laterodorsal nucleus, superficial part" EXACT [FMA:62176] synonym: "laterodorsal thalamic nucleus" EXACT [FMA:62176] synonym: "nucleus dorsalis lateralis thalami" EXACT [FMA:62176, FMA:TA] synonym: "nucleus dorsalis superficialis (hassler)" EXACT [NIF_GrossAnatomy:birnlex_838] synonym: "nucleus dorsolateralis thalami" EXACT [NIF_GrossAnatomy:birnlex_838] synonym: "nucleus lateralis dorsalis" EXACT [NIF_GrossAnatomy:birnlex_838] synonym: "nucleus lateralis dorsalis of thalamus" EXACT [NIF_GrossAnatomy:birnlex_838] synonym: "nucleus lateralis dorsalis thalami" EXACT [NIF_GrossAnatomy:birnlex_838] synonym: "nucleus lateralis thalami dorsalis" EXACT [NIF_GrossAnatomy:birnlex_838] xref: ABA:LD xref: BM:Die-Th-LD xref: BTO:0004349 xref: BTO:0004350 xref: EV:0100211 xref: FMA:62176 xref: NIF_GrossAnatomy:birnlex_838 xref: SCTID:279154004 is_a: UBERON:0002308 ! nucleus of brain relationship: spatially_disjoint_from UBERON:0002679 {source="ABA"} ! anterodorsal nucleus relationship: spatially_disjoint_from UBERON:0002681 {source="ABA"} ! anteromedial nucleus relationship: spatially_disjoint_from UBERON:0002685 {source="ABA"} ! anteroventral nucleus [Term] id: UBERON:0002985 name: ventral nucleus of medial geniculate body alt_id: UBERON:NIF_GrossAnatomy_birnlex_845-FMA_62217 synonym: "medial geniculate complex, ventral part" EXACT [FMA:62217] synonym: "medial geniculate nucleus, ventral part" EXACT [FMA:62217] synonym: "medial nucleus of medial geniculate complex" EXACT [NIF_GrossAnatomy:birnlex_845] synonym: "nucleus corporis geniculati medialis, pars ventralis" EXACT [NIF_GrossAnatomy:birnlex_845] synonym: "nucleus geniculatus medialis fasciculosus (hassler)" EXACT [NIF_GrossAnatomy:birnlex_845] synonym: "nucleus geniculatus medialis pars ventralis" EXACT [NIF_GrossAnatomy:birnlex_845] synonym: "nucleus ventralis corporis geniculati medialis" EXACT [FMA:62217, FMA:TA] synonym: "ventral nucleus of medial geniculate complex" EXACT [FMA:62217] synonym: "ventral principal nucleus of medial geniculate body" EXACT [FMA:62217] xref: ABA:MGv xref: BM:Die-Th-MG-MGv xref: BTO:0002671 xref: FMA:62217 xref: NIF_GrossAnatomy:birnlex_845 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter is_a: UBERON:0006569 ! implied link automatically realized ! diencephalic nucleus relationship: part_of UBERON:0001927 ! medial geniculate body relationship: spatially_disjoint_from UBERON:0002758 {source="ABA"} ! dorsal nucleus of medial geniculate body relationship: spatially_disjoint_from UBERON:0002759 {source="ABA"} ! magnocellular nucleus of medial geniculate body [Term] id: UBERON:0002986 name: neurofilament alt_id: UBERON:NIF_GrossAnatomy_birnlex_846-FMA_63859 def: "." [Wikipedia:Neurofilament] subset: uberon_slim synonym: "neuronal intermediate filament" EXACT [FMA:63859] xref: FMA:63859 xref: GO:0005883 xref: ncithesaurus:Neurofilament xref: NIF_GrossAnatomy:birnlex_846 xref: NIF_Subcellular:sao1316272517 is_a: UBERON:0003000 ! intermediate filament [Term] id: UBERON:0002987 name: anterior spinocerebellar tract alt_id: UBERON:NIF_GrossAnatomy_birnlex_848-FMA_72642 def: "The ventral spinocerebellar tract conveys proprioceptive information from the body to the cerebellum. It is part of the somatosensory system and runs in parallel with the dorsal spinocerebellar tract. Both these tracts involve two neurons and end up on the same side of the body. The ventral tract (under L2/L3) gets its proprioceptive/fine touch/vibration information from a first order neuron, with its cell body in a dorsal ganglion. The axon runs via the fila radicularia to the dorsal horn of the grey matter. There it makes a synapse with the dendrites of two neurons: they send their axons bilaterally to the ventral border of the lateral funiculi. The ventral spinocerebellar tract then enters the cerebellum via the superior cerebellar peduncle. This is in contrast with the dorsal spinocerebellar tract (C8 - L2/L3), which only has 1 unilateral axon that has its cell body in the Clarke's nuclei (only at the level of C8 - L2/L3). The fibers of the ventral spinocerebellar tract then eventually enter the cerebellum via the superior cerebellar peduncle. This is one of the few afferent tracts through the superior cerebellar peduncle. Originates from ventral horn at lumbosacral spinal levels. Axons first cross midline in the spinal cord and run in the ventral border of the lateral funiculi. These axons ascend up to the pons where they join the superior cerebellar peduncle to enter the cerebellum. Once in the deep white matter of the cerebellum, the axons recross the midline, give off collaterals to the globose and emboliform nuclei, and terminate in the cortex of the anterior lobe and vermis of the posterior lobe. [WP,unvetted]." [Wikipedia:Anterior_spinocerebellar_tract] subset: uberon_slim synonym: "gower's tract" EXACT [NIF_GrossAnatomy:birnlex_848] synonym: "gowers' tract" EXACT [FMA:72642] synonym: "ventral spinocerebellar tract" EXACT [FMA:72642] xref: FMA:72642 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Medulla_spinalis_-_tracts_-_English.svg/200px-Medulla_spinalis_-_tracts_-_English.svg.png xref: NIF_GrossAnatomy:birnlex_848 xref: SCTID:369285001 is_a: UBERON:0002316 ! white matter is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter relationship: part_of UBERON:0001896 ! medulla oblongata relationship: part_of UBERON:0005413 ! spinocerebellar tract [Term] id: UBERON:0002988 name: first dorsal interosseous of hand synonym: "abductor indicis" EXACT [FMA:37424] xref: FMA:37424 xref: SCTID:245003002 is_a: UBERON:0001503 {source="FMA"} ! dorsal interosseous of hand [Term] id: UBERON:0002989 name: anconeus def: "small muscle on the posterior aspect of the elbow joint." [Wikipedia:Anconeus_muscle] comment: Some consider anconeus to be a continuation of the triceps brachii muscle. Some sources consider it to be part of the posterior compartment of the arm, while others consider it part of the posterior compartment of the forearm. synonym: "anconeus muscle" EXACT [Wikipedia:Anconeus_muscle] xref: FMA:37704 xref: SCTID:244993003 is_a: UBERON:0004255 {source="FMA"} ! forelimb stylopod muscle [Term] id: UBERON:0002990 name: mammillothalamic tract of hypothalamus alt_id: UBERON:NIF_GrossAnatomy_birnlex_855-FMA_62059 xref: FMA:62059 xref: NIF_GrossAnatomy:birnlex_855 xref: SCTID:369139008 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0002991 name: supramammillary commissure alt_id: UBERON:NIF_GrossAnatomy_birnlex_859-FMA_62056 synonym: "commissure of forel" EXACT [] synonym: "commissure y" EXACT [FMA:62056] synonym: "postmammillary decussation" EXACT [FMA:62056] synonym: "supramammillary decussation" EXACT [FMA:62056] xref: FMA:62056 xref: NIF_GrossAnatomy:birnlex_859 xref: SCTID:369148003 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0002992 name: paratenial nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_860-FMA_62151 def: "One of the median nuclei of the thalamus, situated ventral and medial to the stria medullaris." [BTO:0002457] synonym: "nucleus parataenialis" EXACT [BTO:0002457] synonym: "nucleus parataenialis" EXACT [FMA:62151, FMA:TA] synonym: "nucleus parataenialis thalami" RELATED [BTO:0002457] synonym: "parataenial nucleus" EXACT [FMA:62151] synonym: "paratenial nucleus of thalamus" RELATED [BTO:0002457] synonym: "paratenial thalamic nucleus" EXACT [FMA:62151] xref: ABA:PT xref: BTO:0002457 xref: FMA:62151 xref: NIF_GrossAnatomy:birnlex_860 xref: SCTID:422800004 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0007692 ! implied link automatically realized ! nucleus of thalamus relationship: part_of UBERON:0002705 {source="ABA", source="FMA", source="NIF"} ! midline nuclear group relationship: spatially_disjoint_from UBERON:0001920 {source="ABA"} ! paraventricular nucleus of thalamus [Term] id: UBERON:0002993 name: inferior central nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_861-FMA_72466 comment: todo - compare with UBERON:0002881 subset: uberon_slim synonym: "inferior central nucleus (of roller)" EXACT [FMA:72466] synonym: "inferior central nucleus of raphe" EXACT [FMA:72466] synonym: "inferior central tegmental nucleus" EXACT [FMA:72466] xref: FMA:72466 xref: NIF_GrossAnatomy:birnlex_861 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter is_a: UBERON:0007413 {source="FMA"} ! nucleus of pontine reticular formation relationship: part_of UBERON:0002573 {source="FMA"} ! pontine reticular formation [Term] id: UBERON:0002994 name: nucleus of pretectal area alt_id: UBERON:NIF_GrossAnatomy_birnlex_864-FMA_72401 synonym: "pretectal area nucleus" EXACT [FMA:72401] xref: FMA:72401 xref: NIF_GrossAnatomy:birnlex_864 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003047 ! implied link automatically realized ! regional part of pretectal region is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter is_a: UBERON:0009661 ! implied link automatically realized ! midbrain nucleus relationship: part_of UBERON:0001944 ! pretectal region [Term] id: UBERON:0002995 name: substantia nigra pars lateralis alt_id: UBERON:NIF_GrossAnatomy_birnlex_866-MA_0001065 def: "Regional part of substantia nigra consisting of loosely packed cells, generally located ventral and lateral to the pars compacta. Many cells in this region use GABA as a neurotransmitter (MM)." [NIF_GrossAnatomy:birnlex_866] comment: disjointness violation - relationship: part_of UBERON:0001966 {source="NIF"} synonym: "lateral part of substantia nigra" EXACT [FMA:76844] synonym: "pars lateralis" EXACT [NIF_GrossAnatomy:birnlex_866] synonym: "Substantia nigra, lateral part" EXACT [ABA:SNI] xref: ABA:SNI xref: FMA:76844 xref: MA:0001065 xref: NIF_GrossAnatomy:birnlex_866 is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon is_a: UBERON:0002950 ! regional part of midbrain relationship: part_of UBERON:0002038 {source="MA"} ! substantia nigra relationship: spatially_disjoint_from UBERON:0001715 {source="ABA"} ! oculomotor nuclear complex relationship: spatially_disjoint_from UBERON:0001944 {source="ABA"} ! pretectal region relationship: spatially_disjoint_from UBERON:0001947 {source="ABA"} ! red nucleus relationship: spatially_disjoint_from UBERON:0001966 {source="ABA"} ! substantia nigra pars reticulata relationship: spatially_disjoint_from UBERON:0002141 {source="ABA"} ! parvocellular oculomotor nucleus relationship: spatially_disjoint_from UBERON:0002438 {source="ABA"} ! ventral tegmental nucleus relationship: spatially_disjoint_from UBERON:0002691 {source="ABA"} ! ventral tegmental area relationship: spatially_disjoint_from UBERON:0002696 {source="ABA"} ! cuneiform nucleus relationship: spatially_disjoint_from UBERON:0002722 {source="ABA"} ! trochlear nucleus relationship: spatially_disjoint_from UBERON:0003040 {source="ABA"} ! central gray substance of midbrain [Term] id: UBERON:0002996 name: nucleus of optic tract alt_id: UBERON:NIF_GrossAnatomy_birnlex_868-FMA_72403 synonym: "large-celled nucleus of optic tract" EXACT [FMA:72403] synonym: "lentiform nucleus of pretectal area" EXACT [FMA:72403] synonym: "nucleus of the optic tract" EXACT [NIF_GrossAnatomy:birnlex_868] synonym: "optic tract nucleus" EXACT [FMA:72403] xref: ABA:NOT xref: FMA:72403 xref: NIF_GrossAnatomy:birnlex_868 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003047 ! implied link automatically realized ! regional part of pretectal region is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter is_a: UBERON:0009661 ! implied link automatically realized ! midbrain nucleus relationship: part_of UBERON:0001944 ! pretectal region relationship: spatially_disjoint_from UBERON:0002565 {source="ABA"} ! olivary pretectal nucleus relationship: spatially_disjoint_from UBERON:0002711 {source="ABA"} ! nucleus of posterior commissure relationship: spatially_disjoint_from UBERON:0006848 {source="ABA"} ! posterior pretectal nucleus [Term] id: UBERON:0002997 name: nucleus of medial eminence alt_id: UBERON:NIF_GrossAnatomy_birnlex_870-FMA_72467 synonym: "medial eminence nucleus" EXACT [FMA:72467] synonym: "nucleus of eminentia teres" EXACT [FMA:72467] xref: FMA:72467 xref: NIF_GrossAnatomy:birnlex_870 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter [Term] id: UBERON:0002998 name: inferior frontal gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_873-FMA_61860 def: "The inferior frontal gyrus is a gyrus of the frontal lobe of the human brain. Its superior border is the inferior frontal sulcus, its inferior border the lateral fissure, and its posterior border is the inferior precentral sulcus. Above it is the middle frontal gyrus, behind it the precentral gyrus. [WP,unvetted]." [Wikipedia:Inferior_frontal_gyrus] subset: uberon_slim synonym: "inferior frontal convolution" EXACT [FMA:61860] xref: BTO:0004835 xref: FMA:61860 xref: ncithesaurus:Inferior_Frontal_Convolution xref: NIF_GrossAnatomy:birnlex_873 xref: SCTID:362333004 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001870 ! frontal cortex [Term] id: UBERON:0002999 name: oral pontine reticular nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_875-FMA_72468 def: "The oral pontine reticular nucleus is delineated from its caudal brother, with which it shares its first three names. This nucleus tapers into the lower mesencephalic reticular formation and contains sporadic giant cells. Different populations of the pontis oralis have displayed discharge patterns which coordinate with phasic movements to and from paradoxical sleep. From this information it has been implied that the n.r. pontis oralis is involved in the mediation of changing to and from REM sleep. [WP,unvetted]." [Wikipedia:Oral_pontine_reticular_nucleus] subset: uberon_slim synonym: "pontine reticular nucleus, rostral part" EXACT [FMA:72468] xref: ABA:PRNv xref: FMA:72468 xref: NIF_GrossAnatomy:birnlex_875 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter is_a: UBERON:0007413 {source="FMA"} ! nucleus of pontine reticular formation relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum [Term] id: UBERON:0003000 name: intermediate filament alt_id: UBERON:NIF_GrossAnatomy_birnlex_879-FMA_63851 def: "." [Wikipedia:Intermediate_filament] subset: uberon_slim xref: FMA:63851 xref: GAID:1079 xref: GO:0005882 xref: MESH:A.11.284.195.190.750.410 xref: ncithesaurus:Intermediate_Filament xref: NIF_GrossAnatomy:birnlex_879 xref: NIF_Subcellular:sao952483289 is_a: UBERON:0000470 ! cell part [Term] id: UBERON:0003001 name: lemniscus alt_id: UBERON:NIF_GrossAnatomy_birnlex_881-FMA_76742 def: "A bundle or band of sensory nerve fibers. ribbon, from Greek lemniskos." [NIF_GrossAnatomy:birnlex_881, Wikipedia:Lemniscus_(anatomy)] subset: uberon_slim xref: FMA:76742 xref: NIF_GrossAnatomy:birnlex_881 is_a: UBERON:0002616 ! regional part of brain [Term] id: UBERON:0003002 name: medial lemniscus alt_id: UBERON:NIF_GrossAnatomy_birnlex_887-FMA_83675 def: "The medial lemniscus, also known as Reil's band or Reil's ribbon, is a pathway in the brainstem that carries sensory information from the gracile and cuneate nuclei to the thalamus. [WP,unvetted]." [Wikipedia:Medial_lemniscus] subset: uberon_slim xref: BM:LM xref: FMA:83675 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Gray759.png/200px-Gray759.png xref: NIF_GrossAnatomy:birnlex_887 xref: SCTID:362398006 is_a: UBERON:0002316 ! white matter is_a: UBERON:0003001 ! lemniscus is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter [Term] id: UBERON:0003003 name: microfilament alt_id: UBERON:NIF_GrossAnatomy_birnlex_888-FMA_63850 def: "." [Wikipedia:Microfilament] subset: uberon_slim synonym: "actin filament" EXACT [FMA:63850] synonym: "microfilament" EXACT [FMA:63850] synonym: "microfilamentum" EXACT [FMA:63850] xref: FMA:63850 xref: GAID:1080 xref: GO:0005884 xref: MESH:A.11.284.195.190.750.510 xref: ncithesaurus:Actin_Filament xref: NIF_GrossAnatomy:birnlex_888 xref: NIF_Subcellular:sao2006047981 is_a: UBERON:0000470 ! cell part [Term] id: UBERON:0003004 name: median raphe nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_889-FMA_72465 def: "The median raphe nucleus (or superior central nucleus) is composed of polygonal, fusiform and pyriform neurons and exists rostral to the nucleus raphe pontis. One trait of the MRN is its inhibition by lysergic acid diethylamide and psilocin, two serotonin antagonist hallucinogens. The inactivation of the nucleus centralis superior via LSD produces a dose dependent inactivation in the MRN, but not in the raphe pallidus[WP,unvetted]." [https://sourceforge.net/tracker/?func=detail&atid=440764&aid=3248146&group_id=36855, Wikipedia:Median_raphe_nucleus] comment: TODO: The term medial raphe nucleus refers to a composite structure that consists of the superior central nucleus and the inferior central nucleus of the pontine reticular formation ( Carpenter-1983 )[http://braininfo.rprc.washington.edu/centraldirectory.aspx?type=h&ID=1391] subset: uberon_slim synonym: "cell group b8" EXACT [] synonym: "medial raphe nucleus" EXACT [] synonym: "median nucleus of the raphe" EXACT [FMA:72465] synonym: "MRN" EXACT [] synonym: "nucleus raphes medianus" EXACT [FMA:72465, FMA:TA] synonym: "superior central nucleus" EXACT [FMA:72465] synonym: "superior central nucleus raphe" EXACT [FMA:72465] synonym: "superior central tegmental nucleus" EXACT [FMA:72465] xref: ABA:CS xref: BM:MR xref: FMA:72465 xref: NIF_GrossAnatomy:birnlex_889 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter is_a: UBERON:0007415 ! implied link automatically realized ! nucleus of midbrain reticular formation relationship: part_of UBERON:0002639 {source="Wikipedia"} ! midbrain reticular formation relationship: part_of UBERON:0004684 {source="Wikipedia"} ! raphe nuclei relationship: spatially_disjoint_from UBERON:0002047 {source="ABA"} ! pontine raphe nucleus relationship: spatially_disjoint_from UBERON:0002148 {source="ABA"} ! locus ceruleus relationship: spatially_disjoint_from UBERON:0002267 {source="ABA"} ! laterodorsal tegmental nucleus relationship: spatially_disjoint_from UBERON:0002587 {source="ABA"} ! nucleus subceruleus [Term] id: UBERON:0003005 name: dorsal longitudinal fasciculus of midbrain alt_id: UBERON:NIF_GrossAnatomy_birnlex_893-FMA_72453 def: "A dorsal longitudinal fasciculus that is part of a midbrain [Obol]." [OBOL:automatic] synonym: "bundle of Schutz of midbrain" EXACT [OBOL:automatic] synonym: "fasciculus of Schutz of midbrain" EXACT [OBOL:automatic] synonym: "midbrain bundle of Schutz" EXACT [OBOL:automatic] synonym: "midbrain dorsal longitudinal fasciculus" EXACT [OBOL:automatic] synonym: "midbrain fasciculus of Schutz" EXACT [OBOL:automatic] synonym: "midbrain posterior longitudinal fasciculus" EXACT [OBOL:automatic] synonym: "posterior longitudinal fasciculus of midbrain" EXACT [OBOL:automatic] xref: FMA:72453 xref: NIF_GrossAnatomy:birnlex_893 is_a: UBERON:0003045 ! dorsal longitudinal fasciculus relationship: part_of UBERON:0001891 intersection_of: UBERON:0003045 ! dorsal longitudinal fasciculus intersection_of: part_of UBERON:0001891 ! midbrain relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0003006 name: dorsal nucleus of lateral lemniscus alt_id: UBERON:NIF_GrossAnatomy_birnlex_894-FMA_72483 synonym: "dorsal nucleus of the lateral lemniscus" EXACT [FMA:72483] synonym: "nucleus of the lateral lemniscus, dorsal part" EXACT [ABA:NLLd] synonym: "nucleus posterior lemnisci lateralis" EXACT [FMA:72483, FMA:TA] synonym: "posterior nucleus of lateral lemniscus" EXACT [FMA:72483] xref: ABA:NLLd xref: BM:LLD xref: FMA:72483 xref: NIF_GrossAnatomy:birnlex_894 is_a: UBERON:0006840 ! nucleus of lateral lemniscus [Term] id: UBERON:0003007 name: lateral parabrachial nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_897-FMA_72481 def: "The lateral parabrachial nucleus induces thirst by stimulating the median preoptic nucleus. It gets its name from its location relative to the superior cerebellar peduncles, which is also known as the 'brachia conjunctiva'. [WP,unvetted]." [Wikipedia:Lateral_parabrachial_nucleus] subset: uberon_slim xref: FMA:72481 xref: NIF_GrossAnatomy:birnlex_897 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0003008 name: dorsal longitudinal fasciculus of hypothalamus alt_id: UBERON:NIF_GrossAnatomy_birnlex_898-FMA_62063 def: "A dorsal longitudinal fasciculus that is part of a hypothalamus [Obol]." [OBOL:automatic] synonym: "bundle of Schutz of hypothalamus" EXACT [OBOL:automatic] synonym: "bundle of Schutz of preoptico-hypothalamic area" EXACT [OBOL:automatic] synonym: "bundle of Schutz of preoptico-hypothalamic region" EXACT [OBOL:automatic] synonym: "dorsal longitudinal fasciculus of preoptico-hypothalamic area" EXACT [OBOL:automatic] synonym: "dorsal longitudinal fasciculus of preoptico-hypothalamic region" EXACT [OBOL:automatic] synonym: "fasciculus of Schutz of hypothalamus" EXACT [OBOL:automatic] synonym: "fasciculus of Schutz of preoptico-hypothalamic area" EXACT [OBOL:automatic] synonym: "fasciculus of Schutz of preoptico-hypothalamic region" EXACT [OBOL:automatic] synonym: "hypothalamus bundle of Schutz" EXACT [OBOL:automatic] synonym: "hypothalamus dorsal longitudinal fasciculus" EXACT [OBOL:automatic] synonym: "hypothalamus fasciculus of Schutz" EXACT [OBOL:automatic] synonym: "hypothalamus posterior longitudinal fasciculus" EXACT [OBOL:automatic] synonym: "posterior longitudinal fasciculus of hypothalamus" EXACT [OBOL:automatic] synonym: "posterior longitudinal fasciculus of preoptico-hypothalamic area" EXACT [OBOL:automatic] synonym: "posterior longitudinal fasciculus of preoptico-hypothalamic region" EXACT [OBOL:automatic] synonym: "preoptico-hypothalamic area bundle of Schutz" EXACT [OBOL:automatic] synonym: "preoptico-hypothalamic area dorsal longitudinal fasciculus" EXACT [OBOL:automatic] synonym: "preoptico-hypothalamic area fasciculus of Schutz" EXACT [OBOL:automatic] synonym: "preoptico-hypothalamic area posterior longitudinal fasciculus" EXACT [OBOL:automatic] synonym: "preoptico-hypothalamic region bundle of Schutz" EXACT [OBOL:automatic] synonym: "preoptico-hypothalamic region dorsal longitudinal fasciculus" EXACT [OBOL:automatic] synonym: "preoptico-hypothalamic region fasciculus of Schutz" EXACT [OBOL:automatic] synonym: "preoptico-hypothalamic region posterior longitudinal fasciculus" EXACT [OBOL:automatic] xref: FMA:62063 xref: NIF_GrossAnatomy:birnlex_898 is_a: UBERON:0002316 ! white matter is_a: UBERON:0003045 ! dorsal longitudinal fasciculus is_a: UBERON:0003048 ! implied link automatically realized ! regional part of hypothalamus is_a: UBERON:0003931 ! implied link automatically realized ! diencephalic white matter relationship: part_of UBERON:0001898 intersection_of: UBERON:0003045 ! dorsal longitudinal fasciculus intersection_of: part_of UBERON:0001898 ! hypothalamus relationship: part_of UBERON:0002430 ! lateral hypothalamic area [Term] id: UBERON:0003009 name: dorsal tegmental decussation alt_id: UBERON:NIF_GrossAnatomy_birnlex_901-FMA_72451 synonym: "decussatio tegmentalis posterior" EXACT [FMA:72451, FMA:TA] synonym: "dorsal fountain decussation" EXACT [FMA:72451] synonym: "fountain decussation of meynert" EXACT [] synonym: "meynert's decussation" EXACT [FMA:72451] synonym: "posterior tegmental decussation" EXACT [FMA:72451] xref: FMA:72451 xref: NIF_GrossAnatomy:birnlex_901 xref: SCTID:369248009 is_a: UBERON:0002316 ! white matter is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0003010 name: lateral pes lemniscus alt_id: UBERON:NIF_GrossAnatomy_birnlex_902-FMA_72459 synonym: "deep pes lemniscus" EXACT [FMA:72459] synonym: "lateral pontine bundle" EXACT [FMA:72459] synonym: "laterale haubenfussschleife" EXACT [] synonym: "laterale pontine buendel" EXACT [] xref: FMA:72459 xref: NIF_GrossAnatomy:birnlex_902 is_a: UBERON:0002316 ! white matter is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0003011 name: facial motor nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_903-FMA_54582 def: "The facial motor nucleus is a collection of neurons in the brainstem that belong to the facial nerve. These lower motor neurons innervate the muscles of facial expression and the stapedius. [WP,unvetted]." [Wikipedia:Facial_motor_nucleus] comment: see comments for facial nucleus. also check ZFA/pons subset: uberon_slim subset: vertebrate_core synonym: "branchiomotor nucleus of facial nerve" EXACT [FMA:54582] synonym: "facial motor nucleus" EXACT [FMA:54582] synonym: "facial nerve motor nucleus" EXACT [ZFA:0000206] synonym: "facial nucleus" RELATED [Wikipedia:Facial_nucleus] synonym: "motor nucleus of facial nerve" EXACT [FMA:54582] synonym: "motor nucleus of VII" EXACT [FMA:54582] synonym: "motor nucleus VII" EXACT [ZFA:0000206] synonym: "nucleus motorius nervi facialis" EXACT [ZFA:0000206] synonym: "nVII" EXACT [ZFA:0000206] xref: ABA:VII xref: FMA:54582 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6b/Gray788.png/200px-Gray788.png xref: NIF_GrossAnatomy:birnlex_903 xref: ZFA:0000206 is_a: UBERON:0000127 ! facial nucleus relationship: spatially_disjoint_from UBERON:0002143 {source="ABA"} ! dorsal tegmental nucleus relationship: spatially_disjoint_from UBERON:0002147 {source="ABA"} ! reticulotegmental nucleus relationship: spatially_disjoint_from UBERON:0002149 {source="ABA"} ! superior salivatory nucleus relationship: spatially_disjoint_from UBERON:0002151 {source="ABA"} ! pontine nuclear group relationship: spatially_disjoint_from UBERON:0002633 {source="ABA"} ! motor nucleus of trigeminal nerve relationship: spatially_disjoint_from UBERON:0002682 {source="ABA"} ! abducens nucleus relationship: spatially_disjoint_from UBERON:0002963 {source="ABA"} ! caudal pontine reticular nucleus relationship: spatially_disjoint_from UBERON:0002968 {source="ABA"} ! central gray substance of pons relationship: spatially_disjoint_from UBERON:0007632 {source="ABA"} ! barrington's nucleus [Term] id: UBERON:0003012 name: flocculonodular lobe alt_id: UBERON:NIF_GrossAnatomy_birnlex_904-FMA_72253 def: "The flocculonodular lobe is a lobe of the cerebellum consisting of the nodule and the flocculus. It is closely associated with the vestibulocerebellum. [WP,unvetted]." [Wikipedia:Flocculonodular_lobe] subset: uberon_slim synonym: "cerebellum flocculonodular lobe" EXACT [MA:0002965] synonym: "flocculonodular lobe" EXACT [FMA:72253] synonym: "flocculonodular lobe of cerebellum" EXACT [FMA:72253] synonym: "lobus flocculonodularis" EXACT [FMA:72253, FMA:TA] synonym: "posterior lobe-2 of cerebellum" EXACT [FMA:72253] xref: EV:0100297 xref: FMA:72253 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/43/CerebellumDiv.png/200px-CerebellumDiv.png xref: MA:0002965 xref: NIF_GrossAnatomy:birnlex_904 xref: SCTID:279361008 is_a: UBERON:0005293 ! cerebellum lobe [Term] id: UBERON:0003013 name: alar central lobule alt_id: UBERON:NIF_GrossAnatomy_birnlex_907-FMA_72517 def: "The lobulus centralis is a small square lobule, situated in the anterior cerebellar notch. It overlaps the lingula, from which it is separated by the precentral fissure; laterally, it extends along the upper and anterior part of each hemisphere, where it forms a wing-like prolongation, the alar central lobule. [WP,unvetted]." [Wikipedia:Alar_central_lobule] subset: uberon_slim synonym: "alae of central lobule" EXACT [FMA:72517] synonym: "lobules II, III of vermis" EXACT [FMA:72517] xref: FMA:72517 xref: NIF_GrossAnatomy:birnlex_907 is_a: UBERON:0004003 ! cerebellum hemisphere lobule [Term] id: UBERON:0003015 name: anterior quadrangular lobule alt_id: UBERON:NIF_GrossAnatomy_birnlex_913-FMA_72516 synonym: "anterior crescentic lobule of cerebellum" EXACT [FMA:72516] synonym: "anterior quadrangular lobule of cerebellum" EXACT [FMA:72516] synonym: "anterior quadrangular lobule of cerebellum [H IV et V]" EXACT [FMA:72516] synonym: "anterior semilunar lobule" EXACT [FMA:72516] synonym: "lobulus quadrangularis anterior cerebelli [h iv et v]" EXACT [FMA:72516, FMA:TA] synonym: "semilunar lobule-1 (anterior)" EXACT [FMA:72516] xref: FMA:72516 xref: NIF_GrossAnatomy:birnlex_913 xref: SCTID:369041006 is_a: UBERON:0004003 ! cerebellum hemisphere lobule is_a: UBERON:0004004 ! cerebellum lobule [Term] id: UBERON:0003016 name: postcommissural fornix alt_id: UBERON:NIF_GrossAnatomy_birnlex_914-FMA_62062 xref: FMA:62062 xref: NIF_GrossAnatomy:birnlex_914 is_a: UBERON:0000052 ! fornix of brain is_a: UBERON:0003048 ! implied link automatically realized ! regional part of hypothalamus is_a: UBERON:0003931 ! implied link automatically realized ! diencephalic white matter relationship: part_of UBERON:0002430 ! lateral hypothalamic area [Term] id: UBERON:0003017 name: substantia innominata alt_id: UBERON:NIF_GrossAnatomy_birnlex_915-FMA_61885 def: "The substantia innominata (literally 'unnamed substance') of Meynert is a stratum consisting partly of gray and partly of white substance, which lies below the anterior part of the thalamus and lentiform nucleus. The gross anatomical structure is called anterior perforated substance because to the naked eye looks perforated by many holes. Holes are due to many blood vessels that pass through this area. It is part of the basal forebrain. [WP,unvetted]." [Wikipedia:Substantia_innominata] subset: uberon_slim synonym: "innominate substance" EXACT [FMA:61885] synonym: "nucleus of substantia innominata" EXACT [FMA:61885] synonym: "substantia innominata of Reichert" RELATED [BTO:0002447] synonym: "substantia innominata of Reil" RELATED [BTO:0002447] xref: ABA:SI xref: BM:Tel-SI xref: BTO:0002447 xref: FMA:61885 xref: GAID:638 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/36/Substantia_innominata_MRI.PNG/200px-Substantia_innominata_MRI.PNG xref: MESH:A.08.186.211.577.820 xref: NIF_GrossAnatomy:birnlex_915 is_a: UBERON:0002308 ! nucleus of brain relationship: spatially_disjoint_from UBERON:0007627 {source="ABA"} ! magnocellular nucleus [Term] id: UBERON:0003018 name: parvicellular part of ventral posteromedial nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_917-FMA_62207 synonym: "gustatory nucleus (thalamus)" EXACT [NIF_GrossAnatomy:birnlex_917] synonym: "gustatory thalamic nucleus" EXACT [FMA:62207] synonym: "nucleus ventralis posterior medialis thalami, pars parvicellularis" EXACT [NIF_GrossAnatomy:birnlex_917] synonym: "pars parvicellularis nuclei ventralis posteromedialis thalami" EXACT [FMA:62207, FMA:TA] synonym: "parvicellular part of ventral posteromedial nucleus of thalamus" EXACT [FMA:62207] synonym: "ventral posteromedial nucleus of thalamus, parvicellular part" EXACT [FMA:62207] synonym: "ventral posteromedial nucleus, parvocellular part" EXACT [FMA:62207] synonym: "ventral posteromedial thalamic nucleus, parvicellular part" EXACT [FMA:62207] synonym: "ventroposteromedial nucleus of the thalamus, parvicellular part" EXACT [NIF_GrossAnatomy:birnlex_917] xref: ABA:VPMpc xref: FMA:62207 xref: NIF_GrossAnatomy:birnlex_917 is_a: UBERON:0002020 ! gray matter of neuraxis [Term] id: UBERON:0003019 name: oral part of ventral posterolateral nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_918-FMA_62205 synonym: "nucleus lateralis intermedius lateralis" EXACT [NIF_GrossAnatomy:birnlex_918] synonym: "nucleus posteroventralis oralis" EXACT [NIF_GrossAnatomy:birnlex_918] synonym: "nucleus ventralis intermedius (dewulf)" EXACT [NIF_GrossAnatomy:birnlex_918] synonym: "nucleus ventralis intermedius (walker)" EXACT [NIF_GrossAnatomy:birnlex_918] synonym: "nucleus ventralis intermedius thalami" EXACT [NIF_GrossAnatomy:birnlex_918] synonym: "nucleus ventralis posterior lateralis, pars oralis" EXACT [NIF_GrossAnatomy:birnlex_918] synonym: "nucleus ventrointermedius" EXACT [NIF_GrossAnatomy:birnlex_918] synonym: "ventral part of ventral lateral posterior nucleus (jones)" EXACT [] synonym: "ventral posterolateral nucleus, oral part" EXACT [FMA:62205] synonym: "ventral posterolateral thalamic nucleus, oral part" EXACT [FMA:62205] xref: FMA:62205 xref: NIF_GrossAnatomy:birnlex_918 is_a: UBERON:0002020 ! gray matter of neuraxis [Term] id: UBERON:0003020 name: subcallosal area alt_id: UBERON:NIF_GrossAnatomy_birnlex_919-FMA_61890 def: "The subcallosal area (parolfactory area of Broca, area parolfactoria) is a small triangular field on the medial surface of the hemisphere in front of the subcallosal gyrus, from which it is separated by the posterior parolfactory sulcus; it is continuous below with the olfactory trigone, and above and in front with the cingulate gyrus; it is limited anteriorly by the anterior parolfactory sulcus. [WP,unvetted]." [Wikipedia:Subcallosal_area] subset: uberon_slim synonym: "adolfactory area" EXACT [FMA:61890] synonym: "area paraolfactoria" EXACT [FMA:61890, FMA:TA] synonym: "paraolfactory area" EXACT [FMA:61890] synonym: "parolfactory area" EXACT [FMA:61890] xref: FMA:61890 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4d/Gray732.png/200px-Gray732.png xref: NIF_GrossAnatomy:birnlex_919 xref: SCTID:362357004 is_a: UBERON:0002020 ! gray matter of neuraxis [Term] id: UBERON:0003021 name: central lobule alt_id: UBERON:NIF_GrossAnatomy_birnlex_920-FMA_72519 def: "The central lobule is a small square lobule, situated in the anterior cerebellar notch. It overlaps the lingula, from which it is separated by the precentral fissure; laterally, it extends along the upper and anterior part of each hemisphere, where it forms a wing-like prolongation, the ala lobuli centralis. [WP,unvetted]." [Wikipedia:Central_lobule] subset: uberon_slim synonym: "central lobule of cerebellum" EXACT [FMA:72519] synonym: "central lobule of cerebellum [II and III]" EXACT [FMA:72519] synonym: "lobulus centralis cerebelli [ii et iii]" EXACT [FMA:72519, FMA:TA] xref: ABA:CENT xref: FMA:72519 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e4/Gray703.png/200px-Gray703.png xref: NIF_GrossAnatomy:birnlex_920 xref: SCTID:279383007 is_a: UBERON:0004003 ! cerebellum hemisphere lobule relationship: spatially_disjoint_from UBERON:0004077 {source="ABA"} ! cerebellum vermis lobule IV [Term] id: UBERON:0003022 name: lobe parts of cerebral cortex alt_id: UBERON:NIF_GrossAnatomy_birnlex_922-FMA_68603 comment: check w.r.t regional part of cerebreal cortex synonym: "cerebral cortical segment" RELATED [FMA:68603] synonym: "regional organ part of cerebral cortex" RELATED [FMA:68603] synonym: "segment of cerebral cortex" RELATED [NIF_GrossAnatomy:birnlex_922] xref: FMA:68603 xref: NIF_GrossAnatomy:birnlex_922 is_a: UBERON:0002619 ! regional part of cerebral cortex [Term] id: UBERON:0003023 name: pontine tegmentum alt_id: UBERON:NIF_GrossAnatomy_birnlex_923-FMA_71108 def: "The pontine tegmentum is a part of the pons of the brain involved in the initiation of REM sleep. It includes the pedunculopontine nucleus and the laterodorsal tegmental nucleus, among others, and is located near the raphe nucleus and the locus ceruleus. The trapezoid body is part of the pontine tegmentum. [WP,unvetted]." [Wikipedia:Pontine_tegmentum] subset: uberon_slim synonym: "dorsal portion of pons" EXACT [FMA:71108] synonym: "tegmental portion of pons" EXACT [FMA:71108] synonym: "tegmentum of pons" EXACT [FMA:71108] synonym: "tegmentum pontis" EXACT [FMA:71108, FMA:TA] xref: FMA:71108 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9c/Brainstem_Abducens.png/200px-Brainstem_Abducens.png xref: NIF_GrossAnatomy:birnlex_923 xref: SCTID:362401009 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: has_part UBERON:0002047 ! pontine raphe nucleus relationship: has_part UBERON:0002128 ! superior olivary complex relationship: has_part UBERON:0002148 ! locus ceruleus relationship: has_part UBERON:0002149 ! superior salivatory nucleus relationship: part_of UBERON:0000988 ! pons [Term] id: UBERON:0003024 name: principal part of ventral posteromedial nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_927-FMA_62208 synonym: "nucleus ventralis posteromedialis, pars prinicipalis" EXACT [NIF_GrossAnatomy:birnlex_927] xref: FMA:62208 xref: NIF_GrossAnatomy:birnlex_927 is_a: UBERON:0002020 ! gray matter of neuraxis [Term] id: UBERON:0003025 name: brachium of inferior colliculus alt_id: UBERON:NIF_GrossAnatomy_birnlex_929-FMA_71114 def: "The Brachium of inferior colliculus (or inferior brachium) carries auditory afferent fibers from the inferior colliculus of the mesencephalon to the medial geniculate nucleus. [WP,unvetted]." [Wikipedia:Brachium_of_inferior_colliculus] subset: uberon_slim synonym: "brachium of medial geniculate" EXACT [FMA:71114] synonym: "inferior brachium" EXACT [FMA:71114] synonym: "inferior collicular brachium" EXACT [FMA:71114] synonym: "inferior colliculus brachium" EXACT [FMA:71114] synonym: "inferior quadrigeminal brachium" EXACT [FMA:71114] synonym: "peduncle of inferior colliculus" EXACT [FMA:71114] xref: BM:MB-BSC xref: FMA:71114 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/Human_brainstem-thalamus_posterior_view_description.JPG/200px-Human_brainstem-thalamus_posterior_view_description.JPG xref: NIF_GrossAnatomy:birnlex_929 is_a: UBERON:0002316 ! white matter is_a: UBERON:0002917 ! implied link automatically realized ! regional part of inferior colliculus is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter relationship: part_of UBERON:0001946 ! inferior colliculus [Term] id: UBERON:0003026 name: limitans nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_931-FMA_62220 synonym: "limitans thalamic nucleus" EXACT [NIF_GrossAnatomy:birnlex_931] synonym: "nucleus limitans" EXACT [NIF_GrossAnatomy:birnlex_931] synonym: "nucleus limitans opticus (hassler)" EXACT [NIF_GrossAnatomy:birnlex_931] synonym: "nucleus limitans thalami" EXACT [NIF_GrossAnatomy:birnlex_931] xref: BM:Die-Th-L xref: FMA:62220 xref: NIF_GrossAnatomy:birnlex_931 xref: SCTID:369181002 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0003027 name: cingulate cortex alt_id: UBERON:NIF_GrossAnatomy_birnlex_934-MA_0000904 def: "The cingulate cortex is a part of the brain situated in the medial aspect of the cortex. It is extended from the corpus callosum below to the cingulate sulcus above, at least anteriorly. [WP,unvetted]." [Wikipedia:Cingulate_cortex] subset: uberon_slim xref: BM:Tel-Cx-Cg xref: BTO:0003975 xref: EFO:0000343 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/dc/Gray727_cingulate_gyrus.png/200px-Gray727_cingulate_gyrus.png xref: MA:0000904 xref: ncithesaurus:Cingulate_Cortex xref: NIF_GrossAnatomy:birnlex_934 is_a: UBERON:0002619 ! regional part of cerebral cortex is_a: UBERON:0002791 ! regional part of telencephalon is_a: UBERON:0003022 ! lobe parts of cerebral cortex [Term] id: UBERON:0003028 name: commissure of inferior colliculus alt_id: UBERON:NIF_GrossAnatomy_birnlex_935-FMA_71115 def: "A commissure that is part of a inferior colliculus [Obol]." [OBOL:automatic] synonym: "caudal colliculus commissure" EXACT [OBOL:automatic] synonym: "commissure of caudal colliculus" EXACT [OBOL:automatic] synonym: "commissure of inferior colliculi" EXACT [FMA:71115] synonym: "commissure of posterior colliculus" EXACT [OBOL:automatic] synonym: "commissure of posterior corpus quadrigeminum" EXACT [OBOL:automatic] synonym: "inferior collicular commissure" EXACT [FMA:71115] synonym: "inferior colliculus commissure" EXACT [FMA:71115] synonym: "posterior colliculus commissure" EXACT [OBOL:automatic] synonym: "posterior corpus quadrigeminum commissure" EXACT [OBOL:automatic] xref: FMA:71115 xref: NIF_GrossAnatomy:birnlex_935 xref: SCTID:369260005 is_a: UBERON:0001020 ! commissure is_a: UBERON:0002917 ! implied link automatically realized ! regional part of inferior colliculus is_a: UBERON:0005970 ! implied link automatically realized ! brain commissure relationship: part_of UBERON:0001946 intersection_of: UBERON:0001020 ! commissure intersection_of: part_of UBERON:0001946 ! inferior colliculus relationship: part_of UBERON:0001946 ! inferior colliculus [Term] id: UBERON:0003029 name: stria terminalis alt_id: UBERON:NIF_GrossAnatomy_birnlex_937-FMA_61974 def: "The stria terminalis (terminal stria) is a structure in the brain consisting of a band of fibers running along the lateral margin of the ventricular surface of the thalamus. Serving as a major output pathway of the amygdala, the stria terminalis runs from its corticomedial division to the ventral medial nucleus of the hypothalamus. [WP,unvetted]." [Wikipedia:Stria_terminalis] subset: uberon_slim synonym: "semicircular stria" EXACT [FMA:61974] synonym: "terminal stria" EXACT [Wikipedia:Terminal_stria] xref: BM:ST xref: BM:STr xref: BTO:0004616 xref: FMA:61974 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ed/Gray683.png/200px-Gray683.png xref: NIF_GrossAnatomy:birnlex_937 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0003030 name: posterior nucleus of thalamus alt_id: UBERON:NIF_GrossAnatomy_birnlex_939-FMA_62221 subset: vertebrate_core synonym: "nucleus posterior thalami" EXACT [NIF_GrossAnatomy:birnlex_939] xref: BM:Die-Th-Po xref: FMA:62221 xref: ncithesaurus:Posterior_Nucleus_of_the_Thalamus xref: NIF_GrossAnatomy:birnlex_939 xref: SCTID:424901000 xref: ZFA:0000325 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter [Term] id: UBERON:0003031 name: submedial nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_946-FMA_62223 synonym: "gelatinosus thalamic nucleus" EXACT [FMA:62223] synonym: "nucleus submedialis thalami" EXACT [FMA:62223, FMA:TA] synonym: "nucleus submedius thalami" EXACT [NIF_GrossAnatomy:birnlex_946] synonym: "submedial nucleus of thalamus" EXACT [FMA:62223] synonym: "submedial nucleus thalamus" EXACT [NIF_GrossAnatomy:birnlex_946] synonym: "submedial thalamic nucleus" EXACT [NIF_GrossAnatomy:birnlex_946] xref: ABA:SMT xref: EV:0100203 xref: FMA:62223 xref: NIF_GrossAnatomy:birnlex_946 xref: SCTID:279151007 is_a: UBERON:0002308 ! nucleus of brain relationship: spatially_disjoint_from UBERON:0002739 {source="ABA"} ! medial dorsal nucleus [Term] id: UBERON:0003033 name: suprageniculate nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_953-FMA_62222 synonym: "nucleus suprageniculatus" EXACT [NIF_GrossAnatomy:birnlex_953] synonym: "suprageniculate thalamic nucleus" EXACT [FMA:62222] xref: ABA:SGN xref: BM:Die-Th-SG xref: FMA:62222 xref: NIF_GrossAnatomy:birnlex_953 xref: SCTID:369180001 is_a: UBERON:0002308 ! nucleus of brain relationship: spatially_disjoint_from UBERON:0002709 {source="ABA"} ! posterior nuclear complex relationship: spatially_disjoint_from UBERON:0002983 {source="ABA"} ! lateral posterior nucleus [Term] id: UBERON:0003034 name: central dorsal nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_956-FMA_62169 synonym: "nucleus centralis dorsalis thalami" EXACT [NIF_GrossAnatomy:birnlex_956] synonym: "nucleus centralis superior lateralis" EXACT [NIF_GrossAnatomy:birnlex_956] synonym: "nucleus centralis superior lateralis thalami" EXACT [NIF_GrossAnatomy:birnlex_956] synonym: "nucleus circularis" EXACT [NIF_GrossAnatomy:birnlex_956] xref: ABA:NC xref: FMA:62169 xref: NIF_GrossAnatomy:birnlex_956 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter [Term] id: UBERON:0003035 name: regional part of cerebellar white matter alt_id: UBERON:NIF_GrossAnatomy_birnlex_959-FMA_72547 synonym: "segment of cerebellar white matter" EXACT [NIF_GrossAnatomy:birnlex_959] xref: FMA:72547 xref: NIF_GrossAnatomy:birnlex_959 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0003036 name: central lateral nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_961-FMA_62170 synonym: "central lateral nucleus of thalamus" EXACT [FMA:62170] synonym: "central lateral thalamic nucleus" EXACT [FMA:62170] synonym: "centrolateral thalamic nucleus" EXACT [FMA:62170] synonym: "nucleus centralis lateralis of thalamus" EXACT [NIF_GrossAnatomy:birnlex_961] synonym: "nucleus centralis lateralis thalami" EXACT [NIF_GrossAnatomy:birnlex_961] xref: ABA:CL xref: BM:Die-CL xref: EV:0100205 xref: FMA:62170 xref: NIF_GrossAnatomy:birnlex_961 xref: SCTID:279153005 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: spatially_disjoint_from UBERON:0001922 {source="ABA"} ! parafascicular nucleus relationship: spatially_disjoint_from UBERON:0001923 {source="ABA"} ! central medial nucleus relationship: spatially_disjoint_from UBERON:0001924 {source="ABA"} ! paracentral nucleus relationship: spatially_disjoint_from UBERON:0002955 {source="ABA"} ! rhomboidal nucleus [Term] id: UBERON:0003037 name: septum alt_id: UBERON:NIF_GrossAnatomy_birnlex_963-FMA_86461 def: "a wall, dividing a cavity or structure into smaller ones[WP]." [Wikipedia:Septum] comment: general anatomical term in FMA synonym: "septa" EXACT PLURAL [] xref: BM:Tel-Spt xref: FMA:86461 xref: OpenCyc:Mx4rrqot_on_EdaAAAACs0uFOQ is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0002553 ! anatomical cavity [Term] id: UBERON:0003038 name: thoracic spinal cord alt_id: UBERON:NIF_GrossAnatomy_birnlex_966-FMA_71167 def: "The thoracic nerves are the spinal nerves emerging from the thoracic vertebrae. [WP,unvetted]." [Wikipedia:Thoracic_spinal_cord] subset: uberon_slim synonym: "segmenta thoracica medullae spinalis [1-12]" EXACT [FMA:71167, FMA:TA] synonym: "thoracic region of spinal cord" EXACT [FMA:71167] synonym: "thoracic segment of spinal cord" EXACT [FMA:71167] synonym: "thoracic segments of spinal cord [1-12]" EXACT [FMA:71167] synonym: "thoracic spinal cord" EXACT [FMA:71167] xref: FMA:71167 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/68/Gray820.png/200px-Gray820.png xref: ncithesaurus:Thoracic_Spinal_Cord xref: NIF_GrossAnatomy:birnlex_966 xref: SCTID:278750009 is_a: UBERON:0005844 ! implied link automatically realized ! spinal cord segment relationship: adjacent_to UBERON:0005482 intersection_of: UBERON:0005844 ! spinal cord segment intersection_of: adjacent_to UBERON:0005482 ! thoracic region [Term] id: UBERON:0003039 name: anterior commissure anterior part alt_id: UBERON:NIF_GrossAnatomy_birnlex_969-FMA_61963 def: "the horseshoe-shaped tract that connects the two olfactory bulbs." [MP:0010859] synonym: "anterior commissure pars anterior" EXACT [MP:0010859] synonym: "anterior commissure, anterior part" EXACT [FMA:61963] synonym: "anterior part of anterior commissure" EXACT [MP:0008230] synonym: "anterior part of anterior commissure" EXACT [FMA:61963] synonym: "olfactory limb of anterior commissure" EXACT [FMA:61963] synonym: "olfactory part of anterior commissure" EXACT [FMA:61963] synonym: "pars anterior" BROAD [MP:0008230] synonym: "pars anterior commissurae anterioris" EXACT [MP:0008230] xref: FMA:61963 xref: NIF_GrossAnatomy:birnlex_969 is_a: UBERON:0002316 ! white matter is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter disjoint_from: UBERON:0006964 ! pars distalis of adenohypophysis relationship: part_of UBERON:0000935 ! anterior commissure [Term] id: UBERON:0003040 name: central gray substance of midbrain alt_id: UBERON:NIF_GrossAnatomy_birnlex_973-FMA_74510 def: "Periaqueductal gray (PAG; also called the 'central gray') is the gray matter located around the cerebral aqueduct within the midbrain. It plays a role in the descending modulation of pain and in defensive behaviour. The ascending pain and temperature fibers of the spinothalamic tract also send information to the PAG via the spinomesencephalic tract. The spinomesencephalic tract is so-named because the fibers originate in the spine and terminate in the mesencephalon, another name for the midbrain, the part of the brain in which the PAG resides. [WP,unvetted]." [https://sourceforge.net/tracker/?func=detail&aid=3209233&group_id=76834&atid=1205376, Wikipedia:Periaqueductal_gray] comment: TODO - resolve MA - see tracker subset: uberon_slim subset: vertebrate_core synonym: "anulus of cerebral aqueduct" EXACT [FMA:74510] synonym: "central (periaqueductal) gray" EXACT [FMA:74510] synonym: "griseum centrale" EXACT [NIF_GrossAnatomy:birnlex_973] synonym: "periaquectuctal grey" EXACT DUBIOUS [https://sourceforge.net/tracker/?func=detail&aid=3209233&group_id=76834&atid=1205376, MA:0002895] synonym: "periaqueductal gray" EXACT [FMA:74510] synonym: "periaqueductal gray matter" EXACT [FMA:74510] synonym: "periaqueductal gray of tegmentum" EXACT [FMA:74510] synonym: "periaqueductal grey matter" EXACT [EV:0100249] synonym: "periaqueductal grey substance" EXACT [FMA:74510] synonym: "substantia grisea centralis" EXACT [NIF_GrossAnatomy:birnlex_973] xref: ABA:PAG xref: BM:MB-PAG xref: BTO:0002701 xref: EFO:0002470 xref: EV:0100249 xref: FMA:74510 xref: GAID:585 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/da/Cn3nucleus.png/200px-Cn3nucleus.png xref: MA:0000209 xref: MA:0002895 xref: MESH:A.08.186.211.132.659.822.595 xref: NIF_GrossAnatomy:birnlex_973 xref: SCTID:369233003 xref: ZFA:0000518 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: spatially_disjoint_from UBERON:0001715 {source="ABA"} ! oculomotor nuclear complex relationship: spatially_disjoint_from UBERON:0001944 {source="ABA"} ! pretectal region relationship: spatially_disjoint_from UBERON:0001947 {source="ABA"} ! red nucleus relationship: spatially_disjoint_from UBERON:0001966 {source="ABA"} ! substantia nigra pars reticulata relationship: spatially_disjoint_from UBERON:0002141 {source="ABA"} ! parvocellular oculomotor nucleus relationship: spatially_disjoint_from UBERON:0002438 {source="ABA"} ! ventral tegmental nucleus relationship: spatially_disjoint_from UBERON:0002691 {source="ABA"} ! ventral tegmental area relationship: spatially_disjoint_from UBERON:0002696 {source="ABA"} ! cuneiform nucleus relationship: spatially_disjoint_from UBERON:0002722 {source="ABA"} ! trochlear nucleus relationship: spatially_disjoint_from UBERON:0002995 {source="ABA"} ! substantia nigra pars lateralis [Term] id: UBERON:0003041 name: trigeminal nerve fibers alt_id: UBERON:NIF_GrossAnatomy_birnlex_974-FMA_72501 synonym: "central part of trigeminal nerve" EXACT [FMA:72501] synonym: "trigeminal nerve fibers" EXACT [FMA:72501] synonym: "trigeminal nerve tract" EXACT [FMA:72501] xref: FMA:72501 xref: NIF_GrossAnatomy:birnlex_974 is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0003043 name: posterior part of anterior commissure alt_id: UBERON:NIF_GrossAnatomy_birnlex_977-FMA_61964 def: "the major forebrain commissure that connects the two temporal lobes of the cortex." [MP:0010860] synonym: "anterior commissure pars posterior" EXACT [MP:0010860] synonym: "anterior commissure temporal limb" EXACT [MP:0008230] synonym: "anterior commissure, posterior part" EXACT [FMA:61964] synonym: "pars posterior" BROAD [MP:0008229] synonym: "temporal limb of anterior commissure" EXACT [FMA:61964] xref: FMA:61964 xref: NIF_GrossAnatomy:birnlex_977 is_a: UBERON:0002316 ! white matter is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter relationship: part_of UBERON:0000935 ! anterior commissure [Term] id: UBERON:0003044 name: uncinate fasciculus alt_id: UBERON:NIF_GrossAnatomy_birnlex_983-FMA_77636 def: "The uncinate fasciculus is a white matter tract in the human brain that connects parts of the limbic system such as the hippocampus and amygdala in the temporal lobe with frontal ones such as the orbitofrontal cortex. Its function is unknown though it is affected in several psychiatric conditions. It is the last white matter tract to mature in the human brain. [WP,unvetted]." [Wikipedia:Uncinate_fasciculus] subset: uberon_slim synonym: "cerebral uncinate fasciculus" EXACT [FMA:77636] xref: FMA:77636 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d1/Gray751.png/200px-Gray751.png xref: NIF_GrossAnatomy:birnlex_983 xref: SCTID:369083001 is_a: UBERON:0001019 ! fascicle [Term] id: UBERON:0003045 name: dorsal longitudinal fasciculus alt_id: UBERON:NIF_GrossAnatomy_birnlex_986-FMA_83845 def: "The dorsal longitudinal fasciculus (DLF) (not to be confused with the medial longitudinal fasciculus) is a white matter fiber tract located within the brain stem, specifically in the dorsal brainstem tegmentum. The DLF travels through the periaqueductal gray matter. The tract is comprised of a diffuse brainstem pathway located in the periventricular gray matter comprising ascending visceral sensory axons and descending hypothalamic axons. As with all white matter tracts, the DLF consists of myelinated axons carrying information between neurons. The DLF, carries both ascending and descending fibers, conveys visceral motor and sensory signals. [WP,unvetted]." [Wikipedia:Dorsal_longitudinal_fasciculus] subset: uberon_slim subset: vertebrate_core synonym: "bundle of Schutz" EXACT [FMA:83845] synonym: "DLF" RELATED [ZFA:0005266] synonym: "fasciculus longitudinalis posterior" EXACT [FMA:83845, FMA:TA] synonym: "fasciculus of Schutz" EXACT [FMA:83845] synonym: "posterior longitudinal fasciculus" EXACT [FMA:83845] xref: FMA:83845 xref: NIF_GrossAnatomy:birnlex_986 xref: SCTID:369082006 xref: ZFA:0005266 is_a: UBERON:0001019 ! fascicle is_a: UBERON:0005838 ! fasciculus of brain [Term] id: UBERON:0003046 name: ventral acoustic stria alt_id: UBERON:NIF_GrossAnatomy_birnlex_991-FMA_72498 synonym: "anterior acoustic stria" EXACT [FMA:72498] synonym: "stria cochlearis anterior" EXACT [FMA:72498, FMA:TA] xref: FMA:72498 xref: NIF_GrossAnatomy:birnlex_991 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0003047 name: regional part of pretectal region alt_id: UBERON:NIF_GrossAnatomy_birnlex_993-FMA_74519 def: "A regional part of brain that is part of a pretectal region [Obol]." [OBOL:automatic] synonym: "anatomical structure of brain of pretectal area" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of pretectal nuclei" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of pretectal region" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of pretectum" EXACT [OBOL:automatic] synonym: "biological structure of brain of pretectal area" EXACT [OBOL:automatic] synonym: "biological structure of brain of pretectal nuclei" EXACT [OBOL:automatic] synonym: "biological structure of brain of pretectal region" EXACT [OBOL:automatic] synonym: "biological structure of brain of pretectum" EXACT [OBOL:automatic] synonym: "brain anatomical structure of pretectal area" EXACT [OBOL:automatic] synonym: "brain anatomical structure of pretectal nuclei" EXACT [OBOL:automatic] synonym: "brain anatomical structure of pretectal region" EXACT [OBOL:automatic] synonym: "brain anatomical structure of pretectum" EXACT [OBOL:automatic] synonym: "brain biological structure of pretectal area" EXACT [OBOL:automatic] synonym: "brain biological structure of pretectal nuclei" EXACT [OBOL:automatic] synonym: "brain biological structure of pretectal region" EXACT [OBOL:automatic] synonym: "brain biological structure of pretectum" EXACT [OBOL:automatic] synonym: "neuraxis segment of pretectal area" EXACT [OBOL:automatic] synonym: "neuraxis segment of pretectal nuclei" EXACT [OBOL:automatic] synonym: "neuraxis segment of pretectal region" EXACT [OBOL:automatic] synonym: "neuraxis segment of pretectum" EXACT [OBOL:automatic] synonym: "pretectal area anatomical structure of brain" EXACT [OBOL:automatic] synonym: "pretectal area biological structure of brain" EXACT [OBOL:automatic] synonym: "pretectal area brain anatomical structure" EXACT [OBOL:automatic] synonym: "pretectal area brain biological structure" EXACT [OBOL:automatic] synonym: "pretectal area neuraxis segment" EXACT [OBOL:automatic] synonym: "pretectal area regional part of brain" EXACT [OBOL:automatic] synonym: "pretectal area segment of brain" EXACT [OBOL:automatic] synonym: "pretectal nuclei anatomical structure of brain" EXACT [OBOL:automatic] synonym: "pretectal nuclei biological structure of brain" EXACT [OBOL:automatic] synonym: "pretectal nuclei brain anatomical structure" EXACT [OBOL:automatic] synonym: "pretectal nuclei brain biological structure" EXACT [OBOL:automatic] synonym: "pretectal nuclei neuraxis segment" EXACT [OBOL:automatic] synonym: "pretectal nuclei regional part of brain" EXACT [OBOL:automatic] synonym: "pretectal nuclei segment of brain" EXACT [OBOL:automatic] synonym: "pretectal region anatomical structure of brain" EXACT [OBOL:automatic] synonym: "pretectal region biological structure of brain" EXACT [OBOL:automatic] synonym: "pretectal region brain anatomical structure" EXACT [OBOL:automatic] synonym: "pretectal region brain biological structure" EXACT [OBOL:automatic] synonym: "pretectal region neuraxis segment" EXACT [OBOL:automatic] synonym: "pretectal region regional part of brain" EXACT [OBOL:automatic] synonym: "pretectal region segment" EXACT [FMA:74519] synonym: "pretectal region segment of brain" EXACT [OBOL:automatic] synonym: "pretectum anatomical structure of brain" EXACT [OBOL:automatic] synonym: "pretectum biological structure of brain" EXACT [OBOL:automatic] synonym: "pretectum brain anatomical structure" EXACT [OBOL:automatic] synonym: "pretectum brain biological structure" EXACT [OBOL:automatic] synonym: "pretectum neuraxis segment" EXACT [OBOL:automatic] synonym: "pretectum regional part of brain" EXACT [OBOL:automatic] synonym: "pretectum segment of brain" EXACT [OBOL:automatic] synonym: "regional part of brain of pretectal area" EXACT [OBOL:automatic] synonym: "regional part of brain of pretectal nuclei" EXACT [OBOL:automatic] synonym: "regional part of brain of pretectal region" EXACT [OBOL:automatic] synonym: "regional part of brain of pretectum" EXACT [OBOL:automatic] synonym: "segment of brain of pretectal area" EXACT [OBOL:automatic] synonym: "segment of brain of pretectal nuclei" EXACT [OBOL:automatic] synonym: "segment of brain of pretectal region" EXACT [OBOL:automatic] synonym: "segment of brain of pretectum" EXACT [OBOL:automatic] synonym: "segment of pretectal region" EXACT [NIF_GrossAnatomy:birnlex_993] xref: FMA:74519 xref: NIF_GrossAnatomy:birnlex_993 is_a: UBERON:0002966 ! regional part of midbrain tectum relationship: part_of UBERON:0001944 intersection_of: UBERON:0002616 ! regional part of brain intersection_of: part_of UBERON:0001944 ! pretectal region [Term] id: UBERON:0003048 name: regional part of hypothalamus alt_id: UBERON:NIF_GrossAnatomy_birnlex_995-FMA_67706 def: "A regional part of brain that is part of a hypothalamus [Obol]." [OBOL:automatic] synonym: "anatomical structure of brain of hypothalamus" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of preoptico-hypothalamic area" EXACT [OBOL:automatic] synonym: "anatomical structure of brain of preoptico-hypothalamic region" EXACT [OBOL:automatic] synonym: "biological structure of brain of hypothalamus" EXACT [OBOL:automatic] synonym: "biological structure of brain of preoptico-hypothalamic area" EXACT [OBOL:automatic] synonym: "biological structure of brain of preoptico-hypothalamic region" EXACT [OBOL:automatic] synonym: "brain anatomical structure of hypothalamus" EXACT [OBOL:automatic] synonym: "brain anatomical structure of preoptico-hypothalamic area" EXACT [OBOL:automatic] synonym: "brain anatomical structure of preoptico-hypothalamic region" EXACT [OBOL:automatic] synonym: "brain biological structure of hypothalamus" EXACT [OBOL:automatic] synonym: "brain biological structure of preoptico-hypothalamic area" EXACT [OBOL:automatic] synonym: "brain biological structure of preoptico-hypothalamic region" EXACT [OBOL:automatic] synonym: "hypothalamus anatomical structure of brain" EXACT [OBOL:automatic] synonym: "hypothalamus biological structure of brain" EXACT [OBOL:automatic] synonym: "hypothalamus brain anatomical structure" EXACT [OBOL:automatic] synonym: "hypothalamus brain biological structure" EXACT [OBOL:automatic] synonym: "hypothalamus neuraxis segment" EXACT [OBOL:automatic] synonym: "hypothalamus regional part of brain" EXACT [OBOL:automatic] synonym: "hypothalamus segment" EXACT [FMA:67706] synonym: "hypothalamus segment of brain" EXACT [OBOL:automatic] synonym: "neuraxis segment of hypothalamus" EXACT [OBOL:automatic] synonym: "neuraxis segment of preoptico-hypothalamic area" EXACT [OBOL:automatic] synonym: "neuraxis segment of preoptico-hypothalamic region" EXACT [OBOL:automatic] synonym: "preoptico-hypothalamic area anatomical structure of brain" EXACT [OBOL:automatic] synonym: "preoptico-hypothalamic area biological structure of brain" EXACT [OBOL:automatic] synonym: "preoptico-hypothalamic area brain anatomical structure" EXACT [OBOL:automatic] synonym: "preoptico-hypothalamic area brain biological structure" EXACT [OBOL:automatic] synonym: "preoptico-hypothalamic area neuraxis segment" EXACT [OBOL:automatic] synonym: "preoptico-hypothalamic area regional part of brain" EXACT [OBOL:automatic] synonym: "preoptico-hypothalamic area segment of brain" EXACT [OBOL:automatic] synonym: "preoptico-hypothalamic region anatomical structure of brain" EXACT [OBOL:automatic] synonym: "preoptico-hypothalamic region biological structure of brain" EXACT [OBOL:automatic] synonym: "preoptico-hypothalamic region brain anatomical structure" EXACT [OBOL:automatic] synonym: "preoptico-hypothalamic region brain biological structure" EXACT [OBOL:automatic] synonym: "preoptico-hypothalamic region neuraxis segment" EXACT [OBOL:automatic] synonym: "preoptico-hypothalamic region regional part of brain" EXACT [OBOL:automatic] synonym: "preoptico-hypothalamic region segment of brain" EXACT [OBOL:automatic] synonym: "regional part of brain of hypothalamus" EXACT [OBOL:automatic] synonym: "regional part of brain of preoptico-hypothalamic area" EXACT [OBOL:automatic] synonym: "regional part of brain of preoptico-hypothalamic region" EXACT [OBOL:automatic] synonym: "segment of brain of hypothalamus" EXACT [OBOL:automatic] synonym: "segment of brain of preoptico-hypothalamic area" EXACT [OBOL:automatic] synonym: "segment of brain of preoptico-hypothalamic region" EXACT [OBOL:automatic] synonym: "segment of hypothalamus" EXACT [NIF_GrossAnatomy:birnlex_995] xref: FMA:67706 xref: NIF_GrossAnatomy:birnlex_995 xref: SCTID:360454003 is_a: UBERON:0002784 ! regional part of diencephalon relationship: part_of UBERON:0001898 intersection_of: UBERON:0002616 ! regional part of brain intersection_of: part_of UBERON:0001898 ! hypothalamus [Term] id: UBERON:0003049 name: collagen and cuticulin-based cuticle alt_id: UBERON:WBbt_0005755 def: "A rigid external coating which is secreted by the hypodermis, seam and some transitional epithelial cells which covers the outer body, the major openings into the body cavity from the exterior, and two large sensory bristles, the male spicules. The cuticle of the spicules, the hook, and of some portions of the spicule channels is especially rigid and is probably sclerotized. Similar sclerotic features are occasionally noted in the ventral surface of the male tail fan[WBbt]. The main structural components of the nematode cuticle are proteins, highly cross-linked collagens and specialised insoluble proteins known as cuticlins, together with glycoproteins and lipids[WP]." [UBERON:cjm, WA:dh] comment: Note that GO has a superclass protein-based cuticle development // taxonomic restriction may be too strict subset: uberon_slim synonym: "nematode cuticle" RELATED [] xref: WBbt:0005755 is_a: UBERON:0001002 ! cuticle [Term] id: UBERON:0003050 name: olfactory placode alt_id: UBERON:XAO_0000005-ZFA_0000048 def: "A thick plate of cells derived from the neural ectoderm in the head region of the embryo that develops into the olfactory region of the nasal cavity." [Wikipedia:Olfactory_placode, XAO:0000005] comment: Olfactory placodes are the only ectodermal placodes to produce glia, a cell type typically derived from neural crest. subset: uberon_slim subset: vertebrate_core synonym: "nasal placode" RELATED [] synonym: "olfactory placodes" EXACT PLURAL [] xref: AAO:0011076 xref: EFO:0003420 xref: EHDAA:1504 xref: EHDAA2:0001232 xref: EMAPA:16543 xref: OG:0000186 xref: TAO:0000048 xref: XAO:0000005 xref: ZFA:0000048 is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0005085 {source="GO"} ! ectodermal placode is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue is_a: UBERON:0007497 {source="EHDAA2"} ! developing epithelial placode is_a: UBERON:0009955 {source="ZFA"} ! neurogenic placode relationship: develops_from UBERON:0002346 ! neural ectoderm relationship: part_of UBERON:0000076 {source="EHDAA2"} ! external ectoderm relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0003051 name: ear vesicle alt_id: UBERON:0004373 alt_id: UBERON:XAO_0000006-ZFA_0000051 def: "The saccular invagination of ectoderm from which the vertebrate inner ear develops[BTO]. Epithelial sac present beside the fifth rhombomere; forms the semicircular canals dorsally and the otolith organs ventrally, and houses the acoustico-vestibular sensory epithelia (maculae) of hair cells[ZFA]. epithelial sac of invaginated ectoderm formed from the otic placode that gives rise to the structures of the inner ear[MP]" [BTO:0002661, MP:0009806, Wikipedia:Auditory_vesicle, ZFIN:curator] subset: vertebrate_core synonym: "auditory vesicle" RELATED [BTO:0002661] synonym: "otic vesicle" EXACT [] synonym: "otocyst" RELATED [] synonym: "OV" RELATED [] xref: AAO:0011080 xref: BTO:0002661 xref: EHDAA2:0001342 xref: EMAPA:16669 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2d/Gray40.png/200px-Gray40.png xref: ncithesaurus:Otic_Vesicle xref: OG:0001148 xref: SCTID:308792006 xref: XAO:0000006 xref: ZFA:0000051 is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0005085 ! implied link automatically realized ! ectodermal placode is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue is_a: UBERON:0005423 ! developing anatomical structure is_a: UBERON:0007497 ! implied link automatically realized ! developing epithelial placode relationship: develops_into UBERON:0001846 relationship: part_of UBERON:0000924 intersection_of: UBERON:0000483 ! epithelium intersection_of: develops_into UBERON:0001846 ! internal ear intersection_of: part_of UBERON:0000924 ! ectoderm relationship: develops_from UBERON:0009123 {source="NBK53175"} ! otic cup relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0003052 name: midbrain-hindbrain boundary alt_id: UBERON:XAO_0000016-ZFA_0000042 def: "The part of the brain that is the morphological boundary between the midbrain and hindbrain and that is the location of an organizing center which patterns the midbrain and hindbrain primordia of the neural plate." [GO:0021555] comment: editor note: consider adding class for organizer. subset: uberon_slim subset: vertebrate_core synonym: "isthmus" RELATED [] synonym: "isthmus/MHB" RELATED [Geisha:syn] synonym: "MHB" EXACT [] synonym: "midbrain hindbrain boundary" EXACT [] xref: AAO:0011064 xref: EHDAA:5789 xref: EHDAA2:0000757 xref: OG:0000649 xref: TAO:0000042 xref: XAO:0000016 xref: ZFA:0000042 is_a: UBERON:0006800 {source="ZFA"} ! anatomical line relationship: adjacent_to UBERON:0001891 relationship: adjacent_to UBERON:0002028 intersection_of: UBERON:0006800 ! anatomical line intersection_of: adjacent_to UBERON:0001891 ! midbrain intersection_of: adjacent_to UBERON:0002028 ! hindbrain disjoint_from: UBERON:0001609 ! isthmus of thyroid gland relationship: develops_from UBERON:0009615 {source="ZFA"} ! midbrain hindbrain boundary neural plate relationship: part_of UBERON:0000955 {source="ZFA"} ! brain [Term] id: UBERON:0003053 name: ventricular zone alt_id: UBERON:XAO_0000021-ZFA_0001083 def: "There are two primary regions that are thought to give rise to neurons that make up the cerebellum. The first region is the ventricular zone (the roof of the fourth ventricle). This area produces Purkinje cells and deep cerebellar nuclear neurons." [BTO:0003654] comment: This class was created automatically from a combination of ontologies subset: vertebrate_core synonym: "brain ventricular zone" EXACT [MA:0000819] synonym: "ventricular zone of brain" EXACT [] synonym: "VZ" EXACT [] xref: AAO:0011112 xref: BTO:0003654 xref: EFO:0003624 xref: MA:0000819 xref: OG:0001224 xref: TAO:0001083 xref: XAO:0000021 xref: ZFA:0001083 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001890 ! forebrain [Term] id: UBERON:0003054 name: roof plate alt_id: UBERON:XAO_0000022-ZFA_0007058 def: " a single row of glia at the dorsal midline of the developing neural tube. This region provides inductive signals for the specification of neuronal cell types and of the specification of neural crest cells. The cells comprising the roof plate are the precursors to radial glial cells." [GO:0021509, PMID:15378040] comment: TODO - Note that although this is classically defined as being located on the neural tube, in many AOs the roof plate continues post-embryonically after the neural tube has ceased to exist. Consider 'roof plate of neural tube'. TODO - alar plate vs roof plate subset: uberon_slim subset: vertebrate_core synonym: "alar plate" RELATED [Wikipedia:Roof_plate] synonym: "roofplate" EXACT [] xref: AAO:0011097 xref: ZFA:0007058 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0001049 ! neural tube [Term] id: UBERON:0003055 name: periderm alt_id: UBERON:XAO_0000029-ZFA_0001185 def: "A temporary epithelium that derives from the outer layer of the ectdoerm and is shed once the inner layer differentiates to form a true epidermis." [ISBN:9780878932504 "Developmental Biology"] comment: Originally the epidermis is one layer thick, in most vertebrates it soon becomes a two-layered structure. The outer layer gives rise to the periderm. The periderm goes through distinct developmental phases and is ultimately sloughed into the amniotic fluid when differentiation of the underlying epidermal layers is complete. The function of the periderm is not known, but is thought to be related to transport/exchange between the fetus and the amniotic fluid (http://courses.washington.edu/hubio567/devbio/periderm.html) subset: uberon_slim synonym: "epidermis epithelial layer" RELATED [] synonym: "epidermis outer layer" RELATED [] synonym: "EVL" RELATED [ZFA:0001185] synonym: "periderm" RELATED [] xref: EHDAA:6538 xref: EHDAA2:0001846 xref: ncithesaurus:Periderm xref: OG:0001680 xref: XAO:0000029 xref: ZFA:0001185 is_a: UBERON:0000483 ! epithelium is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: develops_from UBERON:0007383 ! enveloping layer of ectoderm [Term] id: UBERON:0003056 name: pre-chordal neural plate alt_id: UBERON:XAO_0000045-ZFA_0007016 def: "The portion of neural plate anterior to the mid-hindbrain junction." [XB:curator] comment: This class was created automatically from a combination of ontologies synonym: "anterior neural plate" RELATED [] xref: AAO:0011084 xref: OG:0001200 xref: XAO:0000045 xref: ZFA:0007016 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue relationship: part_of UBERON:0003075 ! neural plate [Term] id: UBERON:0003057 name: chordal neural plate alt_id: UBERON:XAO_0000046-ZFA_0007017 def: "The portion of neural plate posterior to the mid-hindbrain junction." [XB:curator] comment: This class was created automatically from a combination of ontologies synonym: "posterior neural plate" RELATED [] xref: OG:0001201 xref: XAO:0000046 xref: ZFA:0007017 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0003075 ! neural plate [Term] id: UBERON:0003058 name: hypochord alt_id: UBERON:XAO_0000056-ZFA_0000031 def: "The hypochord is a transient rod-like structure in the embryos of fish, lampreys and amphibians that is located immediately ventral to the notochord. The hypochord may play a role in positioning the dorsal aorta[GO]. near metamorphosis the hypochord fuses to the coccyx, thereby forming the urostyle[AAO]" [AAO:0000733, GO:0055016, ISBN:0815318960, PMID:10648245] comment: Unlike in frogs and axolotl, the hypochord does not appear to be endodermally derived[ZFA] subset: dubious_grouping synonym: "subnotochordal rod" EXACT [GO:0055016, PMID:10648245] xref: AAO:0000733 xref: EFO:0003475 xref: OG:0000081 xref: TAO:0000031 xref: XAO:0000056 xref: ZFA:0000031 is_a: UBERON:0000479 ! tissue is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue relationship: part_of UBERON:0000925 {source="XAO"} ! endoderm [Term] id: UBERON:0003059 name: presomitic mesoderm alt_id: UBERON:XAO_0000057-ZFA_0000279 def: "Unsegmented field of paraxial mesoderm present posterior to the most recently formed somite pair, from which somites will form. Kimmel et al, 1995." [ZFIN:curator] synonym: "PSM" RELATED [] synonym: "segmental plate" EXACT [] synonym: "somitogenic mesoderm" RELATED [] synonym: "unsegmented paraxial mesoderm" EXACT [UBERON:cjm] xref: AAO:0011086 xref: EFO:0001982 xref: OG:0000559 xref: TAO:0000279 xref: XAO:0000057 xref: ZFA:0000279 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: develops_from UBERON:0009618 {source="EDHAA2"} ! trunk paraxial mesenchyme relationship: part_of UBERON:0003077 ! paraxial mesoderm [Term] id: UBERON:0003060 name: pronephric duct alt_id: UBERON:XAO_0000063-ZFA_0000150 def: "In mammals, the pronephric duct is the predecessor of the Wolffian duct[WP]." [Wikipedia:Pronephric_duct] subset: uberon_slim synonym: "archinephric duct" RELATED [OG:0000082] xref: AAO:0011088 xref: ncithesaurus:Pronephric_Duct xref: OG:0000082 xref: SCTID:361406002 xref: TAO:0000150 xref: XAO:0000063 xref: ZFA:0000150 is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0009201 {source="GO"} ! nephric duct relationship: develops_from UBERON:0003064 {source="Wikipedia"} ! intermediate mesoderm relationship: develops_from UBERON:0005721 {source="XAO"} ! pronephric mesoderm relationship: part_of UBERON:0002120 ! pronephros [Term] id: UBERON:0003061 name: blood island alt_id: UBERON:XAO_0000067-ZFA_0000094 def: "Blood islands are structures in the developing embryo which lead to many different parts of the circulatory system. They primarily derive from plexuses formed from angioblasts. Within them, vacuoles appear through liquefaction of the central part of the syncytium into plasma. The lumen of the blood vessels thus formed is probably intracellular. The flattened cells at the periphery form the endothelium. The nucleated red blood corpuscles develop either from small masses of the original angioblast left attached to the inner wall of the lumen or directly from the flat endothelial cells. In either case the syncytial mass thus formed projects from and is attached to the wall of the vessel. Such a mass is known as a blood island and hemoglobin gradually accumulates within it. Later the cells on the surface round up, giving the mass a mulberry-like appearance. Then the red blood cells break loose and are carried away in the plasma. Such free blood cells continue to divide. Blood islands have been seen in the area vasculosa in the omphalomesenteric vein and arteries, and in the dorsal aorta[WP]. Region located on the ventral surface of the developing embryo that is a site of hematopoiesis and that is analogous to the yolk sac blood islands of higher vertebrates[XAO]. Nests of developing blood cells arising late in the segmentation period from the intermediate mass, and located in the anterior-ventral tail, just posterior to the yolk extension[ZFA]." [PMID:9618755, Wikipedia:Blood_island, XAO:0000067, ZFIN:curator] comment: Note EHDAA2 distinguishes 3 types - we opt for the mesoderm one subset: uberon_slim subset: vertebrate_core synonym: "blood island of umbilical vesicle" EXACT [Wikipedia:Blood_island] synonym: "blood islands" EXACT PLURAL [] synonym: "caudal hematopoietic tissue" RELATED [] synonym: "insula sanguinea vesiculae umbilicalis" EXACT [Wikipedia:Blood_island] synonym: "mesoderm blood islands" EXACT [EHDAA2:0003241] synonym: "posterior blood island" RELATED [] synonym: "posterior ICM" RELATED [] synonym: "VBI" RELATED [] synonym: "ventral blood island" RELATED [] synonym: "ventral lateral plate mesoderm" BROAD [] xref: AAO:0011006 xref: EFO:0003489 xref: EHDAA2:0003241 xref: ncithesaurus:Blood_Island xref: OG:0000085 xref: TAO:0000094 xref: TE:E5.11.2.0.0.0.4 xref: XAO:0000067 xref: ZFA:0000094 is_a: UBERON:0005423 ! developing anatomical structure relationship: develops_from UBERON:0003081 ! lateral plate mesoderm relationship: develops_into UBERON:0002390 ! hematopoietic system relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0003062 name: primitive knot alt_id: UBERON:0004018 alt_id: UBERON:XAO_0000072-ZFA_0000071 def: "organizer for gastrulation in vertebrates. The primitive knot starts as a regional knot of cells that forms on the blastodisc immediately anterior to where the outer layer of cells will begin to migrate inwards - an area known as the primitive streak. Posterior to the node is the primitive pit, where the cells of the epiblast (the upper layer of embryonic cells) initially begin to invaginate. This invagination expands posteriorly into the primitive groove as the cells layers continue to move into the space between the embryonic cells and the yolk. This differentiates the embryo into the germ layers - endoderm, mesoderm, and ectoderm. The primitive knot migrates posteriorly as gastrulation proceeds, eventually being absorbed into the tail bud.[WP]. the regional thickening of cells at the rostral tip of the vertebrate primitive streak through which gastrulating cells migrate anteriorally to form tissues in the future head and neck; this region organizes the formation of the three embryonic layers and establishes the longitudinal axis and the polarity of the embryo[MP]." [MP:0004066, Wikipedia:Primitive_knot, Wikipedia:Regional_specification#Dorsal.2Fventral_axis_.26_organizer] comment: TODO check XAO subset: early_development subset: uberon_slim synonym: "DMZ" RELATED [OG:0000598] synonym: "dorsal marginal zone" RELATED [XAO:0000072] synonym: "embryo organizer" EXACT [GAID:1312] synonym: "embryonic organizer" EXACT [GAID:1312] synonym: "embryonic shield" EXACT [http://zfin.org/zf_info/zfbook/stages/gast.html] synonym: "Hensen node" EXACT SENSU [GAID:1312, Wikipedia:Primitive_knot] synonym: "Hensen's node" EXACT SENSU [GAID:1312, Wikipedia:Primitive_knot] synonym: "node" BROAD [EMAPA:16075] synonym: "organizer" EXACT [ZFA:0000071] synonym: "primitive node" EXACT [Wikipedia:Primitive_knot] synonym: "shield" EXACT [ZFA:0000071] synonym: "Spemann Mangold organizer" EXACT SENSU [ZFA:0000071] synonym: "Spemann's organizer" EXACT SENSU [ZFA:0000071] xref: AAO:0000346 xref: BILA:0000053 xref: BTO:0003395 xref: EHDAA:549 xref: EHDAA2:0001272 xref: EMAPA:16075 xref: GAID:1312 xref: MESH:A.16.254.650 xref: ncithesaurus:Primitive_Node xref: OG:0000598 xref: SCTID:361464001 xref: TAO:0000071 xref: XAO:0000072 xref: ZFA:0000071 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0002541 {source="ZFA"} ! germ ring relationship: part_of UBERON:0004341 {source="EHDAA"} ! primitive streak [Term] id: UBERON:0003063 name: prechordal plate alt_id: UBERON:XAO_0000079-ZFA_0000060 def: "a thickening of the endoderm at the cranial end of the primitive streak formed by the involution of Spemann's organizer cells. The prechordal plate and the notochord induce the formation of the neural plate from the overlying ectodermal cells[GO]. Axial hypoblast located anterior to the chorda mesoderm; the polster is its most anterior region[ZFA]. Uniquely thickened portion of the endoderm that is in contact with ectoderm immediately rostral to the cephalic tip of the notochord[WP]." [Wikipedia:Prechordal_plate, ZFIN:curator] comment: todo - check subset: uberon_slim subset: vertebrate_core synonym: "head mesenchyme" BROAD [XAO:0000079] synonym: "head mesoderm" BROAD [XAO:0000079] xref: AAO:0011085 xref: EHDAA:181 xref: EHDAA2:0001493 xref: OG:0000086 xref: TAO:0000060 xref: XAO:0000079 xref: ZFA:0000060 is_a: UBERON:0005423 ! developing anatomical structure relationship: develops_from UBERON:0003068 ! axial mesoderm relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0000925 ! endoderm relationship: part_of UBERON:0004341 ! primitive streak [Term] id: UBERON:0003064 name: intermediate mesoderm alt_id: UBERON:XAO_0000085-ZFA_0001206 def: "The intermediate mesoderm is located between the lateral mesoderm and the paraxial mesoderm. It develops into the kidney and gonads." [GOC:curators, Wikipedia:Intermediate_mesoderm] comment: note that all AOs differ in the relationship between this structure and the mesoderm; in ZFA it is a subclass (and this is implied by the GO definition and GO relationships), in AAO it is part of, and in EHDAA2 it develops from the mesoderm (but in EHDAA2 the naming convention is to use 'paraxial mesenchyme', rather than 'paraxial mesoderm'). subset: uberon_slim subset: vertebrate_core synonym: "IM" RELATED [] synonym: "intermediate plate mesoderm" RELATED [UBERON:cjm] xref: AAO:0010575 xref: EMAPA:16178 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray19_with_color.png/200px-Gray19_with_color.png xref: ncithesaurus:Intermediate_Mesoderm xref: OG:0000087 xref: SCTID:361476001 xref: TAO:0001206 xref: XAO:0000085 xref: ZFA:0001206 is_a: UBERON:0005423 ! developing anatomical structure relationship: adjacent_to UBERON:0003077 ! paraxial mesoderm relationship: adjacent_to UBERON:0003081 ! lateral plate mesoderm relationship: develops_from UBERON:0000926 {source="XAO"} ! mesoderm relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0000926 {source="AAO"} ! mesoderm relationship: part_of UBERON:0005256 {source="EMAPA"} ! trunk mesenchyme [Term] id: UBERON:0003065 name: ciliary marginal zone alt_id: UBERON:XAO_0000086-ZFA_0001289 def: "Region at the periphery of the retina where retinal stem cells are located. After 60 hpf, the CMZ is the source of most retinal growth. Wehman et al, 2005." [ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "circumferential germinal zone" RELATED [] synonym: "CMZ" RELATED [] synonym: "peripheral growth zone" EXACT [ZFA:0001289] xref: AAO:0010342 xref: EFO:0003668 xref: OG:0000088 xref: TAO:0001289 xref: XAO:0000086 xref: ZFA:0001289 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0000966 ! retina [Term] id: UBERON:0003066 name: hyoid arch alt_id: UBERON:XAO_0000098-ZFA_0001276 def: "assists in forming the side and front of the neck." [Wikipedia:Second_branchial_arch] comment: In XAO, develops from visceral pouch 2 subset: uberon_slim subset: vertebrate_core synonym: "2nd arch" RELATED [EHDAA2:0000050] synonym: "2nd pharyngeal arch" EXACT [] synonym: "branchial arch 2" EXACT SENSU [] synonym: "hyoid bars" RELATED [] synonym: "pharyngeal arch 2" EXACT [] synonym: "second branchial arch" EXACT SENSU [] synonym: "second pharyngeal arch" EXACT [] synonym: "second visceral arch" EXACT SENSU [] synonym: "visceral arch 2" EXACT SENSU [] xref: AAO:0010363 xref: EHDAA:611 xref: EHDAA2:0000050 xref: EMAPA:16272 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Gray41.png/200px-Gray41.png xref: ncithesaurus:Second_Pharyngeal_Arch xref: OG:0000297 xref: SCTID:308768003 xref: XAO:0000098 xref: ZFA:0001611 is_a: UBERON:0002539 ! pharyngeal arch [Term] id: UBERON:0003067 name: dorsolateral placode alt_id: UBERON:XAO_0000187-ZFA_0001310 def: "Lateral neurogenic placodes positioned dorsal of the epibranchial placodes." [ZFIN:curator] synonym: "dorsolateral placodes" EXACT PLURAL [ZFA:0001310] xref: OG:0000103 xref: TAO:0001310 xref: XAO:0000187 xref: ZFA:0001310 is_a: UBERON:0009955 {source="NBK53175"} ! neurogenic placode relationship: dorsal_to UBERON:0003078 ! epibranchial placode [Term] id: UBERON:0003068 name: axial mesoderm alt_id: UBERON:XAO_0000205-ZFA_0001204 def: "The axial mesoderm includes the prechordal mesoderm and the chordamesoderm. It gives rise to the prechordal plate and to the notochord." [GO:0048318, Wikipedia:Chordamesoderm] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "chordamesoderm" RELATED [Wikipedia:Chordamesoderm] xref: AAO:0011017 xref: EFO:0003647 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray19_with_color.png/200px-Gray19_with_color.png xref: OG:0000107 xref: TAO:0001204 xref: XAO:0000205 xref: ZFA:0001204 is_a: UBERON:0005423 ! developing anatomical structure relationship: develops_from UBERON:0000926 ! mesoderm relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0000926 ! mesoderm [Term] id: UBERON:0003069 name: otic placode alt_id: UBERON:XAO_0000223-ZFA_0000138 def: "A cranial placode which, once specified, invaginates to form an otic cup, which eventually separates from the surface ectoderm to form the otic vesicle or otocyst, a rounded structure without appar- ent polarity. As the otic placode invaginates into a cup neuroblasts delaminate from the anterior ventral aspect of the otic epithelium to give rise to neurons of the vestibulocochlear (statoacoustic) ganglion of cranial nerve VIII" [NBK:NBK53175] comment: With the exception of the pigment cells of the stria vascularis and the secretory epithelium of the cochlea, which are of neural crest origin, all compo- nents of the inner ear derive from the otic placode. In most species the thickening of the ectoderm into a placode occurs in a region adjacent to rhombomere 5 (reviewed in Ohyama et al., 2007), while in amphibians the otic placode is centered onto rhombomere 4 (Ruiz i Altaba and Jessell, 1991).[NBK53175] subset: uberon_slim subset: vertebrate_core synonym: "auditory placode" RELATED [] synonym: "ear placode" RELATED [] synonym: "ear/otic placode" RELATED [] xref: AAO:0011079 xref: EFO:0003429 xref: EHDAA:506 xref: EHDAA2:0001339 xref: EMAPA:16195 xref: ncithesaurus:Otic_Placodes xref: OG:0000235 xref: TAO:0000138 xref: XAO:0000223 xref: ZFA:0000138 is_a: UBERON:0003067 ! dorsolateral placode is_a: UBERON:0005085 {source="GO"} ! ectodermal placode relationship: part_of UBERON:0001690 ! ear [Term] id: UBERON:0003070 name: trigeminal placode alt_id: UBERON:XAO_0000225-ZFA_0000162 def: "The ectodermal rudiment of the trigeminal ganglion." [OG:0000109] comment: This class was created automatically from a combination of ontologies xref: EFO:0003433 xref: OG:0000109 xref: TAO:0000162 xref: XAO:0000225 xref: ZFA:0000162 is_a: UBERON:0003067 ! dorsolateral placode relationship: develops_from UBERON:0003067 ! dorsolateral placode [Term] id: UBERON:0003071 name: eye primordium alt_id: UBERON:0005060 alt_id: UBERON:XAO_0000227-ZFA_0000570 def: "Portion of tissue that is part of the anterior neural keel and will form the optic vesicle[ZFA]. A paired ectodermal placode that becomes invaginated to form the embryonic lens vesicles." [GO:0046619, ZFA:0000570] comment: TODO - check that GO's optic placode is the same as ZFA's eye primordium; we may want to have separate term for ocular primordium precursor. synonym: "eye anlage" RELATED [] synonym: "eye field" RELATED [] synonym: "eye placode" EXACT [OBOL:automatic] synonym: "occular primordium" EXACT [] synonym: "ocular primordium" EXACT [] synonym: "optic field" RELATED [] synonym: "optic placode" EXACT [GO:0046619] synonym: "optic primordium" EXACT [] xref: AAO:0011038 xref: EFO:0003541 xref: TAO:0000570 xref: XAO:0000227 xref: ZFA:0000570 is_a: UBERON:0005085 ! ectodermal placode relationship: develops_into UBERON:0000019 intersection_of: UBERON:0001048 ! primordium intersection_of: develops_into UBERON:0000019 ! camera-type eye relationship: develops_from UBERON:0003056 ! pre-chordal neural plate relationship: part_of UBERON:0003075 ! neural plate [Term] id: UBERON:0003072 name: optic cup alt_id: UBERON:XAO_0000228-ZFA_0001202 def: "Multi-tissue structure that is comprised of neural and non-neural epithelial layers which will form the retina and retinal pigmented epithelium of the mature eye[ZFA]. double walled structured formed by expansion and invagination of the distal end of the optic vesicle that develops into the pigmented and sensory layers of the retina while the mouth of the optic cup eventually forms the pupil of the eye[MP]." [MP:0004269, ZFA:0001202] comment: This class was created automatically from a combination of ontologies subset: vertebrate_core synonym: "eye cup" RELATED [] xref: EHDAA:2912 xref: EHDAA2:0001303 xref: EMAPA:16674 xref: ncithesaurus:Optic_Cup xref: OG:0000167 xref: SCTID:308789007 xref: ZFA:0001202 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: develops_from UBERON:0004128 ! optic vesicle relationship: develops_into UBERON:0000019 ! camera-type eye relationship: induced_by UBERON:0003073 ! lens placode [Term] id: UBERON:0003073 name: lens placode alt_id: UBERON:XAO_0000240-ZFA_0000122 def: "A thickened portion of ectoderm which serves as the precursor to the lens. SOX2 and Pou2f1 are involved in its development[WP]." [Wikipedia:Lens_placode, ZFIN:curator] comment: Classical transplantation experiments using amphibian embryos suggested that the optic vesicle is the source of lens-inducing signals sufficient to generate lens tissues in competent ectoderm (reviewed in Grainger et al., 1996). More recent findings suggest a multistep model for lens induction. There is now good evidence that lens specification occurs at the neurula stage, before the optic vesicle contact the surface ectoderm, and that neural crest cell migration in the frontonasal region is required to restrict the position of the lens placode (Bailey et al., 2006)[NBK53175] subset: uberon_slim subset: vertebrate_core xref: AAO:0011055 xref: EFO:0003494 xref: EHDAA:2908 xref: EHDAA2:0000982 xref: EMAPA:16672 xref: ncithesaurus:Lens_Placodes xref: OG:0000166 xref: TAO:0000122 xref: XAO:0000240 xref: ZFA:0000122 is_a: UBERON:0002546 {note="non-neurogenic", source="NBK53175"} ! cranial placode relationship: develops_into UBERON:0000965 intersection_of: UBERON:0001048 ! primordium intersection_of: develops_into UBERON:0000965 ! lens relationship: induced_by UBERON:0004128 ! optic vesicle relationship: part_of UBERON:0000076 ! external ectoderm [Term] id: UBERON:0003074 name: mesonephric duct alt_id: UBERON:XAO_0000242-ZFA_0000546 def: "Paired organ that connects the primitive kidney Wolffian body (or mesonephros) to the cloaca and serves as the anlage for certain male reproductive organs. the Wolffian duct is what remains of the pronephric duct after the atrophy of the pronephros[WP]. In Zebrafish: Duct of the adult kidney (mesonephros), present bilaterally ventral to the somites and leading to the cloacal chamber[ZFA]." [Wikipedia:Mesonephric_duct, ZFIN:curator] comment: TODO - mesonephric portion of the nephric duct subset: uberon_slim subset: vertebrate_core synonym: "archinephric duct" RELATED [OG:0000082, Wikipedia:Wolffian_duct] synonym: "Leydig's duct" RELATED [Wikipedia:Wolffian_duct] synonym: "renal duct" RELATED [] synonym: "Wolffian duct" EXACT [GOC:yaf, Wikipedia:Wolffian_duct, ZFA:0000546] xref: AAO:0000637 xref: EHDAA:1590 xref: EHDAA2:0001243 xref: EMAPA:16577 xref: GAID:1315 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6d/Gray1109.png/200px-Gray1109.png xref: MESH:A.16.254.940 xref: ncithesaurus:Mesonephric_Duct xref: OG:0000082 xref: SCTID:308800003 xref: TAO:0000546 xref: XAO:0000242 xref: ZFA:0000546 is_a: UBERON:0000083 ! implied link automatically realized ! mesonephric tubule is_a: UBERON:0009201 {source="GO"} ! nephric duct relationship: develops_from UBERON:0003060 ! pronephric duct relationship: part_of UBERON:0000080 ! mesonephros [Term] id: UBERON:0003075 name: neural plate alt_id: UBERON:XAO_0000249-ZFA_0000132 def: "A region of embryonic ectodermal cells that lie directly above the notochord. During neurulation, they change shape and produce an infolding of the neural plate (the neural fold) that then seals to form the neural tube[XAO]. The earliest recognizable dorsal ectodermal primordium of the central nervous system present near the end of gastrulation before infolding to form the neural keel; consists of a thickened pseudostratified epithelium[ZFA]" [ISBN:0815318960, OMD:neural+plate, Wikipedia:Neural_plate, ZFIN:curator] subset: uberon_slim subset: vertebrate_core synonym: "presumptive central nervous system" RELATED [] xref: AAO:0011072 xref: BTO:0001765 xref: EHDAA:346 xref: EHDAA:902 xref: EHDAA2:0001252 xref: EMAPA:16095 xref: EMAPA:16527 xref: EMAPA:16756 xref: ncithesaurus:Neural_Plate xref: OG:0000068 xref: TAO:0000132 xref: XAO:0000249 xref: ZFA:0000132 is_a: UBERON:0000483 {source="GO"} ! epithelium is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue is_a: UBERON:0005423 ! developing anatomical structure relationship: develops_from UBERON:0002346 ! neural ectoderm relationship: develops_from UBERON:0007284 {source="ZFA"} ! presumptive neural plate relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0002346 {source="XAO"} ! neural ectoderm [Term] id: UBERON:0003076 name: posterior neural tube alt_id: UBERON:XAO_0000250-ZFA_0007037 comment: This class was created automatically from a combination of ontologies xref: AAO:0011082 xref: OG:0001383 xref: TAO:0007037 xref: XAO:0000250 xref: ZFA:0007037 is_a: UBERON:0005423 ! developing anatomical structure relationship: develops_from UBERON:0003057 ! chordal neural plate relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0001049 ! neural tube [Term] id: UBERON:0003077 name: paraxial mesoderm alt_id: UBERON:XAO_0000259-ZFA_0000255 def: "The paraxial mesoderm is the mesoderm located bilaterally adjacent to the notochord and neural tube[GO]" [GO:0048339, Wikipedia:Paraxial_mesoderm] comment: note that all AOs differ in the relationship between this structure and the mesoderm; in ZFA it is a subclass (and this is implied by the GO definition and GO relationships), in AAO it is part of, and in EHDAA2 it develops from the mesoderm (but in EHDAA2 the naming convention is to use 'paraxial mesenchyme', rather than 'paraxial mesoderm'). subset: uberon_slim subset: vertebrate_core synonym: "paraxial mesenchyme" RELATED [] synonym: "somitic mesoderm" EXACT [ISBN:9780878932504 "Developmental Biology"] xref: AAO:0010568 xref: EFO:0003515 xref: EMAPA:16183 xref: EMAPA:16751 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray19_with_color.png/200px-Gray19_with_color.png xref: ncithesaurus:Paraxial_Mesoderm xref: OG:0000114 xref: SCTID:361475002 xref: TAO:0000255 xref: XAO:0000259 xref: ZFA:0000255 is_a: UBERON:0005256 {source="ZFA"} ! trunk mesenchyme is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue relationship: develops_from UBERON:0007285 {source="ZFA"} ! presumptive paraxial mesoderm relationship: part_of UBERON:0000926 {source="XAO"} ! mesoderm [Term] id: UBERON:0003078 name: epibranchial placode alt_id: UBERON:XAO_0000284-ZFA_0001294 def: "Neurogenic placodes that generate neurons of the distal facial, glossopharyngeal and vagal ganglia, which convey sensation from the viscera, including pharyngeal endoderm structures, to the CNS. The epibranchial placodes are positioned ventrally to the ear/otic placode and dorsally to the posterior pharyngeal pouches/clefts" [ZFIN:ZDB-PUB-050804-2, ZFIN:ZDB-PUB-070122-31] comment: Epibranchial placodes-derived neu- rons innervate internal organs to transmit information such as heart rate, blood pressure, and visceral distension from the periphery to the central nervous system (Baker and Bronner-Fraser, 2001). From rostral to caudal the epibranchial placodes comprise the geniculate, petrosal, and nodose placodes, each associated in sequence with the first, second and third branchial clefts. Each placode contributes sensory neurons to cranial nerves VII (facial nerve), IX (glossopharyngeal nerve), and X (vagal nerve), respectively[NBK53175] synonym: "epibranchial placodes" EXACT PLURAL [ZFA:0001294] xref: AAO:0011036 xref: EFO:0003455 xref: OG:0000117 xref: TAO:0001294 xref: XAO:0000284 xref: ZFA:0001294 is_a: UBERON:0009955 {source="NBK53175"} ! neurogenic placode relationship: develops_from UBERON:0003067 ! dorsolateral placode relationship: part_of UBERON:0000010 ! peripheral nervous system relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0003079 name: floor plate alt_id: UBERON:XAO_0000306-ZFA_0000022 def: " A ventral region of glial cells in the neural tube that provides inductive signals for the specification of neuronal cell types. The floor plate is evident at the ventral midline by the neural fold stage[GO]. A structure integral to the developing nervous system of vertebrate organisms. Located on the ventral midline of the embryonic neural tube, the floor plate is a specialized glial structure that spans the anteroposterior axis from the midbrain to the tail regions. It has been shown that the floor plate is conserved among vertebrates with homologous structures in invertebrates such as the fruit fly Drosophila and the nematode C. elegans. Functionally, the structure serves as an organizer to ventralize tissues in the embryo as well as to guide neuronal positioning and differentiation along the dorsoventral axis of the neural tube[WP]." [GO:0021508, PMID:15738958, Wikipedia:Floor_plate] comment: Note that although this is classically defined as being located on the neural tube, in many AOs the floor plate continues post-embryonically after the neural tube has ceased to exist. Consider 'floor plate of neural tube'. subset: uberon_slim subset: vertebrate_core synonym: "bodenplatte" RELATED [BTO:0001720] synonym: "flexural organ" RELATED [] synonym: "floorplate" EXACT [] synonym: "ventral plate" RELATED [BTO:0001720] xref: AAO:0011041 xref: BTO:0001720 xref: EFO:0003473 xref: EHDAA2:0000545 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/89/Gray642.png/200px-Gray642.png xref: TAO:0000022 xref: ZFA:0000022 is_a: UBERON:0005423 ! developing anatomical structure relationship: develops_from UBERON:0002328 {source="Wikipedia"} ! notochord relationship: develops_from UBERON:0007286 {source="ZFA"} ! presumptive floor plate relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0003080 name: anterior neural tube alt_id: UBERON:XAO_0000307-ZFA_0007038 comment: editor note: TODO - add grouping class for the anterior end of the neural tube at all stages xref: AAO:0011012 xref: OG:0001384 xref: TAO:0007038 xref: XAO:0000307 xref: ZFA:0007038 is_a: UBERON:0005423 ! developing anatomical structure relationship: develops_from UBERON:0003056 ! pre-chordal neural plate relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0001049 ! neural tube [Term] id: UBERON:0003081 name: lateral plate mesoderm alt_id: UBERON:XAO_0000311-ZFA_0000121 def: "Portion of the middle of the three primary germ layers of the embryo that resides on the periphery of the embryo, is continuous with the extra-embryonic mesoderm, splits into two layers enclosing the intra-embryonic coelom, and gives rise to body wall structures[MP]." [MP:0010117, Wikipedia:Lateral_plate_mesoderm] subset: uberon_slim synonym: "lateral mesoderm" EXACT [GO:0048368] synonym: "lateral plate" RELATED [] xref: AAO:0010574 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray19_with_color.png/200px-Gray19_with_color.png xref: ncithesaurus:Lateral_Mesoderm xref: OG:0000118 xref: SCTID:361477005 xref: TAO:0000121 xref: TAO:0001065 xref: XAO:0000311 xref: ZFA:0000121 is_a: UBERON:0005423 ! developing anatomical structure relationship: develops_from UBERON:0000926 ! mesoderm relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0000926 ! mesoderm relationship: surrounds UBERON:0003887 ! intraembryonic coelom [Term] id: UBERON:0003082 name: myotome alt_id: UBERON:XAO_0000315-ZFA_0001056 def: "A group of tissues formed from somites that develop into the body wall muscle[WP]. Somitic compartment that is a precursor of muscle. mesoderm that is derived from the somite that is fated to become the musculature[MP]. Portion of the somites giving rise to body wall muscle masses[ZFA]" [MP:0003939, PMID:17313522, Wikipedia:Myotome, ZFIN:curator] comment: The term "myotome" is also used to describe the muscles served by a single nerve root subset: uberon_slim subset: vertebrate_core synonym: "myomeres" RELATED [] synonym: "myotomes" RELATED [] xref: AAO:0011067 xref: BTO:0000742 xref: EHDAA:1721 xref: EHDAA:1727 xref: EHDAA:1733 xref: EHDAA:1739 xref: EHDAA2:0003431 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/96/Gray65.png/200px-Gray65.png xref: OG:0001244 xref: SCTID:344535001 xref: TAO:0001056 xref: XAO:0000315 xref: ZFA:0001056 is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue relationship: develops_from UBERON:0002329 {source="ZFA"} ! somite relationship: part_of UBERON:0000926 ! mesoderm relationship: part_of UBERON:0004290 ! dermomyotome [Term] id: UBERON:0003083 name: trunk neural crest alt_id: UBERON:XAO_0000319-ZFA_0001024 def: "Trunk portion of the neural crest. The trunk neural crest lies between the vagal and sacral neural crest and gives rise to two groups of cells. One group migrates dorsolateral and populates the skin, forming pigment cells and the other migrates ventrolateral through the anterior sclerotome to become the epinephrine-producing cells of the adrenal gland and the neurons of the sympathetic nervous system. Some cells remain in the sclerotome to form the dorsal root ganglia [Wikipedia]." [ISBN:0815318960, Wikipedia:Trunk_neural_crest] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "trunk crest" RELATED [] xref: AAO:0010582 xref: EFO:0003605 xref: OG:0000062 xref: TAO:0001024 xref: XAO:0000319 xref: ZFA:0001024 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue relationship: part_of UBERON:0002342 ! neural crest [Term] id: UBERON:0003084 name: heart primordium alt_id: UBERON:XAO_0000336-ZFA_0000028 def: "Bilateral groups of cells consisting of three rows: one row of endocardial precursors medially and two rows of myocardical precursors laterally. The two populations fuse at the midline to form the heart rudiment or cone." [ZFIN:curator] comment: editor note: should probably be fused with heart rudiment. subset: uberon_slim synonym: "fused heart primordium" RELATED [] xref: AAO:0011044 xref: BTO:0001887 xref: ncithesaurus:Primordium_of_the_Heart xref: XAO:0000336 xref: ZFA:0000028 is_a: UBERON:0001048 {source="Obol"} ! primordium relationship: develops_from UBERON:0003081 {source="ZFA"} ! lateral plate mesoderm relationship: develops_from UBERON:0004140 ! heart field relationship: develops_from UBERON:0007005 {source="XAO"} ! cardiac mesoderm relationship: part_of UBERON:0004535 {source="ZFA"} ! cardiovascular system [Term] id: UBERON:0003085 name: ventral aorta alt_id: UBERON:XAO_0000338-ZFA_0000604 def: "The ventral aorta is a blood vessel in a single-pass circulatory system that carries de-oxygenated blood from the heart to the gills. In a single-pass circulatory system blood passes once through the heart to supply the body once[GO]. The artery in vertebrate embryos that carries blood from the ventricle of the heart to the aortic arches. In adult fish it branches into afferent branchial arteries supplying the gills. In adult tetrapods it is represented by the ascending part of the aorta[BTO]." [BTO:0004674, GO:0035908] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: AAO:0010412 xref: BTO:0004674 xref: OG:0000121 xref: TAO:0000604 xref: XAO:0000338 xref: ZFA:0000604 is_a: UBERON:0000947 ! aorta relationship: homologous_to UBERON:0001496 {source="PMID:2297080", source="Wikipedia"} ! ascending aorta [Term] id: UBERON:0003086 name: caudal artery alt_id: UBERON:XAO_0000364-ZFA_0000011 def: "Extension of the dorsal aorta in the tail. Kimmel et al, 1995." [Wikipedia:Caudal_artery, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "CA" RELATED [] xref: AAO:0011023 xref: EFO:0003472 xref: OG:0000123 xref: TAO:0000011 xref: XAO:0000364 xref: ZFA:0000011 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0003087 name: anterior cardinal vein alt_id: UBERON:XAO_0000383-ZFA_0000423 def: "the two paired veins draining the cephalic part of the body." [MP:0004784] comment: This class was created automatically from a combination of ontologies subset: vertebrate_core synonym: "ACV" RELATED [] synonym: "rostral cardinal vein" EXACT [ZFA:0000423] synonym: "rostral cardinal veins" RELATED [] xref: AAO:0011011 xref: BTO:0004387 xref: EHDAA:1312 xref: EMAPA:16355 xref: ncithesaurus:Anterior_Cardinal_Vein xref: OG:0000113 xref: SCTID:308780006 xref: TAO:0000423 xref: XAO:0000383 xref: ZFA:0000423 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0003088 name: caudal vein alt_id: UBERON:XAO_0000390-ZFA_0000180 def: "Vein in the tail returning blood from the trunk and tail to the heart, leads directly into the posterial cardinal vein in the posterior trunk. Kimmel et al, 1995." [ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "CV" RELATED [] xref: AAO:0011025 xref: EFO:0003616 xref: OG:0000126 xref: TAO:0000180 xref: XAO:0000390 xref: ZFA:0000180 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0003089 name: sclerotome alt_id: UBERON:XAO_0000397-ZFA_0001080 def: "Ventral somitic compartment that is a precursor of the axial skeleton[XAO]. Sclerotomes eventually differentiate into the vertebrae and most of the skull. The caudal (posterior) half of one sclerotome fuses with the rostral (anterior) half of the adjacent one to form each vertebra. From their initial location within the somite, the sclerotome cells migrate medially towards the notochord. These cells meet the sclerotome cells from the other side to form the vertebral body. From this vertebral body, sclerotome cells move dorsally and surround the developing spinal cord, forming the vertebral arch[WP]." [Wikipedia:Sclerotome, XB:curator] subset: uberon_slim subset: vertebrate_core xref: AAO:0010571 xref: EHDAA2:0003439 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/96/Gray65.png/200px-Gray65.png xref: ncithesaurus:Sclerotome xref: OG:0000680 xref: TAO:0001080 xref: XAO:0000397 xref: ZFA:0001080 is_a: UBERON:0000479 {source="ZFA"} ! tissue is_a: UBERON:0002050 {source="XAO"} ! embryonic structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue relationship: develops_from UBERON:0002329 {source="ZFA"} ! somite relationship: part_of UBERON:0002329 ! somite [Term] id: UBERON:0003090 name: supraorbital lateral line alt_id: UBERON:XAO_0000442-ZFA_0000443 def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "supraorbital line" EXACT [ZFA:0000443] xref: AAO:0011103 xref: OG:0000128 xref: TAO:0000443 xref: XAO:0000442 xref: ZFA:0000443 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0002540 ! lateral line system [Term] id: UBERON:0003091 name: thyroid primordium alt_id: UBERON:XAO_0000444-ZFA_0001081 def: "The initial thyroid precursor, the thyroid primordium, starts as a simple midline thickening and develops to form the thyroid diverticulum. This structure is initially hollow, although it later solidifies and becomes bilobed. The 2 lobes are located on either side of the midline and are connected via an isthmus." [http://emedicine.medscape.com/article/845125-overview] comment: In all vertebrates the thyroid arises from the ventral aspect of the second pouch[PMID:16313389]. Note that we follow EHDAA2 in dividing this into endoderm and mesenchyme. In this ontology we place the broad developmental relationship at this level, and include specific relationships to the pharyngeal endoderm at the level of the endoderm subset: vertebrate_core xref: AAO:0011106 xref: BTO:0004709 xref: EHDAA:952 xref: EHDAA2:0002033 xref: EMAPA:16361 xref: EMAPA:16558 xref: ncithesaurus:Thyroid_Primordium xref: TAO:0001081 xref: XAO:0000444 xref: ZFA:0001081 is_a: UBERON:0000479 {source="ZFA"} ! tissue is_a: UBERON:0001048 ! primordium is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: develops_from UBERON:0007123 {source="PMID:16313389"} ! pharyngeal pouch 2 relationship: part_of UBERON:0000949 {source="ZFA"} ! endocrine system [Term] id: UBERON:0003092 name: ultimobranchial body alt_id: UBERON:XAO_0000452-ZFA_0001448 def: "Pharyngeal pouch derivative, usually paired cell masses located in the neck region[Kardong]. The ultimobranchial body or gland is a small organ found in the neck region of many animals. In humans, the ultimobranchial body is an embryological structure that gives rise to the calcitonin-producing cells—also called parafollicular cells or clear cells—of the thyroid gland. In humans, this body is a derivative of the ventral recess of the fourth pharyngeal pouch (or fifth) [WP,unvetted]. The ultimobranchial bodies of lower vertebrates contain large amounts of calcitonin. In mammals the bodies fuse with the thyroid gland and are thought to develop into the parafollicular cells. (Stedman, 25th ed)" [ISBN10:0073040584, MESH:A.13.939, Wikipedia:Ultimobranchial_body] comment: Developmental origins vary across species. PMID:16313389 says: the most posterior pouch generates the ultimobranchial bodies in most vertebrate classes, but mammals do not contain this structure // The neural crest is the source of ultimobranchial cells[Kardong] subset: uberon_slim subset: vertebrate_core synonym: "postbranchial body" RELATED [Wikipedia:Ultimobranchial_body] synonym: "ultimobranchial" RELATED [Wikipedia:Ultimobranchial_body] synonym: "ultimobranchial bodies" RELATED [Wikipedia:Ultimobranchial_body] synonym: "ultimobranchial gland" RELATED [Wikipedia:Ultimobranchial_body] synonym: "ultimopharyngeal gland" RELATED [Wikipedia:Ultimobranchial_body] xref: AAO:0010547 xref: EHDAA:2987 xref: EHDAA:9139 xref: EHDAA2:0002103 xref: GAID:1246 xref: MESH:A.13.939 xref: OG:0001185 xref: TAO:0001448 xref: XAO:0000452 xref: ZFA:0001448 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: develops_from UBERON:0003117 {source="XAO"} ! pharyngeal arch 6 relationship: develops_from UBERON:0007125 {source="Wikipedia"} ! pharyngeal pouch 4 relationship: develops_from UBERON:0007126 {source="Wikipedia"} ! pharyngeal pouch 5 relationship: part_of UBERON:0000949 ! endocrine system [Term] id: UBERON:0003093 name: occipital lateral line alt_id: UBERON:XAO_0000458-ZFA_0000400 def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "supratemporal lateral line" RELATED [] xref: AAO:0011075 xref: OG:0000131 xref: TAO:0000400 xref: XAO:0000458 xref: ZFA:0000400 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0002540 ! lateral line system [Term] id: UBERON:0003094 name: infraorbital lateral line alt_id: UBERON:XAO_0000459-ZFA_0000524 def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "infraorbital line" EXACT [ZFA:0000524] xref: AAO:0011053 xref: OG:0000132 xref: TAO:0000524 xref: XAO:0000459 xref: ZFA:0000524 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0002540 ! lateral line system [Term] id: UBERON:0003095 name: dorsal lateral line alt_id: UBERON:XAO_0000462-ZFA_0005112 def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: AAO:0011030 xref: TAO:0005112 xref: XAO:0000462 xref: ZFA:0005112 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0002540 ! lateral line system [Term] id: UBERON:0003096 name: middle lateral line alt_id: UBERON:XAO_0000463-ZFA_0000344 def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: OG:0000133 xref: TAO:0000344 xref: XAO:0000463 xref: ZFA:0000344 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0002540 ! lateral line system [Term] id: UBERON:0003097 name: dorsal fin alt_id: UBERON:XAO_0000469-ZFA_0001173 def: "." [Wikipedia:Dorsal_fin] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: AAO:0010378 xref: BTO:0004650 xref: OpenCyc:Mx4rvVjbzZwpEbGdrcN5Y29ycA xref: TAO:0001173 xref: XAO:0000469 xref: ZFA:0001173 is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0008897 ! fin relationship: develops_from UBERON:0003083 ! trunk neural crest [Term] id: UBERON:0003098 name: optic stalk alt_id: UBERON:XAO_0000475-ZFA_0000137 def: "The optic vesicles project toward the sides of the head, and the peripheral part of each expands to form a hollow bulb, while the proximal part remains narrow and constitutes the optic stalk. [WP,unvetted]." [Wikipedia:Optic_stalk] subset: uberon_slim subset: vertebrate_core xref: AAO:0011077 xref: EHDAA:3816 xref: EHDAA2:0001318 xref: EMAPA:16678 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2f/Gray864.png/200px-Gray864.png xref: ncithesaurus:Optic_Stalk xref: OG:0000223 xref: SCTID:308788004 xref: TAO:0000137 xref: XAO:0000475 xref: ZFA:0000137 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: develops_from UBERON:0003072 ! optic cup relationship: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0003099 name: cranial neural crest alt_id: UBERON:XAO_0001001-ZFA_0001194 def: "The cranial neural crest arises in the anterior and populates the face and the pharyngeal arches giving rise to bones, cartilage, nerves and connective tissue [Wikipedia]." [Wikipedia:Cranial_neural_crest, ZFA:0001194, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "cephalic neural crest" RELATED [EMAPA:16091] synonym: "head crest" RELATED [] synonym: "head neural crest" RELATED [] xref: AAO:0010580 xref: EFO:0003645 xref: EMAPA:16091 xref: OG:0000063 xref: TAO:0001194 xref: XAO:0001001 xref: ZFA:0001194 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue relationship: part_of UBERON:0002342 ! neural crest [Term] id: UBERON:0003100 name: female organism alt_id: UBERON:XAO_0003005-ZFA_0000303 def: "Gonochoristic organism that can produce female gametes." [CARO:0000028] subset: vertebrate_core synonym: "female" RELATED [TAO:0000303] synonym: "female human body" NARROW SENSU [FMA:67812] xref: AAO:0010030 xref: BILA:0000028 xref: CARO:0000028 xref: FBbt:00007011 xref: FMA:67812 xref: HAO:0000028 xref: TAO:0000303 xref: TGMA:0001839 xref: XAO:0003005 xref: ZFA:0000303 is_a: UBERON:0000468 ! multi-cellular organism disjoint_from: UBERON:0003101 ! male organism [Term] id: UBERON:0003101 name: male organism alt_id: UBERON:XAO_0003006-ZFA_0000242 def: "Gonochoristic organism that can produce male gametes." [CARO:0000027] subset: vertebrate_core synonym: "male" RELATED [TAO:0000242] synonym: "male human body" NARROW SENSU [FMA:67811] xref: AAO:0010033 xref: BILA:0000027 xref: CARO:0000027 xref: FBbt:00007004 xref: FMA:67811 xref: HAO:0000027 xref: TAO:0000242 xref: TGMA:0001838 xref: WBbt:0007850 xref: XAO:0003006 xref: ZFA:0000242 is_a: UBERON:0000468 ! multi-cellular organism [Term] id: UBERON:0003102 name: surface structure alt_id: UBERON:XAO_0003028-ZFA_0000292 def: "Organism subdivision that is the collection of anatomical structures on the body surface[ZFA]." [https://github.com/cmungall/uberon/issues/24, VAO:0000001, Wikipedia:Surface_structure, ZFA:0000292] subset: uberon_slim subset: vertebrate_core synonym: "anatomical surface feature" EXACT [EHDAA2:0003010] xref: AAO:0010337 xref: AEO:0000010 xref: EHDAA2:0003010 xref: TAO:0000292 xref: VAO:0000001 xref: XAO:0003028 xref: ZFA:0000292 is_a: UBERON:0000475 ! organism subdivision relationship: overlaps UBERON:0007376 ! outer epithelial layer [Term] id: UBERON:0003103 name: compound organ alt_id: UBERON:XAO_0003041-ZFA_0000496 def: "Anatomical structure that has as its parts two or more multi-tissue structures of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona fide boundaries from other distinct anatomical structures of different types." [CARO:0000024] subset: organ_slim subset: upper_level synonym: "organ" RELATED [] xref: AAO:0010015 xref: AEO:0000024 xref: BILA:0000024 xref: CARO:0000024 xref: EHDAA2:0003024 xref: HAO:0000024 xref: NIF_GrossAnatomy:birnlex_4 xref: TADS:0000598 xref: TAO:0000496 xref: TGMA:0001837 xref: XAO:0003041 xref: ZFA:0000496 is_a: UBERON:0000062 ! organ [Term] id: UBERON:0003104 name: mesenchyme alt_id: UBERON:XAO_0003046-ZFA_0000393 def: "Portion of tissue consisting of loosely organized undifferentiated mesodermal cells that give rise to such structures as connective tissues, blood, lymphatics, bone, and cartilage[XAO]. A mesh-like cell arrangement, less compact than an epithelium[ZFA]. The part of the embryonic mesoderm, consisting of loosely packed, unspecialized cells set in a gelatinous ground substance, from which connective tissue, bone, cartilage, and the circulatory and lymphatic systems develop[BTO]." [BTO:0001393, Wikipedia:Mesenchyme, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "mesenchymal tissue" EXACT [] synonym: "mesenchyme tissue" EXACT [] synonym: "portion of mesenchymal tissue" EXACT [] synonym: "portion of mesenchyme tissue" EXACT [] xref: AAO:0010427 xref: AEO:0000145 xref: BTO:0001393 xref: EHDAA2:0003145 xref: EV:0100007 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Mesenchymal_Stem_Cell.jpg/200px-Mesenchymal_Stem_Cell.jpg xref: ncithesaurus:Mesenchyme xref: OG:0000170 xref: TAO:0000393 xref: XAO:0003046 xref: ZFA:0000393 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: develops_from UBERON:0000926 ! mesoderm relationship: part_of UBERON:0009142 ! entire mesenchyme [Term] id: UBERON:0003105 name: dorsal lateral plate region alt_id: UBERON:XAO_0003051-ZFA_0005028 def: "Region located near the pronephros and pronephric ducts that is a site of hematopoiesis in the embryo. // Region where blood progenitor markers are expressed. Probable site of definitive hematopoiesis between 36hpf and 4dpf." [PMID:9618755, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "AGM" RELATED [] synonym: "AGM region" RELATED [] synonym: "aorta gonad mesonephros region" RELATED [] synonym: "aorta-gonads-mesonephros region" RELATED [] synonym: "DA roof" RELATED [ZFA:0005028] synonym: "DA-PCV joint " EXACT [ZFA:0005028] synonym: "DLP" EXACT [] synonym: "dorsal aorta - posterior cardinal vein joint" EXACT [ZFA:0005028] synonym: "DP joint" EXACT [ZFA:0005028] synonym: "ventral wall of dorsal aorta" EXACT [] xref: AAO:0011008 xref: EFO:0003699 xref: TAO:0005028 xref: XAO:0003051 xref: ZFA:0005028 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue relationship: part_of UBERON:0000947 ! aorta relationship: part_of UBERON:0002390 ! hematopoietic system relationship: part_of UBERON:0003081 ! lateral plate mesoderm [Term] id: UBERON:0003106 name: urostyle alt_id: UBERON:XAO_0003080-ZFA_0000158 def: "This centrum may be formed via the fusion of the terminal centrum and half-centrum. It is sometimes termed the 'ultimate' vertebra. Mabee and Bird, 2001." [ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "compound centrum" RELATED [] synonym: "last vertebra" RELATED [] synonym: "ultimate vertebra" RELATED [] xref: AAO:0000732 xref: TAO:0000158 xref: XAO:0003080 xref: ZFA:0000158 is_a: UBERON:0002513 ! endochondral bone relationship: part_of UBERON:0002090 ! postcranial axial skeleton [Term] id: UBERON:0003107 name: Meckel's cartilage alt_id: UBERON:XAO_0003085-ZFA_0001205 def: "Meckel's cartilage is the bilaterally paired, rod-like, cartilaginous ventral component of the lower jar, or ventral mandibular arch. It is typically resorbed in adults." [PMID:3693112, Wikipedia:Meckel's_cartilage] comment: This class was created automatically from a combination of ontologies subset: uberon_slim subset: vertebrate_core synonym: "Meckels cartilage" EXACT [] synonym: "ventral mandibular cartilage" EXACT [ZFA:0001205] xref: AAO:0000289 xref: EHDAA:7997 xref: EHDAA2:0001072 xref: EMAPA:17635 xref: EMAPA:17907 xref: MA:0001580 xref: OG:0000249 xref: SCTID:308773009 xref: TAO:0001205 xref: XAO:0003085 xref: ZFA:0001205 is_a: UBERON:0002418 ! cartilage tissue is_a: UBERON:0003566 ! implied link automatically realized ! head connective tissue is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue relationship: part_of UBERON:0001710 ! lower jaw relationship: part_of UBERON:0004362 ! mandibular arch [Term] id: UBERON:0003108 name: suspensorium alt_id: UBERON:XAO_0003086-ZFA_0000444 comment: This class was created automatically from a combination of ontologies synonym: "hyopalatine" RELATED [] synonym: "suspensoria" RELATED [] xref: AAO:0000596 xref: TAO:0000444 xref: XAO:0003086 xref: ZFA:0000444 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0003129 ! skull [Term] id: UBERON:0003109 name: parapophysis alt_id: UBERON:XAO_0003102-ZFA_0001362 def: "Endochondral bone that forms from a lateral outgrowth of the basiventral arcualia and connects the rib with the vertebral centrum[TAO]. A lateral or ventrolateral projections of vertebrae to which ribs are attached in Danio rerio. ZFA: They can arise through replacement ossification of a basiventral or form directly in bone. They are separated from the centrum in basal teleosts, e.g., Leptolepis coryphaenoides, Megalops and Elops." [ZFIN:curator] comment: TODO - check subset: uberon_slim synonym: "lateral process of basiventral" RELATED [] xref: AAO:0000698 xref: AAO:0000708 xref: TAO:0001362 xref: XAO:0003102 xref: ZFA:0001362 is_a: UBERON:0001077 ! transverse process of vertebra relationship: part_of UBERON:0002090 ! postcranial axial skeleton relationship: part_of UBERON:0002513 ! endochondral bone [Term] id: UBERON:0003110 name: otic region alt_id: UBERON:ZFA_0000189-XAO_0003175 synonym: "cranial vault" RELATED [ZFA:0000189] xref: AAO:0010208 xref: XAO:0003175 xref: ZFA:0000189 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0002241 ! chondrocranium [Term] id: UBERON:0003111 name: sphenoid region alt_id: UBERON:ZFA_0000290-XAO_0003174 xref: AAO:0010207 xref: XAO:0003174 xref: ZFA:0000290 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0002241 ! chondrocranium [Term] id: UBERON:0003112 name: olfactory region alt_id: UBERON:ZFA_0000351-XAO_0003172 def: "Anatomical cluster that is located in the anterior region of the cranium and provides structural support for the olfactory organ." [TAO:0000351] synonym: "ethmoid region" EXACT [ZFA:0000351] xref: AAO:0010206 xref: EFO:0003525 xref: TAO:0000351 xref: XAO:0003172 xref: ZFA:0000351 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0002241 ! chondrocranium [Term] id: UBERON:0003113 name: dermatocranium alt_id: UBERON:ZFA_0000863-XAO_0003169 def: "Bony parts of the skull derived from ossifications in the dermis of the skin[FD]." [http://encyclopedia2.thefreedictionary.com/dermatocranium] synonym: "dermal bone cranium" EXACT [ZFA:0000863] xref: AAO:0010154 xref: XAO:0003169 xref: ZFA:0000863 is_a: UBERON:0000032 ! implied link automatically realized ! cranial structure is_a: UBERON:0004765 ! skeletal element relationship: part_of UBERON:0003128 {source="ZFA"} ! cranium [Term] id: UBERON:0003114 name: pharyngeal arch 3 def: "The third branchial arch contributes to the development of the hyoid bone, stylopharyngeus muscle, inferior parathyroid gland, and thymus." [MP:0006339] comment: in XAO, called branchial arch 1 and df VP3 subset: vertebrate_core synonym: "3rd arch" RELATED [EHDAA2:0000069] synonym: "3rd pharyngeal arch" EXACT [] synonym: "branchial arch 1" RELATED SENSU [AAO:0010365, ZFA:0001606] synonym: "first branchial arch" RELATED SENSU [ZFA:0001606] synonym: "first gill arch" EXACT SENSU [ZFA:0001606] synonym: "gill arch 1" EXACT SENSU [ZFA:0001606] synonym: "third branchial arch" EXACT SENSU [] synonym: "third pharyngeal arch" EXACT [] synonym: "third visceral arch" EXACT [] synonym: "visceral arch 3" EXACT [] xref: AAO:0010365 xref: EHDAA:1080 xref: EHDAA2:0000069 xref: EMAPA:16399 xref: OG:0000298 xref: SCTID:308769006 xref: XAO:0000447 xref: ZFA:0001606 is_a: UBERON:0002539 ! pharyngeal arch [Term] id: UBERON:0003115 name: pharyngeal arch 4 def: "contributes to development of the cartilage of the larynx, laryngeal, pharyngeal, and soft palate muscles, superior parathyroid gland, and C-cells of the thymus" [MP:0006340] comment: in XAO, called branchial arch 2 and df VP4 subset: uberon_slim subset: vertebrate_core synonym: "4th arch" RELATED [EHDAA2:0000086] synonym: "4th branchial arch" EXACT SENSU [] synonym: "4th pharyngeal arch" EXACT [] synonym: "4th visceral arch" EXACT [] synonym: "branchial arch 2" RELATED SENSU [AAO:0010366, ZFA:0001607] synonym: "fourth branchial arch" EXACT SENSU [] synonym: "fourth pharyngeal arch" EXACT [] synonym: "gill arch 2" EXACT SENSU [ZFA:0001607] synonym: "second branchial arch" RELATED SENSU [ZFA:0001607] synonym: "second gill arch" EXACT SENSU [ZFA:0001607] synonym: "visceral arch 4" EXACT [] xref: AAO:0010366 xref: EHDAA:1663 xref: EHDAA2:0000086 xref: EMAPA:16760 xref: OG:0000299 xref: SCTID:308770007 xref: XAO:0000449 xref: ZFA:0001607 is_a: UBERON:0002539 ! pharyngeal arch [Term] id: UBERON:0003116 name: pharyngeal arch 5 comment: A fifth arch never establishes itself in amniotes synonym: "5th branchial arch" EXACT [UBERON:cjm] synonym: "branchial arch 3" RELATED [ZFA:0001608] synonym: "branchial arch 3" RELATED SENSU [AAO:0010367, XAO:0000451] synonym: "fifth branchial arch" EXACT [SCTID:308771006] synonym: "fifth visceral arch" EXACT [XAO:0000451] synonym: "gill arch 3" EXACT [ZFA:0001608] synonym: "third branchial arch" RELATED SENSU [XAO:0000451] synonym: "visceral arch 5" EXACT [ZFA:0001608] xref: AAO:0010367 xref: OG:0001204 xref: SCTID:308771006 xref: XAO:0000451 xref: ZFA:0001608 is_a: UBERON:0002539 ! pharyngeal arch [Term] id: UBERON:0003117 name: pharyngeal arch 6 alt_id: UBERON:0004349 alt_id: UBERON:ZFA_0001609-XAO_0000453 def: "The 6th pharyngeal arch. contributes to the development of the sternocleidomastoid and trapezius muscles" [MP:0006347] synonym: "6th branchial arch" EXACT [] synonym: "branchial arch 4" RELATED SENSU [AAO:0010368, ZFA:0001609] synonym: "branchial arch 6" EXACT [] synonym: "fourth branchial arch" RELATED SENSU [] synonym: "gill arch 4" EXACT [ZFA:0001609] synonym: "sixth branchial arch" EXACT [] synonym: "sixth visceral arch" RELATED [XAO:0000453] synonym: "visceral arch 6" EXACT [ZFA:0001609] xref: AAO:0010368 xref: OG:0001205 xref: SCTID:308772004 xref: XAO:0000453 xref: ZFA:0001609 is_a: UBERON:0002539 ! pharyngeal arch [Term] id: UBERON:0003118 name: aortic arch 1 alt_id: UBERON:0004371 alt_id: UBERON:ZFA_0005005-XAO_0000342 def: "the vessels formed within the first pair of branchial arches in embryogenesis" [MP:0006356] subset: vertebrate_core synonym: "1st arch artery" EXACT [EMAPA:16685] synonym: "AA1" EXACT [ZFA:0005005] synonym: "first aortic arch" EXACT [XAO:0000342] synonym: "first branchial arch artery" EXACT [] synonym: "mandibular aortic arch" EXACT [ZFA:0005005] xref: AAO:0010415 xref: EHDAA2:0000007 xref: EMAPA:16685 xref: OG:0000149 xref: SCTID:308774003 xref: TAO:0005004 xref: XAO:0000342 xref: ZFA:0005005 is_a: UBERON:0004363 ! implied link automatically realized ! aortic arch relationship: part_of UBERON:0004362 intersection_of: UBERON:0004363 ! aortic arch intersection_of: part_of UBERON:0004362 ! mandibular arch [Term] id: UBERON:0003119 name: aortic arch 2 alt_id: UBERON:0004372 alt_id: UBERON:ZFA_0005006-XAO_0000343 def: "The first and second arches disappear early, but the dorsal end of the second gives origin to the stapedial artery, a vessel which atrophies in humans but persists in some mammals. It passes through the ring of the stapes and divides into supraorbital, infraorbital, and mandibular branches which follow the three divisions of the trigeminal nerve. The infraorbital and mandibular arise from a common stem, the terminal part of which anastomoses with the external carotid. On the obliteration of the stapedial artery this anastomosis enlarges and forms the internal maxillary artery, and the branches of the stapedial artery are now branches of this vessel. The common stem of the infraorbital and mandibular branches passes between the two roots of the auriculotemporal nerve and becomes the middle meningeal artery; the original supraorbital branch of the stapedial is represented by the orbital twigs of the middle meningeal[WP]." [Wikipedia:Aortic_arches#Arches_1_and_2] subset: vertebrate_core synonym: "2nd arch artery" EXACT [EHDAA2:0000051] synonym: "AA2" EXACT [ZFA:0005006] synonym: "hyoid aortic arch" EXACT [ZFA:0005006] synonym: "second aortic arch" EXACT [XAO:0000343] synonym: "second branchial arch artery" EXACT [] xref: AAO:0010418 xref: EHDAA2:0000051 xref: EMAPA:16686 xref: OG:0000148 xref: SCTID:308775002 xref: XAO:0000343 xref: ZFA:0005006 is_a: UBERON:0004363 ! implied link automatically realized ! aortic arch relationship: part_of UBERON:0003066 intersection_of: UBERON:0004363 ! aortic arch intersection_of: part_of UBERON:0003066 ! hyoid arch [Term] id: UBERON:0003120 name: aortic arch 3 alt_id: UBERON:0004352 alt_id: UBERON:ZFA_0005007-XAO_0000344 def: "The third aortic arch constitutes the commencement of the internal carotid artery, and is therefore named the carotid arch[WP]." [Wikipedia:Aortic_arches#Arch_3] subset: vertebrate_core synonym: "3rd arch artery" EXACT [EHDAA2:0000070] synonym: "AA3" EXACT [ZFA:0005007] synonym: "carotid arch" EXACT [Wikipedia:Aortic_arches#Arch_3] synonym: "third aortic arch" EXACT [XAO:0000344] synonym: "third branchial arch artery" EXACT [] xref: AAO:0010419 xref: EHDAA2:0000070 xref: EMAPA:16687 xref: OG:0000147 xref: SCTID:308776001 xref: XAO:0000344 xref: ZFA:0005007 is_a: UBERON:0004363 ! implied link automatically realized ! aortic arch relationship: part_of UBERON:0003114 intersection_of: UBERON:0004363 ! aortic arch intersection_of: part_of UBERON:0003114 ! pharyngeal arch 3 [Term] id: UBERON:0003121 name: aortic arch 4 alt_id: UBERON:0004350 alt_id: UBERON:ZFA_0005008-XAO_0000355 def: "The fourth right arch forms the right subclavian as far as the origin of its internal mammary branch; while the fourth left arch constitutes the arch of the aorta between the origin of the left carotid artery and the termination of the ductus arteriosus[WP]." [Wikipedia:Aortic_arches#Arch_4] subset: vertebrate_core synonym: "4th arch artery" EXACT [EHDAA2:0000087] synonym: "AA4" EXACT [ZFA:0005008] synonym: "fourth aortic arch" EXACT [XAO:0000355] synonym: "fourth branchial arch artery" EXACT [] xref: AAO:0010420 xref: EHDAA2:0000087 xref: EMAPA:17004 xref: OG:0000146 xref: SCTID:308777005 xref: XAO:0000355 xref: ZFA:0005008 is_a: UBERON:0004363 ! implied link automatically realized ! aortic arch relationship: part_of UBERON:0003115 intersection_of: UBERON:0004363 ! aortic arch intersection_of: part_of UBERON:0003115 ! pharyngeal arch 4 [Term] id: UBERON:0003122 name: aortic arch 5 alt_id: UBERON:ZFA_0005009-XAO_0000352 def: "The fifth arch disappears on both sides[WP]." [Wikipedia:Aortic_arches#Arch_5] subset: vertebrate_core synonym: "AA5" EXACT [ZFA:0005009] synonym: "fifth aortic arch" EXACT [XAO:0000352] xref: AAO:0010421 xref: OG:0000145 xref: SCTID:308778000 xref: XAO:0000352 xref: ZFA:0005009 is_a: UBERON:0004363 ! implied link automatically realized ! aortic arch relationship: part_of UBERON:0003116 intersection_of: UBERON:0004363 ! aortic arch intersection_of: part_of UBERON:0003116 ! pharyngeal arch 5 [Term] id: UBERON:0003123 name: aortic arch 6 alt_id: UBERON:0004351 alt_id: UBERON:ZFA_0005016-XAO_0000353 def: "The sixth right arch disappears; the sixth left arch gives off the pulmonary arteries and forms the ductus arteriosus; this duct remains pervious during the whole of fetal life, but then closes within the first few days after birth due to increased O2 concentration. Oxygen concentration causes the production of bradykinin which causes the ductus to constrict occluding all flow. Within 1-3 months, the ductus is obliterated and becomes the ligamentum arteriosus. His showed that in the early embryo the right and left arches each gives a branch to the lungs, but that later both pulmonary arteries take origin from the left arch[WP]." [Wikipedia:Aortic_arches#Arch_6] subset: vertebrate_core synonym: "6th arch artery" EXACT [EMAPA:17005] synonym: "AA6" EXACT [ZFA:0005016] synonym: "sixth aortic arch" EXACT [XAO:0000353] synonym: "sixth branchial arch artery" EXACT [] xref: AAO:0010422 xref: EHDAA2:0000102 xref: EMAPA:17005 xref: OG:0000144 xref: SCTID:308779008 xref: XAO:0000353 xref: ZFA:0005016 is_a: UBERON:0004363 ! implied link automatically realized ! aortic arch relationship: part_of UBERON:0003117 intersection_of: UBERON:0004363 ! aortic arch intersection_of: part_of UBERON:0003117 ! pharyngeal arch 6 [Term] id: UBERON:0003124 name: chorion def: "The outer membrane of the two membranes enclosing the embryo in reptiles, birds, and mammals. In placental mammals it contributes to the development of the placenta[BTO]. Wikipedia: The chorion is one of the membranes that exists during pregnancy between the developing fetus and mother. It is formed by extraembryonic mesoderm and the two layers of trophoblast and surrounds the embryo and other membranes. The chorionic villi emerge from the chorion, invade the endometrium, and allow transfer of nutrients from maternal blood to fetal blood." [Wikipedia:Chorion] comment: The chorion of placentals is bilaminar as in reptiles and birds, but forms from the trophoblast and includes the ajdacent mesodermal layer [ISBN10:0073040584 "Vertebrates, Kardong"]. subset: uberon_slim synonym: "chorion (vertebrates)" EXACT [] xref: BTO:0000252 xref: EFO:0002780 xref: EHDAA:150 xref: EHDAA2:0000245 xref: EMAPA:16112 xref: EV:0100121 xref: FMA:80224 xref: GAID:1299 xref: MESH:A.16.254.403.473 xref: ncithesaurus:Chorion xref: OG:0000200 is_a: UBERON:0005631 ! extraembryonic membrane relationship: adjacent_to UBERON:0000922 ! embryo relationship: has_part UBERON:0003265 ! chorionic mesoderm relationship: has_part UBERON:0003374 ! chorionic ectoderm [Term] id: UBERON:0003125 name: vitelline membrane def: "a structure directly adjacent to the outer surface of the plasma membrane of an ovum. It is composed mostly of protein fibers, with protein receptors needed for sperm binding, binding to sperm plasma membrane receptors. The species-specificity between these receptors contributes to prevention of breeding between different species [Wikipedia]. A protective layer around the egg[FBbt]." [Wikipedia:Vitelline_membrane] comment: TODO - consider GO CC request. GO:0030704-vitelline membrane formation considered a subclass of CC organization subset: dubious_grouping synonym: "yolk sac membrane" RELATED [BTO:0001450] synonym: "zona pellucida" RELATED [] xref: AAO:0010332 xref: BTO:0001450 xref: EHDAA2:0002220 xref: FBbt:00000042 xref: GAID:1318 xref: MESH:A.16.631.886 xref: XAO:0000030 is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0003126 name: trachea def: "A trachea held open by up to 20 C-shaped rings of cartilage [Wikipedia]. The trachea is the portion of the airway that attaches to the bronchi as it branches [GO:dph]." [GO:0060438, Wikipedia:Vertebrate_trachea] comment: In birds, the trachea runs from the pharynx to the syrinx, from which the primary bronchi diverge. Swans have an unusually elongated trachea, part of which is coiled beneath the sternum; this may act as a resonator to amplify sound. In some birds, the cartilagenous rings are complete, and may even be ossified. In amphibians, the trachea is normally extremely short, and leads directly into the lungs, without clear primary bronchi. A longer trachea is, however found in some long-necked salamanders, and in caecilians. While there are irregular cartilagenous nodules on the amphibian trachea, these do not form the rings found in amniotes. The only vertebrate to have lungs, but no trachea, is Polypterus, in which the lungs arise directly from the pharynx. subset: major_organ subset: uberon_slim synonym: "cartilaginous trachea" EXACT [] synonym: "tracheal tubule" RELATED [BTO:0001388] synonym: "vertebrate trachea" EXACT SENSU [] synonym: "windpipe" EXACT [] xref: AAO:0010140 xref: BTO:0001388 xref: EFO:0000935 xref: EHDAA:3078 xref: EHDAA2:0002066 xref: EMAPA:16853 xref: EV:0100040 xref: FMA:7394 xref: GAID:361 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Illu_conducting_passages.jpg/200px-Illu_conducting_passages.jpg xref: MA:0000441 xref: MAT:0000137 xref: MESH:A.04.889 xref: MIAA:0000137 xref: ncithesaurus:Trachea xref: OG:0000371 xref: OpenCyc:Mx4rvViOX5wpEbGdrcN5Y29ycA xref: SCTID:181213009 xref: XAO:0000118 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001005 ! respiratory airway is_a: UBERON:0005178 ! implied link automatically realized ! thoracic cavity organ relationship: develops_from UBERON:0008947 {source="EHDAA2"} ! respiratory primordium relationship: part_of UBERON:0002224 ! thoracic cavity relationship: part_of UBERON:0007196 ! tracheobronchial tree [Term] id: UBERON:0003127 name: open tracheal system trachea def: "A trachea composed of composed of spiracles, tracheae, and tracheoles [Wikipedia]. An open tracheal system is a respiratory system, a branched network of epithelial tubes that supplies oxygen to target tissues via spiracles. An example of this is found in Drosophila melanogaster." [GO:0007424, Wikipedia:Invertebrate_trachea] comment: TODO check if is_a epithelium subset: uberon_slim synonym: "invertebrate trachea" EXACT [] synonym: "trachea" BROAD SENSU [FBbt:00005043] xref: FBbt:00005043 xref: SPD:0000434 xref: TADS:0000315 is_a: UBERON:0001005 ! respiratory airway relationship: has_part UBERON:0003914 ! epithelial tube [Term] id: UBERON:0003128 name: cranium def: "Upper portion of the skull that excludes the mandible (when present in the organism)." [Wikipedia:Cranium_(anatomy)] comment: The term cranium can be ambiguous, in that it can refer to the neurocranium, or the neurocranium and the Facial skeleton[WP]. subset: uberon_slim subset: vertebrate_core synonym: "bones of cranium" EXACT [FMA:71325] synonym: "calvarium" RELATED [BTO:0001328] synonym: "cranial skeleton" RELATED [] synonym: "epicranial plate" RELATED [] synonym: "ossa cranii" EXACT [FMA:71325, FMA:TA] synonym: "skeletal system of head" RELATED [] xref: BILA:0000115 xref: BTO:0001328 xref: EFO:0000831 xref: EHDAA:6029 xref: EHDAA2:0000325 xref: EMAPA:17680 xref: FMA:71325 xref: MA:0000316 xref: MAT:0000340 xref: MIAA:0000340 xref: OG:0000334 xref: OpenCyc:Mx4rvVlEyJwpEbGdrcN5Y29ycA xref: SCTID:181889008 xref: TAO:0000737 xref: XAO:0003075 xref: ZFA:0000737 is_a: UBERON:0004765 ! skeletal element relationship: part_of UBERON:0003129 ! skull relationship: spatially_disjoint_from UBERON:0001684 ! mandible [Term] id: UBERON:0003129 name: skull def: "Anatomical structure that is part of the head consisting entirely of cranium and mandible." [http://sourceforge.net/tracker/?func=detail&aid=2962656&group_id=76834&atid=1205376, Wikipedia:Skull] comment: In FMA the skull is divided into orbit, neurocranium (8 parts), viscerocranium (26 parts). Here we have a separate overlapping division into cranium and mandible. // A skull that is missing a mandible is only a cranium; this is the source of a very commonly made error in terminology. Those animals having skulls are called craniates[WP]. subset: uberon_slim synonym: "cranial skeleton" RELATED [] synonym: "skeletal system of head" RELATED [] xref: AAO:0000109 xref: BTO:0001295 xref: FMA:46565 xref: GAID:82 xref: galen:Skull xref: MESH:A.02.835.232.781 xref: ncithesaurus:Skull xref: OpenCyc:Mx4rvVjOsZwpEbGdrcN5Y29ycA is_a: UBERON:0004765 ! skeletal element relationship: has_part UBERON:0001684 ! mandible relationship: has_part UBERON:0003128 ! cranium relationship: part_of UBERON:0000033 ! head relationship: part_of UBERON:0005944 ! axial skeleton [Term] id: UBERON:0003130 name: arthropod sternum alt_id: UBERON:FBbt_00004557-FMA_7485-MA_0001331 def: "ventral portion of a segment of an arthropod thorax or abdomen. In insects, the sterna are usually single, large sclerites, and external. However, they can sometimes be divided in two or more, in which case the subunits are called sternites, and may also be modified on the terminal abdominal segments so as to form part of the functional genitalia, in which case they are frequently reduced in size and development, and may become internalized and/or membranous." [Wikipedia:Sternum_(arthropod)] subset: uberon_slim synonym: "sternum" BROAD [] xref: FBbt:00004557 xref: HAO:0000956 is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0003131 name: arthropod tibia def: "A section of the arthropod leg." [Wikipedia:Arthropod_leg] comment: Homologies of leg segments between groups are difficult to prove and are the source of much argument. Some authors posit up to eleven segments per leg for the most recent common ancestor of extant arthropods [1], but modern arthropods have eight or fewer. It has been argued [2][3] that the ancestral leg need not have been so complex, and that other events, such as the successive loss of function of a Hox-gene could result in parallel gains of leg segments. subset: uberon_slim xref: FBbt:00004642 xref: HAO:0001017 xref: TADS:0000281 is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0005895 ! insect leg [Term] id: UBERON:0003132 name: arthropod hypopharynx def: "A median tonguelike structure arising from the mouth." [http://www.britannica.com/EBchecked/topic/279974/hypopharynx] subset: uberon_slim xref: FBbt:00005751 xref: HAO:0000409 xref: TGMA:0000090 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: part_of UBERON:0006562 ! pharynx [Term] id: UBERON:0003133 name: reproductive organ def: "An organ involved in reproduction" [UBERON:xp] comment: GO uses genitalia for the singular organ subset: functional_classification subset: organ_slim synonym: "genital organ" EXACT [] synonym: "genitalia" RELATED PLURAL [] synonym: "reproductive system organ" EXACT [] synonym: "sex organ" EXACT [] xref: EMAPA:17381 xref: MA:0001752 xref: MESH:A.05.360 xref: ncithesaurus:Genitalia xref: OpenCyc:Mx4rwO39aJwpEbGdrcN5Y29ycA xref: SCTID:128181006 xref: TGMA:0000591 xref: WBbt:0008422 is_a: UBERON:0000062 ! organ is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0000990 ! reproductive system [Term] id: UBERON:0003134 name: female reproductive organ def: "A female organ involved in reproduction" [UBERON:xp] subset: organ_slim synonym: "female organism reproductive organ" EXACT [OBOL:automatic] synonym: "female organism reproductive structure" EXACT [OBOL:automatic] synonym: "female organism reproductive system organ" EXACT [OBOL:automatic] synonym: "female organism sex organ" EXACT [OBOL:automatic] synonym: "female reproductive system organ" EXACT [] synonym: "female sex organ" EXACT [] synonym: "reproductive organ of female organism" EXACT [OBOL:automatic] synonym: "reproductive structure of female organism" EXACT [OBOL:automatic] synonym: "reproductive system organ of female organism" EXACT [OBOL:automatic] synonym: "sex organ of female organism" EXACT [OBOL:automatic] xref: EMAPA:17959 xref: MA:0000544 is_a: UBERON:0003133 ! reproductive organ relationship: part_of UBERON:0003100 intersection_of: UBERON:0003133 ! reproductive organ intersection_of: part_of UBERON:0003100 ! female organism relationship: part_of UBERON:0000474 ! female reproductive system [Term] id: UBERON:0003135 name: male reproductive organ def: "A male organ involved in reproduction" [UBERON:xp] subset: organ_slim synonym: "male organism reproductive organ" EXACT [OBOL:automatic] synonym: "male organism reproductive structure" EXACT [OBOL:automatic] synonym: "male organism reproductive system organ" EXACT [OBOL:automatic] synonym: "male organism sex organ" EXACT [OBOL:automatic] synonym: "male reproductive system organ" EXACT [] synonym: "male sex organ" EXACT [] synonym: "reproductive organ of male organism" EXACT [OBOL:automatic] synonym: "reproductive structure of male organism" EXACT [OBOL:automatic] synonym: "reproductive system organ of male organism" EXACT [OBOL:automatic] synonym: "sex organ of male organism" EXACT [OBOL:automatic] xref: EMAPA:17968 xref: MA:0000545 is_a: UBERON:0003133 ! reproductive organ relationship: part_of UBERON:0003101 intersection_of: UBERON:0003133 ! reproductive organ intersection_of: part_of UBERON:0003101 ! male organism relationship: part_of UBERON:0000079 ! male reproductive system [Term] id: UBERON:0003136 name: tagma alt_id: UBERON:FBbt_00000002-HAO_0000988 comment: arthropod specific groupings belong in separate ontology xref: FBbt:00000002 xref: HAO:0000988 is_obsolete: true [Term] id: UBERON:0003137 name: antennal segment alt_id: UBERON:FBbt_00000009-HAO_0000104 comment: arthropod specific groupings belong in separate ontology xref: FBbt:00000009 xref: HAO:0000104 is_obsolete: true [Term] id: UBERON:0003138 name: thoracic segment alt_id: UBERON:FBbt_00000016-HAO_0001013 comment: arthropod specific groupings belong in separate ontology xref: FBbt:00000016 xref: HAO:0001013 is_obsolete: true [Term] id: UBERON:0003139 name: larval tagma alt_id: UBERON:FBbt_00001728-HAO_0000462 comment: arthropod specific groupings belong in separate ontology xref: FBbt:00001728 xref: HAO:0000462 is_obsolete: true [Term] id: UBERON:0003140 name: larval thorax alt_id: UBERON:FBbt_00001741-HAO_0000463 comment: arthropod specific groupings belong in separate ontology xref: FBbt:00001741 xref: HAO:0000463 is_obsolete: true [Term] id: UBERON:0003141 name: larval abdomen alt_id: UBERON:FBbt_00001746-HAO_0000460 xref: FBbt:00001746 xref: HAO:0000460 is_obsolete: true [Term] id: UBERON:0003142 name: prepupa alt_id: UBERON:FBbt_00002952-HAO_0000812 synonym: "PP" RELATED [FBbt:00002952] xref: BTO:0001110 xref: FBbt:00002952 xref: HAO:0000812 is_a: UBERON:0000468 ! multi-cellular organism relationship: develops_from UBERON:0002548 ! larva [Term] id: UBERON:0003143 name: pupa alt_id: UBERON:FBbt_00002953-HAO_0000886 def: "Organism at the pupal stage. The pupal stage is a life stage of some insects undergoing transformation. The pupal stage is found only in holometabolous insects, those that undergo a complete metamorphosis, going through four life stages; embryo, larva, pupa and imago." [Wikipedia:Pupa] xref: BTO:0001143 xref: EFO:0002684 xref: FBbt:00002953 xref: HAO:0000886 xref: OpenCyc:Mx4rwQCBr5wpEbGdrcN5Y29ycA is_a: UBERON:0000468 ! implied link automatically realized ! multi-cellular organism relationship: existence_starts_and_ends_during UBERON:0000070 intersection_of: UBERON:0000468 ! multi-cellular organism intersection_of: existence_starts_and_ends_during UBERON:0000070 ! pupal stage [Term] id: UBERON:0003144 name: adult tagma alt_id: UBERON:FBbt_00003005-HAO_0000089 comment: arthropod specific groupings belong in separate ontology xref: FBbt:00003005 xref: HAO:0000089 is_obsolete: true [Term] id: UBERON:0003145 name: adult arthropod thorax alt_id: UBERON:FBbt_00003018-HAO_0000090 comment: arthropod specific groupings belong in separate ontology xref: FBbt:00003018 xref: HAO:0000090 is_obsolete: true [Term] id: UBERON:0003146 name: adult arthropod abdomen alt_id: UBERON:FBbt_00003023-HAO_0000088 xref: FBbt:00003023 xref: HAO:0000088 is_obsolete: true [Term] id: UBERON:0003147 name: peritreme alt_id: UBERON:FBbt_00003121-HAO_0000712 def: "That part of the integument of an insect which surrounds the spiracles." [http://www.answers.com/topic/peritreme] comment: arthropod specific groupings belong in separate ontology. term also used for edge of the aperture of a univalve shell synonym: "rim" RELATED [FBbt:00003121] xref: FBbt:00003121 xref: HAO:0000712 is_obsolete: true [Term] id: UBERON:0003148 name: sclerite alt_id: UBERON:FBbt_00004475-HAO_0000909 def: "hardened portions of arthropod exoskeletons." [Wikipedia:Sclerite] comment: arthropod specific groupings belong in separate ontology synonym: "plate" RELATED [FBbt:00004475] xref: FBbt:00004475 xref: HAO:0000909 is_obsolete: true [Term] id: UBERON:0003149 name: tergite alt_id: UBERON:FBbt_00004476-HAO_0001005 comment: arthropod specific groupings belong in separate ontology synonym: "abdominal tergite" EXACT [FBbt:00004476] xref: FBbt:00004476 xref: HAO:0001005 is_obsolete: true [Term] id: UBERON:0003150 name: sternite alt_id: UBERON:FBbt_00004477-HAO_0000955 comment: arthropod specific groupings belong in separate ontology synonym: "abdominal sternite" EXACT [FBbt:00004477] xref: FBbt:00004477 xref: HAO:0000955 is_obsolete: true [Term] id: UBERON:0003151 name: foramen alt_id: UBERON:FBbt_00004478-HAO_0000345 comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004478 xref: HAO:0000345 is_obsolete: true [Term] id: UBERON:0003152 name: phragma alt_id: UBERON:FBbt_00004480-HAO_0000716 def: "The lamella that serves as the site of attachment of the longitudinal flight muscle [HAO]." [HAO:0000716] comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004480 xref: HAO:0000716 is_obsolete: true [Term] id: UBERON:0003153 name: head capsule alt_id: UBERON:FBbt_00004482-HAO_0000398 xref: BTO:0004711 xref: EFO:0001927 xref: FBbt:00004482 xref: HAO:0000398 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0003154 name: gena alt_id: UBERON:FBbt_00004491-HAO_0000371 comment: arthropod specific groupings belong in separate ontology synonym: "cheek" RELATED [FBbt:00004491] xref: FBbt:00004491 xref: HAO:0000371 is_obsolete: true [Term] id: UBERON:0003155 name: arthropod occiput alt_id: UBERON:FBbt_00004492-HAO_0000658 comment: arthropod specific groupings belong in separate ontology, but this is retained for disambiguation purposes synonym: "occiput" RELATED SENSU [FBbt:00004492] xref: FBbt:00004492 xref: HAO:0000658 xref: TGMA:0000041 is_a: UBERON:0006056 ! posterior surface of head disjoint_from: UBERON:0006054 ! surface of occiput [Term] id: UBERON:0003156 name: postocciput alt_id: UBERON:FBbt_00004494-HAO_0000790 comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004494 xref: HAO:0000790 is_obsolete: true [Term] id: UBERON:0003157 name: postgena alt_id: UBERON:FBbt_00004496-HAO_0000776 comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004496 xref: HAO:0000776 is_obsolete: true [Term] id: UBERON:0003158 name: tentorial pit alt_id: UBERON:FBbt_00004501-HAO_0000999 comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004501 xref: HAO:0000999 is_obsolete: true [Term] id: UBERON:0003159 name: anterior tentorial pit alt_id: UBERON:FBbt_00004502-HAO_0000126 comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004502 xref: HAO:0000126 is_obsolete: true [Term] id: UBERON:0003160 name: posterior tentorial pit alt_id: UBERON:FBbt_00004503-HAO_0000768 comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004503 xref: HAO:0000768 is_obsolete: true [Term] id: UBERON:0003161 name: dorsal ocellus alt_id: UBERON:FBbt_00004505-HAO_0000661 def: "A simple visual organ of insects[GO]. Two ocelli appear on the vertical and one on the frontal plate[FBbt]. The multi-tissue structure that is located on the top of the head, composed of the corneal lens, pigment cell, rhabdoms and synaptic plexus[HAO]. Two evolutionary distinct ocellus types exist [2]: dorsal ocelli (or simply 'ocelli'), found in most insects, and lateral ocelli (or stemmata), which are found in the larvae of some insect orders. They are structurally and functionally very different. Simple eyes of other animals, e.g. cnidarians may also be referred to as 'ocelli', but again the structure and anatomy of these eyes is quite distinct from those of the dorsal ocelli of insects[Wikipedia]." [FBbt:00004505, GO:0008056, HAO:0000661, Wikipedia:Ocellus#Ocelli] synonym: "dorsal ocelli" RELATED PLURAL [] synonym: "ocelli" RELATED PLURAL [] synonym: "ocellus" EXACT [] xref: BTO:0001758 xref: FBbt:00004505 xref: HAO:0000661 is_a: UBERON:0000963 ! head sensillum [Term] id: UBERON:0003162 name: lateral ocellus alt_id: UBERON:FBbt_00004506-HAO_0000481 def: "The ocellus that is paired[HAO]. The number, form, and function of the dorsal ocelli varies markedly throughout insect orders. They tend to be larger and more strongly expressed in flying insects (particularly bees, wasps, dragonflies and locusts), where they are typically found as a triplet. Two lateral ocelli are directed to the left and right of the head respectively, while a central (median) ocellus is directed frontally. In some terrestrial insects (e.g. some ants and cockroaches), only two lateral ocelli are present: the median ocellus is absent. Note that the unfortunately labelled 'lateral ocelli' here refers to the sideways facing position of the ocelli, which are of the dorsal type. They should not be confused with the lateral ocelli of some insect larvae (see stemmata)[Wikipedia]." [HAO:0000481, Wikipedia:Ocellus#Ocelli] xref: FBbt:00004506 xref: HAO:0000481 is_a: UBERON:0003161 ! dorsal ocellus [Term] id: UBERON:0003163 name: mouthpart alt_id: UBERON:FBbt_00004520-HAO_0000639 comment: TODO xref: FBbt:00004520 xref: HAO:0000639 is_obsolete: true [Term] id: UBERON:0003164 name: clypeus alt_id: UBERON:FBbt_00004521-HAO_0000212 comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004521 xref: HAO:0000212 is_obsolete: true [Term] id: UBERON:0003165 name: cibarium alt_id: UBERON:FBbt_00004526-HAO_0000201 comment: arthropod specific groupings belong in separate ontology synonym: "atrium" RELATED [FBbt:00004526] xref: FBbt:00004526 xref: HAO:0000201 is_obsolete: true [Term] id: UBERON:0003166 name: prementum alt_id: UBERON:FBbt_00004534-HAO_0000804 comment: arthropod specific groupings belong in separate ontology synonym: "theca" RELATED [FBbt:00004534] xref: FBbt:00004534 xref: HAO:0000804 is_obsolete: true [Term] id: UBERON:0003167 name: lacinia alt_id: UBERON:FBbt_00004536-HAO_0000457 comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004536 xref: HAO:0000457 is_obsolete: true [Term] id: UBERON:0003168 name: mentum alt_id: UBERON:FBbt_00004544-HAO_0000534 comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004544 xref: HAO:0000534 is_obsolete: true [Term] id: UBERON:0003169 name: cervical sclerite alt_id: UBERON:FBbt_00004548-HAO_0000195 comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004548 xref: HAO:0000195 is_obsolete: true [Term] id: UBERON:0003170 name: tergum alt_id: UBERON:FBbt_00004552-HAO_0001006 comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004552 xref: HAO:0001006 is_obsolete: true [Term] id: UBERON:0003171 name: episternum alt_id: UBERON:FBbt_00004554-HAO_0000303 comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004554 xref: HAO:0000303 is_obsolete: true [Term] id: UBERON:0003172 name: epimeron alt_id: UBERON:FBbt_00004556-HAO_0000299 comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004556 xref: HAO:0000299 is_obsolete: true [Term] id: UBERON:0003173 name: pronotum alt_id: UBERON:FBbt_00004561-HAO_0000853 comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004561 xref: HAO:0000853 is_obsolete: true [Term] id: UBERON:0003174 name: furcasternum alt_id: UBERON:FBbt_00004570-HAO_0000367 comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004570 xref: HAO:0000367 is_obsolete: true [Term] id: UBERON:0003175 name: prescutum alt_id: UBERON:FBbt_00004582-HAO_0000815 comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004582 xref: HAO:0000815 is_obsolete: true [Term] id: UBERON:0003176 name: anterior notal wing process alt_id: UBERON:FBbt_00004585-HAO_0000120 comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004585 xref: HAO:0000120 is_obsolete: true [Term] id: UBERON:0003177 name: posterior notal wing process alt_id: UBERON:FBbt_00004586-HAO_0000758 comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004586 xref: HAO:0000758 is_obsolete: true [Term] id: UBERON:0003178 name: postnotum alt_id: UBERON:FBbt_00004588-HAO_0000786 comment: arthropod specific groupings belong in separate ontology synonym: "postscutellum" RELATED [FBbt:00004588] xref: FBbt:00004588 xref: HAO:0000786 is_obsolete: true [Term] id: UBERON:0003179 name: pleural wing process alt_id: UBERON:FBbt_00004595-HAO_0000726 comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004595 xref: HAO:0000726 is_obsolete: true [Term] id: UBERON:0003180 name: anepisternum alt_id: UBERON:FBbt_00004597-HAO_0000094 comment: arthropod specific groupings belong in separate ontology synonym: "mesopleurite" RELATED [FBbt:00004597] xref: FBbt:00004597 xref: HAO:0000094 is_obsolete: true [Term] id: UBERON:0003181 name: scutoscutellar suture alt_id: UBERON:FBbt_00004601-HAO_0000920 comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004601 xref: HAO:0000920 is_obsolete: true [Term] id: UBERON:0003182 name: pleural suture alt_id: UBERON:FBbt_00004603-HAO_0000725 xref: FBbt:00004603 xref: HAO:0000725 is_obsolete: true [Term] id: UBERON:0003183 name: notopleural suture alt_id: UBERON:FBbt_00004604-HAO_0000649 xref: FBbt:00004604 xref: HAO:0000649 is_obsolete: true [Term] id: UBERON:0003184 name: mesofurca alt_id: UBERON:FBbt_00004619-HAO_0000547 comment: arthropod specific groupings belong in separate ontology synonym: "mesothoracic sternal apophysis" RELATED [FBbt:00004619] xref: FBbt:00004619 xref: HAO:0000547 is_obsolete: true [Term] id: UBERON:0003185 name: metafurca alt_id: UBERON:FBbt_00004638-HAO_0000592 comment: arthropod specific groupings belong in separate ontology synonym: "metathoracic sternal apophysis" RELATED [FBbt:00004638] xref: FBbt:00004638 xref: HAO:0000592 is_obsolete: true [Term] id: UBERON:0003186 name: coxa alt_id: UBERON:FBbt_00004641-HAO_0000228 comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004641 xref: HAO:0000228 is_obsolete: true [Term] id: UBERON:0003187 name: pretarsus alt_id: UBERON:FBbt_00004653-HAO_0000820 comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004653 xref: HAO:0000820 is_obsolete: true [Term] id: UBERON:0003188 name: auxilia alt_id: UBERON:FBbt_00004654-HAO_0000153 comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004654 xref: HAO:0000153 is_obsolete: true [Term] id: UBERON:0003189 name: unguitractor plate alt_id: UBERON:FBbt_00004658-HAO_0001043 comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004658 xref: HAO:0001043 is_obsolete: true [Term] id: UBERON:0003190 name: empodium alt_id: UBERON:FBbt_00004659-HAO_0000288 xref: FBbt:00004659 xref: HAO:0000288 is_obsolete: true [Term] id: UBERON:0003191 name: tegula alt_id: UBERON:FBbt_00004730-HAO_0000993 comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004730 xref: HAO:0000993 is_obsolete: true [Term] id: UBERON:0003192 name: axillary sclerite alt_id: UBERON:FBbt_00004737-HAO_0000159 comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004737 xref: HAO:0000159 is_obsolete: true [Term] id: UBERON:0003193 name: axillary cord alt_id: UBERON:FBbt_00004744-HAO_0000157 comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004744 xref: HAO:0000157 is_obsolete: true [Term] id: UBERON:0003194 name: imaginal disc-derived wing vein alt_id: UBERON:FBbt_00004751-HAO_0001095 xref: FBbt:00004751 xref: HAO:0001095 is_a: UBERON:0000476 ! acellular anatomical structure relationship: part_of UBERON:0000984 ! imaginal disc-derived wing [Term] id: UBERON:0003195 name: crossvein alt_id: UBERON:FBbt_00004765-HAO_0000236 comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004765 xref: HAO:0000236 is_obsolete: true [Term] id: UBERON:0003196 name: wing cell alt_id: UBERON:FBbt_00004769-HAO_0001091 comment: arthropod specific groupings belong in separate ontology synonym: "intervein" RELATED [FBbt:00004769] xref: FBbt:00004769 xref: HAO:0001091 is_obsolete: true [Term] id: UBERON:0003197 name: costal cell alt_id: UBERON:FBbt_00004770-HAO_0000226 comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004770 xref: HAO:0000226 is_obsolete: true [Term] id: UBERON:0003198 name: aedeagus alt_id: UBERON:FBbt_00004850-HAO_0000091 comment: arthropod specific groupings belong in separate ontology xref: FBbt:00004850 xref: HAO:0000091 is_obsolete: true [Term] id: UBERON:0003199 name: egg chamber alt_id: UBERON:FBbt_00004894-HAO_0000287 synonym: "follicle" RELATED [FBbt:00004894] synonym: "germarium derived egg chamber" EXACT [FBbt:00004894] xref: FBbt:00004894 xref: HAO:0000287 xref: ncithesaurus:Follicle is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0003200 name: pedicel alt_id: UBERON:FBbt_00004920-HAO_0000706 xref: FBbt:00004920 xref: HAO:0000706 is_obsolete: true [Term] id: UBERON:0003201 name: exocuticle alt_id: UBERON:FBbt_00004973-HAO_0000311 def: "The outer layer of the procuticle of certain crustaceans and arthropods, which contains cuticulin, chitin, and phenolic substances that are oxidized to produce the dark pigment of the cuticle;nThe hard and usually darkened layer of the cuticle lying between the endocuticle and epicuticle." [BTO:0001602] xref: BTO:0001602 xref: FBbt:00004973 xref: HAO:0000311 is_a: UBERON:0000476 ! acellular anatomical structure [Term] id: UBERON:0003202 name: endocuticle alt_id: UBERON:FBbt_00004974-HAO_0000290 def: "The inner layer of the procuticle in certain crustaceans and arthropods, which is almost entirely composed of protein and chitin." [BTO:0001603] xref: BTO:0001603 xref: FBbt:00004974 xref: HAO:0000290 is_a: UBERON:0000476 ! acellular anatomical structure [Term] id: UBERON:0003203 name: apodeme alt_id: UBERON:FBbt_00005091-HAO_0000142 comment: arthropod specific groupings belong in separate ontology xref: FBbt:00005091 xref: HAO:0000142 is_obsolete: true [Term] id: UBERON:0003204 name: epipharynx alt_id: UBERON:FBbt_00005750-HAO_0000301 comment: arthropod specific groupings belong in separate ontology xref: FBbt:00005750 xref: HAO:0000301 is_obsolete: true [Term] id: UBERON:0003205 name: articulation alt_id: UBERON:FBbt_00005811-HAO_0000151 comment: incorrect grouping xref: FBbt:00005811 xref: HAO:0000151 xref: ncithesaurus:Articulation is_obsolete: true [Term] id: UBERON:0003206 name: apophysis alt_id: UBERON:FBbt_00005813-HAO_0000143 comment: incorrect grouping xref: FBbt:00005813 xref: FMA:75428 xref: HAO:0000143 is_obsolete: true [Term] id: UBERON:0003207 name: appendage segment alt_id: UBERON:FBbt_00007018-HAO_0000145 comment: arthropod specific groupings belong in separate ontology xref: FBbt:00007018 xref: HAO:0000145 is_obsolete: true [Term] id: UBERON:0003209 name: blood nerve barrier def: "barrier between the perineurium of peripheral nerves and the vascular endothelium of endoneurial capillaries. The perineurium acts as a diffusion barrier, but ion permeability at the blood-nerve barrier is still higher than at the blood-brain barrier[GO]." [GO:0008065, Wikipedia:Blood-nerve_barrier] synonym: "blood-nerve barrier" EXACT [] is_a: UBERON:0000119 ! cell layer relationship: adjacent_to UBERON:0000179 ! haemolymphatic fluid relationship: adjacent_to UBERON:0001021 ! nerve [Term] id: UBERON:0003210 name: blood-cerebrospinal fluid barrier def: "barrier in the choroid plexus located in the lateral, third, and fourth brain ventricles that controls the entrance of substances into the cerebrospinal fluid from the blood[MP]." [MP:0006088] is_a: UBERON:0000119 ! cell layer relationship: adjacent_to UBERON:0000178 ! blood relationship: adjacent_to UBERON:0001359 ! cerebrospinal fluid [Term] id: UBERON:0003211 name: median ocellus def: "The ocellus that is is located medially on the cranium[HAO]. The number, form, and function of the dorsal ocelli varies markedly throughout insect orders. They tend to be larger and more strongly expressed in flying insects (particularly bees, wasps, dragonflies and locusts), where they are typically found as a triplet. Two lateral ocelli are directed to the left and right of the head respectively, while a central (median) ocellus is directed frontally. In some terrestrial insects (e.g. some ants and cockroaches), only two lateral ocelli are present: the median ocellus is absent. Note that the unfortunately labelled 'lateral ocelli' here refers to the sideways facing position of the ocelli, which are of the dorsal type. They should not be confused with the lateral ocelli of some insect larvae (see stemmata)[Wikipedia]." [HAO:0000526, Wikipedia:Ocellus#Ocelli] xref: FBbt:00004507 xref: HAO:0000526 is_a: UBERON:0003161 ! dorsal ocellus [Term] id: UBERON:0003212 name: gustatory organ def: "Any sense organ that functions in (some) detection of chemical stimulus involved in sensory perception of taste (GO:0050912)." [FBC:auto_generated_definition] synonym: "gustatory organ system organ" EXACT [OBOL:automatic] synonym: "gustatory system organ" EXACT [OBOL:automatic] synonym: "organ of gustatory organ system" EXACT [OBOL:automatic] synonym: "organ of gustatory system" EXACT [OBOL:automatic] synonym: "organ of taste system" EXACT [OBOL:automatic] synonym: "taste organ" EXACT [] synonym: "taste system organ" EXACT [OBOL:automatic] xref: FBbt:00005159 xref: FMA:77853 is_a: UBERON:0000005 ! chemosensory organ relationship: part_of UBERON:0001033 ! gustatory system [Term] id: UBERON:0003213 name: cranial ganglion alt_id: UBERON:MA_0000184-MA_0000214-MIAA_0000200-WBbt_0005135-ZFA_0000013 def: "Ganglion which is located in the head." [ZFIN:curator] comment: consider merging with cranial nerve ganglion. MA has distinct terms subset: uberon_slim subset: vertebrate_core synonym: "cranial ganglia" RELATED [] synonym: "cranial ganglion" EXACT [] synonym: "head ganglion" RELATED [] synonym: "presumptive cranial ganglia" RELATED [ZFA:0000013] xref: BTO:0000106 xref: EFO:0000902 xref: EMAPA:16659 xref: MA:0000214 xref: MAT:0000200 xref: MIAA:0000200 xref: OG:0000076 xref: TAO:0000013 xref: XAO:0000027 xref: ZFA:0000013 is_a: UBERON:0000045 ! ganglion relationship: part_of UBERON:0000033 ! head [Term] id: UBERON:0003214 name: mammary gland alveolus def: "a sac-like structure that is found in the mature gland[GO]." [GO:0060749] synonym: "alveolus of lactiferous gland" EXACT [OBOL:automatic] synonym: "alveolus of lobe of breast" EXACT [OBOL:automatic] synonym: "alveolus of lobe of mammary gland" EXACT [OBOL:automatic] synonym: "alveolus of mammary gland" EXACT [OBOL:automatic] synonym: "lactiferous alveolus" EXACT [] synonym: "lactiferous gland alveolus" EXACT [] synonym: "lobe of breast alveolus" EXACT [OBOL:automatic] synonym: "lobe of mammary gland alveolus" EXACT [OBOL:automatic] synonym: "mammary alveolus" EXACT [] xref: FMA:73285 xref: MA:0002760 is_a: UBERON:0003215 ! alveolus is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001911 intersection_of: UBERON:0003215 ! alveolus intersection_of: part_of UBERON:0001911 ! mammary gland relationship: part_of UBERON:0001911 ! mammary gland relationship: part_of UBERON:0001912 ! lobule of lactiferous gland [Term] id: UBERON:0003215 name: alveolus def: "organ part that has the form of a hollow cavity[WP]." [Wikipedia:Alveolus] xref: EFO:0002513 xref: EV:0100043 xref: FMA:82493 xref: ncithesaurus:Alveolus xref: OpenCyc:Mx4rwN8NFZwpEbGdrcN5Y29ycA is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0003216 name: hard palate alt_id: UBERON:FMA_54549-FMA_55023-MA_0002476-MA_0002477-MIAA_0000161 def: "anterior portion of the palate consisting of bone and mucous membranes[GO]." [GO:0060022, Wikipedia:Hard_palate] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "hard palate" EXACT [] xref: EMAPA:18952 xref: FMA:55023 xref: GAID:221 xref: MA:0002477 xref: MAT:0000161 xref: MESH:A.02.835.232.781.324.502.660 xref: MIAA:0000161 xref: ncithesaurus:Hard_Palate xref: SCTID:245778002 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001716 ! secondary palate [Term] id: UBERON:0003217 name: neural lobe of neurohypophysis alt_id: UBERON:FMA_74636-ZFA_0001271 def: "The posterior pituitary (or neurohypophysis) comprises the posterior lobe of the pituitary gland and is part of the endocrine system. Despite its name, the posterior pituitary gland is not a gland, per se; rather, it is largely a collection of axonal projections from the hypothalamus that terminate behind the anterior pituitary gland. [WP,unvetted]." [Wikipedia:Neurohypophysis#cite_note-1] comment: TODO - compare with UBERON:0002198 subset: uberon_slim synonym: "pars nervosa (neurohypophysis)" EXACT [FMA:74636, FMA:TA] synonym: "pars nervosa neurohypophysis" EXACT [FMA:74636, FMA:TA] synonym: "pars nervosa of hypophysis" EXACT [] synonym: "pars nervosa of neurohypophysis" EXACT [] synonym: "pars nervosa of posterior lobe of pituitary gland" EXACT [] synonym: "pars nervosa pituitary gland" EXACT [NIF_GrossAnatomy:birnlex_941] synonym: "pars posterior" EXACT [MA:0000860] synonym: "posterior lobe" BROAD [BTO:0000561] synonym: "posterior lobe of neurohypophysis" EXACT [FMA:74636] synonym: "posterior lobe-3" EXACT [] xref: BTO:0000561 xref: EHDAA:7542 xref: EHDAA2:0001418 xref: FMA:74636 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b9/Pituitary_gland_representation.PNG/200px-Pituitary_gland_representation.PNG xref: MA:0000860 xref: NIF_GrossAnatomy:birnlex_941 xref: OG:0001180 xref: SCTID:424523008 is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure disjoint_from: UBERON:0003043 ! posterior part of anterior commissure relationship: part_of UBERON:0002198 ! neurohypophysis [Term] id: UBERON:0003218 name: ovary septum def: "Septum that divides the ovary, the basal portion of a carpel or group of fused carpels, that encloses the ovule(s)[GO]." [GO:0080126] is_a: UBERON:0003037 ! implied link automatically realized ! septum is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0000992 intersection_of: UBERON:0003037 ! septum intersection_of: part_of UBERON:0000992 ! female gonad [Term] id: UBERON:0003219 name: shell septum def: "Septum that divides the internal chambers (camerae) of the shell of a cephalopod, namely nautiloids or ammonoids." [GO:0080126, Wikipedia:Septum_(marine_biology)] is_a: UBERON:0003037 ! implied link automatically realized ! septum relationship: part_of UBERON:0006612 intersection_of: UBERON:0003037 ! septum intersection_of: part_of UBERON:0006612 ! shell [Term] id: UBERON:0003220 name: metanephric mesenchyme def: "one of the two embryological structures that give rise to the kidney (the other is the ureteric bud). The metanephric blastema mostly develops into nephrons, but can also form parts of the collecting duct system.[WP]. Metanephric mesenchyme is the tissue made up of loosely connected mesenchymal cells in the metanephros[GO]" [GO:0072075, Wikipedia:Metanephric_blastema] comment: (TODO - split?) Genes: The positional specification of the metanephrogenic mesenchyme is negatively regulated by Foxc1 and Foxc2. Next the permanent kidney forming metanephrogenic mesenchyme is specified by Hox11 genes. The competence to respond to ureteric bud inducers is regulated by WT1. GDNF secretion restricted to posterior region by Robo2 and Sprouty1. The receptors for GDNF are synthesized in the nephric ducts and later in ureteric buds [ISBN:9780878932504 "Developmental Biology"] synonym: "metanephric blastema" EXACT [Wikipedia:Metanephric_blastema] synonym: "metanephric mesoderm" EXACT [Wikipedia:Metanephric_blastema] synonym: "metanephrogenic mesenchyme" EXACT [EHDAA:5021] synonym: "metanephros associated mesenchyme" EXACT [EHDAA2:0001139] xref: EHDAA:4041 xref: EHDAA:5021 xref: EHDAA:5915 xref: EHDAA2:0001139 xref: EHDAA2:0004062 xref: EMAPA:17208 xref: EMAPA:17375 xref: EMAPA:29990 xref: OG:0000540 xref: SCTID:361529008 is_a: UBERON:0003918 ! implied link automatically realized ! kidney mesenchyme is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue is_a: UBERON:0005423 ! developing anatomical structure relationship: develops_into UBERON:0000081 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: develops_into UBERON:0000081 ! metanephros relationship: develops_from UBERON:0003074 ! mesonephric duct relationship: induced_by UBERON:0000084 {source="ISBN:9780878932504"} ! ureteric bud relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0003221 name: phalanx def: "Long bones of fingers and toes[Obol]. In primates such as humans and monkeys, the thumb and big toe have two phalanges, while the other fingers and toes consist of three[WP]." [Wikipedia:Phalanx_bones] synonym: "digit long bone" EXACT [OBOL:automatic] synonym: "long bone of digit" EXACT [OBOL:automatic] synonym: "phalanges" EXACT PLURAL [] xref: galen:Phalanx xref: MA:0000304 xref: ncithesaurus:Phalanx xref: OpenCyc:Mx4rvolPZpwpEbGdrcN5Y29ycA xref: SCTID:290029003 is_a: UBERON:0002495 ! long bone is_a: UBERON:0003606 ! implied link automatically realized ! limb long bone relationship: part_of UBERON:0002544 intersection_of: UBERON:0002495 ! long bone intersection_of: part_of UBERON:0002544 ! digit relationship: part_of UBERON:0002544 ! digit [Term] id: UBERON:0003222 name: flexor digitorum superficialis def: "an extrinsic flexor muscle of the fingers at the proximal interphalangeal joints. The muscle has two classically described heads - the humeroulnar and radial - and it is between these heads that the median nerve and ulnar artery pass. The ulnar collateral ligament of elbow joint gives its origin to part of this muscle. The primary function of flexor digitorum superficialis is flexion of the middle phalanges of the fingers at the proximal interphalangeal joints, however under continued action it also flexes the metacarpophalangeal joints and wrist joint[WP]." [Wikipedia:Flexor_digitorum_superficialis_muscle] synonym: "flexor digitorum superficialis muscle" EXACT [Wikipedia:Flexor_digitorum_superficialis_muscle] xref: FMA:38469 is_a: UBERON:0004254 {source="FMA"} ! forelimb zeugopod muscle [Term] id: UBERON:0003224 name: chorion syncytiotrophoblast comment: todo - check xref: EHDAA:156 xref: EHDAA2:0001973 is_a: UBERON:0000478 ! implied link automatically realized ! extraembryonic structure relationship: develops_from UBERON:0000371 relationship: part_of UBERON:0003124 intersection_of: UBERON:0000478 {source="EHDAA2"} ! extraembryonic structure intersection_of: develops_from UBERON:0000371 {source="Obol"} ! syncytiotrophoblast intersection_of: part_of UBERON:0003124 ! chorion [Term] id: UBERON:0003225 name: primitive endoderm of inner cell mass def: "A primitive endoderm that is part of a inner cell mass [Obol]." [OBOL:automatic] comment: TODO - check. Note in MP, hypoblast and primitive endoderm are exact synonyms subset: early_development synonym: "hypoblast" RELATED [MP:0011185] synonym: "inner cell mass primitive endoderm" EXACT [OBOL:automatic] xref: EHDAA:44 is_a: UBERON:0000417 ! implied link automatically realized ! primitive endoderm relationship: part_of UBERON:0000087 intersection_of: UBERON:0000417 ! primitive endoderm intersection_of: part_of UBERON:0000087 ! inner cell mass [Term] id: UBERON:0003228 name: supinator def: "a broad muscle in the posterior compartment of the forearm, curved around the upper third of the radius. Its function is to supinate the forearm." [Wikipedia:Supinator] comment: TODO: The term "supinator" can also refer more generally to a muscle that causes supination of a part of the body. In older texts, the term "supinator longus" was used to refer to the brachioradialis, and "supinator brevis" was used to the muscle now known as the supinator. synonym: "supinator muscle" EXACT [FMA:75002] xref: FMA:38512 xref: FMA:75002 xref: SCTID:181634007 is_a: UBERON:0004254 {source="FMA"} ! forelimb zeugopod muscle [Term] id: UBERON:0003229 name: epithelium of elbow def: "An epithelium that is part of a elbow [Obol]." [OBOL:automatic] synonym: "cubital region epithelial tissue" EXACT [OBOL:automatic] synonym: "cubital region epithelium" EXACT [OBOL:automatic] synonym: "elbow epithelial tissue" EXACT [OBOL:automatic] synonym: "elbow epithelium" EXACT [OBOL:automatic] synonym: "epithelial tissue of cubital region" EXACT [OBOL:automatic] synonym: "epithelial tissue of elbow" EXACT [OBOL:automatic] synonym: "epithelium of cubital region" EXACT [OBOL:automatic] xref: EHDAA:4168 xref: EHDAA:6214 xref: EHDAA2:0000430 xref: EMAPA:17415 xref: OG:0001044 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001461 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001461 ! elbow [Term] id: UBERON:0003230 name: epithelium of carpal region def: "An epithelium that is part of a wrist [Obol]." [OBOL:automatic] synonym: "carpal region epithelial tissue" EXACT [OBOL:automatic] synonym: "carpal region epithelium" EXACT [OBOL:automatic] synonym: "epithelial tissue of carpal region" EXACT [OBOL:automatic] synonym: "epithelial tissue of wrist" EXACT [OBOL:automatic] synonym: "epithelium of wrist" EXACT [OBOL:automatic] synonym: "wrist epithelial tissue" EXACT [OBOL:automatic] synonym: "wrist epithelium" EXACT [OBOL:automatic] xref: EHDAA:5198 xref: EHDAA2:0000219 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001462 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001462 ! wrist [Term] id: UBERON:0003231 name: epithelium of hip def: "An epithelium that is part of a hip [Obol]." [OBOL:automatic] synonym: "epithelial tissue of hip" EXACT [OBOL:automatic] synonym: "epithelial tissue of hip region" EXACT [OBOL:automatic] synonym: "epithelial tissue of regio coxae" EXACT [OBOL:automatic] synonym: "epithelium of hip region" EXACT [OBOL:automatic] synonym: "epithelium of regio coxae" EXACT [OBOL:automatic] synonym: "hip epithelial tissue" EXACT [OBOL:automatic] synonym: "hip epithelium" EXACT [OBOL:automatic] synonym: "hip region epithelial tissue" EXACT [OBOL:automatic] synonym: "hip region epithelium" EXACT [OBOL:automatic] synonym: "regio coxae epithelial tissue" EXACT [OBOL:automatic] synonym: "regio coxae epithelium" EXACT [OBOL:automatic] xref: EHDAA:5155 xref: EHDAA:6180 xref: EHDAA2:0000784 xref: EMAPA:17491 xref: OG:0000779 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001464 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001464 ! hip [Term] id: UBERON:0003232 name: epithelium of knee def: "An epithelium that is part of a knee [Obol]." [OBOL:automatic] synonym: "epithelial tissue of knee" EXACT [OBOL:automatic] synonym: "knee epithelial tissue" EXACT [OBOL:automatic] synonym: "knee epithelium" EXACT [OBOL:automatic] xref: EHDAA:5161 xref: EHDAA:6186 xref: EHDAA2:0000896 xref: EMAPA:17494 xref: OG:0000810 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001465 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001465 ! knee [Term] id: UBERON:0003233 name: epithelium of shoulder def: "An epithelium that is part of a shoulder [Obol]." [OBOL:automatic] synonym: "epithelial tissue of shoulder" EXACT [OBOL:automatic] synonym: "shoulder epithelial tissue" EXACT [OBOL:automatic] synonym: "shoulder epithelium" EXACT [OBOL:automatic] xref: EHDAA:4182 xref: EHDAA:6230 xref: EHDAA2:0001835 xref: EMAPA:17422 xref: OG:0000761 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001467 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001467 ! shoulder [Term] id: UBERON:0003234 name: extensor pollicis longus def: "The Extensor pollicis longus is much larger than the Extensor pollicis brevis muscle, the origin of which it partly covers." [Wikipedia:Extensor_pollicis_longus_muscle] synonym: "extensor pollicis longis" RELATED [Wikipedia:Extensor_pollicis_longus_muscle] synonym: "extensor pollicis longus muscle" EXACT [Wikipedia:Extensor_pollicis_longus_muscle] xref: FMA:38521 xref: SCTID:361820003 is_a: UBERON:0004254 {source="FMA"} ! forelimb zeugopod muscle [Term] id: UBERON:0003235 name: epithelium of upper jaw def: "An epithelium that is part of a upper jaw [Obol]." [OBOL:automatic] synonym: "epithelial tissue of palatoquadrate arch" EXACT [OBOL:automatic] synonym: "epithelial tissue of upper jaw" EXACT [OBOL:automatic] synonym: "epithelium of palatoquadrate arch" EXACT [OBOL:automatic] synonym: "palatoquadrate arch epithelial tissue" EXACT [OBOL:automatic] synonym: "palatoquadrate arch epithelium" EXACT [OBOL:automatic] synonym: "upper jaw epithelial tissue" EXACT [OBOL:automatic] synonym: "upper jaw epithelium" EXACT [OBOL:automatic] xref: EHDAA:8027 xref: EHDAA2:0002119 xref: EMAPA:17943 xref: EMAPA:18971 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001709 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001709 ! upper jaw [Term] id: UBERON:0003236 name: epithelium of lower jaw def: "An epithelium that is part of a lower jaw [Obol]." [OBOL:automatic] synonym: "epithelial tissue of lower jaw" EXACT [OBOL:automatic] synonym: "epithelial tissue of ventral mandibular arch" EXACT [OBOL:automatic] synonym: "epithelium of ventral mandibular arch" EXACT [OBOL:automatic] synonym: "lower jaw epithelial tissue" EXACT [OBOL:automatic] synonym: "lower jaw epithelium" EXACT [OBOL:automatic] synonym: "ventral mandibular arch epithelial tissue" EXACT [OBOL:automatic] synonym: "ventral mandibular arch epithelium" EXACT [OBOL:automatic] xref: EHDAA:7999 xref: EHDAA2:0001019 xref: EMAPA:17922 xref: EMAPA:18968 xref: OG:0000802 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001710 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001710 ! lower jaw [Term] id: UBERON:0003238 name: epithelium of superior semicircular canal def: "An epithelium that is part of an anterior semicircular canal [Obol]." [OBOL:automatic] synonym: "anterior semicircular canal epithelial tissue" EXACT [OBOL:automatic] synonym: "anterior semicircular canal epithelium" EXACT [OBOL:automatic] synonym: "epithelial tissue of anterior semicircular canal" EXACT [OBOL:automatic] synonym: "epithelial tissue of superior semicircular canal" EXACT [OBOL:automatic] synonym: "epithelium of anterior semicircular canal" EXACT [OBOL:automatic] synonym: "superior semicircular canal epithelial tissue" EXACT [OBOL:automatic] synonym: "superior semicircular canal epithelium" EXACT [OBOL:automatic] xref: EHDAA:7806 xref: EHDAA2:0001961 xref: EMAPA:17301 xref: OG:0001039 is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0006937 ! implied link automatically realized ! inner ear epithelium relationship: part_of UBERON:0001841 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001841 ! anterior semicircular canal [Term] id: UBERON:0003239 name: epithelium of posterior semicircular canal def: "An epithelium that is part of a posterior semicircular canal [Obol]." [OBOL:automatic] synonym: "epithelial tissue of posterior semicircular canal" EXACT [OBOL:automatic] synonym: "posterior semicircular canal epithelial tissue" EXACT [OBOL:automatic] synonym: "posterior semicircular canal epithelium" EXACT [OBOL:automatic] xref: EHDAA:7800 xref: EHDAA2:0001491 xref: EMAPA:17298 xref: OG:0000758 is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0006937 ! implied link automatically realized ! inner ear epithelium relationship: part_of UBERON:0001842 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001842 ! posterior semicircular canal [Term] id: UBERON:0003240 name: epithelium of lateral semicircular canal def: "An epithelium that is part of a lateral semicircular canal [Obol]." [OBOL:automatic] synonym: "epithelial tissue of lateral semicircular canal" EXACT [OBOL:automatic] synonym: "lateral semicircular canal epithelial tissue" EXACT [OBOL:automatic] synonym: "lateral semicircular canal epithelium" EXACT [OBOL:automatic] xref: EHDAA:7794 xref: EHDAA2:0000922 xref: EMAPA:17823 xref: OG:0000480 is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0006937 ! implied link automatically realized ! inner ear epithelium relationship: part_of UBERON:0001843 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001843 ! lateral semicircular canal [Term] id: UBERON:0003241 name: epithelium of utricle def: "An epithelium that is part of a utricle of membranous labyrinth [Obol]." [OBOL:automatic] comment: todo - check relationships w.r.t macula synonym: "epithelial tissue of membranous labyrinth utricle" EXACT [OBOL:automatic] synonym: "epithelial tissue of utricle" EXACT [OBOL:automatic] synonym: "epithelial tissue of utricle of membranous labyrinth" EXACT [OBOL:automatic] synonym: "epithelial tissue of utriculus (labyrinthus vestibularis)" EXACT [OBOL:automatic] synonym: "epithelium of macula of utricle of membranous labyrinth" NARROW [FMA:75604] synonym: "epithelium of membranous labyrinth utricle" EXACT [OBOL:automatic] synonym: "epithelium of utricle of membranous labyrinth" EXACT [OBOL:automatic] synonym: "epithelium of utriculus (labyrinthus vestibularis)" EXACT [OBOL:automatic] synonym: "membranous labyrinth utricle epithelial tissue" EXACT [OBOL:automatic] synonym: "membranous labyrinth utricle epithelium" EXACT [OBOL:automatic] synonym: "utricle epithelial tissue" EXACT [OBOL:automatic] synonym: "utricle epithelium" EXACT [OBOL:automatic] synonym: "utricle of membranous labyrinth epithelial tissue" EXACT [OBOL:automatic] synonym: "utricle of membranous labyrinth epithelium" EXACT [OBOL:automatic] synonym: "utriculus (labyrinthus vestibularis) epithelial tissue" EXACT [OBOL:automatic] synonym: "utriculus (labyrinthus vestibularis) epithelium" EXACT [OBOL:automatic] xref: EHDAA:4730 xref: EHDAA2:0002155 xref: EMAPA:17295 xref: EMAPA:17298 xref: EMAPA:17301 xref: EMAPA:17820 xref: EMAPA:17823 xref: FMA:75604 xref: MA:0001204 xref: OG:0000634 is_a: UBERON:0006932 {source="FMA"} ! vestibular epithelium is_a: UBERON:0006934 ! sensory epithelium relationship: part_of UBERON:0001853 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001853 ! utricle of membranous labyrinth relationship: part_of UBERON:0002214 {source="FMA"} ! macula of utricle of membranous labyrinth [Term] id: UBERON:0003242 name: epithelium of saccule def: "An epithelium that is part of a saccule of membranous labyrinth [Obol]." [OBOL:automatic] comment: todo - check relationships w.r.t macula synonym: "epithelial tissue of membranous labyrinth saccule" EXACT [OBOL:automatic] synonym: "epithelial tissue of saccule" EXACT [OBOL:automatic] synonym: "epithelial tissue of saccule of membranous labyrinth" EXACT [OBOL:automatic] synonym: "epithelial tissue of sacculus (labyrinthus vestibularis)" EXACT [OBOL:automatic] synonym: "epithelium of macula of saccule of membranous labyrinth" RELATED [FMA:75605] synonym: "epithelium of membranous labyrinth saccule" EXACT [OBOL:automatic] synonym: "epithelium of saccule of membranous labyrinth" EXACT [OBOL:automatic] synonym: "epithelium of sacculus (labyrinthus vestibularis)" EXACT [OBOL:automatic] synonym: "membranous labyrinth saccule epithelial tissue" EXACT [OBOL:automatic] synonym: "membranous labyrinth saccule epithelium" EXACT [OBOL:automatic] synonym: "saccule epithelial tissue" EXACT [OBOL:automatic] synonym: "saccule epithelium" EXACT [OBOL:automatic] synonym: "saccule of membranous labyrinth epithelial tissue" EXACT [OBOL:automatic] synonym: "saccule of membranous labyrinth epithelium" EXACT [OBOL:automatic] synonym: "sacculus (labyrinthus vestibularis) epithelial tissue" EXACT [OBOL:automatic] synonym: "sacculus (labyrinthus vestibularis) epithelium" EXACT [OBOL:automatic] xref: EHDAA:4724 xref: EHDAA2:0001771 xref: EMAPA:17292 xref: FMA:75605 xref: MA:0001202 xref: OG:0000633 is_a: UBERON:0006932 ! implied link automatically realized ! vestibular epithelium is_a: UBERON:0006934 ! sensory epithelium relationship: part_of UBERON:0001854 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001854 ! saccule of membranous labyrinth [Term] id: UBERON:0003243 name: epithelium of cochlear duct def: "An epithelium that is part of a cochlear duct of membranous labyrinth [Obol]." [OBOL:automatic] synonym: "cochlear duct epithelial tissue" EXACT [OBOL:automatic] synonym: "cochlear duct epithelium" EXACT [OBOL:automatic] synonym: "cochlear duct of membranous labyrinth epithelial tissue" EXACT [OBOL:automatic] synonym: "cochlear duct of membranous labyrinth epithelium" EXACT [OBOL:automatic] synonym: "epithelial tissue of cochlear duct" EXACT [OBOL:automatic] synonym: "epithelial tissue of cochlear duct of membranous labyrinth" EXACT [OBOL:automatic] synonym: "epithelial tissue of Reissner's canal" EXACT [OBOL:automatic] synonym: "epithelium of cochlear duct of membranous labyrinth" EXACT [OBOL:automatic] synonym: "epithelium of Reissner's canal" EXACT [OBOL:automatic] synonym: "Reissner's canal epithelial tissue" EXACT [OBOL:automatic] synonym: "Reissner's canal epithelium" EXACT [OBOL:automatic] xref: EHDAA:4722 xref: EHDAA2:0000264 xref: EMAPA:17600 xref: OG:0000640 is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0006937 ! implied link automatically realized ! inner ear epithelium relationship: part_of UBERON:0001855 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth [Term] id: UBERON:0003244 name: epithelium of mammary gland def: "An epithelium that is part of a lactiferous gland [Obol]." [OBOL:automatic] synonym: "epithelial tissue of lactiferous gland" EXACT [OBOL:automatic] synonym: "epithelial tissue of lobe of breast" EXACT [OBOL:automatic] synonym: "epithelial tissue of lobe of mammary gland" EXACT [OBOL:automatic] synonym: "epithelial tissue of mammary gland" EXACT [OBOL:automatic] synonym: "epithelium of lactiferous gland" EXACT [FMA:74445] synonym: "epithelium of lobe of breast" EXACT [OBOL:automatic] synonym: "epithelium of lobe of mammary gland" EXACT [OBOL:automatic] synonym: "lactiferous gland epithelial tissue" EXACT [OBOL:automatic] synonym: "lactiferous gland epithelium" EXACT [OBOL:automatic] synonym: "lobe of breast epithelial tissue" EXACT [OBOL:automatic] synonym: "lobe of breast epithelium" EXACT [OBOL:automatic] synonym: "lobe of mammary gland epithelial tissue" EXACT [OBOL:automatic] synonym: "lobe of mammary gland epithelium" EXACT [OBOL:automatic] synonym: "mammary epithelium" EXACT [BTO:0001430] synonym: "mammary gland epithelial tissue" EXACT [OBOL:automatic] synonym: "mammary gland epithelium" EXACT [OBOL:automatic] xref: BTO:0001430 xref: EHDAA:6526 xref: EHDAA2:0001057 xref: EMAPA:17760 xref: FMA:74445 xref: MA:0000792 xref: ncithesaurus:Mammary_Epithelium xref: OG:0001088 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001911 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001911 ! mammary gland [Term] id: UBERON:0003246 name: epithelium of endolymphatic sac def: "An epithelium that is part of a endolymphatic sac [Obol]." [OBOL:automatic] synonym: "endolymphatic sac epithelial tissue" EXACT [OBOL:automatic] synonym: "endolymphatic sac epithelium" EXACT [OBOL:automatic] synonym: "epithelial tissue of endolymphatic sac" EXACT [OBOL:automatic] xref: EHDAA:7765 xref: EHDAA2:0000443 xref: EMAPA:17595 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium relationship: part_of UBERON:0002223 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002223 ! endolymphatic sac [Term] id: UBERON:0003247 name: epithelium of forearm def: "An epithelium that is part of a lower arm [Obol]." [OBOL:automatic] synonym: "antebrachial region epithelial tissue" EXACT [OBOL:automatic] synonym: "antebrachial region epithelium" EXACT [OBOL:automatic] synonym: "arm middle limb segment epithelial tissue" EXACT [OBOL:automatic] synonym: "arm middle limb segment epithelium" EXACT [OBOL:automatic] synonym: "arm zeugopod epithelial tissue" EXACT [OBOL:automatic] synonym: "arm zeugopod epithelium" EXACT [OBOL:automatic] synonym: "brachial region middle limb segment epithelial tissue" EXACT [OBOL:automatic] synonym: "brachial region middle limb segment epithelium" EXACT [OBOL:automatic] synonym: "brachial region zeugopod epithelial tissue" EXACT [OBOL:automatic] synonym: "brachial region zeugopod epithelium" EXACT [OBOL:automatic] synonym: "epithelial tissue of antebrachial region" EXACT [OBOL:automatic] synonym: "epithelial tissue of arm middle limb segment" EXACT [OBOL:automatic] synonym: "epithelial tissue of arm zeugopod" EXACT [OBOL:automatic] synonym: "epithelial tissue of brachial region middle limb segment" EXACT [OBOL:automatic] synonym: "epithelial tissue of brachial region zeugopod" EXACT [OBOL:automatic] synonym: "epithelial tissue of intermediate segment of free upper limb" EXACT [OBOL:automatic] synonym: "epithelial tissue of lower arm" EXACT [OBOL:automatic] synonym: "epithelial tissue of lower segment of arm" EXACT [OBOL:automatic] synonym: "epithelial tissue of middle limb segment of arm" EXACT [OBOL:automatic] synonym: "epithelial tissue of middle limb segment of brachial region" EXACT [OBOL:automatic] synonym: "epithelial tissue of middle limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "epithelial tissue of proximal segment of free upper limb middle limb segment" EXACT [OBOL:automatic] synonym: "epithelial tissue of proximal segment of free upper limb zeugopod" EXACT [OBOL:automatic] synonym: "epithelial tissue of zeugopod of arm" EXACT [OBOL:automatic] synonym: "epithelial tissue of zeugopod of brachial region" EXACT [OBOL:automatic] synonym: "epithelial tissue of zeugopod of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "epithelium of antebrachial region" EXACT [OBOL:automatic] synonym: "epithelium of arm middle limb segment" EXACT [OBOL:automatic] synonym: "epithelium of arm zeugopod" EXACT [OBOL:automatic] synonym: "epithelium of brachial region middle limb segment" EXACT [OBOL:automatic] synonym: "epithelium of brachial region zeugopod" EXACT [OBOL:automatic] synonym: "epithelium of intermediate segment of free upper limb" EXACT [OBOL:automatic] synonym: "epithelium of lower arm" EXACT [OBOL:automatic] synonym: "epithelium of lower segment of arm" EXACT [OBOL:automatic] synonym: "epithelium of middle limb segment of arm" EXACT [OBOL:automatic] synonym: "epithelium of middle limb segment of brachial region" EXACT [OBOL:automatic] synonym: "epithelium of middle limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "epithelium of proximal segment of free upper limb middle limb segment" EXACT [OBOL:automatic] synonym: "epithelium of proximal segment of free upper limb zeugopod" EXACT [OBOL:automatic] synonym: "epithelium of zeugopod of arm" EXACT [OBOL:automatic] synonym: "epithelium of zeugopod of brachial region" EXACT [OBOL:automatic] synonym: "epithelium of zeugopod of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "intermediate segment of free upper limb epithelial tissue" EXACT [OBOL:automatic] synonym: "intermediate segment of free upper limb epithelium" EXACT [OBOL:automatic] synonym: "lower arm epithelial tissue" EXACT [OBOL:automatic] synonym: "lower arm epithelium" EXACT [OBOL:automatic] synonym: "lower segment of arm epithelial tissue" EXACT [OBOL:automatic] synonym: "lower segment of arm epithelium" EXACT [OBOL:automatic] synonym: "middle limb segment of arm epithelial tissue" EXACT [OBOL:automatic] synonym: "middle limb segment of arm epithelium" EXACT [OBOL:automatic] synonym: "middle limb segment of brachial region epithelial tissue" EXACT [OBOL:automatic] synonym: "middle limb segment of brachial region epithelium" EXACT [OBOL:automatic] synonym: "middle limb segment of proximal segment of free upper limb epithelial tissue" EXACT [OBOL:automatic] synonym: "middle limb segment of proximal segment of free upper limb epithelium" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb middle limb segment epithelial tissue" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb middle limb segment epithelium" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb zeugopod epithelial tissue" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb zeugopod epithelium" EXACT [OBOL:automatic] synonym: "zeugopod of arm epithelial tissue" EXACT [OBOL:automatic] synonym: "zeugopod of arm epithelium" EXACT [OBOL:automatic] synonym: "zeugopod of brachial region epithelial tissue" EXACT [OBOL:automatic] synonym: "zeugopod of brachial region epithelium" EXACT [OBOL:automatic] synonym: "zeugopod of proximal segment of free upper limb epithelial tissue" EXACT [OBOL:automatic] synonym: "zeugopod of proximal segment of free upper limb epithelium" EXACT [OBOL:automatic] xref: EHDAA:4174 xref: EHDAA:6220 xref: EHDAA2:0000554 xref: EMAPA:17418 xref: OG:0001096 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0002386 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002386 ! forelimb zeugopod [Term] id: UBERON:0003248 name: epithelium of footplate xref: EHDAA:5145 xref: EHDAA:6144 xref: EHDAA2:0000548 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue relationship: part_of UBERON:0006871 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0006871 ! footplate [Term] id: UBERON:0003249 name: epithelium of otic placode def: "An epithelium that is part of a otic placode [Obol]." [OBOL:automatic] comment: editor note - check ZFA, placemeant, appears to refer to both adult structures and primordium synonym: "epithelial tissue of otic placode" EXACT [OBOL:automatic] synonym: "otic epithelium" EXACT [UBERON:cjm] synonym: "otic placode epithelial tissue" EXACT [OBOL:automatic] synonym: "otic placode epithelium" EXACT [OBOL:automatic] xref: EHDAA:510 xref: EHDAA2:0001341 xref: EMAPA:16197 xref: OG:0000636 xref: ZFA:0007068 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue relationship: part_of UBERON:0003069 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0003069 ! otic placode [Term] id: UBERON:0003250 name: rectus capitis lateralis def: "The Rectus capitis lateralis, a short, flat muscle, arises from the upper surface of the transverse process of the atlas, and is inserted into the under surface of the jugular process of the occipital bone." [Wikipedia:Rectus_capitis_lateralis_muscle] subset: organ_slim synonym: "lateral rectus capitis" EXACT [FMA:46316] synonym: "rectus capitis lateralis" RELATED [Wikipedia:Rectus_capitis_lateralis_muscle] synonym: "rectus capitus lateralis" RELATED [Wikipedia:Rectus_capitis_lateralis_muscle] synonym: "rectus capitus lateralis muscle" RELATED [Wikipedia:Rectus_capitis_lateralis_muscle] xref: FMA:46316 xref: SCTID:244841001 is_a: UBERON:0004518 {source="FMA"} ! muscle of vertebral column disjoint_from: UBERON:0001603 ! lateral rectus [Term] id: UBERON:0003251 name: temporal part of head synonym: "temporal region" EXACT [FMA:63867] synonym: "temporal region of head" EXACT [FMA:63867] xref: FMA:63867 xref: SCTID:362620003 is_a: UBERON:0001444 {source="FMA"} ! subdivision of head [Term] id: UBERON:0003252 name: rib cage def: "A bony and cartilaginous structure which surrounds the thoracic (chest) cavity and supports the pectoral (shoulder) girdle, forming a core portion of the human skeleton. A typical human rib cage consists of 24 ribs, the sternum, costal cartilages, and the 12 thoracic vertebrae. It, along with the skin and associated fascia and muscles, makes up the thoracic wall, and provides attachments for the muscles of the neck, thorax, upper abdomen, and back. The human rib cage is a component of the human respiratory system. It encloses the thoracic cavity, which contains the lungs. An inhalation is accomplished when the muscular diaphragm, at the floor of the thoracic cavity, contracts and flattens, while contraction of intercostal muscles lift the rib cage up and out. These actions produce an increase in volume, and a resulting partial vacuum, or negative pressure, in the thoracic cavity, resulting in atmospheric pressure pushing air into the lungs, inflating them. An exhalation results when the diaphragm and intercostal muscles relax, and elastic recoil of the rib cage and lungs expels the air." [Wikipedia:Human_rib_cage] comment: todo - add child terms synonym: "cavea thoracis" EXACT [FMA:7480, FMA:TA] synonym: "thoracic cage" EXACT [FMA:7480] xref: FMA:7480 xref: galen:RibCage xref: SCTID:361741004 is_a: UBERON:0000075 {source="FMA"} ! subdivision of skeletal system is_a: UBERON:0009568 ! implied link automatically realized ! trunk region of vertebral column relationship: part_of UBERON:0000915 {source="FMA"} ! thoracic segment of trunk [Term] id: UBERON:0003253 name: neck of rib def: "The neck of the rib is the flattened portion which extends lateralward from the head; it is about 2.5 cm. long, and is placed in front of the transverse process of the lower of the two vertebrC& with which the head articulates. Its anterior surface is flat and smooth, its posterior rough for the attachment of the ligament of the neck, and perforated by numerous foramina. Of its two borders the superior presents a rough crest (crista colli costE) for the attachment of the anterior costotransverse ligament; its inferior border is rounded. On the posterior surface at the junction of the neck and body, and nearer the lower than the upper border, is an eminencebthe tubercle; it consists of an articular and a non-articular portion. The articular portion, the lower and more medial of the two, presents a small, oval surface for articulation with the end of the transverse process of the lower of the two vertebrC& to which the head is connected. The non-articular portion is a rough elevation, and affords attachment to the ligament of the tubercle. The tubercle is much more prominent in the upper than in the lower ribs." [Wikipedia:Neck_of_rib] synonym: "collum costae" EXACT [Wikipedia:Neck_of_rib] synonym: "rib neck" EXACT [FMA:7576] xref: FMA:7576 xref: SCTID:263359009 is_a: UBERON:0001560 ! implied link automatically realized ! neck of organ is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0002228 intersection_of: UBERON:0001560 ! neck of organ intersection_of: part_of UBERON:0002228 ! rib [Term] id: UBERON:0003254 name: amniotic ectoderm comment: Editor note: we make the germ layer relationship develops_from, as currently the germ layers are declared to be purely embryonic. TODO - check. WP:Amnion - In the human embryo the earliest stages of the formation of the amnion have not been observed; in the youngest embryo which has been studied the amnion was already present as a closed sac, and appears in the inner cell-mass as a cavity. This cavity is roofed in by a single stratum of flattened, ectodermal cells, the amniotic ectoderm, and its floor consists of the prismatic ectoderm of the embryonic disk—the continuity between the roof and floor being established at the margin of the embryonic disk. Outside the amniotic ectoderm is a thin layer of mesoderm, which is continuous with that of the somatopleure and is connected by the body-stalk with the mesodermal lining of the chorion. synonym: "amnion ectoderm" EXACT [OBOL:automatic] xref: EHDAA:138 xref: EHDAA2:0000117 xref: EMAPA:16110 xref: OG:0000621 is_a: UBERON:0000478 ! extraembryonic structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: develops_from UBERON:0000305 ! amnion relationship: develops_from UBERON:0000924 ! ectoderm [Term] id: UBERON:0003255 name: ectoderm of embryo comment: deleted because the original definition was unclear. Me may reconstitute this and to distinguish extramebryonic from embryonic germ layers. See amniotic ectoderm and amniotic mesoderm synonym: "developmental tissue ectoderm" EXACT [OBOL:automatic] synonym: "ectoderm of developmental tissue" EXACT [OBOL:automatic] synonym: "embryo ectoderm" EXACT [OBOL:automatic] xref: EHDAA:132 is_obsolete: true [Term] id: UBERON:0003256 name: endoderm of embryo comment: deleted because the original definition was unclear. Me may reconstitute this and to distinguish extramebryonic from embryonic germ layers. See amniotic ectoderm and amniotic mesoderm synonym: "developmental tissue endoderm" EXACT [OBOL:automatic] synonym: "embryo endoderm" EXACT [OBOL:automatic] synonym: "endoderm of developmental tissue" EXACT [OBOL:automatic] xref: EHDAA:94 is_obsolete: true [Term] id: UBERON:0003257 name: yolk sac endoderm comment: TODO - check xref: EHDAA:166 xref: EHDAA2:0002215 xref: EMAPA:16086 xref: OG:0000626 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000478 {source="EHDAA2"} ! extraembryonic structure relationship: develops_from UBERON:0000925 relationship: part_of UBERON:0001040 intersection_of: UBERON:0000478 ! extraembryonic structure intersection_of: develops_from UBERON:0000925 ! endoderm intersection_of: part_of UBERON:0001040 ! yolk sac [Term] id: UBERON:0003258 name: endoderm of foregut def: "An endoderm that is part of a foregut [Obol]." [OBOL:automatic] comment: TODO - check synonym: "foregut endoderm" EXACT [OBOL:automatic] xref: EHDAA:524 xref: EHDAA2:0000566 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000925 ! implied link automatically realized ! endoderm relationship: part_of UBERON:0001041 intersection_of: UBERON:0000925 ! endoderm intersection_of: part_of UBERON:0001041 ! foregut [Term] id: UBERON:0003259 name: endoderm of midgut def: "An endoderm that is part of a midgut [Obol]." [OBOL:automatic] comment: TODO - check synonym: "midgut endoderm" EXACT [OBOL:automatic] xref: EHDAA:987 xref: EHDAA2:0001194 xref: EMAPA:16257 xref: OG:0001080 is_a: UBERON:0000925 ! implied link automatically realized ! endoderm is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: part_of UBERON:0001045 intersection_of: UBERON:0000925 ! endoderm intersection_of: part_of UBERON:0001045 ! midgut [Term] id: UBERON:0003260 name: endoderm of hindgut def: "An endoderm that is part of a hindgut [Obol]." [OBOL:automatic] comment: TODO - check synonym: "hindgut endoderm" EXACT [OBOL:automatic] xref: EHDAA:979 xref: EHDAA2:0000781 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000925 ! implied link automatically realized ! endoderm relationship: part_of UBERON:0001046 intersection_of: UBERON:0000925 ! endoderm intersection_of: part_of UBERON:0001046 ! hindgut [Term] id: UBERON:0003261 name: thyroid primordium endoderm alt_id: UBERON:0005235 synonym: "endoderm of thyroid primordium" EXACT [OBOL:automatic] xref: EHDAA:956 xref: EHDAA2:0002035 xref: EMAPA:16560 xref: EMAPA:25357 xref: OG:0001089 is_a: UBERON:0000925 ! implied link automatically realized ! endoderm is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: part_of UBERON:0003091 intersection_of: UBERON:0000925 ! endoderm intersection_of: part_of UBERON:0003091 ! thyroid primordium relationship: develops_from UBERON:0007690 {source="ZFA-propagated"} ! early pharyngeal endoderm [Term] id: UBERON:0003262 name: amniotic mesoderm comment: Editor note: we make the germ layer relationship develops_from, as currently the germ layers are declared to be purely embryonic. TODO - check. WP:Amnion - In the human embryo the earliest stages of the formation of the amnion have not been observed; in the youngest embryo which has been studied the amnion was already present as a closed sac, and appears in the inner cell-mass as a cavity. This cavity is roofed in by a single stratum of flattened, ectodermal cells, the amniotic ectoderm, and its floor consists of the prismatic ectoderm of the embryonic disk—the continuity between the roof and floor being established at the margin of the embryonic disk. Outside the amniotic ectoderm is a thin layer of mesoderm, which is continuous with that of the somatopleure and is connected by the body-stalk with the mesodermal lining of the chorion. synonym: "amnion mesoderm" EXACT [OBOL:automatic] xref: EHDAA:140 xref: EHDAA2:0000118 xref: EMAPA:16111 xref: OG:0000622 is_a: UBERON:0000478 ! extraembryonic structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: develops_from UBERON:0000305 ! amnion relationship: develops_from UBERON:0000926 ! mesoderm [Term] id: UBERON:0003264 name: mesoderm of yolk sac def: "A mesoderm that is part of a yolk sac [Obol]." [OBOL:automatic] comment: TODO - check synonym: "yolk sac mesoderm" EXACT [OBOL:automatic] xref: EHDAA:168 xref: EMAPA:16087 xref: OG:0000617 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000926 ! implied link automatically realized ! mesoderm relationship: part_of UBERON:0001040 intersection_of: UBERON:0000926 ! mesoderm intersection_of: part_of UBERON:0001040 ! yolk sac [Term] id: UBERON:0003265 name: chorionic mesoderm comment: TODO - check synonym: "chorion mesoderm" EXACT [EHDAA2:0000247] xref: EHDAA:154 xref: EHDAA2:0000247 xref: EMAPA:16114 xref: OG:0000620 is_a: UBERON:0000478 ! implied link automatically realized ! extraembryonic structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: develops_from UBERON:0000926 relationship: part_of UBERON:0003124 intersection_of: UBERON:0000478 ! extraembryonic structure intersection_of: develops_from UBERON:0000926 ! mesoderm intersection_of: part_of UBERON:0003124 ! chorion relationship: develops_from UBERON:0004871 {source="ISBN10:0073040584"} ! somatic layer of lateral plate mesoderm [Term] id: UBERON:0003266 name: nerve of central nervous system comment: obsoleted pending formal definition of nerve, with explicit reference to PNS vs CNS xref: EHDAA:2851 xref: EMAPA:17263 is_obsolete: true [Term] id: UBERON:0003267 name: tooth of upper jaw def: "A calcareous tooth that is part of a upper jaw [Obol]." [OBOL:automatic] synonym: "calcareous tooth of palatoquadrate arch" EXACT [OBOL:automatic] synonym: "calcareous tooth of upper jaw" EXACT [OBOL:automatic] synonym: "dentine containing tooth of palatoquadrate arch" EXACT [OBOL:automatic] synonym: "dentine containing tooth of upper jaw" EXACT [OBOL:automatic] synonym: "palatoquadrate arch calcareous tooth" EXACT [OBOL:automatic] synonym: "palatoquadrate arch dentine containing tooth" EXACT [OBOL:automatic] synonym: "palatoquadrate arch tooth" EXACT [OBOL:automatic] synonym: "palatoquadrate arch vertebrate tooth" EXACT [OBOL:automatic] synonym: "tooth of palatoquadrate arch" EXACT [OBOL:automatic] synonym: "upper jaw calcareous tooth" EXACT [OBOL:automatic] synonym: "upper jaw dentine containing tooth" EXACT [OBOL:automatic] synonym: "upper jaw tooth" EXACT [OBOL:automatic] synonym: "upper jaw vertebrate tooth" EXACT [OBOL:automatic] synonym: "vertebrate tooth of palatoquadrate arch" EXACT [OBOL:automatic] synonym: "vertebrate tooth of upper jaw" EXACT [OBOL:automatic] xref: EHDAA:8045 xref: EHDAA2:0002129 xref: EMAPA:17938 xref: MA:0001909 xref: ncithesaurus:Upper_Jaw_Tooth is_a: UBERON:0001091 ! implied link automatically realized ! calcareous tooth relationship: part_of UBERON:0001709 intersection_of: UBERON:0001091 ! calcareous tooth intersection_of: part_of UBERON:0001709 ! upper jaw relationship: part_of UBERON:0009680 ! set of upper jaw teeth [Term] id: UBERON:0003268 name: tooth of lower jaw def: "A calcareous tooth that is part of a lower jaw [Obol]." [OBOL:automatic] synonym: "calcareous tooth of lower jaw" EXACT [OBOL:automatic] synonym: "calcareous tooth of ventral mandibular arch" EXACT [OBOL:automatic] synonym: "dentine containing tooth of lower jaw" EXACT [OBOL:automatic] synonym: "dentine containing tooth of ventral mandibular arch" EXACT [OBOL:automatic] synonym: "lower jaw calcareous tooth" EXACT [OBOL:automatic] synonym: "lower jaw dentine containing tooth" EXACT [OBOL:automatic] synonym: "lower jaw tooth" EXACT [OBOL:automatic] synonym: "lower jaw vertebrate tooth" EXACT [OBOL:automatic] synonym: "tooth of ventral mandibular arch" EXACT [OBOL:automatic] synonym: "ventral mandibular arch calcareous tooth" EXACT [OBOL:automatic] synonym: "ventral mandibular arch dentine containing tooth" EXACT [OBOL:automatic] synonym: "ventral mandibular arch tooth" EXACT [OBOL:automatic] synonym: "ventral mandibular arch vertebrate tooth" EXACT [OBOL:automatic] synonym: "vertebrate tooth of lower jaw" EXACT [OBOL:automatic] synonym: "vertebrate tooth of ventral mandibular arch" EXACT [OBOL:automatic] xref: EHDAA:8009 xref: EHDAA2:0001029 xref: EMAPA:17917 xref: MA:0001907 xref: ncithesaurus:Lower_Jaw_Tooth is_a: UBERON:0001091 ! implied link automatically realized ! calcareous tooth relationship: part_of UBERON:0001710 intersection_of: UBERON:0001091 ! calcareous tooth intersection_of: part_of UBERON:0001710 ! lower jaw relationship: part_of UBERON:0009679 ! set of lower jaw teeth [Term] id: UBERON:0003269 name: skeletal muscle of eye def: "A portion of skeletal muscle tissue that is part of a eye [Obol]." [OBOL:automatic] synonym: "eye skeletal muscle" EXACT [OBOL:automatic] synonym: "eye skeletal muscle tissue" EXACT [OBOL:automatic] synonym: "skeletal muscle tissue of eye" EXACT [OBOL:automatic] xref: EHDAA:2923 xref: EHDAA2:0000486 xref: EMAPA:17844 is_a: UBERON:0003899 ! implied link automatically realized ! skeletal muscle of head relationship: part_of UBERON:0000019 intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: part_of UBERON:0000019 ! camera-type eye [Term] id: UBERON:0003270 name: skeletal muscle of leg def: "A portion of skeletal muscle tissue that is part of a tetrapod leg [Obol]." [OBOL:automatic] synonym: "leg skeletal muscle" EXACT [OBOL:automatic] synonym: "leg skeletal muscle tissue" EXACT [OBOL:automatic] synonym: "skeletal muscle tissue of leg" EXACT [OBOL:automatic] xref: EHDAA:8291 xref: EHDAA2:0000974 xref: EMAPA:19144 xref: EMAPA:19318 is_a: UBERON:0001134 ! implied link automatically realized ! skeletal muscle tissue relationship: part_of UBERON:0000978 intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: part_of UBERON:0000978 ! leg [Term] id: UBERON:0003271 name: skeletal muscle of pelvic girdle def: "A portion of skeletal muscle tissue that is part of a pelvic girdle [Obol]." [OBOL:automatic] synonym: "girdle-pelvic skeletal muscle" EXACT [OBOL:automatic] synonym: "girdle-pelvic skeletal muscle tissue" EXACT [OBOL:automatic] synonym: "pelvic girdle bone skeletal muscle" EXACT [OBOL:automatic] synonym: "pelvic girdle bone skeletal muscle tissue" EXACT [OBOL:automatic] synonym: "pelvic girdle skeletal muscle" EXACT [OBOL:automatic] synonym: "pelvic girdle skeletal muscle tissue" EXACT [OBOL:automatic] synonym: "skeletal muscle of girdle-pelvic" EXACT [OBOL:automatic] synonym: "skeletal muscle of pelvic girdle bone" EXACT [OBOL:automatic] synonym: "skeletal muscle tissue of girdle-pelvic" EXACT [OBOL:automatic] synonym: "skeletal muscle tissue of pelvic girdle" EXACT [OBOL:automatic] synonym: "skeletal muscle tissue of pelvic girdle bone" EXACT [OBOL:automatic] xref: EHDAA:8326 xref: EHDAA2:0001430 xref: EMAPA:18185 is_a: UBERON:0001134 ! implied link automatically realized ! skeletal muscle tissue relationship: part_of UBERON:0001271 intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: part_of UBERON:0001271 ! pelvic girdle [Term] id: UBERON:0003272 name: skeletal muscle of arm def: "A portion of skeletal muscle tissue that is part of an arm [Obol]." [OBOL:automatic] synonym: "arm skeletal muscle" EXACT [OBOL:automatic] synonym: "arm skeletal muscle tissue" EXACT [OBOL:automatic] synonym: "brachial region skeletal muscle" EXACT [OBOL:automatic] synonym: "brachial region skeletal muscle tissue" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb skeletal muscle" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb skeletal muscle tissue" EXACT [OBOL:automatic] synonym: "skeletal muscle of brachial region" EXACT [OBOL:automatic] synonym: "skeletal muscle of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "skeletal muscle tissue of arm" EXACT [OBOL:automatic] synonym: "skeletal muscle tissue of brachial region" EXACT [OBOL:automatic] synonym: "skeletal muscle tissue of proximal segment of free upper limb" EXACT [OBOL:automatic] xref: EHDAA:8277 xref: EHDAA2:0000142 xref: EMAPA:19107 is_a: UBERON:0001134 ! implied link automatically realized ! skeletal muscle tissue relationship: part_of UBERON:0001460 intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: part_of UBERON:0001460 ! arm [Term] id: UBERON:0003273 name: skeletal muscle of tongue def: "A portion of skeletal muscle tissue that is part of a tongue [Obol]." [OBOL:automatic] synonym: "skeletal muscle tissue of tongue" EXACT [OBOL:automatic] synonym: "tongue skeletal muscle" EXACT [OBOL:automatic] synonym: "tongue skeletal muscle tissue" EXACT [OBOL:automatic] xref: EHDAA:9146 xref: EHDAA2:0002065 xref: EMAPA:17883 xref: EMAPA:18879 xref: MA:0001596 xref: ncithesaurus:Tongue_Skeletal_Muscle_Tissue xref: OG:0001390 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0003899 ! implied link automatically realized ! skeletal muscle of head relationship: part_of UBERON:0001723 intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: part_of UBERON:0001723 ! tongue relationship: part_of UBERON:0000378 ! tongue muscle [Term] id: UBERON:0003274 name: mesothelium of omental bursa def: "A mesothelium that is part of a lesser sac [Obol]." [OBOL:automatic] synonym: "lesser sac meso-epithelium" EXACT [OBOL:automatic] synonym: "lesser sac mesothelium" EXACT [OBOL:automatic] synonym: "meso-epithelium of lesser sac" EXACT [OBOL:automatic] synonym: "meso-epithelium of omental bursa" EXACT [OBOL:automatic] synonym: "mesothelium of lesser sac" EXACT [OBOL:automatic] synonym: "omental bursa meso-epithelium" EXACT [OBOL:automatic] synonym: "omental bursa mesothelium" EXACT [OBOL:automatic] xref: EHDAA:2339 xref: EHDAA2:0001299 xref: EMAPA:16890 xref: EMAPA:18459 xref: OG:0000441 is_a: UBERON:0005669 ! implied link automatically realized ! peritoneal cavity mesothelium relationship: part_of UBERON:0001341 intersection_of: UBERON:0001136 ! mesothelium intersection_of: part_of UBERON:0001341 ! lesser sac [Term] id: UBERON:0003276 name: skeleton of embryo def: "A skeletal system that is part of a embryo [Obol]." [OBOL:automatic] synonym: "developmental tissue set of all bones" EXACT [OBOL:automatic] synonym: "developmental tissue set of bones of body" EXACT [OBOL:automatic] synonym: "developmental tissue skeletal system" EXACT [OBOL:automatic] synonym: "developmental tissue skeleton" EXACT [OBOL:automatic] synonym: "developmental tissue skeleton system" EXACT [OBOL:automatic] synonym: "embryo set of all bones" EXACT [OBOL:automatic] synonym: "embryo set of bones of body" EXACT [OBOL:automatic] synonym: "embryo skeletal system" EXACT [OBOL:automatic] synonym: "embryo skeleton" EXACT [OBOL:automatic] synonym: "embryo skeleton system" EXACT [OBOL:automatic] synonym: "set of all bones of developmental tissue" EXACT [OBOL:automatic] synonym: "set of all bones of embryo" EXACT [OBOL:automatic] synonym: "set of bones of body of developmental tissue" EXACT [OBOL:automatic] synonym: "set of bones of body of embryo" EXACT [OBOL:automatic] synonym: "skeletal system of developmental tissue" EXACT [OBOL:automatic] synonym: "skeletal system of embryo" EXACT [OBOL:automatic] synonym: "skeleton of developmental tissue" EXACT [OBOL:automatic] synonym: "skeleton system of developmental tissue" EXACT [OBOL:automatic] synonym: "skeleton system of embryo" EXACT [OBOL:automatic] xref: EHDAA:5047 xref: EMAPA:17213 is_a: UBERON:0001434 ! implied link automatically realized ! skeletal system is_a: UBERON:0002050 ! implied link automatically realized ! embryonic structure relationship: part_of UBERON:0000922 intersection_of: UBERON:0001434 ! skeletal system intersection_of: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0003277 name: skeleton of upper jaw def: "A subdivision of skeletal system that is part of a upper jaw [Obol]." [OBOL:automatic] synonym: "palatoquadrate arch subdivision of skeleton" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of palatoquadrate arch" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of upper jaw" EXACT [OBOL:automatic] synonym: "upper jaw subdivision of skeleton" EXACT [OBOL:automatic] xref: AAO:0000622 xref: EHDAA:8041 xref: EHDAA2:0002128 xref: EMAPA:17927 xref: OG:0000429 is_a: UBERON:0000075 ! implied link automatically realized ! subdivision of skeletal system is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001709 intersection_of: UBERON:0000075 ! subdivision of skeletal system intersection_of: part_of UBERON:0001709 ! upper jaw [Term] id: UBERON:0003278 name: skeleton of lower jaw def: "A subdivision of skeletal system that is part of a lower jaw [Obol]." [OBOL:automatic] synonym: "lower jaw subdivision of skeleton" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of lower jaw" EXACT [OBOL:automatic] synonym: "subdivision of skeleton of ventral mandibular arch" EXACT [OBOL:automatic] synonym: "ventral mandibular arch subdivision of skeleton" EXACT [OBOL:automatic] xref: AAO:0000274 xref: EHDAA:8005 xref: EHDAA2:0004606 xref: EMAPA:17910 xref: OG:0000428 is_a: UBERON:0000075 ! implied link automatically realized ! subdivision of skeletal system is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001710 intersection_of: UBERON:0000075 ! subdivision of skeletal system intersection_of: part_of UBERON:0001710 ! lower jaw relationship: part_of UBERON:0001704 {source="EHDAA2"} ! viscerocranium [Term] id: UBERON:0003279 name: endothelium of trachea synonym: "endothelium of windpipe" EXACT [OBOL:automatic] synonym: "trachea endothelium" EXACT [OBOL:automatic] synonym: "windpipe endothelium" EXACT [OBOL:automatic] xref: EHDAA:3082 xref: EHDAA2:0002068 is_a: UBERON:0001901 ! implied link automatically realized ! epithelium of trachea is_a: UBERON:0001986 ! implied link automatically realized ! endothelium relationship: part_of UBERON:0003126 intersection_of: UBERON:0001986 ! endothelium intersection_of: part_of UBERON:0003126 ! trachea [Term] id: UBERON:0003280 name: endothelium of main bronchus def: "An endothelium that is part of a main bronchus [Obol]." [OBOL:automatic] synonym: "bronchus principalis endothelium" EXACT [OBOL:automatic] synonym: "endothelium of bronchus principalis" EXACT [OBOL:automatic] synonym: "endothelium of primary bronchus" EXACT [OBOL:automatic] synonym: "endothelium of principal bronchus" EXACT [OBOL:automatic] synonym: "main bronchus endothelium" EXACT [OBOL:automatic] synonym: "primary bronchus endothelium" EXACT [OBOL:automatic] synonym: "principal bronchus endothelium" EXACT [OBOL:automatic] xref: EHDAA:3076 xref: EHDAA2:0001046 is_a: UBERON:0001986 ! implied link automatically realized ! endothelium is_a: UBERON:0002340 ! implied link automatically realized ! epithelium of main bronchus relationship: part_of UBERON:0002182 intersection_of: UBERON:0001986 ! endothelium intersection_of: part_of UBERON:0002182 ! main bronchus [Term] id: UBERON:0003281 name: mesentery of stomach def: "The portion of the primitive mesentery that encloses the stomach; from its dorsal sheet, the greater omentum develops, and from its ventral sheet, the lesser omentum." [http://medical-dictionary.thefreedictionary.com/mesogastrium] comment: todo - check primitive vs developed synonym: "mesentery of ventriculus" EXACT [OBOL:automatic] synonym: "mesogaster" EXACT [http://medical-dictionary.thefreedictionary.com/mesogastrium] synonym: "mesogastium" EXACT [MA:0001617] synonym: "mesogastrium" EXACT [http://www.vivo.colostate.edu/hbooks/pathphys/misc_topics/peritoneum.html] synonym: "stomach mesentery" EXACT [Obol:obol] synonym: "ventriculus mesentery" EXACT [OBOL:automatic] xref: EHDAA:2999 xref: EHDAA2:0001922 xref: EMAPA:17024 xref: EMAPA:18902 xref: MA:0001617 xref: OG:0000358 xref: SCTID:261623000 is_a: UBERON:0004854 {source="MA"} ! gastrointestinal system mesentery is_a: UBERON:0009034 ! implied link automatically realized ! stomach region relationship: part_of UBERON:0000945 intersection_of: UBERON:0002095 ! mesentery intersection_of: part_of UBERON:0000945 ! stomach relationship: part_of UBERON:0000945 {source="MA"} ! stomach [Term] id: UBERON:0003282 name: mesentery of heart def: "A mesentery that is part of a heart [Obol]." [OBOL:automatic] synonym: "heart mesentery" EXACT [OBOL:automatic] xref: EHDAA:432 xref: EHDAA2:0000739 xref: EMAPA:16212 xref: OG:0000353 is_a: UBERON:0002095 ! implied link automatically realized ! mesentery is_a: UBERON:0005983 ! implied link automatically realized ! heart layer relationship: part_of UBERON:0000948 intersection_of: UBERON:0002095 ! mesentery intersection_of: part_of UBERON:0000948 ! heart [Term] id: UBERON:0003283 name: mesentery of oesophagus def: "A mesentery that is part of a esophagus [Obol]." [OBOL:automatic] synonym: "esophagus mesentery" EXACT [OBOL:automatic] synonym: "gullet mesentery" EXACT [OBOL:automatic] synonym: "mesentery of esophagus" EXACT [OBOL:automatic] synonym: "mesentery of gullet" EXACT [OBOL:automatic] synonym: "oesophagus mesentery" EXACT [OBOL:automatic] xref: EHDAA:2943 xref: EHDAA2:0001288 xref: EMAPA:16836 xref: EMAPA:18864 xref: MA:0001569 xref: OG:0000415 is_a: UBERON:0001975 ! implied link automatically realized ! serosa of esophagus is_a: UBERON:0002095 ! implied link automatically realized ! mesentery relationship: part_of UBERON:0001043 intersection_of: UBERON:0002095 ! mesentery intersection_of: part_of UBERON:0001043 ! esophagus [Term] id: UBERON:0003284 name: mesentery of midgut def: "A mesentery that is part of a midgut [Obol]." [OBOL:automatic] synonym: "midgut mesentery" EXACT [OBOL:automatic] xref: EHDAA:3031 xref: EHDAA2:0001202 xref: EMAPA:16721 xref: EMAPA:17039 xref: EMAPA:17045 xref: EMAPA:17197 xref: OG:0000413 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002095 ! implied link automatically realized ! mesentery relationship: part_of UBERON:0001045 intersection_of: UBERON:0002095 ! mesentery intersection_of: part_of UBERON:0001045 ! midgut [Term] id: UBERON:0003285 name: limb of embryo def: "A limb that is part of a embryo [Obol]." [OBOL:automatic] synonym: "developmental tissue limb" EXACT [OBOL:automatic] synonym: "embryo limb" EXACT [OBOL:automatic] synonym: "limb of developmental tissue" EXACT [OBOL:automatic] xref: EHDAA:1697 xref: EMAPA:16405 is_a: UBERON:0002050 ! implied link automatically realized ! embryonic structure is_a: UBERON:0002101 ! implied link automatically realized ! limb relationship: part_of UBERON:0000922 intersection_of: UBERON:0002101 ! limb intersection_of: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0003286 name: duodenum of foregut def: "A duodenum that is part of a foregut [Obol]." [OBOL:automatic] synonym: "foregut duodenum" EXACT [OBOL:automatic] xref: EHDAA:3830 xref: EHDAA2:0000560 xref: EMAPA:17178 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002114 ! implied link automatically realized ! duodenum relationship: part_of UBERON:0001041 intersection_of: UBERON:0002114 ! duodenum intersection_of: part_of UBERON:0001041 ! foregut [Term] id: UBERON:0003287 name: duodenum of midgut def: "A duodenum that is part of a midgut [Obol]." [OBOL:automatic] synonym: "midgut duodenum" EXACT [OBOL:automatic] xref: EHDAA:3937 xref: EHDAA2:0001189 xref: EMAPA:17193 is_a: UBERON:0002114 ! implied link automatically realized ! duodenum relationship: part_of UBERON:0001045 intersection_of: UBERON:0002114 ! duodenum intersection_of: part_of UBERON:0001045 ! midgut [Term] id: UBERON:0003288 name: meninx of midbrain def: "A meninx that is part of a midbrain [Obol]." [OBOL:automatic] synonym: "meninges of midbrain" EXACT PLURAL [OBOL:automatic] synonym: "midbrain meninges" EXACT PLURAL [OBOL:automatic] synonym: "midbrain meninx" EXACT [OBOL:automatic] xref: EHDAA:3708 xref: EHDAA2:0001109 xref: EHDAA2:0001174 xref: EMAPA:17791 xref: MA:0001058 xref: OG:0000012 is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain is_a: UBERON:0003547 ! implied link automatically realized ! brain meninx relationship: part_of UBERON:0001891 intersection_of: UBERON:0002360 ! meninx intersection_of: part_of UBERON:0001891 ! midbrain [Term] id: UBERON:0003289 name: meninx of telencephalon def: "A meninx that is part of a telencephalon [Obol]." [OBOL:automatic] synonym: "meninges of telencephalon" EXACT PLURAL [OBOL:automatic] synonym: "telencephalon meninges" EXACT PLURAL [OBOL:automatic] synonym: "telencephalon meninx" EXACT [OBOL:automatic] xref: EHDAA:5476 xref: EHDAA2:0001990 xref: EMAPA:17774 xref: MA:0000979 xref: OG:0000010 is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon is_a: UBERON:0003548 ! implied link automatically realized ! forebrain meninges relationship: part_of UBERON:0001893 intersection_of: UBERON:0002360 ! meninx intersection_of: part_of UBERON:0001893 ! telencephalon [Term] id: UBERON:0003290 name: meninx of diencephalon def: "A meninx that is part of a diencephalon [Obol]." [OBOL:automatic] synonym: "between brain meninges" EXACT [OBOL:automatic] synonym: "between brain meninx" EXACT [OBOL:automatic] synonym: "diencephalon meninges" EXACT [OBOL:automatic] synonym: "diencephalon meninx" EXACT [OBOL:automatic] synonym: "interbrain meninges" EXACT [OBOL:automatic] synonym: "interbrain meninx" EXACT [OBOL:automatic] synonym: "mature diencephalon meninges" EXACT [OBOL:automatic] synonym: "mature diencephalon meninx" EXACT [OBOL:automatic] synonym: "meninges of between brain" EXACT [OBOL:automatic] synonym: "meninges of diencephalon" EXACT [OBOL:automatic] synonym: "meninges of interbrain" EXACT [OBOL:automatic] synonym: "meninges of mature diencephalon" EXACT [OBOL:automatic] synonym: "meninx of between brain" EXACT [OBOL:automatic] synonym: "meninx of interbrain" EXACT [OBOL:automatic] synonym: "meninx of mature diencephalon" EXACT [OBOL:automatic] xref: EHDAA:5458 xref: EHDAA2:0000399 xref: EMAPA:17764 xref: MA:0000826 xref: OG:0000009 is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon is_a: UBERON:0003548 ! implied link automatically realized ! forebrain meninges relationship: part_of UBERON:0001894 intersection_of: UBERON:0002360 ! meninx intersection_of: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0003291 name: meninx of hindbrain def: "A meninx that is part of a hindbrain [Obol]." [OBOL:automatic] synonym: "hindbrain meninges" EXACT [OBOL:automatic] synonym: "hindbrain meninx" EXACT [OBOL:automatic] synonym: "meninges of hindbrain" EXACT [OBOL:automatic] xref: EHDAA:3688 xref: EHDAA2:0000770 xref: EMAPA:17783 xref: MA:0000987 xref: OG:0000011 is_a: UBERON:0003547 ! implied link automatically realized ! brain meninx relationship: part_of UBERON:0002028 intersection_of: UBERON:0002360 ! meninx intersection_of: part_of UBERON:0002028 ! hindbrain [Term] id: UBERON:0003292 name: meninx of spinal cord def: "A meninx that is part of a spinal cord [Obol]." [OBOL:automatic] synonym: "menines of spinal cord" EXACT PLURAL [] synonym: "meninges of spinal cord" EXACT [OBOL:automatic] synonym: "spinal cord meninges" EXACT [OBOL:automatic] synonym: "spinal cord meninx" EXACT [OBOL:automatic] synonym: "spinal meninges" EXACT PLURAL [] synonym: "spinal meninx" EXACT [] xref: EHDAA:2865 xref: EHDAA2:0001895 xref: EMAPA:17804 xref: MA:0001130 xref: ncithesaurus:Spinal_Meninges xref: OG:0000443 xref: SCTID:181097002 is_a: UBERON:0002360 ! implied link automatically realized ! meninx is_a: UBERON:0005174 ! implied link automatically realized ! back organ relationship: part_of UBERON:0002240 intersection_of: UBERON:0002360 ! meninx intersection_of: part_of UBERON:0002240 ! spinal cord [Term] id: UBERON:0003293 name: gland of oral region def: "A gland that is part of a oral opening [Obol]." [OBOL:automatic] synonym: "gland of oral opening" EXACT [OBOL:automatic] synonym: "gland of oral part of face" EXACT [OBOL:automatic] synonym: "gland of subdivision of mouth" EXACT [OBOL:automatic] synonym: "oral opening gland" EXACT [OBOL:automatic] synonym: "oral part of face gland" EXACT [OBOL:automatic] synonym: "oral region gland" EXACT [OBOL:automatic] synonym: "subdivision of mouth gland" EXACT [OBOL:automatic] xref: EHDAA:2181 xref: EHDAA2:0001327 xref: EMAPA:16572 xref: EMAPA:16723 xref: OG:0000652 is_a: UBERON:0003408 ! implied link automatically realized ! gland of gut is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0000166 intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0000166 ! oral opening [Term] id: UBERON:0003294 name: gland of foregut def: "A gland that is part of a foregut [Obol]." [OBOL:automatic] synonym: "foregut gland" EXACT [OBOL:automatic] xref: EHDAA:950 xref: EHDAA2:0000567 xref: EMAPA:16557 xref: OG:0000650 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003408 ! implied link automatically realized ! gland of gut relationship: part_of UBERON:0001041 intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0001041 ! foregut [Term] id: UBERON:0003295 name: pharyngeal gland def: "Racemose mucous glands beneath the mucous membrane of the pharynx." [Biology-Online_Dictionary:http\://www.biology-online.org/dictionary/] subset: organ_slim synonym: "glandulae pharyngeae" RELATED [BTO:0004849] synonym: "pharynx gland" EXACT [EHDAA2:0001461] xref: BTO:0004849 xref: EHDAA:2967 xref: EHDAA2:0001461 xref: FMA:55075 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003408 ! implied link automatically realized ! gland of gut relationship: part_of UBERON:0001042 intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0001042 ! chordate pharynx relationship: part_of UBERON:0001042 {source="BTO"} ! chordate pharynx [Term] id: UBERON:0003296 name: gland of diencephalon def: "A gland that is part of a diencephalon [Obol]." [OBOL:automatic] synonym: "between brain gland" EXACT [OBOL:automatic] synonym: "diencephalon gland" EXACT [OBOL:automatic] synonym: "gland of between brain" EXACT [OBOL:automatic] synonym: "gland of interbrain" EXACT [OBOL:automatic] synonym: "gland of mature diencephalon" EXACT [OBOL:automatic] synonym: "interbrain gland" EXACT [OBOL:automatic] synonym: "mature diencephalon gland" EXACT [OBOL:automatic] xref: EHDAA:4475 xref: EHDAA2:0000395 xref: EMAPA:16646 xref: EMAPA:16897 xref: OG:0000653 is_a: UBERON:0002530 ! implied link automatically realized ! gland is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001894 intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0003297 name: gland of integumental system def: "A gland that is part of a integumental system [Obol]." [OBOL:automatic] synonym: "integumental system gland" EXACT [OBOL:automatic] xref: EHDAA:6522 xref: EHDAA2:0000837 xref: EMAPA:17758 xref: MA:0000144 xref: OG:0000654 is_a: UBERON:0002530 ! implied link automatically realized ! gland relationship: part_of UBERON:0002416 intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0002416 ! integumental system [Term] id: UBERON:0003298 name: roof plate of neural tube def: "A roof plate that is part of a neural tube [Obol]." [OBOL:automatic] subset: vertebrate_core synonym: "neural tube roof plate" EXACT [OBOL:automatic] synonym: "neural tube roofplate" EXACT [OBOL:automatic] synonym: "roof plate neural tube region" EXACT [ZFA:0001436] synonym: "roofplate of neural tube" EXACT [OBOL:automatic] xref: EHDAA:2891 xref: EHDAA:916 xref: EHDAA2:0001270 xref: EMAPA:16168 xref: EMAPA:16535 xref: OG:0000303 xref: ZFA:0001436 is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue relationship: part_of UBERON:0001049 relationship: part_of UBERON:0003054 intersection_of: UBERON:0000479 ! tissue intersection_of: part_of UBERON:0001049 ! neural tube intersection_of: part_of UBERON:0003054 ! roof plate [Term] id: UBERON:0003299 name: roof plate of midbrain def: "A roof plate that is part of a midbrain [Obol]." [OBOL:automatic] subset: vertebrate_core synonym: "midbrain roof plate" EXACT [OBOL:automatic] synonym: "midbrain roofplate" EXACT [OBOL:automatic] synonym: "roof plate midbrain region" EXACT [ZFA:0000355] synonym: "roofplate of midbrain" EXACT [OBOL:automatic] xref: EHDAA:3712 xref: EHDAA2:0001111 xref: EHDAA2:0001177 xref: EMAPA:16981 xref: OG:0000772 xref: ZFA:0000355 is_a: UBERON:0003298 ! implied link automatically realized ! roof plate of neural tube relationship: part_of UBERON:0001891 relationship: part_of UBERON:0003054 intersection_of: UBERON:0000479 ! tissue intersection_of: part_of UBERON:0001891 ! midbrain intersection_of: part_of UBERON:0003054 ! roof plate [Term] id: UBERON:0003300 name: roof plate of telencephalon def: "A roof plate that is part of a telencephalon [Obol]." [OBOL:automatic] synonym: "roofplate of telencephalon" EXACT [OBOL:automatic] synonym: "telencephalon roof plate" EXACT [OBOL:automatic] synonym: "telencephalon roofplate" EXACT [OBOL:automatic] xref: EHDAA:3512 xref: EHDAA2:0001994 xref: EMAPA:16657 xref: OG:0000774 is_a: UBERON:0003298 ! implied link automatically realized ! roof plate of neural tube relationship: part_of UBERON:0001893 relationship: part_of UBERON:0003054 intersection_of: UBERON:0000479 ! tissue intersection_of: part_of UBERON:0001893 ! telencephalon intersection_of: part_of UBERON:0003054 ! roof plate [Term] id: UBERON:0003301 name: roof plate of diencephalon def: "A roof plate that is part of a diencephalon [Obol]." [OBOL:automatic] subset: vertebrate_core synonym: "between brain roof plate" EXACT [OBOL:automatic] synonym: "between brain roofplate" EXACT [OBOL:automatic] synonym: "diencephalon roof plate" EXACT [OBOL:automatic] synonym: "diencephalon roofplate" EXACT [OBOL:automatic] synonym: "interbrain roof plate" EXACT [OBOL:automatic] synonym: "interbrain roofplate" EXACT [OBOL:automatic] synonym: "mature diencephalon roof plate" EXACT [OBOL:automatic] synonym: "mature diencephalon roofplate" EXACT [OBOL:automatic] synonym: "roof plate diencephalic region" EXACT [ZFA:0001358] synonym: "roof plate of between brain" EXACT [OBOL:automatic] synonym: "roof plate of interbrain" EXACT [OBOL:automatic] synonym: "roof plate of mature diencephalon" EXACT [OBOL:automatic] synonym: "roofplate of between brain" EXACT [OBOL:automatic] synonym: "roofplate of diencephalon" EXACT [OBOL:automatic] synonym: "roofplate of interbrain" EXACT [OBOL:automatic] synonym: "roofplate of mature diencephalon" EXACT [OBOL:automatic] xref: EHDAA:1979 xref: EHDAA:2657 xref: EHDAA:3494 xref: EHDAA2:0000402 xref: EMAPA:16651 xref: EMAPA:16909 xref: OG:0000771 xref: ZFA:0001358 is_a: UBERON:0003298 ! implied link automatically realized ! roof plate of neural tube relationship: part_of UBERON:0001894 relationship: part_of UBERON:0003054 intersection_of: UBERON:0000479 ! tissue intersection_of: part_of UBERON:0001894 ! diencephalon intersection_of: part_of UBERON:0003054 ! roof plate [Term] id: UBERON:0003302 name: roof plate of metencephalon def: "A roof plate that is part of a metencephalon [Obol]." [OBOL:automatic] synonym: "epencephalon-2 roof plate" EXACT [OBOL:automatic] synonym: "epencephalon-2 roofplate" EXACT [OBOL:automatic] synonym: "metencephalon roof plate" EXACT [OBOL:automatic] synonym: "metencephalon roofplate" EXACT [OBOL:automatic] synonym: "roof plate of epencephalon-2" EXACT [OBOL:automatic] synonym: "roofplate of epencephalon-2" EXACT [OBOL:automatic] synonym: "roofplate of metencephalon" EXACT [OBOL:automatic] xref: EHDAA:5524 xref: EHDAA2:0001160 xref: EMAPA:17098 xref: EMAPA:17105 xref: OG:0000770 is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon is_a: UBERON:0003298 ! implied link automatically realized ! roof plate of neural tube relationship: part_of UBERON:0001895 relationship: part_of UBERON:0003054 intersection_of: UBERON:0000479 ! tissue intersection_of: part_of UBERON:0001895 ! metencephalon intersection_of: part_of UBERON:0003054 ! roof plate [Term] id: UBERON:0003303 name: roof plate of medulla oblongata def: "A roof plate that is part of a medulla oblongata [Obol]." [OBOL:automatic] synonym: "bulb roof plate" EXACT [OBOL:automatic] synonym: "bulb roofplate" EXACT [OBOL:automatic] synonym: "medulla oblongata roof plate" EXACT [OBOL:automatic] synonym: "medulla oblongata roofplate" EXACT [OBOL:automatic] synonym: "medulla oblonmgata roof plate" EXACT [OBOL:automatic] synonym: "medulla oblonmgata roofplate" EXACT [OBOL:automatic] synonym: "metepencephalon roof plate" EXACT [OBOL:automatic] synonym: "metepencephalon roofplate" EXACT [OBOL:automatic] synonym: "roof plate of bulb" EXACT [OBOL:automatic] synonym: "roof plate of medulla oblonmgata" EXACT [OBOL:automatic] synonym: "roof plate of metepencephalon" EXACT [OBOL:automatic] synonym: "roofplate of bulb" EXACT [OBOL:automatic] synonym: "roofplate of medulla oblongata" EXACT [OBOL:automatic] synonym: "roofplate of medulla oblonmgata" EXACT [OBOL:automatic] synonym: "roofplate of metepencephalon" EXACT [OBOL:automatic] xref: EHDAA:7614 xref: EHDAA2:0001099 xref: OG:0000776 is_a: UBERON:0003298 ! implied link automatically realized ! roof plate of neural tube relationship: part_of UBERON:0001896 relationship: part_of UBERON:0003054 intersection_of: UBERON:0000479 ! tissue intersection_of: part_of UBERON:0001896 ! medulla oblongata intersection_of: part_of UBERON:0003054 ! roof plate [Term] id: UBERON:0003304 name: blood island of mesoderm def: "A blood island that is part of a mesoderm [Obol]." [OBOL:automatic] synonym: "mesoderm blood island" EXACT [OBOL:automatic] xref: EHDAA:170 xref: EHDAA2:0003241 xref: EMAPA:16115 is_a: UBERON:0003061 ! implied link automatically realized ! blood island relationship: part_of UBERON:0000926 intersection_of: UBERON:0003061 ! blood island intersection_of: part_of UBERON:0000926 ! mesoderm [Term] id: UBERON:0003305 name: blood island of mesenchyme def: "A blood island that is part of a mesenchyme [Obol]." [OBOL:automatic] synonym: "mesenchyme blood island" EXACT [OBOL:automatic] xref: EHDAA:207 xref: EMAPA:16268 is_a: UBERON:0003061 ! implied link automatically realized ! blood island relationship: part_of UBERON:0003104 intersection_of: UBERON:0003061 ! blood island intersection_of: part_of UBERON:0003104 ! mesenchyme [Term] id: UBERON:0003306 name: floor plate of neural tube def: "A floor plate that is part of a neural tube [Obol]." [OBOL:automatic] comment: Note that although 'floor plate' is classically defined as being located on the neural tube, in many AOs the floor plate continues post-embryonically after the neural tube has ceased to exist. We introduce this class for the neural tube specific structure subset: vertebrate_core synonym: "floor plate neural tube" EXACT [ZFA:0001434] synonym: "floorplate of neural tube" EXACT [OBOL:automatic] synonym: "neural tube floor plate" EXACT [OBOL:automatic] synonym: "neural tube floorplate" EXACT [OBOL:automatic] xref: EFO:0003688 xref: EHDAA:2871 xref: EHDAA:910 xref: EHDAA2:0001256 xref: EMAPA:16165 xref: EMAPA:16531 xref: OG:0000300 xref: ZFA:0001434 is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system is_a: UBERON:0000481 ! implied link automatically realized ! multi-tissue structure is_a: UBERON:0002050 ! implied link automatically realized ! embryonic structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001049 relationship: part_of UBERON:0003079 intersection_of: UBERON:0000481 ! multi-tissue structure intersection_of: part_of UBERON:0001049 ! neural tube intersection_of: part_of UBERON:0003079 ! floor plate [Term] id: UBERON:0003307 name: floor plate of midbrain def: "A floor plate that is part of a midbrain [Obol]." [OBOL:automatic] subset: vertebrate_core synonym: "floor plate midbrain region" EXACT [ZFA:0001677] synonym: "floorplate of midbrain" EXACT [OBOL:automatic] synonym: "midbrain floor plate" EXACT [OBOL:automatic] synonym: "midbrain floorplate" EXACT [OBOL:automatic] xref: EHDAA:3698 xref: EHDAA2:0001106 xref: EHDAA2:0001164 xref: EMAPA:16975 xref: OG:0000780 xref: ZFA:0001677 is_a: UBERON:0000481 ! implied link automatically realized ! multi-tissue structure is_a: UBERON:0002050 ! implied link automatically realized ! embryonic structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001891 relationship: part_of UBERON:0003079 intersection_of: UBERON:0000481 ! multi-tissue structure intersection_of: part_of UBERON:0001891 ! midbrain intersection_of: part_of UBERON:0003079 ! floor plate [Term] id: UBERON:0003308 name: floor plate of telencephalon def: "A floor plate that is part of a telencephalon [Obol]." [OBOL:automatic] subset: vertebrate_core synonym: "floor plate telencephalic region" EXACT [ZFA:0000914] synonym: "floorplate of telencephalon" EXACT [OBOL:automatic] synonym: "floorplate telencephalon" EXACT [ZFA:0000914] synonym: "telencephalon floor plate" EXACT [OBOL:automatic] synonym: "telencephalon floorplate" EXACT [OBOL:automatic] xref: EHDAA:3498 xref: EHDAA2:0001983 xref: EMAPA:16655 xref: OG:0000783 xref: ZFA:0000914 is_a: UBERON:0000481 ! implied link automatically realized ! multi-tissue structure is_a: UBERON:0002050 ! implied link automatically realized ! embryonic structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001893 relationship: part_of UBERON:0003079 intersection_of: UBERON:0000481 ! multi-tissue structure intersection_of: part_of UBERON:0001893 ! telencephalon intersection_of: part_of UBERON:0003079 ! floor plate [Term] id: UBERON:0003309 name: floor plate of diencephalon def: "A floor plate that is part of a diencephalon [Obol]." [OBOL:automatic] subset: vertebrate_core synonym: "between brain floor plate" EXACT [OBOL:automatic] synonym: "between brain floorplate" EXACT [OBOL:automatic] synonym: "diencephalon floor plate" EXACT [OBOL:automatic] synonym: "diencephalon floorplate" EXACT [OBOL:automatic] synonym: "floor plate diencephalic region" EXACT [ZFA:0000871] synonym: "floor plate of between brain" EXACT [OBOL:automatic] synonym: "floor plate of interbrain" EXACT [OBOL:automatic] synonym: "floor plate of mature diencephalon" EXACT [OBOL:automatic] synonym: "floorplate diencephalon" EXACT [ZFA:0000871] synonym: "floorplate of between brain" EXACT [OBOL:automatic] synonym: "floorplate of diencephalon" EXACT [OBOL:automatic] synonym: "floorplate of interbrain" EXACT [OBOL:automatic] synonym: "floorplate of mature diencephalon" EXACT [OBOL:automatic] synonym: "interbrain floor plate" EXACT [OBOL:automatic] synonym: "interbrain floorplate" EXACT [OBOL:automatic] synonym: "mature diencephalon floor plate" EXACT [OBOL:automatic] synonym: "mature diencephalon floorplate" EXACT [OBOL:automatic] xref: EHDAA:1975 xref: EHDAA:2651 xref: EHDAA:3480 xref: EHDAA2:0000388 xref: EMAPA:16645 xref: EMAPA:16903 xref: OG:0000782 xref: ZFA:0000871 is_a: UBERON:0000481 ! implied link automatically realized ! multi-tissue structure is_a: UBERON:0002050 ! implied link automatically realized ! embryonic structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001894 relationship: part_of UBERON:0003079 intersection_of: UBERON:0000481 ! multi-tissue structure intersection_of: part_of UBERON:0001894 ! diencephalon intersection_of: part_of UBERON:0003079 ! floor plate [Term] id: UBERON:0003310 name: floor plate of metencephalon def: "A floor plate that is part of a metencephalon [Obol]." [OBOL:automatic] synonym: "epencephalon-2 floor plate" EXACT [OBOL:automatic] synonym: "epencephalon-2 floorplate" EXACT [OBOL:automatic] synonym: "floor plate of epencephalon-2" EXACT [OBOL:automatic] synonym: "floorplate of epencephalon-2" EXACT [OBOL:automatic] synonym: "floorplate of metencephalon" EXACT [OBOL:automatic] synonym: "metencephalon floor plate" EXACT [OBOL:automatic] synonym: "metencephalon floorplate" EXACT [OBOL:automatic] xref: EHDAA:5500 xref: EHDAA2:0001158 xref: EMAPA:17093 xref: EMAPA:17100 xref: EMAPA:17258 xref: OG:0000784 is_a: UBERON:0000481 ! implied link automatically realized ! multi-tissue structure is_a: UBERON:0002050 ! implied link automatically realized ! embryonic structure is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001895 relationship: part_of UBERON:0003079 intersection_of: UBERON:0000481 ! multi-tissue structure intersection_of: part_of UBERON:0001895 ! metencephalon intersection_of: part_of UBERON:0003079 ! floor plate [Term] id: UBERON:0003311 name: floor plate of medulla oblongata def: "A floor plate that is part of a medulla oblongata [Obol]." [OBOL:automatic] synonym: "bulb floor plate" EXACT [OBOL:automatic] synonym: "bulb floorplate" EXACT [OBOL:automatic] synonym: "floor plate of bulb" EXACT [OBOL:automatic] synonym: "floor plate of medulla oblonmgata" EXACT [OBOL:automatic] synonym: "floor plate of metepencephalon" EXACT [OBOL:automatic] synonym: "floorplate of bulb" EXACT [OBOL:automatic] synonym: "floorplate of medulla oblongata" EXACT [OBOL:automatic] synonym: "floorplate of medulla oblonmgata" EXACT [OBOL:automatic] synonym: "floorplate of metepencephalon" EXACT [OBOL:automatic] synonym: "medulla oblongata floor plate" EXACT [OBOL:automatic] synonym: "medulla oblongata floorplate" EXACT [OBOL:automatic] synonym: "medulla oblonmgata floor plate" EXACT [OBOL:automatic] synonym: "medulla oblonmgata floorplate" EXACT [OBOL:automatic] synonym: "metepencephalon floor plate" EXACT [OBOL:automatic] synonym: "metepencephalon floorplate" EXACT [OBOL:automatic] xref: EHDAA:7590 xref: EHDAA2:0001097 xref: EMAPA:17551 xref: OG:0000786 is_a: UBERON:0000481 ! implied link automatically realized ! multi-tissue structure is_a: UBERON:0002050 ! implied link automatically realized ! embryonic structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001896 relationship: part_of UBERON:0003079 intersection_of: UBERON:0000481 ! multi-tissue structure intersection_of: part_of UBERON:0001896 ! medulla oblongata intersection_of: part_of UBERON:0003079 ! floor plate [Term] id: UBERON:0003312 name: mesenchyme of testis def: "A mesenchyme that is part of a testis [Obol]." [OBOL:automatic] synonym: "gonad of male genitalia mesenchyme" EXACT [OBOL:automatic] synonym: "gonad of male genitals mesenchyme" EXACT [OBOL:automatic] synonym: "gonad of male reproductive system mesenchyme" EXACT [OBOL:automatic] synonym: "gonada of male genitalia mesenchyme" EXACT [OBOL:automatic] synonym: "gonada of male genitals mesenchyme" EXACT [OBOL:automatic] synonym: "gonada of male reproductive system mesenchyme" EXACT [OBOL:automatic] synonym: "male genitalia gonad mesenchyme" EXACT [OBOL:automatic] synonym: "male genitalia gonada mesenchyme" EXACT [OBOL:automatic] synonym: "male genitals gonad mesenchyme" EXACT [OBOL:automatic] synonym: "male genitals gonada mesenchyme" EXACT [OBOL:automatic] synonym: "male reproductive system gonad mesenchyme" EXACT [OBOL:automatic] synonym: "male reproductive system gonada mesenchyme" EXACT [OBOL:automatic] synonym: "mesenchyme of gonad of male genitalia" EXACT [OBOL:automatic] synonym: "mesenchyme of gonad of male genitals" EXACT [OBOL:automatic] synonym: "mesenchyme of gonad of male reproductive system" EXACT [OBOL:automatic] synonym: "mesenchyme of gonada of male genitalia" EXACT [OBOL:automatic] synonym: "mesenchyme of gonada of male genitals" EXACT [OBOL:automatic] synonym: "mesenchyme of gonada of male reproductive system" EXACT [OBOL:automatic] synonym: "mesenchyme of male genitalia gonad" EXACT [OBOL:automatic] synonym: "mesenchyme of male genitalia gonada" EXACT [OBOL:automatic] synonym: "mesenchyme of male genitals gonad" EXACT [OBOL:automatic] synonym: "mesenchyme of male genitals gonada" EXACT [OBOL:automatic] synonym: "mesenchyme of male reproductive system gonad" EXACT [OBOL:automatic] synonym: "mesenchyme of male reproductive system gonada" EXACT [OBOL:automatic] synonym: "testis mesenchyme" EXACT [OBOL:automatic] xref: EHDAA:8150 xref: EHDAA2:0002010 xref: OG:0001442 is_a: UBERON:0003855 ! implied link automatically realized ! gonad mesenchyme relationship: part_of UBERON:0000473 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0000473 ! testis [Term] id: UBERON:0003314 name: eye mesenchyme comment: todo - change mesenchyme relationships to precursor_of synonym: "mesenchyme of eye" EXACT [OBOL:automatic] xref: EHDAA:2910 xref: EHDAA2:0000485 xref: EMAPA:16324 xref: EMAPA:16673 xref: EMAPA:17833 xref: EMAPA:17836 xref: OG:0001084 is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0000019 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0000019 ! camera-type eye relationship: develops_from UBERON:0009920 {source="EHDAA2"} ! optic neural crest [Term] id: UBERON:0003315 name: mesenchyme of ovary def: "A mesenchyme that is part of a ovary [Obol]." [OBOL:automatic] synonym: "female reproductive system gonad mesenchyme" EXACT [OBOL:automatic] synonym: "female reproductive system gonada mesenchyme" EXACT [OBOL:automatic] synonym: "gonad of female reproductive system mesenchyme" EXACT [OBOL:automatic] synonym: "gonada of female reproductive system mesenchyme" EXACT [OBOL:automatic] synonym: "mesenchyme of female reproductive system gonad" EXACT [OBOL:automatic] synonym: "mesenchyme of female reproductive system gonada" EXACT [OBOL:automatic] synonym: "mesenchyme of gonad of female reproductive system" EXACT [OBOL:automatic] synonym: "mesenchyme of gonada of female reproductive system" EXACT [OBOL:automatic] synonym: "ovary mesenchyme" EXACT [OBOL:automatic] xref: EHDAA:8128 xref: EHDAA2:0001362 xref: OG:0001441 is_a: UBERON:0003855 ! implied link automatically realized ! gonad mesenchyme relationship: part_of UBERON:0000992 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0000992 ! female gonad [Term] id: UBERON:0003316 name: mesenchyme of yolk sac def: "A mesenchyme that is part of a yolk sac [Obol]." [OBOL:automatic] synonym: "yolk sac mesenchyme" EXACT [OBOL:automatic] xref: EHDAA:205 xref: EHDAA2:0002216 xref: EMAPA:16267 xref: OG:0000503 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme relationship: part_of UBERON:0001040 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001040 ! yolk sac [Term] id: UBERON:0003317 name: mesenchyme of incisor def: "A mesenchyme that is part of a incisor tooth [Obol]." [OBOL:automatic] synonym: "incisor mesenchyme" EXACT [OBOL:automatic] synonym: "incisor tooth mesenchyme" EXACT [OBOL:automatic] synonym: "mesenchyme of incisor tooth" EXACT [OBOL:automatic] xref: EHDAA:8015 xref: EHDAA:8051 xref: EMAPA:17920 xref: EMAPA:17941 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme relationship: part_of UBERON:0001098 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001098 ! incisor tooth [Term] id: UBERON:0003318 name: mesenchyme of elbow def: "A mesenchyme that is part of a elbow [Obol]." [OBOL:automatic] synonym: "cubital region mesenchyme" EXACT [OBOL:automatic] synonym: "elbow mesenchyme" EXACT [OBOL:automatic] synonym: "mesenchyme of cubital region" EXACT [OBOL:automatic] xref: EHDAA:4170 xref: EHDAA:6216 xref: EHDAA2:0000432 xref: EMAPA:17416 xref: OG:0001075 is_a: UBERON:0003859 ! implied link automatically realized ! forelimb mesenchyme relationship: part_of UBERON:0001461 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001461 ! elbow [Term] id: UBERON:0003319 name: mesenchyme of carpal region def: "A mesenchyme that is part of a wrist [Obol]." [OBOL:automatic] synonym: "carpal region mesenchyme" EXACT [OBOL:automatic] synonym: "mesenchyme of wrist" EXACT [OBOL:automatic] synonym: "wrist mesenchyme" EXACT [OBOL:automatic] xref: EHDAA:5200 xref: EHDAA2:0000220 is_a: UBERON:0003859 ! implied link automatically realized ! forelimb mesenchyme relationship: part_of UBERON:0001462 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001462 ! wrist [Term] id: UBERON:0003320 name: mesenchyme of hip def: "A mesenchyme that is part of a hip [Obol]." [OBOL:automatic] synonym: "hip mesenchyme" EXACT [OBOL:automatic] synonym: "hip region mesenchyme" EXACT [OBOL:automatic] synonym: "mesenchyme of hip region" EXACT [OBOL:automatic] synonym: "mesenchyme of regio coxae" EXACT [OBOL:automatic] synonym: "regio coxae mesenchyme" EXACT [OBOL:automatic] xref: EHDAA:5157 xref: EHDAA:6182 xref: EHDAA2:0000786 xref: EMAPA:17492 xref: OG:0001029 is_a: UBERON:0009749 ! implied link automatically realized ! limb mesenchyme relationship: part_of UBERON:0001464 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001464 ! hip [Term] id: UBERON:0003321 name: mesenchyme of knee def: "A mesenchyme that is part of a knee [Obol]." [OBOL:automatic] synonym: "knee mesenchyme" EXACT [OBOL:automatic] xref: EHDAA:5163 xref: EHDAA:6188 xref: EHDAA2:0000898 xref: EMAPA:17495 xref: OG:0001070 is_a: UBERON:0003860 ! implied link automatically realized ! hindlimb mesenchyme relationship: part_of UBERON:0001465 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001465 ! knee [Term] id: UBERON:0003322 name: mesenchyme of shoulder def: "A mesenchyme that is part of a shoulder [Obol]." [OBOL:automatic] synonym: "shoulder mesenchyme" EXACT [OBOL:automatic] xref: EHDAA:4184 xref: EHDAA:6232 xref: EHDAA2:0001837 xref: EMAPA:17423 xref: OG:0001035 is_a: UBERON:0003859 ! implied link automatically realized ! forelimb mesenchyme relationship: part_of UBERON:0001467 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001467 ! shoulder [Term] id: UBERON:0003323 name: mesenchyme of upper jaw def: "A mesenchyme that is part of a upper jaw [Obol]." [OBOL:automatic] synonym: "mesenchyme of palatoquadrate arch" EXACT [OBOL:automatic] synonym: "palatoquadrate arch mesenchyme" EXACT [OBOL:automatic] synonym: "upper jaw mesenchyme" EXACT [OBOL:automatic] xref: EHDAA:8031 xref: EHDAA2:0002124 xref: EMAPA:17929 xref: OG:0001099 is_a: UBERON:0007213 ! implied link automatically realized ! mesenchyme derived from head neural crest relationship: part_of UBERON:0001709 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001709 ! upper jaw [Term] id: UBERON:0003324 name: mesenchyme of lower jaw def: "A mesenchyme that is part of a lower jaw [Obol]." [OBOL:automatic] synonym: "lower jaw mesenchyme" EXACT [OBOL:automatic] synonym: "mesenchyme of ventral mandibular arch" EXACT [OBOL:automatic] synonym: "ventral mandibular arch mesenchyme" EXACT [OBOL:automatic] xref: EHDAA:8003 xref: EHDAA2:0001024 xref: EMAPA:17916 xref: OG:0001069 is_a: UBERON:0007213 ! implied link automatically realized ! mesenchyme derived from head neural crest relationship: part_of UBERON:0001710 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001710 ! lower jaw [Term] id: UBERON:0003325 name: mesenchyme of pinna def: "A mesenchyme that is part of a pinna [Obol]." [OBOL:automatic] synonym: "auricle mesenchyme" EXACT [OBOL:automatic] synonym: "auricle of ear mesenchyme" EXACT [OBOL:automatic] synonym: "auricle of external ear mesenchyme" EXACT [OBOL:automatic] synonym: "auricula (auris externa) mesenchyme" EXACT [OBOL:automatic] synonym: "auricula mesenchyme" EXACT [OBOL:automatic] synonym: "mesenchyme of auricle" EXACT [OBOL:automatic] synonym: "mesenchyme of auricle of ear" EXACT [OBOL:automatic] synonym: "mesenchyme of auricle of external ear" EXACT [OBOL:automatic] synonym: "mesenchyme of auricula" EXACT [OBOL:automatic] synonym: "mesenchyme of auricula (auris externa)" EXACT [OBOL:automatic] synonym: "mesenchyme of pinna of ear" EXACT [OBOL:automatic] synonym: "pinna mesenchyme" EXACT [OBOL:automatic] synonym: "pinna of ear mesenchyme" EXACT [OBOL:automatic] xref: EHDAA:8981 xref: EHDAA2:0001469 xref: EMAPA:17591 xref: OG:0000747 is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme relationship: part_of UBERON:0001757 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001757 ! pinna [Term] id: UBERON:0003326 name: mesenchyme of mammary gland synonym: "lactiferous gland mesenchyme" EXACT [OBOL:automatic] synonym: "lobe of breast mesenchyme" EXACT [OBOL:automatic] synonym: "lobe of mammary gland mesenchyme" EXACT [OBOL:automatic] synonym: "mammary gland mesenchyme" EXACT [OBOL:automatic] synonym: "mammary mesenchyme" EXACT [] synonym: "mesenchyme of lactiferous gland" EXACT [OBOL:automatic] synonym: "mesenchyme of lobe of breast" EXACT [OBOL:automatic] synonym: "mesenchyme of lobe of mammary gland" EXACT [OBOL:automatic] xref: EHDAA:6528 xref: EHDAA2:0001058 xref: EMAPA:17761 xref: OG:0001087 is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001911 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001911 ! mammary gland [Term] id: UBERON:0003327 name: mesenchyme of forearm def: "A mesenchyme that is part of a lower arm [Obol]." [OBOL:automatic] synonym: "antebrachial region mesenchyme" EXACT [OBOL:automatic] synonym: "arm middle limb segment mesenchyme" EXACT [OBOL:automatic] synonym: "arm zeugopod mesenchyme" EXACT [OBOL:automatic] synonym: "brachial region middle limb segment mesenchyme" EXACT [OBOL:automatic] synonym: "brachial region zeugopod mesenchyme" EXACT [OBOL:automatic] synonym: "intermediate segment of free upper limb mesenchyme" EXACT [OBOL:automatic] synonym: "lower arm mesenchyme" EXACT [OBOL:automatic] synonym: "lower segment of arm mesenchyme" EXACT [OBOL:automatic] synonym: "mesenchyme of antebrachial region" EXACT [OBOL:automatic] synonym: "mesenchyme of arm middle limb segment" EXACT [OBOL:automatic] synonym: "mesenchyme of arm zeugopod" EXACT [OBOL:automatic] synonym: "mesenchyme of brachial region middle limb segment" EXACT [OBOL:automatic] synonym: "mesenchyme of brachial region zeugopod" EXACT [OBOL:automatic] synonym: "mesenchyme of intermediate segment of free upper limb" EXACT [OBOL:automatic] synonym: "mesenchyme of lower arm" EXACT [OBOL:automatic] synonym: "mesenchyme of lower segment of arm" EXACT [OBOL:automatic] synonym: "mesenchyme of middle limb segment of arm" EXACT [OBOL:automatic] synonym: "mesenchyme of middle limb segment of brachial region" EXACT [OBOL:automatic] synonym: "mesenchyme of middle limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "mesenchyme of proximal segment of free upper limb middle limb segment" EXACT [OBOL:automatic] synonym: "mesenchyme of proximal segment of free upper limb zeugopod" EXACT [OBOL:automatic] synonym: "mesenchyme of zeugopod of arm" EXACT [OBOL:automatic] synonym: "mesenchyme of zeugopod of brachial region" EXACT [OBOL:automatic] synonym: "mesenchyme of zeugopod of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "middle limb segment of arm mesenchyme" EXACT [OBOL:automatic] synonym: "middle limb segment of brachial region mesenchyme" EXACT [OBOL:automatic] synonym: "middle limb segment of proximal segment of free upper limb mesenchyme" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb middle limb segment mesenchyme" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb zeugopod mesenchyme" EXACT [OBOL:automatic] synonym: "zeugopod of arm mesenchyme" EXACT [OBOL:automatic] synonym: "zeugopod of brachial region mesenchyme" EXACT [OBOL:automatic] synonym: "zeugopod of proximal segment of free upper limb mesenchyme" EXACT [OBOL:automatic] xref: EHDAA:4176 xref: EHDAA:6222 xref: EHDAA2:0000555 xref: EMAPA:17419 xref: OG:0000504 is_a: UBERON:0003859 ! implied link automatically realized ! forelimb mesenchyme relationship: part_of UBERON:0002386 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0002386 ! forelimb zeugopod relationship: part_of UBERON:0002386 {source="EMAPA"} ! forelimb zeugopod [Term] id: UBERON:0003328 name: mesenchyme of footplate xref: EHDAA:5149 xref: EHDAA:6172 xref: EHDAA2:0000549 xref: EMAPA:17252 is_a: UBERON:0003412 ! implied link automatically realized ! hindlimb bud mesenchyme relationship: part_of UBERON:0006871 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0006871 ! footplate [Term] id: UBERON:0003329 name: submucosa of anal canal def: "A submucosa that is part of an anal canal [Obol]." [OBOL:automatic] synonym: "anal canal submucosa" EXACT [OBOL:automatic] synonym: "anal canal viewed anatomically submucosa" EXACT [OBOL:automatic] synonym: "anal region submucosa" EXACT [OBOL:automatic] synonym: "anatomical anal canal submucosa" EXACT [OBOL:automatic] synonym: "submucosa of anal canal viewed anatomically" EXACT [OBOL:automatic] synonym: "submucosa of anal region" EXACT [OBOL:automatic] synonym: "submucosa of anatomical anal canal" EXACT [OBOL:automatic] xref: EMAPA:27535 xref: FMA:85399 xref: SCTID:7892006 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001208 ! implied link automatically realized ! submucosa of large intestine relationship: part_of UBERON:0000159 intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0000159 ! anal canal [Term] id: UBERON:0003330 name: submucosa of rectum def: "A submucosa that is part of a rectum [Obol]." [OBOL:automatic] synonym: "rectal submucosa" EXACT [FMA:15034] synonym: "rectum submucosa" EXACT [OBOL:automatic] xref: EMAPA:27083 xref: EMAPA:27323 xref: FMA:15034 xref: SCTID:71683001 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001208 ! implied link automatically realized ! submucosa of large intestine relationship: part_of UBERON:0001052 intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0001052 ! rectum [Term] id: UBERON:0003331 name: submucosa of colon def: "A submucosa that is part of a colon [Obol]." [OBOL:automatic] synonym: "colon submucosa" EXACT [OBOL:automatic] synonym: "colonic submucosa" EXACT [FMA:14985] synonym: "large bowel submucosa" EXACT [OBOL:automatic] synonym: "submucosa of large bowel" EXACT [OBOL:automatic] xref: EMAPA:27379 xref: FMA:14985 xref: SCTID:61647009 is_a: UBERON:0001208 ! implied link automatically realized ! submucosa of large intestine relationship: part_of UBERON:0001155 intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0001155 ! colon [Term] id: UBERON:0003332 name: submucosa of duodenum def: "A submucosa that is part of a duodenum [Obol]." [OBOL:automatic] synonym: "doudenal submucosa" EXACT [FMA:14943] synonym: "duodenal submucosa" EXACT [FMA:14943] synonym: "duodenum submucosa" EXACT [OBOL:automatic] xref: EMAPA:27239 xref: FMA:14943 xref: SCTID:76519004 is_a: UBERON:0001205 ! implied link automatically realized ! submucosa of small intestine relationship: part_of UBERON:0002114 intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0002114 ! duodenum [Term] id: UBERON:0003333 name: submucosa of jejunum def: "A submucosa that is part of a jejunum [Obol]." [OBOL:automatic] synonym: "jejunal submucosa" EXACT [FMA:14950] synonym: "jejunum submucosa" EXACT [OBOL:automatic] xref: EMAPA:27111 xref: EMAPA:27351 xref: FMA:14950 xref: SCTID:70192009 is_a: UBERON:0001205 ! implied link automatically realized ! submucosa of small intestine relationship: part_of UBERON:0002115 intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0002115 ! jejunum [Term] id: UBERON:0003334 name: serosa of rectum def: "A serous membrane that is part of a rectum [Obol]." [OBOL:automatic] synonym: "rectal serosa" EXACT [FMA:15039] synonym: "rectum serosa" EXACT [OBOL:automatic] synonym: "rectum serous membrane" EXACT [OBOL:automatic] synonym: "serous membrane of rectum" EXACT [OBOL:automatic] synonym: "visceral peritoneum of rectum" EXACT [FMA:15039] xref: EMAPA:27087 xref: EMAPA:27331 xref: FMA:15039 is_a: UBERON:0001209 ! implied link automatically realized ! serosa of large intestine relationship: part_of UBERON:0001052 intersection_of: UBERON:0000042 ! serous membrane intersection_of: part_of UBERON:0001052 ! rectum [Term] id: UBERON:0003335 name: serosa of colon def: "A serous membrane that is part of a colon [Obol]." [OBOL:automatic] synonym: "colon serosa" EXACT [OBOL:automatic] synonym: "colon serous membrane" EXACT [OBOL:automatic] synonym: "colonic serosa" EXACT [FMA:14990] synonym: "large bowel serosa" EXACT [OBOL:automatic] synonym: "large bowel serous membrane" EXACT [OBOL:automatic] synonym: "serosa of large bowel" EXACT [OBOL:automatic] synonym: "serous membrane of colon" EXACT [OBOL:automatic] synonym: "serous membrane of large bowel" EXACT [OBOL:automatic] synonym: "visceral peritoneum of colon" EXACT [FMA:14990] xref: EMAPA:27387 xref: FMA:14990 xref: SCTID:90132000 is_a: UBERON:0001209 ! implied link automatically realized ! serosa of large intestine relationship: part_of UBERON:0001155 intersection_of: UBERON:0000042 ! serous membrane intersection_of: part_of UBERON:0001155 ! colon [Term] id: UBERON:0003336 name: serosa of duodenum def: "A serous membrane that is part of a duodenum [Obol]." [OBOL:automatic] synonym: "doudenal serosa" EXACT [FMA:14948] synonym: "duodenal serosa" EXACT [FMA:14948] synonym: "duodenum serosa" EXACT [OBOL:automatic] synonym: "duodenum serous membrane" EXACT [OBOL:automatic] synonym: "serous membrane of duodenum" EXACT [OBOL:automatic] synonym: "visceral peritoneum of duodenum" EXACT [FMA:14948] xref: EMAPA:27247 xref: FMA:14948 xref: SCTID:1236009 is_a: UBERON:0001206 ! implied link automatically realized ! serosa of small intestine relationship: part_of UBERON:0002114 intersection_of: UBERON:0000042 ! serous membrane intersection_of: part_of UBERON:0002114 ! duodenum [Term] id: UBERON:0003337 name: serosa of jejunum def: "A serous membrane that is part of a jejunum [Obol]." [OBOL:automatic] synonym: "jejunal serosa" EXACT [FMA:14955] synonym: "jejunum serosa" EXACT [OBOL:automatic] synonym: "jejunum serous membrane" EXACT [OBOL:automatic] synonym: "serous membrane of jejunum" EXACT [OBOL:automatic] synonym: "visceral peritoneum of jejunum" EXACT [FMA:14955] xref: EMAPA:27115 xref: EMAPA:27359 xref: FMA:14955 is_a: UBERON:0001206 ! implied link automatically realized ! serosa of small intestine relationship: part_of UBERON:0002115 intersection_of: UBERON:0000042 ! serous membrane intersection_of: part_of UBERON:0002115 ! jejunum [Term] id: UBERON:0003338 name: ganglion of peripheral nervous system def: "A ganglion that is part of a peripheral nervous system [Obol]." [OBOL:automatic] synonym: "peripheral nervous system ganglion" EXACT [OBOL:automatic] xref: BTO:0001123 xref: EMAPA:18371 xref: EV:0100372 xref: MA:0001161 is_a: UBERON:0000045 ! implied link automatically realized ! ganglion relationship: part_of UBERON:0000010 intersection_of: UBERON:0000045 ! ganglion intersection_of: part_of UBERON:0000010 ! peripheral nervous system [Term] id: UBERON:0003339 name: ganglion of central nervous system def: "A ganglion that is part of a central nervous system [Obol]." [OBOL:automatic] comment: this has no subclasses in FMA. In EHDAA2 it has only the cranial ganglia synonym: "central nervous system ganglion" EXACT [OBOL:automatic] synonym: "ganglion of neuraxis" EXACT [OBOL:automatic] synonym: "neuraxis ganglion" EXACT [OBOL:automatic] xref: EHDAA2:0000227 xref: EMAPA:16658 xref: FMA:83843 is_a: UBERON:0000045 ! implied link automatically realized ! ganglion relationship: part_of UBERON:0001017 intersection_of: UBERON:0000045 ! ganglion intersection_of: part_of UBERON:0001017 ! central nervous system [Term] id: UBERON:0003340 name: urethra of urogenital sinus xref: EMAPA:30891 is_obsolete: true [Term] id: UBERON:0003341 name: urethra of urinary system xref: EMAPA:30901 is_obsolete: true [Term] id: UBERON:0003342 name: mucosa of anal canal def: "A mucosa that is part of an anal canal [Obol]." [OBOL:automatic] synonym: "anal canal mucosa" EXACT [OBOL:automatic] synonym: "anal canal mucosa of organ" EXACT [OBOL:automatic] synonym: "anal canal mucous membrane" EXACT [OBOL:automatic] synonym: "anal canal organ mucosa" EXACT [OBOL:automatic] synonym: "anal canal viewed anatomically mucosa" EXACT [OBOL:automatic] synonym: "anal canal viewed anatomically mucosa of organ" EXACT [OBOL:automatic] synonym: "anal canal viewed anatomically mucous membrane" EXACT [OBOL:automatic] synonym: "anal canal viewed anatomically organ mucosa" EXACT [OBOL:automatic] synonym: "anal mucosa" EXACT [FMA:74654] synonym: "anal mucous membrane" EXACT [FMA:74654] synonym: "anal region mucosa" EXACT [OBOL:automatic] synonym: "anal region mucosa of organ" EXACT [OBOL:automatic] synonym: "anal region mucous membrane" EXACT [OBOL:automatic] synonym: "anal region organ mucosa" EXACT [OBOL:automatic] synonym: "anatomical anal canal mucosa" EXACT [OBOL:automatic] synonym: "anatomical anal canal mucosa of organ" EXACT [OBOL:automatic] synonym: "anatomical anal canal mucous membrane" EXACT [OBOL:automatic] synonym: "anatomical anal canal organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of anal canal viewed anatomically" EXACT [OBOL:automatic] synonym: "mucosa of anal region" EXACT [OBOL:automatic] synonym: "mucosa of anatomical anal canal" EXACT [OBOL:automatic] synonym: "mucosa of organ of anal canal" EXACT [OBOL:automatic] synonym: "mucosa of organ of anal canal viewed anatomically" EXACT [OBOL:automatic] synonym: "mucosa of organ of anal region" EXACT [OBOL:automatic] synonym: "mucosa of organ of anatomical anal canal" EXACT [OBOL:automatic] synonym: "mucous membrane of anal canal" EXACT [OBOL:automatic] synonym: "mucous membrane of anal canal viewed anatomically" EXACT [OBOL:automatic] synonym: "mucous membrane of anal region" EXACT [OBOL:automatic] synonym: "mucous membrane of anatomical anal canal" EXACT [OBOL:automatic] synonym: "organ mucosa of anal canal" EXACT [OBOL:automatic] synonym: "organ mucosa of anal canal viewed anatomically" EXACT [OBOL:automatic] synonym: "organ mucosa of anal region" EXACT [OBOL:automatic] synonym: "organ mucosa of anatomical anal canal" EXACT [OBOL:automatic] xref: EMAPA:27531 xref: FMA:74654 xref: ncithesaurus:Anal_Mucosa xref: SCTID:362170004 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001207 ! implied link automatically realized ! mucosa of large intestine relationship: part_of UBERON:0000159 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0000159 ! anal canal [Term] id: UBERON:0003343 name: mucosa of oral region def: "A mucosa that is part of a oral opening [Obol]." [OBOL:automatic] synonym: "mucosa of oral opening" EXACT [OBOL:automatic] synonym: "mucosa of oral part of face" EXACT [OBOL:automatic] synonym: "mucosa of organ of oral opening" EXACT [OBOL:automatic] synonym: "mucosa of organ of oral part of face" EXACT [OBOL:automatic] synonym: "mucosa of organ of oral region" EXACT [OBOL:automatic] synonym: "mucosa of organ of subdivision of mouth" EXACT [OBOL:automatic] synonym: "mucosa of subdivision of mouth" EXACT [OBOL:automatic] synonym: "mucous membrane of oral opening" EXACT [OBOL:automatic] synonym: "mucous membrane of oral part of face" EXACT [OBOL:automatic] synonym: "mucous membrane of oral region" EXACT [OBOL:automatic] synonym: "mucous membrane of subdivision of mouth" EXACT [OBOL:automatic] synonym: "oral opening mucosa" EXACT [OBOL:automatic] synonym: "oral opening mucosa of organ" EXACT [OBOL:automatic] synonym: "oral opening mucous membrane" EXACT [OBOL:automatic] synonym: "oral opening organ mucosa" EXACT [OBOL:automatic] synonym: "oral part of face mucosa" EXACT [OBOL:automatic] synonym: "oral part of face mucosa of organ" EXACT [OBOL:automatic] synonym: "oral part of face mucous membrane" EXACT [OBOL:automatic] synonym: "oral part of face organ mucosa" EXACT [OBOL:automatic] synonym: "oral region mucosa" EXACT [OBOL:automatic] synonym: "oral region mucosa of organ" EXACT [OBOL:automatic] synonym: "oral region mucous membrane" EXACT [OBOL:automatic] synonym: "oral region organ mucosa" EXACT [OBOL:automatic] synonym: "organ mucosa of oral opening" EXACT [OBOL:automatic] synonym: "organ mucosa of oral part of face" EXACT [OBOL:automatic] synonym: "organ mucosa of oral region" EXACT [OBOL:automatic] synonym: "organ mucosa of subdivision of mouth" EXACT [OBOL:automatic] synonym: "subdivision of mouth mucosa" EXACT [OBOL:automatic] synonym: "subdivision of mouth mucosa of organ" EXACT [OBOL:automatic] synonym: "subdivision of mouth mucous membrane" EXACT [OBOL:automatic] synonym: "subdivision of mouth organ mucosa" EXACT [OBOL:automatic] xref: EMAPA:26937 is_a: UBERON:0003729 ! implied link automatically realized ! mouth mucosa is_a: UBERON:0004785 ! implied link automatically realized ! respiratory system mucosa relationship: part_of UBERON:0000166 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0000166 ! oral opening [Term] id: UBERON:0003346 name: mucosa of rectum def: "A mucosa that is part of a rectum [Obol]." [OBOL:automatic] synonym: "mucosa of organ of rectum" EXACT [OBOL:automatic] synonym: "mucous membrane of rectum" EXACT [OBOL:automatic] synonym: "organ mucosa of rectum" EXACT [OBOL:automatic] synonym: "rectal mucosa" EXACT [FMA:15033] synonym: "rectal mucous membrane" EXACT [FMA:15033] synonym: "rectum mucosa" EXACT [OBOL:automatic] synonym: "rectum mucosa of organ" EXACT [OBOL:automatic] synonym: "rectum mucous membrane" EXACT [OBOL:automatic] synonym: "rectum organ mucosa" EXACT [OBOL:automatic] xref: EMAPA:27081 xref: EMAPA:27319 xref: FMA:15033 xref: SCTID:362167003 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001207 ! implied link automatically realized ! mucosa of large intestine relationship: part_of UBERON:0001052 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001052 ! rectum [Term] id: UBERON:0003350 name: epithelium of mucosa def: "An epithelium that is part of a mucosa [Obol]." [OBOL:automatic] synonym: "epithelial tissue of mucosa" EXACT [OBOL:automatic] synonym: "epithelial tissue of mucosa of organ" EXACT [OBOL:automatic] synonym: "epithelial tissue of mucous membrane" EXACT [OBOL:automatic] synonym: "epithelial tissue of organ mucosa" EXACT [OBOL:automatic] synonym: "epithelium of mucosa of organ" EXACT [OBOL:automatic] synonym: "epithelium of mucous membrane" EXACT [OBOL:automatic] synonym: "epithelium of organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa epithelial tissue" EXACT [OBOL:automatic] synonym: "mucosa epithelium" EXACT [OBOL:automatic] synonym: "mucosa of organ epithelial tissue" EXACT [OBOL:automatic] synonym: "mucosa of organ epithelium" EXACT [OBOL:automatic] synonym: "mucous membrane epithelial tissue" EXACT [OBOL:automatic] synonym: "mucous membrane epithelium" EXACT [OBOL:automatic] synonym: "organ mucosa epithelial tissue" EXACT [OBOL:automatic] synonym: "organ mucosa epithelium" EXACT [OBOL:automatic] xref: EMAPA:18668 xref: EMAPA:18835 xref: EMAPA:18857 xref: EMAPA:18862 xref: EMAPA:18868 xref: EMAPA:18893 xref: EMAPA:18899 xref: EMAPA:18912 xref: EMAPA:18917 xref: EMAPA:18927 xref: EMAPA:18934 xref: EMAPA:18941 xref: EMAPA:19078 xref: EMAPA:26961 xref: EMAPA:26985 xref: EMAPA:27019 xref: EMAPA:27033 xref: EMAPA:27047 xref: EMAPA:27061 xref: EMAPA:27075 xref: EMAPA:27089 xref: EMAPA:27103 xref: EMAPA:27131 xref: EMAPA:27145 xref: EMAPA:27159 xref: EMAPA:27175 xref: EMAPA:27191 xref: EMAPA:27207 xref: EMAPA:27219 xref: EMAPA:27229 xref: EMAPA:27307 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium relationship: part_of UBERON:0000344 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000344 ! mucosa [Term] id: UBERON:0003351 name: pharyngeal epithelium def: "An epithelium that is part of a pharynx [Obol]." [OBOL:automatic] subset: vertebrate_core synonym: "epithelial tissue of pharynx" EXACT [OBOL:automatic] synonym: "epithelium of pharynx" EXACT [OBOL:automatic] synonym: "pharynx epithelial tissue" EXACT [OBOL:automatic] synonym: "pharynx epithelium" EXACT [OBOL:automatic] xref: EHDAA2:0001460 xref: EMAPA:16708 xref: MA:0002725 xref: XAO:0003202 xref: ZFA:0001174 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000490 {source="ZFA"} ! unilaminar epithelium is_a: UBERON:0003929 ! implied link automatically realized ! gut epithelium is_a: UBERON:0004807 ! implied link automatically realized ! respiratory system epithelium relationship: part_of UBERON:0001042 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001042 ! chordate pharynx relationship: develops_from UBERON:0007690 {source="ZFA"} ! early pharyngeal endoderm relationship: part_of UBERON:0001042 {source="ZFA"} ! chordate pharynx [Term] id: UBERON:0003352 name: epithelium of midgut def: "For example the midgut epithelium of Wirenia argentea Odhner Mollusca, Solenogastres) is composed of two cell types: dorsal ciliary cells and digestive cells[BTO]." [BTO:0005053] synonym: "epithelial tissue of midgut" EXACT [OBOL:automatic] synonym: "midgut epithelial tissue" EXACT [OBOL:automatic] synonym: "midgut epithelium" EXACT [OBOL:automatic] synonym: "midgut epithelium" EXACT [BTO:0005053] xref: BTO:0005053 xref: EHDAA2:0001195 xref: EMAPA:16569 is_a: UBERON:0003929 ! implied link automatically realized ! gut epithelium relationship: part_of UBERON:0001045 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001045 ! midgut relationship: part_of UBERON:0001045 {source="BTO"} ! midgut [Term] id: UBERON:0003353 name: epithelium of hindgut def: "An epithelium that is part of a hindgut [Obol]." [OBOL:automatic] synonym: "epithelial tissue of hindgut" EXACT [OBOL:automatic] synonym: "hindgut epithelial tissue" EXACT [OBOL:automatic] synonym: "hindgut epithelium" EXACT [OBOL:automatic] xref: EHDAA2:0000782 xref: EMAPA:16717 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003929 ! implied link automatically realized ! gut epithelium relationship: part_of UBERON:0001046 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001046 ! hindgut [Term] id: UBERON:0003354 name: epithelium of rectum def: "An epithelium that is part of a rectum [Obol]." [OBOL:automatic] synonym: "epithelial tissue of rectum" EXACT [OBOL:automatic] synonym: "rectal epithelium" EXACT [FMA:17510] synonym: "rectum epithelial tissue" EXACT [OBOL:automatic] synonym: "rectum epithelium" EXACT [OBOL:automatic] xref: EHDAA2:0001594 xref: EMAPA:17898 xref: FMA:17510 xref: OG:0001037 xref: WBbt:0005800 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001278 ! implied link automatically realized ! epithelium of large intestine relationship: part_of UBERON:0001052 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001052 ! rectum [Term] id: UBERON:0003355 name: epithelium of incisor def: "An epithelium that is part of a incisor tooth [Obol]." [OBOL:automatic] synonym: "epithelial tissue of incisor" EXACT [OBOL:automatic] synonym: "epithelial tissue of incisor tooth" EXACT [OBOL:automatic] synonym: "epithelium of incisor tooth" EXACT [OBOL:automatic] synonym: "incisor epithelial tissue" EXACT [OBOL:automatic] synonym: "incisor epithelium" EXACT [OBOL:automatic] synonym: "incisor tooth epithelial tissue" EXACT [OBOL:automatic] synonym: "incisor tooth epithelium" EXACT [OBOL:automatic] xref: EMAPA:17919 xref: EMAPA:17940 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0003929 ! implied link automatically realized ! gut epithelium is_a: UBERON:0004807 ! implied link automatically realized ! respiratory system epithelium relationship: part_of UBERON:0001098 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001098 ! incisor tooth [Term] id: UBERON:0003356 name: epithelium of nasal septum def: "An epithelium that is part of a nasal septum [Obol]." [OBOL:automatic] synonym: "epithelial tissue of nasal septum" EXACT [OBOL:automatic] synonym: "nasal septum epithelial tissue" EXACT [OBOL:automatic] synonym: "nasal septum epithelium" EXACT [OBOL:automatic] xref: EMAPA:18442 is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0004807 ! implied link automatically realized ! respiratory system epithelium relationship: part_of UBERON:0001706 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001706 ! nasal septum [Term] id: UBERON:0003357 name: epithelium of tongue def: "An epithelium that is part of a tongue [Obol]." [OBOL:automatic] comment: examples: tongue squamous epithelium, keratined, non-keratinized and parakeratinized epithelium, as well as gustatory epithelium. Note that not all these subtypes are named in individual anatomy ontologies. synonym: "epithelial tissue of tongue" EXACT [OBOL:automatic] synonym: "lingual epithelium" RELATED [BTO:0000992] synonym: "tongue epithelial tissue" EXACT [OBOL:automatic] synonym: "tongue epithelium" EXACT [OBOL:automatic] xref: BTO:0000992 xref: EHDAA2:0004598 xref: EMAPA:17881 xref: EMAPA:18872 xref: MA:0001592 xref: ncithesaurus:Tongue_Epithelium is_a: UBERON:0003929 ! implied link automatically realized ! gut epithelium is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001723 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001723 ! tongue [Term] id: UBERON:0003358 name: epithelium of soft palate def: "An epithelium that is part of a soft palate [Obol]." [OBOL:automatic] synonym: "epithelial tissue of soft palate" EXACT [OBOL:automatic] synonym: "soft palate epithelial tissue" EXACT [OBOL:automatic] synonym: "soft palate epithelium" EXACT [OBOL:automatic] xref: EMAPA:18950 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0003235 ! implied link automatically realized ! epithelium of upper jaw is_a: UBERON:0003929 ! implied link automatically realized ! gut epithelium is_a: UBERON:0004807 ! implied link automatically realized ! respiratory system epithelium relationship: part_of UBERON:0001733 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001733 ! soft palate [Term] id: UBERON:0003359 name: epithelium of submandibular gland def: "An epithelium that is part of a submandibular gland [Obol]." [OBOL:automatic] synonym: "epithelial tissue of submandibular gland" EXACT [OBOL:automatic] synonym: "submandibular gland duct epithelium" RELATED [BTO:0004557] synonym: "submandibular gland epithelial tissue" EXACT [OBOL:automatic] synonym: "submandibular gland epithelium" EXACT [OBOL:automatic] xref: BTO:0004557 xref: EMAPA:18813 xref: OG:0000989 is_a: UBERON:0004809 ! implied link automatically realized ! salivary gland epithelium relationship: part_of UBERON:0001736 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001736 ! submandibular gland [Term] id: UBERON:0003360 name: epithelium of parotid gland def: "An epithelium that is part of a parotid gland [Obol]." [OBOL:automatic] synonym: "epithelial tissue of parotid gland" EXACT [OBOL:automatic] synonym: "epithelium of parotid" EXACT [OBOL:automatic] synonym: "epithelium of parotid gland" EXACT [OBOL:automatic] synonym: "parotid epithelial tissue" EXACT [OBOL:automatic] synonym: "parotid epithelium" EXACT [OBOL:automatic] synonym: "parotid gland duct epithelium" RELATED [BTO:0004555] synonym: "parotid gland epithelial tissue" EXACT [OBOL:automatic] synonym: "parotid gland epithelium" EXACT [OBOL:automatic] xref: BTO:0004555 xref: EMAPA:18538 xref: OG:0001434 is_a: UBERON:0004809 ! implied link automatically realized ! salivary gland epithelium relationship: part_of UBERON:0001831 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001831 ! parotid gland [Term] id: UBERON:0003361 name: epithelium of sublingual gland def: "An epithelium that is part of a sublingual gland [Obol]." [OBOL:automatic] synonym: "ductus sublingualis epithelial tissue" EXACT [OBOL:automatic] synonym: "ductus sublingualis epithelium" EXACT [OBOL:automatic] synonym: "epithelial tissue of ductus sublingualis" EXACT [OBOL:automatic] synonym: "epithelial tissue of Rivinus'gland" EXACT [OBOL:automatic] synonym: "epithelial tissue of sublingual gland" EXACT [OBOL:automatic] synonym: "epithelium of ductus sublingualis" EXACT [OBOL:automatic] synonym: "epithelium of Rivinus'gland" EXACT [OBOL:automatic] synonym: "Rivinus'gland epithelial tissue" EXACT [OBOL:automatic] synonym: "Rivinus'gland epithelium" EXACT [OBOL:automatic] synonym: "sublingual gland duct epithelium" RELATED [BTO:0004559] synonym: "sublingual gland epithelial tissue" EXACT [OBOL:automatic] synonym: "sublingual gland epithelium" EXACT [OBOL:automatic] xref: BTO:0004559 xref: EMAPA:18810 xref: OG:0001098 is_a: UBERON:0004809 ! implied link automatically realized ! salivary gland epithelium relationship: part_of UBERON:0001832 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001832 ! sublingual gland [Term] id: UBERON:0003362 name: epithelium of endolymphatic duct def: "An epithelium that is part of a endolymphatic duct [Obol]." [OBOL:automatic] synonym: "endolymphatic duct epithelial tissue" EXACT [OBOL:automatic] synonym: "endolymphatic duct epithelium" EXACT [OBOL:automatic] synonym: "epithelial tissue of endolymphatic duct" EXACT [OBOL:automatic] xref: EMAPA:18582 is_a: UBERON:0006937 ! implied link automatically realized ! inner ear epithelium relationship: part_of UBERON:0001860 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001860 ! endolymphatic duct [Term] id: UBERON:0003363 name: epithelium of ductus reuniens def: "An epithelium that is part of a ductus reuniens [Obol]." [OBOL:automatic] synonym: "ductus reuniens epithelial tissue" EXACT [OBOL:automatic] synonym: "ductus reuniens epithelium" EXACT [OBOL:automatic] synonym: "epithelial tissue of ductus reuniens" EXACT [OBOL:automatic] xref: EMAPA:17289 is_a: UBERON:0006937 ! implied link automatically realized ! inner ear epithelium relationship: part_of UBERON:0001861 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001861 ! ductus reuniens [Term] id: UBERON:0003364 name: epithelium of right lung def: "An epithelium that is part of a right lung [Obol]." [OBOL:automatic] synonym: "epithelial tissue of right lung" EXACT [OBOL:automatic] synonym: "right lung epithelial tissue" EXACT [OBOL:automatic] synonym: "right lung epithelium" EXACT [OBOL:automatic] xref: EMAPA:17663 is_a: UBERON:0000115 ! implied link automatically realized ! lung epithelium relationship: part_of UBERON:0002167 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002167 ! right lung [Term] id: UBERON:0003365 name: epithelium of left lung def: "An epithelium that is part of a left lung [Obol]." [OBOL:automatic] synonym: "epithelial tissue of left lung" EXACT [OBOL:automatic] synonym: "left lung epithelial tissue" EXACT [OBOL:automatic] synonym: "left lung epithelium" EXACT [OBOL:automatic] xref: EMAPA:17655 is_a: UBERON:0000115 ! implied link automatically realized ! lung epithelium relationship: part_of UBERON:0002168 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002168 ! left lung [Term] id: UBERON:0003366 name: epithelium of uterine horn def: "An epithelium that is part of a uterine horn [Obol]." [OBOL:automatic] synonym: "epithelial tissue of uterine horn" EXACT [OBOL:automatic] synonym: "uterine horn epithelial tissue" EXACT [OBOL:automatic] synonym: "uterine horn epithelium" EXACT [OBOL:automatic] xref: EMAPA:29030 is_a: UBERON:0006955 ! implied link automatically realized ! uterine epithelium relationship: part_of UBERON:0002247 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002247 ! uterine horn [Term] id: UBERON:0003367 name: epithelium of vomeronasal organ def: "An epithelium that is part of a vomeronasal organ [Obol]." [OBOL:automatic] synonym: "epithelial tissue of Jacobson's organ" EXACT [OBOL:automatic] synonym: "epithelial tissue of vomeronasal organ" EXACT [OBOL:automatic] synonym: "epithelium of Jacobson's organ" EXACT [OBOL:automatic] synonym: "Jacobson's organ epithelial tissue" EXACT [OBOL:automatic] synonym: "Jacobson's organ epithelium" EXACT [OBOL:automatic] synonym: "vomeronasal epithelium" EXACT [EHDAA2:0004102] synonym: "vomeronasal organ epithelial tissue" EXACT [OBOL:automatic] synonym: "vomeronasal organ epithelium" EXACT [OBOL:automatic] synonym: "vomeronasal organ sensory epithelium" EXACT [MA:0001328] xref: EHDAA2:0004102 xref: EMAPA:18444 xref: MA:0001328 is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium is_a: UBERON:0004807 ! implied link automatically realized ! respiratory system epithelium is_a: UBERON:0005911 ! implied link automatically realized ! endo-epithelium relationship: part_of UBERON:0002255 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002255 ! vomeronasal organ relationship: develops_from UBERON:0001997 {source="EHDAA2"} ! olfactory epithelium [Term] id: UBERON:0003368 name: epithelium of hard palate def: "An epithelium that is part of a hard palate [Obol]." [OBOL:automatic] synonym: "epithelial tissue of hard palate" EXACT [OBOL:automatic] synonym: "hard palate epithelial tissue" EXACT [OBOL:automatic] synonym: "hard palate epithelium" EXACT [OBOL:automatic] xref: EMAPA:18953 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0003235 ! implied link automatically realized ! epithelium of upper jaw is_a: UBERON:0003929 ! implied link automatically realized ! gut epithelium relationship: part_of UBERON:0003216 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0003216 ! hard palate [Term] id: UBERON:0003369 name: fossa ovalis of heart def: "Found in the right atrium of the heart, the fossa ovalis is an embryonic remnant of the foramen ovale, which normally closes shortly after birth. In a heart specimen of a neonate, the fossa ovalis is translucent, but later in life the membrane thickens." [Wikipedia:Fossa_ovalis_(heart)] synonym: "fossa ovalis" EXACT [FMA:9246] synonym: "oval fossa" EXACT [FMA:9246] xref: FMA:9246 xref: SCTID:277719009 is_a: UBERON:0006984 {source="FMA"} ! anatomical surface relationship: develops_from UBERON:0004754 {source="Wikipedia"} ! foramen ovale of heart relationship: part_of UBERON:0002078 ! right atrium [Term] id: UBERON:0003371 name: hindlimb bud ectoderm alt_id: UBERON:0005232 synonym: "hindlimb ectoderm" EXACT [OG:0001048] synonym: "leg ectoderm" RELATED [OBOL:automatic] synonym: "lower limb bud ectoderm" EXACT [EHDAA2:0001034] xref: EHDAA2:0001034 xref: EMAPA:17254 xref: OG:0001048 is_a: UBERON:0000924 ! implied link automatically realized ! ectoderm is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0005418 intersection_of: UBERON:0000924 ! ectoderm intersection_of: part_of UBERON:0005418 ! hindlimb bud [Term] id: UBERON:0003372 name: forelimb bud ectoderm alt_id: UBERON:0005231 alt_id: UBERON:0005663 synonym: "arm ectoderm" RELATED [OBOL:automatic] synonym: "forelimb ectoderm" EXACT [OG:0001047] synonym: "upper limb bud ectoderm" EXACT [EHDAA2:0002134] synonym: "wing ectoderm" NARROW SENSU [Geisha:syn] xref: EHDAA2:0002134 xref: EMAPA:17243 xref: OG:0001047 is_a: UBERON:0000924 ! implied link automatically realized ! ectoderm is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0005417 intersection_of: UBERON:0000924 ! ectoderm intersection_of: part_of UBERON:0005417 ! forelimb bud [Term] id: UBERON:0003373 name: ectoderm of footplate xref: EMAPA:17250 is_a: UBERON:0003371 ! implied link automatically realized ! hindlimb bud ectoderm relationship: part_of UBERON:0006871 intersection_of: UBERON:0000924 ! ectoderm intersection_of: part_of UBERON:0006871 ! footplate [Term] id: UBERON:0003374 name: chorionic ectoderm synonym: "chorion ectoderm" EXACT [OBOL:automatic] xref: EMAPA:16113 is_a: UBERON:0000478 ! implied link automatically realized ! extraembryonic structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: develops_from UBERON:0000924 relationship: part_of UBERON:0003124 intersection_of: UBERON:0000478 ! extraembryonic structure intersection_of: develops_from UBERON:0000924 ! ectoderm intersection_of: part_of UBERON:0003124 ! chorion relationship: develops_from UBERON:0000924 {source="ISBN10:0073040584"} ! ectoderm [Term] id: UBERON:0003378 name: cardiac muscle of auricular region synonym: "cardiac muscle tissue of auricle" EXACT [FMA:84279] xref: EMAPA:17318 xref: EMAPA:17324 xref: FMA:84279 is_a: UBERON:0004490 ! implied link automatically realized ! cardiac muscle tissue of atrium relationship: part_of UBERON:0006618 intersection_of: UBERON:0001133 ! cardiac muscle tissue intersection_of: part_of UBERON:0006618 ! atrium auricular region relationship: part_of UBERON:0001133 ! cardiac muscle tissue [Term] id: UBERON:0003379 name: cardiac muscle of right atrium def: "A portion of cardiac muscle tissue that is part of a right atrium [Obol]." [OBOL:automatic] synonym: "cardiac muscle muscle tissue of cardiac right atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle muscle tissue of heart right atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle muscle tissue of right atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle muscle tissue of right atrium of heart" EXACT [OBOL:automatic] synonym: "cardiac muscle muscle tissue of right cardiac atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle of cardiac right atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle of heart right atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle of right atrium of heart" EXACT [OBOL:automatic] synonym: "cardiac muscle of right cardiac atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle textus muscularis of cardiac right atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle textus muscularis of heart right atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle textus muscularis of right atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle textus muscularis of right atrium of heart" EXACT [OBOL:automatic] synonym: "cardiac muscle textus muscularis of right cardiac atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle tissue of cardiac right atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle tissue of heart right atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle tissue of right atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle tissue of right atrium of heart" EXACT [OBOL:automatic] synonym: "cardiac muscle tissue of right cardiac atrium" EXACT [OBOL:automatic] synonym: "cardiac right atrium cardiac muscle" EXACT [OBOL:automatic] synonym: "cardiac right atrium cardiac muscle muscle tissue" EXACT [OBOL:automatic] synonym: "cardiac right atrium cardiac muscle textus muscularis" EXACT [OBOL:automatic] synonym: "cardiac right atrium cardiac muscle tissue" EXACT [OBOL:automatic] synonym: "cardiac right atrium heart muscle muscle tissue" EXACT [OBOL:automatic] synonym: "cardiac right atrium heart muscle textus muscularis" EXACT [OBOL:automatic] synonym: "cardiac right atrium heart myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "cardiac right atrium heart myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "cardiac right atrium muscle of heart muscle tissue" EXACT [OBOL:automatic] synonym: "cardiac right atrium muscle of heart textus muscularis" EXACT [OBOL:automatic] synonym: "cardiac right atrium muscle tissue of cardiac muscle" EXACT [OBOL:automatic] synonym: "cardiac right atrium muscle tissue of heart muscle" EXACT [OBOL:automatic] synonym: "cardiac right atrium muscle tissue of heart myocardium" EXACT [OBOL:automatic] synonym: "cardiac right atrium muscle tissue of muscle of heart" EXACT [OBOL:automatic] synonym: "cardiac right atrium muscle tissue of myocardium" EXACT [OBOL:automatic] synonym: "cardiac right atrium myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "cardiac right atrium myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "cardiac right atrium textus muscularis of cardiac muscle" EXACT [OBOL:automatic] synonym: "cardiac right atrium textus muscularis of heart muscle" EXACT [OBOL:automatic] synonym: "cardiac right atrium textus muscularis of heart myocardium" EXACT [OBOL:automatic] synonym: "cardiac right atrium textus muscularis of muscle of heart" EXACT [OBOL:automatic] synonym: "cardiac right atrium textus muscularis of myocardium" EXACT [OBOL:automatic] synonym: "heart muscle muscle tissue of cardiac right atrium" EXACT [OBOL:automatic] synonym: "heart muscle muscle tissue of heart right atrium" EXACT [OBOL:automatic] synonym: "heart muscle muscle tissue of right atrium" EXACT [OBOL:automatic] synonym: "heart muscle muscle tissue of right atrium of heart" EXACT [OBOL:automatic] synonym: "heart muscle muscle tissue of right cardiac atrium" EXACT [OBOL:automatic] synonym: "heart muscle textus muscularis of cardiac right atrium" EXACT [OBOL:automatic] synonym: "heart muscle textus muscularis of heart right atrium" EXACT [OBOL:automatic] synonym: "heart muscle textus muscularis of right atrium" EXACT [OBOL:automatic] synonym: "heart muscle textus muscularis of right atrium of heart" EXACT [OBOL:automatic] synonym: "heart muscle textus muscularis of right cardiac atrium" EXACT [OBOL:automatic] synonym: "heart myocardium muscle tissue of cardiac right atrium" EXACT [OBOL:automatic] synonym: "heart myocardium muscle tissue of heart right atrium" EXACT [OBOL:automatic] synonym: "heart myocardium muscle tissue of right atrium" EXACT [OBOL:automatic] synonym: "heart myocardium muscle tissue of right atrium of heart" EXACT [OBOL:automatic] synonym: "heart myocardium muscle tissue of right cardiac atrium" EXACT [OBOL:automatic] synonym: "heart myocardium textus muscularis of cardiac right atrium" EXACT [OBOL:automatic] synonym: "heart myocardium textus muscularis of heart right atrium" EXACT [OBOL:automatic] synonym: "heart myocardium textus muscularis of right atrium" EXACT [OBOL:automatic] synonym: "heart myocardium textus muscularis of right atrium of heart" EXACT [OBOL:automatic] synonym: "heart myocardium textus muscularis of right cardiac atrium" EXACT [OBOL:automatic] synonym: "heart right atrium cardiac muscle" EXACT [OBOL:automatic] synonym: "heart right atrium cardiac muscle muscle tissue" EXACT [OBOL:automatic] synonym: "heart right atrium cardiac muscle textus muscularis" EXACT [OBOL:automatic] synonym: "heart right atrium cardiac muscle tissue" EXACT [OBOL:automatic] synonym: "heart right atrium heart muscle muscle tissue" EXACT [OBOL:automatic] synonym: "heart right atrium heart muscle textus muscularis" EXACT [OBOL:automatic] synonym: "heart right atrium heart myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "heart right atrium heart myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "heart right atrium muscle of heart muscle tissue" EXACT [OBOL:automatic] synonym: "heart right atrium muscle of heart textus muscularis" EXACT [OBOL:automatic] synonym: "heart right atrium muscle tissue of cardiac muscle" EXACT [OBOL:automatic] synonym: "heart right atrium muscle tissue of heart muscle" EXACT [OBOL:automatic] synonym: "heart right atrium muscle tissue of heart myocardium" EXACT [OBOL:automatic] synonym: "heart right atrium muscle tissue of muscle of heart" EXACT [OBOL:automatic] synonym: "heart right atrium muscle tissue of myocardium" EXACT [OBOL:automatic] synonym: "heart right atrium myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "heart right atrium myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "heart right atrium textus muscularis of cardiac muscle" EXACT [OBOL:automatic] synonym: "heart right atrium textus muscularis of heart muscle" EXACT [OBOL:automatic] synonym: "heart right atrium textus muscularis of heart myocardium" EXACT [OBOL:automatic] synonym: "heart right atrium textus muscularis of muscle of heart" EXACT [OBOL:automatic] synonym: "heart right atrium textus muscularis of myocardium" EXACT [OBOL:automatic] synonym: "muscle of heart muscle tissue of cardiac right atrium" EXACT [OBOL:automatic] synonym: "muscle of heart muscle tissue of heart right atrium" EXACT [OBOL:automatic] synonym: "muscle of heart muscle tissue of right atrium" EXACT [OBOL:automatic] synonym: "muscle of heart muscle tissue of right atrium of heart" EXACT [OBOL:automatic] synonym: "muscle of heart muscle tissue of right cardiac atrium" EXACT [OBOL:automatic] synonym: "muscle of heart textus muscularis of cardiac right atrium" EXACT [OBOL:automatic] synonym: "muscle of heart textus muscularis of heart right atrium" EXACT [OBOL:automatic] synonym: "muscle of heart textus muscularis of right atrium" EXACT [OBOL:automatic] synonym: "muscle of heart textus muscularis of right atrium of heart" EXACT [OBOL:automatic] synonym: "muscle of heart textus muscularis of right cardiac atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of cardiac muscle of cardiac right atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of cardiac muscle of heart right atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of cardiac muscle of right atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of cardiac muscle of right atrium of heart" EXACT [OBOL:automatic] synonym: "muscle tissue of cardiac muscle of right cardiac atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of heart muscle of cardiac right atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of heart muscle of heart right atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of heart muscle of right atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of heart muscle of right atrium of heart" EXACT [OBOL:automatic] synonym: "muscle tissue of heart muscle of right cardiac atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of heart myocardium of cardiac right atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of heart myocardium of heart right atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of heart myocardium of right atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of heart myocardium of right atrium of heart" EXACT [OBOL:automatic] synonym: "muscle tissue of heart myocardium of right cardiac atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of muscle of heart of cardiac right atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of muscle of heart of heart right atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of muscle of heart of right atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of muscle of heart of right atrium of heart" EXACT [OBOL:automatic] synonym: "muscle tissue of muscle of heart of right cardiac atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of myocardium of cardiac right atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of myocardium of heart right atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of myocardium of right atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of myocardium of right atrium of heart" EXACT [OBOL:automatic] synonym: "muscle tissue of myocardium of right cardiac atrium" EXACT [OBOL:automatic] synonym: "myocardium muscle tissue of cardiac right atrium" EXACT [OBOL:automatic] synonym: "myocardium muscle tissue of heart right atrium" EXACT [OBOL:automatic] synonym: "myocardium muscle tissue of right atrium" EXACT [OBOL:automatic] synonym: "myocardium muscle tissue of right atrium of heart" EXACT [OBOL:automatic] synonym: "myocardium muscle tissue of right cardiac atrium" EXACT [OBOL:automatic] synonym: "myocardium textus muscularis of cardiac right atrium" EXACT [OBOL:automatic] synonym: "myocardium textus muscularis of heart right atrium" EXACT [OBOL:automatic] synonym: "myocardium textus muscularis of right atrium" EXACT [OBOL:automatic] synonym: "myocardium textus muscularis of right atrium of heart" EXACT [OBOL:automatic] synonym: "myocardium textus muscularis of right cardiac atrium" EXACT [OBOL:automatic] synonym: "right atrium cardiac muscle" EXACT [OBOL:automatic] synonym: "right atrium cardiac muscle muscle tissue" EXACT [OBOL:automatic] synonym: "right atrium cardiac muscle textus muscularis" EXACT [OBOL:automatic] synonym: "right atrium cardiac muscle tissue" EXACT [OBOL:automatic] synonym: "right atrium heart muscle muscle tissue" EXACT [OBOL:automatic] synonym: "right atrium heart muscle textus muscularis" EXACT [OBOL:automatic] synonym: "right atrium heart myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "right atrium heart myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "right atrium muscle of heart muscle tissue" EXACT [OBOL:automatic] synonym: "right atrium muscle of heart textus muscularis" EXACT [OBOL:automatic] synonym: "right atrium muscle tissue of cardiac muscle" EXACT [OBOL:automatic] synonym: "right atrium muscle tissue of heart muscle" EXACT [OBOL:automatic] synonym: "right atrium muscle tissue of heart myocardium" EXACT [OBOL:automatic] synonym: "right atrium muscle tissue of muscle of heart" EXACT [OBOL:automatic] synonym: "right atrium muscle tissue of myocardium" EXACT [OBOL:automatic] synonym: "right atrium myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "right atrium myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "right atrium of heart cardiac muscle" EXACT [OBOL:automatic] synonym: "right atrium of heart cardiac muscle muscle tissue" EXACT [OBOL:automatic] synonym: "right atrium of heart cardiac muscle textus muscularis" EXACT [OBOL:automatic] synonym: "right atrium of heart cardiac muscle tissue" EXACT [OBOL:automatic] synonym: "right atrium of heart heart muscle muscle tissue" EXACT [OBOL:automatic] synonym: "right atrium of heart heart muscle textus muscularis" EXACT [OBOL:automatic] synonym: "right atrium of heart heart myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "right atrium of heart heart myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "right atrium of heart muscle of heart muscle tissue" EXACT [OBOL:automatic] synonym: "right atrium of heart muscle of heart textus muscularis" EXACT [OBOL:automatic] synonym: "right atrium of heart muscle tissue of cardiac muscle" EXACT [OBOL:automatic] synonym: "right atrium of heart muscle tissue of heart muscle" EXACT [OBOL:automatic] synonym: "right atrium of heart muscle tissue of heart myocardium" EXACT [OBOL:automatic] synonym: "right atrium of heart muscle tissue of muscle of heart" EXACT [OBOL:automatic] synonym: "right atrium of heart muscle tissue of myocardium" EXACT [OBOL:automatic] synonym: "right atrium of heart myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "right atrium of heart myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "right atrium of heart textus muscularis of cardiac muscle" EXACT [OBOL:automatic] synonym: "right atrium of heart textus muscularis of heart muscle" EXACT [OBOL:automatic] synonym: "right atrium of heart textus muscularis of heart myocardium" EXACT [OBOL:automatic] synonym: "right atrium of heart textus muscularis of muscle of heart" EXACT [OBOL:automatic] synonym: "right atrium of heart textus muscularis of myocardium" EXACT [OBOL:automatic] synonym: "right atrium textus muscularis of cardiac muscle" EXACT [OBOL:automatic] synonym: "right atrium textus muscularis of heart muscle" EXACT [OBOL:automatic] synonym: "right atrium textus muscularis of heart myocardium" EXACT [OBOL:automatic] synonym: "right atrium textus muscularis of muscle of heart" EXACT [OBOL:automatic] synonym: "right atrium textus muscularis of myocardium" EXACT [OBOL:automatic] synonym: "right cardiac atrium cardiac muscle" EXACT [OBOL:automatic] synonym: "right cardiac atrium cardiac muscle muscle tissue" EXACT [OBOL:automatic] synonym: "right cardiac atrium cardiac muscle textus muscularis" EXACT [OBOL:automatic] synonym: "right cardiac atrium cardiac muscle tissue" EXACT [OBOL:automatic] synonym: "right cardiac atrium heart muscle muscle tissue" EXACT [OBOL:automatic] synonym: "right cardiac atrium heart muscle textus muscularis" EXACT [OBOL:automatic] synonym: "right cardiac atrium heart myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "right cardiac atrium heart myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "right cardiac atrium muscle of heart muscle tissue" EXACT [OBOL:automatic] synonym: "right cardiac atrium muscle of heart textus muscularis" EXACT [OBOL:automatic] synonym: "right cardiac atrium muscle tissue of cardiac muscle" EXACT [OBOL:automatic] synonym: "right cardiac atrium muscle tissue of heart muscle" EXACT [OBOL:automatic] synonym: "right cardiac atrium muscle tissue of heart myocardium" EXACT [OBOL:automatic] synonym: "right cardiac atrium muscle tissue of muscle of heart" EXACT [OBOL:automatic] synonym: "right cardiac atrium muscle tissue of myocardium" EXACT [OBOL:automatic] synonym: "right cardiac atrium myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "right cardiac atrium myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "right cardiac atrium textus muscularis of cardiac muscle" EXACT [OBOL:automatic] synonym: "right cardiac atrium textus muscularis of heart muscle" EXACT [OBOL:automatic] synonym: "right cardiac atrium textus muscularis of heart myocardium" EXACT [OBOL:automatic] synonym: "right cardiac atrium textus muscularis of muscle of heart" EXACT [OBOL:automatic] synonym: "right cardiac atrium textus muscularis of myocardium" EXACT [OBOL:automatic] synonym: "textus muscularis of cardiac muscle of cardiac right atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of cardiac muscle of heart right atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of cardiac muscle of right atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of cardiac muscle of right atrium of heart" EXACT [OBOL:automatic] synonym: "textus muscularis of cardiac muscle of right cardiac atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of heart muscle of cardiac right atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of heart muscle of heart right atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of heart muscle of right atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of heart muscle of right atrium of heart" EXACT [OBOL:automatic] synonym: "textus muscularis of heart muscle of right cardiac atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of heart myocardium of cardiac right atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of heart myocardium of heart right atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of heart myocardium of right atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of heart myocardium of right atrium of heart" EXACT [OBOL:automatic] synonym: "textus muscularis of heart myocardium of right cardiac atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of muscle of heart of cardiac right atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of muscle of heart of heart right atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of muscle of heart of right atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of muscle of heart of right atrium of heart" EXACT [OBOL:automatic] synonym: "textus muscularis of muscle of heart of right cardiac atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of myocardium of cardiac right atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of myocardium of heart right atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of myocardium of right atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of myocardium of right atrium of heart" EXACT [OBOL:automatic] synonym: "textus muscularis of myocardium of right cardiac atrium" EXACT [OBOL:automatic] xref: EHDAA2:0004155 xref: EMAPA:17326 xref: FMA:7282 xref: OG:0001227 is_a: UBERON:0004490 ! implied link automatically realized ! cardiac muscle tissue of atrium relationship: part_of UBERON:0002078 intersection_of: UBERON:0001133 ! cardiac muscle tissue intersection_of: part_of UBERON:0002078 ! right atrium [Term] id: UBERON:0003380 name: cardiac muscle of left atrium def: "A portion of cardiac muscle tissue that is part of a left atrium [Obol]." [OBOL:automatic] synonym: "cardiac left atrium cardiac muscle" EXACT [OBOL:automatic] synonym: "cardiac left atrium cardiac muscle muscle tissue" EXACT [OBOL:automatic] synonym: "cardiac left atrium cardiac muscle textus muscularis" EXACT [OBOL:automatic] synonym: "cardiac left atrium cardiac muscle tissue" EXACT [OBOL:automatic] synonym: "cardiac left atrium heart muscle muscle tissue" EXACT [OBOL:automatic] synonym: "cardiac left atrium heart muscle textus muscularis" EXACT [OBOL:automatic] synonym: "cardiac left atrium heart myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "cardiac left atrium heart myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "cardiac left atrium muscle of heart muscle tissue" EXACT [OBOL:automatic] synonym: "cardiac left atrium muscle of heart textus muscularis" EXACT [OBOL:automatic] synonym: "cardiac left atrium muscle tissue of cardiac muscle" EXACT [OBOL:automatic] synonym: "cardiac left atrium muscle tissue of heart muscle" EXACT [OBOL:automatic] synonym: "cardiac left atrium muscle tissue of heart myocardium" EXACT [OBOL:automatic] synonym: "cardiac left atrium muscle tissue of muscle of heart" EXACT [OBOL:automatic] synonym: "cardiac left atrium muscle tissue of myocardium" EXACT [OBOL:automatic] synonym: "cardiac left atrium myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "cardiac left atrium myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "cardiac left atrium textus muscularis of cardiac muscle" EXACT [OBOL:automatic] synonym: "cardiac left atrium textus muscularis of heart muscle" EXACT [OBOL:automatic] synonym: "cardiac left atrium textus muscularis of heart myocardium" EXACT [OBOL:automatic] synonym: "cardiac left atrium textus muscularis of muscle of heart" EXACT [OBOL:automatic] synonym: "cardiac left atrium textus muscularis of myocardium" EXACT [OBOL:automatic] synonym: "cardiac muscle muscle tissue of cardiac left atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle muscle tissue of heart left atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle muscle tissue of left atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle muscle tissue of left atrium of heart" EXACT [OBOL:automatic] synonym: "cardiac muscle muscle tissue of left cardiac atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle of cardiac left atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle of heart left atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle of left atrium of heart" EXACT [OBOL:automatic] synonym: "cardiac muscle of left cardiac atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle textus muscularis of cardiac left atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle textus muscularis of heart left atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle textus muscularis of left atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle textus muscularis of left atrium of heart" EXACT [OBOL:automatic] synonym: "cardiac muscle textus muscularis of left cardiac atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle tissue of cardiac left atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle tissue of heart left atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle tissue of left atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle tissue of left atrium of heart" EXACT [OBOL:automatic] synonym: "cardiac muscle tissue of left cardiac atrium" EXACT [OBOL:automatic] synonym: "heart left atrium cardiac muscle" EXACT [OBOL:automatic] synonym: "heart left atrium cardiac muscle muscle tissue" EXACT [OBOL:automatic] synonym: "heart left atrium cardiac muscle textus muscularis" EXACT [OBOL:automatic] synonym: "heart left atrium cardiac muscle tissue" EXACT [OBOL:automatic] synonym: "heart left atrium heart muscle muscle tissue" EXACT [OBOL:automatic] synonym: "heart left atrium heart muscle textus muscularis" EXACT [OBOL:automatic] synonym: "heart left atrium heart myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "heart left atrium heart myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "heart left atrium muscle of heart muscle tissue" EXACT [OBOL:automatic] synonym: "heart left atrium muscle of heart textus muscularis" EXACT [OBOL:automatic] synonym: "heart left atrium muscle tissue of cardiac muscle" EXACT [OBOL:automatic] synonym: "heart left atrium muscle tissue of heart muscle" EXACT [OBOL:automatic] synonym: "heart left atrium muscle tissue of heart myocardium" EXACT [OBOL:automatic] synonym: "heart left atrium muscle tissue of muscle of heart" EXACT [OBOL:automatic] synonym: "heart left atrium muscle tissue of myocardium" EXACT [OBOL:automatic] synonym: "heart left atrium myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "heart left atrium myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "heart left atrium textus muscularis of cardiac muscle" EXACT [OBOL:automatic] synonym: "heart left atrium textus muscularis of heart muscle" EXACT [OBOL:automatic] synonym: "heart left atrium textus muscularis of heart myocardium" EXACT [OBOL:automatic] synonym: "heart left atrium textus muscularis of muscle of heart" EXACT [OBOL:automatic] synonym: "heart left atrium textus muscularis of myocardium" EXACT [OBOL:automatic] synonym: "heart muscle muscle tissue of cardiac left atrium" EXACT [OBOL:automatic] synonym: "heart muscle muscle tissue of heart left atrium" EXACT [OBOL:automatic] synonym: "heart muscle muscle tissue of left atrium" EXACT [OBOL:automatic] synonym: "heart muscle muscle tissue of left atrium of heart" EXACT [OBOL:automatic] synonym: "heart muscle muscle tissue of left cardiac atrium" EXACT [OBOL:automatic] synonym: "heart muscle textus muscularis of cardiac left atrium" EXACT [OBOL:automatic] synonym: "heart muscle textus muscularis of heart left atrium" EXACT [OBOL:automatic] synonym: "heart muscle textus muscularis of left atrium" EXACT [OBOL:automatic] synonym: "heart muscle textus muscularis of left atrium of heart" EXACT [OBOL:automatic] synonym: "heart muscle textus muscularis of left cardiac atrium" EXACT [OBOL:automatic] synonym: "heart myocardium muscle tissue of cardiac left atrium" EXACT [OBOL:automatic] synonym: "heart myocardium muscle tissue of heart left atrium" EXACT [OBOL:automatic] synonym: "heart myocardium muscle tissue of left atrium" EXACT [OBOL:automatic] synonym: "heart myocardium muscle tissue of left atrium of heart" EXACT [OBOL:automatic] synonym: "heart myocardium muscle tissue of left cardiac atrium" EXACT [OBOL:automatic] synonym: "heart myocardium textus muscularis of cardiac left atrium" EXACT [OBOL:automatic] synonym: "heart myocardium textus muscularis of heart left atrium" EXACT [OBOL:automatic] synonym: "heart myocardium textus muscularis of left atrium" EXACT [OBOL:automatic] synonym: "heart myocardium textus muscularis of left atrium of heart" EXACT [OBOL:automatic] synonym: "heart myocardium textus muscularis of left cardiac atrium" EXACT [OBOL:automatic] synonym: "left atrium cardiac muscle" EXACT [OBOL:automatic] synonym: "left atrium cardiac muscle muscle tissue" EXACT [OBOL:automatic] synonym: "left atrium cardiac muscle textus muscularis" EXACT [OBOL:automatic] synonym: "left atrium cardiac muscle tissue" EXACT [OBOL:automatic] synonym: "left atrium heart muscle muscle tissue" EXACT [OBOL:automatic] synonym: "left atrium heart muscle textus muscularis" EXACT [OBOL:automatic] synonym: "left atrium heart myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "left atrium heart myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "left atrium muscle of heart muscle tissue" EXACT [OBOL:automatic] synonym: "left atrium muscle of heart textus muscularis" EXACT [OBOL:automatic] synonym: "left atrium muscle tissue of cardiac muscle" EXACT [OBOL:automatic] synonym: "left atrium muscle tissue of heart muscle" EXACT [OBOL:automatic] synonym: "left atrium muscle tissue of heart myocardium" EXACT [OBOL:automatic] synonym: "left atrium muscle tissue of muscle of heart" EXACT [OBOL:automatic] synonym: "left atrium muscle tissue of myocardium" EXACT [OBOL:automatic] synonym: "left atrium myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "left atrium myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "left atrium of heart cardiac muscle" EXACT [OBOL:automatic] synonym: "left atrium of heart cardiac muscle muscle tissue" EXACT [OBOL:automatic] synonym: "left atrium of heart cardiac muscle textus muscularis" EXACT [OBOL:automatic] synonym: "left atrium of heart cardiac muscle tissue" EXACT [OBOL:automatic] synonym: "left atrium of heart heart muscle muscle tissue" EXACT [OBOL:automatic] synonym: "left atrium of heart heart muscle textus muscularis" EXACT [OBOL:automatic] synonym: "left atrium of heart heart myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "left atrium of heart heart myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "left atrium of heart muscle of heart muscle tissue" EXACT [OBOL:automatic] synonym: "left atrium of heart muscle of heart textus muscularis" EXACT [OBOL:automatic] synonym: "left atrium of heart muscle tissue of cardiac muscle" EXACT [OBOL:automatic] synonym: "left atrium of heart muscle tissue of heart muscle" EXACT [OBOL:automatic] synonym: "left atrium of heart muscle tissue of heart myocardium" EXACT [OBOL:automatic] synonym: "left atrium of heart muscle tissue of muscle of heart" EXACT [OBOL:automatic] synonym: "left atrium of heart muscle tissue of myocardium" EXACT [OBOL:automatic] synonym: "left atrium of heart myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "left atrium of heart myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "left atrium of heart textus muscularis of cardiac muscle" EXACT [OBOL:automatic] synonym: "left atrium of heart textus muscularis of heart muscle" EXACT [OBOL:automatic] synonym: "left atrium of heart textus muscularis of heart myocardium" EXACT [OBOL:automatic] synonym: "left atrium of heart textus muscularis of muscle of heart" EXACT [OBOL:automatic] synonym: "left atrium of heart textus muscularis of myocardium" EXACT [OBOL:automatic] synonym: "left atrium textus muscularis of cardiac muscle" EXACT [OBOL:automatic] synonym: "left atrium textus muscularis of heart muscle" EXACT [OBOL:automatic] synonym: "left atrium textus muscularis of heart myocardium" EXACT [OBOL:automatic] synonym: "left atrium textus muscularis of muscle of heart" EXACT [OBOL:automatic] synonym: "left atrium textus muscularis of myocardium" EXACT [OBOL:automatic] synonym: "left cardiac atrium cardiac muscle" EXACT [OBOL:automatic] synonym: "left cardiac atrium cardiac muscle muscle tissue" EXACT [OBOL:automatic] synonym: "left cardiac atrium cardiac muscle textus muscularis" EXACT [OBOL:automatic] synonym: "left cardiac atrium cardiac muscle tissue" EXACT [OBOL:automatic] synonym: "left cardiac atrium heart muscle muscle tissue" EXACT [OBOL:automatic] synonym: "left cardiac atrium heart muscle textus muscularis" EXACT [OBOL:automatic] synonym: "left cardiac atrium heart myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "left cardiac atrium heart myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "left cardiac atrium muscle of heart muscle tissue" EXACT [OBOL:automatic] synonym: "left cardiac atrium muscle of heart textus muscularis" EXACT [OBOL:automatic] synonym: "left cardiac atrium muscle tissue of cardiac muscle" EXACT [OBOL:automatic] synonym: "left cardiac atrium muscle tissue of heart muscle" EXACT [OBOL:automatic] synonym: "left cardiac atrium muscle tissue of heart myocardium" EXACT [OBOL:automatic] synonym: "left cardiac atrium muscle tissue of muscle of heart" EXACT [OBOL:automatic] synonym: "left cardiac atrium muscle tissue of myocardium" EXACT [OBOL:automatic] synonym: "left cardiac atrium myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "left cardiac atrium myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "left cardiac atrium textus muscularis of cardiac muscle" EXACT [OBOL:automatic] synonym: "left cardiac atrium textus muscularis of heart muscle" EXACT [OBOL:automatic] synonym: "left cardiac atrium textus muscularis of heart myocardium" EXACT [OBOL:automatic] synonym: "left cardiac atrium textus muscularis of muscle of heart" EXACT [OBOL:automatic] synonym: "left cardiac atrium textus muscularis of myocardium" EXACT [OBOL:automatic] synonym: "muscle of heart muscle tissue of cardiac left atrium" EXACT [OBOL:automatic] synonym: "muscle of heart muscle tissue of heart left atrium" EXACT [OBOL:automatic] synonym: "muscle of heart muscle tissue of left atrium" EXACT [OBOL:automatic] synonym: "muscle of heart muscle tissue of left atrium of heart" EXACT [OBOL:automatic] synonym: "muscle of heart muscle tissue of left cardiac atrium" EXACT [OBOL:automatic] synonym: "muscle of heart textus muscularis of cardiac left atrium" EXACT [OBOL:automatic] synonym: "muscle of heart textus muscularis of heart left atrium" EXACT [OBOL:automatic] synonym: "muscle of heart textus muscularis of left atrium" EXACT [OBOL:automatic] synonym: "muscle of heart textus muscularis of left atrium of heart" EXACT [OBOL:automatic] synonym: "muscle of heart textus muscularis of left cardiac atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of cardiac muscle of cardiac left atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of cardiac muscle of heart left atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of cardiac muscle of left atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of cardiac muscle of left atrium of heart" EXACT [OBOL:automatic] synonym: "muscle tissue of cardiac muscle of left cardiac atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of heart muscle of cardiac left atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of heart muscle of heart left atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of heart muscle of left atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of heart muscle of left atrium of heart" EXACT [OBOL:automatic] synonym: "muscle tissue of heart muscle of left cardiac atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of heart myocardium of cardiac left atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of heart myocardium of heart left atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of heart myocardium of left atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of heart myocardium of left atrium of heart" EXACT [OBOL:automatic] synonym: "muscle tissue of heart myocardium of left cardiac atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of muscle of heart of cardiac left atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of muscle of heart of heart left atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of muscle of heart of left atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of muscle of heart of left atrium of heart" EXACT [OBOL:automatic] synonym: "muscle tissue of muscle of heart of left cardiac atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of myocardium of cardiac left atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of myocardium of heart left atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of myocardium of left atrium" EXACT [OBOL:automatic] synonym: "muscle tissue of myocardium of left atrium of heart" EXACT [OBOL:automatic] synonym: "muscle tissue of myocardium of left cardiac atrium" EXACT [OBOL:automatic] synonym: "myocardium muscle tissue of cardiac left atrium" EXACT [OBOL:automatic] synonym: "myocardium muscle tissue of heart left atrium" EXACT [OBOL:automatic] synonym: "myocardium muscle tissue of left atrium" EXACT [OBOL:automatic] synonym: "myocardium muscle tissue of left atrium of heart" EXACT [OBOL:automatic] synonym: "myocardium muscle tissue of left cardiac atrium" EXACT [OBOL:automatic] synonym: "myocardium textus muscularis of cardiac left atrium" EXACT [OBOL:automatic] synonym: "myocardium textus muscularis of heart left atrium" EXACT [OBOL:automatic] synonym: "myocardium textus muscularis of left atrium" EXACT [OBOL:automatic] synonym: "myocardium textus muscularis of left atrium of heart" EXACT [OBOL:automatic] synonym: "myocardium textus muscularis of left cardiac atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of cardiac muscle of cardiac left atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of cardiac muscle of heart left atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of cardiac muscle of left atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of cardiac muscle of left atrium of heart" EXACT [OBOL:automatic] synonym: "textus muscularis of cardiac muscle of left cardiac atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of heart muscle of cardiac left atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of heart muscle of heart left atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of heart muscle of left atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of heart muscle of left atrium of heart" EXACT [OBOL:automatic] synonym: "textus muscularis of heart muscle of left cardiac atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of heart myocardium of cardiac left atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of heart myocardium of heart left atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of heart myocardium of left atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of heart myocardium of left atrium of heart" EXACT [OBOL:automatic] synonym: "textus muscularis of heart myocardium of left cardiac atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of muscle of heart of cardiac left atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of muscle of heart of heart left atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of muscle of heart of left atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of muscle of heart of left atrium of heart" EXACT [OBOL:automatic] synonym: "textus muscularis of muscle of heart of left cardiac atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of myocardium of cardiac left atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of myocardium of heart left atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of myocardium of left atrium" EXACT [OBOL:automatic] synonym: "textus muscularis of myocardium of left atrium of heart" EXACT [OBOL:automatic] synonym: "textus muscularis of myocardium of left cardiac atrium" EXACT [OBOL:automatic] xref: EHDAA2:0004154 xref: EMAPA:17320 xref: FMA:7285 xref: OG:0001225 is_a: UBERON:0004490 ! implied link automatically realized ! cardiac muscle tissue of atrium relationship: part_of UBERON:0002079 intersection_of: UBERON:0001133 ! cardiac muscle tissue intersection_of: part_of UBERON:0002079 ! left atrium [Term] id: UBERON:0003381 name: cardiac muscle of right ventricle def: "A portion of cardiac muscle tissue that is part of a right ventricle [Obol]." [OBOL:automatic] synonym: "right ventricular cardiac muscle tissue" EXACT [GO:0003221] xref: EMAPA:17342 xref: FMA:83452 xref: OG:0001236 is_a: UBERON:0001133 ! implied link automatically realized ! cardiac muscle tissue relationship: part_of UBERON:0002080 intersection_of: UBERON:0001133 ! cardiac muscle tissue intersection_of: part_of UBERON:0002080 ! heart right ventricle [Term] id: UBERON:0003382 name: cardiac muscle of left ventricle def: "A portion of cardiac muscle tissue that is part of a left ventricle [Obol]." [OBOL:automatic] synonym: "left ventricular cardiac muscle tissue" EXACT [GO:0003220] xref: EMAPA:17339 xref: FMA:83453 xref: OG:0001234 is_a: UBERON:0001133 ! implied link automatically realized ! cardiac muscle tissue relationship: part_of UBERON:0002084 intersection_of: UBERON:0001133 ! cardiac muscle tissue intersection_of: part_of UBERON:0002084 ! heart left ventricle [Term] id: UBERON:0003383 name: cardiac muscle of interventricular septum def: "A portion of cardiac muscle tissue that is part of a interventricular septum [Obol]." [OBOL:automatic] synonym: "cardiac muscle muscle tissue of interventricular septum" EXACT [OBOL:automatic] synonym: "cardiac muscle muscle tissue of ventricular septum" EXACT [OBOL:automatic] synonym: "cardiac muscle of ventricular septum" EXACT [OBOL:automatic] synonym: "cardiac muscle textus muscularis of interventricular septum" EXACT [OBOL:automatic] synonym: "cardiac muscle textus muscularis of ventricular septum" EXACT [OBOL:automatic] synonym: "cardiac muscle tissue of interventricular septum" EXACT [OBOL:automatic] synonym: "cardiac muscle tissue of ventricular septum" EXACT [OBOL:automatic] synonym: "heart muscle muscle tissue of interventricular septum" EXACT [OBOL:automatic] synonym: "heart muscle muscle tissue of ventricular septum" EXACT [OBOL:automatic] synonym: "heart muscle textus muscularis of interventricular septum" EXACT [OBOL:automatic] synonym: "heart muscle textus muscularis of ventricular septum" EXACT [OBOL:automatic] synonym: "heart myocardium muscle tissue of interventricular septum" EXACT [OBOL:automatic] synonym: "heart myocardium muscle tissue of ventricular septum" EXACT [OBOL:automatic] synonym: "heart myocardium textus muscularis of interventricular septum" EXACT [OBOL:automatic] synonym: "heart myocardium textus muscularis of ventricular septum" EXACT [OBOL:automatic] synonym: "interventricular septum cardiac muscle" EXACT [OBOL:automatic] synonym: "interventricular septum cardiac muscle muscle tissue" EXACT [OBOL:automatic] synonym: "interventricular septum cardiac muscle textus muscularis" EXACT [OBOL:automatic] synonym: "interventricular septum cardiac muscle tissue" EXACT [OBOL:automatic] synonym: "interventricular septum heart muscle muscle tissue" EXACT [OBOL:automatic] synonym: "interventricular septum heart muscle textus muscularis" EXACT [OBOL:automatic] synonym: "interventricular septum heart myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "interventricular septum heart myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "interventricular septum muscle of heart muscle tissue" EXACT [OBOL:automatic] synonym: "interventricular septum muscle of heart textus muscularis" EXACT [OBOL:automatic] synonym: "interventricular septum muscle tissue of cardiac muscle" EXACT [OBOL:automatic] synonym: "interventricular septum muscle tissue of heart muscle" EXACT [OBOL:automatic] synonym: "interventricular septum muscle tissue of heart myocardium" EXACT [OBOL:automatic] synonym: "interventricular septum muscle tissue of muscle of heart" EXACT [OBOL:automatic] synonym: "interventricular septum muscle tissue of myocardium" EXACT [OBOL:automatic] synonym: "interventricular septum myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "interventricular septum myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "interventricular septum textus muscularis of cardiac muscle" EXACT [OBOL:automatic] synonym: "interventricular septum textus muscularis of heart muscle" EXACT [OBOL:automatic] synonym: "interventricular septum textus muscularis of heart myocardium" EXACT [OBOL:automatic] synonym: "interventricular septum textus muscularis of muscle of heart" EXACT [OBOL:automatic] synonym: "interventricular septum textus muscularis of myocardium" EXACT [OBOL:automatic] synonym: "muscle of heart muscle tissue of interventricular septum" EXACT [OBOL:automatic] synonym: "muscle of heart muscle tissue of ventricular septum" EXACT [OBOL:automatic] synonym: "muscle of heart textus muscularis of interventricular septum" EXACT [OBOL:automatic] synonym: "muscle of heart textus muscularis of ventricular septum" EXACT [OBOL:automatic] synonym: "muscle tissue of cardiac muscle of interventricular septum" EXACT [OBOL:automatic] synonym: "muscle tissue of cardiac muscle of ventricular septum" EXACT [OBOL:automatic] synonym: "muscle tissue of heart muscle of interventricular septum" EXACT [OBOL:automatic] synonym: "muscle tissue of heart muscle of ventricular septum" EXACT [OBOL:automatic] synonym: "muscle tissue of heart myocardium of interventricular septum" EXACT [OBOL:automatic] synonym: "muscle tissue of heart myocardium of ventricular septum" EXACT [OBOL:automatic] synonym: "muscle tissue of muscle of heart of interventricular septum" EXACT [OBOL:automatic] synonym: "muscle tissue of muscle of heart of ventricular septum" EXACT [OBOL:automatic] synonym: "muscle tissue of myocardium of interventricular septum" EXACT [OBOL:automatic] synonym: "muscle tissue of myocardium of ventricular septum" EXACT [OBOL:automatic] synonym: "myocardium muscle tissue of interventricular septum" EXACT [OBOL:automatic] synonym: "myocardium muscle tissue of ventricular septum" EXACT [OBOL:automatic] synonym: "myocardium textus muscularis of interventricular septum" EXACT [OBOL:automatic] synonym: "myocardium textus muscularis of ventricular septum" EXACT [OBOL:automatic] synonym: "textus muscularis of cardiac muscle of interventricular septum" EXACT [OBOL:automatic] synonym: "textus muscularis of cardiac muscle of ventricular septum" EXACT [OBOL:automatic] synonym: "textus muscularis of heart muscle of interventricular septum" EXACT [OBOL:automatic] synonym: "textus muscularis of heart muscle of ventricular septum" EXACT [OBOL:automatic] synonym: "textus muscularis of heart myocardium of interventricular septum" EXACT [OBOL:automatic] synonym: "textus muscularis of heart myocardium of ventricular septum" EXACT [OBOL:automatic] synonym: "textus muscularis of muscle of heart of interventricular septum" EXACT [OBOL:automatic] synonym: "textus muscularis of muscle of heart of ventricular septum" EXACT [OBOL:automatic] synonym: "textus muscularis of myocardium of interventricular septum" EXACT [OBOL:automatic] synonym: "textus muscularis of myocardium of ventricular septum" EXACT [OBOL:automatic] synonym: "ventricular septum cardiac muscle" EXACT [OBOL:automatic] synonym: "ventricular septum cardiac muscle muscle tissue" EXACT [OBOL:automatic] synonym: "ventricular septum cardiac muscle textus muscularis" EXACT [OBOL:automatic] synonym: "ventricular septum cardiac muscle tissue" EXACT [OBOL:automatic] synonym: "ventricular septum heart muscle muscle tissue" EXACT [OBOL:automatic] synonym: "ventricular septum heart muscle textus muscularis" EXACT [OBOL:automatic] synonym: "ventricular septum heart myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "ventricular septum heart myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "ventricular septum muscle of heart muscle tissue" EXACT [OBOL:automatic] synonym: "ventricular septum muscle of heart textus muscularis" EXACT [OBOL:automatic] synonym: "ventricular septum muscle tissue of cardiac muscle" EXACT [OBOL:automatic] synonym: "ventricular septum muscle tissue of heart muscle" EXACT [OBOL:automatic] synonym: "ventricular septum muscle tissue of heart myocardium" EXACT [OBOL:automatic] synonym: "ventricular septum muscle tissue of muscle of heart" EXACT [OBOL:automatic] synonym: "ventricular septum muscle tissue of myocardium" EXACT [OBOL:automatic] synonym: "ventricular septum myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "ventricular septum myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "ventricular septum textus muscularis of cardiac muscle" EXACT [OBOL:automatic] synonym: "ventricular septum textus muscularis of heart muscle" EXACT [OBOL:automatic] synonym: "ventricular septum textus muscularis of heart myocardium" EXACT [OBOL:automatic] synonym: "ventricular septum textus muscularis of muscle of heart" EXACT [OBOL:automatic] synonym: "ventricular septum textus muscularis of myocardium" EXACT [OBOL:automatic] xref: EHDAA2:0004158 xref: EMAPA:17335 xref: FMA:84084 xref: OG:0000999 is_a: UBERON:0004492 ! implied link automatically realized ! cardiac muscle tissue of cardiac septum is_a: UBERON:0004667 ! implied link automatically realized ! interventricular septum muscular part relationship: part_of UBERON:0002094 intersection_of: UBERON:0001133 ! cardiac muscle tissue intersection_of: part_of UBERON:0002094 ! interventricular septum [Term] id: UBERON:0003384 name: skeletal muscle of pharynx def: "A portion of skeletal muscle tissue that is part of a pharynx [Obol]." [OBOL:automatic] synonym: "pharynx skeletal muscle" EXACT [OBOL:automatic] synonym: "pharynx skeletal muscle tissue" EXACT [OBOL:automatic] synonym: "skeletal muscle tissue of pharynx" EXACT [OBOL:automatic] xref: EMAPA:18963 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004830 ! implied link automatically realized ! respiratory system skeletal muscle relationship: part_of UBERON:0001042 intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: part_of UBERON:0001042 ! chordate pharynx [Term] id: UBERON:0003385 name: skeletal muscle of mesenchyme def: "A portion of skeletal muscle tissue that is part of a mesenchyme [Obol]." [OBOL:automatic] synonym: "mesenchyme skeletal muscle" EXACT [OBOL:automatic] synonym: "mesenchyme skeletal muscle tissue" EXACT [OBOL:automatic] synonym: "skeletal muscle tissue of mesenchyme" EXACT [OBOL:automatic] xref: EMAPA:19066 xref: EMAPA:19071 is_a: UBERON:0001134 ! implied link automatically realized ! skeletal muscle tissue relationship: part_of UBERON:0003104 intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: part_of UBERON:0003104 ! mesenchyme [Term] id: UBERON:0003386 name: smooth muscle of eye def: "A portion of smooth muscle tissue that is part of a eye [Obol]." [OBOL:automatic] xref: EMAPA:18807 is_a: UBERON:0001135 ! implied link automatically realized ! smooth muscle tissue relationship: part_of UBERON:0000019 intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0000019 ! camera-type eye [Term] id: UBERON:0003387 name: smooth muscle of trachea alt_id: UBERON:0004244 def: "A portion of smooth muscle tissue that is part of a trachea [Obol]." [OBOL:automatic] synonym: "trachea smooth muscle" EXACT [MA:0001863] synonym: "tracheal smooth muscle" EXACT [BTO:0001391] xref: BTO:0001391 xref: EMAPA:19192 xref: FMA:262010 xref: MA:0001863 is_a: UBERON:0004233 ! implied link automatically realized ! lower respiratory tract smooth muscle relationship: part_of UBERON:0003126 intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0003126 ! trachea [Term] id: UBERON:0003388 name: mesothelium of pericardial cavity def: "A mesothelium that is part of a pericardial cavity [Obol]." [OBOL:automatic] synonym: "cavity of pericardial sac meso-epithelium" EXACT [OBOL:automatic] synonym: "cavity of pericardial sac mesothelium" EXACT [OBOL:automatic] synonym: "meso-epithelium of cavity of pericardial sac" EXACT [OBOL:automatic] synonym: "meso-epithelium of pericardial cavity" EXACT [OBOL:automatic] synonym: "mesothelium of cavity of pericardial sac" EXACT [OBOL:automatic] synonym: "pericardial cavity meso-epithelium" EXACT [OBOL:automatic] synonym: "pericardial cavity mesothelium" EXACT [OBOL:automatic] xref: EHDAA2:0001436 xref: EMAPA:18449 is_a: UBERON:0001136 ! implied link automatically realized ! mesothelium relationship: part_of UBERON:0001074 intersection_of: UBERON:0001136 ! mesothelium intersection_of: part_of UBERON:0001074 ! pericardial cavity [Term] id: UBERON:0003389 name: mesothelium of diaphragm def: "A mesothelium that is part of a diaphragm [Obol]." [OBOL:automatic] synonym: "diaphragm meso-epithelium" EXACT [OBOL:automatic] synonym: "diaphragm mesothelium" EXACT [OBOL:automatic] synonym: "meso-epithelium of diaphragm" EXACT [OBOL:automatic] synonym: "meso-epithelium of thoracic diaphragm" EXACT [OBOL:automatic] synonym: "mesothelium of thoracic diaphragm" EXACT [OBOL:automatic] synonym: "thoracic diaphragm meso-epithelium" EXACT [OBOL:automatic] synonym: "thoracic diaphragm mesothelium" EXACT [OBOL:automatic] xref: EMAPA:18429 is_a: UBERON:0001136 ! implied link automatically realized ! mesothelium is_a: UBERON:0004807 ! implied link automatically realized ! respiratory system epithelium relationship: part_of UBERON:0001103 intersection_of: UBERON:0001136 ! mesothelium intersection_of: part_of UBERON:0001103 ! diaphragm [Term] id: UBERON:0003390 name: mesothelium of pleural cavity def: "A mesothelium that is part of a pleural cavity [Obol]." [OBOL:automatic] synonym: "meso-epithelium of pleural cavity" EXACT [OBOL:automatic] synonym: "pleural cavity meso-epithelium" EXACT [OBOL:automatic] synonym: "pleural cavity mesothelium" EXACT [OBOL:automatic] xref: BTO:0003155 xref: EHDAA2:0001476 xref: EMAPA:18463 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001136 ! implied link automatically realized ! mesothelium is_a: UBERON:0004815 ! implied link automatically realized ! lower respiratory tract epithelium relationship: part_of UBERON:0002402 intersection_of: UBERON:0001136 ! mesothelium intersection_of: part_of UBERON:0002402 ! pleural cavity [Term] id: UBERON:0003391 name: lip of upper jaw def: "A lip that is part of a upper jaw [Obol]." [OBOL:automatic] synonym: "lip of palatoquadrate arch" EXACT [OBOL:automatic] synonym: "palatoquadrate arch lip" EXACT [OBOL:automatic] synonym: "upper jaw lip" EXACT [OBOL:automatic] xref: EMAPA:17925 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0001833 ! implied link automatically realized ! lip relationship: part_of UBERON:0001709 intersection_of: UBERON:0001833 ! lip intersection_of: part_of UBERON:0001709 ! upper jaw [Term] id: UBERON:0003392 name: lip of lower jaw def: "A lip that is part of a lower jaw [Obol]." [OBOL:automatic] synonym: "lip of ventral mandibular arch" EXACT [OBOL:automatic] synonym: "lower jaw lip" EXACT [OBOL:automatic] synonym: "ventral mandibular arch lip" EXACT [OBOL:automatic] xref: EMAPA:17909 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0001833 ! implied link automatically realized ! lip relationship: part_of UBERON:0001710 intersection_of: UBERON:0001833 ! lip intersection_of: part_of UBERON:0001710 ! lower jaw [Term] id: UBERON:0003393 name: mesentery of urinary system def: "A mesentery that is part of a urinary system [Obol]." [OBOL:automatic] synonym: "excretory system mesentery" EXACT [OBOL:automatic] synonym: "mesentery of excretory system" EXACT [OBOL:automatic] synonym: "mesentery of renal system" EXACT [OBOL:automatic] synonym: "mesentery of systema urinaria" EXACT [OBOL:automatic] synonym: "renal system mesentery" EXACT [OBOL:automatic] synonym: "systema urinaria mesentery" EXACT [OBOL:automatic] synonym: "urinary system mesentery" EXACT [OBOL:automatic] xref: EMAPA:17367 is_a: UBERON:0002095 ! implied link automatically realized ! mesentery is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0001008 intersection_of: UBERON:0002095 ! mesentery intersection_of: part_of UBERON:0001008 ! excretory system [Term] id: UBERON:0003394 name: mesentery of hindgut def: "A mesentery that is part of a hindgut [Obol]." [OBOL:automatic] synonym: "hindgut mesentery" EXACT [OBOL:automatic] xref: EMAPA:16718 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002095 ! implied link automatically realized ! mesentery relationship: part_of UBERON:0001046 intersection_of: UBERON:0002095 ! mesentery intersection_of: part_of UBERON:0001046 ! hindgut [Term] id: UBERON:0003395 name: mesentery of rectum def: "A mesentery that is part of a rectum [Obol]." [OBOL:automatic] synonym: "rectum mesentery" EXACT [OBOL:automatic] xref: EMAPA:18664 xref: EMAPA:18929 is_a: UBERON:0003334 ! implied link automatically realized ! serosa of rectum is_a: UBERON:0004854 ! implied link automatically realized ! gastrointestinal system mesentery relationship: part_of UBERON:0001052 intersection_of: UBERON:0002095 ! mesentery intersection_of: part_of UBERON:0001052 ! rectum [Term] id: UBERON:0003396 name: mesentery of colon def: "A mesentery that is part of a colon [Obol]." [OBOL:automatic] synonym: "colon mesentery" EXACT [OBOL:automatic] synonym: "large bowel mesentery" EXACT [OBOL:automatic] synonym: "large intestinal mesentery" EXACT [FMA:14645] synonym: "mesentery of large bowel" EXACT [OBOL:automatic] synonym: "mesentery of large intestine" EXACT [FMA:14645] xref: EMAPA:18942 xref: FMA:14645 xref: SCTID:245457004 is_a: UBERON:0003335 ! implied link automatically realized ! serosa of colon is_a: UBERON:0004854 ! implied link automatically realized ! gastrointestinal system mesentery is_a: UBERON:0007826 {source="FMA"} ! peritoneal mesentery relationship: part_of UBERON:0001155 intersection_of: UBERON:0002095 ! mesentery intersection_of: part_of UBERON:0001155 ! colon [Term] id: UBERON:0003397 name: mesentery of duodenum def: "A mesentery that is part of a duodenum [Obol]." [OBOL:automatic] synonym: "duodenum mesentery" EXACT [OBOL:automatic] xref: EMAPA:19081 is_a: UBERON:0001170 ! implied link automatically realized ! mesentery of small intestine is_a: UBERON:0003336 ! implied link automatically realized ! serosa of duodenum relationship: part_of UBERON:0002114 intersection_of: UBERON:0002095 ! mesentery intersection_of: part_of UBERON:0002114 ! duodenum [Term] id: UBERON:0003398 name: mesentery of jejunum def: "A mesentery that is part of a jejunum [Obol]." [OBOL:automatic] synonym: "jejunal mesentery" EXACT [] synonym: "jejunum mesentery" EXACT [] synonym: "mesojejunum" EXACT [http://www.vivo.colostate.edu/hbooks/pathphys/misc_topics/peritoneum.html] xref: EMAPA:18670 xref: EMAPA:18937 xref: FMA:14651 xref: SCTID:261286003 is_a: UBERON:0001170 ! implied link automatically realized ! mesentery of small intestine is_a: UBERON:0003337 ! implied link automatically realized ! serosa of jejunum relationship: part_of UBERON:0002115 intersection_of: UBERON:0002095 ! mesentery intersection_of: part_of UBERON:0002115 ! jejunum [Term] id: UBERON:0003403 name: skin of forearm def: "A zone of skin that is part of a lower arm [Obol]." [OBOL:automatic] synonym: "antebrachial region skin" EXACT [OBOL:automatic] synonym: "arm middle limb segment skin" EXACT [OBOL:automatic] synonym: "arm zeugopod skin" EXACT [OBOL:automatic] synonym: "brachial region middle limb segment skin" EXACT [OBOL:automatic] synonym: "brachial region zeugopod skin" EXACT [OBOL:automatic] synonym: "forearm skin" EXACT [FMA:38265] synonym: "intermediate segment of free upper limb skin" EXACT [OBOL:automatic] synonym: "lower arm skin" EXACT [OBOL:automatic] synonym: "lower segment of arm skin" EXACT [OBOL:automatic] synonym: "middle limb segment of arm skin" EXACT [OBOL:automatic] synonym: "middle limb segment of brachial region skin" EXACT [OBOL:automatic] synonym: "middle limb segment of proximal segment of free upper limb skin" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb middle limb segment skin" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb zeugopod skin" EXACT [OBOL:automatic] synonym: "skin of antebrachial region" EXACT [OBOL:automatic] synonym: "skin of arm middle limb segment" EXACT [OBOL:automatic] synonym: "skin of arm zeugopod" EXACT [OBOL:automatic] synonym: "skin of brachial region middle limb segment" EXACT [OBOL:automatic] synonym: "skin of brachial region zeugopod" EXACT [OBOL:automatic] synonym: "skin of intermediate segment of free upper limb" EXACT [OBOL:automatic] synonym: "skin of lower arm" EXACT [OBOL:automatic] synonym: "skin of lower segment of arm" EXACT [OBOL:automatic] synonym: "skin of middle limb segment of arm" EXACT [OBOL:automatic] synonym: "skin of middle limb segment of brachial region" EXACT [OBOL:automatic] synonym: "skin of middle limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "skin of proximal segment of free upper limb middle limb segment" EXACT [OBOL:automatic] synonym: "skin of proximal segment of free upper limb zeugopod" EXACT [OBOL:automatic] synonym: "skin of zeugopod of arm" EXACT [OBOL:automatic] synonym: "skin of zeugopod of brachial region" EXACT [OBOL:automatic] synonym: "skin of zeugopod of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "zeugopod of arm skin" EXACT [OBOL:automatic] synonym: "zeugopod of brachial region skin" EXACT [OBOL:automatic] synonym: "zeugopod of proximal segment of free upper limb skin" EXACT [OBOL:automatic] xref: EMAPA:18056 xref: FMA:38265 xref: MA:0000602 xref: SCTID:181537008 is_a: UBERON:0002427 ! implied link automatically realized ! arm skin relationship: part_of UBERON:0002386 intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0002386 ! forelimb zeugopod [Term] id: UBERON:0003404 name: lobar bronchus of right lung def: "A lobar bronchus that is part of a right lung [Obol]." [OBOL:automatic] synonym: "right lung lobar bronchus" EXACT [OBOL:automatic] synonym: "right lung secondary bronchus" EXACT [OBOL:automatic] synonym: "secondary bronchus of right lung" EXACT [OBOL:automatic] xref: EMAPA:17664 is_a: UBERON:0002183 ! implied link automatically realized ! lobar bronchus relationship: part_of UBERON:0002167 intersection_of: UBERON:0002183 ! lobar bronchus intersection_of: part_of UBERON:0002167 ! right lung [Term] id: UBERON:0003405 name: lobar bronchus of left lung def: "A lobar bronchus that is part of a left lung [Obol]." [OBOL:automatic] synonym: "left lung lobar bronchus" EXACT [OBOL:automatic] synonym: "left lung secondary bronchus" EXACT [OBOL:automatic] synonym: "secondary bronchus of left lung" EXACT [OBOL:automatic] xref: EMAPA:17656 is_a: UBERON:0002183 ! implied link automatically realized ! lobar bronchus relationship: part_of UBERON:0002168 intersection_of: UBERON:0002183 ! lobar bronchus intersection_of: part_of UBERON:0002168 ! left lung [Term] id: UBERON:0003406 name: cartilage of respiratory system def: "A cartilage that is part of a respiratory system [Obol]." [OBOL:automatic] synonym: "apparatus respiratorius cartilage" EXACT [OBOL:automatic] synonym: "cartilage of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "respiratory system cartilage" EXACT [OBOL:automatic] xref: EMAPA:18694 xref: MA:0001818 is_a: UBERON:0002418 ! implied link automatically realized ! cartilage tissue is_a: UBERON:0003570 ! implied link automatically realized ! respiratory system connective tissue relationship: part_of UBERON:0001004 intersection_of: UBERON:0002418 ! cartilage tissue intersection_of: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0003407 name: cartilage of nasal septum def: "A cartilage that is part of a nasal septum [Obol]." [OBOL:automatic] synonym: "cartilago septal nasi" EXACT [FMA:59503] synonym: "nasal septum cartilage" EXACT [OBOL:automatic] synonym: "septal nasal cartilage" EXACT [FMA:59503] xref: EMAPA:25091 xref: FMA:59503 is_a: UBERON:0001823 ! implied link automatically realized ! nasal cartilage relationship: part_of UBERON:0001706 intersection_of: UBERON:0002418 ! cartilage tissue intersection_of: part_of UBERON:0001706 ! nasal septum [Term] id: UBERON:0003408 name: gland of gut def: "A gland that is part of a digestive tract [Obol]." [OBOL:automatic] synonym: "digestive tract gland" EXACT [OBOL:automatic] synonym: "gland of digestive tract" EXACT [OBOL:automatic] synonym: "gland of lower gastrointestinal tract" EXACT [OBOL:automatic] synonym: "gut gland" EXACT [OBOL:automatic] synonym: "lower gastrointestinal tract gland" EXACT [OBOL:automatic] xref: EMAPA:18815 is_a: UBERON:0002530 ! implied link automatically realized ! gland is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: part_of UBERON:0001555 intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0001555 ! digestive tract [Term] id: UBERON:0003409 name: gland of tongue def: "A gland that is part of a tongue [Obol]." [OBOL:automatic] synonym: "tongue gland" EXACT [OBOL:automatic] xref: EMAPA:25097 is_a: UBERON:0003408 ! implied link automatically realized ! gland of gut is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001723 intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0001723 ! tongue [Term] id: UBERON:0003410 name: oropharyngeal gland def: "A gland that is part of a oropharynx [Obol]." [OBOL:automatic] subset: organ_slim synonym: "gland of oral part of pharynx" EXACT [OBOL:automatic] synonym: "gland of oropharynx" EXACT [EMAPA:25095] synonym: "oral part of pharynx gland" EXACT [OBOL:automatic] synonym: "oropharynx gland" EXACT [OBOL:automatic] xref: EMAPA:25095 is_a: UBERON:0003295 ! implied link automatically realized ! pharyngeal gland relationship: part_of UBERON:0001729 intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0001729 ! oropharynx [Term] id: UBERON:0003411 name: mesenchyme of amnion def: "A mesenchyme that is part of an amnion [Obol]." [OBOL:automatic] synonym: "amnion mesenchyme" EXACT [OBOL:automatic] xref: EMAPA:16265 is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0000305 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0000305 ! amnion [Term] id: UBERON:0003412 name: hindlimb bud mesenchyme synonym: "leg mesenchyme" EXACT [OBOL:automatic] xref: EMAPA:17255 is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue relationship: part_of UBERON:0005418 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0005418 ! hindlimb bud [Term] id: UBERON:0003413 name: forelimb bud mesenchyme alt_id: UBERON:0005703 synonym: "arm mesenchyme" EXACT [OBOL:automatic] synonym: "wing mesenchyme" NARROW [OBOL:automatic] xref: EHDAA:1703 xref: EHDAA2:0002135 xref: EMAPA:17244 is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue relationship: part_of UBERON:0005417 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0005417 ! forelimb bud [Term] id: UBERON:0003414 name: mesenchyme of mandible def: "A mesenchyme that is part of a mandible [Obol]." [OBOL:automatic] synonym: "bone of lower jaw mesenchyme" EXACT [OBOL:automatic] synonym: "bone of ventral mandibular arch mesenchyme" EXACT [OBOL:automatic] synonym: "bone organ of lower jaw mesenchyme" EXACT [OBOL:automatic] synonym: "bone organ of ventral mandibular arch mesenchyme" EXACT [OBOL:automatic] synonym: "lower jaw bone mesenchyme" EXACT [OBOL:automatic] synonym: "lower jaw bone organ mesenchyme" EXACT [OBOL:automatic] synonym: "mandible mesenchyme" EXACT [OBOL:automatic] synonym: "mandibulla mesenchyme" EXACT [OBOL:automatic] synonym: "mesenchyme of bone of lower jaw" EXACT [OBOL:automatic] synonym: "mesenchyme of bone of ventral mandibular arch" EXACT [OBOL:automatic] synonym: "mesenchyme of bone organ of lower jaw" EXACT [OBOL:automatic] synonym: "mesenchyme of bone organ of ventral mandibular arch" EXACT [OBOL:automatic] synonym: "mesenchyme of lower jaw bone" EXACT [OBOL:automatic] synonym: "mesenchyme of lower jaw bone organ" EXACT [OBOL:automatic] synonym: "mesenchyme of mandibulla" EXACT [OBOL:automatic] synonym: "mesenchyme of ventral mandibular arch bone" EXACT [OBOL:automatic] synonym: "mesenchyme of ventral mandibular arch bone organ" EXACT [OBOL:automatic] synonym: "ventral mandibular arch bone mesenchyme" EXACT [OBOL:automatic] synonym: "ventral mandibular arch bone organ mesenchyme" EXACT [OBOL:automatic] xref: EMAPA:17912 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0003324 ! implied link automatically realized ! mesenchyme of lower jaw relationship: part_of UBERON:0001684 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001684 ! mandible [Term] id: UBERON:0003415 name: mesenchyme of nasal septum def: "A mesenchyme that is part of a nasal septum [Obol]." [OBOL:automatic] synonym: "nasal septum mesenchyme" EXACT [OBOL:automatic] xref: EMAPA:18443 is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001706 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001706 ! nasal septum [Term] id: UBERON:0003416 name: mesenchyme of tongue def: "A mesenchyme that is part of a tongue [Obol]." [OBOL:automatic] comment: todo - develops_from synonym: "tongue mesenchyme" EXACT [EHDAA2:0004614] xref: EHDAA2:0004614 xref: EMAPA:17882 xref: EMAPA:18878 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme relationship: part_of UBERON:0001723 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001723 ! tongue [Term] id: UBERON:0003417 name: mesenchyme of soft palate def: "A mesenchyme that is part of a soft palate [Obol]." [OBOL:automatic] synonym: "soft palate mesenchyme" EXACT [OBOL:automatic] xref: EMAPA:18951 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0003323 ! implied link automatically realized ! mesenchyme of upper jaw relationship: part_of UBERON:0001733 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001733 ! soft palate [Term] id: UBERON:0003418 name: mesenchyme of submandibular gland def: "A mesenchyme that is part of a submandibular gland [Obol]." [OBOL:automatic] synonym: "submandibular gland mesenchyme" EXACT [OBOL:automatic] xref: EMAPA:18814 xref: OG:0001110 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme relationship: part_of UBERON:0001736 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001736 ! submandibular gland [Term] id: UBERON:0003419 name: mesenchyme of parotid def: "A mesenchyme that is part of a parotid gland [Obol]." [OBOL:automatic] synonym: "mesenchyme of parotid gland" EXACT [OBOL:automatic] synonym: "parotid gland mesenchyme" EXACT [OBOL:automatic] synonym: "parotid mesenchyme" EXACT [OBOL:automatic] xref: EMAPA:18539 xref: OG:0001435 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme relationship: part_of UBERON:0001831 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001831 ! parotid gland [Term] id: UBERON:0003420 name: mesenchyme of sublingual gland def: "A mesenchyme that is part of a sublingual gland [Obol]." [OBOL:automatic] synonym: "ductus sublingualis mesenchyme" EXACT [OBOL:automatic] synonym: "mesenchyme of ductus sublingualis" EXACT [OBOL:automatic] synonym: "mesenchyme of Rivinus'gland" EXACT [OBOL:automatic] synonym: "Rivinus'gland mesenchyme" EXACT [OBOL:automatic] synonym: "sublingual gland mesenchyme" EXACT [OBOL:automatic] xref: EMAPA:18811 xref: OG:0001106 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme relationship: part_of UBERON:0001832 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001832 ! sublingual gland [Term] id: UBERON:0003421 name: mesenchyme of vomeronasal organ def: "A mesenchyme that is part of a vomeronasal organ [Obol]." [OBOL:automatic] synonym: "Jacobson's organ mesenchyme" EXACT [OBOL:automatic] synonym: "mesenchyme of Jacobson's organ" EXACT [OBOL:automatic] synonym: "vomeronasal mesenchyme" EXACT [EHDAA2:0004103] synonym: "vomeronasal organ mesenchyme" EXACT [OBOL:automatic] xref: EHDAA2:0004103 xref: EMAPA:18445 is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme relationship: part_of UBERON:0002255 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0002255 ! vomeronasal organ relationship: develops_from UBERON:0009204 {source="EHDAA2"} ! medial nasal process mesenchyme [Term] id: UBERON:0003422 name: mesenchyme of umbilical cord def: "a gelatinous substance within the umbilical cord, largely made up of mucopolysaccharides (hyaluronic acid and chondroitin sulfate). It also contains some fibroblasts and macrophages. It is derived from Extra Embryonic Mesoderm[WP]" [Wikipedia:Wharton's_jelly] comment: todo - check synonym: "umbilical cord mesenchyme" EXACT [OBOL:automatic] synonym: "Wharton's jelly" EXACT [EMAPA:26127] xref: EMAPA:26127 xref: SCTID:368069009 is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme relationship: part_of UBERON:0002331 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0002331 ! umbilical cord [Term] id: UBERON:0003423 name: mesenchyme of chorion def: "A mesenchyme that is part of a chorion [Obol]." [OBOL:automatic] synonym: "chorion mesenchyme" EXACT [OBOL:automatic] synonym: "mesenchyme of chorion (vertebrates)" EXACT [OBOL:automatic] xref: EHDAA2:0003245 xref: EMAPA:16266 is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme relationship: part_of UBERON:0003124 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0003124 ! chorion [Term] id: UBERON:0003424 name: mesenchyme of hard palate def: "A mesenchyme that is part of a hard palate [Obol]." [OBOL:automatic] synonym: "hard palate mesenchyme" EXACT [OBOL:automatic] xref: EMAPA:18954 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0003323 ! implied link automatically realized ! mesenchyme of upper jaw relationship: part_of UBERON:0003216 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0003216 ! hard palate [Term] id: UBERON:0003425 name: renal lymph node def: "A lymph node that is part of a kidney [Obol]." [OBOL:automatic] synonym: "kidney lymph node" EXACT [OBOL:automatic] synonym: "lymph node of kidney" EXACT [OBOL:automatic] xref: MA:0002882 xref: ncithesaurus:Renal_Lymph_Node is_a: UBERON:0002507 ! implied link automatically realized ! abdominal lymph node is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0002113 intersection_of: UBERON:0000029 ! lymph node intersection_of: part_of UBERON:0002113 ! kidney [Term] id: UBERON:0003426 name: dermis adipose tissue def: "An adipose tissue that is part of a dermis [Obol]." [OBOL:automatic] synonym: "adipose tissue of dermis" EXACT [OBOL:automatic] synonym: "dermis fat tissue" EXACT [OBOL:automatic] synonym: "dermis fatty tissue" EXACT [OBOL:automatic] synonym: "fat tissue of dermis" EXACT [OBOL:automatic] synonym: "fatty tissue of dermis" EXACT [OBOL:automatic] xref: MA:0000798 is_a: UBERON:0001013 ! implied link automatically realized ! adipose tissue is_a: UBERON:0003585 ! implied link automatically realized ! dermis connective tissue relationship: part_of UBERON:0002067 intersection_of: UBERON:0001013 ! adipose tissue intersection_of: part_of UBERON:0002067 ! dermis [Term] id: UBERON:0003427 name: abdominal fat pad def: "the encapsulated adipose tissue in the abdomen." [MP:0000010] synonym: "abdomen fat pad" EXACT [OBOL:automatic] synonym: "fat pad of abdomen" EXACT [OBOL:automatic] xref: MA:0000472 is_a: UBERON:0003567 ! implied link automatically realized ! abdomen connective tissue is_a: UBERON:0003916 ! implied link automatically realized ! fat pad relationship: part_of UBERON:0000916 intersection_of: UBERON:0003916 ! fat pad intersection_of: part_of UBERON:0000916 ! abdomen [Term] id: UBERON:0003428 name: gonadal fat pad def: "the encapsulated adipose tissue associated with the ovaries or testes." [MP:0005335] synonym: "fat pad of gonad" EXACT [OBOL:automatic] synonym: "fat pad of gonada" EXACT [OBOL:automatic] synonym: "gonad fat pad" EXACT [OBOL:automatic] synonym: "gonada fat pad" EXACT [OBOL:automatic] xref: MA:0002547 is_a: UBERON:0003916 ! implied link automatically realized ! fat pad is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0000991 intersection_of: UBERON:0003916 ! fat pad intersection_of: part_of UBERON:0000991 ! gonad [Term] id: UBERON:0003429 name: abdomen nerve def: "A nerve that is part of an abdomen [Obol]." [OBOL:automatic] synonym: "nerve of abdomen" EXACT [OBOL:automatic] xref: MA:0000521 is_a: UBERON:0003825 ! implied link automatically realized ! abdominal segment nerve relationship: part_of UBERON:0000916 intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0000916 ! abdomen [Term] id: UBERON:0003430 name: neck nerve def: "A nerve that is part of a neck [Obol]." [OBOL:automatic] synonym: "neck (volume) nerve" EXACT [OBOL:automatic] synonym: "nerve of neck" EXACT [OBOL:automatic] synonym: "nerve of neck (volume)" EXACT [OBOL:automatic] xref: MA:0000588 is_a: UBERON:0001021 ! implied link automatically realized ! nerve relationship: part_of UBERON:0000974 intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0000974 ! neck [Term] id: UBERON:0003431 name: leg nerve def: "A nerve that is part of a leg [Obol]." [OBOL:automatic] synonym: "nerve of leg" EXACT [OBOL:automatic] xref: MA:0000673 is_a: UBERON:0003442 ! implied link automatically realized ! hindlimb nerve relationship: part_of UBERON:0000978 intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0000978 ! leg [Term] id: UBERON:0003432 name: chest nerve def: "A nerve that is part of a chest [Obol]." [OBOL:automatic] synonym: "anterior thoracic region nerve" EXACT [OBOL:automatic] synonym: "anterolateral part of thorax nerve" EXACT [OBOL:automatic] synonym: "front of thorax nerve" EXACT [OBOL:automatic] synonym: "nerve of anterior thoracic region" EXACT [OBOL:automatic] synonym: "nerve of anterolateral part of thorax" EXACT [OBOL:automatic] synonym: "nerve of chest" EXACT [OBOL:automatic] synonym: "nerve of front of thorax" EXACT [OBOL:automatic] xref: MA:0000551 is_a: UBERON:0003824 ! implied link automatically realized ! thoracic segment nerve relationship: part_of UBERON:0001443 intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0001443 ! chest [Term] id: UBERON:0003433 name: arm nerve def: "A nerve that is part of an arm [Obol]." [OBOL:automatic] synonym: "brachial region nerve" EXACT [OBOL:automatic] synonym: "nerve of arm" EXACT [OBOL:automatic] synonym: "nerve of brachial region" EXACT [OBOL:automatic] synonym: "nerve of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb nerve" EXACT [OBOL:automatic] xref: MA:0000595 is_a: UBERON:0003441 ! implied link automatically realized ! forelimb nerve relationship: part_of UBERON:0001460 intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0001460 ! arm [Term] id: UBERON:0003434 name: wrist nerve def: "A nerve that is part of a wrist [Obol]." [OBOL:automatic] synonym: "carpal region nerve" EXACT [OBOL:automatic] synonym: "nerve of carpal region" EXACT [OBOL:automatic] synonym: "nerve of wrist" EXACT [OBOL:automatic] xref: MA:0000637 is_a: UBERON:0003441 ! implied link automatically realized ! forelimb nerve relationship: part_of UBERON:0001462 intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0001462 ! wrist [Term] id: UBERON:0003435 name: foot digit nerve def: "A nerve that is part of a toe [Obol]." [OBOL:automatic] synonym: "digit of foot nerve" EXACT [OBOL:automatic] synonym: "digit of terminal segment of free lower limb nerve" EXACT [OBOL:automatic] synonym: "digitus pedis nerve" EXACT [OBOL:automatic] synonym: "nerve of digit of foot" EXACT [OBOL:automatic] synonym: "nerve of digit of terminal segment of free lower limb" EXACT [OBOL:automatic] synonym: "nerve of digitus pedis" EXACT [OBOL:automatic] synonym: "nerve of foot digit" EXACT [OBOL:automatic] synonym: "nerve of terminal segment of free lower limb digit" EXACT [OBOL:automatic] synonym: "nerve of toe" EXACT [OBOL:automatic] synonym: "terminal segment of free lower limb digit nerve" EXACT [OBOL:automatic] synonym: "toe nerve" EXACT [OBOL:automatic] xref: MA:0000649 xref: SCTID:300056004 is_a: UBERON:0003445 ! implied link automatically realized ! foot nerve relationship: part_of UBERON:0001466 intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0001466 ! foot digit [Term] id: UBERON:0003436 name: shoulder nerve def: "A nerve that is part of a shoulder [Obol]." [OBOL:automatic] synonym: "nerve of shoulder" EXACT [OBOL:automatic] xref: MA:0000634 is_a: UBERON:0003441 ! implied link automatically realized ! forelimb nerve relationship: part_of UBERON:0001467 intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0001467 ! shoulder [Term] id: UBERON:0003437 name: eyelid nerve def: "A nerve that is part of a eyelid [Obol]." [OBOL:automatic] synonym: "blepharon nerve" EXACT [OBOL:automatic] synonym: "nerve of blepharon" EXACT [OBOL:automatic] synonym: "nerve of eyelid" EXACT [OBOL:automatic] xref: MA:0001255 is_a: UBERON:0001647 ! implied link automatically realized ! facial nerve relationship: part_of UBERON:0001711 intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0001711 ! eyelid [Term] id: UBERON:0003438 name: iris nerve def: "A nerve that is part of a iris [Obol]." [OBOL:automatic] synonym: "nerve of iris" EXACT [OBOL:automatic] xref: MA:0001291 is_a: UBERON:0001647 ! implied link automatically realized ! facial nerve relationship: part_of UBERON:0001769 intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0001769 ! iris [Term] id: UBERON:0003439 name: trunk nerve def: "A nerve that is part of a trunk [Obol]." [OBOL:automatic] synonym: "nerve of torso" EXACT [OBOL:automatic] synonym: "nerve of trunk" EXACT [OBOL:automatic] synonym: "torso nerve" EXACT [OBOL:automatic] xref: EMAPA:16986 xref: MA:0000515 is_a: UBERON:0001021 ! implied link automatically realized ! nerve relationship: part_of UBERON:0002100 intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0002100 ! trunk [Term] id: UBERON:0003440 name: limb nerve def: "A nerve that is part of a limb [Obol]." [OBOL:automatic] synonym: "nerve of limb" EXACT [OBOL:automatic] xref: MA:0000693 is_a: UBERON:0001021 ! implied link automatically realized ! nerve is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0002101 intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0002101 ! limb [Term] id: UBERON:0003441 name: forelimb nerve def: "A nerve that is part of a forelimb [Obol]." [OBOL:automatic] synonym: "anteriormost limb nerve" EXACT [OBOL:automatic] synonym: "fore limb nerve" EXACT [OBOL:automatic] synonym: "nerve of anteriormost limb" EXACT [OBOL:automatic] synonym: "nerve of fore limb" EXACT [OBOL:automatic] synonym: "nerve of forelimb" EXACT [OBOL:automatic] synonym: "nerve of superior member" EXACT [OBOL:automatic] synonym: "nerve of upper extremity" EXACT [OBOL:automatic] synonym: "superior member nerve" EXACT [OBOL:automatic] synonym: "upper extremity nerve" EXACT [OBOL:automatic] xref: MA:0000616 is_a: UBERON:0003440 ! implied link automatically realized ! limb nerve relationship: part_of UBERON:0002102 intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0002102 ! forelimb [Term] id: UBERON:0003442 name: hindlimb nerve def: "A nerve that is part of a hindlimb [Obol]." [OBOL:automatic] synonym: "hind limb nerve" EXACT [OBOL:automatic] synonym: "inferior member nerve" EXACT [OBOL:automatic] synonym: "lower extremity nerve" EXACT [OBOL:automatic] synonym: "nerve of hind limb" EXACT [OBOL:automatic] synonym: "nerve of hindlimb" EXACT [OBOL:automatic] synonym: "nerve of inferior member" EXACT [OBOL:automatic] synonym: "nerve of lower extremity" EXACT [OBOL:automatic] xref: MA:0000664 is_a: UBERON:0003440 ! implied link automatically realized ! limb nerve relationship: part_of UBERON:0002103 intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0003443 name: thoracic cavity nerve def: "A nerve that is part of a thoracic cavity [Obol]." [OBOL:automatic] synonym: "cavity of chest nerve" EXACT [OBOL:automatic] synonym: "cavity of thorax nerve" EXACT [OBOL:automatic] synonym: "chest cavity nerve" EXACT [OBOL:automatic] synonym: "nerve of cavity of chest" EXACT [OBOL:automatic] synonym: "nerve of cavity of thorax" EXACT [OBOL:automatic] synonym: "nerve of chest cavity" EXACT [OBOL:automatic] synonym: "nerve of pectoral cavity" EXACT [OBOL:automatic] synonym: "nerve of thoracic cavity" EXACT [OBOL:automatic] synonym: "pectoral cavity nerve" EXACT [OBOL:automatic] xref: MA:0000556 is_a: UBERON:0003824 ! implied link automatically realized ! thoracic segment nerve relationship: part_of UBERON:0002224 intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0002224 ! thoracic cavity [Term] id: UBERON:0003444 name: pelvis nerve def: "A nerve that is part of a pelvis [Obol]." [OBOL:automatic] synonym: "nerve of pelvis" EXACT [OBOL:automatic] xref: MA:0000542 is_a: UBERON:0003825 ! implied link automatically realized ! abdominal segment nerve relationship: part_of UBERON:0002355 intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0002355 ! pelvis [Term] id: UBERON:0003445 name: foot nerve def: "A nerve that is part of a foot [Obol]." [OBOL:automatic] synonym: "autopod of hind limb nerve" EXACT [OBOL:automatic] synonym: "autopod of hindlimb nerve" EXACT [OBOL:automatic] synonym: "autopod of inferior member nerve" EXACT [OBOL:automatic] synonym: "autopod of lower extremity nerve" EXACT [OBOL:automatic] synonym: "distal free limb segment of hind limb nerve" EXACT [OBOL:automatic] synonym: "distal free limb segment of hindlimb nerve" EXACT [OBOL:automatic] synonym: "distal free limb segment of inferior member nerve" EXACT [OBOL:automatic] synonym: "distal free limb segment of lower extremity nerve" EXACT [OBOL:automatic] synonym: "hind limb autopod nerve" EXACT [OBOL:automatic] synonym: "hind limb distal free limb segment nerve" EXACT [OBOL:automatic] synonym: "hindlimb autopod nerve" EXACT [OBOL:automatic] synonym: "hindlimb distal free limb segment nerve" EXACT [OBOL:automatic] synonym: "inferior member autopod nerve" EXACT [OBOL:automatic] synonym: "inferior member distal free limb segment nerve" EXACT [OBOL:automatic] synonym: "lower extremity autopod nerve" EXACT [OBOL:automatic] synonym: "lower extremity distal free limb segment nerve" EXACT [OBOL:automatic] synonym: "nerve of autopod of hind limb" EXACT [OBOL:automatic] synonym: "nerve of autopod of hindlimb" EXACT [OBOL:automatic] synonym: "nerve of autopod of inferior member" EXACT [OBOL:automatic] synonym: "nerve of autopod of lower extremity" EXACT [OBOL:automatic] synonym: "nerve of distal free limb segment of hind limb" EXACT [OBOL:automatic] synonym: "nerve of distal free limb segment of hindlimb" EXACT [OBOL:automatic] synonym: "nerve of distal free limb segment of inferior member" EXACT [OBOL:automatic] synonym: "nerve of distal free limb segment of lower extremity" EXACT [OBOL:automatic] synonym: "nerve of foot" EXACT [OBOL:automatic] synonym: "nerve of hind limb autopod" EXACT [OBOL:automatic] synonym: "nerve of hind limb distal free limb segment" EXACT [OBOL:automatic] synonym: "nerve of hindlimb autopod" EXACT [OBOL:automatic] synonym: "nerve of hindlimb distal free limb segment" EXACT [OBOL:automatic] synonym: "nerve of inferior member autopod" EXACT [OBOL:automatic] synonym: "nerve of inferior member distal free limb segment" EXACT [OBOL:automatic] synonym: "nerve of lower extremity autopod" EXACT [OBOL:automatic] synonym: "nerve of lower extremity distal free limb segment" EXACT [OBOL:automatic] synonym: "nerve of terminal segment of free lower limb" EXACT [OBOL:automatic] synonym: "terminal segment of free lower limb nerve" EXACT [OBOL:automatic] xref: MA:0000653 is_a: UBERON:0003442 ! implied link automatically realized ! hindlimb nerve relationship: part_of UBERON:0002387 intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0002387 ! foot [Term] id: UBERON:0003446 name: ankle nerve def: "A nerve that is part of an ankle [Obol]." [OBOL:automatic] synonym: "nerve of ankle" EXACT [OBOL:automatic] xref: MA:0000640 is_a: UBERON:0003442 ! implied link automatically realized ! hindlimb nerve relationship: part_of UBERON:0002388 intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0002388 ! ankle [Term] id: UBERON:0003447 name: hand digit nerve def: "A nerve that is part of a finger [Obol]." [OBOL:automatic] synonym: "digit of hand nerve" EXACT [OBOL:automatic] synonym: "digit of terminal segment of free upper limb nerve" EXACT [OBOL:automatic] synonym: "digitus manus nerve" EXACT [OBOL:automatic] synonym: "finger nerve" EXACT [OBOL:automatic] synonym: "nerve of digit of hand" EXACT [OBOL:automatic] synonym: "nerve of digit of terminal segment of free upper limb" EXACT [OBOL:automatic] synonym: "nerve of digitus manus" EXACT [OBOL:automatic] synonym: "nerve of finger" EXACT [OBOL:automatic] synonym: "nerve of hand digit" EXACT [OBOL:automatic] synonym: "nerve of terminal segment of free upper limb digit" EXACT [OBOL:automatic] synonym: "terminal segment of free upper limb digit nerve" EXACT [OBOL:automatic] xref: MA:0000625 xref: SCTID:181015006 is_a: UBERON:0003448 ! implied link automatically realized ! hand nerve relationship: part_of UBERON:0002389 intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0002389 ! hand digit [Term] id: UBERON:0003448 name: hand nerve def: "A nerve that is part of a hand [Obol]." [OBOL:automatic] synonym: "arm autopod nerve" EXACT [OBOL:automatic] synonym: "arm distal free limb segment nerve" EXACT [OBOL:automatic] synonym: "autopod of arm nerve" EXACT [OBOL:automatic] synonym: "autopod of brachial region nerve" EXACT [OBOL:automatic] synonym: "autopod of proximal segment of free upper limb nerve" EXACT [OBOL:automatic] synonym: "brachial region autopod nerve" EXACT [OBOL:automatic] synonym: "brachial region distal free limb segment nerve" EXACT [OBOL:automatic] synonym: "distal free limb segment of arm nerve" EXACT [OBOL:automatic] synonym: "distal free limb segment of brachial region nerve" EXACT [OBOL:automatic] synonym: "distal free limb segment of proximal segment of free upper limb nerve" EXACT [OBOL:automatic] synonym: "nerve of arm autopod" EXACT [OBOL:automatic] synonym: "nerve of arm distal free limb segment" EXACT [OBOL:automatic] synonym: "nerve of autopod of arm" EXACT [OBOL:automatic] synonym: "nerve of autopod of brachial region" EXACT [OBOL:automatic] synonym: "nerve of autopod of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "nerve of brachial region autopod" EXACT [OBOL:automatic] synonym: "nerve of brachial region distal free limb segment" EXACT [OBOL:automatic] synonym: "nerve of distal free limb segment of arm" EXACT [OBOL:automatic] synonym: "nerve of distal free limb segment of brachial region" EXACT [OBOL:automatic] synonym: "nerve of distal free limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "nerve of hand" EXACT [OBOL:automatic] synonym: "nerve of proximal segment of free upper limb autopod" EXACT [OBOL:automatic] synonym: "nerve of proximal segment of free upper limb distal free limb segment" EXACT [OBOL:automatic] synonym: "nerve of terminal segment of free upper limb" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb autopod nerve" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb distal free limb segment nerve" EXACT [OBOL:automatic] synonym: "terminal segment of free upper limb nerve" EXACT [OBOL:automatic] xref: MA:0000629 is_a: UBERON:0003441 ! implied link automatically realized ! forelimb nerve relationship: part_of UBERON:0002398 intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0002398 ! hand [Term] id: UBERON:0003449 name: tail intervertebral disc def: "A intervertebral disk that is part of a tail [Obol]." [OBOL:automatic] synonym: "intervertebral disc of post-vent region" EXACT [OBOL:automatic] synonym: "intervertebral disc of tail" EXACT [OBOL:automatic] synonym: "intervertebral disk of post-vent region" EXACT [OBOL:automatic] synonym: "intervertebral disk of tail" EXACT [OBOL:automatic] synonym: "post-vent region intervertebral disc" EXACT [OBOL:automatic] synonym: "post-vent region intervertebral disk" EXACT [OBOL:automatic] synonym: "post-vent region spinal disc" EXACT [OBOL:automatic] synonym: "spinal disc of post-vent region" EXACT [OBOL:automatic] synonym: "spinal disc of tail" EXACT [OBOL:automatic] synonym: "tail intervertebral disk" EXACT [OBOL:automatic] synonym: "tail spinal disc" EXACT [OBOL:automatic] xref: EMAPA:19592 xref: MA:0000698 is_a: UBERON:0001066 ! implied link automatically realized ! intervertebral disk relationship: part_of UBERON:0007812 intersection_of: UBERON:0001066 ! intervertebral disk intersection_of: part_of UBERON:0007812 ! post-anal tail [Term] id: UBERON:0003450 name: upper jaw incisor def: "A incisor tooth that is part of a upper jaw [Obol]." [OBOL:automatic] synonym: "incisor of palatoquadrate arch" EXACT [OBOL:automatic] synonym: "incisor of upper jaw" EXACT [OBOL:automatic] synonym: "incisor tooth of palatoquadrate arch" EXACT [OBOL:automatic] synonym: "incisor tooth of upper jaw" EXACT [OBOL:automatic] synonym: "palatoquadrate arch incisor" EXACT [OBOL:automatic] synonym: "palatoquadrate arch incisor tooth" EXACT [OBOL:automatic] synonym: "upper incisor" EXACT [OBOL:automatic, UBERON:cjm] synonym: "upper jaw incisor tooth" EXACT [OBOL:automatic] synonym: "upper primary incisor tooth" NARROW [FMA:84214] xref: EHDAA2:0002121 xref: EMAPA:17939 xref: FMA:55712 xref: MA:0001601 xref: ncithesaurus:Upper_Jaw_Incisor is_a: UBERON:0001098 ! implied link automatically realized ! incisor tooth is_a: UBERON:0003267 ! implied link automatically realized ! tooth of upper jaw relationship: part_of UBERON:0001709 intersection_of: UBERON:0001098 ! incisor tooth intersection_of: part_of UBERON:0001709 ! upper jaw [Term] id: UBERON:0003451 name: lower jaw incisor def: "A incisor tooth that is part of a lower jaw [Obol]." [OBOL:automatic] synonym: "incisor of lower jaw" EXACT [OBOL:automatic] synonym: "incisor of ventral mandibular arch" EXACT [OBOL:automatic] synonym: "incisor tooth of lower jaw" EXACT [OBOL:automatic] synonym: "incisor tooth of ventral mandibular arch" EXACT [OBOL:automatic] synonym: "lower incisor" EXACT [OBOL:automatic, UBERON:cjm] synonym: "lower jaw incisor tooth" EXACT [OBOL:automatic] synonym: "lower primary incisor tooth" NARROW [FMA:84215] synonym: "mandibular incisor" EXACT [BTO:0001942] synonym: "ventral mandibular arch incisor" EXACT [OBOL:automatic] synonym: "ventral mandibular arch incisor tooth" EXACT [OBOL:automatic] xref: BTO:0001942 xref: EHDAA2:0001021 xref: EMAPA:17918 xref: FMA:55713 xref: MA:0001600 xref: ncithesaurus:Lower_Jaw_Incisor is_a: UBERON:0001098 ! implied link automatically realized ! incisor tooth is_a: UBERON:0003268 ! implied link automatically realized ! tooth of lower jaw relationship: part_of UBERON:0001710 intersection_of: UBERON:0001098 ! incisor tooth intersection_of: part_of UBERON:0001710 ! lower jaw [Term] id: UBERON:0003452 name: trabecula carnea cardiac muscle tissue def: "A portion of cardiac muscle tissue that is part of a trabecula carnea [Obol]." [OBOL:automatic] synonym: "cardiac muscle muscle tissue of trabecula carnea" EXACT [OBOL:automatic] synonym: "cardiac muscle of trabecula carnea" EXACT [OBOL:automatic] synonym: "cardiac muscle textus muscularis of trabecula carnea" EXACT [OBOL:automatic] synonym: "cardiac muscle tissue of trabecula carnea" EXACT [OBOL:automatic] synonym: "heart muscle muscle tissue of trabecula carnea" EXACT [OBOL:automatic] synonym: "heart muscle textus muscularis of trabecula carnea" EXACT [OBOL:automatic] synonym: "heart myocardium muscle tissue of trabecula carnea" EXACT [OBOL:automatic] synonym: "heart myocardium textus muscularis of trabecula carnea" EXACT [OBOL:automatic] synonym: "muscle of heart muscle tissue of trabecula carnea" EXACT [OBOL:automatic] synonym: "muscle of heart textus muscularis of trabecula carnea" EXACT [OBOL:automatic] synonym: "muscle tissue of cardiac muscle of trabecula carnea" EXACT [OBOL:automatic] synonym: "muscle tissue of heart muscle of trabecula carnea" EXACT [OBOL:automatic] synonym: "muscle tissue of heart myocardium of trabecula carnea" EXACT [OBOL:automatic] synonym: "muscle tissue of muscle of heart of trabecula carnea" EXACT [OBOL:automatic] synonym: "muscle tissue of myocardium of trabecula carnea" EXACT [OBOL:automatic] synonym: "myocardium muscle tissue of trabecula carnea" EXACT [OBOL:automatic] synonym: "myocardium textus muscularis of trabecula carnea" EXACT [OBOL:automatic] synonym: "textus muscularis of cardiac muscle of trabecula carnea" EXACT [OBOL:automatic] synonym: "textus muscularis of heart muscle of trabecula carnea" EXACT [OBOL:automatic] synonym: "textus muscularis of heart myocardium of trabecula carnea" EXACT [OBOL:automatic] synonym: "textus muscularis of muscle of heart of trabecula carnea" EXACT [OBOL:automatic] synonym: "textus muscularis of myocardium of trabecula carnea" EXACT [OBOL:automatic] synonym: "trabecula carnea cardiac muscle" EXACT [OBOL:automatic] synonym: "trabecula carnea cardiac muscle muscle tissue" EXACT [OBOL:automatic] synonym: "trabecula carnea cardiac muscle textus muscularis" EXACT [OBOL:automatic] synonym: "trabecula carnea heart muscle muscle tissue" EXACT [OBOL:automatic] synonym: "trabecula carnea heart muscle textus muscularis" EXACT [OBOL:automatic] synonym: "trabecula carnea heart myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "trabecula carnea heart myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "trabecula carnea muscle of heart muscle tissue" EXACT [OBOL:automatic] synonym: "trabecula carnea muscle of heart textus muscularis" EXACT [OBOL:automatic] synonym: "trabecula carnea muscle tissue of cardiac muscle" EXACT [OBOL:automatic] synonym: "trabecula carnea muscle tissue of heart muscle" EXACT [OBOL:automatic] synonym: "trabecula carnea muscle tissue of heart myocardium" EXACT [OBOL:automatic] synonym: "trabecula carnea muscle tissue of muscle of heart" EXACT [OBOL:automatic] synonym: "trabecula carnea muscle tissue of myocardium" EXACT [OBOL:automatic] synonym: "trabecula carnea myocardium muscle tissue" EXACT [OBOL:automatic] synonym: "trabecula carnea myocardium textus muscularis" EXACT [OBOL:automatic] synonym: "trabecula carnea textus muscularis of cardiac muscle" EXACT [OBOL:automatic] synonym: "trabecula carnea textus muscularis of heart muscle" EXACT [OBOL:automatic] synonym: "trabecula carnea textus muscularis of heart myocardium" EXACT [OBOL:automatic] synonym: "trabecula carnea textus muscularis of muscle of heart" EXACT [OBOL:automatic] synonym: "trabecula carnea textus muscularis of myocardium" EXACT [OBOL:automatic] xref: FMA:84428 xref: MA:0002833 is_a: UBERON:0001133 ! implied link automatically realized ! cardiac muscle tissue relationship: part_of UBERON:0002511 intersection_of: UBERON:0001133 ! cardiac muscle tissue intersection_of: part_of UBERON:0002511 ! trabecula carnea [Term] id: UBERON:0003453 name: large intestine Peyer's patch def: "A Peyer ' s patch that is part of a large intestine [Obol]." [OBOL:automatic] synonym: "large intestine Peyer's patch" EXACT [OBOL:automatic] synonym: "Peyer's patch of large intestine" EXACT [OBOL:automatic] xref: MA:0001550 is_a: UBERON:0001211 ! implied link automatically realized ! Peyer's patch relationship: part_of UBERON:0000059 intersection_of: UBERON:0001211 ! Peyer's patch intersection_of: part_of UBERON:0000059 ! large intestine [Term] id: UBERON:0003454 name: small intestine Peyer's patch def: "nodular lymphoid structures on the serosal surface of the small intestine." [] synonym: "Aggregated lymphoid follicle of small intestine" EXACT [] synonym: "Peyer's patch of small bowel" EXACT [OBOL:automatic] synonym: "Peyer's patch of small intestine" EXACT [OBOL:automatic] synonym: "small bowel Peyer's patch" EXACT [OBOL:automatic] synonym: "small intestine Peyer's patch" EXACT [OBOL:automatic] xref: FMA:15054 xref: MA:0001557 is_a: UBERON:0001211 ! implied link automatically realized ! Peyer's patch relationship: part_of UBERON:0002108 intersection_of: UBERON:0001211 ! Peyer's patch intersection_of: part_of UBERON:0002108 ! small intestine [Term] id: UBERON:0003455 name: inner renal medulla loop of henle def: "A loop of Henle that is part of a inner medulla of kidney [Obol]." [OBOL:automatic] synonym: "Henle loop of inner medulla of kidney" EXACT [OBOL:automatic] synonym: "Henle loop of inner renal medulla" EXACT [OBOL:automatic] synonym: "Henle loop of inner zone of medulla of kidney" EXACT [OBOL:automatic] synonym: "Henle loop of inner zone of renal medulla" EXACT [OBOL:automatic] synonym: "henle's loop of inner medulla of kidney" EXACT [OBOL:automatic] synonym: "henle's loop of inner renal medulla" EXACT [OBOL:automatic] synonym: "henle's loop of inner zone of medulla of kidney" EXACT [OBOL:automatic] synonym: "henle's loop of inner zone of renal medulla" EXACT [OBOL:automatic] synonym: "inner medulla of kidney Henle loop" EXACT [OBOL:automatic] synonym: "inner medulla of kidney henle's loop" EXACT [OBOL:automatic] synonym: "inner medulla of kidney loop of Henle" EXACT [OBOL:automatic] synonym: "inner renal medulla Henle loop" EXACT [OBOL:automatic] synonym: "inner renal medulla henle's loop" EXACT [OBOL:automatic] synonym: "inner renal medulla loop of Henle" EXACT [OBOL:automatic] synonym: "inner zone of medulla of kidney Henle loop" EXACT [OBOL:automatic] synonym: "inner zone of medulla of kidney henle's loop" EXACT [OBOL:automatic] synonym: "inner zone of medulla of kidney loop of Henle" EXACT [OBOL:automatic] synonym: "inner zone of renal medulla Henle loop" EXACT [OBOL:automatic] synonym: "inner zone of renal medulla henle's loop" EXACT [OBOL:automatic] synonym: "inner zone of renal medulla loop of Henle" EXACT [OBOL:automatic] synonym: "loop of Henle of inner medulla of kidney" EXACT [OBOL:automatic] synonym: "loop of Henle of inner renal medulla" EXACT [OBOL:automatic] synonym: "loop of Henle of inner zone of medulla of kidney" EXACT [OBOL:automatic] synonym: "loop of Henle of inner zone of renal medulla" EXACT [OBOL:automatic] xref: MA:0002623 is_a: UBERON:0001288 ! implied link automatically realized ! loop of Henle relationship: part_of UBERON:0001294 intersection_of: UBERON:0001288 ! loop of Henle intersection_of: part_of UBERON:0001294 ! inner medulla of kidney [Term] id: UBERON:0003456 name: respiratory system lymphatic vessel def: "A lymphatic vessel that is part of a respiratory system [Obol]." [OBOL:automatic] synonym: "apparatus respiratorius lymph vessel" EXACT [OBOL:automatic] synonym: "apparatus respiratorius lymphatic vessel" EXACT [OBOL:automatic] synonym: "lymph vessel of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "lymph vessel of respiratory system" EXACT [OBOL:automatic] synonym: "lymphatic vessel of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "lymphatic vessel of respiratory system" EXACT [OBOL:automatic] synonym: "respiratory system lymph vessel" EXACT [OBOL:automatic] xref: MA:0001824 is_a: UBERON:0001473 ! implied link automatically realized ! lymphatic vessel relationship: part_of UBERON:0001004 intersection_of: UBERON:0001473 ! lymphatic vessel intersection_of: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0003457 name: head bone def: "A bone that is part of a head [Obol]." [OBOL:automatic] synonym: "adult head bone" EXACT [OBOL:automatic] synonym: "adult head bone organ" EXACT [OBOL:automatic] synonym: "bone of adult head" EXACT [OBOL:automatic] synonym: "bone of head" EXACT [OBOL:automatic] synonym: "bone organ of adult head" EXACT [OBOL:automatic] synonym: "bone organ of head" EXACT [OBOL:automatic] synonym: "head bone organ" EXACT [OBOL:automatic] xref: MA:0000576 xref: SCTID:118646007 is_a: UBERON:0001474 ! implied link automatically realized ! bone relationship: part_of UBERON:0000033 intersection_of: UBERON:0001474 ! bone intersection_of: part_of UBERON:0000033 ! head [Term] id: UBERON:0003458 name: neck bone def: "A bone that is part of a neck [Obol]." [OBOL:automatic] synonym: "bone of neck" EXACT [OBOL:automatic] synonym: "bone of neck (volume)" EXACT [OBOL:automatic] synonym: "bone organ of neck" EXACT [OBOL:automatic] synonym: "bone organ of neck (volume)" EXACT [OBOL:automatic] synonym: "neck (volume) bone" EXACT [OBOL:automatic] synonym: "neck (volume) bone organ" EXACT [OBOL:automatic] synonym: "neck bone organ" EXACT [OBOL:automatic] xref: MA:0000584 xref: OpenCyc:Mx4rvnpJSJwpEbGdrcN5Y29ycA is_a: UBERON:0001474 ! implied link automatically realized ! bone relationship: part_of UBERON:0000974 intersection_of: UBERON:0001474 ! bone intersection_of: part_of UBERON:0000974 ! neck [Term] id: UBERON:0003459 name: chest bone def: "A bone that is part of a chest [Obol]." [OBOL:automatic] synonym: "anterior thoracic region bone" EXACT [OBOL:automatic] synonym: "anterior thoracic region bone organ" EXACT [OBOL:automatic] synonym: "anterolateral part of thorax bone" EXACT [OBOL:automatic] synonym: "anterolateral part of thorax bone organ" EXACT [OBOL:automatic] synonym: "bone of anterior thoracic region" EXACT [OBOL:automatic] synonym: "bone of anterolateral part of thorax" EXACT [OBOL:automatic] synonym: "bone of chest" EXACT [OBOL:automatic] synonym: "bone of front of thorax" EXACT [OBOL:automatic] synonym: "bone organ of anterior thoracic region" EXACT [OBOL:automatic] synonym: "bone organ of anterolateral part of thorax" EXACT [OBOL:automatic] synonym: "bone organ of chest" EXACT [OBOL:automatic] synonym: "bone organ of front of thorax" EXACT [OBOL:automatic] synonym: "chest bone organ" EXACT [OBOL:automatic] synonym: "front of thorax bone" EXACT [OBOL:automatic] synonym: "front of thorax bone organ" EXACT [OBOL:automatic] xref: MA:0000547 is_a: UBERON:0003827 ! implied link automatically realized ! thoracic segment bone is_a: UBERON:0005175 ! implied link automatically realized ! chest organ relationship: part_of UBERON:0001443 intersection_of: UBERON:0001474 ! bone intersection_of: part_of UBERON:0001443 ! chest [Term] id: UBERON:0003460 name: arm bone def: "A bone that is part of an arm [Obol]." [OBOL:automatic] synonym: "arm bone organ" EXACT [OBOL:automatic] synonym: "bone of arm" EXACT [OBOL:automatic] synonym: "bone of brachial region" EXACT [OBOL:automatic] synonym: "bone of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "bone of upper extremity" EXACT [GAID:178] synonym: "bone organ of arm" EXACT [OBOL:automatic] synonym: "bone organ of brachial region" EXACT [OBOL:automatic] synonym: "bone organ of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "brachial region bone" EXACT [OBOL:automatic] synonym: "brachial region bone organ" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb bone" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb bone organ" EXACT [OBOL:automatic] xref: GAID:178 xref: MA:0000592 xref: MESH:A.02.835.232.087 xref: ncithesaurus:Bone_of_the_Upper_Extremity xref: OpenCyc:Mx4rwKTXoJwpEbGdrcN5Y29ycA xref: SCTID:368532003 is_a: UBERON:0008962 ! implied link automatically realized ! forelimb bone relationship: part_of UBERON:0001460 intersection_of: UBERON:0001474 ! bone intersection_of: part_of UBERON:0001460 ! arm relationship: part_of UBERON:0001440 ! forelimb skeleton [Term] id: UBERON:0003461 name: shoulder bone def: "A bone that is part of a shoulder [Obol]." [OBOL:automatic] synonym: "bone of shoulder" EXACT [OBOL:automatic] synonym: "bone organ of shoulder" EXACT [OBOL:automatic] synonym: "shoulder bone organ" EXACT [OBOL:automatic] xref: MA:0000631 is_a: UBERON:0007829 ! implied link automatically realized ! pectoral girdle bone is_a: UBERON:0008962 ! implied link automatically realized ! forelimb bone relationship: part_of UBERON:0001467 intersection_of: UBERON:0001474 ! bone intersection_of: part_of UBERON:0001467 ! shoulder relationship: part_of UBERON:0001440 ! forelimb skeleton [Term] id: UBERON:0003462 name: viscerocranium bone def: "A bone that is part of a viscerocranium [Obol]." [OBOL:automatic] synonym: "bone of facial skeleton" EXACT [OBOL:automatic] synonym: "bone of viscerocranium" EXACT [OBOL:automatic] synonym: "facial bone" EXACT [EMAPA:19019] synonym: "facial skeleton bone" EXACT [OBOL:automatic] xref: EMAPA:19019 xref: MA:0001482 xref: ncithesaurus:Facial_Bone is_a: UBERON:0003457 ! implied link automatically realized ! head bone is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001704 intersection_of: UBERON:0001474 ! bone intersection_of: part_of UBERON:0001704 ! viscerocranium [Term] id: UBERON:0003463 name: trunk bone def: "A bone that is part of a trunk [Obol]." [OBOL:automatic] synonym: "bone of torso" EXACT [OBOL:automatic] synonym: "bone of trunk" EXACT [OBOL:automatic] synonym: "bone organ of torso" EXACT [OBOL:automatic] synonym: "bone organ of trunk" EXACT [OBOL:automatic] synonym: "torso bone" EXACT [OBOL:automatic] synonym: "torso bone organ" EXACT [OBOL:automatic] synonym: "trunk bone organ" EXACT [OBOL:automatic] xref: MA:0000512 xref: SCTID:427358002 is_a: UBERON:0001474 ! implied link automatically realized ! bone is_a: UBERON:0005177 ! implied link automatically realized ! trunk organ relationship: part_of UBERON:0002100 intersection_of: UBERON:0001474 ! bone intersection_of: part_of UBERON:0002100 ! trunk [Term] id: UBERON:0003464 name: hindlimb bone def: "A bone that is part of a hindlimb [Obol]." [OBOL:automatic] synonym: "bone of hind limb" EXACT [OBOL:automatic] synonym: "bone of hindlimb" EXACT [OBOL:automatic] synonym: "bone of inferior member" EXACT [OBOL:automatic] synonym: "bone of lower extremity" EXACT [OBOL:automatic] synonym: "bone organ of hind limb" EXACT [OBOL:automatic] synonym: "bone organ of hindlimb" EXACT [OBOL:automatic] synonym: "bone organ of inferior member" EXACT [OBOL:automatic] synonym: "bone organ of lower extremity" EXACT [OBOL:automatic] synonym: "hind limb bone" EXACT [OBOL:automatic] synonym: "hind limb bone organ" EXACT [OBOL:automatic] synonym: "hindlimb bone organ" EXACT [OBOL:automatic] synonym: "inferior member bone" EXACT [OBOL:automatic] synonym: "inferior member bone organ" EXACT [OBOL:automatic] synonym: "lower extremity bone" EXACT [OBOL:automatic] synonym: "lower extremity bone organ" EXACT [OBOL:automatic] xref: EFO:0003842 xref: GAID:198 xref: MA:0000660 xref: ncithesaurus:Bone_of_the_Lower_Extremity xref: SCTID:361370006 is_a: UBERON:0002428 ! implied link automatically realized ! limb bone relationship: part_of UBERON:0002103 intersection_of: UBERON:0001474 ! bone intersection_of: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0003465 name: chondrocranium bone alt_id: UBERON:0004762 def: "A bone that is part of a chondrocranium [Obol]." [OBOL:automatic] comment: ZFA:0001544 class made obsolete. subset: vertebrate_core synonym: "bone of chondrocranium" EXACT [OBOL:automatic] synonym: "bone organ of chondrocranium" EXACT [OBOL:automatic] synonym: "chondrocranium bone organ" EXACT [OBOL:automatic] synonym: "endochondral neurocranium bone" EXACT [OBOL:automatic, UBERON:cjm] xref: MA:0001478 is_a: UBERON:0004766 ! implied link automatically realized ! cranial bone relationship: part_of UBERON:0002241 intersection_of: UBERON:0001474 ! bone intersection_of: part_of UBERON:0002241 ! chondrocranium [Term] id: UBERON:0003466 name: lower arm bone def: "A bone that is part of a lower arm [Obol]." [OBOL:automatic] synonym: "antebrachial region bone" EXACT [OBOL:automatic] synonym: "antebrachial region bone organ" EXACT [OBOL:automatic] synonym: "arm middle limb segment bone" EXACT [OBOL:automatic] synonym: "arm middle limb segment bone organ" EXACT [OBOL:automatic] synonym: "arm zeugopod bone" EXACT [OBOL:automatic] synonym: "arm zeugopod bone organ" EXACT [OBOL:automatic] synonym: "bone of antebrachial region" EXACT [OBOL:automatic] synonym: "bone of arm middle limb segment" EXACT [OBOL:automatic] synonym: "bone of arm zeugopod" EXACT [OBOL:automatic] synonym: "bone of brachial region middle limb segment" EXACT [OBOL:automatic] synonym: "bone of brachial region zeugopod" EXACT [OBOL:automatic] synonym: "bone of intermediate segment of free upper limb" EXACT [OBOL:automatic] synonym: "bone of lower arm" EXACT [OBOL:automatic] synonym: "bone of lower segment of arm" EXACT [OBOL:automatic] synonym: "bone of middle limb segment of arm" EXACT [OBOL:automatic] synonym: "bone of middle limb segment of brachial region" EXACT [OBOL:automatic] synonym: "bone of middle limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "bone of proximal segment of free upper limb middle limb segment" EXACT [OBOL:automatic] synonym: "bone of proximal segment of free upper limb zeugopod" EXACT [OBOL:automatic] synonym: "bone of zeugopod of arm" EXACT [OBOL:automatic] synonym: "bone of zeugopod of brachial region" EXACT [OBOL:automatic] synonym: "bone of zeugopod of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "bone organ of antebrachial region" EXACT [OBOL:automatic] synonym: "bone organ of arm middle limb segment" EXACT [OBOL:automatic] synonym: "bone organ of arm zeugopod" EXACT [OBOL:automatic] synonym: "bone organ of brachial region middle limb segment" EXACT [OBOL:automatic] synonym: "bone organ of brachial region zeugopod" EXACT [OBOL:automatic] synonym: "bone organ of intermediate segment of free upper limb" EXACT [OBOL:automatic] synonym: "bone organ of lower arm" EXACT [OBOL:automatic] synonym: "bone organ of lower segment of arm" EXACT [OBOL:automatic] synonym: "bone organ of middle limb segment of arm" EXACT [OBOL:automatic] synonym: "bone organ of middle limb segment of brachial region" EXACT [OBOL:automatic] synonym: "bone organ of middle limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "bone organ of proximal segment of free upper limb middle limb segment" EXACT [OBOL:automatic] synonym: "bone organ of proximal segment of free upper limb zeugopod" EXACT [OBOL:automatic] synonym: "bone organ of zeugopod of arm" EXACT [OBOL:automatic] synonym: "bone organ of zeugopod of brachial region" EXACT [OBOL:automatic] synonym: "bone organ of zeugopod of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "brachial region middle limb segment bone" EXACT [OBOL:automatic] synonym: "brachial region middle limb segment bone organ" EXACT [OBOL:automatic] synonym: "brachial region zeugopod bone" EXACT [OBOL:automatic] synonym: "brachial region zeugopod bone organ" EXACT [OBOL:automatic] synonym: "intermediate segment of free upper limb bone" EXACT [OBOL:automatic] synonym: "intermediate segment of free upper limb bone organ" EXACT [OBOL:automatic] synonym: "lower arm bone organ" EXACT [OBOL:automatic] synonym: "lower segment of arm bone" EXACT [OBOL:automatic] synonym: "lower segment of arm bone organ" EXACT [OBOL:automatic] synonym: "middle limb segment of arm bone" EXACT [OBOL:automatic] synonym: "middle limb segment of arm bone organ" EXACT [OBOL:automatic] synonym: "middle limb segment of brachial region bone" EXACT [OBOL:automatic] synonym: "middle limb segment of brachial region bone organ" EXACT [OBOL:automatic] synonym: "middle limb segment of proximal segment of free upper limb bone" EXACT [OBOL:automatic] synonym: "middle limb segment of proximal segment of free upper limb bone organ" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb middle limb segment bone" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb middle limb segment bone organ" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb zeugopod bone" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb zeugopod bone organ" EXACT [OBOL:automatic] synonym: "zeugopod of arm bone" EXACT [OBOL:automatic] synonym: "zeugopod of arm bone organ" EXACT [OBOL:automatic] synonym: "zeugopod of brachial region bone" EXACT [OBOL:automatic] synonym: "zeugopod of brachial region bone organ" EXACT [OBOL:automatic] synonym: "zeugopod of proximal segment of free upper limb bone" EXACT [OBOL:automatic] synonym: "zeugopod of proximal segment of free upper limb bone organ" EXACT [OBOL:automatic] xref: MA:0000598 is_a: UBERON:0003460 ! implied link automatically realized ! arm bone relationship: part_of UBERON:0002386 intersection_of: UBERON:0001474 ! bone intersection_of: part_of UBERON:0002386 ! forelimb zeugopod [Term] id: UBERON:0003467 name: sesamoid bone of gastrocnemius def: "the small sesamoid bones situated behind the condyles of the femur." [MP:0009005] synonym: "fabella" RELATED [MA:0001378] synonym: "gastrocnemius sesamoid bone" EXACT [OBOL:automatic] synonym: "m. gastrocnemius sesamoid bone" EXACT [OBOL:automatic] synonym: "sesamoid bone of m. gastrocnemius" EXACT [OBOL:automatic] xref: galen:Fabella xref: MA:0001378 is_a: UBERON:0001479 ! implied link automatically realized ! sesamoid bone is_a: UBERON:0004251 ! implied link automatically realized ! lower leg bone relationship: part_of UBERON:0001388 intersection_of: UBERON:0001479 ! sesamoid bone intersection_of: part_of UBERON:0001388 ! gastrocnemius [Term] id: UBERON:0003468 name: ureteric artery def: "An artery that is part of a ureter [Obol]." [OBOL:automatic] xref: MA:0002074 is_a: UBERON:0001637 ! implied link automatically realized ! artery is_a: UBERON:0003520 ! implied link automatically realized ! pelvis blood vessel is_a: UBERON:0006555 ! implied link automatically realized ! excretory tube relationship: part_of UBERON:0000056 intersection_of: UBERON:0001637 ! artery intersection_of: part_of UBERON:0000056 ! ureter [Term] id: UBERON:0003469 name: respiratory system artery def: "An artery that is part of a respiratory system [Obol]." [OBOL:automatic] xref: MA:0001804 is_a: UBERON:0001637 ! implied link automatically realized ! artery is_a: UBERON:0003643 ! implied link automatically realized ! respiratory system arterial blood vessel relationship: part_of UBERON:0001004 intersection_of: UBERON:0001637 ! artery intersection_of: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0003470 name: artery of upper lip def: "An artery that is part of a upper lip [Obol]." [OBOL:automatic] xref: MA:0001917 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0001637 ! implied link automatically realized ! artery is_a: UBERON:0003496 ! implied link automatically realized ! head blood vessel is_a: UBERON:0006913 ! implied link automatically realized ! lip epithelium relationship: part_of UBERON:0001834 intersection_of: UBERON:0001637 ! artery intersection_of: part_of UBERON:0001834 ! upper lip [Term] id: UBERON:0003471 name: artery of lower lip def: "An artery that is part of a lower lip [Obol]." [OBOL:automatic] xref: MA:0001916 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0001637 ! implied link automatically realized ! artery is_a: UBERON:0003496 ! implied link automatically realized ! head blood vessel is_a: UBERON:0006913 ! implied link automatically realized ! lip epithelium relationship: part_of UBERON:0001835 intersection_of: UBERON:0001637 ! artery intersection_of: part_of UBERON:0001835 ! lower lip [Term] id: UBERON:0003472 name: cerebellar artery def: "An artery that is part of a cerebellum [Obol]." [OBOL:automatic] xref: EHDAA:5290 xref: EHDAA2:0000228 xref: MA:0001933 xref: ncithesaurus:Cerebellar_Artery xref: SCTID:278102002 is_a: UBERON:0001637 ! implied link automatically realized ! artery is_a: UBERON:0002946 ! implied link automatically realized ! regional part of cerebellum is_a: UBERON:0003499 ! implied link automatically realized ! brain blood vessel relationship: part_of UBERON:0002037 intersection_of: UBERON:0001637 ! artery intersection_of: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0003473 name: thoracic cavity artery def: "An artery that is part of a thoracic cavity[cjm]." [https://sourceforge.net/tracker/index.php?func=detail&aid=3317815&group_id=76834&atid=1205376] comment: Note that in MA, aorta is classified here - but this is problematic because the abdominal aorta is not in the thoracic cavity xref: MA:0001902 is_a: UBERON:0001637 ! implied link automatically realized ! artery is_a: UBERON:0003519 ! implied link automatically realized ! thoracic cavity blood vessel relationship: part_of UBERON:0002224 intersection_of: UBERON:0001637 ! artery intersection_of: part_of UBERON:0002224 ! thoracic cavity [Term] id: UBERON:0003474 name: meningeal artery def: "An artery that is part of a meninx [Obol]." [OBOL:automatic] xref: GAID:499 xref: MA:0002001 xref: MESH:A.07.231.114.545 is_a: UBERON:0001637 ! implied link automatically realized ! artery is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0002360 intersection_of: UBERON:0001637 ! artery intersection_of: part_of UBERON:0002360 ! meninx [Term] id: UBERON:0003475 name: ureteric vein def: "A vein that is part of a ureter [Obol]." [OBOL:automatic] synonym: "ureter vein" EXACT [OBOL:automatic] synonym: "vein of ureter" EXACT [OBOL:automatic] xref: MA:0002250 is_a: UBERON:0001638 ! implied link automatically realized ! vein is_a: UBERON:0003520 ! implied link automatically realized ! pelvis blood vessel is_a: UBERON:0006555 ! implied link automatically realized ! excretory tube relationship: part_of UBERON:0000056 intersection_of: UBERON:0001638 ! vein intersection_of: part_of UBERON:0000056 ! ureter [Term] id: UBERON:0003476 name: respiratory system venous blood vessel def: "A vein that is part of a respiratory system [Obol]." [OBOL:automatic] synonym: "apparatus respiratorius vein" EXACT [OBOL:automatic] synonym: "respiratory system vein" EXACT [OBOL:automatic] synonym: "vein of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "vein of respiratory system" EXACT [OBOL:automatic] xref: MA:0001809 xref: MA:0001810 is_a: UBERON:0001638 ! implied link automatically realized ! vein is_a: UBERON:0003504 ! implied link automatically realized ! respiratory system blood vessel relationship: part_of UBERON:0001004 intersection_of: UBERON:0001638 ! vein intersection_of: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0003477 name: vein of upper lip def: "A vein that is part of a upper lip [Obol]." [OBOL:automatic] synonym: "upper lip vein" EXACT [OBOL:automatic] xref: MA:0002255 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0001638 ! implied link automatically realized ! vein is_a: UBERON:0003496 ! implied link automatically realized ! head blood vessel is_a: UBERON:0006913 ! implied link automatically realized ! lip epithelium relationship: part_of UBERON:0001834 intersection_of: UBERON:0001638 ! vein intersection_of: part_of UBERON:0001834 ! upper lip [Term] id: UBERON:0003478 name: vein of lower lip def: "A vein that is part of a lower lip [Obol]." [OBOL:automatic] synonym: "lower lip vein" EXACT [OBOL:automatic] xref: MA:0002253 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0001638 ! implied link automatically realized ! vein is_a: UBERON:0003496 ! implied link automatically realized ! head blood vessel is_a: UBERON:0006913 ! implied link automatically realized ! lip epithelium relationship: part_of UBERON:0001835 intersection_of: UBERON:0001638 ! vein intersection_of: part_of UBERON:0001835 ! lower lip [Term] id: UBERON:0003479 name: thoracic cavity vein def: "A vein that is part of a thoracic cavity [Obol]." [OBOL:automatic] synonym: "cavity of chest vein" EXACT [OBOL:automatic] synonym: "cavity of thorax vein" EXACT [OBOL:automatic] synonym: "chest cavity vein" EXACT [OBOL:automatic] synonym: "pectoral cavity vein" EXACT [OBOL:automatic] synonym: "vein of cavity of chest" EXACT [OBOL:automatic] synonym: "vein of cavity of thorax" EXACT [OBOL:automatic] synonym: "vein of chest cavity" EXACT [OBOL:automatic] synonym: "vein of pectoral cavity" EXACT [OBOL:automatic] synonym: "vein of thoracic cavity" EXACT [OBOL:automatic] xref: MA:0001903 is_a: UBERON:0003519 ! implied link automatically realized ! thoracic cavity blood vessel is_a: UBERON:0005194 ! implied link automatically realized ! thoracic vein relationship: part_of UBERON:0002224 intersection_of: UBERON:0001638 ! vein intersection_of: part_of UBERON:0002224 ! thoracic cavity [Term] id: UBERON:0003480 name: vein of clitoris def: "A vein that is part of a clitoris [Obol]." [OBOL:automatic] synonym: "clitoris vein" EXACT [OBOL:automatic] xref: MA:0002252 xref: SCTID:360819004 is_a: UBERON:0001638 ! implied link automatically realized ! vein is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0002411 intersection_of: UBERON:0001638 ! vein intersection_of: part_of UBERON:0002411 ! clitoris [Term] id: UBERON:0003481 name: tail vein def: "A vein that is part of a tail [Obol]." [OBOL:automatic] synonym: "post-vent region vein" EXACT [OBOL:automatic] synonym: "vein of post-vent region" EXACT [OBOL:automatic] synonym: "vein of tail" EXACT [OBOL:automatic] xref: AAO:0011105 xref: MA:0002233 xref: XAO:0000393 is_a: UBERON:0001638 ! implied link automatically realized ! vein is_a: UBERON:0003524 ! implied link automatically realized ! tail blood vessel relationship: part_of UBERON:0007812 intersection_of: UBERON:0001638 ! vein intersection_of: part_of UBERON:0007812 ! post-anal tail [Term] id: UBERON:0003482 name: vein of trabecular bone def: "A portion of vein that is part of a trabecular bone tissue [Obol]." [OBOL:automatic] synonym: "spongy bone vein" EXACT [OBOL:automatic] synonym: "trabecular bone tissue vein" EXACT [OBOL:automatic] synonym: "trabecular bone vein" EXACT [OBOL:automatic] synonym: "vein of spongy bone" EXACT [OBOL:automatic] synonym: "vein of trabecular bone tissue" EXACT [OBOL:automatic] xref: MA:0002254 is_a: UBERON:0001638 ! implied link automatically realized ! vein relationship: part_of UBERON:0002483 intersection_of: UBERON:0001638 ! vein intersection_of: part_of UBERON:0002483 ! trabecular bone tissue [Term] id: UBERON:0003483 name: thymus lymphoid tissue def: "A portion of lymphoid tissue that is part of a thymus [Obol]." [OBOL:automatic] synonym: "lymphatic tissue of thymus" EXACT [OBOL:automatic] synonym: "lymphatic tissue of thymus gland" EXACT [OBOL:automatic] synonym: "lymphocytic tissue of thymus" EXACT [OBOL:automatic] synonym: "lymphocytic tissue of thymus gland" EXACT [OBOL:automatic] synonym: "lymphoid tissue of thymus" EXACT [OBOL:automatic] synonym: "lymphoid tissue of thymus gland" EXACT [OBOL:automatic] synonym: "thymic lymphocytic tissue" EXACT [OBOL:automatic] synonym: "thymus gland lymphatic tissue" EXACT [OBOL:automatic] synonym: "thymus gland lymphocytic tissue" EXACT [OBOL:automatic] synonym: "thymus gland lymphoid tissue" EXACT [OBOL:automatic] synonym: "thymus lymphatic tissue" EXACT [OBOL:automatic] synonym: "thymus lymphocytic tissue" EXACT [OBOL:automatic] xref: MA:0002673 xref: MESH:A.06.407.850 xref: ncithesaurus:Thymic_Lymphoid_Tissue is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0001744 ! implied link automatically realized ! lymphoid tissue relationship: part_of UBERON:0002370 intersection_of: UBERON:0001744 ! lymphoid tissue intersection_of: part_of UBERON:0002370 ! thymus [Term] id: UBERON:0003484 name: eye sebaceous gland def: "A sebaceous gland that is part of a camera-type eye [Obol]." [OBOL:automatic] subset: organ_slim synonym: "camera-type eye sebaceous gland" EXACT [OBOL:automatic] synonym: "sebaceous gland of camera-type eye" EXACT [OBOL:automatic] synonym: "sebaceous gland of vertebrate eye" EXACT [OBOL:automatic] synonym: "vertebrate eye sebaceous gland" EXACT [OBOL:automatic] xref: MA:0002452 is_a: UBERON:0001821 ! implied link automatically realized ! sebaceous gland is_a: UBERON:0004859 ! implied link automatically realized ! eye gland relationship: part_of UBERON:0000019 intersection_of: UBERON:0001821 ! sebaceous gland intersection_of: part_of UBERON:0000019 ! camera-type eye [Term] id: UBERON:0003485 name: vagina sebaceous gland def: "A sebaceous gland that is part of a vagina [Obol]." [OBOL:automatic] subset: organ_slim synonym: "sebaceous gland of vagina" EXACT [OBOL:automatic] xref: MA:0001732 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001821 ! implied link automatically realized ! sebaceous gland is_a: UBERON:0005398 ! implied link automatically realized ! female reproductive gland relationship: part_of UBERON:0000996 intersection_of: UBERON:0001821 ! sebaceous gland intersection_of: part_of UBERON:0000996 ! vagina [Term] id: UBERON:0003486 name: mammary gland sebaceous gland def: "A sebaceous gland that is part of a lactiferous gland [Obol]." [OBOL:automatic] subset: organ_slim synonym: "lactiferous gland sebaceous gland" EXACT [OBOL:automatic] synonym: "lobe of breast sebaceous gland" EXACT [OBOL:automatic] synonym: "lobe of mammary gland sebaceous gland" EXACT [OBOL:automatic] synonym: "sebaceous gland of lactiferous gland" EXACT [OBOL:automatic] synonym: "sebaceous gland of lobe of breast" EXACT [OBOL:automatic] synonym: "sebaceous gland of lobe of mammary gland" EXACT [OBOL:automatic] synonym: "sebaceous gland of mammary gland" EXACT [OBOL:automatic] xref: MA:0000794 is_a: UBERON:0001821 ! implied link automatically realized ! sebaceous gland is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001911 intersection_of: UBERON:0001821 ! sebaceous gland intersection_of: part_of UBERON:0001911 ! mammary gland [Term] id: UBERON:0003487 name: skin sebaceous gland def: "the holocrine glands of the dermis that secrete sebum into the hair follicles." [MP:0009535] subset: organ_slim synonym: "sebaceous gland of skin" EXACT [OBOL:automatic] xref: MA:0000149 xref: MESH:A.10.336.827 is_a: UBERON:0001821 ! implied link automatically realized ! sebaceous gland is_a: UBERON:0002419 ! implied link automatically realized ! skin gland relationship: part_of UBERON:0002097 intersection_of: UBERON:0001821 ! sebaceous gland intersection_of: part_of UBERON:0002097 ! skin of body [Term] id: UBERON:0003488 name: abdominal mammary gland def: "A lactiferous gland that is part of an abdomen [Obol]." [OBOL:automatic] synonym: "abdomen lactiferous gland" EXACT [OBOL:automatic] synonym: "abdomen lobe of breast" EXACT [OBOL:automatic] synonym: "abdomen lobe of mammary gland" EXACT [OBOL:automatic] synonym: "abdomen mammary gland" EXACT [OBOL:automatic] synonym: "lactiferous gland of abdomen" EXACT [OBOL:automatic] synonym: "lobe of breast of abdomen" EXACT [OBOL:automatic] synonym: "lobe of mammary gland of abdomen" EXACT [OBOL:automatic] synonym: "mammary gland of abdomen" EXACT [OBOL:automatic] xref: MA:0000787 is_a: UBERON:0001911 ! implied link automatically realized ! mammary gland is_a: UBERON:0005172 ! implied link automatically realized ! abdomen organ relationship: part_of UBERON:0000916 intersection_of: UBERON:0001911 ! mammary gland intersection_of: part_of UBERON:0000916 ! abdomen [Term] id: UBERON:0003489 name: respiratory system capillary endothelium def: "An endothelium of capillary that is part of a respiratory system [Obol]." [OBOL:automatic] synonym: "apparatus respiratorius blood capillary endothelium" EXACT [OBOL:automatic] synonym: "apparatus respiratorius capillary endothelium" EXACT [OBOL:automatic] synonym: "apparatus respiratorius capillary vessel endothelium" EXACT [OBOL:automatic] synonym: "apparatus respiratorius endothelium of blood capillary" EXACT [OBOL:automatic] synonym: "apparatus respiratorius endothelium of capillary" EXACT [OBOL:automatic] synonym: "apparatus respiratorius endothelium of capillary vessel" EXACT [OBOL:automatic] synonym: "blood capillary endothelium of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "blood capillary endothelium of respiratory system" EXACT [OBOL:automatic] synonym: "capillary endothelium of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "capillary endothelium of respiratory system" EXACT [OBOL:automatic] synonym: "capillary vessel endothelium of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "capillary vessel endothelium of respiratory system" EXACT [OBOL:automatic] synonym: "endothelium of blood capillary of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "endothelium of blood capillary of respiratory system" EXACT [OBOL:automatic] synonym: "endothelium of capillary of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "endothelium of capillary of respiratory system" EXACT [OBOL:automatic] synonym: "endothelium of capillary vessel of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "endothelium of capillary vessel of respiratory system" EXACT [OBOL:automatic] synonym: "respiratory system blood capillary endothelium" EXACT [OBOL:automatic] synonym: "respiratory system capillary vessel endothelium" EXACT [OBOL:automatic] synonym: "respiratory system endothelium of blood capillary" EXACT [OBOL:automatic] synonym: "respiratory system endothelium of capillary" EXACT [OBOL:automatic] synonym: "respiratory system endothelium of capillary vessel" EXACT [OBOL:automatic] xref: MA:0001808 is_a: UBERON:0001915 ! implied link automatically realized ! endothelium of capillary is_a: UBERON:0004702 ! implied link automatically realized ! respiratory system blood vessel endothelium relationship: part_of UBERON:0001004 intersection_of: UBERON:0001915 ! endothelium of capillary intersection_of: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0003490 name: respiratory system reticular lamina def: "A reticular lamina that is part of a respiratory system [Obol]." [OBOL:automatic] synonym: "apparatus respiratorius fibroreticular lamina" EXACT [OBOL:automatic] synonym: "apparatus respiratorius lamina fibroreticularis" EXACT [OBOL:automatic] synonym: "apparatus respiratorius reticular lamina" EXACT [OBOL:automatic] synonym: "fibroreticular lamina of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "fibroreticular lamina of respiratory system" EXACT [OBOL:automatic] synonym: "lamina fibroreticularis of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "lamina fibroreticularis of respiratory system" EXACT [OBOL:automatic] synonym: "respiratory system fibroreticular lamina" EXACT [OBOL:automatic] synonym: "respiratory system lamina fibroreticularis" EXACT [OBOL:automatic] synonym: "reticular lamina of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "reticular lamina of respiratory system" EXACT [OBOL:automatic] xref: MA:0001817 is_a: UBERON:0001967 ! implied link automatically realized ! reticular lamina relationship: part_of UBERON:0001004 intersection_of: UBERON:0001967 ! reticular lamina intersection_of: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0003492 name: bronchus reticular lamina def: "A reticular lamina that is part of a bronchus [Obol]." [OBOL:automatic] synonym: "bronchi fibroreticular lamina" EXACT [OBOL:automatic] synonym: "bronchi lamina fibroreticularis" EXACT [OBOL:automatic] synonym: "bronchi reticular lamina" EXACT [OBOL:automatic] synonym: "bronchial trunk fibroreticular lamina" EXACT [OBOL:automatic] synonym: "bronchial trunk lamina fibroreticularis" EXACT [OBOL:automatic] synonym: "bronchial trunk reticular lamina" EXACT [OBOL:automatic] synonym: "bronchus fibroreticular lamina" EXACT [OBOL:automatic] synonym: "bronchus lamina fibroreticularis" EXACT [OBOL:automatic] synonym: "fibroreticular lamina of bronchi" EXACT [OBOL:automatic] synonym: "fibroreticular lamina of bronchial trunk" EXACT [OBOL:automatic] synonym: "fibroreticular lamina of bronchus" EXACT [OBOL:automatic] synonym: "lamina fibroreticularis of bronchi" EXACT [OBOL:automatic] synonym: "lamina fibroreticularis of bronchial trunk" EXACT [OBOL:automatic] synonym: "lamina fibroreticularis of bronchus" EXACT [OBOL:automatic] synonym: "reticular lamina of bronchi" EXACT [OBOL:automatic] synonym: "reticular lamina of bronchial trunk" EXACT [OBOL:automatic] synonym: "reticular lamina of bronchus" EXACT [OBOL:automatic] xref: MA:0001834 is_a: UBERON:0003490 ! implied link automatically realized ! respiratory system reticular lamina is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: part_of UBERON:0002185 intersection_of: UBERON:0001967 ! reticular lamina intersection_of: part_of UBERON:0002185 ! bronchus [Term] id: UBERON:0003493 name: trachea reticular lamina def: "A reticular lamina that is part of a trachea [Obol]." [OBOL:automatic] synonym: "fibroreticular lamina of cartilaginous trachea" EXACT [OBOL:automatic] synonym: "fibroreticular lamina of windpipe" EXACT [OBOL:automatic] synonym: "lamina fibroreticularis of cartilaginous trachea" EXACT [OBOL:automatic] synonym: "lamina fibroreticularis of windpipe" EXACT [OBOL:automatic] synonym: "reticular lamina of cartilaginous trachea" EXACT [OBOL:automatic] synonym: "reticular lamina of windpipe" EXACT [OBOL:automatic] synonym: "windpipe fibroreticular lamina" EXACT [OBOL:automatic] synonym: "windpipe lamina fibroreticularis" EXACT [OBOL:automatic] synonym: "windpipe reticular lamina" EXACT [OBOL:automatic] xref: MA:0001856 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003490 ! implied link automatically realized ! respiratory system reticular lamina relationship: part_of UBERON:0003126 intersection_of: UBERON:0001967 ! reticular lamina intersection_of: part_of UBERON:0003126 ! trachea [Term] id: UBERON:0003494 name: respiratory system venule def: "A venule that is part of a respiratory system [Obol]." [OBOL:automatic] synonym: "apparatus respiratorius venule" EXACT [OBOL:automatic] synonym: "venule of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "venule of respiratory system" EXACT [OBOL:automatic] xref: MA:0001813 is_a: UBERON:0001979 ! implied link automatically realized ! venule is_a: UBERON:0003504 ! implied link automatically realized ! respiratory system blood vessel relationship: part_of UBERON:0001004 intersection_of: UBERON:0001979 ! venule intersection_of: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0003495 name: respiratory system arteriole def: "An arteriole that is part of a respiratory system [Obol]." [OBOL:automatic] xref: MA:0001803 is_a: UBERON:0001980 ! implied link automatically realized ! arteriole is_a: UBERON:0003643 ! implied link automatically realized ! respiratory system arterial blood vessel relationship: part_of UBERON:0001004 intersection_of: UBERON:0001980 ! arteriole intersection_of: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0003496 name: head blood vessel def: "A blood vessel that is part of a head [Obol]." [OBOL:automatic] synonym: "adult head blood vessel" EXACT [OBOL:automatic] synonym: "blood vessel of adult head" EXACT [OBOL:automatic] synonym: "blood vessel of head" EXACT [OBOL:automatic] xref: MA:0000575 xref: SCTID:127865000 is_a: UBERON:0001981 ! implied link automatically realized ! blood vessel relationship: part_of UBERON:0000033 intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0000033 ! head [Term] id: UBERON:0003497 name: abdomen blood vessel def: "A blood vessel that is part of an abdomen [Obol]." [OBOL:automatic] synonym: "blood vessel of abdomen" EXACT [OBOL:automatic] xref: MA:0000518 is_a: UBERON:0003835 ! implied link automatically realized ! abdominal segment blood vessel relationship: part_of UBERON:0000916 intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0000916 ! abdomen [Term] id: UBERON:0003498 name: heart blood vessel def: "A blood vessel that is part of a heart [Obol]." [OBOL:automatic] synonym: "blood vessel of heart" EXACT [OBOL:automatic] xref: MA:0002483 is_a: UBERON:0001981 ! implied link automatically realized ! blood vessel is_a: UBERON:0005985 ! implied link automatically realized ! coronary vessel relationship: part_of UBERON:0000948 intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0000948 ! heart [Term] id: UBERON:0003499 name: brain blood vessel def: "A blood vessel that is part of a brain [Obol]." [OBOL:automatic] synonym: "blood vessel of brain" EXACT [OBOL:automatic] xref: MA:0002769 is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain is_a: UBERON:0003496 ! implied link automatically realized ! head blood vessel relationship: part_of UBERON:0000955 intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0000955 ! brain [Term] id: UBERON:0003500 name: corneal blood vessel def: "A blood vessel that is part of a cornea [Obol]." [OBOL:automatic] synonym: "blood vessel of cornea" EXACT [OBOL:automatic] synonym: "cornea blood vessel" EXACT [OBOL:automatic] xref: MA:0001241 is_a: UBERON:0001772 ! implied link automatically realized ! corneal epithelium is_a: UBERON:0003496 ! implied link automatically realized ! head blood vessel relationship: part_of UBERON:0000964 intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0000964 ! cornea [Term] id: UBERON:0003501 name: retina blood vessel def: "A blood vessel that is part of a retina [Obol]." [OBOL:automatic] synonym: "blood vessel of inner layer of eyeball" EXACT [OBOL:automatic] synonym: "blood vessel of retina" EXACT [OBOL:automatic] synonym: "blood vessel of tunica interna of eyeball" EXACT [OBOL:automatic] synonym: "inner layer of eyeball blood vessel" EXACT [OBOL:automatic] synonym: "retinal blood vessel" EXACT [OBOL:automatic] synonym: "tunica interna of eyeball blood vessel" EXACT [OBOL:automatic] xref: GAID:509 xref: MA:0001317 xref: MESH:A.07.231.611 xref: SCTID:280692003 xref: XAO:0004153 is_a: UBERON:0003496 ! implied link automatically realized ! head blood vessel is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0007625 ! implied link automatically realized ! pigment epithelium of eye relationship: part_of UBERON:0000966 intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0000966 ! retina relationship: part_of UBERON:0004864 ! vasculature of retina [Term] id: UBERON:0003502 name: neck blood vessel def: "A blood vessel that is part of a neck [Obol]." [OBOL:automatic] synonym: "blood vessel of neck" EXACT [OBOL:automatic] synonym: "blood vessel of neck (volume)" EXACT [OBOL:automatic] synonym: "neck (volume) blood vessel" EXACT [OBOL:automatic] xref: MA:0000583 is_a: UBERON:0001981 ! implied link automatically realized ! blood vessel relationship: part_of UBERON:0000974 intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0000974 ! neck [Term] id: UBERON:0003503 name: leg blood vessel def: "A blood vessel that is part of a leg [Obol]." [OBOL:automatic] synonym: "blood vessel of leg" EXACT [OBOL:automatic] xref: MA:0000669 is_a: UBERON:0003516 ! implied link automatically realized ! hindlimb blood vessel relationship: part_of UBERON:0000978 intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0000978 ! leg [Term] id: UBERON:0003504 name: respiratory system blood vessel def: "A blood vessel that is part of a respiratory system [Obol]." [OBOL:automatic] synonym: "apparatus respiratorius blood vessel" EXACT [OBOL:automatic] synonym: "blood vessel of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "blood vessel of respiratory system" EXACT [OBOL:automatic] xref: MA:0001799 is_a: UBERON:0001981 ! implied link automatically realized ! blood vessel is_a: UBERON:0004807 ! implied link automatically realized ! respiratory system epithelium relationship: part_of UBERON:0001004 intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0003505 name: trachea blood vessel alt_id: UBERON:0003525 synonym: "blood vessel of trachea" EXACT [OBOL:automatic] xref: MA:0001852 is_a: UBERON:0000117 ! implied link automatically realized ! respiratory tube is_a: UBERON:0001901 ! implied link automatically realized ! epithelium of trachea is_a: UBERON:0003504 ! implied link automatically realized ! respiratory system blood vessel is_a: UBERON:0003519 ! implied link automatically realized ! thoracic cavity blood vessel relationship: part_of UBERON:0003126 intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0003126 ! trachea [Term] id: UBERON:0003506 name: chest blood vessel def: "A blood vessel that is part of a chest [Obol]." [OBOL:automatic] synonym: "anterior thoracic region blood vessel" EXACT [OBOL:automatic] synonym: "anterolateral part of thorax blood vessel" EXACT [OBOL:automatic] synonym: "blood vessel of anterior thoracic region" EXACT [OBOL:automatic] synonym: "blood vessel of anterolateral part of thorax" EXACT [OBOL:automatic] synonym: "blood vessel of chest" EXACT [OBOL:automatic] synonym: "blood vessel of front of thorax" EXACT [OBOL:automatic] synonym: "front of thorax blood vessel" EXACT [OBOL:automatic] xref: MA:0000549 is_a: UBERON:0003834 ! implied link automatically realized ! thoracic segment blood vessel relationship: part_of UBERON:0001443 intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0001443 ! chest [Term] id: UBERON:0003507 name: arm blood vessel def: "A blood vessel that is part of an arm [Obol]." [OBOL:automatic] synonym: "blood vessel of arm" EXACT [OBOL:automatic] synonym: "blood vessel of brachial region" EXACT [OBOL:automatic] synonym: "blood vessel of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "brachial region blood vessel" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb blood vessel" EXACT [OBOL:automatic] xref: MA:0000591 is_a: UBERON:0003515 ! implied link automatically realized ! forelimb blood vessel relationship: part_of UBERON:0001460 intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0001460 ! arm [Term] id: UBERON:0003508 name: foot digit blood vessel def: "A blood vessel that is part of a toe [Obol]." [OBOL:automatic] synonym: "blood vessel of digit of foot" EXACT [OBOL:automatic] synonym: "blood vessel of digit of terminal segment of free lower limb" EXACT [OBOL:automatic] synonym: "blood vessel of digitus pedis" EXACT [OBOL:automatic] synonym: "blood vessel of foot digit" EXACT [OBOL:automatic] synonym: "blood vessel of terminal segment of free lower limb digit" EXACT [OBOL:automatic] synonym: "blood vessel of toe" EXACT [OBOL:automatic] synonym: "digit of foot blood vessel" EXACT [OBOL:automatic] synonym: "digit of terminal segment of free lower limb blood vessel" EXACT [OBOL:automatic] synonym: "digitus pedis blood vessel" EXACT [OBOL:automatic] synonym: "terminal segment of free lower limb digit blood vessel" EXACT [OBOL:automatic] synonym: "toe blood vessel" EXACT [OBOL:automatic] xref: MA:0000645 is_a: UBERON:0003521 ! implied link automatically realized ! foot blood vessel is_a: UBERON:0005226 ! implied link automatically realized ! foot digit epithelium relationship: part_of UBERON:0001466 intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0001466 ! foot digit [Term] id: UBERON:0003509 name: arterial blood vessel def: "A blood vessel that is part of the arterial system. Includes artery, arteriole and aorta." [UBERON:cjm] comment: only in MA - supertype of artery, arteriole, aorta. xref: MA:0000061 is_a: UBERON:0001981 ! implied link automatically realized ! blood vessel relationship: part_of UBERON:0004572 intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0004572 ! arterial system [Term] id: UBERON:0003510 name: eyelid blood vessel def: "A blood vessel that is part of a eyelid [Obol]." [OBOL:automatic] synonym: "blepharon blood vessel" EXACT [OBOL:automatic] synonym: "blood vessel of blepharon" EXACT [OBOL:automatic] synonym: "blood vessel of eyelid" EXACT [OBOL:automatic] xref: MA:0001250 is_a: UBERON:0003496 ! implied link automatically realized ! head blood vessel relationship: part_of UBERON:0001711 intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0001711 ! eyelid [Term] id: UBERON:0003511 name: iris blood vessel def: "A blood vessel that is part of a iris [Obol]." [OBOL:automatic] subset: vertebrate_core synonym: "blood vessel of iris" EXACT [OBOL:automatic] xref: MA:0001290 xref: ZFA:0005568 is_a: UBERON:0002506 ! implied link automatically realized ! iris epithelium is_a: UBERON:0003496 ! implied link automatically realized ! head blood vessel relationship: part_of UBERON:0001769 intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0001769 ! iris relationship: part_of UBERON:0004118 ! vasculature of iris [Term] id: UBERON:0003512 name: lung blood vessel def: "A blood vessel that is part of a lung [Obol]." [OBOL:automatic] synonym: "blood vessel of lung" EXACT [OBOL:automatic] xref: MA:0002457 is_a: UBERON:0000115 ! implied link automatically realized ! lung epithelium is_a: UBERON:0003504 ! implied link automatically realized ! respiratory system blood vessel is_a: UBERON:0003519 ! implied link automatically realized ! thoracic cavity blood vessel relationship: part_of UBERON:0002048 intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0002048 ! lung [Term] id: UBERON:0003513 name: trunk blood vessel def: "A blood vessel that is part of a trunk [Obol]." [OBOL:automatic] synonym: "blood vessel of torso" EXACT [OBOL:automatic] synonym: "blood vessel of trunk" EXACT [OBOL:automatic] synonym: "torso blood vessel" EXACT [OBOL:automatic] xref: MA:0000511 is_a: UBERON:0001981 ! implied link automatically realized ! blood vessel relationship: part_of UBERON:0002100 intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0002100 ! trunk [Term] id: UBERON:0003514 name: limb blood vessel def: "A blood vessel that is part of a limb [Obol]." [OBOL:automatic] synonym: "blood vessel of limb" EXACT [OBOL:automatic] xref: MA:0000687 is_a: UBERON:0007301 ! implied link automatically realized ! limb/fin blood vessel relationship: part_of UBERON:0002101 intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0002101 ! limb [Term] id: UBERON:0003515 name: forelimb blood vessel def: "A blood vessel that is part of a forelimb [Obol]." [OBOL:automatic] synonym: "anteriormost limb blood vessel" EXACT [OBOL:automatic] synonym: "blood vessel of anteriormost limb" EXACT [OBOL:automatic] synonym: "blood vessel of fore limb" EXACT [OBOL:automatic] synonym: "blood vessel of forelimb" EXACT [OBOL:automatic] synonym: "blood vessel of superior member" EXACT [OBOL:automatic] synonym: "blood vessel of upper extremity" EXACT [OBOL:automatic] synonym: "fore limb blood vessel" EXACT [OBOL:automatic] synonym: "superior member blood vessel" EXACT [OBOL:automatic] synonym: "upper extremity blood vessel" EXACT [OBOL:automatic] xref: MA:0000611 is_a: UBERON:0003514 ! implied link automatically realized ! limb blood vessel is_a: UBERON:0007300 ! implied link automatically realized ! fore limb/fin blood vessel relationship: part_of UBERON:0002102 intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0002102 ! forelimb [Term] id: UBERON:0003516 name: hindlimb blood vessel def: "A blood vessel that is part of a hindlimb [Obol]." [OBOL:automatic] synonym: "blood vessel of hind limb" EXACT [OBOL:automatic] synonym: "blood vessel of hindlimb" EXACT [OBOL:automatic] synonym: "blood vessel of inferior member" EXACT [OBOL:automatic] synonym: "blood vessel of lower extremity" EXACT [OBOL:automatic] synonym: "hind limb blood vessel" EXACT [OBOL:automatic] synonym: "inferior member blood vessel" EXACT [OBOL:automatic] synonym: "lower extremity blood vessel" EXACT [OBOL:automatic] xref: MA:0000659 is_a: UBERON:0003514 ! implied link automatically realized ! limb blood vessel relationship: part_of UBERON:0002103 intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0003517 name: kidney blood vessel def: "A blood vessel that is part of a kidney [Obol]." [OBOL:automatic] subset: vertebrate_core synonym: "blood vessel of kidney" EXACT [OBOL:automatic] synonym: "renal blood vessel" EXACT [OBOL:automatic] xref: MA:0001682 xref: ZFA:0005306 is_a: UBERON:0003497 ! implied link automatically realized ! abdomen blood vessel is_a: UBERON:0004819 ! implied link automatically realized ! kidney epithelium is_a: UBERON:0006555 ! implied link automatically realized ! excretory tube relationship: part_of UBERON:0002113 intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0002113 ! kidney relationship: part_of UBERON:0006544 ! kidney vasculature [Term] id: UBERON:0003518 name: main bronchus blood vessel def: "A blood vessel that is part of a main bronchus [Obol]." [OBOL:automatic] synonym: "blood vessel of bronchus principalis" EXACT [OBOL:automatic] synonym: "blood vessel of main bronchus" EXACT [OBOL:automatic] synonym: "blood vessel of primary bronchus" EXACT [OBOL:automatic] synonym: "blood vessel of principal bronchus" EXACT [OBOL:automatic] synonym: "bronchus principalis blood vessel" EXACT [OBOL:automatic] synonym: "primary bronchus blood vessel" EXACT [OBOL:automatic] synonym: "principal bronchus blood vessel" EXACT [OBOL:automatic] xref: MA:0001844 is_a: UBERON:0000117 ! implied link automatically realized ! respiratory tube is_a: UBERON:0002340 ! implied link automatically realized ! epithelium of main bronchus is_a: UBERON:0003504 ! implied link automatically realized ! respiratory system blood vessel is_a: UBERON:0003519 ! implied link automatically realized ! thoracic cavity blood vessel relationship: part_of UBERON:0002182 intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0002182 ! main bronchus [Term] id: UBERON:0003519 name: thoracic cavity blood vessel def: "A blood vessel that is part of a thoracic cavity [Obol]." [OBOL:automatic] synonym: "blood vessel of cavity of chest" EXACT [OBOL:automatic] synonym: "blood vessel of cavity of thorax" EXACT [OBOL:automatic] synonym: "blood vessel of chest cavity" EXACT [OBOL:automatic] synonym: "blood vessel of pectoral cavity" EXACT [OBOL:automatic] synonym: "blood vessel of thoracic cavity" EXACT [OBOL:automatic] synonym: "cavity of chest blood vessel" EXACT [OBOL:automatic] synonym: "cavity of thorax blood vessel" EXACT [OBOL:automatic] synonym: "chest cavity blood vessel" EXACT [OBOL:automatic] synonym: "pectoral cavity blood vessel" EXACT [OBOL:automatic] xref: MA:0000554 is_a: UBERON:0003834 ! implied link automatically realized ! thoracic segment blood vessel relationship: part_of UBERON:0002224 intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0002224 ! thoracic cavity [Term] id: UBERON:0003520 name: pelvis blood vessel def: "A blood vessel that is part of a pelvis [Obol]." [OBOL:automatic] synonym: "blood vessel of pelvis" EXACT [OBOL:automatic] xref: MA:0000531 is_a: UBERON:0003835 ! implied link automatically realized ! abdominal segment blood vessel relationship: part_of UBERON:0002355 intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0002355 ! pelvis [Term] id: UBERON:0003521 name: foot blood vessel def: "A blood vessel that is part of a foot [Obol]." [OBOL:automatic] synonym: "autopod of hind limb blood vessel" EXACT [OBOL:automatic] synonym: "autopod of hindlimb blood vessel" EXACT [OBOL:automatic] synonym: "autopod of inferior member blood vessel" EXACT [OBOL:automatic] synonym: "autopod of lower extremity blood vessel" EXACT [OBOL:automatic] synonym: "blood vessel of autopod of hind limb" EXACT [OBOL:automatic] synonym: "blood vessel of autopod of hindlimb" EXACT [OBOL:automatic] synonym: "blood vessel of autopod of inferior member" EXACT [OBOL:automatic] synonym: "blood vessel of autopod of lower extremity" EXACT [OBOL:automatic] synonym: "blood vessel of distal free limb segment of hind limb" EXACT [OBOL:automatic] synonym: "blood vessel of distal free limb segment of hindlimb" EXACT [OBOL:automatic] synonym: "blood vessel of distal free limb segment of inferior member" EXACT [OBOL:automatic] synonym: "blood vessel of distal free limb segment of lower extremity" EXACT [OBOL:automatic] synonym: "blood vessel of foot" EXACT [OBOL:automatic] synonym: "blood vessel of hind limb autopod" EXACT [OBOL:automatic] synonym: "blood vessel of hind limb distal free limb segment" EXACT [OBOL:automatic] synonym: "blood vessel of hindlimb autopod" EXACT [OBOL:automatic] synonym: "blood vessel of hindlimb distal free limb segment" EXACT [OBOL:automatic] synonym: "blood vessel of inferior member autopod" EXACT [OBOL:automatic] synonym: "blood vessel of inferior member distal free limb segment" EXACT [OBOL:automatic] synonym: "blood vessel of lower extremity autopod" EXACT [OBOL:automatic] synonym: "blood vessel of lower extremity distal free limb segment" EXACT [OBOL:automatic] synonym: "blood vessel of terminal segment of free lower limb" EXACT [OBOL:automatic] synonym: "distal free limb segment of hind limb blood vessel" EXACT [OBOL:automatic] synonym: "distal free limb segment of hindlimb blood vessel" EXACT [OBOL:automatic] synonym: "distal free limb segment of inferior member blood vessel" EXACT [OBOL:automatic] synonym: "distal free limb segment of lower extremity blood vessel" EXACT [OBOL:automatic] synonym: "hind limb autopod blood vessel" EXACT [OBOL:automatic] synonym: "hind limb distal free limb segment blood vessel" EXACT [OBOL:automatic] synonym: "hindlimb autopod blood vessel" EXACT [OBOL:automatic] synonym: "hindlimb distal free limb segment blood vessel" EXACT [OBOL:automatic] synonym: "inferior member autopod blood vessel" EXACT [OBOL:automatic] synonym: "inferior member distal free limb segment blood vessel" EXACT [OBOL:automatic] synonym: "lower extremity autopod blood vessel" EXACT [OBOL:automatic] synonym: "lower extremity distal free limb segment blood vessel" EXACT [OBOL:automatic] synonym: "terminal segment of free lower limb blood vessel" EXACT [OBOL:automatic] xref: MA:0000642 is_a: UBERON:0003516 ! implied link automatically realized ! hindlimb blood vessel relationship: part_of UBERON:0002387 intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0002387 ! foot [Term] id: UBERON:0003522 name: hand digit blood vessel def: "A blood vessel that is part of a finger [Obol]." [OBOL:automatic] synonym: "blood vessel of digit of hand" EXACT [OBOL:automatic] synonym: "blood vessel of digit of terminal segment of free upper limb" EXACT [OBOL:automatic] synonym: "blood vessel of digitus manus" EXACT [OBOL:automatic] synonym: "blood vessel of finger" EXACT [OBOL:automatic] synonym: "blood vessel of hand digit" EXACT [OBOL:automatic] synonym: "blood vessel of terminal segment of free upper limb digit" EXACT [OBOL:automatic] synonym: "digit of hand blood vessel" EXACT [OBOL:automatic] synonym: "digit of terminal segment of free upper limb blood vessel" EXACT [OBOL:automatic] synonym: "digitus manus blood vessel" EXACT [OBOL:automatic] synonym: "finger blood vessel" EXACT [OBOL:automatic] synonym: "terminal segment of free upper limb digit blood vessel" EXACT [OBOL:automatic] xref: MA:0000621 is_a: UBERON:0003523 ! implied link automatically realized ! hand blood vessel is_a: UBERON:0005227 ! implied link automatically realized ! hand digit epithelium relationship: part_of UBERON:0002389 intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0002389 ! hand digit [Term] id: UBERON:0003523 name: hand blood vessel def: "A blood vessel that is part of a hand [Obol]." [OBOL:automatic] synonym: "arm autopod blood vessel" EXACT [OBOL:automatic] synonym: "arm distal free limb segment blood vessel" EXACT [OBOL:automatic] synonym: "autopod of arm blood vessel" EXACT [OBOL:automatic] synonym: "autopod of brachial region blood vessel" EXACT [OBOL:automatic] synonym: "autopod of proximal segment of free upper limb blood vessel" EXACT [OBOL:automatic] synonym: "blood vessel of arm autopod" EXACT [OBOL:automatic] synonym: "blood vessel of arm distal free limb segment" EXACT [OBOL:automatic] synonym: "blood vessel of autopod of arm" EXACT [OBOL:automatic] synonym: "blood vessel of autopod of brachial region" EXACT [OBOL:automatic] synonym: "blood vessel of autopod of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "blood vessel of brachial region autopod" EXACT [OBOL:automatic] synonym: "blood vessel of brachial region distal free limb segment" EXACT [OBOL:automatic] synonym: "blood vessel of distal free limb segment of arm" EXACT [OBOL:automatic] synonym: "blood vessel of distal free limb segment of brachial region" EXACT [OBOL:automatic] synonym: "blood vessel of distal free limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "blood vessel of hand" EXACT [OBOL:automatic] synonym: "blood vessel of proximal segment of free upper limb autopod" EXACT [OBOL:automatic] synonym: "blood vessel of proximal segment of free upper limb distal free limb segment" EXACT [OBOL:automatic] synonym: "blood vessel of terminal segment of free upper limb" EXACT [OBOL:automatic] synonym: "brachial region autopod blood vessel" EXACT [OBOL:automatic] synonym: "brachial region distal free limb segment blood vessel" EXACT [OBOL:automatic] synonym: "distal free limb segment of arm blood vessel" EXACT [OBOL:automatic] synonym: "distal free limb segment of brachial region blood vessel" EXACT [OBOL:automatic] synonym: "distal free limb segment of proximal segment of free upper limb blood vessel" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb autopod blood vessel" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb distal free limb segment blood vessel" EXACT [OBOL:automatic] synonym: "terminal segment of free upper limb blood vessel" EXACT [OBOL:automatic] xref: MA:0000618 is_a: UBERON:0003515 ! implied link automatically realized ! forelimb blood vessel relationship: part_of UBERON:0002398 intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0002398 ! hand [Term] id: UBERON:0003524 name: tail blood vessel def: "A blood vessel that is part of a tail [Obol]." [OBOL:automatic] synonym: "blood vessel of post-vent region" EXACT [OBOL:automatic] synonym: "blood vessel of tail" EXACT [OBOL:automatic] synonym: "post-vent region blood vessel" EXACT [OBOL:automatic] xref: MA:0000695 is_a: UBERON:0001981 ! implied link automatically realized ! blood vessel relationship: part_of UBERON:0007812 intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0007812 ! post-anal tail [Term] id: UBERON:0003526 name: respiratory system capillary def: "A capillary that is part of a respiratory system [Obol]." [OBOL:automatic] synonym: "apparatus respiratorius blood capillary" EXACT [OBOL:automatic] synonym: "apparatus respiratorius capillary" EXACT [OBOL:automatic] synonym: "apparatus respiratorius capillary vessel" EXACT [OBOL:automatic] synonym: "blood capillary of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "blood capillary of respiratory system" EXACT [OBOL:automatic] synonym: "capillary of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "capillary of respiratory system" EXACT [OBOL:automatic] synonym: "capillary vessel of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "capillary vessel of respiratory system" EXACT [OBOL:automatic] synonym: "respiratory system blood capillary" EXACT [OBOL:automatic] synonym: "respiratory system capillary vessel" EXACT [OBOL:automatic] xref: MA:0001807 is_a: UBERON:0001982 ! implied link automatically realized ! capillary is_a: UBERON:0003504 ! implied link automatically realized ! respiratory system blood vessel relationship: part_of UBERON:0001004 intersection_of: UBERON:0001982 ! capillary intersection_of: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0003527 name: kidney capillary def: "A capillary that is part of a kidney [Obol]." [OBOL:automatic] synonym: "blood capillary of kidney" EXACT [OBOL:automatic] synonym: "capillary of kidney" EXACT [OBOL:automatic] synonym: "capillary vessel of kidney" EXACT [OBOL:automatic] synonym: "kidney blood capillary" EXACT [OBOL:automatic] synonym: "kidney capillary vessel" EXACT [OBOL:automatic] synonym: "renal capillary" EXACT [OBOL:automatic] xref: EMAPA:31443 xref: MA:0002586 xref: SCTID:275409003 is_a: UBERON:0001982 ! implied link automatically realized ! capillary is_a: UBERON:0003517 ! implied link automatically realized ! kidney blood vessel relationship: part_of UBERON:0002113 intersection_of: UBERON:0001982 ! capillary intersection_of: part_of UBERON:0002113 ! kidney [Term] id: UBERON:0003528 name: brain grey matter def: "A gray matter of neuraxis that is part of a brain [Obol]." [OBOL:automatic] synonym: "brain gray matter" EXACT [OBOL:automatic] synonym: "brain gray matter of neuraxis" EXACT [OBOL:automatic] synonym: "brain grey substance" EXACT [OBOL:automatic] synonym: "gray matter of brain" EXACT [OBOL:automatic] synonym: "gray matter of neuraxis of brain" EXACT [OBOL:automatic] synonym: "grey matter of brain" EXACT [OBOL:automatic] synonym: "grey substance of brain" EXACT [OBOL:automatic] xref: MA:0000810 xref: ncithesaurus:Cerebral_Gray_Matter is_a: UBERON:0002020 ! implied link automatically realized ! gray matter of neuraxis is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain relationship: part_of UBERON:0000955 intersection_of: UBERON:0002020 ! gray matter of neuraxis intersection_of: part_of UBERON:0000955 ! brain [Term] id: UBERON:0003529 name: respiratory system lymphatic vessel endothelium def: "An endothelium of lymphatic vessel that is part of a respiratory system [Obol]." [OBOL:automatic] synonym: "apparatus respiratorius endothelium of lymph vessel" EXACT [OBOL:automatic] synonym: "apparatus respiratorius endothelium of lymphatic vessel" EXACT [OBOL:automatic] synonym: "apparatus respiratorius lymph vessel endothelium" EXACT [OBOL:automatic] synonym: "apparatus respiratorius lymphatic vessel endothelium" EXACT [OBOL:automatic] synonym: "endothelium of lymph vessel of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "endothelium of lymph vessel of respiratory system" EXACT [OBOL:automatic] synonym: "endothelium of lymphatic vessel of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "endothelium of lymphatic vessel of respiratory system" EXACT [OBOL:automatic] synonym: "lymph vessel endothelium of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "lymph vessel endothelium of respiratory system" EXACT [OBOL:automatic] synonym: "lymphatic vessel endothelium of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "lymphatic vessel endothelium of respiratory system" EXACT [OBOL:automatic] synonym: "respiratory system endothelium of lymph vessel" EXACT [OBOL:automatic] synonym: "respiratory system endothelium of lymphatic vessel" EXACT [OBOL:automatic] synonym: "respiratory system lymph vessel endothelium" EXACT [OBOL:automatic] xref: MA:0001825 is_a: UBERON:0002042 ! implied link automatically realized ! endothelium of lymphatic vessel is_a: UBERON:0004807 ! implied link automatically realized ! respiratory system epithelium relationship: part_of UBERON:0001004 intersection_of: UBERON:0002042 ! endothelium of lymphatic vessel intersection_of: part_of UBERON:0001004 ! respiratory system relationship: part_of UBERON:0003456 ! respiratory system lymphatic vessel [Term] id: UBERON:0003530 name: foot digit skin def: "A zone of skin that is part of a toe [Obol]." [OBOL:automatic] synonym: "digit of foot skin" EXACT [OBOL:automatic] synonym: "digit of terminal segment of free lower limb skin" EXACT [OBOL:automatic] synonym: "digitus pedis skin" EXACT [OBOL:automatic] synonym: "skin of digit of foot" EXACT [OBOL:automatic] synonym: "skin of digit of terminal segment of free lower limb" EXACT [OBOL:automatic] synonym: "skin of digitus pedis" EXACT [OBOL:automatic] synonym: "skin of foot digit" EXACT [OBOL:automatic] synonym: "skin of terminal segment of free lower limb digit" EXACT [OBOL:automatic] synonym: "skin of toe" EXACT [OBOL:automatic] synonym: "terminal segment of free lower limb digit skin" EXACT [OBOL:automatic] synonym: "toe skin" EXACT [OBOL:automatic] xref: FMA:37852 xref: MA:0000650 xref: ncithesaurus:Foot_Digit_Skin xref: SCTID:181530005 is_a: UBERON:0001513 ! implied link automatically realized ! skin of foot relationship: part_of UBERON:0001466 intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0001466 ! foot digit [Term] id: UBERON:0003531 name: forelimb skin def: "A zone of skin that is part of a forelimb [Obol]." [OBOL:automatic] synonym: "anteriormost limb skin" EXACT [OBOL:automatic] synonym: "fore limb skin" EXACT [OBOL:automatic] synonym: "skin of anteriormost limb" EXACT [OBOL:automatic] synonym: "skin of fore limb" EXACT [OBOL:automatic] synonym: "skin of forelimb" EXACT [OBOL:automatic] synonym: "skin of superior member" EXACT [OBOL:automatic] synonym: "skin of upper extremity" EXACT [OBOL:automatic] synonym: "skin of upper limb" EXACT [FMA:23101] synonym: "superior member skin" EXACT [OBOL:automatic] synonym: "upper extremity skin" EXACT [OBOL:automatic] synonym: "upper limb skin" EXACT [FMA:23101] xref: FMA:23101 xref: MA:0000617 xref: SCTID:244130001 is_a: UBERON:0001419 ! implied link automatically realized ! skin of limb relationship: part_of UBERON:0002102 intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0002102 ! forelimb [Term] id: UBERON:0003532 name: hindlimb skin def: "A zone of skin that is part of a hindlimb [Obol]." [OBOL:automatic] synonym: "hind limb skin" EXACT [OBOL:automatic] synonym: "inferior member skin" EXACT [OBOL:automatic] synonym: "lower extremity skin" EXACT [OBOL:automatic] synonym: "lower limb skin" EXACT [FMA:23102] synonym: "skin of hind limb" EXACT [OBOL:automatic] synonym: "skin of hindlimb" EXACT [OBOL:automatic] synonym: "skin of inferior member" EXACT [OBOL:automatic] synonym: "skin of lower extremity" EXACT [OBOL:automatic] synonym: "skin of lower limb" EXACT [FMA:23102] xref: FMA:23102 xref: MA:0000665 xref: SCTID:181528008 is_a: UBERON:0001419 ! implied link automatically realized ! skin of limb relationship: part_of UBERON:0002103 intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0003533 name: hand digit skin def: "A zone of skin that is part of a finger [Obol]." [OBOL:automatic] synonym: "digit of hand skin" EXACT [OBOL:automatic] synonym: "digit of terminal segment of free upper limb skin" EXACT [OBOL:automatic] synonym: "digitus manus skin" EXACT [OBOL:automatic] synonym: "finger skin" EXACT [OBOL:automatic] synonym: "skin of digit of hand" EXACT [OBOL:automatic] synonym: "skin of digit of terminal segment of free upper limb" EXACT [OBOL:automatic] synonym: "skin of digitus manus" EXACT [OBOL:automatic] synonym: "skin of finger" EXACT [OBOL:automatic] synonym: "skin of hand digit" EXACT [OBOL:automatic] synonym: "skin of terminal segment of free upper limb digit" EXACT [OBOL:automatic] synonym: "terminal segment of free upper limb digit skin" EXACT [OBOL:automatic] xref: FMA:38304 xref: MA:0000626 xref: ncithesaurus:Hand_Digit_Skin xref: SCTID:361711001 is_a: UBERON:0001519 ! implied link automatically realized ! skin of hand relationship: part_of UBERON:0002389 intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0002389 ! hand digit [Term] id: UBERON:0003534 name: tail skin def: "A zone of skin that is part of a tail [Obol]." [OBOL:automatic] synonym: "post-vent region skin" EXACT [OBOL:automatic] synonym: "skin of post-vent region" EXACT [OBOL:automatic] synonym: "skin of tail" EXACT [OBOL:automatic] xref: MA:0000700 xref: SCTID:67214004 is_a: UBERON:0000014 ! implied link automatically realized ! zone of skin relationship: part_of UBERON:0007812 intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0007812 ! post-anal tail [Term] id: UBERON:0003535 name: vagus X nerve trunk xref: FMA:6221 xref: MA:0001150 xref: SCTID:280308004 is_a: UBERON:0002464 ! implied link automatically realized ! nerve trunk relationship: part_of UBERON:0001759 intersection_of: UBERON:0002464 ! nerve trunk intersection_of: part_of UBERON:0001759 ! vagus nerve [Term] id: UBERON:0003536 name: right lung alveolar duct def: "An alveolar duct that is part of a right lung [Obol]." [OBOL:automatic] synonym: "alveolar duct of right lung" EXACT [OBOL:automatic] xref: EMAPA:19185 xref: EMAPA:19187 xref: EMAPA:19189 xref: EMAPA:19191 xref: MA:0001785 xref: ncithesaurus:Right_Lung_Alveolar_Duct is_a: UBERON:0002173 ! implied link automatically realized ! alveolar duct relationship: part_of UBERON:0002167 intersection_of: UBERON:0002173 ! alveolar duct intersection_of: part_of UBERON:0002167 ! right lung relationship: part_of UBERON:0006526 ! right lung alveolar system [Term] id: UBERON:0003537 name: left lung alveolar duct def: "An alveolar duct that is part of a left lung [Obol]." [OBOL:automatic] synonym: "alveolar duct of left lung" EXACT [OBOL:automatic] xref: EMAPA:19183 xref: MA:0001776 xref: ncithesaurus:Left_Lung_Alveolar_Duct is_a: UBERON:0002173 ! implied link automatically realized ! alveolar duct relationship: part_of UBERON:0002168 intersection_of: UBERON:0002173 ! alveolar duct intersection_of: part_of UBERON:0002168 ! left lung relationship: part_of UBERON:0006525 ! left lung alveolar system [Term] id: UBERON:0003538 name: right lung bronchiole def: "A bronchiole that is part of a right lung [Obol]." [OBOL:automatic] synonym: "bronchiole of right lung" EXACT [OBOL:automatic] synonym: "lobular bronchiole of right lung" EXACT [OBOL:automatic] synonym: "right lung lobular bronchiole" EXACT [OBOL:automatic] xref: EMAPA:19002 xref: EMAPA:19004 xref: EMAPA:19006 xref: EMAPA:19008 xref: MA:0001787 xref: ncithesaurus:Right_Lung_Bronchiole xref: SCTID:200089000 is_a: UBERON:0002186 ! implied link automatically realized ! bronchiole relationship: part_of UBERON:0002167 intersection_of: UBERON:0002186 ! bronchiole intersection_of: part_of UBERON:0002167 ! right lung [Term] id: UBERON:0003539 name: left lung bronchiole def: "A bronchiole that is part of a left lung [Obol]." [OBOL:automatic] synonym: "bronchiole of left lung" EXACT [OBOL:automatic] synonym: "left lung lobular bronchiole" EXACT [OBOL:automatic] synonym: "lobular bronchiole of left lung" EXACT [OBOL:automatic] xref: EMAPA:19000 xref: MA:0001778 xref: ncithesaurus:Left_Lung_Bronchiole xref: SCTID:200484003 is_a: UBERON:0002186 ! implied link automatically realized ! bronchiole relationship: part_of UBERON:0002168 intersection_of: UBERON:0002186 ! bronchiole intersection_of: part_of UBERON:0002168 ! left lung [Term] id: UBERON:0003540 name: right lung terminal bronchiole def: "A terminal bronchiole that is part of a right lung [Obol]." [OBOL:automatic] synonym: "bronchiolus terminalis of right lung" EXACT [OBOL:automatic] synonym: "right lung bronchiolus terminalis" EXACT [OBOL:automatic] synonym: "terminal bronchiole of right lung" EXACT [OBOL:automatic] xref: MA:0001789 xref: ncithesaurus:Right_Lung_Terminal_Bronchiole is_a: UBERON:0002187 ! implied link automatically realized ! terminal bronchiole is_a: UBERON:0003538 ! implied link automatically realized ! right lung bronchiole relationship: part_of UBERON:0002167 intersection_of: UBERON:0002187 ! terminal bronchiole intersection_of: part_of UBERON:0002167 ! right lung [Term] id: UBERON:0003541 name: left lung terminal bronchiole def: "A terminal bronchiole that is part of a left lung [Obol]." [OBOL:automatic] synonym: "bronchiolus terminalis of left lung" EXACT [OBOL:automatic] synonym: "left lung bronchiolus terminalis" EXACT [OBOL:automatic] synonym: "terminal bronchiole of left lung" EXACT [OBOL:automatic] xref: MA:0001780 xref: ncithesaurus:Left_Lung_Terminal_Bronchiole is_a: UBERON:0002187 ! implied link automatically realized ! terminal bronchiole is_a: UBERON:0003539 ! implied link automatically realized ! left lung bronchiole relationship: part_of UBERON:0002168 intersection_of: UBERON:0002187 ! terminal bronchiole intersection_of: part_of UBERON:0002168 ! left lung [Term] id: UBERON:0003542 name: right lung respiratory bronchiole def: "A respiratory bronchiole that is part of a right lung [Obol]." [OBOL:automatic] synonym: "bronchiolus respiratorius of right lung" EXACT [OBOL:automatic] synonym: "respiratory bronchiole of right lung" EXACT [OBOL:automatic] synonym: "right lung bronchiolus respiratorius" EXACT [OBOL:automatic] xref: MA:0001788 xref: ncithesaurus:Right_Lung_Respiratory_Bronchiole is_a: UBERON:0002188 ! implied link automatically realized ! respiratory bronchiole is_a: UBERON:0003538 ! implied link automatically realized ! right lung bronchiole relationship: part_of UBERON:0002167 intersection_of: UBERON:0002188 ! respiratory bronchiole intersection_of: part_of UBERON:0002167 ! right lung [Term] id: UBERON:0003543 name: left lung respiratory bronchiole def: "A respiratory bronchiole that is part of a left lung [Obol]." [OBOL:automatic] synonym: "bronchiolus respiratorius of left lung" EXACT [OBOL:automatic] synonym: "left lung bronchiolus respiratorius" EXACT [OBOL:automatic] synonym: "respiratory bronchiole of left lung" EXACT [OBOL:automatic] xref: MA:0001779 xref: ncithesaurus:Left_Lung_Respiratory_Bronchiole is_a: UBERON:0002188 ! implied link automatically realized ! respiratory bronchiole is_a: UBERON:0003539 ! implied link automatically realized ! left lung bronchiole relationship: part_of UBERON:0002168 intersection_of: UBERON:0002188 ! respiratory bronchiole intersection_of: part_of UBERON:0002168 ! left lung [Term] id: UBERON:0003544 name: brain white matter def: "the regions of the brain that are largely or entirely composed of myelinated nerve cell axons and contain few or no neural cell bodies or dendrites." [MP:0008026] synonym: "brain white matter of neuraxis" EXACT [OBOL:automatic] synonym: "brain white substance" EXACT [OBOL:automatic] synonym: "white matter of brain" EXACT [OBOL:automatic] synonym: "white matter of neuraxis of brain" EXACT [OBOL:automatic] synonym: "white substance of brain" EXACT [OBOL:automatic] xref: MA:0000820 xref: ncithesaurus:Brain_White_Matter is_a: UBERON:0002316 ! implied link automatically realized ! white matter is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain relationship: part_of UBERON:0000955 intersection_of: UBERON:0002316 ! white matter intersection_of: part_of UBERON:0000955 ! brain [Term] id: UBERON:0003545 name: brainstem white matter comment: obsoleted as definition is unclear. cerebellar peduncle originally classified here but in ABA brainstem and cerbellum are spatially disjoint xref: MA:0002741 is_obsolete: true [Term] id: UBERON:0003546 name: distal convoluted tubule macula densa def: "A macula densa that is part of a distal convoluted tubule [Obol]." [OBOL:automatic] xref: MA:0001668 is_a: UBERON:0002335 ! implied link automatically realized ! macula densa is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001292 intersection_of: UBERON:0002335 ! macula densa intersection_of: part_of UBERON:0001292 ! distal convoluted tubule relationship: part_of UBERON:0001292 {source="MA"} ! distal convoluted tubule relationship: part_of UBERON:0002335 {source="MA"} ! macula densa [Term] id: UBERON:0003547 name: brain meninx def: "A meninx that is part of a brain [Obol]." [OBOL:automatic] subset: organ_slim synonym: "brain meninges" EXACT [OBOL:automatic] synonym: "meninges of brain" EXACT [OBOL:automatic] synonym: "meninx of brain" EXACT [OBOL:automatic] xref: EV:0100312 xref: MA:0000813 xref: OG:0000013 is_a: UBERON:0002360 ! implied link automatically realized ! meninx is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain relationship: part_of UBERON:0000955 intersection_of: UBERON:0002360 ! meninx intersection_of: part_of UBERON:0000955 ! brain [Term] id: UBERON:0003548 name: forebrain meninges def: "A meninx that is part of a forebrain [Obol]." [OBOL:automatic] synonym: "forebrain meninx" EXACT [OBOL:automatic] synonym: "meninges of forebrain" EXACT [OBOL:automatic] synonym: "meninx of forebrain" EXACT [OBOL:automatic] xref: EMAPA:17764 xref: EMAPA:17774 xref: MA:0000883 is_a: UBERON:0002780 ! implied link automatically realized ! regional part of forebrain is_a: UBERON:0003547 ! implied link automatically realized ! brain meninx relationship: part_of UBERON:0001890 intersection_of: UBERON:0002360 ! meninx intersection_of: part_of UBERON:0001890 ! forebrain [Term] id: UBERON:0003549 name: brain pia mater def: "the fibrous membrane forming the innermost of the three coverings that surrounds the brain within the cranial cavity that is firmly attached to the glial capsule." [MP:0009026] synonym: "brain pia mater of neuraxis" EXACT [OBOL:automatic] synonym: "pia mater of brain" EXACT [OBOL:automatic] synonym: "pia mater of neuraxis of brain" EXACT [OBOL:automatic] xref: EV:0100315 xref: MA:0000816 xref: ncithesaurus:Brain_Pia_Mater xref: OG:0000470 is_a: UBERON:0002361 ! implied link automatically realized ! pia mater is_a: UBERON:0003547 ! implied link automatically realized ! brain meninx relationship: part_of UBERON:0000955 intersection_of: UBERON:0002361 ! pia mater intersection_of: part_of UBERON:0000955 ! brain [Term] id: UBERON:0003550 name: forebrain pia mater def: "A pia mater that is part of a forebrain [Obol]." [OBOL:automatic] synonym: "forebrain pia mater of neuraxis" EXACT [OBOL:automatic] synonym: "pia mater of forebrain" EXACT [OBOL:automatic] synonym: "pia mater of neuraxis of forebrain" EXACT [OBOL:automatic] xref: EMAPA:17767 xref: EMAPA:17777 xref: MA:0000886 is_a: UBERON:0003548 ! implied link automatically realized ! forebrain meninges is_a: UBERON:0003549 ! implied link automatically realized ! brain pia mater relationship: part_of UBERON:0001890 intersection_of: UBERON:0002361 ! pia mater intersection_of: part_of UBERON:0001890 ! forebrain [Term] id: UBERON:0003551 name: midbrain pia mater def: "A pia mater that is part of a midbrain [Obol]." [OBOL:automatic] synonym: "midbrain pia mater of neuraxis" EXACT [OBOL:automatic] synonym: "pia mater of midbrain" EXACT [OBOL:automatic] synonym: "pia mater of neuraxis of midbrain" EXACT [OBOL:automatic] xref: EHDAA2:0001110 xref: EHDAA2:0001175 xref: EMAPA:17794 xref: MA:0001061 xref: OG:0000467 is_a: UBERON:0003288 ! implied link automatically realized ! meninx of midbrain is_a: UBERON:0003549 ! implied link automatically realized ! brain pia mater relationship: part_of UBERON:0001891 intersection_of: UBERON:0002361 ! pia mater intersection_of: part_of UBERON:0001891 ! midbrain [Term] id: UBERON:0003552 name: telencephalon pia mater def: "A pia mater that is part of a telencephalon [Obol]." [OBOL:automatic] synonym: "pia mater of neuraxis of telencephalon" EXACT [OBOL:automatic] synonym: "pia mater of telencephalon" EXACT [OBOL:automatic] synonym: "telencephalon pia mater of neuraxis" EXACT [OBOL:automatic] xref: EHDAA2:0001992 xref: EMAPA:17777 xref: MA:0000982 xref: OG:0000476 is_a: UBERON:0003289 ! implied link automatically realized ! meninx of telencephalon is_a: UBERON:0003550 ! implied link automatically realized ! forebrain pia mater relationship: part_of UBERON:0001893 intersection_of: UBERON:0002361 ! pia mater intersection_of: part_of UBERON:0001893 ! telencephalon [Term] id: UBERON:0003553 name: diencephalon pia mater def: "A pia mater that is part of a diencephalon [Obol]." [OBOL:automatic] synonym: "between brain pia mater" EXACT [OBOL:automatic] synonym: "between brain pia mater of neuraxis" EXACT [OBOL:automatic] synonym: "diencephalon pia mater of neuraxis" EXACT [OBOL:automatic] synonym: "interbrain pia mater" EXACT [OBOL:automatic] synonym: "interbrain pia mater of neuraxis" EXACT [OBOL:automatic] synonym: "mature diencephalon pia mater" EXACT [OBOL:automatic] synonym: "mature diencephalon pia mater of neuraxis" EXACT [OBOL:automatic] synonym: "pia mater of between brain" EXACT [OBOL:automatic] synonym: "pia mater of diencephalon" EXACT [OBOL:automatic] synonym: "pia mater of interbrain" EXACT [OBOL:automatic] synonym: "pia mater of mature diencephalon" EXACT [OBOL:automatic] synonym: "pia mater of neuraxis of between brain" EXACT [OBOL:automatic] synonym: "pia mater of neuraxis of diencephalon" EXACT [OBOL:automatic] synonym: "pia mater of neuraxis of interbrain" EXACT [OBOL:automatic] synonym: "pia mater of neuraxis of mature diencephalon" EXACT [OBOL:automatic] xref: EHDAA2:0000400 xref: EMAPA:17767 xref: MA:0000829 xref: OG:0000475 is_a: UBERON:0003290 ! implied link automatically realized ! meninx of diencephalon is_a: UBERON:0003550 ! implied link automatically realized ! forebrain pia mater relationship: part_of UBERON:0001894 intersection_of: UBERON:0002361 ! pia mater intersection_of: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0003554 name: hindbrain pia mater def: "A pia mater that is part of a hindbrain [Obol]." [OBOL:automatic] synonym: "hindbrain pia mater of neuraxis" EXACT [OBOL:automatic] synonym: "pia mater of hindbrain" EXACT [OBOL:automatic] synonym: "pia mater of neuraxis of hindbrain" EXACT [OBOL:automatic] xref: EHDAA2:0000772 xref: EMAPA:17786 xref: MA:0000990 xref: OG:0000466 is_a: UBERON:0003291 ! implied link automatically realized ! meninx of hindbrain is_a: UBERON:0003549 ! implied link automatically realized ! brain pia mater relationship: part_of UBERON:0002028 intersection_of: UBERON:0002361 ! pia mater intersection_of: part_of UBERON:0002028 ! hindbrain [Term] id: UBERON:0003555 name: spinal cord pia mater def: "A pia mater that is part of a spinal cord [Obol]." [OBOL:automatic] subset: organ_slim synonym: "pia mater of neuraxis of spinal cord" EXACT [OBOL:automatic] synonym: "pia mater of spinal cord" EXACT [OBOL:automatic] synonym: "spinal cord pia mater of neuraxis" EXACT [OBOL:automatic] xref: EHDAA2:0001896 xref: EMAPA:17807 xref: MA:0001133 xref: ncithesaurus:Spinal_Cord_Pia_Mater xref: OG:0000468 is_a: UBERON:0002361 ! implied link automatically realized ! pia mater is_a: UBERON:0003292 ! implied link automatically realized ! meninx of spinal cord relationship: part_of UBERON:0002240 intersection_of: UBERON:0002361 ! pia mater intersection_of: part_of UBERON:0002240 ! spinal cord [Term] id: UBERON:0003556 name: forebrain arachnoid mater def: "An arachnoid mater that is part of a forebrain [Obol]." [OBOL:automatic] synonym: "arachnoid mater of forebrain" EXACT [OBOL:automatic] synonym: "arachnoid mater of neuraxis of forebrain" EXACT [OBOL:automatic] synonym: "arachnoid of forebrain" EXACT [OBOL:automatic] synonym: "forebrain arachnoid" EXACT [OBOL:automatic] synonym: "forebrain arachnoid mater of neuraxis" EXACT [OBOL:automatic] xref: EMAPA:17765 xref: EMAPA:17775 xref: MA:0000884 is_a: UBERON:0003548 ! implied link automatically realized ! forebrain meninges is_a: UBERON:0005397 ! implied link automatically realized ! brain arachnoid mater relationship: part_of UBERON:0001890 intersection_of: UBERON:0002362 ! arachnoid mater intersection_of: part_of UBERON:0001890 ! forebrain [Term] id: UBERON:0003557 name: midbrain arachnoid mater def: "An arachnoid mater that is part of a midbrain [Obol]." [OBOL:automatic] synonym: "arachnoid mater of midbrain" EXACT [OBOL:automatic] synonym: "arachnoid mater of neuraxis of midbrain" EXACT [OBOL:automatic] synonym: "arachnoid of midbrain" EXACT [OBOL:automatic] synonym: "midbrain arachnoid" EXACT [OBOL:automatic] synonym: "midbrain arachnoid mater of neuraxis" EXACT [OBOL:automatic] xref: EMAPA:17792 xref: MA:0001059 xref: OG:0000233 is_a: UBERON:0003288 ! implied link automatically realized ! meninx of midbrain is_a: UBERON:0005397 ! implied link automatically realized ! brain arachnoid mater relationship: part_of UBERON:0001891 intersection_of: UBERON:0002362 ! arachnoid mater intersection_of: part_of UBERON:0001891 ! midbrain [Term] id: UBERON:0003558 name: diencephalon arachnoid mater def: "An arachnoid mater that is part of a diencephalon [Obol]." [OBOL:automatic] synonym: "arachnoid mater of between brain" EXACT [OBOL:automatic] synonym: "arachnoid mater of diencephalon" EXACT [OBOL:automatic] synonym: "arachnoid mater of interbrain" EXACT [OBOL:automatic] synonym: "arachnoid mater of mature diencephalon" EXACT [OBOL:automatic] synonym: "arachnoid mater of neuraxis of between brain" EXACT [OBOL:automatic] synonym: "arachnoid mater of neuraxis of diencephalon" EXACT [OBOL:automatic] synonym: "arachnoid mater of neuraxis of interbrain" EXACT [OBOL:automatic] synonym: "arachnoid mater of neuraxis of mature diencephalon" EXACT [OBOL:automatic] synonym: "arachnoid of between brain" EXACT [OBOL:automatic] synonym: "arachnoid of diencephalon" EXACT [OBOL:automatic] synonym: "arachnoid of interbrain" EXACT [OBOL:automatic] synonym: "arachnoid of mature diencephalon" EXACT [OBOL:automatic] synonym: "between brain arachnoid" EXACT [OBOL:automatic] synonym: "between brain arachnoid mater" EXACT [OBOL:automatic] synonym: "between brain arachnoid mater of neuraxis" EXACT [OBOL:automatic] synonym: "diencephalon arachnoid" EXACT [OBOL:automatic] synonym: "diencephalon arachnoid mater of neuraxis" EXACT [OBOL:automatic] synonym: "interbrain arachnoid" EXACT [OBOL:automatic] synonym: "interbrain arachnoid mater" EXACT [OBOL:automatic] synonym: "interbrain arachnoid mater of neuraxis" EXACT [OBOL:automatic] synonym: "mature diencephalon arachnoid" EXACT [OBOL:automatic] synonym: "mature diencephalon arachnoid mater" EXACT [OBOL:automatic] synonym: "mature diencephalon arachnoid mater of neuraxis" EXACT [OBOL:automatic] xref: EMAPA:17765 xref: MA:0000827 xref: OG:0000231 is_a: UBERON:0003290 ! implied link automatically realized ! meninx of diencephalon is_a: UBERON:0003556 ! implied link automatically realized ! forebrain arachnoid mater relationship: part_of UBERON:0001894 intersection_of: UBERON:0002362 ! arachnoid mater intersection_of: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0003559 name: hindbrain arachnoid mater def: "An arachnoid mater that is part of a hindbrain [Obol]." [OBOL:automatic] synonym: "arachnoid mater of hindbrain" EXACT [OBOL:automatic] synonym: "arachnoid mater of neuraxis of hindbrain" EXACT [OBOL:automatic] synonym: "arachnoid of hindbrain" EXACT [OBOL:automatic] synonym: "hindbrain arachnoid" EXACT [OBOL:automatic] synonym: "hindbrain arachnoid mater of neuraxis" EXACT [OBOL:automatic] xref: EMAPA:17784 xref: MA:0000988 xref: OG:0000236 is_a: UBERON:0003291 ! implied link automatically realized ! meninx of hindbrain is_a: UBERON:0005397 ! implied link automatically realized ! brain arachnoid mater relationship: part_of UBERON:0002028 intersection_of: UBERON:0002362 ! arachnoid mater intersection_of: part_of UBERON:0002028 ! hindbrain [Term] id: UBERON:0003560 name: spinal cord arachnoid mater def: "An arachnoid mater that is part of a spinal cord [Obol]." [OBOL:automatic] subset: organ_slim synonym: "arachnoid mater of neuraxis of spinal cord" EXACT [OBOL:automatic] synonym: "arachnoid mater of spinal cord" EXACT [OBOL:automatic] synonym: "arachnoid of spinal cord" EXACT [OBOL:automatic] synonym: "spinal cord arachnoid" EXACT [OBOL:automatic] synonym: "spinal cord arachnoid mater of neuraxis" EXACT [OBOL:automatic] xref: EMAPA:17805 xref: MA:0001131 xref: OG:0000234 is_a: UBERON:0002362 ! implied link automatically realized ! arachnoid mater is_a: UBERON:0003292 ! implied link automatically realized ! meninx of spinal cord relationship: part_of UBERON:0002240 intersection_of: UBERON:0002362 ! arachnoid mater intersection_of: part_of UBERON:0002240 ! spinal cord [Term] id: UBERON:0003561 name: forebrain dura mater def: "A dura mater that is part of a forebrain [Obol]." [OBOL:automatic] synonym: "dura mater of forebrain" EXACT [OBOL:automatic] synonym: "dura mater of neuraxis of forebrain" EXACT [OBOL:automatic] synonym: "forebrain dura mater of neuraxis" EXACT [OBOL:automatic] xref: EMAPA:17766 xref: MA:0000885 is_a: UBERON:0002092 ! implied link automatically realized ! cranial dura mater is_a: UBERON:0003548 ! implied link automatically realized ! forebrain meninges relationship: part_of UBERON:0001890 intersection_of: UBERON:0002363 ! dura mater intersection_of: part_of UBERON:0001890 ! forebrain [Term] id: UBERON:0003562 name: midbrain dura mater def: "A dura mater that is part of a midbrain [Obol]." [OBOL:automatic] synonym: "dura mater of midbrain" EXACT [OBOL:automatic] synonym: "dura mater of neuraxis of midbrain" EXACT [OBOL:automatic] synonym: "midbrain dura mater of neuraxis" EXACT [OBOL:automatic] xref: EMAPA:17793 xref: MA:0001060 xref: OG:0000410 is_a: UBERON:0002092 ! implied link automatically realized ! cranial dura mater is_a: UBERON:0003288 ! implied link automatically realized ! meninx of midbrain relationship: part_of UBERON:0001891 intersection_of: UBERON:0002363 ! dura mater intersection_of: part_of UBERON:0001891 ! midbrain [Term] id: UBERON:0003563 name: telencephalon dura mater def: "A dura mater that is part of a telencephalon [Obol]." [OBOL:automatic] synonym: "dura mater of neuraxis of telencephalon" EXACT [OBOL:automatic] synonym: "dura mater of telencephalon" EXACT [OBOL:automatic] synonym: "telencephalon dura mater of neuraxis" EXACT [OBOL:automatic] xref: MA:0000981 is_a: UBERON:0003289 ! implied link automatically realized ! meninx of telencephalon is_a: UBERON:0003561 ! implied link automatically realized ! forebrain dura mater relationship: part_of UBERON:0001893 intersection_of: UBERON:0002363 ! dura mater intersection_of: part_of UBERON:0001893 ! telencephalon [Term] id: UBERON:0003564 name: diencephalon dura mater def: "A dura mater that is part of a diencephalon [Obol]." [OBOL:automatic] synonym: "between brain dura mater" EXACT [OBOL:automatic] synonym: "between brain dura mater of neuraxis" EXACT [OBOL:automatic] synonym: "diencephalon dura mater of neuraxis" EXACT [OBOL:automatic] synonym: "dura mater of between brain" EXACT [OBOL:automatic] synonym: "dura mater of diencephalon" EXACT [OBOL:automatic] synonym: "dura mater of interbrain" EXACT [OBOL:automatic] synonym: "dura mater of mature diencephalon" EXACT [OBOL:automatic] synonym: "dura mater of neuraxis of between brain" EXACT [OBOL:automatic] synonym: "dura mater of neuraxis of diencephalon" EXACT [OBOL:automatic] synonym: "dura mater of neuraxis of interbrain" EXACT [OBOL:automatic] synonym: "dura mater of neuraxis of mature diencephalon" EXACT [OBOL:automatic] synonym: "interbrain dura mater" EXACT [OBOL:automatic] synonym: "interbrain dura mater of neuraxis" EXACT [OBOL:automatic] synonym: "mature diencephalon dura mater" EXACT [OBOL:automatic] synonym: "mature diencephalon dura mater of neuraxis" EXACT [OBOL:automatic] xref: EMAPA:17766 xref: MA:0000828 xref: OG:0000258 is_a: UBERON:0003290 ! implied link automatically realized ! meninx of diencephalon is_a: UBERON:0003561 ! implied link automatically realized ! forebrain dura mater relationship: part_of UBERON:0001894 intersection_of: UBERON:0002363 ! dura mater intersection_of: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0003565 name: hindbrain dura mater def: "A dura mater that is part of a hindbrain [Obol]." [OBOL:automatic] synonym: "dura mater of hindbrain" EXACT [OBOL:automatic] synonym: "dura mater of neuraxis of hindbrain" EXACT [OBOL:automatic] synonym: "hindbrain dura mater of neuraxis" EXACT [OBOL:automatic] xref: EMAPA:17785 xref: MA:0000989 xref: OG:0000409 is_a: UBERON:0002092 ! implied link automatically realized ! cranial dura mater is_a: UBERON:0003291 ! implied link automatically realized ! meninx of hindbrain relationship: part_of UBERON:0002028 intersection_of: UBERON:0002363 ! dura mater intersection_of: part_of UBERON:0002028 ! hindbrain [Term] id: UBERON:0003566 name: head connective tissue def: "A portion of connective tissue that is part of a head [Obol]." [OBOL:automatic] synonym: "adult head connective tissue" EXACT [OBOL:automatic] synonym: "adult head portion of connective tissue" EXACT [OBOL:automatic] synonym: "adult head textus connectivus" EXACT [OBOL:automatic] synonym: "connective tissue of adult head" EXACT [OBOL:automatic] synonym: "connective tissue of head" EXACT [OBOL:automatic] synonym: "head portion of connective tissue" EXACT [OBOL:automatic] synonym: "head textus connectivus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of adult head" EXACT [OBOL:automatic] synonym: "portion of connective tissue of head" EXACT [OBOL:automatic] synonym: "textus connectivus of adult head" EXACT [OBOL:automatic] synonym: "textus connectivus of head" EXACT [OBOL:automatic] xref: MA:0000577 is_a: UBERON:0002384 ! implied link automatically realized ! connective tissue relationship: part_of UBERON:0000033 intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0000033 ! head [Term] id: UBERON:0003567 name: abdomen connective tissue def: "A portion of connective tissue that is part of an abdomen [Obol]." [OBOL:automatic] synonym: "abdomen portion of connective tissue" EXACT [OBOL:automatic] synonym: "abdomen textus connectivus" EXACT [OBOL:automatic] synonym: "connective tissue of abdomen" EXACT [OBOL:automatic] synonym: "portion of connective tissue of abdomen" EXACT [OBOL:automatic] synonym: "textus connectivus of abdomen" EXACT [OBOL:automatic] xref: MA:0000519 is_a: UBERON:0003838 ! implied link automatically realized ! abdominal segment connective tissue relationship: part_of UBERON:0000916 intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0000916 ! abdomen [Term] id: UBERON:0003568 name: neck connective tissue def: "A portion of connective tissue that is part of a neck [Obol]." [OBOL:automatic] synonym: "connective tissue of neck" EXACT [OBOL:automatic] synonym: "connective tissue of neck (volume)" EXACT [OBOL:automatic] synonym: "neck (volume) connective tissue" EXACT [OBOL:automatic] synonym: "neck (volume) portion of connective tissue" EXACT [OBOL:automatic] synonym: "neck (volume) textus connectivus" EXACT [OBOL:automatic] synonym: "neck portion of connective tissue" EXACT [OBOL:automatic] synonym: "neck textus connectivus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of neck" EXACT [OBOL:automatic] synonym: "portion of connective tissue of neck (volume)" EXACT [OBOL:automatic] synonym: "textus connectivus of neck" EXACT [OBOL:automatic] synonym: "textus connectivus of neck (volume)" EXACT [OBOL:automatic] xref: MA:0000585 is_a: UBERON:0002384 ! implied link automatically realized ! connective tissue relationship: part_of UBERON:0000974 intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0000974 ! neck [Term] id: UBERON:0003569 name: leg connective tissue def: "A portion of connective tissue that is part of a leg [Obol]." [OBOL:automatic] synonym: "connective tissue of leg" EXACT [OBOL:automatic] synonym: "leg portion of connective tissue" EXACT [OBOL:automatic] synonym: "leg textus connectivus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of leg" EXACT [OBOL:automatic] synonym: "textus connectivus of leg" EXACT [OBOL:automatic] xref: MA:0000671 is_a: UBERON:0003589 ! implied link automatically realized ! hindlimb connective tissue relationship: part_of UBERON:0000978 intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0000978 ! leg [Term] id: UBERON:0003570 name: respiratory system connective tissue def: "A portion of connective tissue that is part of a respiratory system [Obol]." [OBOL:automatic] synonym: "apparatus respiratorius connective tissue" EXACT [OBOL:automatic] synonym: "apparatus respiratorius portion of connective tissue" EXACT [OBOL:automatic] synonym: "apparatus respiratorius textus connectivus" EXACT [OBOL:automatic] synonym: "connective tissue of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "connective tissue of respiratory system" EXACT [OBOL:automatic] synonym: "portion of connective tissue of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "portion of connective tissue of respiratory system" EXACT [OBOL:automatic] synonym: "respiratory system portion of connective tissue" EXACT [OBOL:automatic] synonym: "respiratory system textus connectivus" EXACT [OBOL:automatic] synonym: "textus connectivus of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "textus connectivus of respiratory system" EXACT [OBOL:automatic] xref: MA:0001814 is_a: UBERON:0002384 ! implied link automatically realized ! connective tissue relationship: part_of UBERON:0001004 intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0003571 name: trachea connective tissue synonym: "connective tissue of trachea" EXACT [OBOL:automatic] synonym: "connective tissue of windpipe" EXACT [OBOL:automatic] synonym: "portion of connective tissue of trachea" EXACT [OBOL:automatic] synonym: "portion of connective tissue of windpipe" EXACT [OBOL:automatic] synonym: "textus connectivus of trachea" EXACT [OBOL:automatic] synonym: "textus connectivus of windpipe" EXACT [OBOL:automatic] synonym: "trachea portion of connective tissue" EXACT [OBOL:automatic] synonym: "trachea textus connectivus" EXACT [OBOL:automatic] synonym: "windpipe connective tissue" EXACT [OBOL:automatic] synonym: "windpipe portion of connective tissue" EXACT [OBOL:automatic] synonym: "windpipe textus connectivus" EXACT [OBOL:automatic] xref: MA:0001853 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003580 ! implied link automatically realized ! lower respiratory tract connective tissue is_a: UBERON:0003593 ! implied link automatically realized ! thoracic cavity connective tissue relationship: part_of UBERON:0003126 intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0003126 ! trachea [Term] id: UBERON:0003572 name: chest connective tissue def: "A portion of connective tissue that is part of a chest [Obol]." [OBOL:automatic] synonym: "anterior thoracic region connective tissue" EXACT [OBOL:automatic] synonym: "anterior thoracic region portion of connective tissue" EXACT [OBOL:automatic] synonym: "anterior thoracic region textus connectivus" EXACT [OBOL:automatic] synonym: "anterolateral part of thorax connective tissue" EXACT [OBOL:automatic] synonym: "anterolateral part of thorax portion of connective tissue" EXACT [OBOL:automatic] synonym: "anterolateral part of thorax textus connectivus" EXACT [OBOL:automatic] synonym: "chest portion of connective tissue" EXACT [OBOL:automatic] synonym: "chest textus connectivus" EXACT [OBOL:automatic] synonym: "connective tissue of anterior thoracic region" EXACT [OBOL:automatic] synonym: "connective tissue of anterolateral part of thorax" EXACT [OBOL:automatic] synonym: "connective tissue of chest" EXACT [OBOL:automatic] synonym: "connective tissue of front of thorax" EXACT [OBOL:automatic] synonym: "front of thorax connective tissue" EXACT [OBOL:automatic] synonym: "front of thorax portion of connective tissue" EXACT [OBOL:automatic] synonym: "front of thorax textus connectivus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of anterior thoracic region" EXACT [OBOL:automatic] synonym: "portion of connective tissue of anterolateral part of thorax" EXACT [OBOL:automatic] synonym: "portion of connective tissue of chest" EXACT [OBOL:automatic] synonym: "portion of connective tissue of front of thorax" EXACT [OBOL:automatic] synonym: "textus connectivus of anterior thoracic region" EXACT [OBOL:automatic] synonym: "textus connectivus of anterolateral part of thorax" EXACT [OBOL:automatic] synonym: "textus connectivus of chest" EXACT [OBOL:automatic] synonym: "textus connectivus of front of thorax" EXACT [OBOL:automatic] xref: MA:0000550 is_a: UBERON:0003837 ! implied link automatically realized ! thoracic segment connective tissue relationship: part_of UBERON:0001443 intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0001443 ! chest [Term] id: UBERON:0003573 name: arm connective tissue def: "A portion of connective tissue that is part of an arm [Obol]." [OBOL:automatic] synonym: "arm portion of connective tissue" EXACT [OBOL:automatic] synonym: "arm textus connectivus" EXACT [OBOL:automatic] synonym: "brachial region connective tissue" EXACT [OBOL:automatic] synonym: "brachial region portion of connective tissue" EXACT [OBOL:automatic] synonym: "brachial region textus connectivus" EXACT [OBOL:automatic] synonym: "connective tissue of arm" EXACT [OBOL:automatic] synonym: "connective tissue of brachial region" EXACT [OBOL:automatic] synonym: "connective tissue of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "portion of connective tissue of arm" EXACT [OBOL:automatic] synonym: "portion of connective tissue of brachial region" EXACT [OBOL:automatic] synonym: "portion of connective tissue of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb connective tissue" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb portion of connective tissue" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb textus connectivus" EXACT [OBOL:automatic] synonym: "textus connectivus of arm" EXACT [OBOL:automatic] synonym: "textus connectivus of brachial region" EXACT [OBOL:automatic] synonym: "textus connectivus of proximal segment of free upper limb" EXACT [OBOL:automatic] xref: MA:0000593 is_a: UBERON:0003588 ! implied link automatically realized ! forelimb connective tissue relationship: part_of UBERON:0001460 intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0001460 ! arm [Term] id: UBERON:0003574 name: elbow connective tissue def: "A portion of connective tissue that is part of a elbow [Obol]." [OBOL:automatic] synonym: "connective tissue of cubital region" EXACT [OBOL:automatic] synonym: "connective tissue of elbow" EXACT [OBOL:automatic] synonym: "cubital region connective tissue" EXACT [OBOL:automatic] synonym: "cubital region portion of connective tissue" EXACT [OBOL:automatic] synonym: "cubital region textus connectivus" EXACT [OBOL:automatic] synonym: "elbow portion of connective tissue" EXACT [OBOL:automatic] synonym: "elbow textus connectivus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of cubital region" EXACT [OBOL:automatic] synonym: "portion of connective tissue of elbow" EXACT [OBOL:automatic] synonym: "textus connectivus of cubital region" EXACT [OBOL:automatic] synonym: "textus connectivus of elbow" EXACT [OBOL:automatic] xref: MA:0000609 is_a: UBERON:0003573 ! implied link automatically realized ! arm connective tissue relationship: part_of UBERON:0001461 intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0001461 ! elbow [Term] id: UBERON:0003575 name: wrist connective tissue def: "A portion of connective tissue that is part of a wrist [Obol]." [OBOL:automatic] synonym: "carpal region connective tissue" EXACT [OBOL:automatic] synonym: "carpal region portion of connective tissue" EXACT [OBOL:automatic] synonym: "carpal region textus connectivus" EXACT [OBOL:automatic] synonym: "connective tissue of carpal region" EXACT [OBOL:automatic] synonym: "connective tissue of wrist" EXACT [OBOL:automatic] synonym: "portion of connective tissue of carpal region" EXACT [OBOL:automatic] synonym: "portion of connective tissue of wrist" EXACT [OBOL:automatic] synonym: "textus connectivus of carpal region" EXACT [OBOL:automatic] synonym: "textus connectivus of wrist" EXACT [OBOL:automatic] synonym: "wrist portion of connective tissue" EXACT [OBOL:automatic] synonym: "wrist textus connectivus" EXACT [OBOL:automatic] xref: MA:0000636 is_a: UBERON:0003588 ! implied link automatically realized ! forelimb connective tissue relationship: part_of UBERON:0001462 intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0001462 ! wrist [Term] id: UBERON:0003576 name: hip connective tissue def: "A portion of connective tissue that is part of a hip [Obol]." [OBOL:automatic] synonym: "connective tissue of hip" EXACT [OBOL:automatic] synonym: "connective tissue of hip region" EXACT [OBOL:automatic] synonym: "connective tissue of regio coxae" EXACT [OBOL:automatic] synonym: "hip portion of connective tissue" EXACT [OBOL:automatic] synonym: "hip region connective tissue" EXACT [OBOL:automatic] synonym: "hip region portion of connective tissue" EXACT [OBOL:automatic] synonym: "hip region textus connectivus" EXACT [OBOL:automatic] synonym: "hip textus connectivus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of hip" EXACT [OBOL:automatic] synonym: "portion of connective tissue of hip region" EXACT [OBOL:automatic] synonym: "portion of connective tissue of regio coxae" EXACT [OBOL:automatic] synonym: "regio coxae connective tissue" EXACT [OBOL:automatic] synonym: "regio coxae portion of connective tissue" EXACT [OBOL:automatic] synonym: "regio coxae textus connectivus" EXACT [OBOL:automatic] synonym: "textus connectivus of hip" EXACT [OBOL:automatic] synonym: "textus connectivus of hip region" EXACT [OBOL:automatic] synonym: "textus connectivus of regio coxae" EXACT [OBOL:automatic] xref: MA:0000656 is_a: UBERON:0003587 ! implied link automatically realized ! limb connective tissue relationship: part_of UBERON:0001464 intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0001464 ! hip [Term] id: UBERON:0003577 name: knee connective tissue def: "A portion of connective tissue that is part of a knee [Obol]." [OBOL:automatic] synonym: "connective tissue of knee" EXACT [OBOL:automatic] synonym: "knee portion of connective tissue" EXACT [OBOL:automatic] synonym: "knee textus connectivus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of knee" EXACT [OBOL:automatic] synonym: "textus connectivus of knee" EXACT [OBOL:automatic] xref: MA:0000667 is_a: UBERON:0003569 ! implied link automatically realized ! leg connective tissue relationship: part_of UBERON:0001465 intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0001465 ! knee [Term] id: UBERON:0003578 name: foot digit connective tissue def: "A portion of connective tissue that is part of a toe [Obol]." [OBOL:automatic] synonym: "connective tissue of digit of foot" EXACT [OBOL:automatic] synonym: "connective tissue of digit of terminal segment of free lower limb" EXACT [OBOL:automatic] synonym: "connective tissue of digitus pedis" EXACT [OBOL:automatic] synonym: "connective tissue of foot digit" EXACT [OBOL:automatic] synonym: "connective tissue of terminal segment of free lower limb digit" EXACT [OBOL:automatic] synonym: "connective tissue of toe" EXACT [OBOL:automatic] synonym: "digit of foot connective tissue" EXACT [OBOL:automatic] synonym: "digit of foot portion of connective tissue" EXACT [OBOL:automatic] synonym: "digit of foot textus connectivus" EXACT [OBOL:automatic] synonym: "digit of terminal segment of free lower limb connective tissue" EXACT [OBOL:automatic] synonym: "digit of terminal segment of free lower limb portion of connective tissue" EXACT [OBOL:automatic] synonym: "digit of terminal segment of free lower limb textus connectivus" EXACT [OBOL:automatic] synonym: "digitus pedis connective tissue" EXACT [OBOL:automatic] synonym: "digitus pedis portion of connective tissue" EXACT [OBOL:automatic] synonym: "digitus pedis textus connectivus" EXACT [OBOL:automatic] synonym: "foot digit portion of connective tissue" EXACT [OBOL:automatic] synonym: "foot digit textus connectivus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of digit of foot" EXACT [OBOL:automatic] synonym: "portion of connective tissue of digit of terminal segment of free lower limb" EXACT [OBOL:automatic] synonym: "portion of connective tissue of digitus pedis" EXACT [OBOL:automatic] synonym: "portion of connective tissue of foot digit" EXACT [OBOL:automatic] synonym: "portion of connective tissue of terminal segment of free lower limb digit" EXACT [OBOL:automatic] synonym: "portion of connective tissue of toe" EXACT [OBOL:automatic] synonym: "terminal segment of free lower limb digit connective tissue" EXACT [OBOL:automatic] synonym: "terminal segment of free lower limb digit portion of connective tissue" EXACT [OBOL:automatic] synonym: "terminal segment of free lower limb digit textus connectivus" EXACT [OBOL:automatic] synonym: "textus connectivus of digit of foot" EXACT [OBOL:automatic] synonym: "textus connectivus of digit of terminal segment of free lower limb" EXACT [OBOL:automatic] synonym: "textus connectivus of digitus pedis" EXACT [OBOL:automatic] synonym: "textus connectivus of foot digit" EXACT [OBOL:automatic] synonym: "textus connectivus of terminal segment of free lower limb digit" EXACT [OBOL:automatic] synonym: "textus connectivus of toe" EXACT [OBOL:automatic] synonym: "toe connective tissue" EXACT [OBOL:automatic] synonym: "toe portion of connective tissue" EXACT [OBOL:automatic] synonym: "toe textus connectivus" EXACT [OBOL:automatic] xref: MA:0000647 is_a: UBERON:0003595 ! implied link automatically realized ! foot connective tissue relationship: part_of UBERON:0001466 intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0001466 ! foot digit [Term] id: UBERON:0003579 name: shoulder connective tissue def: "A portion of connective tissue that is part of a shoulder [Obol]." [OBOL:automatic] synonym: "connective tissue of shoulder" EXACT [OBOL:automatic] synonym: "portion of connective tissue of shoulder" EXACT [OBOL:automatic] synonym: "shoulder portion of connective tissue" EXACT [OBOL:automatic] synonym: "shoulder textus connectivus" EXACT [OBOL:automatic] synonym: "textus connectivus of shoulder" EXACT [OBOL:automatic] xref: MA:0000632 is_a: UBERON:0003588 ! implied link automatically realized ! forelimb connective tissue relationship: part_of UBERON:0001467 intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0001467 ! shoulder [Term] id: UBERON:0003580 name: lower respiratory tract connective tissue def: "A portion of connective tissue that is part of a lower respiratory tract [Obol]." [OBOL:automatic] synonym: "connective tissue of lower respiratory tract" EXACT [OBOL:automatic] synonym: "lower respiratory tract portion of connective tissue" EXACT [OBOL:automatic] synonym: "lower respiratory tract textus connectivus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of lower respiratory tract" EXACT [OBOL:automatic] synonym: "textus connectivus of lower respiratory tract" EXACT [OBOL:automatic] xref: MA:0002409 is_a: UBERON:0003570 ! implied link automatically realized ! respiratory system connective tissue is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: part_of UBERON:0001558 intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0001558 ! lower respiratory tract [Term] id: UBERON:0003581 name: eyelid connective tissue def: "A portion of connective tissue that is part of a eyelid [Obol]." [OBOL:automatic] synonym: "blepharon connective tissue" EXACT [OBOL:automatic] synonym: "blepharon portion of connective tissue" EXACT [OBOL:automatic] synonym: "blepharon textus connectivus" EXACT [OBOL:automatic] synonym: "connective tissue of blepharon" EXACT [OBOL:automatic] synonym: "connective tissue of eyelid" EXACT [OBOL:automatic] synonym: "eyelid portion of connective tissue" EXACT [OBOL:automatic] synonym: "eyelid textus connectivus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of blepharon" EXACT [OBOL:automatic] synonym: "portion of connective tissue of eyelid" EXACT [OBOL:automatic] synonym: "textus connectivus of blepharon" EXACT [OBOL:automatic] synonym: "textus connectivus of eyelid" EXACT [OBOL:automatic] xref: MA:0001251 xref: ncithesaurus:Eyelid_Connective_Tissue is_a: UBERON:0003566 ! implied link automatically realized ! head connective tissue relationship: part_of UBERON:0001711 intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0001711 ! eyelid [Term] id: UBERON:0003582 name: nasopharynx connective tissue def: "A portion of connective tissue that is part of a nasopharynx [Obol]." [OBOL:automatic] synonym: "connective tissue of nasal part of pharynx" EXACT [OBOL:automatic] synonym: "connective tissue of nasopharynx" EXACT [OBOL:automatic] synonym: "connective tissue of rhinopharynx" EXACT [OBOL:automatic] synonym: "nasal part of pharynx connective tissue" EXACT [OBOL:automatic] synonym: "nasal part of pharynx portion of connective tissue" EXACT [OBOL:automatic] synonym: "nasal part of pharynx textus connectivus" EXACT [OBOL:automatic] synonym: "nasopharynx portion of connective tissue" EXACT [OBOL:automatic] synonym: "nasopharynx textus connectivus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of nasal part of pharynx" EXACT [OBOL:automatic] synonym: "portion of connective tissue of nasopharynx" EXACT [OBOL:automatic] synonym: "portion of connective tissue of rhinopharynx" EXACT [OBOL:automatic] synonym: "rhinopharynx connective tissue" EXACT [OBOL:automatic] synonym: "rhinopharynx portion of connective tissue" EXACT [OBOL:automatic] synonym: "rhinopharynx textus connectivus" EXACT [OBOL:automatic] synonym: "textus connectivus of nasal part of pharynx" EXACT [OBOL:automatic] synonym: "textus connectivus of nasopharynx" EXACT [OBOL:automatic] synonym: "textus connectivus of rhinopharynx" EXACT [OBOL:automatic] xref: MA:0001864 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003570 ! implied link automatically realized ! respiratory system connective tissue relationship: part_of UBERON:0001728 intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0001728 ! nasopharynx [Term] id: UBERON:0003583 name: larynx connective tissue def: "A portion of connective tissue that is part of a larynx [Obol]." [OBOL:automatic] synonym: "connective tissue of larynx" EXACT [OBOL:automatic] synonym: "larynx portion of connective tissue" EXACT [OBOL:automatic] synonym: "larynx textus connectivus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of larynx" EXACT [OBOL:automatic] synonym: "textus connectivus of larynx" EXACT [OBOL:automatic] xref: MA:0001754 xref: ncithesaurus:Laryngeal_Connective_Tissue is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003570 ! implied link automatically realized ! respiratory system connective tissue relationship: part_of UBERON:0001737 intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0001737 ! larynx [Term] id: UBERON:0003584 name: mammary gland connective tissue def: "the fibrous supportive tissue of the mammary gland." [MP:0009507] synonym: "connective tissue of lactiferous gland" EXACT [OBOL:automatic] synonym: "connective tissue of lobe of breast" EXACT [OBOL:automatic] synonym: "connective tissue of lobe of mammary gland" EXACT [OBOL:automatic] synonym: "connective tissue of mammary gland" EXACT [OBOL:automatic] synonym: "lactiferous gland connective tissue" EXACT [OBOL:automatic] synonym: "lactiferous gland portion of connective tissue" EXACT [OBOL:automatic] synonym: "lactiferous gland textus connectivus" EXACT [OBOL:automatic] synonym: "lobe of breast connective tissue" EXACT [OBOL:automatic] synonym: "lobe of breast portion of connective tissue" EXACT [OBOL:automatic] synonym: "lobe of breast textus connectivus" EXACT [OBOL:automatic] synonym: "lobe of mammary gland connective tissue" EXACT [OBOL:automatic] synonym: "lobe of mammary gland portion of connective tissue" EXACT [OBOL:automatic] synonym: "lobe of mammary gland textus connectivus" EXACT [OBOL:automatic] synonym: "mammary gland portion of connective tissue" EXACT [OBOL:automatic] synonym: "mammary gland textus connectivus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of lactiferous gland" EXACT [OBOL:automatic] synonym: "portion of connective tissue of lobe of breast" EXACT [OBOL:automatic] synonym: "portion of connective tissue of lobe of mammary gland" EXACT [OBOL:automatic] synonym: "portion of connective tissue of mammary gland" EXACT [OBOL:automatic] synonym: "textus connectivus of lactiferous gland" EXACT [OBOL:automatic] synonym: "textus connectivus of lobe of breast" EXACT [OBOL:automatic] synonym: "textus connectivus of lobe of mammary gland" EXACT [OBOL:automatic] synonym: "textus connectivus of mammary gland" EXACT [OBOL:automatic] xref: FMA:74479 xref: MA:0002897 is_a: UBERON:0002384 ! implied link automatically realized ! connective tissue is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001911 intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0001911 ! mammary gland [Term] id: UBERON:0003585 name: dermis connective tissue def: "A portion of connective tissue that is part of a dermis [Obol]." [OBOL:automatic] synonym: "connective tissue of dermis" EXACT [OBOL:automatic] synonym: "dermis portion of connective tissue" EXACT [OBOL:automatic] synonym: "dermis textus connectivus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of dermis" EXACT [OBOL:automatic] synonym: "textus connectivus of dermis" EXACT [OBOL:automatic] xref: MA:0000799 is_a: UBERON:0002384 ! implied link automatically realized ! connective tissue is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0002067 intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0002067 ! dermis [Term] id: UBERON:0003586 name: trunk connective tissue def: "A portion of connective tissue that is part of a trunk [Obol]." [OBOL:automatic] synonym: "connective tissue of torso" EXACT [OBOL:automatic] synonym: "connective tissue of trunk" EXACT [OBOL:automatic] synonym: "portion of connective tissue of torso" EXACT [OBOL:automatic] synonym: "portion of connective tissue of trunk" EXACT [OBOL:automatic] synonym: "textus connectivus of torso" EXACT [OBOL:automatic] synonym: "textus connectivus of trunk" EXACT [OBOL:automatic] synonym: "torso connective tissue" EXACT [OBOL:automatic] synonym: "torso portion of connective tissue" EXACT [OBOL:automatic] synonym: "torso textus connectivus" EXACT [OBOL:automatic] synonym: "trunk portion of connective tissue" EXACT [OBOL:automatic] synonym: "trunk textus connectivus" EXACT [OBOL:automatic] xref: MA:0000513 is_a: UBERON:0002384 ! implied link automatically realized ! connective tissue relationship: part_of UBERON:0002100 intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0002100 ! trunk [Term] id: UBERON:0003587 name: limb connective tissue def: "A portion of connective tissue that is part of a limb [Obol]." [OBOL:automatic] synonym: "connective tissue of limb" EXACT [OBOL:automatic] synonym: "limb portion of connective tissue" EXACT [OBOL:automatic] synonym: "limb textus connectivus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of limb" EXACT [OBOL:automatic] synonym: "textus connectivus of limb" EXACT [OBOL:automatic] xref: MA:0000689 is_a: UBERON:0002384 ! implied link automatically realized ! connective tissue is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0002101 intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0002101 ! limb [Term] id: UBERON:0003588 name: forelimb connective tissue def: "A portion of connective tissue that is part of a forelimb [Obol]." [OBOL:automatic] synonym: "anteriormost limb connective tissue" EXACT [OBOL:automatic] synonym: "anteriormost limb portion of connective tissue" EXACT [OBOL:automatic] synonym: "anteriormost limb textus connectivus" EXACT [OBOL:automatic] synonym: "connective tissue of anteriormost limb" EXACT [OBOL:automatic] synonym: "connective tissue of fore limb" EXACT [OBOL:automatic] synonym: "connective tissue of forelimb" EXACT [OBOL:automatic] synonym: "connective tissue of superior member" EXACT [OBOL:automatic] synonym: "connective tissue of upper extremity" EXACT [OBOL:automatic] synonym: "fore limb connective tissue" EXACT [OBOL:automatic] synonym: "fore limb portion of connective tissue" EXACT [OBOL:automatic] synonym: "fore limb textus connectivus" EXACT [OBOL:automatic] synonym: "forelimb portion of connective tissue" EXACT [OBOL:automatic] synonym: "forelimb textus connectivus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of anteriormost limb" EXACT [OBOL:automatic] synonym: "portion of connective tissue of fore limb" EXACT [OBOL:automatic] synonym: "portion of connective tissue of forelimb" EXACT [OBOL:automatic] synonym: "portion of connective tissue of superior member" EXACT [OBOL:automatic] synonym: "portion of connective tissue of upper extremity" EXACT [OBOL:automatic] synonym: "superior member connective tissue" EXACT [OBOL:automatic] synonym: "superior member portion of connective tissue" EXACT [OBOL:automatic] synonym: "superior member textus connectivus" EXACT [OBOL:automatic] synonym: "textus connectivus of anteriormost limb" EXACT [OBOL:automatic] synonym: "textus connectivus of fore limb" EXACT [OBOL:automatic] synonym: "textus connectivus of forelimb" EXACT [OBOL:automatic] synonym: "textus connectivus of superior member" EXACT [OBOL:automatic] synonym: "textus connectivus of upper extremity" EXACT [OBOL:automatic] synonym: "upper extremity connective tissue" EXACT [OBOL:automatic] synonym: "upper extremity portion of connective tissue" EXACT [OBOL:automatic] synonym: "upper extremity textus connectivus" EXACT [OBOL:automatic] xref: MA:0000613 is_a: UBERON:0003587 ! implied link automatically realized ! limb connective tissue relationship: part_of UBERON:0002102 intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0002102 ! forelimb [Term] id: UBERON:0003589 name: hindlimb connective tissue def: "A portion of connective tissue that is part of a hindlimb [Obol]." [OBOL:automatic] synonym: "connective tissue of hind limb" EXACT [OBOL:automatic] synonym: "connective tissue of hindlimb" EXACT [OBOL:automatic] synonym: "connective tissue of inferior member" EXACT [OBOL:automatic] synonym: "connective tissue of lower extremity" EXACT [OBOL:automatic] synonym: "hind limb connective tissue" EXACT [OBOL:automatic] synonym: "hind limb portion of connective tissue" EXACT [OBOL:automatic] synonym: "hind limb textus connectivus" EXACT [OBOL:automatic] synonym: "hindlimb portion of connective tissue" EXACT [OBOL:automatic] synonym: "hindlimb textus connectivus" EXACT [OBOL:automatic] synonym: "inferior member connective tissue" EXACT [OBOL:automatic] synonym: "inferior member portion of connective tissue" EXACT [OBOL:automatic] synonym: "inferior member textus connectivus" EXACT [OBOL:automatic] synonym: "lower extremity connective tissue" EXACT [OBOL:automatic] synonym: "lower extremity portion of connective tissue" EXACT [OBOL:automatic] synonym: "lower extremity textus connectivus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of hind limb" EXACT [OBOL:automatic] synonym: "portion of connective tissue of hindlimb" EXACT [OBOL:automatic] synonym: "portion of connective tissue of inferior member" EXACT [OBOL:automatic] synonym: "portion of connective tissue of lower extremity" EXACT [OBOL:automatic] synonym: "textus connectivus of hind limb" EXACT [OBOL:automatic] synonym: "textus connectivus of hindlimb" EXACT [OBOL:automatic] synonym: "textus connectivus of inferior member" EXACT [OBOL:automatic] synonym: "textus connectivus of lower extremity" EXACT [OBOL:automatic] xref: MA:0000661 is_a: UBERON:0003587 ! implied link automatically realized ! limb connective tissue relationship: part_of UBERON:0002103 intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0003590 name: main bronchus connective tissue def: "A portion of connective tissue that is part of a main bronchus [Obol]." [OBOL:automatic] synonym: "bronchus principalis connective tissue" EXACT [OBOL:automatic] synonym: "bronchus principalis portion of connective tissue" EXACT [OBOL:automatic] synonym: "bronchus principalis textus connectivus" EXACT [OBOL:automatic] synonym: "connective tissue of bronchus principalis" EXACT [OBOL:automatic] synonym: "connective tissue of main bronchus" EXACT [OBOL:automatic] synonym: "connective tissue of primary bronchus" EXACT [OBOL:automatic] synonym: "connective tissue of principal bronchus" EXACT [OBOL:automatic] synonym: "main bronchus portion of connective tissue" EXACT [OBOL:automatic] synonym: "main bronchus textus connectivus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of bronchus principalis" EXACT [OBOL:automatic] synonym: "portion of connective tissue of main bronchus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of primary bronchus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of principal bronchus" EXACT [OBOL:automatic] synonym: "primary bronchus connective tissue" EXACT [OBOL:automatic] synonym: "primary bronchus portion of connective tissue" EXACT [OBOL:automatic] synonym: "primary bronchus textus connectivus" EXACT [OBOL:automatic] synonym: "principal bronchus connective tissue" EXACT [OBOL:automatic] synonym: "principal bronchus portion of connective tissue" EXACT [OBOL:automatic] synonym: "principal bronchus textus connectivus" EXACT [OBOL:automatic] synonym: "textus connectivus of bronchus principalis" EXACT [OBOL:automatic] synonym: "textus connectivus of main bronchus" EXACT [OBOL:automatic] synonym: "textus connectivus of primary bronchus" EXACT [OBOL:automatic] synonym: "textus connectivus of principal bronchus" EXACT [OBOL:automatic] xref: MA:0001845 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003592 ! implied link automatically realized ! bronchus connective tissue relationship: part_of UBERON:0002182 intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0002182 ! main bronchus [Term] id: UBERON:0003591 name: lobar bronchus connective tissue def: "A portion of connective tissue that is part of a lobar bronchus [Obol]." [OBOL:automatic] synonym: "connective tissue of lobar bronchus" EXACT [OBOL:automatic] synonym: "connective tissue of secondary bronchus" EXACT [OBOL:automatic] synonym: "lobar bronchus portion of connective tissue" EXACT [OBOL:automatic] synonym: "lobar bronchus textus connectivus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of lobar bronchus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of secondary bronchus" EXACT [OBOL:automatic] synonym: "secondary bronchus connective tissue" EXACT [OBOL:automatic] synonym: "secondary bronchus portion of connective tissue" EXACT [OBOL:automatic] synonym: "secondary bronchus textus connectivus" EXACT [OBOL:automatic] synonym: "textus connectivus of lobar bronchus" EXACT [OBOL:automatic] synonym: "textus connectivus of secondary bronchus" EXACT [OBOL:automatic] xref: MA:0001841 is_a: UBERON:0000114 ! implied link automatically realized ! lung connective tissue is_a: UBERON:0003592 ! implied link automatically realized ! bronchus connective tissue relationship: part_of UBERON:0002183 intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0002183 ! lobar bronchus [Term] id: UBERON:0003592 name: bronchus connective tissue def: "A portion of connective tissue that is part of a bronchus [Obol]." [OBOL:automatic] synonym: "bronchi connective tissue" EXACT [OBOL:automatic] synonym: "bronchi portion of connective tissue" EXACT [OBOL:automatic] synonym: "bronchi textus connectivus" EXACT [OBOL:automatic] synonym: "bronchial trunk connective tissue" EXACT [OBOL:automatic] synonym: "bronchial trunk portion of connective tissue" EXACT [OBOL:automatic] synonym: "bronchial trunk textus connectivus" EXACT [OBOL:automatic] synonym: "bronchus portion of connective tissue" EXACT [OBOL:automatic] synonym: "bronchus textus connectivus" EXACT [OBOL:automatic] synonym: "connective tissue of bronchi" EXACT [OBOL:automatic] synonym: "connective tissue of bronchial trunk" EXACT [OBOL:automatic] synonym: "connective tissue of bronchus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of bronchi" EXACT [OBOL:automatic] synonym: "portion of connective tissue of bronchial trunk" EXACT [OBOL:automatic] synonym: "portion of connective tissue of bronchus" EXACT [OBOL:automatic] synonym: "textus connectivus of bronchi" EXACT [OBOL:automatic] synonym: "textus connectivus of bronchial trunk" EXACT [OBOL:automatic] synonym: "textus connectivus of bronchus" EXACT [OBOL:automatic] xref: MA:0001831 xref: ncithesaurus:Bronchus_Connective_Tissue is_a: UBERON:0003580 ! implied link automatically realized ! lower respiratory tract connective tissue is_a: UBERON:0003593 ! implied link automatically realized ! thoracic cavity connective tissue relationship: part_of UBERON:0002185 intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0002185 ! bronchus [Term] id: UBERON:0003593 name: thoracic cavity connective tissue def: "A portion of connective tissue that is part of a thoracic cavity [Obol]." [OBOL:automatic] synonym: "cavity of chest connective tissue" EXACT [OBOL:automatic] synonym: "cavity of chest portion of connective tissue" EXACT [OBOL:automatic] synonym: "cavity of chest textus connectivus" EXACT [OBOL:automatic] synonym: "cavity of thorax connective tissue" EXACT [OBOL:automatic] synonym: "cavity of thorax portion of connective tissue" EXACT [OBOL:automatic] synonym: "cavity of thorax textus connectivus" EXACT [OBOL:automatic] synonym: "chest cavity connective tissue" EXACT [OBOL:automatic] synonym: "chest cavity portion of connective tissue" EXACT [OBOL:automatic] synonym: "chest cavity textus connectivus" EXACT [OBOL:automatic] synonym: "connective tissue of cavity of chest" EXACT [OBOL:automatic] synonym: "connective tissue of cavity of thorax" EXACT [OBOL:automatic] synonym: "connective tissue of chest cavity" EXACT [OBOL:automatic] synonym: "connective tissue of pectoral cavity" EXACT [OBOL:automatic] synonym: "connective tissue of thoracic cavity" EXACT [OBOL:automatic] synonym: "pectoral cavity connective tissue" EXACT [OBOL:automatic] synonym: "pectoral cavity portion of connective tissue" EXACT [OBOL:automatic] synonym: "pectoral cavity textus connectivus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of cavity of chest" EXACT [OBOL:automatic] synonym: "portion of connective tissue of cavity of thorax" EXACT [OBOL:automatic] synonym: "portion of connective tissue of chest cavity" EXACT [OBOL:automatic] synonym: "portion of connective tissue of pectoral cavity" EXACT [OBOL:automatic] synonym: "portion of connective tissue of thoracic cavity" EXACT [OBOL:automatic] synonym: "textus connectivus of cavity of chest" EXACT [OBOL:automatic] synonym: "textus connectivus of cavity of thorax" EXACT [OBOL:automatic] synonym: "textus connectivus of chest cavity" EXACT [OBOL:automatic] synonym: "textus connectivus of pectoral cavity" EXACT [OBOL:automatic] synonym: "textus connectivus of thoracic cavity" EXACT [OBOL:automatic] synonym: "thoracic cavity portion of connective tissue" EXACT [OBOL:automatic] synonym: "thoracic cavity textus connectivus" EXACT [OBOL:automatic] xref: MA:0000555 is_a: UBERON:0003837 ! implied link automatically realized ! thoracic segment connective tissue relationship: part_of UBERON:0002224 intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0002224 ! thoracic cavity [Term] id: UBERON:0003594 name: pelvis connective tissue def: "A portion of connective tissue that is part of a pelvis [Obol]." [OBOL:automatic] synonym: "connective tissue of pelvis" EXACT [OBOL:automatic] synonym: "pelvis portion of connective tissue" EXACT [OBOL:automatic] synonym: "pelvis textus connectivus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of pelvis" EXACT [OBOL:automatic] synonym: "textus connectivus of pelvis" EXACT [OBOL:automatic] xref: MA:0000533 is_a: UBERON:0003838 ! implied link automatically realized ! abdominal segment connective tissue relationship: part_of UBERON:0002355 intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0002355 ! pelvis [Term] id: UBERON:0003595 name: foot connective tissue def: "A portion of connective tissue that is part of a foot [Obol]." [OBOL:automatic] synonym: "autopod of hind limb connective tissue" EXACT [OBOL:automatic] synonym: "autopod of hind limb portion of connective tissue" EXACT [OBOL:automatic] synonym: "autopod of hind limb textus connectivus" EXACT [OBOL:automatic] synonym: "autopod of hindlimb connective tissue" EXACT [OBOL:automatic] synonym: "autopod of hindlimb portion of connective tissue" EXACT [OBOL:automatic] synonym: "autopod of hindlimb textus connectivus" EXACT [OBOL:automatic] synonym: "autopod of inferior member connective tissue" EXACT [OBOL:automatic] synonym: "autopod of inferior member portion of connective tissue" EXACT [OBOL:automatic] synonym: "autopod of inferior member textus connectivus" EXACT [OBOL:automatic] synonym: "autopod of lower extremity connective tissue" EXACT [OBOL:automatic] synonym: "autopod of lower extremity portion of connective tissue" EXACT [OBOL:automatic] synonym: "autopod of lower extremity textus connectivus" EXACT [OBOL:automatic] synonym: "connective tissue of autopod of hind limb" EXACT [OBOL:automatic] synonym: "connective tissue of autopod of hindlimb" EXACT [OBOL:automatic] synonym: "connective tissue of autopod of inferior member" EXACT [OBOL:automatic] synonym: "connective tissue of autopod of lower extremity" EXACT [OBOL:automatic] synonym: "connective tissue of distal free limb segment of hind limb" EXACT [OBOL:automatic] synonym: "connective tissue of distal free limb segment of hindlimb" EXACT [OBOL:automatic] synonym: "connective tissue of distal free limb segment of inferior member" EXACT [OBOL:automatic] synonym: "connective tissue of distal free limb segment of lower extremity" EXACT [OBOL:automatic] synonym: "connective tissue of foot" EXACT [OBOL:automatic] synonym: "connective tissue of hind limb autopod" EXACT [OBOL:automatic] synonym: "connective tissue of hind limb distal free limb segment" EXACT [OBOL:automatic] synonym: "connective tissue of hindlimb autopod" EXACT [OBOL:automatic] synonym: "connective tissue of hindlimb distal free limb segment" EXACT [OBOL:automatic] synonym: "connective tissue of inferior member autopod" EXACT [OBOL:automatic] synonym: "connective tissue of inferior member distal free limb segment" EXACT [OBOL:automatic] synonym: "connective tissue of lower extremity autopod" EXACT [OBOL:automatic] synonym: "connective tissue of lower extremity distal free limb segment" EXACT [OBOL:automatic] synonym: "connective tissue of terminal segment of free lower limb" EXACT [OBOL:automatic] synonym: "distal free limb segment of hind limb connective tissue" EXACT [OBOL:automatic] synonym: "distal free limb segment of hind limb portion of connective tissue" EXACT [OBOL:automatic] synonym: "distal free limb segment of hind limb textus connectivus" EXACT [OBOL:automatic] synonym: "distal free limb segment of hindlimb connective tissue" EXACT [OBOL:automatic] synonym: "distal free limb segment of hindlimb portion of connective tissue" EXACT [OBOL:automatic] synonym: "distal free limb segment of hindlimb textus connectivus" EXACT [OBOL:automatic] synonym: "distal free limb segment of inferior member connective tissue" EXACT [OBOL:automatic] synonym: "distal free limb segment of inferior member portion of connective tissue" EXACT [OBOL:automatic] synonym: "distal free limb segment of inferior member textus connectivus" EXACT [OBOL:automatic] synonym: "distal free limb segment of lower extremity connective tissue" EXACT [OBOL:automatic] synonym: "distal free limb segment of lower extremity portion of connective tissue" EXACT [OBOL:automatic] synonym: "distal free limb segment of lower extremity textus connectivus" EXACT [OBOL:automatic] synonym: "foot portion of connective tissue" EXACT [OBOL:automatic] synonym: "foot textus connectivus" EXACT [OBOL:automatic] synonym: "hind limb autopod connective tissue" EXACT [OBOL:automatic] synonym: "hind limb autopod portion of connective tissue" EXACT [OBOL:automatic] synonym: "hind limb autopod textus connectivus" EXACT [OBOL:automatic] synonym: "hind limb distal free limb segment connective tissue" EXACT [OBOL:automatic] synonym: "hind limb distal free limb segment portion of connective tissue" EXACT [OBOL:automatic] synonym: "hind limb distal free limb segment textus connectivus" EXACT [OBOL:automatic] synonym: "hindlimb autopod connective tissue" EXACT [OBOL:automatic] synonym: "hindlimb autopod portion of connective tissue" EXACT [OBOL:automatic] synonym: "hindlimb autopod textus connectivus" EXACT [OBOL:automatic] synonym: "hindlimb distal free limb segment connective tissue" EXACT [OBOL:automatic] synonym: "hindlimb distal free limb segment portion of connective tissue" EXACT [OBOL:automatic] synonym: "hindlimb distal free limb segment textus connectivus" EXACT [OBOL:automatic] synonym: "inferior member autopod connective tissue" EXACT [OBOL:automatic] synonym: "inferior member autopod portion of connective tissue" EXACT [OBOL:automatic] synonym: "inferior member autopod textus connectivus" EXACT [OBOL:automatic] synonym: "inferior member distal free limb segment connective tissue" EXACT [OBOL:automatic] synonym: "inferior member distal free limb segment portion of connective tissue" EXACT [OBOL:automatic] synonym: "inferior member distal free limb segment textus connectivus" EXACT [OBOL:automatic] synonym: "lower extremity autopod connective tissue" EXACT [OBOL:automatic] synonym: "lower extremity autopod portion of connective tissue" EXACT [OBOL:automatic] synonym: "lower extremity autopod textus connectivus" EXACT [OBOL:automatic] synonym: "lower extremity distal free limb segment connective tissue" EXACT [OBOL:automatic] synonym: "lower extremity distal free limb segment portion of connective tissue" EXACT [OBOL:automatic] synonym: "lower extremity distal free limb segment textus connectivus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of autopod of hind limb" EXACT [OBOL:automatic] synonym: "portion of connective tissue of autopod of hindlimb" EXACT [OBOL:automatic] synonym: "portion of connective tissue of autopod of inferior member" EXACT [OBOL:automatic] synonym: "portion of connective tissue of autopod of lower extremity" EXACT [OBOL:automatic] synonym: "portion of connective tissue of distal free limb segment of hind limb" EXACT [OBOL:automatic] synonym: "portion of connective tissue of distal free limb segment of hindlimb" EXACT [OBOL:automatic] synonym: "portion of connective tissue of distal free limb segment of inferior member" EXACT [OBOL:automatic] synonym: "portion of connective tissue of distal free limb segment of lower extremity" EXACT [OBOL:automatic] synonym: "portion of connective tissue of foot" EXACT [OBOL:automatic] synonym: "portion of connective tissue of hind limb autopod" EXACT [OBOL:automatic] synonym: "portion of connective tissue of hind limb distal free limb segment" EXACT [OBOL:automatic] synonym: "portion of connective tissue of hindlimb autopod" EXACT [OBOL:automatic] synonym: "portion of connective tissue of hindlimb distal free limb segment" EXACT [OBOL:automatic] synonym: "portion of connective tissue of inferior member autopod" EXACT [OBOL:automatic] synonym: "portion of connective tissue of inferior member distal free limb segment" EXACT [OBOL:automatic] synonym: "portion of connective tissue of lower extremity autopod" EXACT [OBOL:automatic] synonym: "portion of connective tissue of lower extremity distal free limb segment" EXACT [OBOL:automatic] synonym: "portion of connective tissue of terminal segment of free lower limb" EXACT [OBOL:automatic] synonym: "terminal segment of free lower limb connective tissue" EXACT [OBOL:automatic] synonym: "terminal segment of free lower limb portion of connective tissue" EXACT [OBOL:automatic] synonym: "terminal segment of free lower limb textus connectivus" EXACT [OBOL:automatic] synonym: "textus connectivus of autopod of hind limb" EXACT [OBOL:automatic] synonym: "textus connectivus of autopod of hindlimb" EXACT [OBOL:automatic] synonym: "textus connectivus of autopod of inferior member" EXACT [OBOL:automatic] synonym: "textus connectivus of autopod of lower extremity" EXACT [OBOL:automatic] synonym: "textus connectivus of distal free limb segment of hind limb" EXACT [OBOL:automatic] synonym: "textus connectivus of distal free limb segment of hindlimb" EXACT [OBOL:automatic] synonym: "textus connectivus of distal free limb segment of inferior member" EXACT [OBOL:automatic] synonym: "textus connectivus of distal free limb segment of lower extremity" EXACT [OBOL:automatic] synonym: "textus connectivus of foot" EXACT [OBOL:automatic] synonym: "textus connectivus of hind limb autopod" EXACT [OBOL:automatic] synonym: "textus connectivus of hind limb distal free limb segment" EXACT [OBOL:automatic] synonym: "textus connectivus of hindlimb autopod" EXACT [OBOL:automatic] synonym: "textus connectivus of hindlimb distal free limb segment" EXACT [OBOL:automatic] synonym: "textus connectivus of inferior member autopod" EXACT [OBOL:automatic] synonym: "textus connectivus of inferior member distal free limb segment" EXACT [OBOL:automatic] synonym: "textus connectivus of lower extremity autopod" EXACT [OBOL:automatic] synonym: "textus connectivus of lower extremity distal free limb segment" EXACT [OBOL:automatic] synonym: "textus connectivus of terminal segment of free lower limb" EXACT [OBOL:automatic] xref: MA:0000644 is_a: UBERON:0003589 ! implied link automatically realized ! hindlimb connective tissue relationship: part_of UBERON:0002387 intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0002387 ! foot [Term] id: UBERON:0003596 name: ankle connective tissue def: "A portion of connective tissue that is part of an ankle [Obol]." [OBOL:automatic] synonym: "ankle portion of connective tissue" EXACT [OBOL:automatic] synonym: "ankle textus connectivus" EXACT [OBOL:automatic] synonym: "connective tissue of ankle" EXACT [OBOL:automatic] synonym: "portion of connective tissue of ankle" EXACT [OBOL:automatic] synonym: "textus connectivus of ankle" EXACT [OBOL:automatic] xref: MA:0000639 is_a: UBERON:0003589 ! implied link automatically realized ! hindlimb connective tissue relationship: part_of UBERON:0002388 intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0002388 ! ankle [Term] id: UBERON:0003597 name: hand digit connective tissue def: "A portion of connective tissue that is part of a finger [Obol]." [OBOL:automatic] synonym: "connective tissue of digit of hand" EXACT [OBOL:automatic] synonym: "connective tissue of digit of terminal segment of free upper limb" EXACT [OBOL:automatic] synonym: "connective tissue of digitus manus" EXACT [OBOL:automatic] synonym: "connective tissue of finger" EXACT [OBOL:automatic] synonym: "connective tissue of hand digit" EXACT [OBOL:automatic] synonym: "connective tissue of terminal segment of free upper limb digit" EXACT [OBOL:automatic] synonym: "digit of hand connective tissue" EXACT [OBOL:automatic] synonym: "digit of hand portion of connective tissue" EXACT [OBOL:automatic] synonym: "digit of hand textus connectivus" EXACT [OBOL:automatic] synonym: "digit of terminal segment of free upper limb connective tissue" EXACT [OBOL:automatic] synonym: "digit of terminal segment of free upper limb portion of connective tissue" EXACT [OBOL:automatic] synonym: "digit of terminal segment of free upper limb textus connectivus" EXACT [OBOL:automatic] synonym: "digitus manus connective tissue" EXACT [OBOL:automatic] synonym: "digitus manus portion of connective tissue" EXACT [OBOL:automatic] synonym: "digitus manus textus connectivus" EXACT [OBOL:automatic] synonym: "finger connective tissue" EXACT [OBOL:automatic] synonym: "finger portion of connective tissue" EXACT [OBOL:automatic] synonym: "finger textus connectivus" EXACT [OBOL:automatic] synonym: "hand digit portion of connective tissue" EXACT [OBOL:automatic] synonym: "hand digit textus connectivus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of digit of hand" EXACT [OBOL:automatic] synonym: "portion of connective tissue of digit of terminal segment of free upper limb" EXACT [OBOL:automatic] synonym: "portion of connective tissue of digitus manus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of finger" EXACT [OBOL:automatic] synonym: "portion of connective tissue of hand digit" EXACT [OBOL:automatic] synonym: "portion of connective tissue of terminal segment of free upper limb digit" EXACT [OBOL:automatic] synonym: "terminal segment of free upper limb digit connective tissue" EXACT [OBOL:automatic] synonym: "terminal segment of free upper limb digit portion of connective tissue" EXACT [OBOL:automatic] synonym: "terminal segment of free upper limb digit textus connectivus" EXACT [OBOL:automatic] synonym: "textus connectivus of digit of hand" EXACT [OBOL:automatic] synonym: "textus connectivus of digit of terminal segment of free upper limb" EXACT [OBOL:automatic] synonym: "textus connectivus of digitus manus" EXACT [OBOL:automatic] synonym: "textus connectivus of finger" EXACT [OBOL:automatic] synonym: "textus connectivus of hand digit" EXACT [OBOL:automatic] synonym: "textus connectivus of terminal segment of free upper limb digit" EXACT [OBOL:automatic] xref: MA:0000623 is_a: UBERON:0003598 ! implied link automatically realized ! hand connective tissue relationship: part_of UBERON:0002389 intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0002389 ! hand digit [Term] id: UBERON:0003598 name: hand connective tissue def: "A portion of connective tissue that is part of a hand [Obol]." [OBOL:automatic] synonym: "arm autopod connective tissue" EXACT [OBOL:automatic] synonym: "arm autopod portion of connective tissue" EXACT [OBOL:automatic] synonym: "arm autopod textus connectivus" EXACT [OBOL:automatic] synonym: "arm distal free limb segment connective tissue" EXACT [OBOL:automatic] synonym: "arm distal free limb segment portion of connective tissue" EXACT [OBOL:automatic] synonym: "arm distal free limb segment textus connectivus" EXACT [OBOL:automatic] synonym: "autopod of arm connective tissue" EXACT [OBOL:automatic] synonym: "autopod of arm portion of connective tissue" EXACT [OBOL:automatic] synonym: "autopod of arm textus connectivus" EXACT [OBOL:automatic] synonym: "autopod of brachial region connective tissue" EXACT [OBOL:automatic] synonym: "autopod of brachial region portion of connective tissue" EXACT [OBOL:automatic] synonym: "autopod of brachial region textus connectivus" EXACT [OBOL:automatic] synonym: "autopod of proximal segment of free upper limb connective tissue" EXACT [OBOL:automatic] synonym: "autopod of proximal segment of free upper limb portion of connective tissue" EXACT [OBOL:automatic] synonym: "autopod of proximal segment of free upper limb textus connectivus" EXACT [OBOL:automatic] synonym: "brachial region autopod connective tissue" EXACT [OBOL:automatic] synonym: "brachial region autopod portion of connective tissue" EXACT [OBOL:automatic] synonym: "brachial region autopod textus connectivus" EXACT [OBOL:automatic] synonym: "brachial region distal free limb segment connective tissue" EXACT [OBOL:automatic] synonym: "brachial region distal free limb segment portion of connective tissue" EXACT [OBOL:automatic] synonym: "brachial region distal free limb segment textus connectivus" EXACT [OBOL:automatic] synonym: "connective tissue of arm autopod" EXACT [OBOL:automatic] synonym: "connective tissue of arm distal free limb segment" EXACT [OBOL:automatic] synonym: "connective tissue of autopod of arm" EXACT [OBOL:automatic] synonym: "connective tissue of autopod of brachial region" EXACT [OBOL:automatic] synonym: "connective tissue of autopod of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "connective tissue of brachial region autopod" EXACT [OBOL:automatic] synonym: "connective tissue of brachial region distal free limb segment" EXACT [OBOL:automatic] synonym: "connective tissue of distal free limb segment of arm" EXACT [OBOL:automatic] synonym: "connective tissue of distal free limb segment of brachial region" EXACT [OBOL:automatic] synonym: "connective tissue of distal free limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "connective tissue of hand" EXACT [OBOL:automatic] synonym: "connective tissue of proximal segment of free upper limb autopod" EXACT [OBOL:automatic] synonym: "connective tissue of proximal segment of free upper limb distal free limb segment" EXACT [OBOL:automatic] synonym: "connective tissue of terminal segment of free upper limb" EXACT [OBOL:automatic] synonym: "distal free limb segment of arm connective tissue" EXACT [OBOL:automatic] synonym: "distal free limb segment of arm portion of connective tissue" EXACT [OBOL:automatic] synonym: "distal free limb segment of arm textus connectivus" EXACT [OBOL:automatic] synonym: "distal free limb segment of brachial region connective tissue" EXACT [OBOL:automatic] synonym: "distal free limb segment of brachial region portion of connective tissue" EXACT [OBOL:automatic] synonym: "distal free limb segment of brachial region textus connectivus" EXACT [OBOL:automatic] synonym: "distal free limb segment of proximal segment of free upper limb connective tissue" EXACT [OBOL:automatic] synonym: "distal free limb segment of proximal segment of free upper limb portion of connective tissue" EXACT [OBOL:automatic] synonym: "distal free limb segment of proximal segment of free upper limb textus connectivus" EXACT [OBOL:automatic] synonym: "hand portion of connective tissue" EXACT [OBOL:automatic] synonym: "hand textus connectivus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of arm autopod" EXACT [OBOL:automatic] synonym: "portion of connective tissue of arm distal free limb segment" EXACT [OBOL:automatic] synonym: "portion of connective tissue of autopod of arm" EXACT [OBOL:automatic] synonym: "portion of connective tissue of autopod of brachial region" EXACT [OBOL:automatic] synonym: "portion of connective tissue of autopod of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "portion of connective tissue of brachial region autopod" EXACT [OBOL:automatic] synonym: "portion of connective tissue of brachial region distal free limb segment" EXACT [OBOL:automatic] synonym: "portion of connective tissue of distal free limb segment of arm" EXACT [OBOL:automatic] synonym: "portion of connective tissue of distal free limb segment of brachial region" EXACT [OBOL:automatic] synonym: "portion of connective tissue of distal free limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "portion of connective tissue of hand" EXACT [OBOL:automatic] synonym: "portion of connective tissue of proximal segment of free upper limb autopod" EXACT [OBOL:automatic] synonym: "portion of connective tissue of proximal segment of free upper limb distal free limb segment" EXACT [OBOL:automatic] synonym: "portion of connective tissue of terminal segment of free upper limb" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb autopod connective tissue" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb autopod portion of connective tissue" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb autopod textus connectivus" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb distal free limb segment connective tissue" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb distal free limb segment portion of connective tissue" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb distal free limb segment textus connectivus" EXACT [OBOL:automatic] synonym: "terminal segment of free upper limb connective tissue" EXACT [OBOL:automatic] synonym: "terminal segment of free upper limb portion of connective tissue" EXACT [OBOL:automatic] synonym: "terminal segment of free upper limb textus connectivus" EXACT [OBOL:automatic] synonym: "textus connectivus of arm autopod" EXACT [OBOL:automatic] synonym: "textus connectivus of arm distal free limb segment" EXACT [OBOL:automatic] synonym: "textus connectivus of autopod of arm" EXACT [OBOL:automatic] synonym: "textus connectivus of autopod of brachial region" EXACT [OBOL:automatic] synonym: "textus connectivus of autopod of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "textus connectivus of brachial region autopod" EXACT [OBOL:automatic] synonym: "textus connectivus of brachial region distal free limb segment" EXACT [OBOL:automatic] synonym: "textus connectivus of distal free limb segment of arm" EXACT [OBOL:automatic] synonym: "textus connectivus of distal free limb segment of brachial region" EXACT [OBOL:automatic] synonym: "textus connectivus of distal free limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "textus connectivus of hand" EXACT [OBOL:automatic] synonym: "textus connectivus of proximal segment of free upper limb autopod" EXACT [OBOL:automatic] synonym: "textus connectivus of proximal segment of free upper limb distal free limb segment" EXACT [OBOL:automatic] synonym: "textus connectivus of terminal segment of free upper limb" EXACT [OBOL:automatic] xref: MA:0000620 is_a: UBERON:0003588 ! implied link automatically realized ! forelimb connective tissue relationship: part_of UBERON:0002398 intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0002398 ! hand [Term] id: UBERON:0003599 name: tail connective tissue def: "A portion of connective tissue that is part of a tail [Obol]." [OBOL:automatic] synonym: "connective tissue of post-vent region" EXACT [OBOL:automatic] synonym: "connective tissue of tail" EXACT [OBOL:automatic] synonym: "portion of connective tissue of post-vent region" EXACT [OBOL:automatic] synonym: "portion of connective tissue of tail" EXACT [OBOL:automatic] synonym: "post-vent region connective tissue" EXACT [OBOL:automatic] synonym: "post-vent region portion of connective tissue" EXACT [OBOL:automatic] synonym: "post-vent region textus connectivus" EXACT [OBOL:automatic] synonym: "tail portion of connective tissue" EXACT [OBOL:automatic] synonym: "tail textus connectivus" EXACT [OBOL:automatic] synonym: "textus connectivus of post-vent region" EXACT [OBOL:automatic] synonym: "textus connectivus of tail" EXACT [OBOL:automatic] xref: MA:0000697 is_a: UBERON:0002384 ! implied link automatically realized ! connective tissue relationship: part_of UBERON:0007812 intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0007812 ! post-anal tail [Term] id: UBERON:0003601 name: neck cartilage def: "A cartilage that is part of a neck [Obol]." [OBOL:automatic] synonym: "cartilage of neck" EXACT [OBOL:automatic] synonym: "cartilage of neck (volume)" EXACT [OBOL:automatic] synonym: "neck (volume) cartilage" EXACT [OBOL:automatic] xref: MA:0000586 is_a: UBERON:0002418 ! implied link automatically realized ! cartilage tissue is_a: UBERON:0003568 ! implied link automatically realized ! neck connective tissue relationship: part_of UBERON:0000974 intersection_of: UBERON:0002418 ! cartilage tissue intersection_of: part_of UBERON:0000974 ! neck [Term] id: UBERON:0003603 name: lower respiratory tract cartilage def: "A cartilage that is part of a lower respiratory tract [Obol]." [OBOL:automatic] synonym: "cartilage of lower respiratory tract" EXACT [OBOL:automatic] xref: MA:0001819 xref: ncithesaurus:Lower_Respiratory_Tract_Cartilage is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003406 ! implied link automatically realized ! cartilage of respiratory system is_a: UBERON:0003580 ! implied link automatically realized ! lower respiratory tract connective tissue relationship: part_of UBERON:0001558 intersection_of: UBERON:0002418 ! cartilage tissue intersection_of: part_of UBERON:0001558 ! lower respiratory tract [Term] id: UBERON:0003604 name: trachea cartilage def: "The cartilages of the trachea (or tracheal rings) vary from sixteen to twenty in number: each forms an imperfect ring, which occupies the anterior two-thirds or so of the circumference of the trachea, being deficient behind, where the tube is completed by fibrous tissue and unstriped muscular fibers." [Wikipedia:Tracheal_rings] synonym: "cartilage of the trachea" RELATED [Wikipedia:Tracheal_rings] synonym: "cartilage of trachea" EXACT [OBOL:automatic] synonym: "cartilage of windpipe" EXACT [OBOL:automatic] synonym: "cartilaginous ring of trachea" EXACT [EMAPA:18699] synonym: "cartilaginous trachea cartilage" EXACT [OBOL:automatic] synonym: "cartilago trachealis" EXACT [FMA:7434] synonym: "ring of the trachea" RELATED [Wikipedia:Tracheal_rings] synonym: "tracheal cartilage" EXACT [FMA:7434] synonym: "tracheal ring" RELATED [Wikipedia:Tracheal_rings] synonym: "windpipe cartilage" EXACT [OBOL:automatic] xref: EMAPA:18699 xref: FMA:7434 xref: MA:0001857 xref: ncithesaurus:Trachea_Cartilage xref: SCTID:278979006 is_a: UBERON:0003571 ! implied link automatically realized ! trachea connective tissue is_a: UBERON:0003603 ! implied link automatically realized ! lower respiratory tract cartilage relationship: part_of UBERON:0003126 intersection_of: UBERON:0002418 ! cartilage tissue intersection_of: part_of UBERON:0003126 ! trachea relationship: develops_from UBERON:0007267 ! trachea pre-cartilage rings [Term] id: UBERON:0003605 name: eye skin gland def: "A skin gland that is part of a camera-type eye [Obol]." [OBOL:automatic] subset: organ_slim synonym: "camera-type eye skin gland" EXACT [OBOL:automatic] synonym: "camera-type eye skin glands" EXACT [OBOL:automatic] synonym: "camera-type eye skin glands set" EXACT [OBOL:automatic] synonym: "skin gland of camera-type eye" EXACT [OBOL:automatic] synonym: "skin gland of vertebrate eye" EXACT [OBOL:automatic] synonym: "skin glands of camera-type eye" EXACT [OBOL:automatic] synonym: "skin glands of vertebrate eye" EXACT [OBOL:automatic] synonym: "skin glands set of camera-type eye" EXACT [OBOL:automatic] synonym: "skin glands set of vertebrate eye" EXACT [OBOL:automatic] synonym: "vertebrate eye skin gland" EXACT [OBOL:automatic] synonym: "vertebrate eye skin glands" EXACT [OBOL:automatic] synonym: "vertebrate eye skin glands set" EXACT [OBOL:automatic] xref: MA:0002451 is_a: UBERON:0002419 ! implied link automatically realized ! skin gland is_a: UBERON:0004859 ! implied link automatically realized ! eye gland relationship: part_of UBERON:0000019 intersection_of: UBERON:0002419 ! skin gland intersection_of: part_of UBERON:0000019 ! camera-type eye [Term] id: UBERON:0003606 name: limb long bone def: "A long bone that is part of a limb [Obol]." [OBOL:automatic] synonym: "long bone of limb" EXACT [OBOL:automatic] xref: MA:0000298 is_a: UBERON:0002428 ! implied link automatically realized ! limb bone is_a: UBERON:0002495 ! implied link automatically realized ! long bone relationship: part_of UBERON:0002101 intersection_of: UBERON:0002495 ! long bone intersection_of: part_of UBERON:0002101 ! limb [Term] id: UBERON:0003607 name: forelimb long bone def: "A long bone that is part of a forelimb [Obol]." [OBOL:automatic] synonym: "anteriormost limb long bone" EXACT [OBOL:automatic] synonym: "fore limb long bone" EXACT [OBOL:automatic] synonym: "long bone of anteriormost limb" EXACT [OBOL:automatic] synonym: "long bone of fore limb" EXACT [OBOL:automatic] synonym: "long bone of forelimb" EXACT [OBOL:automatic] synonym: "long bone of superior member" EXACT [OBOL:automatic] synonym: "long bone of upper extremity" EXACT [OBOL:automatic] synonym: "superior member long bone" EXACT [OBOL:automatic] synonym: "upper extremity long bone" EXACT [OBOL:automatic] xref: MA:0000299 is_a: UBERON:0003606 ! implied link automatically realized ! limb long bone is_a: UBERON:0008962 ! implied link automatically realized ! forelimb bone relationship: part_of UBERON:0002102 intersection_of: UBERON:0002495 ! long bone intersection_of: part_of UBERON:0002102 ! forelimb [Term] id: UBERON:0003608 name: hindlimb long bone def: "A long bone that is part of a hindlimb [Obol]." [OBOL:automatic] synonym: "hind limb long bone" EXACT [OBOL:automatic] synonym: "inferior member long bone" EXACT [OBOL:automatic] synonym: "long bone of hind limb" EXACT [OBOL:automatic] synonym: "long bone of hindlimb" EXACT [OBOL:automatic] synonym: "long bone of inferior member" EXACT [OBOL:automatic] synonym: "long bone of lower extremity" EXACT [OBOL:automatic] synonym: "lower extremity long bone" EXACT [OBOL:automatic] xref: MA:0000300 is_a: UBERON:0003464 ! implied link automatically realized ! hindlimb bone is_a: UBERON:0003606 ! implied link automatically realized ! limb long bone relationship: part_of UBERON:0002103 intersection_of: UBERON:0002495 ! long bone intersection_of: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0003609 name: aorta elastic tissue def: "the dense connective tissue which contains predominantly elastic fibers and is found in the tunica media of the aorta wall." [MP:0009862] synonym: "adult aorta elastic connective tissue" EXACT [OBOL:automatic] synonym: "adult aorta elastic tissue" EXACT [OBOL:automatic] synonym: "adult aorta textus connectivus elasticus" EXACT [OBOL:automatic] synonym: "aorta elastic connective tissue" EXACT [OBOL:automatic] synonym: "aorta textus connectivus elasticus" EXACT [OBOL:automatic] synonym: "dorsal aorta elastic connective tissue" EXACT [OBOL:automatic] synonym: "dorsal aorta elastic tissue" EXACT [OBOL:automatic] synonym: "dorsal aorta textus connectivus elasticus" EXACT [OBOL:automatic] synonym: "elastic connective tissue of adult aorta" EXACT [OBOL:automatic] synonym: "elastic connective tissue of aorta" EXACT [OBOL:automatic] synonym: "elastic connective tissue of dorsal aorta" EXACT [OBOL:automatic] synonym: "elastic connective tissue of trunk of aortic tree" EXACT [OBOL:automatic] synonym: "elastic tissue of adult aorta" EXACT [OBOL:automatic] synonym: "elastic tissue of aorta" EXACT [OBOL:automatic] synonym: "elastic tissue of dorsal aorta" EXACT [OBOL:automatic] synonym: "elastic tissue of trunk of aortic tree" EXACT [OBOL:automatic] synonym: "textus connectivus elasticus of adult aorta" EXACT [OBOL:automatic] synonym: "textus connectivus elasticus of aorta" EXACT [OBOL:automatic] synonym: "textus connectivus elasticus of dorsal aorta" EXACT [OBOL:automatic] synonym: "textus connectivus elasticus of trunk of aortic tree" EXACT [OBOL:automatic] synonym: "trunk of aortic tree elastic connective tissue" EXACT [OBOL:automatic] synonym: "trunk of aortic tree elastic tissue" EXACT [OBOL:automatic] synonym: "trunk of aortic tree textus connectivus elasticus" EXACT [OBOL:automatic] xref: MA:0002859 is_a: UBERON:0003614 ! implied link automatically realized ! blood vessel elastic tissue relationship: part_of UBERON:0000947 intersection_of: UBERON:0002521 ! elastic tissue intersection_of: part_of UBERON:0000947 ! aorta [Term] id: UBERON:0003610 name: heart elastic tissue def: "the type of heart connective tissue found in the endocardial layer that consists mainly of elastic fibers." [MP:0009863] synonym: "elastic connective tissue of heart" EXACT [OBOL:automatic] synonym: "elastic tissue of heart" EXACT [OBOL:automatic] synonym: "heart elastic connective tissue" EXACT [OBOL:automatic] synonym: "heart textus connectivus elasticus" EXACT [OBOL:automatic] synonym: "textus connectivus elasticus of heart" EXACT [OBOL:automatic] xref: MA:0002858 is_a: UBERON:0003613 ! implied link automatically realized ! cardiovascular system elastic tissue is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0000948 intersection_of: UBERON:0002521 ! elastic tissue intersection_of: part_of UBERON:0000948 ! heart [Term] id: UBERON:0003611 name: respiratory system elastic tissue def: "An elastic tissue that is part of a respiratory system [Obol]." [OBOL:automatic] synonym: "apparatus respiratorius elastic connective tissue" EXACT [OBOL:automatic] synonym: "apparatus respiratorius elastic tissue" EXACT [OBOL:automatic] synonym: "apparatus respiratorius textus connectivus elasticus" EXACT [OBOL:automatic] synonym: "elastic connective tissue of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "elastic connective tissue of respiratory system" EXACT [OBOL:automatic] synonym: "elastic tissue of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "elastic tissue of respiratory system" EXACT [OBOL:automatic] synonym: "respiratory system elastic connective tissue" EXACT [OBOL:automatic] synonym: "respiratory system textus connectivus elasticus" EXACT [OBOL:automatic] synonym: "textus connectivus elasticus of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "textus connectivus elasticus of respiratory system" EXACT [OBOL:automatic] xref: MA:0001820 is_a: UBERON:0002521 ! implied link automatically realized ! elastic tissue is_a: UBERON:0003570 ! implied link automatically realized ! respiratory system connective tissue relationship: part_of UBERON:0001004 intersection_of: UBERON:0002521 ! elastic tissue intersection_of: part_of UBERON:0001004 ! respiratory system relationship: part_of UBERON:0004777 ! respiratory system submucosa [Term] id: UBERON:0003613 name: cardiovascular system elastic tissue def: "An elastic tissue that is part of a circulatory system [Obol]." [OBOL:automatic] synonym: "cardiovascular system elastic connective tissue" EXACT [OBOL:automatic] synonym: "cardiovascular system textus connectivus elasticus" EXACT [OBOL:automatic] synonym: "circulatory system elastic connective tissue" EXACT [OBOL:automatic] synonym: "circulatory system elastic tissue" EXACT [OBOL:automatic] synonym: "circulatory system textus connectivus elasticus" EXACT [OBOL:automatic] synonym: "elastic connective tissue of cardiovascular system" EXACT [OBOL:automatic] synonym: "elastic connective tissue of circulatory system" EXACT [OBOL:automatic] synonym: "elastic tissue of cardiovascular system" EXACT [OBOL:automatic] synonym: "elastic tissue of circulatory system" EXACT [OBOL:automatic] synonym: "textus connectivus elasticus of cardiovascular system" EXACT [OBOL:automatic] synonym: "textus connectivus elasticus of circulatory system" EXACT [OBOL:automatic] xref: MA:0002857 is_a: UBERON:0002521 ! implied link automatically realized ! elastic tissue relationship: part_of UBERON:0001009 intersection_of: UBERON:0002521 ! elastic tissue intersection_of: part_of UBERON:0001009 ! circulatory system relationship: part_of UBERON:0004535 ! cardiovascular system [Term] id: UBERON:0003614 name: blood vessel elastic tissue def: "An elastic tissue that is part of a blood vessel [Obol]." [OBOL:automatic] synonym: "blood vessel elastic connective tissue" EXACT [OBOL:automatic] synonym: "blood vessel textus connectivus elasticus" EXACT [OBOL:automatic] synonym: "elastic connective tissue of blood vessel" EXACT [OBOL:automatic] synonym: "elastic tissue of blood vessel" EXACT [OBOL:automatic] synonym: "textus connectivus elasticus of blood vessel" EXACT [OBOL:automatic] xref: MA:0002856 is_a: UBERON:0003613 ! implied link automatically realized ! cardiovascular system elastic tissue is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001981 intersection_of: UBERON:0002521 ! elastic tissue intersection_of: part_of UBERON:0001981 ! blood vessel [Term] id: UBERON:0003615 name: lung elastic tissue def: "An elastic tissue that is part of a lung [Obol]." [OBOL:automatic] synonym: "elastic connective tissue of lung" EXACT [OBOL:automatic] synonym: "elastic tissue of lung" EXACT [OBOL:automatic] synonym: "lung elastic connective tissue" EXACT [OBOL:automatic] synonym: "lung textus connectivus elasticus" EXACT [OBOL:automatic] synonym: "textus connectivus elasticus of lung" EXACT [OBOL:automatic] xref: MA:0002860 is_a: UBERON:0000114 ! implied link automatically realized ! lung connective tissue is_a: UBERON:0003611 ! implied link automatically realized ! respiratory system elastic tissue relationship: part_of UBERON:0002048 intersection_of: UBERON:0002521 ! elastic tissue intersection_of: part_of UBERON:0002048 ! lung [Term] id: UBERON:0003616 name: bronchus elastic tissue def: "An elastic tissue that is part of a bronchus [Obol]." [OBOL:automatic] synonym: "bronchi elastic connective tissue" EXACT [OBOL:automatic] synonym: "bronchi elastic tissue" EXACT [OBOL:automatic] synonym: "bronchi textus connectivus elasticus" EXACT [OBOL:automatic] synonym: "bronchial trunk elastic connective tissue" EXACT [OBOL:automatic] synonym: "bronchial trunk elastic tissue" EXACT [OBOL:automatic] synonym: "bronchial trunk textus connectivus elasticus" EXACT [OBOL:automatic] synonym: "bronchus elastic connective tissue" EXACT [OBOL:automatic] synonym: "bronchus textus connectivus elasticus" EXACT [OBOL:automatic] synonym: "elastic connective tissue of bronchi" EXACT [OBOL:automatic] synonym: "elastic connective tissue of bronchial trunk" EXACT [OBOL:automatic] synonym: "elastic connective tissue of bronchus" EXACT [OBOL:automatic] synonym: "elastic tissue of bronchi" EXACT [OBOL:automatic] synonym: "elastic tissue of bronchial trunk" EXACT [OBOL:automatic] synonym: "elastic tissue of bronchus" EXACT [OBOL:automatic] synonym: "textus connectivus elasticus of bronchi" EXACT [OBOL:automatic] synonym: "textus connectivus elasticus of bronchial trunk" EXACT [OBOL:automatic] synonym: "textus connectivus elasticus of bronchus" EXACT [OBOL:automatic] xref: MA:0001838 xref: ncithesaurus:Bronchus_Elastic_Tissue is_a: UBERON:0003592 ! implied link automatically realized ! bronchus connective tissue is_a: UBERON:0003611 ! implied link automatically realized ! respiratory system elastic tissue relationship: part_of UBERON:0002185 intersection_of: UBERON:0002521 ! elastic tissue intersection_of: part_of UBERON:0002185 ! bronchus relationship: part_of UBERON:0001957 ! submucosa of bronchus [Term] id: UBERON:0003617 name: trachea elastic tissue def: "An elastic tissue that is part of a trachea [Obol]." [OBOL:automatic] synonym: "cartilaginous trachea elastic connective tissue" EXACT [OBOL:automatic] synonym: "cartilaginous trachea elastic tissue" EXACT [OBOL:automatic] synonym: "cartilaginous trachea textus connectivus elasticus" EXACT [OBOL:automatic] synonym: "elastic connective tissue of cartilaginous trachea" EXACT [OBOL:automatic] synonym: "elastic connective tissue of vertebrate trachea" EXACT [OBOL:automatic] synonym: "elastic connective tissue of windpipe" EXACT [OBOL:automatic] synonym: "elastic tissue of cartilaginous trachea" EXACT [OBOL:automatic] synonym: "elastic tissue of vertebrate trachea" EXACT [OBOL:automatic] synonym: "elastic tissue of windpipe" EXACT [OBOL:automatic] synonym: "textus connectivus elasticus of cartilaginous trachea" EXACT [OBOL:automatic] synonym: "textus connectivus elasticus of vertebrate trachea" EXACT [OBOL:automatic] synonym: "textus connectivus elasticus of windpipe" EXACT [OBOL:automatic] synonym: "vertebrate trachea elastic connective tissue" EXACT [OBOL:automatic] synonym: "vertebrate trachea elastic tissue" EXACT [OBOL:automatic] synonym: "vertebrate trachea textus connectivus elasticus" EXACT [OBOL:automatic] synonym: "windpipe elastic connective tissue" EXACT [OBOL:automatic] synonym: "windpipe elastic tissue" EXACT [OBOL:automatic] synonym: "windpipe textus connectivus elasticus" EXACT [OBOL:automatic] xref: MA:0001861 is_a: UBERON:0003571 ! implied link automatically realized ! trachea connective tissue is_a: UBERON:0003611 ! implied link automatically realized ! respiratory system elastic tissue relationship: part_of UBERON:0003126 intersection_of: UBERON:0002521 ! elastic tissue intersection_of: part_of UBERON:0003126 ! trachea relationship: part_of UBERON:0002202 ! submucosa of trachea [Term] id: UBERON:0003618 name: aorta tunica media def: "the middle layer of the aorta wall, containing the smooth muscle layer and elastic fibers." [MP:0009873] synonym: "adult aorta tunica media" EXACT [OBOL:automatic] synonym: "dorsal aorta tunica media" EXACT [OBOL:automatic] synonym: "trunk of aortic tree tunica media" EXACT [OBOL:automatic] synonym: "tunica media of adult aorta" EXACT [OBOL:automatic] synonym: "tunica media of aorta" EXACT [OBOL:automatic] synonym: "tunica media of dorsal aorta" EXACT [OBOL:automatic] synonym: "tunica media of trunk of aortic tree" EXACT [OBOL:automatic] xref: FMA:74433 xref: MA:0002903 xref: SCTID:48467007 is_a: UBERON:0007239 ! implied link automatically realized ! tunica media of artery relationship: part_of UBERON:0000947 intersection_of: UBERON:0002522 ! tunica media intersection_of: part_of UBERON:0000947 ! aorta relationship: part_of UBERON:0004663 ! aorta wall [Term] id: UBERON:0003619 name: aorta tunica intima def: "the innermost layer of the aorta, containing the endothelium and an inner elastic membrane." [MP:0009872] synonym: "adult aorta tunica intima" EXACT [OBOL:automatic] synonym: "dorsal aorta tunica intima" EXACT [OBOL:automatic] synonym: "trunk of aortic tree tunica intima" EXACT [OBOL:automatic] synonym: "tunica intima of adult aorta" EXACT [OBOL:automatic] synonym: "tunica intima of aorta" EXACT [OBOL:automatic] synonym: "tunica intima of dorsal aorta" EXACT [OBOL:automatic] synonym: "tunica intima of trunk of aortic tree" EXACT [OBOL:automatic] xref: FMA:74419 xref: MA:0002904 xref: SCTID:362031007 is_a: UBERON:0005740 ! implied link automatically realized ! tunica intima of artery relationship: part_of UBERON:0000947 intersection_of: UBERON:0002523 ! tunica intima intersection_of: part_of UBERON:0000947 ! aorta relationship: part_of UBERON:0004663 ! aorta wall [Term] id: UBERON:0003620 name: hand digit 1 phalanx def: "A phalanx that is part of a hand digit 1 [Obol]." [OBOL:automatic] synonym: "digit long bone of first digit of hand" EXACT [OBOL:automatic] synonym: "digit long bone of hand digit 1" EXACT [OBOL:automatic] synonym: "digit long bone of Pollex ; Digitus primus [ I ]" EXACT [OBOL:automatic] synonym: "digit long bone of thumb" EXACT [OBOL:automatic] synonym: "first digit of hand digit long bone" EXACT [OBOL:automatic] synonym: "first digit of hand long bone of digit" EXACT [OBOL:automatic] synonym: "first digit of hand phalanx" EXACT [OBOL:automatic] synonym: "hand digit 1 digit long bone" EXACT [OBOL:automatic] synonym: "hand digit 1 long bone of digit" EXACT [OBOL:automatic] synonym: "long bone of digit of first digit of hand" EXACT [OBOL:automatic] synonym: "long bone of digit of hand digit 1" EXACT [OBOL:automatic] synonym: "long bone of digit of Pollex ; Digitus primus [ I ]" EXACT [OBOL:automatic] synonym: "long bone of digit of thumb" EXACT [OBOL:automatic] synonym: "phalanx of first digit of hand" EXACT [OBOL:automatic] synonym: "phalanx of hand digit 1" EXACT [OBOL:automatic] synonym: "phalanx of Pollex ; Digitus primus [ I ]" EXACT [OBOL:automatic] synonym: "phalanx of thumb" EXACT [OBOL:automatic] synonym: "Pollex ; Digitus primus [ I ] digit long bone" EXACT [OBOL:automatic] synonym: "Pollex ; Digitus primus [ I ] long bone of digit" EXACT [OBOL:automatic] synonym: "Pollex ; Digitus primus [ I ] phalanx" EXACT [OBOL:automatic] synonym: "thumb digit long bone" EXACT [OBOL:automatic] synonym: "thumb long bone of digit" EXACT [OBOL:automatic] synonym: "thumb phalanx" EXACT [OBOL:automatic] xref: FMA:35477 xref: MA:0001389 xref: ncithesaurus:Hand_Digit_1_Phalanx xref: SCTID:181975002 is_a: UBERON:0001436 ! implied link automatically realized ! phalanx of finger relationship: part_of UBERON:0001463 intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0001463 ! hand digit 1 [Term] id: UBERON:0003622 name: hand digit 2 def: "2nd digit of the hand in mouse and human and homologs." [Wikipedia:Index_finger] comment: comment: This class represents all instances of the 2nd digit of the hand in human and mouse, and all homologues of this digit in other vertebrates. See http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553264/ synonym: "2nd digit of hand" EXACT [] synonym: "2nd finger" EXACT [] synonym: "digit 2 of fore-paw" EXACT [EMAPA:17432] synonym: "finger 2" EXACT [EHDAA2:0000517] synonym: "index finger" NARROW [] synonym: "second digit of hand" EXACT [FMA:24946] synonym: "second finger" EXACT [] xref: EHDAA2:0000517 xref: EMAPA:17432 xref: FMA:24946 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d5/Index_finger.JPG/200px-Index_finger.JPG xref: MA:0000455 xref: ncithesaurus:Hand_Digit_2 is_a: UBERON:0002389 ! hand digit is_a: UBERON:0006049 ! implied link automatically realized ! digit 2 relationship: part_of UBERON:0002398 intersection_of: UBERON:0006049 ! digit 2 intersection_of: part_of UBERON:0002398 ! hand [Term] id: UBERON:0003623 name: hand digit 3 def: "3rd digit of the hand in mouse and human and homologs." [Wikipedia:Middle_finger] comment: comment: This class represents all instances of the 3rd digit of the hand in human and mouse, and all homologues of this digit in other vertebrates. See http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553264/ synonym: "3rd digit of hand" EXACT [] synonym: "3rd finger" EXACT [] synonym: "digit 3 of fore-paw" EXACT [EMAPA:17435] synonym: "finger 3" EXACT [EHDAA2:0000523] synonym: "middle finger" NARROW [] synonym: "third digit of hand" EXACT [FMA:24947] synonym: "third finger" EXACT [] xref: EHDAA2:0000523 xref: EMAPA:17435 xref: FMA:24947 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fd/Middle_finger.jpg/200px-Middle_finger.jpg xref: MA:0000456 xref: ncithesaurus:Hand_Digit_3 is_a: UBERON:0002389 ! hand digit is_a: UBERON:0006050 ! implied link automatically realized ! digit 3 relationship: part_of UBERON:0002398 intersection_of: UBERON:0006050 ! digit 3 intersection_of: part_of UBERON:0002398 ! hand [Term] id: UBERON:0003624 name: hand digit 4 def: "4th digit of the hand in mouse and human and homologs." [Wikipedia:Ring_finger] comment: comment: This class represents all instances of the 4th digit of the hand in human and mouse, and all homologues of this digit in other vertebrates. See http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553264/ synonym: "4th digit of hand" EXACT [] synonym: "4th finger" EXACT [] synonym: "digit 4 of fore-paw" EXACT [EMAPA:17438] synonym: "finger 4" EXACT [EHDAA2:0000529] synonym: "fourth digit of hand" EXACT [FMA:24948] synonym: "fourth finger" EXACT [] synonym: "ring finger" NARROW [] xref: EHDAA2:0000529 xref: EMAPA:17438 xref: FMA:24948 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/14/Ring_finger.JPG/200px-Ring_finger.JPG xref: MA:0000457 xref: ncithesaurus:Hand_Digit_4 is_a: UBERON:0002389 ! hand digit is_a: UBERON:0006051 ! implied link automatically realized ! digit 4 relationship: part_of UBERON:0002398 intersection_of: UBERON:0006051 ! digit 4 intersection_of: part_of UBERON:0002398 ! hand [Term] id: UBERON:0003625 name: hand digit 5 def: "5th digit of the hand in mouse and human and homologs." [Wikipedia:Little_finger] comment: comment: This class represents all instances of the 5th digit of the hand in human and mouse, and all homologues of this digit in other vertebrates. See http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553264/ synonym: "5th digit of hand" EXACT [] synonym: "5th finger" EXACT [] synonym: "digit 5 of fore-paw" EXACT [EMAPA:17441] synonym: "fifth digit of hand" EXACT [FMA:24949] synonym: "fifth finger" EXACT [] synonym: "finger 5" EXACT [EHDAA2:0000535] synonym: "little finger" NARROW [] xref: EHDAA2:0000535 xref: EMAPA:17441 xref: FMA:24949 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ed/Pink.jpg/200px-Pink.jpg xref: MA:0000458 xref: ncithesaurus:Hand_Digit_5 is_a: UBERON:0002389 ! hand digit is_a: UBERON:0006052 ! implied link automatically realized ! digit 5 relationship: part_of UBERON:0002398 intersection_of: UBERON:0006052 ! digit 5 intersection_of: part_of UBERON:0002398 ! hand [Term] id: UBERON:0003631 name: foot digit 1 def: "1st digit of the foot in mouse and human and homologs." [Wikipedia:Big_toe] synonym: "big toe" NARROW [] synonym: "digit 1 of hind-paw" EXACT [EMAPA:17460] synonym: "digitus primus (I) pedis" RELATED [BTO:0002349] synonym: "great toe" NARROW [] synonym: "hallex" RELATED [] synonym: "hallux" EXACT [] synonym: "hallux; digitus primus [i]" EXACT [FMA:25047] synonym: "toe 1" EXACT [EHDAA2:0002037] xref: BTO:0002349 xref: EHDAA2:0002037 xref: EMAPA:17460 xref: FMA:25047 xref: GAID:45 xref: MA:0000465 xref: MESH:A.01.378.610.250.300.792.380 xref: ncithesaurus:Foot_Digit_1 is_a: UBERON:0001466 ! foot digit is_a: UBERON:0006048 ! implied link automatically realized ! digit 1 relationship: part_of UBERON:0002387 intersection_of: UBERON:0006048 ! digit 1 intersection_of: part_of UBERON:0002387 ! foot [Term] id: UBERON:0003632 name: foot digit 2 def: "2nd digit of the foot in mouse and human and homologs." [UBERON:cjm] synonym: "2nd toe" EXACT [] synonym: "digit 2 of hind-paw" EXACT [EMAPA:17463] synonym: "digitus secundus (II) pedis" RELATED [BTO:0002350] synonym: "digitus secundus [ii]" EXACT [FMA:25048] synonym: "digitus secundus pedis" EXACT [BTO:0002350] synonym: "second digit of foot" EXACT [FMA:25048] synonym: "second toe" EXACT [FMA:25048] synonym: "toe 2" EXACT [EHDAA2:0002042] xref: BTO:0002350 xref: EHDAA2:0002042 xref: EMAPA:17463 xref: FMA:25048 xref: MA:0000466 xref: ncithesaurus:Foot_Digit_2 xref: SCTID:362817008 is_a: UBERON:0001466 ! foot digit is_a: UBERON:0006049 ! implied link automatically realized ! digit 2 relationship: part_of UBERON:0002387 intersection_of: UBERON:0006049 ! digit 2 intersection_of: part_of UBERON:0002387 ! foot [Term] id: UBERON:0003633 name: foot digit 3 def: "3rd digit of the foot in mouse and human and homologs." [UBERON:cjm] synonym: "3rd toe" EXACT [] synonym: "digit 3 of hind-paw" EXACT [EMAPA:17466] synonym: "digitus tertius (III) pedis" RELATED [BTO:0002351] synonym: "digitus tertius [iii]" EXACT [FMA:25051] synonym: "digitus tertius pedis" EXACT [BTO:0002351] synonym: "third digit of foot" EXACT [FMA:25051] synonym: "third toe" EXACT [FMA:25051] synonym: "toe 3" EXACT [EHDAA2:0002047] xref: BTO:0002351 xref: EHDAA2:0002047 xref: EMAPA:17466 xref: FMA:25051 xref: MA:0000467 xref: ncithesaurus:Foot_Digit_3 xref: SCTID:362821001 is_a: UBERON:0001466 ! foot digit is_a: UBERON:0006050 ! implied link automatically realized ! digit 3 relationship: part_of UBERON:0002387 intersection_of: UBERON:0006050 ! digit 3 intersection_of: part_of UBERON:0002387 ! foot [Term] id: UBERON:0003634 name: foot digit 4 def: "4th digit of the foot in mouse and human and homologs." [UBERON:cjm] synonym: "4th toe" EXACT [] synonym: "digit 4 of hind-paw" EXACT [EMAPA:17469] synonym: "digitus quartis pedis" EXACT [BTO:0002352] synonym: "digitus quartus (IV) pedis" RELATED [BTO:0002352] synonym: "digitus quartus [iv]" EXACT [FMA:25052] synonym: "fourth digit of foot" EXACT [FMA:25052] synonym: "fourth toe" EXACT [FMA:25052] synonym: "toe 4" EXACT [EHDAA2:0002052] xref: BTO:0002352 xref: EHDAA2:0002052 xref: EMAPA:17469 xref: FMA:25052 xref: MA:0000468 xref: ncithesaurus:Foot_Digit_4 xref: SCTID:362826006 is_a: UBERON:0001466 ! foot digit is_a: UBERON:0006051 ! digit 4 relationship: part_of UBERON:0002387 ! foot [Term] id: UBERON:0003635 name: foot digit 5 def: "5th digit of the foot in mouse and human and homologs." [UBERON:cjm, Wikipedia:Fifth_toe] synonym: "5th toe" EXACT [] synonym: "digit 5 of hind-paw" EXACT [EMAPA:17472] synonym: "digitus minimus; digitus quintus [v]" EXACT [FMA:25053] synonym: "digitus quintus [v] pedis" EXACT [FMA:25053, FMA:TA] synonym: "fifth digit of foot" EXACT [FMA:25053] synonym: "fifth toe" EXACT [FMA:25053] synonym: "little toe" NARROW [] synonym: "toe 5" EXACT [EHDAA2:0002057] xref: BTO:0002353 xref: EHDAA2:0002057 xref: EMAPA:17472 xref: FMA:25053 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Gray291.png/200px-Gray291.png xref: MA:0000469 xref: ncithesaurus:Foot_Digit_5 xref: SCTID:362830009 is_a: UBERON:0001466 ! foot digit is_a: UBERON:0006052 ! implied link automatically realized ! digit 5 relationship: part_of UBERON:0002387 intersection_of: UBERON:0006052 ! digit 5 intersection_of: part_of UBERON:0002387 ! foot [Term] id: UBERON:0003636 name: hand digit 2 phalanx def: "A phalanx that is part of a hand digit 2 [Obol]." [OBOL:automatic] synonym: "2 nd digit of hand digit long bone" EXACT [OBOL:automatic] synonym: "2 nd digit of hand long bone of digit" EXACT [OBOL:automatic] synonym: "2 nd digit of hand phalanx" EXACT [OBOL:automatic] synonym: "2 nd finger digit long bone" EXACT [OBOL:automatic] synonym: "2 nd finger long bone of digit" EXACT [OBOL:automatic] synonym: "2 nd finger phalanx" EXACT [OBOL:automatic] synonym: "digit long bone of 2 nd digit of hand" EXACT [OBOL:automatic] synonym: "digit long bone of 2 nd finger" EXACT [OBOL:automatic] synonym: "digit long bone of hand digit 2" EXACT [OBOL:automatic] synonym: "digit long bone of second finger" EXACT [OBOL:automatic] synonym: "hand digit 2 digit long bone" EXACT [OBOL:automatic] synonym: "hand digit 2 long bone of digit" EXACT [OBOL:automatic] synonym: "index finger phalanx" EXACT [FMA:35480] synonym: "long bone of digit of 2 nd digit of hand" EXACT [OBOL:automatic] synonym: "long bone of digit of 2 nd finger" EXACT [OBOL:automatic] synonym: "long bone of digit of hand digit 2" EXACT [OBOL:automatic] synonym: "long bone of digit of second finger" EXACT [OBOL:automatic] synonym: "phalanx of 2 nd digit of hand" EXACT [OBOL:automatic] synonym: "phalanx of 2 nd finger" EXACT [OBOL:automatic] synonym: "phalanx of hand digit 2" EXACT [OBOL:automatic] synonym: "phalanx of index finger" EXACT [FMA:35480] synonym: "phalanx of second finger" EXACT [OBOL:automatic] synonym: "second finger digit long bone" EXACT [OBOL:automatic] synonym: "second finger long bone of digit" EXACT [OBOL:automatic] synonym: "second finger phalanx" EXACT [OBOL:automatic] xref: FMA:35480 xref: MA:0001390 xref: ncithesaurus:Hand_Digit_2_Phalanx xref: SCTID:361783009 is_a: UBERON:0001436 ! implied link automatically realized ! phalanx of finger relationship: part_of UBERON:0003622 intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003622 ! hand digit 2 [Term] id: UBERON:0003637 name: hand digit 3 phalanx def: "A phalanx that is part of a hand digit 3 [Obol]." [OBOL:automatic] synonym: "3 rd digit of hand digit long bone" EXACT [OBOL:automatic] synonym: "3 rd digit of hand long bone of digit" EXACT [OBOL:automatic] synonym: "3 rd digit of hand phalanx" EXACT [OBOL:automatic] synonym: "3 rd finger digit long bone" EXACT [OBOL:automatic] synonym: "3 rd finger long bone of digit" EXACT [OBOL:automatic] synonym: "3 rd finger phalanx" EXACT [OBOL:automatic] synonym: "digit long bone of 3 rd digit of hand" EXACT [OBOL:automatic] synonym: "digit long bone of 3 rd finger" EXACT [OBOL:automatic] synonym: "digit long bone of hand digit 3" EXACT [OBOL:automatic] synonym: "digit long bone of third finger" EXACT [OBOL:automatic] synonym: "hand digit 3 digit long bone" EXACT [OBOL:automatic] synonym: "hand digit 3 long bone of digit" EXACT [OBOL:automatic] synonym: "long bone of digit of 3 rd digit of hand" EXACT [OBOL:automatic] synonym: "long bone of digit of 3 rd finger" EXACT [OBOL:automatic] synonym: "long bone of digit of hand digit 3" EXACT [OBOL:automatic] synonym: "long bone of digit of third finger" EXACT [OBOL:automatic] synonym: "middle finger phalanx" EXACT [FMA:35483] synonym: "phalanx of 3 rd digit of hand" EXACT [OBOL:automatic] synonym: "phalanx of 3 rd finger" EXACT [OBOL:automatic] synonym: "phalanx of hand digit 3" EXACT [OBOL:automatic] synonym: "phalanx of middle finger" EXACT [FMA:35483] synonym: "phalanx of third finger" EXACT [OBOL:automatic] synonym: "third finger digit long bone" EXACT [OBOL:automatic] synonym: "third finger long bone of digit" EXACT [OBOL:automatic] synonym: "third finger phalanx" EXACT [OBOL:automatic] xref: FMA:35483 xref: MA:0001391 xref: ncithesaurus:Hand_Digit_3_Phalanx xref: SCTID:361785002 is_a: UBERON:0001436 ! implied link automatically realized ! phalanx of finger relationship: part_of UBERON:0003623 intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003623 ! hand digit 3 [Term] id: UBERON:0003638 name: hand digit 4 phalanx def: "A phalanx that is part of a hand digit 4 [Obol]." [OBOL:automatic] synonym: "4 th digit of hand digit long bone" EXACT [OBOL:automatic] synonym: "4 th digit of hand long bone of digit" EXACT [OBOL:automatic] synonym: "4 th digit of hand phalanx" EXACT [OBOL:automatic] synonym: "4 th finger digit long bone" EXACT [OBOL:automatic] synonym: "4 th finger long bone of digit" EXACT [OBOL:automatic] synonym: "4 th finger phalanx" EXACT [OBOL:automatic] synonym: "digit long bone of 4 th digit of hand" EXACT [OBOL:automatic] synonym: "digit long bone of 4 th finger" EXACT [OBOL:automatic] synonym: "digit long bone of fourth finger" EXACT [OBOL:automatic] synonym: "digit long bone of hand digit 4" EXACT [OBOL:automatic] synonym: "fourth finger digit long bone" EXACT [OBOL:automatic] synonym: "fourth finger long bone of digit" EXACT [OBOL:automatic] synonym: "fourth finger phalanx" EXACT [OBOL:automatic] synonym: "hand digit 4 digit long bone" EXACT [OBOL:automatic] synonym: "hand digit 4 long bone of digit" EXACT [OBOL:automatic] synonym: "long bone of digit of 4 th digit of hand" EXACT [OBOL:automatic] synonym: "long bone of digit of 4 th finger" EXACT [OBOL:automatic] synonym: "long bone of digit of fourth finger" EXACT [OBOL:automatic] synonym: "long bone of digit of hand digit 4" EXACT [OBOL:automatic] synonym: "phalanx of 4 th digit of hand" EXACT [OBOL:automatic] synonym: "phalanx of 4 th finger" EXACT [OBOL:automatic] synonym: "phalanx of fourth finger" EXACT [OBOL:automatic] synonym: "phalanx of hand digit 4" EXACT [OBOL:automatic] synonym: "phalanx of ring finger" EXACT [FMA:35486] synonym: "ring finger phalanx" EXACT [FMA:35486] xref: FMA:35486 xref: MA:0001392 xref: ncithesaurus:Hand_Digit_4_Phalanx xref: SCTID:361787005 is_a: UBERON:0001436 ! implied link automatically realized ! phalanx of finger relationship: part_of UBERON:0003624 intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003624 ! hand digit 4 [Term] id: UBERON:0003639 name: hand digit 5 phalanx def: "A phalanx that is part of a hand digit 5 [Obol]." [OBOL:automatic] synonym: "5 th digit of hand digit long bone" EXACT [OBOL:automatic] synonym: "5 th digit of hand long bone of digit" EXACT [OBOL:automatic] synonym: "5 th digit of hand phalanx" EXACT [OBOL:automatic] synonym: "5 th finger digit long bone" EXACT [OBOL:automatic] synonym: "5 th finger long bone of digit" EXACT [OBOL:automatic] synonym: "5 th finger phalanx" EXACT [OBOL:automatic] synonym: "digit long bone of 5 th digit of hand" EXACT [OBOL:automatic] synonym: "digit long bone of 5 th finger" EXACT [OBOL:automatic] synonym: "digit long bone of fifth finger" EXACT [OBOL:automatic] synonym: "digit long bone of hand digit 5" EXACT [OBOL:automatic] synonym: "fifth finger digit long bone" EXACT [OBOL:automatic] synonym: "fifth finger long bone of digit" EXACT [OBOL:automatic] synonym: "fifth finger phalanx" EXACT [OBOL:automatic] synonym: "hand digit 5 digit long bone" EXACT [OBOL:automatic] synonym: "hand digit 5 long bone of digit" EXACT [OBOL:automatic] synonym: "little finger phalanx" EXACT [FMA:35489] synonym: "long bone of digit of 5 th digit of hand" EXACT [OBOL:automatic] synonym: "long bone of digit of 5 th finger" EXACT [OBOL:automatic] synonym: "long bone of digit of fifth finger" EXACT [OBOL:automatic] synonym: "long bone of digit of hand digit 5" EXACT [OBOL:automatic] synonym: "phalanx of 5 th digit of hand" EXACT [OBOL:automatic] synonym: "phalanx of 5 th finger" EXACT [OBOL:automatic] synonym: "phalanx of fifth digit of hand" EXACT [FMA:35489] synonym: "phalanx of fifth finger" EXACT [OBOL:automatic] synonym: "phalanx of hand digit 5" EXACT [OBOL:automatic] synonym: "phalanx of little finger" EXACT [FMA:35489] xref: FMA:35489 xref: MA:0001393 xref: ncithesaurus:Hand_Digit_5_Phalanx xref: SCTID:361789008 is_a: UBERON:0001436 ! implied link automatically realized ! phalanx of finger relationship: part_of UBERON:0003625 intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003625 ! hand digit 5 [Term] id: UBERON:0003640 name: foot digit 1 phalanx def: "A phalanx that is part of a foot digit 1 [Obol]." [OBOL:automatic] synonym: "big toe phalanx" EXACT [FMA:32884] synonym: "digit long bone of foot digit 1" EXACT [OBOL:automatic] synonym: "digit long bone of hallux" EXACT [OBOL:automatic] synonym: "foot digit 1 digit long bone" EXACT [OBOL:automatic] synonym: "foot digit 1 long bone of digit" EXACT [OBOL:automatic] synonym: "hallux digit long bone" EXACT [OBOL:automatic] synonym: "hallux long bone of digit" EXACT [OBOL:automatic] synonym: "hallux phalanx" EXACT [OBOL:automatic] synonym: "long bone of digit of foot digit 1" EXACT [OBOL:automatic] synonym: "long bone of digit of hallux" EXACT [OBOL:automatic] synonym: "phalanx of big toe" EXACT [FMA:32884] synonym: "phalanx of first digit of foot" EXACT [FMA:32884] synonym: "phalanx of foot digit 1" EXACT [OBOL:automatic] synonym: "phalanx of great toe" EXACT [FMA:32884] synonym: "phalanx of hallux" EXACT [OBOL:automatic] xref: FMA:32884 xref: MA:0001381 xref: ncithesaurus:Foot_Digit_1_Phalanx xref: SCTID:361798006 is_a: UBERON:0001449 ! implied link automatically realized ! phalanx of toe relationship: part_of UBERON:0003631 intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003631 ! foot digit 1 [Term] id: UBERON:0003641 name: foot digit 2 phalanx def: "A phalanx that is part of a foot digit 2 [Obol]." [OBOL:automatic] synonym: "digit long bone of foot digit 2" EXACT [OBOL:automatic] synonym: "foot digit 2 digit long bone" EXACT [OBOL:automatic] synonym: "foot digit 2 long bone of digit" EXACT [OBOL:automatic] synonym: "long bone of digit of foot digit 2" EXACT [OBOL:automatic] synonym: "phalanx of foot digit 2" EXACT [OBOL:automatic] synonym: "phalanx of second toe" EXACT [FMA:32899] synonym: "second toe phalanx" EXACT [FMA:32899] xref: FMA:32899 xref: MA:0001382 xref: ncithesaurus:Foot_Digit_2_Phalanx xref: SCTID:361800004 is_a: UBERON:0001449 ! implied link automatically realized ! phalanx of toe relationship: part_of UBERON:0003632 intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003632 ! foot digit 2 [Term] id: UBERON:0003642 name: foot digit 3 phalanx def: "A phalanx that is part of a foot digit 3 [Obol]." [OBOL:automatic] synonym: "digit long bone of foot digit 3" EXACT [OBOL:automatic] synonym: "foot digit 3 digit long bone" EXACT [OBOL:automatic] synonym: "foot digit 3 long bone of digit" EXACT [OBOL:automatic] synonym: "long bone of digit of foot digit 3" EXACT [OBOL:automatic] synonym: "phalanx of foot digit 3" EXACT [OBOL:automatic] synonym: "phalanx of third toe" EXACT [FMA:32900] synonym: "third toe phalanx" EXACT [FMA:32900] xref: FMA:32900 xref: MA:0001383 xref: ncithesaurus:Foot_Digit_3_Phalanx xref: SCTID:361802007 is_a: UBERON:0001449 ! implied link automatically realized ! phalanx of toe relationship: part_of UBERON:0003633 intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003633 ! foot digit 3 [Term] id: UBERON:0003643 name: respiratory system arterial blood vessel def: "An arterial blood vessel that is part of a respiratory system [Obol]." [OBOL:automatic] xref: MA:0001800 is_a: UBERON:0003504 ! implied link automatically realized ! respiratory system blood vessel is_a: UBERON:0003509 ! implied link automatically realized ! arterial blood vessel relationship: part_of UBERON:0001004 intersection_of: UBERON:0003509 ! arterial blood vessel intersection_of: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0003644 name: kidney arterial blood vessel def: "An arterial blood vessel that is part of a kidney [Obol]." [OBOL:automatic] xref: MA:0002578 is_a: UBERON:0003509 ! implied link automatically realized ! arterial blood vessel is_a: UBERON:0003517 ! implied link automatically realized ! kidney blood vessel relationship: part_of UBERON:0002113 intersection_of: UBERON:0003509 ! arterial blood vessel intersection_of: part_of UBERON:0002113 ! kidney [Term] id: UBERON:0003645 name: metacarpal bone of digit 1 def: "A metacarpal bone that is part of a hand digit 1 [Obol]." [OBOL:automatic] synonym: "first digit of hand metacarpal" EXACT [OBOL:automatic] synonym: "first digit of hand metacarpal bone" EXACT [OBOL:automatic] synonym: "first metacarpal bone" EXACT [FMA:23899] synonym: "hand digit 1 metacarpal" EXACT [OBOL:automatic] synonym: "hand digit 1 metacarpal bone" EXACT [OBOL:automatic] synonym: "metacarpal bone digit 1" EXACT [MA:0001364] synonym: "metacarpal bone of first digit of hand" EXACT [OBOL:automatic] synonym: "metacarpal bone of hand digit 1" EXACT [OBOL:automatic] synonym: "metacarpal bone of Pollex ; Digitus primus [ I ]" EXACT [OBOL:automatic] synonym: "metacarpal bone of thumb" EXACT [OBOL:automatic] synonym: "metacarpal i" EXACT [FMA:23899] synonym: "metacarpal of first digit of hand" EXACT [OBOL:automatic] synonym: "metacarpal of hand digit 1" EXACT [OBOL:automatic] synonym: "metacarpal of Pollex ; Digitus primus [ I ]" EXACT [OBOL:automatic] synonym: "metacarpal of thumb" EXACT [OBOL:automatic] synonym: "Pollex ; Digitus primus [ I ] metacarpal" EXACT [OBOL:automatic] synonym: "Pollex ; Digitus primus [ I ] metacarpal bone" EXACT [OBOL:automatic] synonym: "thumb metacarpal" EXACT [OBOL:automatic] synonym: "thumb metacarpal bone" EXACT [OBOL:automatic] xref: FMA:23899 xref: MA:0001364 xref: ncithesaurus:Metacarpal_Bone_Digit_1 is_a: UBERON:0002374 ! implied link automatically realized ! metacarpal bone is_a: UBERON:0003620 ! implied link automatically realized ! hand digit 1 phalanx relationship: part_of UBERON:0001463 intersection_of: UBERON:0002374 ! metacarpal bone intersection_of: part_of UBERON:0001463 ! hand digit 1 [Term] id: UBERON:0003646 name: metacarpal bone of digit 2 def: "A metacarpal bone that is part of a hand digit 2 [Obol]." [OBOL:automatic] synonym: "2 nd digit of hand metacarpal" EXACT [OBOL:automatic] synonym: "2 nd digit of hand metacarpal bone" EXACT [OBOL:automatic] synonym: "2 nd finger metacarpal" EXACT [OBOL:automatic] synonym: "2 nd finger metacarpal bone" EXACT [OBOL:automatic] synonym: "hand digit 2 metacarpal" EXACT [OBOL:automatic] synonym: "hand digit 2 metacarpal bone" EXACT [OBOL:automatic] synonym: "metacarpal bone digit 2" EXACT [MA:0001365] synonym: "metacarpal bone of 2 nd digit of hand" EXACT [OBOL:automatic] synonym: "metacarpal bone of 2 nd finger" EXACT [OBOL:automatic] synonym: "metacarpal bone of hand digit 2" EXACT [OBOL:automatic] synonym: "metacarpal bone of second finger" EXACT [OBOL:automatic] synonym: "metacarpal ii" EXACT [FMA:23900] synonym: "metacarpal of 2 nd digit of hand" EXACT [OBOL:automatic] synonym: "metacarpal of 2 nd finger" EXACT [OBOL:automatic] synonym: "metacarpal of hand digit 2" EXACT [OBOL:automatic] synonym: "metacarpal of second finger" EXACT [OBOL:automatic] synonym: "second finger metacarpal" EXACT [OBOL:automatic] synonym: "second finger metacarpal bone" EXACT [OBOL:automatic] synonym: "second metacarpal bone" EXACT [FMA:23900] xref: FMA:23900 xref: MA:0001365 xref: ncithesaurus:Metacarpal_Bone_Digit_2 is_a: UBERON:0002374 ! implied link automatically realized ! metacarpal bone is_a: UBERON:0003636 ! implied link automatically realized ! hand digit 2 phalanx relationship: part_of UBERON:0003622 intersection_of: UBERON:0002374 ! metacarpal bone intersection_of: part_of UBERON:0003622 ! hand digit 2 [Term] id: UBERON:0003647 name: metacarpal bone of digit 3 def: "A metacarpal bone that is part of a hand digit 3 [Obol]." [OBOL:automatic] synonym: "3 rd digit of hand metacarpal" EXACT [OBOL:automatic] synonym: "3 rd digit of hand metacarpal bone" EXACT [OBOL:automatic] synonym: "3 rd finger metacarpal" EXACT [OBOL:automatic] synonym: "3 rd finger metacarpal bone" EXACT [OBOL:automatic] synonym: "hand digit 3 metacarpal" EXACT [OBOL:automatic] synonym: "hand digit 3 metacarpal bone" EXACT [OBOL:automatic] synonym: "metacarpal bone digit 3" EXACT [MA:0001366] synonym: "metacarpal bone of 3 rd digit of hand" EXACT [OBOL:automatic] synonym: "metacarpal bone of 3 rd finger" EXACT [OBOL:automatic] synonym: "metacarpal bone of hand digit 3" EXACT [OBOL:automatic] synonym: "metacarpal bone of third finger" EXACT [OBOL:automatic] synonym: "metacarpal iii" EXACT [FMA:23901] synonym: "metacarpal of 3 rd digit of hand" EXACT [OBOL:automatic] synonym: "metacarpal of 3 rd finger" EXACT [OBOL:automatic] synonym: "metacarpal of hand digit 3" EXACT [OBOL:automatic] synonym: "metacarpal of third finger" EXACT [OBOL:automatic] synonym: "third finger metacarpal" EXACT [OBOL:automatic] synonym: "third finger metacarpal bone" EXACT [OBOL:automatic] synonym: "third metacarpal bone" EXACT [FMA:23901] xref: FMA:23901 xref: MA:0001366 xref: ncithesaurus:Metacarpal_Bone_Digit_3 is_a: UBERON:0002374 ! implied link automatically realized ! metacarpal bone is_a: UBERON:0003637 ! implied link automatically realized ! hand digit 3 phalanx relationship: part_of UBERON:0003623 intersection_of: UBERON:0002374 ! metacarpal bone intersection_of: part_of UBERON:0003623 ! hand digit 3 [Term] id: UBERON:0003648 name: metacarpal bone of digit 4 def: "A metacarpal bone that is part of a hand digit 4 [Obol]." [OBOL:automatic] synonym: "4 th digit of hand metacarpal" EXACT [OBOL:automatic] synonym: "4 th digit of hand metacarpal bone" EXACT [OBOL:automatic] synonym: "4 th finger metacarpal" EXACT [OBOL:automatic] synonym: "4 th finger metacarpal bone" EXACT [OBOL:automatic] synonym: "fourth finger metacarpal" EXACT [OBOL:automatic] synonym: "fourth finger metacarpal bone" EXACT [OBOL:automatic] synonym: "fourth metacarpal bone" EXACT [FMA:23902] synonym: "hand digit 4 metacarpal" EXACT [OBOL:automatic] synonym: "hand digit 4 metacarpal bone" EXACT [OBOL:automatic] synonym: "metacarpal bone digit 4" EXACT [MA:0001367] synonym: "metacarpal bone of 4 th digit of hand" EXACT [OBOL:automatic] synonym: "metacarpal bone of 4 th finger" EXACT [OBOL:automatic] synonym: "metacarpal bone of fourth finger" EXACT [OBOL:automatic] synonym: "metacarpal bone of hand digit 4" EXACT [OBOL:automatic] synonym: "metacarpal iv" EXACT [FMA:23902] synonym: "metacarpal of 4 th digit of hand" EXACT [OBOL:automatic] synonym: "metacarpal of 4 th finger" EXACT [OBOL:automatic] synonym: "metacarpal of fourth finger" EXACT [OBOL:automatic] synonym: "metacarpal of hand digit 4" EXACT [OBOL:automatic] xref: FMA:23902 xref: MA:0001367 xref: ncithesaurus:Metacarpal_Bone_Digit_4 is_a: UBERON:0002374 ! implied link automatically realized ! metacarpal bone is_a: UBERON:0003638 ! implied link automatically realized ! hand digit 4 phalanx relationship: part_of UBERON:0003624 intersection_of: UBERON:0002374 ! metacarpal bone intersection_of: part_of UBERON:0003624 ! hand digit 4 [Term] id: UBERON:0003649 name: metacarpal bone of digit 5 def: "A metacarpal bone that is part of a hand digit 5 [Obol]." [OBOL:automatic] comment: note FMA also has FMA:36782 synonym: "5 th digit of hand metacarpal" EXACT [OBOL:automatic] synonym: "5 th digit of hand metacarpal bone" EXACT [OBOL:automatic] synonym: "5 th finger metacarpal" EXACT [OBOL:automatic] synonym: "5 th finger metacarpal bone" EXACT [OBOL:automatic] synonym: "fifth finger metacarpal" EXACT [OBOL:automatic] synonym: "fifth finger metacarpal bone" EXACT [OBOL:automatic] synonym: "fifth metacarpal bone" EXACT [FMA:23903] synonym: "hand digit 5 metacarpal" EXACT [OBOL:automatic] synonym: "hand digit 5 metacarpal bone" EXACT [OBOL:automatic] synonym: "metacarpal bone digit 5" EXACT [MA:0001368] synonym: "metacarpal bone of 5 th digit of hand" EXACT [OBOL:automatic] synonym: "metacarpal bone of 5 th finger" EXACT [OBOL:automatic] synonym: "metacarpal bone of fifth finger" EXACT [OBOL:automatic] synonym: "metacarpal bone of hand digit 5" EXACT [OBOL:automatic] synonym: "metacarpal of 5 th digit of hand" EXACT [OBOL:automatic] synonym: "metacarpal of 5 th finger" EXACT [OBOL:automatic] synonym: "metacarpal of fifth finger" EXACT [OBOL:automatic] synonym: "metacarpal of hand digit 5" EXACT [OBOL:automatic] xref: FMA:23903 xref: MA:0001368 xref: ncithesaurus:Metacarpal_Bone_Digit_5 is_a: UBERON:0002374 ! implied link automatically realized ! metacarpal bone is_a: UBERON:0003639 ! implied link automatically realized ! hand digit 5 phalanx relationship: part_of UBERON:0003625 intersection_of: UBERON:0002374 ! metacarpal bone intersection_of: part_of UBERON:0003625 ! hand digit 5 [Term] id: UBERON:0003650 name: metatarsal bone of digit 1 def: "A metatarsal bone that is part of a foot digit 1 [Obol]." [OBOL:automatic] synonym: "first metatarsal bone" EXACT [FMA:24502] synonym: "foot digit 1 metatarsal bone" EXACT [OBOL:automatic] synonym: "hallux metatarsal bone" EXACT [OBOL:automatic] synonym: "metatarsal bone digit 1" EXACT [MA:0001369] synonym: "metatarsal bone of foot digit 1" EXACT [OBOL:automatic] synonym: "metatarsal bone of hallux" EXACT [OBOL:automatic] synonym: "metatarsal I" EXACT [AAO:0000925] xref: AAO:0000925 xref: FMA:24502 xref: MA:0001369 xref: ncithesaurus:Metatarsal_Bone_Digit_1 xref: SCTID:182121005 is_a: UBERON:0001448 ! implied link automatically realized ! metatarsal bone is_a: UBERON:0003640 ! implied link automatically realized ! foot digit 1 phalanx relationship: part_of UBERON:0003631 intersection_of: UBERON:0001448 ! metatarsal bone intersection_of: part_of UBERON:0003631 ! foot digit 1 [Term] id: UBERON:0003651 name: metatarsal bone of digit 2 def: "A metatarsal bone that is part of a foot digit 2 [Obol]." [OBOL:automatic] synonym: "foot digit 2 metatarsal bone" EXACT [OBOL:automatic] synonym: "metatarsal bone digit 2" EXACT [MA:0001370] synonym: "metatarsal bone of foot digit 2" EXACT [OBOL:automatic] synonym: "metatarsal II" EXACT [AAO:0000926] synonym: "second metatarsal bone" EXACT [FMA:24503] xref: AAO:0000926 xref: FMA:24503 xref: MA:0001370 xref: ncithesaurus:Metatarsal_Bone_Digit_2 xref: SCTID:182128004 is_a: UBERON:0001448 ! implied link automatically realized ! metatarsal bone is_a: UBERON:0003641 ! implied link automatically realized ! foot digit 2 phalanx relationship: part_of UBERON:0003632 intersection_of: UBERON:0001448 ! metatarsal bone intersection_of: part_of UBERON:0003632 ! foot digit 2 [Term] id: UBERON:0003652 name: metatarsal bone of digit 3 def: "A metatarsal bone that is part of a foot digit 3 [Obol]." [OBOL:automatic] synonym: "foot digit 3 metatarsal bone" EXACT [OBOL:automatic] synonym: "metatarsal bone digit 3" EXACT [MA:0001371] synonym: "metatarsal bone of foot digit 3" EXACT [OBOL:automatic] synonym: "metatarsal III" EXACT [AAO:0000927] synonym: "third metatarsal bone" EXACT [FMA:24504] xref: AAO:0000927 xref: FMA:24504 xref: MA:0001371 xref: ncithesaurus:Metatarsal_Bone_Digit_3 xref: SCTID:182134006 is_a: UBERON:0001448 ! implied link automatically realized ! metatarsal bone is_a: UBERON:0003642 ! implied link automatically realized ! foot digit 3 phalanx relationship: part_of UBERON:0003633 intersection_of: UBERON:0001448 ! metatarsal bone intersection_of: part_of UBERON:0003633 ! foot digit 3 [Term] id: UBERON:0003653 name: metatarsal bone of digit 4 def: "A metatarsal bone that is part of a foot digit 4 [Obol]." [OBOL:automatic] synonym: "foot digit 4 metatarsal bone" EXACT [OBOL:automatic] synonym: "fourth metatarsal bone" EXACT [FMA:24505] synonym: "metatarsal bone digit 4" EXACT [MA:0001372] synonym: "metatarsal bone of foot digit 4" EXACT [OBOL:automatic] synonym: "metatarsal IV" EXACT [AAO:0000928] xref: AAO:0000928 xref: FMA:24505 xref: MA:0001372 xref: ncithesaurus:Metatarsal_Bone_Digit_4 xref: SCTID:182139001 is_a: UBERON:0001448 ! implied link automatically realized ! metatarsal bone is_a: UBERON:0003862 ! implied link automatically realized ! foot digit 4 phalanx relationship: part_of UBERON:0003634 intersection_of: UBERON:0001448 ! metatarsal bone intersection_of: part_of UBERON:0003634 ! foot digit 4 [Term] id: UBERON:0003654 name: metatarsal bone of digit 5 def: "A metatarsal bone that is part of a foot digit 5 [Obol]." [OBOL:automatic] synonym: "fifth metatarsal bone" EXACT [FMA:24506] synonym: "foot digit 5 metatarsal bone" EXACT [OBOL:automatic] synonym: "metatarsal bone digit 5" EXACT [MA:0001373] synonym: "metatarsal bone of foot digit 5" EXACT [OBOL:automatic] synonym: "metatarsal V" EXACT [AAO:0000929] xref: AAO:0000929 xref: FMA:24506 xref: MA:0001373 xref: ncithesaurus:Metatarsal_Bone_Digit_5 xref: SCTID:182144008 is_a: UBERON:0001448 ! implied link automatically realized ! metatarsal bone is_a: UBERON:0003863 ! implied link automatically realized ! foot digit 5 phalanx relationship: part_of UBERON:0003635 intersection_of: UBERON:0001448 ! metatarsal bone intersection_of: part_of UBERON:0003635 ! foot digit 5 [Term] id: UBERON:0003655 name: molar tooth def: "Molars are the rearmost and most complicated kind of tooth in most mammals." [Wikipedia:Molar_(tooth)] comment: Adult humans have twelve molars, in four groups of three at the back of the mouth. The third, rearmost molar in each group is called a wisdom tooth. It is the last tooth to appear, breaking through the surface of the gum at about the age of twenty, although this varies from individual to individual. Ethnicity can also have an impact on the age at which this occurs, with statistical variations between groups. The human mouth contains upper (maxillary) and lower (mandibular) molars. They are: maxillary first molar, maxillary second molar, maxillary third molar, mandibular first molar, mandibular second molar, and mandibular third molar. synonym: "dens molaris" EXACT [Wikipedia:Molar_%28tooth%29] synonym: "molar" EXACT [MA:0000350] synonym: "molaris" EXACT [BTO:0001759] xref: BTO:0001759 xref: FMA:55638 xref: MA:0000350 xref: MESH:A.14.254.860.525 xref: ncithesaurus:Molar_Tooth xref: SCTID:362115002 is_a: UBERON:0001091 ! calcareous tooth [Term] id: UBERON:0003656 name: mesopodium bone def: "The carpus (wrist) and tarsus (ankle) of land vertebrates primitively had three rows of carpal or tarsal bones. Often some of these have become lost or fused in evolution. Three proximals. In the hand humans has all three. In the foot the middle proximal appears in 5-15% of people as an os trigonum. Centrale or os centrale, on the medial side. In humans and our closest relatives the African apes (chimpanzees and gorillas) it fuses to the scaphoid where it forms the articulation with the trapezoid bone; occasionally it stays separate. In Man's foot it is the navicular. Some early land vertebrates had more than one (up to three) os centrale per hand or foot. Distals, one per finger / toe at the base of each metacarpal or metatarsal. In mammals the 4th and 5th fuse. In the horse the 1st is lost[WP]." [Wikipedia:Carpus_and_tarsus_of_land_vertebrates] synonym: "basipodium bone" EXACT [MA:th] synonym: "carpal/tarsal bone" EXACT [MA:0000295] xref: MA:0000295 is_a: UBERON:0002428 ! limb bone relationship: part_of UBERON:0006716 intersection_of: UBERON:0001474 ! bone intersection_of: part_of UBERON:0006716 ! mesopodium [Term] id: UBERON:0003657 name: limb joint def: "A skeletal joint that is part of a limb [Obol]." [OBOL:automatic] comment: we use the FMA set-of term in absence of a singular term synonym: "joint of limb" EXACT [] synonym: "joint of skeletal limb" EXACT [Obol:automatic] synonym: "skeletal limb joint" EXACT [GO:0036023] xref: EMAPA:19204 xref: FMA:71276 xref: galen:LimbJoint xref: MA:0000691 is_a: UBERON:0000982 ! implied link automatically realized ! skeletal joint relationship: part_of UBERON:0002101 intersection_of: UBERON:0000982 ! skeletal joint intersection_of: part_of UBERON:0002101 ! limb [Term] id: UBERON:0003658 name: hip muscle def: "A muscle organ that is part of a hip [Obol]." [OBOL:automatic] synonym: "hip muscle organ" EXACT [OBOL:automatic] synonym: "hip region muscle organ" EXACT [OBOL:automatic] synonym: "muscle organ of hip" EXACT [OBOL:automatic] synonym: "muscle organ of hip region" EXACT [OBOL:automatic] synonym: "muscle organ of regio coxae" EXACT [OBOL:automatic] synonym: "regio coxae muscle organ" EXACT [OBOL:automatic] xref: MA:0000657 is_a: UBERON:0001497 ! implied link automatically realized ! muscle of pelvic girdle relationship: part_of UBERON:0001464 intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0001464 ! hip [Term] id: UBERON:0003659 name: foot digit muscle def: "A muscle organ that is part of a toe [Obol]." [OBOL:automatic] synonym: "digit of foot muscle organ" EXACT [OBOL:automatic] synonym: "digit of terminal segment of free lower limb muscle organ" EXACT [OBOL:automatic] synonym: "digitus pedis muscle organ" EXACT [OBOL:automatic] synonym: "foot digit muscle organ" EXACT [OBOL:automatic] synonym: "muscle organ of digit of foot" EXACT [OBOL:automatic] synonym: "muscle organ of digit of terminal segment of free lower limb" EXACT [OBOL:automatic] synonym: "muscle organ of digitus pedis" EXACT [OBOL:automatic] synonym: "muscle organ of foot digit" EXACT [OBOL:automatic] synonym: "muscle organ of terminal segment of free lower limb digit" EXACT [OBOL:automatic] synonym: "muscle organ of toe" EXACT [OBOL:automatic] synonym: "terminal segment of free lower limb digit muscle organ" EXACT [OBOL:automatic] synonym: "toe muscle organ" EXACT [OBOL:automatic] xref: MA:0000648 is_a: UBERON:0001498 ! implied link automatically realized ! muscle of foot relationship: part_of UBERON:0001466 intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0001466 ! foot digit [Term] id: UBERON:0003660 name: eyelid muscle def: "A muscle organ that is part of a eyelid [Obol]." [OBOL:automatic] synonym: "blepharon muscle organ" EXACT [OBOL:automatic] synonym: "eyelid muscle organ" EXACT [OBOL:automatic] synonym: "muscle organ of blepharon" EXACT [OBOL:automatic] synonym: "muscle organ of eyelid" EXACT [OBOL:automatic] xref: MA:0000269 xref: ncithesaurus:Eyelid_Muscle is_a: UBERON:0004277 ! implied link automatically realized ! eye muscle relationship: part_of UBERON:0001711 intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0001711 ! eyelid [Term] id: UBERON:0003661 name: limb muscle def: "A muscle organ that is part of a limb [Obol]." [OBOL:automatic] synonym: "limb muscle organ" EXACT [OBOL:automatic] synonym: "muscle organ of limb" EXACT [OBOL:automatic] xref: MA:0000692 is_a: UBERON:0001630 ! implied link automatically realized ! muscle organ relationship: part_of UBERON:0002101 intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0002101 ! limb [Term] id: UBERON:0003662 name: forelimb muscle alt_id: UBERON:0005634 def: "A muscle that is part of a forelimb [Obol]." [OBOL:automatic] synonym: "arm muscle system" EXACT [EHDAA2:0000141] synonym: "fore limb muscle organ" EXACT [OBOL:automatic] synonym: "forelimb muscle organ" EXACT [OBOL:automatic] synonym: "muscle of upper limb" EXACT [FMA:9621] synonym: "musculature of arm" RELATED PLURAL [] synonym: "musculature of the arm" RELATED PLURAL [] synonym: "upper limb muscle" EXACT [FMA:9621] synonym: "wing muscle" NARROW SENSU [Geisha:syn] xref: AAO:0000204 xref: BTO:0000479 xref: FMA:9621 xref: MA:0000615 is_a: UBERON:0003661 ! implied link automatically realized ! limb muscle relationship: part_of UBERON:0002102 intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0002102 ! forelimb [Term] id: UBERON:0003663 name: hindlimb muscle def: "A muscle organ that is part of a hindlimb [Obol]." [OBOL:automatic] synonym: "hind limb muscle organ" EXACT [OBOL:automatic] synonym: "hindlimb muscle organ" EXACT [OBOL:automatic] synonym: "inferior member muscle organ" EXACT [OBOL:automatic] synonym: "lower extremity muscle organ" EXACT [OBOL:automatic] synonym: "lower limb muscle" EXACT [FMA:9622] synonym: "muscle of lower limb" EXACT [FMA:9622] synonym: "muscle organ of hind limb" EXACT [OBOL:automatic] synonym: "muscle organ of hindlimb" EXACT [OBOL:automatic] synonym: "muscle organ of inferior member" EXACT [OBOL:automatic] synonym: "muscle organ of lower extremity" EXACT [OBOL:automatic] xref: AAO:0000222 xref: EFO:0001928 xref: FMA:9622 xref: MA:0000663 is_a: UBERON:0001630 {source="FMA"} ! muscle organ is_a: UBERON:0003661 ! implied link automatically realized ! limb muscle relationship: part_of UBERON:0002103 intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0003664 name: hand digit muscle def: "A muscle organ that is part of a finger [Obol]." [OBOL:automatic] synonym: "digit of hand muscle organ" EXACT [OBOL:automatic] synonym: "digit of terminal segment of free upper limb muscle organ" EXACT [OBOL:automatic] synonym: "digitus manus muscle organ" EXACT [OBOL:automatic] synonym: "finger muscle organ" EXACT [OBOL:automatic] synonym: "hand digit muscle organ" EXACT [OBOL:automatic] synonym: "muscle organ of digit of hand" EXACT [OBOL:automatic] synonym: "muscle organ of digit of terminal segment of free upper limb" EXACT [OBOL:automatic] synonym: "muscle organ of digitus manus" EXACT [OBOL:automatic] synonym: "muscle organ of finger" EXACT [OBOL:automatic] synonym: "muscle organ of hand digit" EXACT [OBOL:automatic] synonym: "muscle organ of terminal segment of free upper limb digit" EXACT [OBOL:automatic] synonym: "terminal segment of free upper limb digit muscle organ" EXACT [OBOL:automatic] xref: MA:0000624 is_a: UBERON:0001500 ! implied link automatically realized ! muscle of hand relationship: part_of UBERON:0002389 intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0002389 ! hand digit [Term] id: UBERON:0003665 name: tail muscle def: "A muscle organ that is part of a tail [Obol]." [OBOL:automatic] synonym: "muscle organ of post-vent region" EXACT [OBOL:automatic] synonym: "muscle organ of tail" EXACT [OBOL:automatic] synonym: "post-vent region muscle organ" EXACT [OBOL:automatic] synonym: "tail muscle organ" EXACT [OBOL:automatic] xref: BTO:0001905 xref: MA:0000699 xref: SCTID:113230005 is_a: UBERON:0001630 ! implied link automatically realized ! muscle organ relationship: part_of UBERON:0007812 intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0007812 ! post-anal tail [Term] id: UBERON:0003666 name: upper jaw molar def: "A molar tooth that is part of a upper jaw [Obol]." [OBOL:automatic] synonym: "molar tooth of palatoquadrate arch" EXACT [OBOL:automatic] synonym: "molar tooth of upper jaw" EXACT [OBOL:automatic] synonym: "palatoquadrate arch molar tooth" EXACT [OBOL:automatic] synonym: "upper jaw molar tooth" EXACT [OBOL:automatic] synonym: "upper primary molar tooth" EXACT [FMA:84210] xref: EHDAA:8053 xref: EHDAA2:0002125 xref: EMAPA:17942 xref: FMA:55720 xref: MA:0001603 xref: ncithesaurus:Upper_Jaw_Molar xref: SCTID:422318005 is_a: UBERON:0003267 ! implied link automatically realized ! tooth of upper jaw is_a: UBERON:0003655 ! implied link automatically realized ! molar tooth relationship: part_of UBERON:0001709 intersection_of: UBERON:0003655 ! molar tooth intersection_of: part_of UBERON:0001709 ! upper jaw [Term] id: UBERON:0003667 name: lower jaw molar def: "A molar tooth that is part of a lower jaw [Obol]." [OBOL:automatic] synonym: "lower jaw molar tooth" EXACT [OBOL:automatic] synonym: "lower primary molar tooth" NARROW [FMA:84213] synonym: "molar tooth of lower jaw" EXACT [OBOL:automatic] synonym: "molar tooth of ventral mandibular arch" EXACT [OBOL:automatic] synonym: "ventral mandibular arch molar tooth" EXACT [OBOL:automatic] xref: EHDAA:8017 xref: EHDAA2:0001025 xref: EMAPA:17921 xref: FMA:55721 xref: MA:0001602 xref: ncithesaurus:Lower_Jaw_Molar is_a: UBERON:0003268 ! implied link automatically realized ! tooth of lower jaw is_a: UBERON:0003655 ! implied link automatically realized ! molar tooth relationship: part_of UBERON:0001710 intersection_of: UBERON:0003655 ! molar tooth intersection_of: part_of UBERON:0001710 ! lower jaw [Term] id: UBERON:0003668 name: synovial bursa def: "a small fluid-filled sac lined by synovial membrane with an inner capillary layer of slimy fluid. It provides a cushion between bones and tendons and/or muscles around a joint. This helps to reduce friction between the bones and allows free movement. Bursae are filled with synovial fluid and are found around most major joints of the body." [Wikipedia:Synovial_bursa] subset: organ_slim synonym: "bursa" EXACT [FMA:9692] xref: FMA:9692 xref: GAID:252 xref: galen:Bursa xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b3/Gray350.png/200px-Gray350.png xref: MESH:A.02.835.583.156 xref: ncithesaurus:Synovial_Bursa xref: SCTID:182483003 is_a: UBERON:0000062 ! organ [Term] id: UBERON:0003669 name: fascia lata def: "The fascia lata is the deep fascia of the thigh. [WP,unvetted]." [Wikipedia:Fascia_lata] xref: FMA:13902 xref: GAID:117 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e7/Gray431.png/200px-Gray431.png xref: MESH:A.02.340.424 xref: ncithesaurus:Fascia_Lata xref: SCTID:361911008 is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0003670 name: smegma def: "a combination of exfoliated (shed) epithelial cells, transudated skin oils, and moisture. It occurs in both female and male mammalian genitalia[WP]." [Wikipedia:Smegma] xref: FMA:19656 xref: GAID:1170 xref: MESH:A.12.200.769 xref: ncithesaurus:Smegma is_a: UBERON:0000456 ! secretion [Term] id: UBERON:0003671 name: anterior cruciate ligament xref: FMA:44614 xref: GAID:122 xref: galen:AnteriorCruciateLigament xref: MESH:A.02.513.514.100 xref: ncithesaurus:Anterior_Cruciate_Ligament xref: OpenCyc:Mx4r77KC8RuaEd2f4ADggVfexA is_a: UBERON:0003577 ! implied link automatically realized ! knee connective tissue is_a: UBERON:0006659 ! cruciate ligament is_a: UBERON:0008846 ! implied link automatically realized ! skeletal ligament relationship: part_of UBERON:0001485 ! knee joint [Term] id: UBERON:0003672 name: dentition comment: In FMA this is an anatomical set synonym: "dentes" EXACT [FMA:75150, FMA:TA] synonym: "set of teeth" EXACT [FMA:75150] synonym: "teeth" EXACT [FMA:75150] synonym: "teeth" RELATED [] synonym: "teeth set" EXACT [FMA:75150] xref: AAO:0000126 xref: FMA:75150 xref: GAID:1249 xref: MESH:A.14.254 xref: ncithesaurus:Dentition xref: OpenCyc:Mx4rvVi65JwpEbGdrcN5Y29ycA xref: SCTID:245543004 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0000477 {source="FMA"} ! anatomical cluster relationship: has_part UBERON:0001091 ! calcareous tooth relationship: part_of UBERON:0000165 {source="FMA"} ! mouth relationship: part_of UBERON:0003129 {source="AAO"} ! skull [Term] id: UBERON:0003673 name: ligamentum flavum synonym: "flaval ligament" RELATED [GAID:126] xref: FMA:13423 xref: GAID:126 xref: MESH:A.02.513.514.287 xref: ncithesaurus:Ligamentum_Flavum xref: SCTID:244598002 is_a: UBERON:0000211 ! ligament [Term] id: UBERON:0003674 name: cuspid def: "In mammalian oral anatomy, the canine teeth, also called cuspids, dogteeth, fangs, or (in the case of those of the upper jaw) eye teeth, are relatively long, pointed teeth. However, they can appear more flattened, causing them to resemble incisors and leading them to be called incisiform. They evolved and are used primarily for firmly holding food in order to tear it apart, and occasionally as weapons. They are often the largest teeth in a mammal's mouth. Most species that develop them normally have four per individual, two in the upper jaw and two in the lower, separated within each jaw by its incisors; humans and dogs are examples. In most animals, canines are the anterior-most teeth in the maxillary bone. The four canines in humans are the two maxillary canines and the two mandibular canines." [Wikipedia:Canine_tooth] synonym: "canine %28tooth%29" RELATED [Wikipedia:Canine_tooth] synonym: "canine eminence" RELATED [Wikipedia:Canine_tooth] synonym: "canine teeth" RELATED PLURAL [Wikipedia:Canine_tooth] synonym: "canine teeth" RELATED [GAID:1262] synonym: "canine tooth" RELATED [GAID:1262] synonym: "cuspid" EXACT [FMA:55636] synonym: "cuspis dentis" EXACT [FMA:55636, FMA:TA] synonym: "dens caninus" RELATED [Wikipedia:Canine_tooth] synonym: "dogtooth %28anatomy%29" RELATED [Wikipedia:Canine_tooth] synonym: "eye teeth" RELATED PLURAL [Wikipedia:Canine_tooth] synonym: "eye tooth" RELATED [Wikipedia:Canine_tooth] synonym: "eyeteeth" RELATED PLURAL [Wikipedia:Canine_tooth] synonym: "eyetooth" RELATED [Wikipedia:Canine_tooth] synonym: "fang" RELATED [Wikipedia:Canine_tooth] xref: FMA:55636 xref: GAID:1262 xref: MESH:A.14.254.860.200 xref: ncithesaurus:Canine_Tooth xref: SCTID:88719004 is_a: UBERON:0001091 ! calcareous tooth [Term] id: UBERON:0003675 name: tooth crown synonym: "anatomical crown" EXACT [FMA:55623] synonym: "corona dentis" EXACT [ncithesaurus:Corona_Dentis] synonym: "crown" RELATED [] synonym: "crown of tooth" EXACT [FMA:55623] synonym: "tooth crown" EXACT [FMA:55623] xref: FMA:55623 xref: GAID:1275 xref: MESH:A.14.254.900.710 xref: ncithesaurus:Corona_Dentis xref: SCTID:362106009 is_a: UBERON:0000063 ! organ segment is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure relationship: part_of UBERON:0001091 ! calcareous tooth [Term] id: UBERON:0003676 name: patellar ligament synonym: "central band of tendon of quadriceps femoris" EXACT [FMA:44581] synonym: "ligamentum patella" EXACT [FMA:44581] xref: EMAPA:18509 xref: EMAPA:19139 xref: FMA:44581 xref: GAID:128 xref: galen:LigamentumPatellae xref: MESH:A.02.513.514.475 xref: ncithesaurus:Patellar_Ligament xref: SCTID:244639004 is_a: UBERON:0000211 ! ligament is_a: UBERON:0003577 ! implied link automatically realized ! knee connective tissue is_a: UBERON:0008846 ! implied link automatically realized ! skeletal ligament relationship: part_of UBERON:0001485 ! knee joint [Term] id: UBERON:0003677 name: tooth root synonym: "radix corona" EXACT [FMA:55624] synonym: "root of tooth" EXACT [FMA:55624] synonym: "tooth root" EXACT [FMA:55624] xref: FMA:55624 xref: GAID:1280 xref: MESH:A.14.254.900.750 xref: SCTID:245728004 is_a: UBERON:0000063 ! organ segment is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure relationship: attached_to UBERON:0001091 ! calcareous tooth relationship: part_of UBERON:0001091 ! calcareous tooth [Term] id: UBERON:0003678 name: tooth apex synonym: "apex of tooth" EXACT [FMA:63000] synonym: "apical foramen" RELATED [GAID:1281] synonym: "tooth apex" EXACT [FMA:63000] synonym: "tooth apice" RELATED [GAID:1281] xref: FMA:63000 xref: GAID:1281 xref: MESH:A.14.254.900.750.700 is_a: UBERON:0000015 ! anatomical boundary relationship: part_of UBERON:0001091 ! calcareous tooth [Term] id: UBERON:0003679 name: mouth floor synonym: "floor of mouth" EXACT [FMA:86592] synonym: "sublingual region" RELATED [GAID:1283] xref: EFO:0001923 xref: FMA:86592 xref: GAID:1283 xref: MESH:A.14.549.441 xref: ncithesaurus:Floor_of_the_Mouth xref: SCTID:245786002 is_a: UBERON:0001444 ! subdivision of head is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0000165 ! mouth [Term] id: UBERON:0003680 name: posterior cruciate ligament xref: FMA:44617 xref: GAID:129 xref: galen:PosteriorCruciateLigament xref: MESH:A.02.513.514.600 xref: ncithesaurus:Posterior_Cruciate_Ligament is_a: UBERON:0003577 ! implied link automatically realized ! knee connective tissue is_a: UBERON:0006659 ! cruciate ligament is_a: UBERON:0008846 ! implied link automatically realized ! skeletal ligament relationship: part_of UBERON:0001485 ! knee joint [Term] id: UBERON:0003681 name: masticatory muscle def: "any of the muscles responsible for the movement of the jaws during mastication, including the masseter, temporal, and medial and lateral pterygoid muscles." [MP:0004234] comment: TODO synonym: "jaw muscle" EXACT [XAO:0003269] synonym: "masticatory muscles" EXACT [FMA:71437] synonym: "masticatory muscles set" EXACT [FMA:71437] xref: AAO:0000247 xref: FMA:74060 xref: GAID:145 xref: MESH:A.02.633.567.600 xref: XAO:0003269 is_a: UBERON:0002376 ! implied link automatically realized ! muscle of head [Term] id: UBERON:0003682 name: palatal muscle synonym: "muscle of palate" EXACT [FMA:46726] synonym: "palatal muscle" EXACT [FMA:46726] synonym: "palate muscle" EXACT [FMA:46726] synonym: "palatine muscle" EXACT [FMA:46726] xref: FMA:46726 xref: GAID:151 xref: MESH:A.02.633.567.750 xref: ncithesaurus:Palatal_Muscle xref: SCTID:244794002 is_a: UBERON:0002376 ! muscle of head [Term] id: UBERON:0003683 name: rotator cuff synonym: "musculotendinous cuff" EXACT [FMA:37018] synonym: "rotator cuff" EXACT [FMA:37018] synonym: "tendinous cuff" EXACT [FMA:37018] xref: FMA:37018 xref: GAID:160 xref: MESH:A.02.633.567.912 xref: ncithesaurus:Rotator_Cuff is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001467 ! shoulder [Term] id: UBERON:0003684 name: abdominal cavity def: "body cavity of the human body (and animal bodies) that holds the bulk of the viscera. It is located below (or inferior to) the thoracic cavity, and above the pelvic cavity. It is a part of the abdominopelvic cavity. Organs of the abdominal cavity include the stomach, liver, gallbladder, spleen, pancreas, small intestine, kidneys, and large intestine. The abdominal cavity is lined with a protective membrane termed the peritoneum. The kidneys are located in the abdominal cavity behind the peritoneum, in the retroperitoneum. The viscera are also covered, in the front, with a layer of peritoneum called the greater omentum (or omental apron)." [Wikipedia:Abdominal_cavity] synonym: "cavitas abdominis" RELATED [GAID:17] synonym: "cavity of abdominal compartment" EXACT [FMA:12266] synonym: "cavity of compartment of abdomen" EXACT [FMA:12266] synonym: "space of abdominal compartment" EXACT [FMA:12266] xref: EFO:0000213 xref: FMA:12266 xref: GAID:17 xref: galen:AbdominalCavity xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/Scheme_body_cavities-en.svg/200px-Scheme_body_cavities-en.svg.png xref: MESH:A.01.047.025 xref: ncithesaurus:Abdominal_Cavity xref: OpenCyc:Mx4rvZR1TJwpEbGdrcN5Y29ycA xref: SCTID:361294009 is_a: UBERON:0002323 ! body cavity relationship: part_of UBERON:0000916 ! abdomen [Term] id: UBERON:0003685 name: cranial suture def: "Fibrous joint in which the articulating bones or cartilages of the skull are connected by sutural ligaments (scant amount of collagenous dense connective tissue). Examples: sagittal suture, frontal suture." [FMA:71385, ISBN:3110148986, Wikipedia:Suture] subset: uberon_slim synonym: "cranium suture" EXACT [OBOL:automatic] synonym: "suture" EXACT [FMA:71385] synonym: "suture joint of skull" EXACT [SCTID:244509003] synonym: "suture of cranium" EXACT [OBOL:automatic] xref: FMA:7493 xref: GAID:211 xref: MA:0001475 xref: MESH:A.02.835.232.781.200 xref: SCTID:244509003 is_a: UBERON:0000032 ! implied link automatically realized ! cranial structure is_a: UBERON:0002209 ! implied link automatically realized ! fibrous joint is_a: UBERON:0009198 {source="GO"} ! craniofacial suture relationship: part_of UBERON:0003128 intersection_of: UBERON:0002209 ! fibrous joint intersection_of: part_of UBERON:0003128 ! cranium [Term] id: UBERON:0003686 name: tooth socket def: "Dental alveolus (plural, alveoli) are sockets in the jaws in which the roots of teeth are held in the alveolar process of maxilla with the periodontal ligament. The lay term for dental alveoli is tooth sockets. A joint that connect the roots of the teeth and the alveolus are called gomphosis (plural gomphoses). In mammals, tooth sockets are found in the maxilla and the mandible. [WP,unvetted]." [Wikipedia:Dental_alveolus] synonym: "alveolus dentali" RELATED [GAID:217] synonym: "alveolus dentalis" RELATED [GAID:217] synonym: "dental alveolus" RELATED [GAID:217] synonym: "dental alveolus" EXACT [FMA:57490] xref: FMA:57490 xref: GAID:217 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2e/Alveole_zahn.jpg/200px-Alveole_zahn.jpg xref: MESH:A.02.835.232.781.324.502.125.800 is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0004103 {source="MESH-modified"} ! alveolar ridge [Term] id: UBERON:0003687 name: foramen magnum def: "In anatomy, in the occipital bone, the foramen magnum is one of the several oval or circular apertures in the base of the skull, through which the medulla oblongata (an extension of the spinal cord) enters and exits the skull vault. Apart from the transmission of the medulla oblongata and its membranes, the foramen magnum transmits the Spinal Accessory nerve, vertebral arteries, the anterior and posterior spinal arteries, the membrana tectoria and alar ligaments. [WP,unvetted]." [Wikipedia:Foramen_magnum] subset: vertebrate_core xref: AAO:0010826 xref: FMA:75306 xref: GAID:228 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/39/Gray130.png/200px-Gray130.png xref: MESH:A.02.835.232.781.572.434 xref: ncithesaurus:Foramen_Magnum xref: OpenCyc:Mx4rwOm-FpwpEbGdrcN5Y29ycA xref: SCTID:244679008 xref: ZFA:0005387 is_a: UBERON:0005744 ! cranial conduit relationship: surrounded_by UBERON:0001676 ! occipital bone [Term] id: UBERON:0003688 name: omentum xref: EV:0100084 xref: FMA:14650 xref: GAID:23 xref: galen:Omentum xref: MESH:A.01.047.025.600.573 xref: ncithesaurus:Omentum xref: SCTID:362710002 is_a: UBERON:0000063 ! organ segment is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001178 ! visceral peritoneum [Term] id: UBERON:0003689 name: sella turcica def: "The sella turcica is a saddle-shaped depression in the sphenoid bone at the base of the human skull. [WP,unvetted]." [Wikipedia:Sella_turcica] xref: FMA:54709 xref: GAID:231 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/35/Gray145.png/200px-Gray145.png xref: MESH:A.02.835.232.781.802.662 xref: ncithesaurus:Sella_Turcica is_a: UBERON:0001677 ! sphenoid bone [Term] id: UBERON:0003690 name: sacrum def: "The sacrum is a large, triangular bone at the base of the spine and at the upper and back part of the pelvic cavity, where it is inserted like a wedge between the two hip bones. Its upper part connects with the last lumbar vertebra, and bottom part with the coccyx (tailbone). In children, it consists of usually five unfused vertebrae which begin to fuse between ages 16-18 and are usually completely fused into a single bone by age 26. It is curved upon itself and placed obliquely (that is, tilted forward). It is kyphotic — that is, concave facing forwards. The base projects forward as the sacral promontory internally, and articulates with the last lumbar vertebra to form the prominent sacrovertebral angle. The central part is curved outward towards the posterior, allowing greater room for the pelvic cavity. [WP,unvetted]." [Wikipedia:Sacrum] synonym: "os sacrum" RELATED [Wikipedia:Sacrum] synonym: "os sacrum [vertebrae sacrales i - v]" EXACT [FMA:16202, FMA:TA] synonym: "sacral bone" EXACT [FMA:16202] synonym: "sacrum [sacral vertebrae i - v]" EXACT [FMA:16202] synonym: "sacrum [sacral vertebrae I-V]" EXACT [FMA:16202] xref: AAO:0000552 xref: EFO:0003071 xref: FMA:16202 xref: GAID:241 xref: galen:Sacrum xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ec/Gray95.png/200px-Gray95.png xref: MESH:A.02.835.232.834.717 xref: ncithesaurus:Sacral_Bone xref: OpenCyc:Mx4rvmBKnJwpEbGdrcN5Y29ycA xref: SCTID:264186006 is_a: UBERON:0003828 ! implied link automatically realized ! abdominal segment bone is_a: UBERON:0004247 ! implied link automatically realized ! back bone is_a: UBERON:0005179 ! implied link automatically realized ! pelvis organ is_a: UBERON:0008001 {source="FMA"} ! irregular bone relationship: has_fused_element UBERON:0001094 ! sacral vertebra relationship: part_of UBERON:0001130 {source="FMA"} ! vertebral column relationship: part_of UBERON:0002090 ! postcranial axial skeleton relationship: part_of UBERON:0005473 {source="FMA"} ! sacral region [Term] id: UBERON:0003691 name: epidural space synonym: "extradural space" EXACT [FMA:71228] synonym: "spatium extradurale" EXACT [FMA:71228, FMA:TA] xref: FMA:71228 xref: GAID:243 xref: MESH:A.02.835.232.834.803.350 xref: SCTID:281866004 is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0003692 name: acromioclavicular joint def: "The acromioclavicular joint, or AC joint, is a joint at the top of the shoulder. It is the junction between the acromion (part of the scapula that forms the highest point of the shoulder) and the clavicle. [WP,unvetted]." [Wikipedia:Acromioclavicular_joint] xref: FMA:25898 xref: GAID:249 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Gray326.png/200px-Gray326.png xref: MESH:A.02.835.583.032 xref: ncithesaurus:Acromioclavicular_Joint xref: OpenCyc:Mx4rwHhmSJwpEbGdrcN5Y29ycA xref: SCTID:182166001 is_a: UBERON:0000982 ! skeletal joint is_a: UBERON:0001470 ! implied link automatically realized ! glenohumeral joint relationship: part_of UBERON:0001467 ! shoulder [Term] id: UBERON:0003693 name: retroperitoneal space def: "anatomical space in the abdominal cavity behind (retro) the peritoneum. It has no specific delineating anatomical structures. Organs are retroperitoneal if they only have peritoneum on their anterior side." [Wikipedia:Retroperitoneum] synonym: "retroperitoneum" EXACT [FMA:15080] xref: EFO:0002806 xref: FMA:15080 xref: GAID:25 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f2/Gray1126.png/200px-Gray1126.png xref: MESH:A.01.047.025.750 xref: ncithesaurus:Retroperitoneum xref: SCTID:243983004 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0003684 ! abdominal cavity [Term] id: UBERON:0003694 name: atlanto-axial joint synonym: "atlanto axial joint" RELATED [GAID:250] synonym: "atlantoaxial joint" RELATED [GAID:250] xref: FMA:25524 xref: GAID:250 xref: MESH:A.02.835.583.097 xref: ncithesaurus:Atlanto-axial_Joint xref: OpenCyc:Mx4rwUUIHpwpEbGdrcN5Y29ycA xref: SCTID:361832004 is_a: UBERON:0000982 ! skeletal joint [Term] id: UBERON:0003695 name: metacarpophalangeal joint def: "The metacarpophalangeal joints (MCP) are of the condyloid kind, formed by the reception of the rounded heads of the metacarpal bones into shallow cavities on the proximal ends of the first phalanges, with the exception of that of the thumb, which presents more of the characters of a ginglymoid joint. Arthritis of the MCP is a distinguishing feature of Rheumatoid Arthritis, as opposed to the distal interphalangeal joint in osteoarthritis. [WP,unvetted]." [Wikipedia:Metacarpophalangeal_joint] comment: we follow FMA in making these joints part of digits synonym: "metacarpal joint" EXACT [FMA:35246] synonym: "metacarpo-phalangeal joint" EXACT [MA:0000453] synonym: "mp joint" EXACT [FMA:35246] xref: EMAPA:19302 xref: FMA:35246 xref: GAID:255 xref: galen:MetacarpoPhalangealJoint xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/53/Gray337.png/200px-Gray337.png xref: MA:0000453 xref: MESH:A.02.835.583.345.512 xref: ncithesaurus:Metacarpophalangeal_Joint xref: OpenCyc:Mx4rwNt8wJwpEbGdrcN5Y29ycA xref: SCTID:280995004 is_a: UBERON:0001489 ! implied link automatically realized ! joint of hand relationship: attached_to UBERON:0002374 relationship: part_of UBERON:0002389 intersection_of: UBERON:0002217 ! synovial joint intersection_of: attached_to UBERON:0002374 ! metacarpal bone intersection_of: part_of UBERON:0002389 ! hand digit [Term] id: UBERON:0003696 name: metatarsophalangeal joint def: "The metatarsophalangeal articulations are the joints between the metatarsal bones of the foot and the proximal bones of the toes . They are condyloid joints meaning an elliptical or rounded surface (of the metatarsal bones) come close to the shallow cavities (of the proximal phalanges). The ligaments are the plantar and two collateral." [Wikipedia:Metatarsophalangeal_articulations] comment: we follow FMA in making these joints part of digits synonym: "metatarsal joint" EXACT [FMA:35222] synonym: "metatarsalphalangeal joint" RELATED [Wikipedia:Metatarsophalangeal_articulations] synonym: "metatarsophalangeal" RELATED [Wikipedia:Metatarsophalangeal_articulations] synonym: "metatarsophalangeal articulation" RELATED [Wikipedia:Metatarsophalangeal_articulations] xref: FMA:35222 xref: GAID:258 xref: galen:MetatarsoPhalangealJoint xref: MESH:A.02.835.583.378.531 xref: ncithesaurus:Metatarsophalangeal_Joint xref: OpenCyc:Mx4rwCtS0pwpEbGdrcN5Y29ycA xref: SCTID:239747005 is_a: UBERON:0001487 ! implied link automatically realized ! joint of foot relationship: attached_to UBERON:0001448 relationship: part_of UBERON:0001466 intersection_of: UBERON:0002217 ! synovial joint intersection_of: attached_to UBERON:0001448 ! metatarsal bone intersection_of: part_of UBERON:0001466 ! foot digit [Term] id: UBERON:0003697 name: abdominal wall synonym: "wall of abdomen" EXACT [FMA:259054] xref: FMA:10429 xref: FMA:259054 xref: GAID:26 xref: MESH:A.01.047.050 xref: ncithesaurus:Abdominal_Wall xref: SCTID:181613000 is_a: UBERON:0000060 ! anatomical wall relationship: part_of UBERON:0000916 intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0000916 ! abdomen [Term] id: UBERON:0003698 name: subtalar joint synonym: "articulatio subtalaris" EXACT [FMA:35198, FMA:TA] synonym: "subtalar joint" EXACT [FMA:35198] synonym: "talocalcaneal joint" RELATED [GAID:260] xref: FMA:35198 xref: GAID:260 xref: MESH:A.02.835.583.378.831.780 xref: ncithesaurus:Subtalar_Joint xref: SCTID:182213007 is_a: UBERON:0001487 ! joint of foot is_a: UBERON:0002217 ! synovial joint [Term] id: UBERON:0003699 name: pubic symphysis def: "the firm fibrocartilaginous joint in the median plane between the two opposing surfaces of the pubic bones, which are united by an interpubic disc of fibrocartilage as well as the superior and arcuate pubic ligaments." [MP:0009575, Wikipedia:Pubic_symphysis] comment: In birds, the pubic symphysis is present only in the ostrich, and the two hip bones are usually widely separated, making it easier to lay large eggs - Romer, Alfred Sherwood; Parsons, Thomas S. (1977). The Vertebrate Body. Philadelphia, PA: Holt-Saunders International. pp. 188–192. ISBN 0-03-910284-X. subset: organ_slim synonym: "pubic symphyse" RELATED [GAID:267] synonym: "symphisis pubis" RELATED [Wikipedia:Pubic_symphysis] synonym: "symphysis pubis" EXACT [FMA:16950] xref: FMA:16950 xref: GAID:267 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/51/Gray321.png/200px-Gray321.png xref: MESH:A.02.835.583.656 xref: OpenCyc:Mx4rwGw9npwpEbGdrcN5Y29ycA xref: SCTID:182200001 is_a: UBERON:0002216 {source="FMA"} ! symphysis is_a: UBERON:0005179 ! implied link automatically realized ! pelvis organ relationship: part_of UBERON:0002355 {source="FMA"} ! pelvis [Term] id: UBERON:0003700 name: temporomandibular joint def: "A joint of the jaw. There are two TMJs, one on either side, working in unison. The name is derived from the two bones which form the joint: the upper temporal bone which is part of the cranium (skull), and the lower jaw bone called the mandible. The unique feature of the TMJs is the articular disc. The disc is composed of fibrocartilagenous tissue (like the firm and flexible elastic cartilage of the ear) which is positioned between the two bones that form the joint. The TMJs are one of the only synovial joints in the human body with an articular disc, another being the sternoclavicular joint. The disc divides each joint into two. The lower joint compartment formed by the mandible and the articular disc is involved in rotational movement -- this is the initial movement of the jaw when the mouth opens. The upper joint compartment formed by the articular disk and the temporal bone is involved in translational movement -- this is the secondary gliding motion of the jaw as it is opened widely. The part of the mandible which mates to the under-surface of the disc is the condyle and the part of the temporal bone which mates to the upper surface of the disk is the glenoid (or mandibular) fossa[WP]." [Wikipedia:Temporomandibular_joint] synonym: "articulatio temporomandibularis" RELATED [Wikipedia:Temporomandibular_joint] synonym: "tempero-mandibular joint" RELATED [Wikipedia:Temporomandibular_joint] synonym: "temperomandibular joint" EXACT [HP:0010754] synonym: "temporalmandibular joint" RELATED [Wikipedia:Temporomandibular_joint] synonym: "temporomandibular" RELATED [Wikipedia:Temporomandibular_joint] synonym: "temporomandibular articulation" RELATED [Wikipedia:Temporomandibular_joint] synonym: "temporomandibular joint" RELATED [Wikipedia:Temporomandibular_joint] synonym: "TMJ" EXACT [BTO:0003674, Wikipedia:Temporomandibular_joint] xref: BTO:0003674 xref: EMAPA:19196 xref: FMA:54832 xref: GAID:272 xref: MA:0002899 xref: MESH:A.02.835.583.861 xref: SCTID:181814009 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0000982 ! skeletal joint relationship: part_of UBERON:0000165 ! mouth [Term] id: UBERON:0003701 name: achilles tendon def: "The Achilles tendon is a tendon of the posterior leg. It serves to attach the plantaris, gastrocnemius (calf) and soleus muscles to the calcaneus (heel) bone." [Wikipedia:Achilles_tendon] synonym: "achille's tendon" EXACT [] synonym: "calcaneal tendon" EXACT [FMA:51061] synonym: "tendo calcaneus" EXACT [MA:0002993] xref: FMA:51061 xref: GAID:277 xref: MA:0002993 xref: MESH:A.02.880.176 xref: ncithesaurus:Achilles_Tendon xref: OpenCyc:Mx4rvVjNX5wpEbGdrcN5Y29ycA xref: SCTID:181705009 is_a: UBERON:0000043 ! tendon is_a: UBERON:0004270 ! implied link automatically realized ! lower leg connective tissue is_a: UBERON:0008846 {source="FMA"} ! skeletal ligament relationship: part_of UBERON:0001665 {source="FMA"} ! triceps surae [Term] id: UBERON:0003702 name: inguinal canal def: "The inguinal canal is a passage in the anterior (toward the front of the body) abdominal wall which in men conveys the spermatic cord + the ilioinguinal nerve and in women the round ligament + the ilioinguinal nerve. The inguinal canal is larger and more prominent in men. [WP,unvetted]." [Wikipedia:Inguinal_canal] xref: EMAPA:19171 xref: EMAPA:26913 xref: FMA:19928 xref: GAID:28 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b4/Gray1227.png/200px-Gray1227.png xref: MESH:A.01.047.412 xref: SCTID:243966008 is_a: UBERON:0004111 ! anatomical conduit relationship: surrounded_by UBERON:0003697 {source="Wikipedia"} ! abdominal wall [Term] id: UBERON:0003703 name: extrahepatic bile duct def: "the passages external to the liver for the conveyance of bile." [MP:0009498] subset: vertebrate_core synonym: "bile duct extrahepatic part" RELATED [MA:0002659] synonym: "extrahepatic biliary system" RELATED [GAID:281] xref: FMA:14678 xref: GAID:281 xref: MA:0002659 xref: MESH:A.03.159.183.079 xref: ncithesaurus:Extrahepatic_Bile_Duct xref: SCTID:276158002 is_a: UBERON:0002394 ! bile duct relationship: spatially_disjoint_from UBERON:0002107 ! liver [Term] id: UBERON:0003704 name: intrahepatic bile duct def: "the passages within the liver for the conveyance of bile." [MP:0009497] subset: vertebrate_core synonym: "bile duct intrahepatic part" EXACT [MA:0001630] xref: FMA:15766 xref: GAID:287 xref: MA:0001630 xref: MESH:A.03.159.183.158 xref: ncithesaurus:Intrahepatic_Bile_Duct xref: SCTID:362193005 xref: ZFA:0005169 is_a: UBERON:0002394 ! bile duct relationship: part_of UBERON:0002107 ! liver [Term] id: UBERON:0003705 name: meckel's diverticulum def: "a small bulge in the small intestine present at birth. It is a vestigial remnant of the omphalomesenteric duct" [Wikipedia:Meckel's_diverticulum] synonym: "diverticulum of meckel" EXACT [FMA:14967] synonym: "ileal diverticulum" EXACT [FMA:14967] synonym: "meckel diverticulum" RELATED [GAID:317] synonym: "meckel's diverticulum" EXACT [FMA:14967] synonym: "meckels diverticulum" RELATED [GAID:317] xref: FMA:14967 xref: GAID:317 xref: galen:MeckelsDiverticulum xref: MESH:A.03.492.411.620.484.612 xref: ncithesaurus:Meckel_Diverticulum is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure is_a: UBERON:0006590 ! vestigial embryonic structure relationship: develops_from UBERON:0007105 {source="Wikipedia"} ! vitelline duct relationship: part_of UBERON:0002116 ! ileum [Term] id: UBERON:0003706 name: vocal cord def: "Either of two pairs of folds of mucous membrane projecting into the larynx." [Medical_Dictionary:http\://medical-dictionary.thefreedictionary.com/] synonym: "plica vocalis" RELATED [BTO:0005084] synonym: "Stimmband" RELATED [BTO:0005084] synonym: "Stimmlippe" RELATED [BTO:0005084] synonym: "true vocal cord" EXACT [FMA:55457] synonym: "vocal band" RELATED [BTO:0005084] synonym: "vocal chord" RELATED [BTO:0005084] synonym: "vocal cord" EXACT [FMA:55457] synonym: "vocal fold" RELATED [GAID:344] xref: BTO:0005084 xref: EMAPA:19181 xref: FMA:55457 xref: GAID:344 xref: MESH:A.04.329.364.737 xref: ncithesaurus:Vocal_Cord xref: OpenCyc:Mx4rvVieepwpEbGdrcN5Y29ycA xref: SCTID:245504003 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001737 {source="FMA"} ! larynx relationship: part_of UBERON:0002486 {source="BTO"} ! glottis [Term] id: UBERON:0003707 name: sinus of valsalva synonym: "aortic sinus" RELATED [GAID:472] synonym: "sinus of valsalva" EXACT [FMA:3745] synonym: "valsalva sinus" RELATED [GAID:472] xref: EMAPA:18625 xref: FMA:3745 xref: GAID:472 xref: MESH:A.07.231.114.056.847 is_a: UBERON:0000947 ! aorta relationship: part_of UBERON:0000947 ! aorta [Term] id: UBERON:0003708 name: carotid sinus def: "In human anatomy, the carotid sinus is a localized dilation of the internal carotid artery at its origin, the common carotid artery bifurcation. A synonym for the carotid sinus is the carotid bulb. [WP,unvetted]." [Wikipedia:Carotid_sinus] xref: EMAPA:19320 xref: FMA:50094 xref: GAID:482 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9c/Gray513.png/200px-Gray513.png xref: MESH:A.07.231.114.186.456 xref: SCTID:281137000 is_a: UBERON:0001530 ! common carotid artery [Term] id: UBERON:0003709 name: circle of Willis def: "a circle of arteries that supply blood to the brain. The Circle of Willis comprises the following arteries: Anterior cerebral artery (left and right); Anterior communicating artery; Internal carotid artery (left and right); Posterior cerebral artery (left and right); Posterior communicating artery (left and right).The basilar artery and middle cerebral arteries, supplying the brain, are also considered part of the circle" [Wikipedia:Circle_of_Willis] comment: In zebrafish, the circle of vessels comprised of the basal communicating artery (BCA) and posterior communicating segments (PCS) superficially resemble but are not homologous to the human circle of Willis[http://zfish.nichd.nih.gov/zfatlas/Intro%20Page/comparative.html]. Editor note: synonym: "arterial circle" BROAD [Wikipedia:Circle_of_Willis] synonym: "arterial circle of Willis" EXACT [] synonym: "cerebral arterial circle" RELATED [GAID:486] synonym: "Willis circle" RELATED [GAID:486] xref: EHDAA:9758 xref: EHDAA2:0000252 xref: FMA:50454 xref: GAID:486 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2e/Circle_of_Willis_en.svg/200px-Circle_of_Willis_en.svg.png xref: MESH:A.07.231.114.228.351 xref: OpenCyc:Mx4rwSrCwJwpEbGdrcN5Y29ycA xref: SCTID:362047009 is_a: UBERON:0004573 ! systemic artery relationship: overlaps UBERON:0007142 {source="FMA-modified"} ! left internal carotid artery relationship: overlaps UBERON:0007143 {source="FMA-modified"} ! right internal carotid artery [Term] id: UBERON:0003710 name: vasa vasorum xref: FMA:77433 xref: GAID:526 xref: MESH:A.07.231.836 xref: ncithesaurus:Vasa_Vasorum xref: SCTID:7524009 is_a: UBERON:0001981 ! blood vessel [Term] id: UBERON:0003711 name: brachiocephalic vein def: "The left and right brachiocephalic veins in the upper chest are formed by the union of each corresponding internal jugular vein and subclavian vein. This is at the level of the sternoclavicular joint. These great vessels merge to form the superior vena cava. The brachiocephalic veins are the major veins returning blood to the superior vena cava." [Wikipedia:Brachiocephalic_vein] synonym: "brachiocephalic venous tree" EXACT [FMA:4723] synonym: "innomiate vein" RELATED [Wikipedia:Brachiocephalic_vein] synonym: "innominate trunk" RELATED [Wikipedia:Brachiocephalic_vein] synonym: "innominate vein" RELATED [Wikipedia:Brachiocephalic_vein] synonym: "innominate vein" RELATED [GAID:529] synonym: "innominate vein" EXACT [FMA:4723] synonym: "innominate veins" RELATED [Wikipedia:Brachiocephalic_vein] synonym: "vena brachiocephalica" RELATED [Wikipedia:Brachiocephalic_vein] xref: EHDAA:9868 xref: EHDAA2:0000182 xref: FMA:4723 xref: GAID:529 xref: galen:BrachiocephalicVein xref: MESH:A.07.231.908.130 xref: ncithesaurus:Innominate_Vein xref: OpenCyc:Mx4rvz3aUJwpEbGdrcN5Y29ycA xref: SCTID:181371003 is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0007204 ! brachiocephalic vasculature [Term] id: UBERON:0003712 name: cavernous sinus xref: EMAPA:19059 xref: FMA:50772 xref: GAID:532 xref: MESH:A.07.231.908.224.334 xref: ncithesaurus:Cavernous_Sinus xref: OpenCyc:Mx4rwKAVGJwpEbGdrcN5Y29ycA xref: SCTID:244402005 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0003713 name: splenic vein def: "In anatomy, the splenic vein (in the past called the lienal vein) is the blood vessel that drains blood from the spleen. It joins with the superior mesenteric vein, to form the hepatic portal vein and follows a course superior to the pancreas, alongside of the similarly named artery, the splenic artery. It collects branches from the stomach and pancreas and most notably from the large intestine, which is drained by the inferior mesenteric vein and joins with splenic vein shortly before it forms the portal vein. [WP,unvetted]." [Wikipedia:Splenic_vein] xref: FMA:14331 xref: GAID:541 xref: galen:SplenicVein xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5b/Gray1189.png/200px-Gray1189.png xref: MESH:A.07.231.908.670.730 xref: ncithesaurus:Splenic_Vein xref: OpenCyc:Mx4rwCt0eZwpEbGdrcN5Y29ycA xref: SCTID:278029005 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0003714 name: neural tissue def: "Portion of tissue which consists of neurons, neuroglia and vasculature. Examples: Neural tissue of brain, neural tissue of peripheral ganglion, neural tissue of nerve[FMA]." [FMA:9642] comment: FMA definition includes vasculature synonym: "nerve tissue" EXACT [FMA:9642] synonym: "nervous tissue" EXACT [FMA:9642] synonym: "portion of neural tissue" EXACT [FMA:9642] xref: AAO:0000325 xref: AEO:0000123 xref: EHDAA2:0003123 xref: FMA:9642 xref: GAID:609 xref: MESH:A.08.561 xref: ncithesaurus:Nervous_Tissue xref: OpenCyc:Mx4rVmfYCsQ_QdeM_bFAeS8NRQ xref: SCTID:91728009 is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system is_a: UBERON:0000479 ! implied link automatically realized ! tissue relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0003715 name: splanchnic nerve def: "the major nerves supplying sympathetic innervation to the abdomen, including the greater, lesser, and lowest (or smallest) splanchnic nerves that are formed by preganglionic fibers from the spinal cord which pass through the paravertebral ganglia and then to the celiac ganglia and plexuses and the lumbar splanchnic nerves carry fibers which pass through the lumbar paravertebral ganglia to the mesenteric and hypogastric ganglia." [MP:0008318] xref: FMA:5883 xref: GAID:800 xref: MESH:A.08.800.050.050.800 xref: SCTID:264198001 is_a: UBERON:0001021 ! nerve relationship: part_of UBERON:0000013 ! sympathetic nervous system [Term] id: UBERON:0003716 name: recurrent laryngeal nerve synonym: "inferior laryngeal nerve" RELATED [GAID:804] xref: FMA:6246 xref: GAID:804 xref: MESH:A.08.800.050.050.925.450.700 xref: SCTID:24227007 is_a: UBERON:0002003 ! peripheral nerve relationship: branch_of UBERON:0001759 ! vagus nerve [Term] id: UBERON:0003717 name: golgi-mazzoni corpuscle synonym: "corpuscle of golgi-mazzoni" EXACT [FMA:83609] synonym: "golgi mazzoni corpuscle" RELATED [GAID:817] synonym: "golgi-mazzoni corpuscle" EXACT [FMA:83609] xref: FMA:83609 xref: GAID:817 xref: MESH:A.08.800.550.700.500.300 xref: SCTID:37419002 is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0003718 name: muscle spindle def: "the sensory organs in muscle that are involved in the stretch reflex." [MP:0004069] synonym: "muscle stretch receptor" RELATED [GAID:819] synonym: "neuromuscular spindle" RELATED [GAID:819] synonym: "neuromuscular spindle" EXACT [FMA:83607] xref: FMA:83607 xref: GAID:819 xref: MESH:A.08.800.550.700.500.500 xref: ncithesaurus:Muscle_Spindle xref: SCTID:12945004 is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0003719 name: pacinian corpuscle def: "any of the rapidly adapting mechanoreceptors found in subcutaneous tissue beneath both hairy and glabrous skin, and which normally contain an afferent nerve fiber surrounded by a capsule with multiple concentric layers." [MP:0000988, Wikipedia:Pacinian_corpuscle] xref: FMA:83604 xref: GAID:820 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Gray935.png/200px-Gray935.png xref: MESH:A.08.800.550.700.500.700 xref: NIF_Subcellular:FMA_83604 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0000010 ! peripheral nervous system [Term] id: UBERON:0003720 name: anterior cranial fossa def: "The floor of the anterior fossa is formed by the orbital plates of the frontal, the cribriform plate of the ethmoid, and the small wings and front part of the body of the sphenoid; it is limited behind by the posterior borders of the small wings of the sphenoid and by the anterior margin of the chiasmatic groove. The lesser wings of the sphenoid separate the anterior and middle fossae." [Wikipedia:Anterior_cranial_fossa] synonym: "anterior fossa" BROAD [] xref: FMA:9682 xref: GAID:83 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Gray193.png/200px-Gray193.png xref: MESH:A.01.456.830.150 xref: ncithesaurus:Anterior_Fossa is_a: UBERON:0004704 ! bone fossa is_a: UBERON:0008789 ! implied link automatically realized ! cranial fossa relationship: part_of UBERON:0003128 ! cranium [Term] id: UBERON:0003721 name: lingual nerve xref: FMA:53218 xref: GAID:835 xref: MESH:A.08.800.800.120.760.500.450 xref: SCTID:280260006 is_a: UBERON:0001021 ! nerve relationship: branch_of UBERON:0000375 ! mandibular nerve [Term] id: UBERON:0003722 name: middle cranial fossa def: "The compartment containing the anterior extremities and half the inferior surface of the temporal lobes (TEMPORAL LOBE) of the cerebral hemispheres. Lying posterior and inferior to the anterior cranial fossa (CRANIAL FOSSA, ANTERIOR), it is formed by part of the TEMPORAL BONE and SPHENOID BONE. It is separated from the posterior cranial fossa (CRANIAL FOSSA, POSTERIOR) by crests formed by the superior borders of the petrous parts of the temporal bones[MESH]. The middle fossa, deeper than the anterior cranial fossa, is narrow medially and widens laterally to the sides of the skull. It is separated from the posterior fossa by the clivus and the petrous crest. It is bounded in front by the posterior margins of the lesser wings of the sphenoid bone, the anterior clinoid processes, and the ridge forming the anterior margin of the chiasmatic groove; behind, by the superior angles of the petrous portions of the temporal bones and the dorsum sellC&; laterally by the temporal squamC&, sphenoidal angles of the parietals, and greater wings of the sphenoid. It is traversed by the squamosal, sphenoparietal, sphenosquamosal, and sphenopetrosal sutures[WP]." [MESH:A.01.456.830.165, Wikipedia:Middle_cranial_fossa] synonym: "middle fossa" BROAD [Wikipedia:Middle_cranial_fossa] xref: FMA:54369 xref: GAID:84 xref: MESH:A.01.456.830.165 xref: ncithesaurus:Middle_Fossa is_a: UBERON:0004704 ! bone fossa is_a: UBERON:0008789 ! implied link automatically realized ! cranial fossa relationship: part_of UBERON:0003128 ! cranium [Term] id: UBERON:0003723 name: vestibular nerve def: "The vestibular nerve is one of the two branches of the Vestibulocochlear nerve (the cochlear nerve being the other). It goes to the semicircular canals via the vestibular ganglion. It receives positional information. Axons of the vestibular nerve synapse in the vestibular nucleus on the lateral floor and wall of the fourth ventricle in the pons and medulla. It arises from bipolar cells in the vestibular ganglion, ganglion of Scarpa, which is situated in the upper part of the outer end of the internal auditory meatus. [WP,unvetted]." [Wikipedia:Vestibular_nerve] synonym: "scarpa ganglion" RELATED [GAID:840] synonym: "scarpa's ganglion" RELATED [GAID:840] synonym: "scarpas ganglion" RELATED [GAID:840] synonym: "vestibular root of acoustic nerve" EXACT [FMA:53401] synonym: "vestibular root of eighth cranial nerve" EXACT [FMA:53401] synonym: "vestibulocochlear VIII nerve vestibular component" EXACT [MA:0001111] xref: EHDAA2:0002200 xref: FMA:53401 xref: GAID:840 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/65/Vestibular_system%27s_semicircular_canal-_a_cross-section.jpg/200px-Vestibular_system%27s_semicircular_canal-_a_cross-section.jpg xref: MA:0001111 xref: MESH:A.08.800.800.120.910.900 xref: ncithesaurus:Vestibular_Nerve xref: OG:0001181 xref: OpenCyc:Mx4rvxAWX5wpEbGdrcN5Y29ycA xref: SCTID:362464003 is_a: UBERON:0001785 ! cranial nerve relationship: branch_of UBERON:0001648 ! vestibulocochlear nerve [Term] id: UBERON:0003724 name: musculocutaneous nerve def: "The musculocutaneous nerve arises from the lateral cord of the brachial plexus, opposite the lower border of the Pectoralis minor, its fibers being derived from C5, C6, C7. [WP,unvetted]." [Wikipedia:Musculocutaneous_nerve] synonym: "casserio's nerve" EXACT [FMA:37064] xref: FMA:37064 xref: GAID:844 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a7/Nerves_of_the_left_upper_extremity.gif/200px-Nerves_of_the_left_upper_extremity.gif xref: MESH:A.08.800.800.720.050.540 xref: OpenCyc:Mx4rvzp0l5wpEbGdrcN5Y29ycA xref: SCTID:181019000 is_a: UBERON:0002003 ! peripheral nerve [Term] id: UBERON:0003725 name: cervical plexus def: "The cervical plexus is a plexus of the ventral rami of the first four cervical spinal nerves which are located from C1 to C5 cervical segment in the neck. They are located laterally to the transverse processes between prevertebral muscles from the medial side and vertebral from lateral side. Here there is anastomosis with accessory nerve, hypoglossal nerve and sympathetic trunk. It is located in the neck, deep to sternocleidomastoid. Nerves formed from the cervical plexus innervate the back of the head, as well as some neck muscles. The branches of the cervical plexus emerge from the posterior triangle at the nerve point, a point which lies midway on the posterior border of the Sternocleidomastoid[WP]." [Wikipedia:Cervical_plexus] synonym: "cervical nerve plexus" EXACT [FMA:5904] synonym: "cervical plexus" EXACT [FMA:5904] synonym: "plexus cervicalis" EXACT [FMA:5904, FMA:TA] xref: FMA:5904 xref: GAID:847 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/20/Gray784.png/200px-Gray784.png xref: MESH:A.08.800.800.720.150 xref: OpenCyc:Mx4rvkEE3JwpEbGdrcN5Y29ycA xref: SCTID:181107005 is_a: UBERON:0001813 ! somatic nerve plexus [Term] id: UBERON:0003726 name: thoracic nerve def: "The twelve spinal nerves on each side of the thorax. They include eleven INTERCOSTAL NERVES and one subcostal nerve. Both sensory and motor, they supply the muscles and skin of the thoracic and abdominal walls." [MESH:A.08.800.800.720.800] synonym: "pectoral nerve" RELATED [GAID:857] synonym: "thoracic spinal nerve" EXACT [FMA:5860] xref: FMA:5860 xref: GAID:857 xref: MESH:A.08.800.800.720.800 xref: OpenCyc:Mx4rwSJp_ZwpEbGdrcN5Y29ycA xref: SCTID:360498003 is_a: UBERON:0001780 ! spinal nerve [Term] id: UBERON:0003727 name: intercostal nerve def: "The intercostal nerves are the anterior divisions (rami anteriores; ventral divisions) of the thoracic spinal nerves from T1 to T11. Each nerve is connected with the adjoining ganglion of the sympathetic trunk by a gray and a white ramus communicans. The intercostal nerves are distributed chiefly to the thoracic pleura and abdominal peritoneum and differ from the anterior divisions of the other spinal nerves in that each pursues an independent course without plexus formation. The first two nerves supply fibers to the upper limb in addition to their thoracic branches; the next four are limited in their distribution to the parietes of the thorax; the lower five supply the parietes of the thorax and abdomen. The 7th intercostal nerve terminates at the xyphoid process, at the lower end of the sternum. The 10th intercostal nerve terminates at the umbilicus. The twelfth thoracic is distributed to the abdominal wall and groin. [WP,unvetted]." [Wikipedia:Intercostal_nerves] synonym: "anterior ramus of thoracic nerve" EXACT [FMA:6028] synonym: "anterior ramus of thoracic spinal nerve" EXACT [FMA:6028] synonym: "ramus anterior, nervus thoracicus" EXACT [FMA:6028] synonym: "thoracic anterior ramus" EXACT [FMA:6028] synonym: "ventral ramus of thoracic spinal nerve" EXACT [FMA:6028] xref: EMAPA:18227 xref: FMA:6028 xref: GAID:858 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b1/Gray819.png/200px-Gray819.png xref: MESH:A.08.800.800.720.800.350 xref: ncithesaurus:Intercostal_Nerve xref: SCTID:279568001 is_a: UBERON:0001780 ! spinal nerve [Term] id: UBERON:0003728 name: mediastinum def: "The mediastinum is a non-delineated group of structures in the thorax, surrounded by loose connective tissue. It is the central compartment of the thoracic cavity. It contains the heart, the great vessels of the heart, esophagus, trachea, phrenic nerve, cardiac nerve, thoracic duct, thymus, and lymph nodes of the central chest. The mediastinum lies between the right and left pleura in and near the median sagittal plane of the chest. It extends from the sternum in front to the vertebral column behind, and contains all the thoracic viscera except the lungs. It may be divided for purposes of description into two parts:an upper portion, above the upper level of the pericardium, which is named the superior mediastinum with its superior limit at the superior thoracic opening and its inferior limit at the plane from the sternal angle to the disc of T4-T5 (Plane of Ludwig at Angle of Louis); and a lower portion, below the upper level of the pericardium. This lower portion is again subdivided into three parts, viz. that in front of the pericardium, the anterior mediastinum; that containing the pericardium and its contents, the middle mediastinum; and that behind the pericardium, the posterior mediastinum. It is surrounded by the chest wall anteriorly, the lungs laterally and the spine posteriorly. It is continuous with the loose connective tissue of the neck, and extends inferiorly onto the diaphragm." [Wikipedia:Mediastinum] synonym: "mediastinal part of chest" EXACT [FMA:9826] xref: EFO:0003057 xref: FMA:9826 xref: GAID:94 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ab/Mediastinum.png/200px-Mediastinum.png xref: MESH:A.01.911.800.500 xref: ncithesaurus:Mediastinum xref: OpenCyc:Mx4rv2OKJ5wpEbGdrcN5Y29ycA xref: SCTID:181217005 is_a: UBERON:0002224 ! thoracic cavity [Term] id: UBERON:0003729 name: mouth mucosa def: "the mucous membrane epithelium of the mouth. It can be divided into three categories: masticatory, lining, and specialized." [Wikipedia:Oral_mucosa] comment: ncit split mouth/oral mucosa into lip and buccal synonym: "adult mouth mucosa" EXACT [OBOL:automatic] synonym: "adult mouth mucosa of organ" EXACT [OBOL:automatic] synonym: "adult mouth mucous membrane" EXACT [OBOL:automatic] synonym: "adult mouth organ mucosa" EXACT [OBOL:automatic] synonym: "buccal mucosa" RELATED [GAID:951] synonym: "mouth mucosa" EXACT [FMA:59660] synonym: "mouth mucosa of organ" EXACT [OBOL:automatic] synonym: "mouth mucous membrane" EXACT [OBOL:automatic] synonym: "mouth organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of adult mouth" EXACT [OBOL:automatic] synonym: "mucosa of mouth" EXACT [OBOL:automatic] synonym: "mucosa of organ of adult mouth" EXACT [OBOL:automatic] synonym: "mucosa of organ of mouth" EXACT [OBOL:automatic] synonym: "mucosal lining of mouth" RELATED [MA:0002794] synonym: "mucous membrane of adult mouth" EXACT [OBOL:automatic] synonym: "mucous membrane of mouth" EXACT [FMA:59660] synonym: "oral mucosa" RELATED [GAID:951] synonym: "oral part of viscerocranial mucosa" EXACT [FMA:59660] synonym: "organ mucosa of adult mouth" EXACT [OBOL:automatic] synonym: "organ mucosa of mouth" EXACT [OBOL:automatic] synonym: "tunica mucosa oris" EXACT [FMA:59660, FMA:TA] xref: BTO:0002860 xref: FMA:59660 xref: GAID:951 xref: MA:0002794 xref: MESH:A.10.615.550.599 xref: ncithesaurus:Oral_Mucosa is_a: UBERON:0000344 ! implied link automatically realized ! mucosa is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0000165 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0000165 ! mouth [Term] id: UBERON:0003820 name: prostate bud def: "A region of the fetal urogenital sinus epithelium destined to become the prostate[GO]." [GO:0060513] comment: AR activation releases instructive signals from UGM that acts on UGS epithelium (UGE) to stimulate cell proliferation, form prostate ductal progenitors (prostatic buds), and regulate cell adhesion dynamics to permit prostatic bud outgrowth. There are three phases of prostatic budding: (1) the specification phase, when instructive developmental cues define where buds will form in the UGS, (2) the initiation phase, when prostatic buds begin to form, and (3) the elongation phase, when proliferation, cell adhesion, and cell migration coordinate outgrowth of prostatic buds into UGM. Timing of prostatic bud formation and the quantity and pattern of buds that are formed in the UGS are strictly regulated [3, 4]. The position of prostatic buds as they emerge from the UGS in utero determines the arrangement of prostate ducts in adulthood.[PMID:18977204] synonym: "prostate ductal progenitor" EXACT [PMID:18977204] synonym: "prostatic bud" EXACT [] is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005153 {source="GO:0060572"} ! epithelial bud is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue is_a: UBERON:0005911 ! implied link automatically realized ! endo-epithelium relationship: develops_from UBERON:0009847 {source="PMID:18977204"} ! prostate field relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0003821 name: metacarpal/metatarsal bone synonym: "cannon bone" NARROW SENSU [UBERON:cjm] synonym: "metacarpal or metatarsal bone" EXACT [] synonym: "metacarpal/metatarsal" EXACT [] synonym: "metapodium bone" EXACT [http://en.wiktionary.org/wiki/metapodial, UBERON:cjm] xref: MA:0000301 is_a: UBERON:0002495 ! long bone is_a: UBERON:0003606 ! implied link automatically realized ! limb long bone relationship: part_of UBERON:0002470 ! autopod [Term] id: UBERON:0003822 name: forelimb stylopod def: "A stylopod that is part of a forelimb [Obol]." [OBOL:automatic] comment: WP states: anatomical usage, the term arm refers specifically to the segment between the shoulder and the elbow, while the segment between the elbow and wrist is the forearm. However, in common, literary, and historical usage, arm refers to the entire upper limb from shoulder to wrist. FMA uses the term Arm for this class, so we place it here. // comment: todo - check fore propodium in AAO synonym: "arm" RELATED INCONSISTENT [FMA:24890] synonym: "brachial region" EXACT [] synonym: "forelimb stylopodium" EXACT [OBOL:automatic] synonym: "Proximal segment of free upper limb" EXACT [] synonym: "proximal segment of free upper limb" EXACT [] synonym: "regio brachialis" EXACT [FMA:24890, FMA:TA] synonym: "stylopod of arm" EXACT [] synonym: "stylopod of forelimb" EXACT [] synonym: "upper arm" EXACT [MA:0000035] xref: EHDAA:4186 xref: EHDAA:6234 xref: EHDAA2:0002112 xref: EMAPA:17424 xref: FMA:24890 xref: galen:Arm xref: MA:0000035 xref: MESH:A.01.378.800.075 xref: ncithesaurus:Arm xref: OG:0000343 xref: OpenCyc:Mx4rvVj0Z5wpEbGdrcN5Y29ycA xref: SCTID:302538001 is_a: UBERON:0002472 ! implied link automatically realized ! stylopod is_a: UBERON:0008785 ! implied link automatically realized ! upper limb segment relationship: part_of UBERON:0002102 intersection_of: UBERON:0002472 ! stylopod intersection_of: part_of UBERON:0002102 ! forelimb relationship: part_of UBERON:0001460 ! arm [Term] id: UBERON:0003823 name: hindlimb zeugopod def: "A zeugopod that is part of a hindlimb [Obol]." [OBOL:automatic] comment: note that FMA:24979 denotes the middle segment (zeugopod), its placement here is correct. See obo-anatomy archives for discussion synonym: "calf" NARROW [] synonym: "calf of leg" EXACT [FMA:24984] synonym: "crus" RELATED [] synonym: "crus of hindlimb" RELATED [] synonym: "hind limb middle limb segment" EXACT [OBOL:automatic] synonym: "hind limb zeugopod" EXACT [OBOL:automatic] synonym: "hindlimb middle limb segment" EXACT [OBOL:automatic] synonym: "hindlimb zeugopod" EXACT [OBOL:automatic] synonym: "hindlimb zeugopodium" EXACT [OBOL:automatic] synonym: "intermediate segment of free lower limb" EXACT [FMA:24979] synonym: "leg" RELATED INCONSISTENT [FMA:24979, MESH:A.01.378.610.500] synonym: "lower extremity middle limb segment" EXACT [OBOL:automatic] synonym: "lower extremity zeugopod" EXACT [OBOL:automatic] synonym: "lower leg" EXACT [] synonym: "middle limb segment of hind limb" EXACT [OBOL:automatic] synonym: "middle limb segment of hindlimb" EXACT [OBOL:automatic] synonym: "posterior curral region" EXACT [FMA:24984] synonym: "posterior leg region" EXACT [FMA:24984] synonym: "posterior part of leg" EXACT [FMA:24984] synonym: "posterior region of leg" EXACT [FMA:24984] synonym: "regio cruris posterior" EXACT [FMA:24984, FMA:TA] synonym: "regio surae" EXACT [FMA:24984, FMA:TA] synonym: "shank" RELATED [] synonym: "sura" EXACT [FMA:24984, FMA:TA] synonym: "sural region" EXACT [FMA:24984] synonym: "zeugopod of hind limb" EXACT [OBOL:automatic] synonym: "zeugopod of hindlimb" EXACT [OBOL:automatic] xref: EFO:0003051 xref: EHDAA:5165 xref: EHDAA:6190 xref: EHDAA2:0001030 xref: EMAPA:17496 xref: FMA:24979 xref: FMA:24984 xref: galen:Leg xref: MA:0000051 xref: MESH:A.01.378.610.500 xref: ncithesaurus:Leg xref: OG:0000348 xref: OpenCyc:Mx4rvczZBpwpEbGdrcN5Y29ycA xref: SCTID:244015008 is_a: UBERON:0002471 ! implied link automatically realized ! zeugopod is_a: UBERON:0008784 ! implied link automatically realized ! lower limb segment relationship: part_of UBERON:0002103 intersection_of: UBERON:0002471 ! zeugopod intersection_of: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0003824 name: thoracic segment nerve def: "A nerve that is part of a thorax [Obol]." [OBOL:automatic] synonym: "nerve of thorax" EXACT [OBOL:automatic] synonym: "thorax nerve" EXACT [OBOL:automatic] synonym: "upper body nerve" RELATED [MA:0000562] xref: MA:0000562 xref: MESH:A.08.800.800.720.800 is_a: UBERON:0003439 ! implied link automatically realized ! trunk nerve relationship: part_of UBERON:0000915 intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0000915 ! thoracic segment of trunk [Term] id: UBERON:0003825 name: abdominal segment nerve def: "A nerve that is part of an abdominal segment of trunk [Obol]." [OBOL:automatic] synonym: "abdominal segment of trunk nerve" EXACT [OBOL:automatic] synonym: "nerve of abdominal segment of trunk" EXACT [OBOL:automatic] xref: MA:0000528 is_a: UBERON:0003439 ! implied link automatically realized ! trunk nerve relationship: part_of UBERON:0002417 intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0002417 ! abdominal segment of trunk [Term] id: UBERON:0003826 name: upper leg bone def: "A bone that is part of a hindlimb stylopod [Obol]." [OBOL:automatic] xref: MA:0000682 is_a: UBERON:0003464 ! implied link automatically realized ! hindlimb bone relationship: part_of UBERON:0000376 intersection_of: UBERON:0001474 ! bone intersection_of: part_of UBERON:0000376 ! hindlimb stylopod [Term] id: UBERON:0003827 name: thoracic segment bone def: "A bone that is part of a thorax [Obol]." [OBOL:automatic] synonym: "bone of thorax" EXACT [OBOL:automatic] synonym: "bone organ of thorax" EXACT [OBOL:automatic] synonym: "thorax bone" EXACT [OBOL:automatic] synonym: "thorax bone organ" EXACT [OBOL:automatic] synonym: "upper body bone" RELATED [MA:0000559] xref: MA:0000559 xref: SCTID:426649006 is_a: UBERON:0003463 ! implied link automatically realized ! trunk bone is_a: UBERON:0005181 ! implied link automatically realized ! thoracic segment organ relationship: part_of UBERON:0000915 intersection_of: UBERON:0001474 ! bone intersection_of: part_of UBERON:0000915 ! thoracic segment of trunk [Term] id: UBERON:0003828 name: abdominal segment bone def: "A bone that is part of an abdominal segment of trunk [Obol]." [OBOL:automatic] synonym: "abdominal segment of trunk bone" EXACT [OBOL:automatic] synonym: "abdominal segment of trunk bone organ" EXACT [OBOL:automatic] synonym: "bone of abdominal segment of trunk" EXACT [OBOL:automatic] synonym: "bone organ of abdominal segment of trunk" EXACT [OBOL:automatic] xref: MA:0000525 is_a: UBERON:0003463 ! implied link automatically realized ! trunk bone is_a: UBERON:0005173 ! implied link automatically realized ! abdominal segment organ relationship: part_of UBERON:0002417 intersection_of: UBERON:0001474 ! bone intersection_of: part_of UBERON:0002417 ! abdominal segment of trunk [Term] id: UBERON:0003829 name: urethra muscle def: "A muscle organ that is part of a urethra [Obol]." [OBOL:automatic] synonym: "muscle organ of urethra" EXACT [OBOL:automatic] synonym: "urethra muscle organ" EXACT [OBOL:automatic] synonym: "urethral muscle layer" RELATED [MA:0002649] xref: MA:0002649 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001630 ! implied link automatically realized ! muscle organ is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0000057 intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0000057 ! urethra [Term] id: UBERON:0003830 name: thoracic segment muscle def: "A muscle organ that is part of a thorax [Obol]." [OBOL:automatic] synonym: "muscle organ of thorax" EXACT [OBOL:automatic] synonym: "thorax muscle organ" EXACT [OBOL:automatic] synonym: "upper body muscle" RELATED [MA:0000561] xref: MA:0000561 is_a: UBERON:0001774 ! implied link automatically realized ! muscle of trunk is_a: UBERON:0005181 ! implied link automatically realized ! thoracic segment organ relationship: part_of UBERON:0000915 intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0000915 ! thoracic segment of trunk [Term] id: UBERON:0003831 name: respiratory system muscle def: "A muscle organ that is part of a respiratory system [Obol]." [OBOL:automatic] synonym: "apparatus respiratorius muscle organ" EXACT [OBOL:automatic] synonym: "muscle organ of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "muscle organ of respiratory system" EXACT [OBOL:automatic] synonym: "respiratory system muscle organ" EXACT [OBOL:automatic] xref: MA:0001828 is_a: UBERON:0001630 ! implied link automatically realized ! muscle organ relationship: part_of UBERON:0001004 intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0003832 name: esophagus muscle def: "A muscle organ that is part of a esophagus [Obol]." [OBOL:automatic] comment: todo - split muscle vs muscle layer? MA subdivides into skeletal/smooth, wth smooth divided into circular and longitudinal synonym: "esophagus muscle organ" EXACT [OBOL:automatic] synonym: "gullet muscle organ" EXACT [OBOL:automatic] synonym: "muscle organ of esophagus" EXACT [OBOL:automatic] synonym: "muscle organ of gullet" EXACT [OBOL:automatic] synonym: "muscle organ of oesophagus" EXACT [OBOL:automatic] synonym: "oesophagus muscle organ" EXACT [OBOL:automatic] xref: FMA:62998 xref: MA:0002682 xref: SCTID:360961009 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003830 ! implied link automatically realized ! thoracic segment muscle is_a: UBERON:0005178 ! implied link automatically realized ! thoracic cavity organ relationship: part_of UBERON:0001043 intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0001043 ! esophagus relationship: part_of UBERON:0001096 {source="MA"} ! wall of esophagus [Term] id: UBERON:0003833 name: abdominal segment muscle def: "A muscle organ that is part of an abdominal segment of trunk [Obol]." [OBOL:automatic] synonym: "abdominal segment of trunk muscle organ" EXACT [OBOL:automatic] synonym: "muscle organ of abdominal segment of trunk" EXACT [OBOL:automatic] xref: MA:0000527 is_a: UBERON:0001774 ! implied link automatically realized ! muscle of trunk is_a: UBERON:0005173 ! implied link automatically realized ! abdominal segment organ relationship: part_of UBERON:0002417 intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0002417 ! abdominal segment of trunk [Term] id: UBERON:0003834 name: thoracic segment blood vessel def: "A blood vessel that is part of a thorax [Obol]." [OBOL:automatic] synonym: "blood vessel of thorax" EXACT [OBOL:automatic] synonym: "thorax blood vessel" EXACT [OBOL:automatic] synonym: "upper body blood vessel" RELATED [MA:0000558] xref: MA:0000558 is_a: UBERON:0003513 ! implied link automatically realized ! trunk blood vessel relationship: part_of UBERON:0000915 intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0000915 ! thoracic segment of trunk [Term] id: UBERON:0003835 name: abdominal segment blood vessel def: "A blood vessel that is part of an abdominal segment of trunk [Obol]." [OBOL:automatic] synonym: "abdominal segment of trunk blood vessel" EXACT [OBOL:automatic] synonym: "blood vessel of abdominal segment of trunk" EXACT [OBOL:automatic] xref: MA:0000524 is_a: UBERON:0003513 ! implied link automatically realized ! trunk blood vessel relationship: part_of UBERON:0002417 intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0002417 ! abdominal segment of trunk [Term] id: UBERON:0003836 name: abdominal segment skin def: "A skin of body that is part of an abdominal segment of trunk [Obol]." [OBOL:automatic] synonym: "abdominal segment of trunk skin" EXACT [OBOL:automatic] synonym: "skin of abdominal segment of trunk" EXACT [OBOL:automatic] xref: MA:0000530 is_a: UBERON:0001085 {source="MA"} ! skin of trunk relationship: part_of UBERON:0002417 intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0002417 ! abdominal segment of trunk relationship: part_of UBERON:0002417 {source="MA"} ! abdominal segment of trunk [Term] id: UBERON:0003837 name: thoracic segment connective tissue def: "A portion of connective tissue that is part of a thorax [Obol]." [OBOL:automatic] synonym: "connective tissue of thorax" EXACT [OBOL:automatic] synonym: "portion of connective tissue of thorax" EXACT [OBOL:automatic] synonym: "textus connectivus of thorax" EXACT [OBOL:automatic] synonym: "thorax connective tissue" EXACT [OBOL:automatic] synonym: "thorax portion of connective tissue" EXACT [OBOL:automatic] synonym: "thorax textus connectivus" EXACT [OBOL:automatic] synonym: "upper body connective tissue" RELATED [MA:0000560] xref: MA:0000560 is_a: UBERON:0003586 ! implied link automatically realized ! trunk connective tissue relationship: part_of UBERON:0000915 intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0000915 ! thoracic segment of trunk [Term] id: UBERON:0003838 name: abdominal segment connective tissue def: "A portion of connective tissue that is part of an abdominal segment of trunk [Obol]." [OBOL:automatic] synonym: "abdominal segment of trunk connective tissue" EXACT [OBOL:automatic] synonym: "abdominal segment of trunk portion of connective tissue" EXACT [OBOL:automatic] synonym: "abdominal segment of trunk textus connectivus" EXACT [OBOL:automatic] synonym: "connective tissue of abdominal segment of trunk" EXACT [OBOL:automatic] synonym: "portion of connective tissue of abdominal segment of trunk" EXACT [OBOL:automatic] synonym: "textus connectivus of abdominal segment of trunk" EXACT [OBOL:automatic] xref: MA:0000526 is_a: UBERON:0003586 ! implied link automatically realized ! trunk connective tissue relationship: part_of UBERON:0002417 intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0002417 ! abdominal segment of trunk [Term] id: UBERON:0003839 name: forelimb joint def: "A limb joint that is part of a forelimb [Obol]." [OBOL:automatic] synonym: "anteriormost limb joint of limb" EXACT [OBOL:automatic] synonym: "anteriormost limb limb joint" EXACT [OBOL:automatic] synonym: "fore limb joint of limb" EXACT [OBOL:automatic] synonym: "fore limb limb joint" EXACT [OBOL:automatic] synonym: "forelimb joint of limb" EXACT [OBOL:automatic] synonym: "forelimb limb joint" EXACT [OBOL:automatic] synonym: "joint of limb of anteriormost limb" EXACT [OBOL:automatic] synonym: "joint of limb of fore limb" EXACT [OBOL:automatic] synonym: "joint of limb of forelimb" EXACT [OBOL:automatic] synonym: "joint of limb of superior member" EXACT [OBOL:automatic] synonym: "joint of limb of upper extremity" EXACT [OBOL:automatic] synonym: "limb joint of anteriormost limb" EXACT [OBOL:automatic] synonym: "limb joint of fore limb" EXACT [OBOL:automatic] synonym: "limb joint of forelimb" EXACT [OBOL:automatic] synonym: "limb joint of superior member" EXACT [OBOL:automatic] synonym: "limb joint of upper extremity" EXACT [OBOL:automatic] synonym: "superior member joint of limb" EXACT [OBOL:automatic] synonym: "superior member limb joint" EXACT [OBOL:automatic] synonym: "upper extremity joint of limb" EXACT [OBOL:automatic] synonym: "upper extremity limb joint" EXACT [OBOL:automatic] xref: EMAPA:19204 xref: MA:0000614 is_a: UBERON:0003657 ! implied link automatically realized ! limb joint relationship: part_of UBERON:0002102 intersection_of: UBERON:0003657 ! limb joint intersection_of: part_of UBERON:0002102 ! forelimb [Term] id: UBERON:0003840 name: hindlimb joint def: "A limb joint that is part of a hindlimb [Obol]." [OBOL:automatic] synonym: "hind limb joint of limb" EXACT [OBOL:automatic] synonym: "hind limb limb joint" EXACT [OBOL:automatic] synonym: "hindlimb joint of limb" EXACT [OBOL:automatic] synonym: "hindlimb limb joint" EXACT [OBOL:automatic] synonym: "inferior member joint of limb" EXACT [OBOL:automatic] synonym: "inferior member limb joint" EXACT [OBOL:automatic] synonym: "joint of limb of hind limb" EXACT [OBOL:automatic] synonym: "joint of limb of hindlimb" EXACT [OBOL:automatic] synonym: "joint of limb of inferior member" EXACT [OBOL:automatic] synonym: "joint of limb of lower extremity" EXACT [OBOL:automatic] synonym: "limb joint of hind limb" EXACT [OBOL:automatic] synonym: "limb joint of hindlimb" EXACT [OBOL:automatic] synonym: "limb joint of inferior member" EXACT [OBOL:automatic] synonym: "limb joint of lower extremity" EXACT [OBOL:automatic] synonym: "lower extremity joint of limb" EXACT [OBOL:automatic] synonym: "lower extremity limb joint" EXACT [OBOL:automatic] xref: MA:0000662 is_a: UBERON:0003657 ! implied link automatically realized ! limb joint relationship: part_of UBERON:0002103 intersection_of: UBERON:0003657 ! limb joint intersection_of: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0003841 name: autopod joint def: "A limb joint that is part of an autopod [Obol]." [OBOL:automatic] synonym: "autopod joint of limb" EXACT [OBOL:automatic] synonym: "autopod limb joint" EXACT [OBOL:automatic] synonym: "distal free limb segment joint of limb" EXACT [OBOL:automatic] synonym: "distal free limb segment limb joint" EXACT [OBOL:automatic] synonym: "joint of limb of autopod" EXACT [OBOL:automatic] synonym: "joint of limb of distal free limb segment" EXACT [OBOL:automatic] synonym: "limb joint of autopod" EXACT [OBOL:automatic] synonym: "limb joint of distal free limb segment" EXACT [OBOL:automatic] synonym: "paw joint" RELATED [MA:0002715] xref: MA:0002715 is_a: UBERON:0003657 ! implied link automatically realized ! limb joint relationship: part_of UBERON:0002470 intersection_of: UBERON:0003657 ! limb joint intersection_of: part_of UBERON:0002470 ! autopod [Term] id: UBERON:0003842 name: neural tube lumen alt_id: UBERON:0005713 comment: TODO - check synonym: "cavity of neural tube" EXACT [UBERON:cjm] synonym: "lumen of neural tube" EXACT [UBERON:cjm] synonym: "neural lumen" RELATED [EHDAA:2889] synonym: "neural tube neural lumen" EXACT [EHDAA2:0001269] xref: AAO:0011073 xref: EHDAA:2889 xref: EHDAA:914 xref: EHDAA2:0001269 xref: EMAPA:16167 xref: EMAPA:16533 xref: OG:0001119 xref: XAO:0000252 is_a: UBERON:0005082 ! implied link automatically realized ! tube lumen relationship: surrounded_by UBERON:0001049 intersection_of: UBERON:0000464 ! anatomical space intersection_of: surrounded_by UBERON:0001049 ! neural tube [Term] id: UBERON:0003843 name: tooth epithelium def: "Epithelium that is part of a developing tooth or dental organ." [ZFIN:curator] subset: vertebrate_core synonym: "dental epithelia" EXACT PLURAL [ZFA:0005134] synonym: "dental epithelium" EXACT [ZFA:0005134] xref: AAO:0011027 xref: BTO:0001723 xref: EMAPA:17922 xref: EMAPA:17943 xref: OG:0001443 xref: XAO:0003203 xref: ZFA:0005134 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0000483 {source="ZFA"} ! epithelium is_a: UBERON:0003929 ! implied link automatically realized ! gut epithelium is_a: UBERON:0004807 ! implied link automatically realized ! respiratory system epithelium is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue relationship: part_of UBERON:0005176 intersection_of: UBERON:0000483 {source="ZFA"} ! epithelium intersection_of: part_of UBERON:0005176 {source="BTO"} ! tooth enamel organ relationship: part_of UBERON:0005176 {source="BTO"} ! tooth enamel organ [Term] id: UBERON:0003844 name: upper eyelid epithelium def: "An epithelium that is part of a upper eyelid [Obol]." [OBOL:automatic] synonym: "epithelial tissue of superior eyelid" EXACT [OBOL:automatic] synonym: "epithelial tissue of upper eyelid" EXACT [OBOL:automatic] synonym: "epithelium of superior eyelid" EXACT [OBOL:automatic] synonym: "epithelium of upper eyelid" EXACT [OBOL:automatic] synonym: "superior eyelid epithelial tissue" EXACT [OBOL:automatic] synonym: "superior eyelid epithelium" EXACT [OBOL:automatic] synonym: "upper eyelid epithelial tissue" EXACT [OBOL:automatic] xref: EHDAA2:0002116 xref: EMAPA:17835 xref: OG:0000638 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium relationship: part_of UBERON:0001712 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001712 ! upper eyelid [Term] id: UBERON:0003845 name: lower eyelid epithelium def: "An epithelium that is part of a lower eyelid [Obol]." [OBOL:automatic] synonym: "epithelial tissue of inferior eyelid" EXACT [OBOL:automatic] synonym: "epithelial tissue of lower eyelid" EXACT [OBOL:automatic] synonym: "epithelium of inferior eyelid" EXACT [OBOL:automatic] synonym: "epithelium of lower eyelid" EXACT [OBOL:automatic] synonym: "inferior eyelid epithelial tissue" EXACT [OBOL:automatic] synonym: "inferior eyelid epithelium" EXACT [OBOL:automatic] synonym: "lower eyelid epithelial tissue" EXACT [OBOL:automatic] xref: EHDAA2:0001016 xref: EMAPA:17832 xref: OG:0000637 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium relationship: part_of UBERON:0001713 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001713 ! lower eyelid [Term] id: UBERON:0003846 name: thymus epithelium def: "the supporting framework of the thymus." [MP:0009544] synonym: "epithelial tissue of thymus" EXACT [OBOL:automatic] synonym: "epithelial tissue of thymus gland" EXACT [OBOL:automatic] synonym: "epithelium of thymus" EXACT [OBOL:automatic] synonym: "epithelium of thymus gland" EXACT [OBOL:automatic] synonym: "thymic epithelial tissue" EXACT [] synonym: "thymic epithelium" EXACT [BTO:0001836] synonym: "thymus epithelial tissue" EXACT [OBOL:automatic] synonym: "thymus gland epithelial tissue" EXACT [OBOL:automatic] synonym: "thymus gland epithelium" EXACT [OBOL:automatic] xref: BTO:0001836 xref: EHDAA2:0002019 xref: MA:0000768 xref: ncithesaurus:Thymic_Epithelial_Tissue xref: OG:0001426 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0005911 ! implied link automatically realized ! endo-epithelium relationship: part_of UBERON:0002370 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002370 ! thymus [Term] id: UBERON:0003847 name: thyroid artery def: "An artery that is part of a thyroid [Obol]." [OBOL:automatic] xref: AAO:0010490 xref: EHDAA:7372 xref: EHDAA2:0002029 xref: EMAPA:18622 xref: MA:0002066 xref: ncithesaurus:Thyroid_Artery xref: OG:0001366 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001637 ! implied link automatically realized ! artery is_a: UBERON:0005911 ! implied link automatically realized ! endo-epithelium relationship: part_of UBERON:0002046 intersection_of: UBERON:0001637 ! artery intersection_of: part_of UBERON:0002046 ! thyroid gland [Term] id: UBERON:0003848 name: gonadal vein def: "In medicine, gonadal vein refers to the blood vessel that carrying blood away from the gonad (testis, ovary) toward the heart. Females : ovarian vein Males : testicular vein [WP,unvetted]." [Wikipedia:Gonadal_vein] synonym: "gonad vein" EXACT [OBOL:automatic] synonym: "gonada vein" EXACT [OBOL:automatic] synonym: "vein of gonad" EXACT [OBOL:automatic] synonym: "vein of gonada" EXACT [OBOL:automatic] xref: EHDAA:8703 xref: EHDAA2:0000719 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/da/Gray1120.png/200px-Gray1120.png xref: OG:0001340 xref: OpenCyc:Mx4rvlWYh5wpEbGdrcN5Y29ycA xref: SCTID:278192008 is_a: UBERON:0001638 ! implied link automatically realized ! vein relationship: attached_to UBERON:0000991 intersection_of: UBERON:0001638 ! vein intersection_of: attached_to UBERON:0000991 ! gonad [Term] id: UBERON:0003849 name: mesencephalic neural crest subset: vertebrate_core synonym: "mesencephalic neural crest" EXACT [ZFA:0000935] synonym: "neural crest midbrain" EXACT [ZFA:0000935] xref: EFO:0003591 xref: EHDAA:360 xref: EHDAA2:0001101 xref: OG:0000796 xref: ZFA:0000935 is_a: UBERON:0002342 ! implied link automatically realized ! neural crest is_a: UBERON:0003099 {source="ZFA"} ! cranial neural crest relationship: develops_into UBERON:0001891 intersection_of: UBERON:0002342 ! neural crest intersection_of: develops_into UBERON:0001891 ! midbrain [Term] id: UBERON:0003850 name: telencephalon neural crest subset: vertebrate_core synonym: "neural crest telencephalon" EXACT [ZFA:0000812] xref: EFO:0003574 xref: EHDAA2:0001991 xref: OG:0000799 xref: ZFA:0000812 is_a: UBERON:0002342 ! implied link automatically realized ! neural crest relationship: develops_into UBERON:0001893 intersection_of: UBERON:0002342 ! neural crest intersection_of: develops_into UBERON:0001893 ! telencephalon [Term] id: UBERON:0003851 name: diencephalon neural crest synonym: "diencephalic neural crest" EXACT [ZFA:0000811] synonym: "neural crest diencephalon" EXACT [ZFA:0000811] xref: EFO:0003573 xref: OG:0000798 xref: ZFA:0000811 is_a: UBERON:0002342 ! implied link automatically realized ! neural crest relationship: develops_into UBERON:0001894 intersection_of: UBERON:0002342 ! neural crest intersection_of: develops_into UBERON:0001894 ! diencephalon [Term] id: UBERON:0003852 name: rhombencephalon neural crest subset: vertebrate_core synonym: "neural crest hindbrain" EXACT [ZFA:0007063] synonym: "rhombencephalic neural crest" EXACT [ZFA:0007063] xref: EHDAA:362 xref: EHDAA2:0001628 xref: OG:0001210 xref: ZFA:0007063 is_a: UBERON:0002342 ! implied link automatically realized ! neural crest relationship: develops_into UBERON:0002028 intersection_of: UBERON:0002342 ! neural crest intersection_of: develops_into UBERON:0002028 ! hindbrain [Term] id: UBERON:0003853 name: spinal cord neural crest xref: EHDAA:696 xref: EMAPA:16094 xref: EMAPA:16163 xref: EMAPA:16529 xref: EMAPA:16881 xref: OG:0001006 is_a: UBERON:0002342 ! implied link automatically realized ! neural crest relationship: develops_into UBERON:0002240 intersection_of: UBERON:0002342 ! neural crest intersection_of: develops_into UBERON:0002240 ! spinal cord [Term] id: UBERON:0003854 name: spinal cord neural plate synonym: "neural plate of spinal cord" EXACT [OBOL:automatic] xref: OG:0000439 xref: ZFA:0007021 is_a: UBERON:0003075 ! implied link automatically realized ! neural plate relationship: develops_from UBERON:0006241 intersection_of: UBERON:0003075 ! neural plate intersection_of: develops_from UBERON:0006241 ! future spinal cord relationship: develops_from UBERON:0006241 {source="ZFA"} ! future spinal cord [Term] id: UBERON:0003855 name: gonad mesenchyme def: "A mesenchyme that is part of a gonad [Obol]." [OBOL:automatic] synonym: "gonada mesenchyme" EXACT [OBOL:automatic] synonym: "mesenchyme of gonad" EXACT [OBOL:automatic] synonym: "mesenchyme of gonada" EXACT [OBOL:automatic] xref: EHDAA:5012 xref: EMAPA:16858 xref: EMAPA:17385 xref: OG:0001090 is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0000991 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0000991 ! gonad [Term] id: UBERON:0003856 name: dental mesenchyme def: "Mesenchyme enclosed by dental organ." [ZFIN:curator] subset: vertebrate_core synonym: "dentail organ mesenchyme" EXACT [OBOL:automatic] synonym: "enamel organ mesenchyme" EXACT [OBOL:automatic] synonym: "tooth enamel organ mesenchyme" EXACT [OBOL:automatic] synonym: "tooth mesenchyme" EXACT [OBOL:automatic] xref: EMAPA:17920 xref: EMAPA:17923 xref: EMAPA:17941 xref: EMAPA:17944 xref: OG:0001444 xref: ZFA:0005139 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0005253 {source="ZFA"} ! head mesenchyme is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue relationship: part_of UBERON:0005176 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0005176 ! tooth enamel organ relationship: part_of UBERON:0005176 {source="ZFA"} ! tooth enamel organ [Term] id: UBERON:0003857 name: upper eyelid mesenchyme def: "A mesenchyme that is part of a upper eyelid [Obol]." [OBOL:automatic] synonym: "mesenchyme of superior eyelid" EXACT [OBOL:automatic] synonym: "mesenchyme of upper eyelid" EXACT [OBOL:automatic] synonym: "superior eyelid mesenchyme" EXACT [OBOL:automatic] xref: EHDAA:9051 xref: EHDAA2:0002117 xref: OG:0001093 is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme relationship: part_of UBERON:0001712 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001712 ! upper eyelid [Term] id: UBERON:0003858 name: lower eyelid mesenchyme def: "A mesenchyme that is part of a lower eyelid [Obol]." [OBOL:automatic] synonym: "inferior eyelid mesenchyme" EXACT [OBOL:automatic] synonym: "mesenchyme of inferior eyelid" EXACT [OBOL:automatic] synonym: "mesenchyme of lower eyelid" EXACT [OBOL:automatic] xref: EHDAA:9045 xref: EHDAA2:0001017 xref: OG:0001036 is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme relationship: part_of UBERON:0001713 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001713 ! lower eyelid [Term] id: UBERON:0003859 name: forelimb mesenchyme def: "A mesenchyme that is part of a forelimb [Obol]." [OBOL:automatic] synonym: "anteriormost limb mesenchyme" EXACT [OBOL:automatic] synonym: "fore limb mesenchyme" EXACT [OBOL:automatic] synonym: "mesenchyme of anteriormost limb" EXACT [OBOL:automatic] synonym: "mesenchyme of fore limb" EXACT [OBOL:automatic] synonym: "mesenchyme of forelimb" EXACT [OBOL:automatic] synonym: "mesenchyme of superior member" EXACT [OBOL:automatic] synonym: "mesenchyme of upper extremity" EXACT [OBOL:automatic] synonym: "superior member mesenchyme" EXACT [OBOL:automatic] synonym: "upper extremity mesenchyme" EXACT [OBOL:automatic] synonym: "wing mesenchyme" NARROW SENSU [Geisha:syn] xref: OG:0001109 is_a: UBERON:0009749 ! implied link automatically realized ! limb mesenchyme relationship: part_of UBERON:0002102 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0002102 ! forelimb [Term] id: UBERON:0003860 name: hindlimb mesenchyme def: "A mesenchyme that is part of a hindlimb [Obol]." [OBOL:automatic] synonym: "hind limb mesenchyme" EXACT [OBOL:automatic] synonym: "inferior member mesenchyme" EXACT [OBOL:automatic] synonym: "lower extremity mesenchyme" EXACT [OBOL:automatic] synonym: "mesenchyme of hind limb" EXACT [OBOL:automatic] synonym: "mesenchyme of hindlimb" EXACT [OBOL:automatic] synonym: "mesenchyme of inferior member" EXACT [OBOL:automatic] synonym: "mesenchyme of lower extremity" EXACT [OBOL:automatic] xref: OG:0001074 is_a: UBERON:0009749 ! implied link automatically realized ! limb mesenchyme relationship: part_of UBERON:0002103 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0003861 name: vertebral arch def: "posterior part of a vertebra that consists of a pair of pedicles and a pair of laminae, and supports seven processes: four articular processes, two transverse processes one spinous process[WP]. ZFA: A neural arch encloses the neural canal and typically meets its partner to form a neural spine. The neural arch can be a replacement ossification of the basidorsal cartilage or can form directly in membrane bone." [Wikipedia:Vertebral_arch] subset: vertebrate_core synonym: "arch of vertebra" EXACT [FMA:11946] synonym: "arcus vertebra" EXACT [Wikipedia:Vertebral_arch] synonym: "arcus vertebrae" EXACT PLURAL [Wikipedia:Vertebral_arch] synonym: "arcus vertebrae (vertebralis)" EXACT [FMA:11946] synonym: "dorsal arcocentrum" EXACT [ZFA:0001066] synonym: "neural arch" EXACT [] synonym: "vertebra arch" EXACT [MA:0001453] synonym: "vertebra dorsal arch" RELATED [MA:0001453] synonym: "vertebra neural arch" EXACT [MA:0001453] xref: AAO:0000725 xref: EFO:0003618 xref: FMA:11946 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray82.png/200px-Gray82.png xref: MA:0001453 xref: ncithesaurus:Arch_of_the_Vertebra xref: OpenCyc:Mx4rwKYHvZwpEbGdrcN5Y29ycA xref: SCTID:317373001 xref: ZFA:0001066 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004247 ! implied link automatically realized ! back bone relationship: develops_from UBERON:0006063 ! cartilaginous neural arch relationship: part_of UBERON:0002412 ! vertebra [Term] id: UBERON:0003862 name: foot digit 4 phalanx def: "A phalanx that is part of a foot digit 4 [Obol]." [OBOL:automatic] synonym: "digit long bone of foot digit 4" EXACT [OBOL:automatic] synonym: "foot digit 4 digit long bone" EXACT [OBOL:automatic] synonym: "foot digit 4 long bone of digit" EXACT [OBOL:automatic] synonym: "fourth toe phalanx" EXACT [FMA:32901] synonym: "long bone of digit of foot digit 4" EXACT [OBOL:automatic] synonym: "phalanx of foot digit 4" EXACT [OBOL:automatic] synonym: "phalanx of fourth toe" EXACT [FMA:32901] xref: FMA:32901 xref: MA:0001384 xref: ncithesaurus:Foot_Digit_4_Phalanx xref: SCTID:361804008 is_a: UBERON:0001449 ! implied link automatically realized ! phalanx of toe relationship: part_of UBERON:0003634 intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003634 ! foot digit 4 [Term] id: UBERON:0003863 name: foot digit 5 phalanx def: "A phalanx that is part of a foot digit 5 [Obol]." [OBOL:automatic] synonym: "digit long bone of foot digit 5" EXACT [OBOL:automatic] synonym: "foot digit 5 digit long bone" EXACT [OBOL:automatic] synonym: "foot digit 5 long bone of digit" EXACT [OBOL:automatic] synonym: "little toe phalanx" EXACT [FMA:32902] synonym: "long bone of digit of foot digit 5" EXACT [OBOL:automatic] synonym: "phalanx of fifth digit of foot" EXACT [FMA:32902] synonym: "phalanx of fifth toe" EXACT [FMA:32902] synonym: "phalanx of foot digit 5" EXACT [OBOL:automatic] synonym: "phalanx of little toe" EXACT [FMA:32902] xref: FMA:32902 xref: MA:0001385 xref: ncithesaurus:Foot_Digit_5_Phalanx xref: SCTID:361806005 is_a: UBERON:0001449 ! implied link automatically realized ! phalanx of toe relationship: part_of UBERON:0003635 intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003635 ! foot digit 5 [Term] id: UBERON:0003864 name: middle phalanx of finger def: "A middle phalanx that is part of a finger [Obol]." [OBOL:automatic] synonym: "hand middle phalanx" EXACT [MA:0001394] synonym: "middle phalanx of hand" EXACT [] xref: FMA:75817 xref: MA:0001394 xref: ncithesaurus:Middle_Phalanx_of_the_Hand xref: SCTID:113223004 is_a: UBERON:0001436 ! phalanx of finger is_a: UBERON:0004301 ! implied link automatically realized ! middle phalanx relationship: part_of UBERON:0002389 intersection_of: UBERON:0004301 ! middle phalanx intersection_of: part_of UBERON:0002389 ! hand digit [Term] id: UBERON:0003865 name: distal phalanx of finger def: "A distal phalanx that is part of a finger [Obol]." [OBOL:automatic] synonym: "distal phalanx of hand" EXACT [] synonym: "hand distal phalanx" EXACT [MA:0001388] synonym: "terminal phalanx of hand" EXACT [UBERON:cjm] synonym: "ungual phalanx of hand" EXACT [http://www.medilexicon.com/medicaldictionary.php?t=67679] xref: FMA:75818 xref: MA:0001388 xref: ncithesaurus:Distal_Phalanx_of_Hand xref: SCTID:182001007 is_a: UBERON:0001436 ! phalanx of finger is_a: UBERON:0004300 ! implied link automatically realized ! distal phalanx relationship: part_of UBERON:0002389 intersection_of: UBERON:0004300 ! distal phalanx intersection_of: part_of UBERON:0002389 ! hand digit relationship: part_of UBERON:0009552 ! distal segment of hand digit [Term] id: UBERON:0003866 name: middle phalanx of toe def: "A middle phalanx that is part of a toe [Obol]." [OBOL:automatic] synonym: "foot middle phalanx" EXACT [MA:0001386] synonym: "middle phalanx of foot" EXACT [] xref: FMA:75829 xref: MA:0001386 xref: SCTID:83207005 is_a: UBERON:0001449 ! phalanx of toe is_a: UBERON:0004301 ! implied link automatically realized ! middle phalanx relationship: part_of UBERON:0001466 intersection_of: UBERON:0004301 ! middle phalanx intersection_of: part_of UBERON:0001466 ! foot digit [Term] id: UBERON:0003867 name: distal phalanx of toe def: "A distal phalanx that is part of a toe [Obol]." [OBOL:automatic] synonym: "distal phalanx of foot" EXACT [] synonym: "foot distal phalanx" EXACT [MA:0001380] synonym: "terminal phalanx of foot" EXACT [UBERON:cjm] synonym: "terminal phalanx of hindlimb" EXACT [UBERON:cjm] synonym: "ungual phalanx of foot" EXACT [http://www.medilexicon.com/medicaldictionary.php?t=67679] synonym: "ungual phalanx of hindlimb" EXACT [http://www.medilexicon.com/medicaldictionary.php?t=67679] xref: FMA:75830 xref: MA:0001380 xref: ncithesaurus:Distal_Phalanx_of_Foot xref: SCTID:361797001 is_a: UBERON:0001449 ! phalanx of toe is_a: UBERON:0004300 ! implied link automatically realized ! distal phalanx relationship: part_of UBERON:0001466 intersection_of: UBERON:0004300 ! distal phalanx intersection_of: part_of UBERON:0001466 ! foot digit relationship: part_of UBERON:0009553 ! distal segment of foot digit [Term] id: UBERON:0003868 name: proximal phalanx of toe def: "A proximal phalanx that is part of a toe [Obol]." [OBOL:automatic] synonym: "foot proximal phalanx" EXACT [MA:0001387] synonym: "proximal phalanx of foot" EXACT [] xref: FMA:75828 xref: MA:0001387 xref: ncithesaurus:Proximal_Phalanx_of_Foot xref: SCTID:85533000 is_a: UBERON:0001449 ! phalanx of toe is_a: UBERON:0004302 ! implied link automatically realized ! proximal phalanx relationship: part_of UBERON:0001466 intersection_of: UBERON:0004302 ! proximal phalanx intersection_of: part_of UBERON:0001466 ! foot digit [Term] id: UBERON:0003869 name: presumptive ganglion is_a: UBERON:0006598 ! implied link automatically realized ! presumptive structure relationship: develops_into UBERON:0000045 intersection_of: UBERON:0006598 ! presumptive structure intersection_of: develops_into UBERON:0000045 ! ganglion [Term] id: UBERON:0003874 name: presumptive ventricle is_obsolete: true [Term] id: UBERON:0003876 name: subdivision of hippocampus comment: do not include ABA:HIP synonym: "hippocampus region" RELATED [MA:0002428] synonym: "hippocampus subdivision" EXACT [FMA:74041] synonym: "subdivision of hippocampus" EXACT [] xref: FMA:74041 xref: MA:0002428 is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon relationship: part_of UBERON:0001954 ! Ammon's horn [Term] id: UBERON:0003881 name: CA1 field of hippocampus synonym: "CA1" EXACT [] synonym: "CA1 field" EXACT [] synonym: "CA1 field of hippocampus" EXACT [] synonym: "cornu ammonis 1" EXACT [NIF_GrossAnatomy:birnlex_1197] synonym: "hippocampus CA1" EXACT [] synonym: "prosubiculum = distal ca1" EXACT [NIF_GrossAnatomy:birnlex_1197] synonym: "regio i cornus ammonis" EXACT [FMA:74042, FMA:TA] synonym: "regio i hippocampi proprii" EXACT [FMA:74042, FMA:TA] synonym: "regio superior" EXACT [NIF_GrossAnatomy:birnlex_1197] synonym: "regio superior of the hippocampus" EXACT [FMA:74042] synonym: "region 1 of Ammon's horn" EXACT [] synonym: "region i of ammon's horn" EXACT [FMA:74042] synonym: "region i of hippocampus proper" EXACT [FMA:74042] xref: ABA:CA1 xref: EFO:0002454 xref: FMA:74042 xref: MA:0000950 xref: NIF_GrossAnatomy:birnlex_1197 is_a: UBERON:0003876 ! subdivision of hippocampus relationship: spatially_disjoint_from UBERON:0003882 {source="ABA"} ! CA2 field of hippocampus relationship: spatially_disjoint_from UBERON:0003883 {source="ABA"} ! CA3 field of hippocampus [Term] id: UBERON:0003882 name: CA2 field of hippocampus synonym: "CA2" EXACT [] synonym: "CA2 field" EXACT [] synonym: "CA2 field of hippocampus" EXACT [] synonym: "hippocampus CA2" EXACT [] synonym: "regio ii cornus ammonis" EXACT [FMA:74044, FMA:TA] synonym: "regio ii hippocampi proprii" EXACT [FMA:74044, FMA:TA] synonym: "region 2 of Ammon's horn" EXACT [] synonym: "region ii of ammon's horn" EXACT [FMA:74044] synonym: "region ii of hippocampus proper" EXACT [FMA:74044] xref: ABA:CA2 xref: EFO:0002455 xref: FMA:74044 xref: MA:0000951 xref: NIF_GrossAnatomy:birnlex_1362 is_a: UBERON:0003876 ! subdivision of hippocampus relationship: spatially_disjoint_from UBERON:0003881 {source="ABA"} ! CA1 field of hippocampus relationship: spatially_disjoint_from UBERON:0003883 {source="ABA"} ! CA3 field of hippocampus [Term] id: UBERON:0003883 name: CA3 field of hippocampus def: "Region III of hippocampus proper is a portion of the hippocampal formation. Region CA3 receives input along the mossy fibers from granule cells in the dentate gyrus (DG) and from projection cells in entorhinal cortex along the perforant path. The mossy fiber pathway terminates in stratum lucidum while the perforant path passes through stratum lacunosum and terminates in stratum moleculare. The inputs from the medial septum and diagonal band of Broca terminate in stratum radiatum, along with commisural connections from the contralateral hippocampus. The pyramidal cells in CA3 (of which there are approximately 200,000 in each hemisphere in the rat) send some axons back to the hilus, but the majority project to regions CA2 and CA1 (a pathway called the Schaffer collaterals), in addition to a significant number of connections that terminate within CA3 (called recurrent connections). Both the recurrent connections and the Schaffer collaterals terminate preferentially in the septal or dorsal direction from the originating cells. CA3 also sends a small set of output fibers to the lateral septum. The region is conventionally divided into 3 divisions. CA3a is the part of the cell band which is most distal from the dentate (and closest to CA1). CA3b is the middle part of the band nearest to the fimbria/fornix connection. CA3c is the most proximal to the dentate, inserting into the hilus. The region overall has been considered to be the 'pacemaker' of the hippocampus. In CA3 much of the synchronous bursing activity associated with interictal epileptiform activity appears to be generated. The excitatory collateral interconnectivity appears to be the property of CA3 most responsible for this. CA3, unlike other regions, has pyramidal cell axon collaterals ramifying extensively with local region and making excitatory contacts with neighbors. CA3 has been implicated in a number of working theories on memory and learning hippocampal processes. Oscillatory rhythms (10-30Hz) are cholinergically driven patterns that depend on coupling of interneurons and pyramidal cell axons via gap junctions as well as glutaminergic (excitatory) and GABAergic (inhibitory) synapses. Sharp EEG waves seen here are also implicated in memory consolidation." [Wikipedia:Region_III_of_hippocampus_proper] synonym: "CA3" EXACT [] synonym: "CA3 field" EXACT [] synonym: "CA3 field of hippocampus" EXACT [] synonym: "hippocampus CA3" EXACT [] synonym: "regio iii cornus ammonis" EXACT [FMA:74045, FMA:TA] synonym: "regio iii hippocampi proprii" EXACT [FMA:74045, FMA:TA] synonym: "regio inferior" EXACT [NIF_GrossAnatomy:birnlex_1204] synonym: "region 3 of Ammon's horn" EXACT [] synonym: "region iii of ammon's horn" EXACT [FMA:74045] synonym: "region iii of hippocampus proper" EXACT [FMA:74045] xref: ABA:CA3 xref: EFO:0002456 xref: FMA:74045 xref: MA:0000952 xref: NIF_GrossAnatomy:birnlex_1204 is_a: UBERON:0003876 ! subdivision of hippocampus relationship: spatially_disjoint_from UBERON:0003881 {source="ABA"} ! CA1 field of hippocampus relationship: spatially_disjoint_from UBERON:0003882 {source="ABA"} ! CA2 field of hippocampus [Term] id: UBERON:0003884 name: CA4 field of hippocampus comment: consider obsoleting. consider: CA3c, hilus synonym: "CA4" EXACT [] synonym: "CA4 field" EXACT [] synonym: "hippocampus CA4" EXACT [] synonym: "regio iv cornus ammonis" EXACT [FMA:75741, FMA:TA] synonym: "regio iv hippocampi proprii" EXACT [FMA:75741, FMA:TA] synonym: "region 4 of Ammon's horn" EXACT [] synonym: "region iv of ammon's horn" EXACT [FMA:75741] synonym: "region iv of hippocampus proper" EXACT [FMA:75741] xref: EFO:0002457 xref: FMA:75741 xref: MA:0000953 is_a: UBERON:0003876 ! subdivision of hippocampus [Term] id: UBERON:0003885 name: mesometrium def: "A mesentery that is part of a uterus [Obol]." [OBOL:automatic] synonym: "mesentery of uterus" RELATED [FMA:19816, http://www.vivo.colostate.edu/hbooks/pathphys/misc_topics/peritoneum.html, MA:0002931] xref: FMA:19816 xref: MA:0002931 xref: SCTID:250172001 is_a: UBERON:0001297 ! implied link automatically realized ! serosa of uterus is_a: UBERON:0002095 ! implied link automatically realized ! mesentery relationship: part_of UBERON:0000995 intersection_of: UBERON:0002095 ! mesentery intersection_of: part_of UBERON:0000995 ! uterus relationship: part_of UBERON:0000995 {source="MA"} ! uterus [Term] id: UBERON:0003886 name: body cavity precursor is_a: UBERON:0002553 ! implied link automatically realized ! anatomical cavity relationship: develops_into UBERON:0002323 intersection_of: UBERON:0002553 ! anatomical cavity intersection_of: develops_into UBERON:0002323 ! body cavity relationship: surrounded_by UBERON:0000926 ! mesoderm [Term] id: UBERON:0003887 name: intraembryonic coelom def: "In the development of the human embryo the intraembryonic coelom (or somatic coelom) is a portion of the conceptus forming in the mesoderm. During the second week of development, the lateral mesoderm splits into a dorsal somatic mesoderm (somatopleure) and a ventral splanchnic mesoderm (splanchnopleure). The resulting cavity between the somatopleure and splanchnopleure is called the intraembryonic coelom. This space will give rise to the thoracic and abdominal cavities. It briefly has a connection with the extraembryonic coelom[WP]." [Wikipedia:Intraembryonic_coelom] comment: TODO - add spatial relationships to halves of LPM. Note the OG places XAO and ZFA coelem terms here. Todo: check ZFA, which appears to be a structure present in adults synonym: "somatic coelom" EXACT [Wikipedia:Intraembryonic_coelom] xref: EHDAA:251 xref: EMAPA:16088 xref: ncithesaurus:Intraembryonic_Coelom xref: OG:0000316 is_a: UBERON:0003886 ! body cavity precursor relationship: develops_from UBERON:0003081 {source="Wikipedia"} ! lateral plate mesoderm [Term] id: UBERON:0003888 name: extraembryonic coelom def: "cavity between Heuser's membrane and the Trophoblast[WP]." [Wikipedia:Extraembryonic_coelom] synonym: "chorion cavity" EXACT [EHDAA2:0000246] synonym: "chorionic cavity" EXACT [EHDAA2:0000246] synonym: "exocoelomic cavity " RELATED [OG:0001671] synonym: "extraembryonic celom" EXACT [FMA:63943] synonym: "extraembryonic coelomic cavity" RELATED [OG:0001671] xref: EHDAA:146 xref: EHDAA2:0000246 xref: EMAPA:16081 xref: FMA:63943 xref: ncithesaurus:Extraembryonic_Coelom xref: OG:0001671 xref: SCTID:362843009 is_a: UBERON:0003886 ! body cavity precursor [Term] id: UBERON:0003889 name: fallopian tube def: "Two very fine tubes lined with ciliated epithelia, leading from the ovaries of female mammals into the uterus, via the utero-tubal junction[WP]. Embryos have two pairs of ducts to let gametes out of the body; one pair (the Mullerian ducts) develops in females into the Fallopian tubes, uterus and vagina, while the other pair (the Wolffian ducts) develops in males into the epididymis and vas deferens." [Wikipedia:Fallopian_tube] comment: http://en.wikipedia.org/wiki/Talk:Fallopian_tube#Homology subset: uberon_slim synonym: "fallopian tubes" RELATED [] synonym: "mammalian oviduct" EXACT [http://sourceforge.net/tracker/?func=detail&aid=3293337&group_id=36855&atid=440764] synonym: "OEC cell" RELATED [BTO:0002242] synonym: "oral epithelial cell" EXACT [BTO:0002242] synonym: "uterine tube" RELATED [] xref: BTO:0002242 xref: EFO:0000974 xref: EV:0100112 xref: FMA:18245 xref: GAID:365 xref: galen:FallopianTube xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/68/Scheme_female_reproductive_system-en.svg/200px-Scheme_female_reproductive_system-en.svg.png xref: MA:0000385 xref: MESH:A.05.360.319.114.373 xref: ncithesaurus:Fallopian_Tube xref: OpenCyc:Mx4rvViVeZwpEbGdrcN5Y29ycA xref: SCTID:181463001 is_a: UBERON:0000993 ! oviduct relationship: connects UBERON:0000995 ! uterus relationship: connects UBERON:0001179 ! peritoneal cavity relationship: develops_from UBERON:0003890 ! Mullerian duct relationship: part_of UBERON:0000474 ! female reproductive system relationship: part_of UBERON:0002355 ! pelvis [Term] id: UBERON:0003890 name: Mullerian duct alt_id: UBERON:0005318 def: "paired ducts of the embryo that run down the lateral sides of the urogenital ridge and terminate at the mullerian eminence in the primitive urogenital sinus. In the female, they will develop to form the fallopian tubes, uterus, and the upper portion of the vagina; in the male, they are lost. These ducts are made of tissue of mesodermal origin[WP]. develops either by lengthwise splitting of the archinephric duct (in chondrichthyans and some amphibians) or by a elongated invagination of the coelomic epithelium (other vertebrates) In males, the oviducts regress. The cranial end of the oviduct maintains an opening into the coelom (which primitively may have been the anteriormost coelomic funnels connecting the nephrocoel with the coelom). This opening is the ostium tubae[USM]." [GO:0061205, http://www.usm.maine.edu/bio/courses/bio205/bio205_26_sex.html, Wikipedia:Mullerian_duct] comment: Sertoli cells secrete anti-Mullerian hormone (AMH) inducing the demise of this duct synonym: "Müllerian duct" EXACT [] synonym: "paramesonephric duct" EXACT [EMAPA:27665] xref: AAO:0010141 xref: EHDAA2:0001399 xref: EMAPA:27665 xref: GAID:1309 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6d/Gray1109.png/200px-Gray1109.png xref: MESH:A.16.254.570 xref: ncithesaurus:Mullerian_Duct xref: OG:0001199 xref: SCTID:308802006 xref: XAO:0000330 is_a: UBERON:0000058 ! duct is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: develops_from UBERON:0000926 ! mesoderm [Term] id: UBERON:0003891 name: stroma def: "connective, non-functional supportive framework of a biological cell, tissue, or organ. Contrast with parenchyma." [Wikipedia:Stroma] xref: EMAPA:17602 xref: FMA:81494 xref: ncithesaurus:Stroma_Connective_Tissue is_a: UBERON:0002384 ! connective tissue [Term] id: UBERON:0003893 name: capsule def: "a cover or envelope partly or wholly surrounding a structure. Examples: egg shell, articular capsules, renal capsules[WP]." [Wikipedia:Capsule_(anatomy)] comment: see also: protective structure surrounding some species of bacteria and fungi. Note that FMA has classes such as Articular capsule that are not subtypes of Capsule (which is undefined in FMA). GO has 'capsule' which is a fungal structure, and 'external encapsulating structure' which is restricted to cells xref: EHDAA:4739 xref: EHDAA:9061 xref: FMA:85272 xref: galen:Capsule is_a: UBERON:0000158 ! membranous layer [Term] id: UBERON:0003894 name: liver primordium def: "A small endodermal thickening in the foregut adjacent to the transverse septum. Invaginates forming the hepatic diverticulum." [ISBN:3211492755] comment: Todo - check hepatic plate; check syns subset: vertebrate_core synonym: "embryological hepatic plate" EXACT [UBERON:cjm] synonym: "hepatic plate" RELATED [EHDAA2:0000744] synonym: "liver bud" RELATED INCONSISTENT [XAO:0003266, ZFA:0000124] synonym: "primordium of the liver" EXACT [ncithesaurus:Primordium_of_the_Liver] xref: AAO:0011058 xref: EFO:0003428 xref: EHDAA:973 xref: EHDAA2:0000744 xref: EMAPA:16847 xref: ncithesaurus:Hepatic_Cord xref: ncithesaurus:Primordium_of_the_Liver xref: XAO:0003266 xref: ZFA:0000124 is_a: UBERON:0001048 {source="XAO"} ! primordium relationship: develops_into UBERON:0002107 intersection_of: UBERON:0001048 ! primordium intersection_of: develops_into UBERON:0002107 ! liver disjoint_from: UBERON:0005452 ! hepatic plate relationship: develops_from UBERON:0001041 {source="XAO"} ! foregut relationship: part_of UBERON:0000925 {source="EHDAA2:0000572"} ! endoderm [Term] id: UBERON:0003895 name: hypaxial myotome region def: "Portion of myotome that is ventral to the horizontal septum" [ISBN10:0073040584] synonym: "body wall muscle" RELATED [XAO:0003228] synonym: "hypaxial myotome region" EXACT [ZFA:0001085] xref: ZFA:0001085 is_a: UBERON:0001134 ! skeletal muscle tissue is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue relationship: part_of UBERON:0003082 ! myotome [Term] id: UBERON:0003896 name: muscle of body wall def: "A muscle organ that is part of a body wall [Obol]." [OBOL:automatic] comment: TODO - check trunk vs wall of trunk. Check hypaxial myotome region synonym: "body wall muscle" EXACT [] synonym: "body wall muscle organ" EXACT [OBOL:automatic] synonym: "muscle organ of body wall" EXACT [OBOL:automatic] synonym: "muscle organ of Trunk wall" EXACT [OBOL:automatic] synonym: "muscle organ of Wall of trunk" EXACT [OBOL:automatic] synonym: "Trunk wall muscle organ" EXACT [OBOL:automatic] synonym: "wall muscle" RELATED [BTO:0001863] synonym: "Wall of trunk muscle organ" EXACT [OBOL:automatic] xref: ANISEED:1235296 xref: BTO:0001863 is_a: UBERON:0001774 ! implied link automatically realized ! muscle of trunk relationship: part_of UBERON:0000309 intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0000309 ! body wall relationship: develops_from UBERON:0003082 ! myotome [Term] id: UBERON:0003897 name: axial muscle def: "A skeletal muscle of the trunk or head." [] xref: EHDAA:5982 xref: EHDAA2:0000160 xref: EMAPA:18166 xref: EMAPA:18167 is_a: UBERON:0001134 ! skeletal muscle tissue union_of: UBERON:0003898 ! skeletal muscle of trunk union_of: UBERON:0003899 ! skeletal muscle of head [Term] id: UBERON:0003898 name: skeletal muscle of trunk def: "A skeletal muscle of the trunk." [] synonym: "skeletal muscle of torso" EXACT [OBOL:automatic] synonym: "skeletal muscle tissue of torso" EXACT [OBOL:automatic] synonym: "skeletal muscle tissue of trunk" EXACT [OBOL:automatic] synonym: "torso skeletal muscle" EXACT [OBOL:automatic] synonym: "torso skeletal muscle tissue" EXACT [OBOL:automatic] synonym: "trunk skeletal muscle" EXACT [OBOL:automatic] synonym: "trunk skeletal muscle tissue" EXACT [OBOL:automatic] xref: SCTID:244848007 is_a: UBERON:0003897 ! implied link automatically realized ! axial muscle relationship: part_of UBERON:0002100 intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: part_of UBERON:0002100 ! trunk [Term] id: UBERON:0003899 name: skeletal muscle of head def: "A skeletal muscle of the head." [] synonym: "adult head skeletal muscle" EXACT [OBOL:automatic] synonym: "adult head skeletal muscle tissue" EXACT [OBOL:automatic] synonym: "head skeletal muscle" EXACT [OBOL:automatic] synonym: "head skeletal muscle tissue" EXACT [OBOL:automatic] synonym: "skeletal muscle of adult head" EXACT [OBOL:automatic] synonym: "skeletal muscle tissue of adult head" EXACT [OBOL:automatic] synonym: "skeletal muscle tissue of head" EXACT [OBOL:automatic] xref: SCTID:244718003 is_a: UBERON:0003897 ! implied link automatically realized ! axial muscle relationship: part_of UBERON:0000033 intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: part_of UBERON:0000033 ! head [Term] id: UBERON:0003900 name: epaxial myotome region def: "Portion of myotome that is dorsal to the horizontal septum" [ISBN10:0073040584] synonym: "epaxial myotome regions" EXACT PLURAL [ZFA:0001084] xref: ZFA:0001084 is_a: UBERON:0001134 ! skeletal muscle tissue is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue relationship: part_of UBERON:0003082 ! myotome [Term] id: UBERON:0003901 name: horizontal septum def: "A logitudinal sheet of continuous connective tissue partition developing at the apex of the chevron-shaped myotome and separating dorsal (epaxial) and ventral (hypaxial) body wall muscle masses; each is destined to become, respectively, the epaxial and hyopaxial musculature." [ISBN10:0073040584, ZFA:0000671] synonym: "horizontal myoseptum" EXACT [ZFA:0000671] xref: EFO:0003555 xref: ZFA:0000671 is_a: UBERON:0003037 ! septum relationship: adjacent_to UBERON:0003895 ! hypaxial myotome region relationship: adjacent_to UBERON:0003900 ! epaxial myotome region [Term] id: UBERON:0003902 name: retinal neural layer def: "The layer of nerve cells in the retina[XAO]. The part of the retina that contains neurons and photoreceptor cells[GO]." [GO:0003407, XAO:0003216] comment: editor note - we follow ontologies such as FMA and ZFA in first dividing into pigmented and neural layers; the neural layers are further divided into 9 layers. Note that in MA this class is a leaf node. subset: vertebrate_core synonym: "neural layer of retina" EXACT [FMA:58628] synonym: "neural retina" EXACT [XAO:0003216, ZFA:0000046] synonym: "neural retinal epithelium" RELATED [MA:000027] synonym: "neuroretina" EXACT [ZFA:0000046] synonym: "stratum nervosum (retina)" EXACT [FMA:58628] xref: AAO:0011095 xref: BTO:0000929 xref: EHDAA:4763 xref: EHDAA2:0001253 xref: EMAPA:17171 xref: EMAPA:18590 xref: FMA:58628 xref: MA:0000277 xref: ncithesaurus:Neural_Retina xref: OG:0000535 xref: XAO:0003216 xref: ZFA:0000046 is_a: UBERON:0001781 ! implied link automatically realized ! layer of retina relationship: develops_from UBERON:0005425 intersection_of: UBERON:0001781 ! layer of retina intersection_of: develops_from UBERON:0005425 ! presumptive neural retina relationship: induced_by UBERON:0005426 ! lens vesicle [Term] id: UBERON:0003903 name: bursa of Fabricius def: "an epithelial and lymphoid organ that develops as a dorsal diverticulum of the proctadael region of the cloaca in birds. The luminal (interior) surface of the bursa is plicated with as many as 15 primary and 7 secondary plicae or folds. These plicae have hundreds of bursal follicles containing follicle-associated epithelial cells, lymphocytes, macrophages, and plasma cells. Lymphoid stem cells migrate from the fetal liver to the bursa during ontogeny. In the bursa, these stem cells acquire the characteristics of mature, immunocompetent B cells[WP]. The bursa is an organ found in birds involved in B cell differentiation[GO]." [GO:0048540, Wikipedia:Bursa_of_Fabricius] subset: organ_slim xref: BTO:0001699 xref: GAID:1205 xref: MESH:A.13.163 is_a: UBERON:0000062 ! organ [Term] id: UBERON:0003904 name: bursal plica def: "Follicle containing part of bursa of Fabricius. The luminal (interior) surface of the bursa is plicated with as many as 15 primary and 7 secondary plicae or folds. These plicae have hundreds of bursal follicles containing follicle-associated epithelial cells, lymphocytes, macrophages, and plasma cells. Lymphoid stem cells migrate from the fetal liver to the bursa during ontogeny. In the bursa, these stem cells acquire the characteristics of mature, immunocompetent B cells[WP]." [GOC:cjm] synonym: "bursal fold" EXACT [] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0003903 ! bursa of Fabricius [Term] id: UBERON:0003905 name: bursal follicle def: "Follicle within the plicae of bursa of Fabricius." [GOC:cjm] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0003904 ! bursal plica [Term] id: UBERON:0003906 name: cardiac jelly def: "Portion of extracellular matrix between the myocardium and the endocardium. The cardiac jelly plays a central role in the septation of the heart and comprises most of the thickness of the heart wall at early stages, but disappears as the heart differentiates." [ZFA:0001318] subset: vertebrate_core xref: EHDAA:1271 xref: EHDAA:1279 xref: EHDAA:1922 xref: EHDAA:1930 xref: EHDAA:426 xref: EHDAA:442 xref: EHDAA:450 xref: EHDAA:458 xref: EHDAA:466 xref: EHDAA:474 xref: EHDAA:772 xref: EHDAA:780 xref: EHDAA:788 xref: EHDAA:800 xref: EHDAA:808 xref: EHDAA2:0000212 xref: ncithesaurus:Cardiac_Jelly xref: OG:0000936 xref: XAO:0004120 xref: ZFA:0001318 is_a: UBERON:0000479 ! tissue relationship: adjacent_to UBERON:0002165 ! endocardium relationship: adjacent_to UBERON:0002349 ! myocardium [Term] id: UBERON:0003907 name: left atrioventricular canal xref: EHDAA:5336 xref: EHDAA2:0000935 xref: FMA:71123 is_a: UBERON:0002087 ! atrioventricular canal [Term] id: UBERON:0003908 name: right atrioventricular canal xref: EHDAA:5338 xref: EHDAA2:0001719 xref: FMA:71122 is_a: UBERON:0002087 ! atrioventricular canal [Term] id: UBERON:0003909 name: sinusoid def: "small blood vessel similar to a capillary but with a discontinuous endothelium. Sinusoids are found in the liver, lymphoid tissue, endocrine organs, and hematopoietic organs such as the bone marrow and the spleen. Sinusoids found within terminal villi of the placenta are not comparable to these; they possess a continuous endothelium and complete basal lamina[WP]." [Wikipedia:Sinusoid_(blood_vessel)] comment: the WP def seems to fit FMA:63198 discontinuous sinusoid (undefined). ZFA has ZFA:0005261 sinusoidal blood vessel endothelium - but not sinusoidal blood vessel subset: vertebrate_core synonym: "sinusoidal blood vessel" EXACT [] synonym: "sinusoidal blood vessel endothelium" EXACT [ZFA:0005261] xref: FMA:63131 xref: ZFA:0005261 is_a: UBERON:0001981 ! blood vessel [Term] id: UBERON:0003910 name: splenic sinusoid def: "wide vessels in the spleen that drain into trabecular veins[WP]." [Wikipedia:Red_pulp#Sinusoids] synonym: "sinusoidal blood vessel of spleen" EXACT [OBOL:automatic] xref: FMA:63199 xref: SCTID:9081000 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003497 ! implied link automatically realized ! abdomen blood vessel is_a: UBERON:0003909 ! sinusoid is_a: UBERON:0005911 ! implied link automatically realized ! endo-epithelium relationship: part_of UBERON:0001250 intersection_of: UBERON:0003909 ! sinusoid intersection_of: part_of UBERON:0001250 ! red pulp of spleen relationship: part_of UBERON:0001250 ! red pulp of spleen [Term] id: UBERON:0003911 name: choroid plexus epithelium def: "An epithelium that is part of a choroid plexus [Obol]." [OBOL:automatic] synonym: "chorioid plexus of cerebral hemisphere epithelial tissue" EXACT [OBOL:automatic] synonym: "chorioid plexus of cerebral hemisphere epithelium" EXACT [OBOL:automatic] synonym: "choroid plexus epithelial tissue" EXACT [OBOL:automatic] synonym: "epithelial tissue of chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic] synonym: "epithelial tissue of choroid plexus" EXACT [OBOL:automatic] synonym: "epithelium of chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic] synonym: "epithelium of choroid plexus" EXACT [] xref: FMA:242811 xref: MA:0000824 xref: ncithesaurus:Choroid_Plexus_Epithelium is_a: UBERON:0000483 ! epithelium is_a: UBERON:0005357 ! implied link automatically realized ! brain ependyma relationship: part_of UBERON:0001886 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001886 ! choroid plexus relationship: part_of UBERON:0001886 ! choroid plexus [Term] id: UBERON:0003912 name: chitinous tooth def: "tooth-like structure composed of chitin." [] is_a: UBERON:0003913 ! tooth-like structure [Term] id: UBERON:0003913 name: tooth-like structure def: "hard bony, calcareous, or chitinous organ found in the mouth or pharynx of an animal and used in procuring or masticating food." [GOC:cjm] comment: see dermal denticle subset: grouping_class synonym: "tooth-like organ" EXACT [GOC:cjm] xref: HAO:0001019 is_a: UBERON:0004765 ! skeletal element [Term] id: UBERON:0003914 name: epithelial tube def: "Epithelial tubes transport gases, liquids and cells from one site to another and form the basic structure of many organs and tissues, with tube shape and organization varying from the single-celled excretory organ in Caenorhabditis elegans to the branching trees of the mammalian kidney and insect tracheal system." [GO:0060562, PMID:12526790] xref: AEO:0000114 xref: EHDAA2:0003114 xref: FBbt:00007474 is_a: UBERON:0000025 ! tube is_a: UBERON:0000483 ! implied link automatically realized ! epithelium [Term] id: UBERON:0003915 name: endothelial tube def: "Any endothelium that has the quality of being cylindrical [Obol]." [OBOL:automatic] is_a: UBERON:0001986 ! implied link automatically realized ! endothelium is_a: UBERON:0003914 ! epithelial tube [Term] id: UBERON:0003916 name: fat pad def: "an accumulation of adipose tissue[GO]. An accumulation of adipose tissue (fat cells) enclosed in fibrous tissue[BTO]." [BTO:0000444, GO:0060613] comment: FMA says isa organ synonym: "fat body" RELATED [FMA:58616] xref: AAO:0000157 xref: BTO:0000444 xref: FMA:58616 xref: MA:0002481 xref: XAO:0003050 is_a: UBERON:0001013 ! adipose tissue [Term] id: UBERON:0003917 name: arthropod fat body def: "an insect gland dorsal to the insect gut, with a function analogous to that of the vertebrate liver. It is a storage organ for fats, glycogen and protein and is a major site of intermediary metabolism." [GO:0007503] subset: organ_slim synonym: "fat body" EXACT SENSU [FBbt:00005066] xref: BTO:0000442 xref: FBbt:00001704 xref: FBbt:00005066 xref: GAID:1213 xref: MESH:A.13.365 xref: MIAA:0000096 xref: TADS:0000321 xref: TGMA:0001856 is_a: UBERON:0000062 ! organ [Term] id: UBERON:0003918 name: kidney mesenchyme def: "Kidney mesenchyme is the tissue made up of loosely connected mesenchymal cells in the kidney[GO]." [GO:0072074] comment: check this synonym: "mesenchyme of kidney" EXACT [] is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme relationship: develops_into UBERON:0002113 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: develops_into UBERON:0002113 ! kidney [Term] id: UBERON:0003919 name: mesenchyme of adult kidney def: "A mesenchyme that is part of an adult mammalian kidney [Obol]." [OBOL:automatic] synonym: "adult mammalian kidney mesenchyme" EXACT [OBOL:automatic] synonym: "kidney stroma" EXACT [GO:0072072] synonym: "mesenchyme of adult mammalian kidney" EXACT [OBOL:automatic] synonym: "renal interstitium" EXACT [FMA:70983] synonym: "renal stroma" EXACT [FMA:70983] synonym: "stroma of kidney" EXACT [FMA:70983] xref: EMAPA:27690 xref: FMA:70983 is_a: UBERON:0003567 ! implied link automatically realized ! abdomen connective tissue is_a: UBERON:0003891 ! stroma is_a: UBERON:0005256 ! implied link automatically realized ! trunk mesenchyme is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0000082 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0000082 ! adult mammalian kidney [Term] id: UBERON:0003920 name: venous blood vessel synonym: "segment of venous tree organ" EXACT [FMA:86188] synonym: "venous tree organ segment" EXACT [FMA:86188] xref: FMA:86188 xref: MA:0000066 is_a: UBERON:0001981 ! blood vessel relationship: part_of UBERON:0004582 ! venous system [Term] id: UBERON:0003921 name: pancreas primordium def: "embryonic structure that develops into pancreatic bud." [http://en.wikipedia.org/wiki/Pancreas#Embryological_development] subset: vertebrate_core synonym: "pancreatic anlage" RELATED [] synonym: "pancreatic primordium" EXACT [] xref: EFO:0003434 xref: EHDAA:2163 xref: EHDAA2:0001382 xref: EMAPA:17066 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Gray982.png/200px-Gray982.png xref: XAO:0001101 xref: ZFA:0000254 is_a: UBERON:0001048 {source="Obol"} ! primordium relationship: develops_from UBERON:0000925 ! endoderm relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0007026 ! primitive gut [Term] id: UBERON:0003922 name: pancreatic bud def: "The embryonic pancreas develops from two separate anlagen in the foregut epithelium, one dorsal and two ventral pancreatic buds[PMID]. In humans, an embryonic structure that is an outgrowth of the duodenum during embryogenesis - joins together to form the adult pancreas[WP]." [PMID:16417468, Wikipedia:Pancreatic_bud] xref: EFO:0003470 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Gray982.png/200px-Gray982.png xref: ncithesaurus:Pancreatic_Bud xref: SCTID:360398004 xref: ZFA:0001390 is_a: UBERON:0005423 ! developing anatomical structure relationship: develops_from UBERON:0001041 {source="Wikipedia:Pancreas#Embryological_development"} ! foregut relationship: develops_from UBERON:0001555 ! digestive tract relationship: develops_from UBERON:0002114 {exception="zebrafish", source="Wikipedia:Pancreatic_bud"} ! duodenum relationship: develops_from UBERON:0003921 ! pancreas primordium relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0003923 name: dorsal pancreatic bud def: "pancreatic bud that gives rise to the accessory pancreatic duct." [Wikipedia:Pancreatic_bud] subset: vertebrate_core synonym: "dorsal pancreatic anlage" RELATED [] synonym: "pancreas primordium dorsal bud" EXACT [EHDAA2:0001384] synonym: "posterior pancreatic anlage" RELATED [] synonym: "posterior pancreatic bud" RELATED [] xref: AAO:0011031 xref: EFO:0003465 xref: EHDAA2:0001384 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Gray982.png/200px-Gray982.png xref: OG:0001428 xref: SCTID:361435005 xref: XAO:0000467 xref: ZFA:0001370 is_a: UBERON:0003922 ! pancreatic bud relationship: develops_from UBERON:0001045 {source="XAO"} ! midgut relationship: induced_by UBERON:0002328 {gci_filler="NCBITaxon:10088", gci_relation="part_of", source="PMID:16417468"} ! notochord relationship: induced_by UBERON:0005805 {gci_filler="NCBITaxon:10088", gci_relation="part_of", source="PMID:16417468"} ! dorsal aorta [Term] id: UBERON:0003924 name: ventral pancreatic bud def: "pancreatic bud that gives rise to the major pancreatic duct." [Wikipedia:Pancreatic_bud] comment: the ventral pancreas and liver are derived from a common precursor cell population[PMID:16417468]. TODO - add this relationship subset: vertebrate_core synonym: "anterior pancreatic anlage" RELATED [] synonym: "anterior pancreatic bud" RELATED [] synonym: "pancreas primordium ventral bud" EXACT [EHDAA2:0001387] synonym: "ventral pancreatic anlage" RELATED [] xref: AAO:0011111 xref: EFO:0003464 xref: EHDAA2:0001387 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Gray982.png/200px-Gray982.png xref: OG:0001429 xref: SCTID:361437002 xref: XAO:0001103 xref: ZFA:0001369 is_a: UBERON:0003922 ! pancreatic bud [Term] id: UBERON:0003925 name: photoreceptor inner segment layer subset: vertebrate_core synonym: "retina photoreceptor layer inner segment" EXACT [MA:0002471] xref: MA:0002471 xref: OG:0001172 xref: ZFA:0001465 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: adjacent_to UBERON:0001788 ! outer limiting layer of retina relationship: part_of UBERON:0001787 ! photoreceptor layer of retina [Term] id: UBERON:0003926 name: photoreceptor outer segment layer subset: vertebrate_core synonym: "retina photoreceptor layer outer segment" EXACT [MA:0002472] xref: MA:0002472 xref: OG:0001173 xref: ZFA:0001466 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: adjacent_to UBERON:0001782 ! pigmented layer of retina relationship: part_of UBERON:0001787 ! photoreceptor layer of retina [Term] id: UBERON:0003927 name: macula lagena def: "This term was obsoleted as it was previously defined midleadingly as 'A macula that is part of a cochlea'." [UBERON:cjm] is_obsolete: true [Term] id: UBERON:0003928 name: digestive system duct def: "A duct that is part of a digestive system [Obol]." [OBOL:automatic] synonym: "duct of digestive system" EXACT [OBOL:automatic] synonym: "duct of gastrointestinal system" EXACT [OBOL:automatic] synonym: "gastrointestinal system duct" EXACT [OBOL:automatic] xref: ZFA:0005162 is_a: UBERON:0000058 ! implied link automatically realized ! duct relationship: part_of UBERON:0001007 intersection_of: UBERON:0000058 ! duct intersection_of: part_of UBERON:0001007 ! digestive system [Term] id: UBERON:0003929 name: gut epithelium def: "An epithelium that is part of a digestive tract [Obol]." [OBOL:automatic] synonym: "digestive tract epithelial tissue" EXACT [OBOL:automatic] synonym: "digestive tract epithelium" EXACT [OBOL:automatic] synonym: "epithelial tissue of digestive tract" EXACT [OBOL:automatic] synonym: "epithelial tissue of gut" EXACT [OBOL:automatic] synonym: "epithelial tissue of lower gastrointestinal tract" EXACT [OBOL:automatic] synonym: "epithelium of digestive tract" EXACT [OBOL:automatic] synonym: "epithelium of gut" EXACT [OBOL:automatic] synonym: "epithelium of lower gastrointestinal tract" EXACT [OBOL:automatic] synonym: "gut epithelial tissue" EXACT [OBOL:automatic] synonym: "lower gastrointestinal tract epithelial tissue" EXACT [OBOL:automatic] synonym: "lower gastrointestinal tract epithelium" EXACT [OBOL:automatic] xref: BTO:0000956 xref: EHDAA2:0004567 xref: ncithesaurus:Gut_Epithelium xref: XAO:0003200 xref: ZFA:0005123 is_a: UBERON:0005911 ! implied link automatically realized ! endo-epithelium relationship: part_of UBERON:0001555 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001555 ! digestive tract [Term] id: UBERON:0003930 name: atrioventricular canal endocardium def: "An endocardium that is part of an atrioventricular canal [Obol]." [OBOL:automatic] synonym: "AV canal endocardium" EXACT [OBOL:automatic] synonym: "endocardium of atrioventricular canal" EXACT [OBOL:automatic] synonym: "endocardium of AV canal" EXACT [OBOL:automatic] xref: XAO:0004124 xref: ZFA:0001616 is_a: UBERON:0002165 ! implied link automatically realized ! endocardium relationship: part_of UBERON:0002087 intersection_of: UBERON:0002165 ! endocardium intersection_of: part_of UBERON:0002087 ! atrioventricular canal [Term] id: UBERON:0003931 name: diencephalic white matter def: "A white matter of neuraxis that is part of a diencephalon [Obol]." [OBOL:automatic] subset: vertebrate_core synonym: "diencephalic tract/commissure" EXACT [ZFA:0000338] xref: FMA:83931 xref: ZFA:0000338 is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter relationship: part_of UBERON:0001894 intersection_of: UBERON:0002316 ! white matter intersection_of: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0003932 name: chondrocranium cartilage def: "A cartilage that is part of a chondrocranium [Obol]." [OBOL:automatic] synonym: "cartilage of chondrocranium" EXACT [OBOL:automatic] synonym: "neurocranium cartilage" EXACT [ZFA:0001461] xref: EFO:0003690 xref: ZFA:0001461 is_a: UBERON:0003933 ! implied link automatically realized ! cranial cartilage relationship: part_of UBERON:0002241 intersection_of: UBERON:0002418 ! cartilage tissue intersection_of: part_of UBERON:0002241 ! chondrocranium [Term] id: UBERON:0003933 name: cranial cartilage def: "A cartilage that is part of a cranium [Obol]." [OBOL:automatic] synonym: "cartilage of cranium" EXACT [OBOL:automatic] synonym: "cranium cartilage" EXACT [OBOL:automatic] xref: ZFA:0001458 is_a: UBERON:0002418 ! implied link automatically realized ! cartilage tissue is_a: UBERON:0003566 ! implied link automatically realized ! head connective tissue relationship: part_of UBERON:0003128 intersection_of: UBERON:0002418 ! cartilage tissue intersection_of: part_of UBERON:0003128 ! cranium [Term] id: UBERON:0003934 name: mesenchyme pectoral fin def: "A mesenchyme that is part of a pectoral fin [Obol]." [OBOL:automatic] synonym: "mesenchyme of pectoral fin" EXACT [OBOL:automatic] synonym: "pectoral fin mesenchyme" EXACT [OBOL:automatic] xref: EFO:0003604 xref: ZFA:0001000 is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme relationship: part_of UBERON:0000151 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0000151 ! pectoral fin [Term] id: UBERON:0003935 name: mesenchyme pelvic fin def: "A mesenchyme that is part of a pelvic fin [Obol]." [OBOL:automatic] synonym: "mesenchyme of pelvic fin" EXACT [OBOL:automatic] synonym: "pelvic fin mesenchyme" EXACT [OBOL:automatic] xref: ZFA:0001449 is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme relationship: part_of UBERON:0000152 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0000152 ! pelvic fin [Term] id: UBERON:0003936 name: postoptic commissure synonym: "POC" EXACT [ZFA:0000059] synonym: "post optic commissure" EXACT [ZFA:0000059] synonym: "post-optic commissure" EXACT [ZFA:0000059] xref: EFO:0003478 xref: ZFA:0000059 is_a: UBERON:0001020 ! commissure is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon is_a: UBERON:0005970 ! implied link automatically realized ! brain commissure relationship: part_of UBERON:0003931 ! diencephalic white matter [Term] id: UBERON:0003937 name: sex gland def: "any of the organized aggregations of cells that function as secretory or excretory organs and are associated with reproduction" [MP:0000653] subset: organ_slim synonym: "genitalia gland" EXACT [OBOL:automatic] synonym: "gland of genitalia" EXACT [OBOL:automatic] synonym: "gland of reproductive system" EXACT [OBOL:automatic] synonym: "reproductive gland" EXACT [MA:0001751] synonym: "reproductive system gland" EXACT [OBOL:automatic] xref: MA:0001751 is_a: UBERON:0002530 ! gland is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0000990 intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0000990 ! reproductive system [Term] id: UBERON:0003938 name: sensory dissociation area def: "the area of the parietal lobe that integrates tactile and visual stimuli" [MP:0000796] is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001872 ! parietal lobe [Term] id: UBERON:0003939 name: transverse gyrus of Heschl def: "the area of the temporal lobe concerned with hearing[MP]. The transverse temporal gyri (also called Heschl's gyri or Heschl's convolutions) are found in the area of primary auditory cortex in the superior temporal gyrus of the human brain, occupying Brodmann areas 41 and 42. It is the first cortical structure to process incoming auditory information. Anatomically, the transverse temporal gyri are distinct in that they run mediolaterally (towards the center of the brain) rather than dorsiventrally (front to back) as all other temporal lobe gyri run. The Heschl's gyri are named after Richard L. Heschl." [MP:0000803, Wikipedia:Transverse_temporal_gyrus] is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0001393 ! auditory cortex relationship: part_of UBERON:0001871 ! temporal lobe [Term] id: UBERON:0003941 name: cerebellum anterior vermis def: "the anterior portion of the narrow middle zone between the two hemispheres of the cerebellum that is located anterior to the primary fissure" [MP:0000867] synonym: "anterior cerebellum vermis" EXACT [MA:0002969] synonym: "anterior vermis of cerebellum" EXACT [FMA:72255] synonym: "part of vermal region" EXACT [FMA:72255] synonym: "vermis of anterior lobe" EXACT [FMA:72255] synonym: "vermis of anterior lobe of cerebellum" EXACT [FMA:72255] xref: FMA:72255 xref: MA:0002969 xref: NIF_GrossAnatomy:birnlex_1185 is_a: UBERON:0004720 ! cerebellar vermis relationship: part_of UBERON:0002131 ! anterior lobe of cerebellum [Term] id: UBERON:0003942 name: somatic sensory system def: "the neural tissue involved in the transmission of sensory signals" [MP:0000959] comment: TODO - check is_a: UBERON:0001032 ! implied link automatically realized ! sensory system is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0000012 intersection_of: UBERON:0001032 ! sensory system intersection_of: part_of UBERON:0000012 ! somatic nervous system [Term] id: UBERON:0003943 name: fourth lumbar dorsal root ganglion def: "the group of nerve cell bodies located on the dorsal spinal roots within the vertebral column at the level of the fourth lumbar vertebra" [MP:0001019] subset: defined_by_ordinal_series synonym: "forth lumbar dorsal root ganglion" EXACT [NIF_GrossAnatomy:birnlex_2626] synonym: "fourth lumbar dorsal root ganglion" EXACT [UBERON:cjm] synonym: "fourth lumbar spinal ganglion" EXACT [FMA:6338] synonym: "L4 dorsal root ganglion" EXACT [MP:0001019] xref: EMAPA:25167 xref: FMA:6338 xref: NIF_GrossAnatomy:birnlex_2626 is_a: UBERON:0002836 {source="FMA"} ! lumbar dorsal root ganglion [Term] id: UBERON:0003945 name: somatic motor system def: "the neural tissue involved in the transmission of motor signals" [MP:0001051] is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0000012 ! somatic nervous system [Term] id: UBERON:0003946 name: placenta labyrinth def: "the placental layers where embryonic blood vessels are surrounded by trophoblast cells and maternal blood" [MP:0001716] synonym: "labyrinthine layer" EXACT [GO:0060713] synonym: "labyrinthine layer of placenta" EXACT [GO:0060713] synonym: "placental labyrinth" EXACT [] is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0001987 ! placenta [Term] id: UBERON:0003947 name: brain ventricle/choroid plexus def: "the brain ventricles or their associated choroid plexuses" [MP:0002200] comment: TODO - check relationship between CP and BV. If this is part of then this class should be obsoleted is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain union_of: UBERON:0001886 ! choroid plexus union_of: UBERON:0004086 ! brain ventricle relationship: part_of UBERON:0000955 ! brain [Term] id: UBERON:0003948 name: blood-air barrier def: "the membrane between the capillary blood and alveolar air, comprised of the alveolar epithelium and the capillary epithelium and their adherent basement membranes and epithelial cell cytoplasm" [MP:0002324] comment: TODO - alveolar lumen xref: MESH:A.04.411.715.025 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000119 ! cell layer relationship: adjacent_to UBERON:0000178 ! blood relationship: part_of UBERON:0002048 ! lung [Term] id: UBERON:0003949 name: tubal tonsil def: "the lymph tissue associated with the pharyngeal opening of the auditory tube" [MP:0002386] synonym: "auditory tube lymph gland" EXACT [FMA:54975] synonym: "eustachian amygdala" EXACT [FMA:54975] synonym: "gerlach's tonsil" EXACT [FMA:54975] synonym: "gerlach's tubal tonsil" EXACT [FMA:54975] xref: FMA:54975 xref: SCTID:143319002 is_a: UBERON:0002372 ! tonsil relationship: part_of UBERON:0001735 ! tonsillar ring [Term] id: UBERON:0003950 name: inner ear canal def: "the tubular ducts of the inner ear" [MP:0002729] is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0001846 ! internal ear [Term] id: UBERON:0003951 name: ocular fundus def: "the posterior concave interior of the eye, consisting of the retina, the choroid, the posterior segment of the sclera, the optic disk, and blood vessels, visible by an ophthalmoscope" [MP:0002864, Wikipedia:Fundus_(eye)] comment: TODO - check relationships synonym: "eye fundus" EXACT [] synonym: "fundus" EXACT [HP:0001098] synonym: "fundus oculi" EXACT [] synonym: "fundus of eye" EXACT [] xref: EHDAA2:0000583 xref: GAID:908 xref: galen:FundusOculi xref: MESH:A.09.371.729.313 xref: ncithesaurus:Fundus xref: SCTID:362519003 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001802 ! posterior segment of eyeball [Term] id: UBERON:0003952 name: anterior stroma def: "the anterior segment of the lamellated connective tissue layer of the cornea" [MP:0003093] is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001777 ! substantia propria of cornea [Term] id: UBERON:0003953 name: posterior stroma def: "the posterior segment of the lamellated connective tissue layer of the cornea" [MP:0003094] is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001777 ! substantia propria of cornea [Term] id: UBERON:0003954 name: squamo-parietal suture def: "the articulation of the squamous portion of the temporal bones with the parietal bones" [MP:0003844] xref: EMAPA:19228 is_a: UBERON:0003685 ! cranial suture [Term] id: UBERON:0003955 name: molar crown def: "the part of a molar that is covered by enamel" [MP:0003932] synonym: "crown of molar tooth" EXACT [FMA:85301] synonym: "molar tooth crown" EXACT [FMA:85301] synonym: "molar tooth tooth crown" EXACT [OBOL:automatic] synonym: "tooth crown of molar tooth" EXACT [OBOL:automatic] xref: FMA:85301 is_a: UBERON:0003675 ! tooth crown relationship: part_of UBERON:0003655 intersection_of: UBERON:0003675 ! tooth crown intersection_of: part_of UBERON:0003655 ! molar tooth relationship: part_of UBERON:0003655 ! molar tooth [Term] id: UBERON:0003956 name: aqueous drainage system def: "the structures associated with drainage of the aqueous humor from the eye, that include the trabecular meshwork, Schlemm's canal, the uveoscleral network, and the aqueous veins" [MP:0005198] is_a: UBERON:0000467 ! anatomical system relationship: part_of UBERON:0001768 ! vascular layer of eyeball [Term] id: UBERON:0003957 name: Bruch's membrane def: "A transparent, nearly structureless innermost layer of the choroid in contact with the pigmented layer of the retina. Bruch's membrane consists of five layers (from inside to outside): 1. the basement membrane of the retinal pigment epithelium; 2. the inner collagenous zone; 3. a central band of elastic fibers; 4. the outer collagenous zone; 5. the basement membrane of the choriocapillaris. The retinal pigment epithelium transports metabolic waste from the photoreceptors across Bruch's membrane to the choroid." [MP:0005239, Wikipedia:Bruch's_membrane] comment: TODO - check FMA subset: vertebrate_core synonym: "basal lamina of choroid" EXACT [FMA:58438] synonym: "Bruch membrane" EXACT [GAID:914] synonym: "Bruch's basal membrane" EXACT [FMA:58438] synonym: "lamina basalis (choroid)" EXACT [FMA:58438] synonym: "lamina basilis" EXACT [FMA:58438] xref: FMA:58438 xref: GAID:914 xref: MESH:A.09.371.894.223.250 xref: SCTID:280652000 xref: ZFA:0005562 is_a: UBERON:0000119 ! cell layer relationship: part_of UBERON:0001776 ! choroid [Term] id: UBERON:0003958 name: long bone epiphyseal ossification zone def: "The layer of the epiphyseal plate where new bone matrix is deposited" [MP:0006399] is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0002495 ! long bone relationship: part_of UBERON:0002516 ! epiphyseal plate [Term] id: UBERON:0003959 name: rete testis def: "the network of canals at the termination of the straight tubules in the mediastinum testis[MP]. Rete testis is an anastomosing network of delicate tubules located in the hilum of the testicle (mediastinum testis) that carries sperm from the seminiferous tubules to the vasa efferentia[WP]." [MP:0006416, Wikipedia:Rete_testis] synonym: "haller's rete" EXACT [FMA:19834] xref: EMAPA:18332 xref: FMA:19834 xref: GAID:399 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b5/Hodenschema.svg/200px-Hodenschema.svg.png xref: MESH:A.05.360.444.849.600 xref: ncithesaurus:Rete_Testis xref: SCTID:279617009 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0005051 ! mediastinum testis [Term] id: UBERON:0003960 name: styloid process def: "slender needle-like pointed projection that runs downward and slightly forward from the base of the inferior surface of the petrous portion of the temporal bone where it joins the tympanic portion; it gives attachment to the styloglossus, stylohyoid, and stylopharyngeus muscles and the stylohyoid and stylomandibular ligaments" [MP:0008023, Wikipedia:Temporal_styloid_process] synonym: "styloid process of petrous part of temporal bone" EXACT [FMA:52877] synonym: "styloid process of temporal bone" EXACT [FMA:52877] xref: FMA:52877 xref: SCTID:138874009 is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:0001678 ! temporal bone [Term] id: UBERON:0003961 name: cingulum def: "the white matter fiber bundle that projects from the cingulate gyrus to the entorhinal cortex in the brain" [MP:0008232] xref: SCTID:369084007 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain relationship: part_of UBERON:0003544 ! brain white matter [Term] id: UBERON:0003962 name: pterygopalatine ganglion def: "the small parasympathetic ganglion that supplies nerve fibers to the lacrimal, nasal, palatine and pharyngeal glands" [MP:0008314, Wikipedia:Pterygopalatine_ganglion] synonym: "meckel's ganglion" EXACT [FMA:6965] xref: FMA:6965 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a9/Gray779.png/200px-Gray779.png is_a: UBERON:0001808 ! parasympathetic ganglion [Term] id: UBERON:0003963 name: otic ganglion def: "the ganglion that supplies nerve fibers to the parotid gland" [MP:0008315, Wikipedia:Otic_ganglion] synonym: "arnold's ganglion" EXACT [FMA:6967] xref: EHDAA:6706 xref: EHDAA2:0001335 xref: FMA:6967 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray783.png/200px-Gray783.png xref: SCTID:279283005 is_a: UBERON:0001808 ! parasympathetic ganglion [Term] id: UBERON:0003964 name: prevertebral ganglion def: "the sympathetic ganglia located in front of the vertebral column and are associated with the major branches of the abdominal aorta; these include the celiac, aorticorenal, superior and inferior mesenteric ganglia" [MP:0008316] synonym: "collateral ganglion" EXACT [FMA:5892] synonym: "previsceral ganglion" EXACT [FMA:5892] xref: FMA:5892 is_a: UBERON:0001806 ! sympathetic ganglion [Term] id: UBERON:0003965 name: sympathetic afferent fiber def: "the fibers that conduct sensory nerve impulses from the viscera through the posterior dorsal roots into the spinal cord" [MP:0008319] is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0000013 ! sympathetic nervous system [Term] id: UBERON:0003966 name: gonial bone def: "investing bone that lies on the surface of the malleus." [MP:0008380] is_a: UBERON:0001474 ! bone is_a: UBERON:0003457 ! implied link automatically realized ! head bone relationship: part_of UBERON:0001686 ! auditory ossicle [Term] id: UBERON:0003967 name: cutaneous elastic fiber def: "the slender connective tissue fiber in the extracellular matrix of skin tissue that is composed of microfibrils and amorphous elastin and is characterized by great elasticity" [MP:0008418] is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0002097 ! skin of body [Term] id: UBERON:0003968 name: peripheral lymph node def: "the lymph nodes located outside the thoracic and abdominal cavities, such as the submandibular, prescapular, axillary, inguinal and popliteal lymph nodes" [MP:0008463] is_a: UBERON:0000029 ! lymph node [Term] id: UBERON:0003969 name: spleen B cell follicle def: "the area of the white pulp where the affinity maturation of B cells and the generation of memory B cells and plasma cells occur" [MP:0008470] is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0001959 ! white pulp of spleen [Term] id: UBERON:0003970 name: placental labyrinth vasculature def: "blood vessels of the layer of the placenta where embryonic and maternal blood vessels interdigitate" [MP:0008803] synonym: "placenta vascular network" EXACT [OBOL:automatic] synonym: "placenta vasculature" EXACT [OBOL:automatic] synonym: "vascular network of placenta" EXACT [OBOL:automatic] synonym: "vasculature of placenta" EXACT [OBOL:automatic] is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002049 ! vasculature is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure is_a: UBERON:0006876 ! implied link automatically realized ! vasculature of organ relationship: part_of UBERON:0001987 intersection_of: UBERON:0002049 ! vasculature intersection_of: part_of UBERON:0001987 ! placenta relationship: part_of UBERON:0001987 ! placenta [Term] id: UBERON:0003971 name: interfrontal bone def: "a bone between the frontal bones in the skull; an extra bony plate within the anterior fontanelle that is not usually present" [MP:0008818] is_a: UBERON:0001474 ! bone is_a: UBERON:0003462 ! implied link automatically realized ! viscerocranium bone relationship: part_of UBERON:0001704 ! viscerocranium [Term] id: UBERON:0003972 name: placenta junctional zone def: "Fetally derived placental region that separates the maternal uterine tissue from the placenta labyrinth" [MP:0008957] is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0001987 ! placenta [Term] id: UBERON:0003973 name: nasal concha of ethmoid bone def: "One of the conchae of the ethmoid bone, which occupy the caudal part of the nasal fossae and form the lateral and superior portions of the turbinate bones in mammals" [MP:0008971] comment: Note that FMA considers nasal concha and nasal concha of ethmoid bone to be synonymous. We disambiguate these here synonym: "ethmo-turbinate" EXACT [] synonym: "ethmoturbinate" EXACT [MP:0008971] synonym: "nasal turbinate of ethmoid bone" EXACT [] synonym: "turbinate of ethmoid bone" EXACT [] xref: FMA:57456 is_a: UBERON:0000032 ! implied link automatically realized ! cranial structure is_a: UBERON:0001762 ! implied link automatically realized ! nasal concha relationship: part_of UBERON:0001679 intersection_of: UBERON:0001762 ! nasal concha intersection_of: part_of UBERON:0001679 ! ethmoid relationship: develops_from UBERON:0006332 {source="ISBN10:1588903958"} ! nasal capsule [Term] id: UBERON:0003974 name: cranial vagina def: "the upper third of the female reproductive canal located between the uterus and the vulva." [MP:0009077] is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0000996 ! vagina [Term] id: UBERON:0003975 name: internal female genitalia def: "the internal feminine genital organs, including the ovaries, uterine tubes, uterus, uterine cervix, and vagina." [MP:0009209] subset: organ_slim synonym: "female internal genitalia" EXACT [FMA:45654] synonym: "internal female genital organ" EXACT [BTO:0003099] synonym: "internal genitalia of female reproductive system" EXACT [OBOL:automatic] synonym: "organa genitalia feminina interna" RELATED [BTO:0003099] xref: BTO:0003099 xref: FMA:45654 xref: SCTID:303518005 is_a: UBERON:0003134 ! implied link automatically realized ! female reproductive organ is_a: UBERON:0004175 ! implied link automatically realized ! internal reproductive organ relationship: part_of UBERON:0000474 intersection_of: UBERON:0004175 ! internal reproductive organ intersection_of: part_of UBERON:0000474 ! female reproductive system [Term] id: UBERON:0003976 name: saccule duct def: "the saccular portion of the utriculosaccular duct that normally extends from the sacculus to the endolymphatic duct" [MP:0009259] is_a: UBERON:0000058 ! duct is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001854 ! saccule of membranous labyrinth [Term] id: UBERON:0003977 name: utricle duct def: "the utricular portion of the utriculosaccular duct that normally extends from the utriculus to the endolymphatic duct" [MP:0009260] is_a: UBERON:0000058 ! duct is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001853 ! utricle of membranous labyrinth [Term] id: UBERON:0003978 name: valve subset: grouping_class synonym: "anatomical valve" EXACT [FMA:67611] xref: EHDAA:1892 xref: EHDAA:4406 xref: EHDAA2:0002165 xref: FMA:67611 xref: galen:Valve xref: OpenCyc:Mx4rvqiwE5wpEbGdrcN5Y29ycA is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0003979 name: utricle valve def: "the utriculo-endolymphatic (UE) valve which is located in the antero-inferior wall of the utricle at the orifice of the utricular duct and serves to regulate endolymph volume in the endolymphatic sac, the utricle and the canals" [MP:0009261] is_a: UBERON:0003978 ! valve is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001853 ! utricle of membranous labyrinth [Term] id: UBERON:0003980 name: cerebellum fissure def: "the deep furrows which divide the lobules of the cerebellum, including the postcentral, primary and secondary furrows" [MP:0009267] comment: we use the FMA set-of term in absence of a singular term synonym: "fissurae cerebelli" EXACT [FMA:77789, FMA:TA] xref: FMA:77789 xref: SCTID:314163001 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0002129 ! cerebellar cortex [Term] id: UBERON:0003981 name: primordial ovarian follicle def: "primordial follicles are indiscernible to the naked eye and develop to primary, secondary, and finally mature vesicular follicles" [MP:0009361] synonym: "ovary primordial follicle" EXACT [MA:0001710] xref: EMAPA:30755 xref: MA:0001710 is_a: UBERON:0001305 ! ovarian follicle [Term] id: UBERON:0003982 name: mature ovarian follicle def: "." [MP:0009364] subset: vertebrate_core synonym: "antral follicle" RELATED [BTO:0000389] synonym: "folliculi ovarici vesiculosi" RELATED [BTO:0000389] synonym: "ovarian follicle stage IV" EXACT [ZFA:0001264] synonym: "ovary mature follicle" EXACT [MA:0001709] synonym: "preovulatory follicle" RELATED [BTO:0000389] xref: BTO:0000389 xref: EFO:0003653 xref: MA:0001709 xref: ZFA:0001264 is_a: UBERON:0001305 ! ovarian follicle relationship: develops_from UBERON:0003981 ! primordial ovarian follicle [Term] id: UBERON:0003983 name: conus arteriosus def: "a conical pouch formed from the upper and left angle of the right ventricle in the chordate heart, from which the pulmonary artery arises[WP]. the anteriosuperior, smooth-walled portion of the cavity of the right ventricle, beginning at the supraventricular crest and terminates in the pulmonary trunk[MP]." [MP:0009464, Wikipedia:Conus_arteriosus] synonym: "infundibulum" BROAD [Wikipedia:Conus_arteriosus] xref: AAO:0010250 xref: EHDAA2:0000828 xref: EMAPA:29897 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/46/Gray492.png/200px-Gray492.png xref: ncithesaurus:Infundibulum is_a: UBERON:0004151 ! cardiac chamber relationship: part_of UBERON:0002080 ! heart right ventricle [Term] id: UBERON:0003984 name: uterine tube infundibulum def: "the funnel-like expansion of the abdominal extremity of the uterine tube" [MP:0009466, Wikipedia:Infundibulum_of_uterine_tube] synonym: "infundibulum of fallopian tube" EXACT [FMA:18307] synonym: "infundibulum of oviduct" EXACT [FMA:18307] synonym: "infundibulum of uterine tube" EXACT [FMA:18307] xref: EMAPA:29897 xref: FMA:18307 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Illu_cervix.jpg/200px-Illu_cervix.jpg xref: SCTID:362262001 is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0003889 ! fallopian tube [Term] id: UBERON:0003985 name: major sublingual duct def: "the duct that drains the anterior portion of the sublingual gland and opens at the sublingual papilla" [MP:0009528] synonym: "bartholin's duct" EXACT [FMA:59986] xref: BTO:0004558 xref: FMA:59986 xref: SCTID:25237008 is_a: UBERON:0000058 ! duct is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0003928 ! implied link automatically realized ! digestive system duct relationship: part_of UBERON:0001838 ! sublingual duct [Term] id: UBERON:0003986 name: minor sublingual duct def: "the 8-20 small ducts that open into the mouth on the surface of the sublingual fold" [MP:0009529] xref: FMA:59987 is_a: UBERON:0000058 ! duct is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0003928 ! implied link automatically realized ! digestive system duct relationship: part_of UBERON:0001838 ! sublingual duct [Term] id: UBERON:0003987 name: Hassall's corpuscle def: "the small spherical bodies of epithelial cells found in the medulla of the thymus, that are arranged in a concentric pattern around clusters of degenerating lymphocytes, eosinophils and macrophages" [MP:0009539] xref: MA:0000772 xref: ncithesaurus:Hassall_s_Corpuscle xref: SCTID:34223001 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure relationship: part_of UBERON:0002124 ! medulla of thymus relationship: part_of UBERON:0003846 ! thymus epithelium [Term] id: UBERON:0003988 name: thymus corticomedullary boundary def: "the dense region demarcating the thymus medulla from the surrounding cortex that is characterized by numerous blood vessels (predominantly arterioles) with some perivascular connective tissue, mature and immature T lymphocytes, dendritic cells, variable numbers of perivascular B-lymphocytes and plasma cells; site of entry of bone marrow stem cells and exit of mature, functional T cells" [MP:0009543] is_a: UBERON:0000015 ! implied link automatically realized ! anatomical boundary relationship: adjacent_to UBERON:0002123 relationship: adjacent_to UBERON:0002124 intersection_of: UBERON:0000015 ! anatomical boundary intersection_of: adjacent_to UBERON:0002123 ! cortex of thymus intersection_of: adjacent_to UBERON:0002124 ! medulla of thymus relationship: part_of UBERON:0002125 ! lobule of thymus [Term] id: UBERON:0003989 name: medulla oblongata anterior median fissure def: "the longitudinal groove in the midline of the anterior aspect of the medulla oblongata" [MP:0009680] synonym: "anterior median fissure" EXACT [FMA:83734] synonym: "anterior median fissure of medulla" EXACT [FMA:83734] synonym: "anterior median fissure of medulla oblongata" EXACT [FMA:83734] synonym: "fissura mediana anterior medullae oblongatae" EXACT [FMA:83734, FMA:TA] synonym: "ventral median fissure of medulla" EXACT [FMA:83734] synonym: "ventral median sulcus" EXACT [FMA:83734] xref: FMA:83734 xref: SCTID:279288001 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0003990 name: spinal cord motor column def: "the subclasses of motor neurons which are organized into longitudinally oriented columns that occupy distinct and, in some cases, discontinuous domains along the rostrocaudal axis of the spinal cord; motor neurons within a single column send their axons to a common peripheral target" [MP:0009685] is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0002240 ! spinal cord [Term] id: UBERON:0003991 name: fourth ventricle median aperture def: "the large midline opening of the posterior inferior part of the roof of the fourth ventricle that connects the fourth ventricle to the posterior cerebromedullary cistern and the spinal cord" [MP:0009802, Wikipedia:Median_aperture] synonym: "arachnoid forament" RELATED [MA:0002947] synonym: "foramen of Magendie" EXACT [FMA:75015] synonym: "foramen of Majendie" EXACT [FMA:75015] synonym: "fourth ventricle median aperture" EXACT [MA:0002947] synonym: "median aperture" BROAD [MP:0009802] synonym: "median aperture of fourth ventricle" EXACT [FMA:75015] xref: FMA:75015 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b9/Gray708.svg/200px-Gray708.svg.png xref: MA:0002947 xref: ncithesaurus:Foramen_of_Magendie xref: SCTID:279449001 is_a: UBERON:0004668 ! fourth ventricle aperture [Term] id: UBERON:0003992 name: fourth ventricle lateral aperture def: "The lateral aperture is a paired structure in human anatomy. It is an opening in each lateral extremity of the lateral recess of the fourth ventricle of the human brain. Along with the single median aperture, the two lateral aperatures provide a conduit for cerebrospinal fluid to flow from the brain's ventricular system into the subarachnoid space[WP]. the two lateral openings of the fourth ventricle into the subarachnoid space at the cerebellopontine angle[MP]." [MP:0009803, Wikipedia:Lateral_aperture] synonym: "apertura lateralis" EXACT [FMA:78473, FMA:TA] synonym: "foramen of key and retzius" EXACT [FMA:78473] synonym: "foramen of Key-Retzius" EXACT [FMA:78473] synonym: "foramen of Luschka" EXACT [FMA:78473] synonym: "foramen of Retzius" EXACT [FMA:78473] synonym: "forament of Luschka" RELATED [MA:0002946] synonym: "lateral aperture" BROAD [MP:0009803] synonym: "lateral aperture of fourth ventricle" EXACT [FMA:78473] xref: FMA:78473 xref: MA:0002946 xref: ncithesaurus:Foramen_of_Luschka xref: SCTID:63426007 is_a: UBERON:0004668 ! fourth ventricle aperture [Term] id: UBERON:0003993 name: interventricular foramen def: "the paired channels that connect the lateral and third ventricles and allows cerebrospinal fluid produced in the lateral ventricles to flow into the third ventricles" [MP:0009804] xref: FMA:75351 xref: ncithesaurus:Interventricular_Foramen xref: SCTID:279248006 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002286 ! third ventricle [Term] id: UBERON:0003994 name: pelvic ligament def: "the dorsal sacroiliac, the sacrotuberal and/or the iliolumbar ligaments associated with the bony ring formed by the pair of hip bones fused at the symphysis and their firm articulation with the sacrum" [MP:0009807] synonym: "pelvis ligament" EXACT [MA:0002948] xref: MA:0002948 is_a: UBERON:0000211 ! ligament is_a: UBERON:0003594 ! implied link automatically realized ! pelvis connective tissue relationship: part_of UBERON:0002355 ! pelvis [Term] id: UBERON:0003995 name: subarcuate fossa def: "the irregular depression found on the posterior inner surface of the petrous portion of the temporal bone just below its crest and above and lateral to the internal acoustic meatus[MP]. In the temporal bone, above and between the aquæductus vestibuli is an irregular depression which lodges a process of the dura mater and transmits a small vein and the subarcuate artery[1] a branch of the internal auditory artery, which is an end artery that supplies blood to the inner ear ; in the infant this depression is represented by a large fossa, the subarcuate fossa, which extends backward as a blind tunnel under the superior semicircular canal. It is extensive in most primates (except for great apes) and nearly all mammals. In these animals, the subarcuate fossa houses a part of the cerebellum, the petrosal lobe[WP]." [MP:0009822] xref: FMA:56418 is_a: UBERON:0004704 ! bone fossa is_a: UBERON:0008789 ! implied link automatically realized ! cranial fossa relationship: part_of UBERON:0001678 ! temporal bone [Term] id: UBERON:0003996 name: arcus anterior alt_id: UBERON:0005209 def: "The anterior arch of the atlas forms about one-fifth of the ring of the atlas: its anterior surface is convex, and presents at its center the anterior tubercle for the attachment of the Longus colli muscles; posteriorly it is concave, and marked by a smooth, oval or circular facet (fovea dentis), for articulation with the odontoid process (dens) of the axis[WP]. The arch that connects the lateral masses of the atlas anteriorly and articulates with the anterior articular facet of the dens of the axis[MP]." [MP:0009879, Wikipedia:Anterior_arch_of_atlas] synonym: "anterior arch of atlas" EXACT [MA:0002954] synonym: "arcus anterior atlantis" EXACT [MA:0002954] synonym: "cervical vertebra 1 arcus anterior" EXACT [MA:0002954] xref: FMA:23976 xref: MA:0002954 xref: SCTID:181891000 is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:0001092 ! first cervical vertebra [Term] id: UBERON:0003997 name: hyoid bone greater horn def: "the larger and more lateral of the paired processes on either side of the hyoid bone" [MP:0009913] synonym: "cornu majus" EXACT [FMA:59496] synonym: "cornu majus ossis hyoidei" EXACT [FMA:59496, FMA:TA] synonym: "greater cornu" EXACT [FMA:59496] synonym: "greater horn" EXACT [FMA:59496] synonym: "greater horn of hyoid" EXACT [FMA:59496] synonym: "greater horn of hyoid bone" EXACT [FMA:59496] synonym: "hyoid bone greater cornu" RELATED [MA:0002959] synonym: "hyoid bone superior horn" RELATED [MA:0002959] synonym: "hyoid bone upper horn" RELATED [MA:0002959] xref: EMAPA:18651 xref: EMAPA:18841 xref: FMA:59496 xref: MA:0002959 xref: SCTID:369008008 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001685 ! hyoid bone [Term] id: UBERON:0003998 name: hyoid bone lesser horn def: "shorter and more medial of the paired processes on either side of the hyoid bone" [MP:0009914] synonym: "cornu minus" EXACT [FMA:59499] synonym: "cornu minus ossis hyoidei" EXACT [FMA:59499, FMA:TA] synonym: "hyoid bone lesser cornu" RELATED [MA:0002960] synonym: "hyoid bone lower horn" RELATED [MA:0002960] synonym: "lesser cornu" EXACT [FMA:59499] synonym: "lesser horn" EXACT [FMA:59499] synonym: "lesser horn of hyoid" EXACT [FMA:59499] synonym: "lesser horn of hyoid bone" EXACT [FMA:59499] xref: EMAPA:18652 xref: EMAPA:18842 xref: FMA:59499 xref: MA:0002960 xref: SCTID:369007003 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001685 ! hyoid bone [Term] id: UBERON:0003999 name: hyoid bone body def: "the main curve of the hyoid bone, from which the horns extend" [MP:0009917, Wikipedia:Body_of_hyoid_bone] synonym: "base of hyoid bone" RELATED [MA:0002958] synonym: "basihyal bone" RELATED [MA:0002958] synonym: "basihyoid bone" RELATED [MA:0002958] synonym: "body of hyoid bone" RELATED [MA:0002958] synonym: "hyoid bone base" RELATED [MA:0002958] xref: EMAPA:18653 xref: EMAPA:18843 xref: FMA:59495 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1f/Gray186.png/200px-Gray186.png xref: MA:0002958 xref: SCTID:369006007 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001685 ! hyoid bone [Term] id: UBERON:0004000 name: meibomian gland acinus def: "." [MP:0009935] is_a: UBERON:0001818 ! tarsal gland [Term] id: UBERON:0004001 name: olfactory bulb layer def: "." [MP:0009946] comment: TODO - check isa parentage synonym: "cytoarchitectural part of olfactory bulb" EXACT [NIF_GrossAnatomy:nlx_anat_20090402] xref: NIF_GrossAnatomy:nlx_anat_20090402 is_a: UBERON:0000119 ! cell layer is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0002264 ! olfactory bulb [Term] id: UBERON:0004002 name: cerebellum posterior lobe def: "the region of the cerebellum that is posterior to the primary fissure and anterior to the posteriolateral fissure" [MP:0009962] synonym: "cerebrocerebellum" EXACT [FMA:72252] synonym: "middle lobe-1 of cerebellum" EXACT [FMA:72252] synonym: "posterior cerebellar lobe" EXACT [FMA:72252] synonym: "posterior lobe of cerebellum" EXACT [] synonym: "posterior lobe of the cerebellum" EXACT [NIF_GrossAnatomy:birnlex_911] synonym: "posterior lobe-1 of cerebellum" EXACT [FMA:72252] xref: FMA:72252 xref: MA:0002964 xref: NIF_GrossAnatomy:birnlex_911 xref: SCTID:279360009 is_a: UBERON:0005293 ! cerebellum lobe [Term] id: UBERON:0004003 name: cerebellum hemisphere lobule def: "the region of a cerebellar lobule that resides in either of the lateral sections of the cerebellum outside the vermis; in mammals, the vermis portion of the cerebellum has a foliation pattern along the AP axis that is distinct from the lateral cerebellar hemispheres" [MP:0009963] comment: TODO - define as a region overlapping synonym: "cerebellar hemisphere lobule" EXACT [] synonym: "lobule of cerebellar hemisphere" EXACT [FMA:83880] synonym: "lobule of hemisphere of cerebellum" EXACT [FMA:83880] xref: FMA:83880 xref: MA:0002967 is_a: UBERON:0004004 ! implied link automatically realized ! cerebellum lobule relationship: part_of UBERON:0002245 intersection_of: UBERON:0004004 ! cerebellum lobule intersection_of: part_of UBERON:0002245 ! hemisphere of cerebellum [Term] id: UBERON:0004004 name: cerebellum lobule def: "one of the the ten gyri of the cerebellar cortex" [MP:0009964] synonym: "lobular parts of the cerebellar cortex" EXACT [NIF_GrossAnatomy:birnlex_1084] xref: MA:0002966 xref: NIF_GrossAnatomy:birnlex_1084 is_a: UBERON:0002749 ! implied link automatically realized ! regional part of cerebellar cortex is_a: UBERON:0002946 ! regional part of cerebellum relationship: part_of UBERON:0002129 ! cerebellar cortex [Term] id: UBERON:0004005 name: cerebellum lateral hemisphere def: "the most lateral paired regions of the cerebellum; the lateral zone receives input from the parietal cortex via pontocerebellar mossy fibers regarding the location and position of the body and integrates input signals with indications of muscle activity" [MP:0009965] is_a: UBERON:0002749 ! implied link automatically realized ! regional part of cerebellar cortex is_a: UBERON:0002946 ! regional part of cerebellum relationship: part_of UBERON:0002245 ! hemisphere of cerebellum [Term] id: UBERON:0004006 name: cerebellum intermediate hemisphere def: "the paired regions of the cerebellar hemisphere that lie adjacent to the vermis and are between the vermis and lateral regions of the hemispheres; it receives input from the corticopontocerebellar fibers that originate from the motor cortex, and also receives sensory feedback from the muscles; these signals are integrated by this region, to coordinate muscle activity with motor inputs" [MP:0009966] is_a: UBERON:0002749 ! implied link automatically realized ! regional part of cerebellar cortex is_a: UBERON:0002946 ! regional part of cerebellum relationship: part_of UBERON:0002245 ! hemisphere of cerebellum [Term] id: UBERON:0004008 name: cerebellar plate def: "the embryonic pseudostratified epithelium of the fourth cerebellar ventricle that eventually forms the vermis and ventral neuroepithelium" [MP:0000856] is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0004009 name: cerebellum posterior vermis def: "the posterior portion of the narrow middle zone between the two hemispheres of the cerebellum that is located posterior to the primary fissure" [MP:0000869] synonym: "posterior cerebellum vermis" EXACT [] synonym: "vermis of posterior lobe" EXACT [FMA:72259] synonym: "vermis of posterior lobe of cerebellum" EXACT [] synonym: "vermis of the posterior lobe of the cerebellum" EXACT [NIF_GrossAnatomy:nlx_anat_20081240] xref: FMA:72259 xref: MA:0002970 xref: NIF_GrossAnatomy:nlx_anat_20081240 is_a: UBERON:0004720 ! cerebellar vermis relationship: part_of UBERON:0004002 ! cerebellum posterior lobe [Term] id: UBERON:0004010 name: primary muscle spindle def: "the sensory organ in muscle; involved in the stretch reflex and sensitive to stretch velocity" [MP:0000991] is_a: UBERON:0003718 ! muscle spindle [Term] id: UBERON:0004011 name: secondary muscle spindle def: "the sensory organ in muscle; involved in the stretch reflex and not sensitive to stretch velocity" [MP:0000994] is_a: UBERON:0003718 ! muscle spindle [Term] id: UBERON:0004012 name: golgi tendon organ def: "the sensory organ in muscle that is involved in regulating muscle tension" [MP:0000999] synonym: "neurotendinous ending" EXACT [FMA:83608] synonym: "neurotendinous organ of golgi" EXACT [FMA:83608] xref: FMA:83608 xref: ncithesaurus:Golgi_Tendon_Organ is_a: UBERON:0000020 ! sense organ is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001630 ! muscle organ [Term] id: UBERON:0004013 name: egg cylinder def: "the transient cup-like structure of the epiblast that consists of a single layer of embryonic cells" [MP:0003085] is_a: UBERON:0000119 ! cell layer is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue relationship: part_of UBERON:0002532 ! epiblast [Term] id: UBERON:0004014 name: labia minora def: "The labia minora or nymphae are two longitudinal cutaneous folds on the human vulva. They are situated between the labia majora, and extend from the clitoris obliquely downward, laterally, and backward on either side of the vulval vestibule, ending between bottom of the vulval vestibule and the labia majora. In the virgin the posterior ends of the labia minora are usually joined across the middle line by a fold of skin, named the frenulum labiorum pudendi or fourchette. Labia minora may vary widely in size from woman to woman. On the front, each labium minus (nympha) divides into two portions: the upper division passes above the clitoris to meet the labium minus of the opposite side—which may not be equal in size—forming a fold which overhangs the glans clitoridis; this fold is named the preputium clitoridis. The lower division passes beneath the glans clitoridis and becomes united to its under surface, forming, with the labium minus of the opposite side—which also may not be equal in size—the frenulum clitoridis. On the opposed surfaces of the labia minora are numerous sebaceous follicles. [WP,unvetted]." [Wikipedia:Labia_minora] synonym: "labium minora" EXACT [] synonym: "labium minorum" EXACT [] synonym: "labium minus" EXACT [FMA:20374] xref: FMA:20374 xref: galen:LabiaMinora xref: MA:0002845 xref: ncithesaurus:Labium_Minus xref: SCTID:362240001 is_a: UBERON:0004084 ! labium [Term] id: UBERON:0004015 name: embryonic-extraembryonic boundary def: "the normal development /maintenance of the connection between the embryo proper and extraembryonic tissues" [MP:0003890] is_a: UBERON:0000015 ! implied link automatically realized ! anatomical boundary relationship: adjacent_to UBERON:0000478 relationship: adjacent_to UBERON:0002050 intersection_of: UBERON:0000015 ! anatomical boundary intersection_of: adjacent_to UBERON:0000478 ! extraembryonic structure intersection_of: adjacent_to UBERON:0002050 ! embryonic structure [Term] id: UBERON:0004016 name: dermatome def: "the mesoderm that is derived from the somite that is fated to become the dermis[MP]" [MP:0003940, Wikipedia:Cutis_plate] synonym: "Cutis plate" EXACT [Wikipedia:Cutis_plate] xref: AAO:0011028 xref: EHDAA:1719 xref: EHDAA:1725 xref: EHDAA:1731 xref: EHDAA:1737 xref: EHDAA2:0003428 xref: ncithesaurus:Dermatome xref: SCTID:244023005 xref: XAO:0000220 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue relationship: develops_from UBERON:0002329 ! somite relationship: part_of UBERON:0000926 ! mesoderm relationship: part_of UBERON:0004290 ! dermomyotome [Term] id: UBERON:0004017 name: periocular mesenchyme def: "the mesenchymal cells that give rise to the corneal endothelium, corneal stroma, sclera, iris stroma, ciliary muscle, ciliary stroma, and trabecular meshwork of the eye" [MP:0004054] comment: see also XAO:0004089 (undefined) xref: ZFA:0005572 is_a: UBERON:0003104 ! mesenchyme [Term] id: UBERON:0004019 name: baroreceptor def: "the sensory nerve endings in the wall of the atria of the heart, vena cava, aortic arch and carotid sinus that are sensitive to changes in blood pressure" [MP:0004118] xref: FMA:85601 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0004020 name: embryonic cilium def: "the earliest cilia of the mouse embryo found on the cells of the embryonic node" [MP:0004131] comment: TODO is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0004021 name: spongiotrophoblast layer def: "the structure of the outer structural layer of the rodent placenta" [MP:0004255] is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000119 ! cell layer is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0001987 ! placenta [Term] id: UBERON:0004022 name: embryonic neuroepithelium def: "the epithelial cell layer that lines the neural tube and develops into the nervous system and into the neural crest cells" [MP:0004261] synonym: "neurepithelium" BROAD [BTO:0000314] xref: BTO:0000314 is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system is_a: UBERON:0000483 ! epithelium is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue relationship: part_of UBERON:0001049 ! neural tube [Term] id: UBERON:0004023 name: ganglionic eminence def: "the transient proliferative population of neurons that expands exponentially during late prenatal development; it is a continuous germinal zone distinct from the ventricular zone that surrounds the brain ventricles[MP]. The eminences are found in the ventral part of the telencephalon, where they form bulges in the ventricles. These bulges develop into the basal ganglia.[1] They also contribute significantly in building up the GABAergic cortical cell population[WP]." [MP:0004274, Wikipedia:Ganglionic_eminence] synonym: "embryonic subventricular zone" EXACT [] synonym: "embryonic/fetal subventricular zone" EXACT [] synonym: "fetal subventricular zone" EXACT [] synonym: "GE" BROAD [] is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0004024 name: medial ganglionic eminence def: "a distinct elevation of a transient proliferating cell mass of the fetal subventricular zone; this mass contributes most of its cells to the neocortex; however, hippocampal neurons, thalamus, septum and olfactory bulb neurons are also partly derived from the MGE." [MP:0004276] synonym: "MGE" BROAD [] is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system is_a: UBERON:0002050 ! implied link automatically realized ! embryonic structure relationship: part_of UBERON:0004023 ! ganglionic eminence [Term] id: UBERON:0004025 name: lateral ganglionic eminence def: "a distinct elevation of a transient proliferating cell mass of the fetal subventricular zone; this mass contributes most of its cells to the striatum; however, neocortex, thalamus, septum and olfactory bulb neurons are also partly derived from the LGE" [MP:0004277] synonym: "LGE" BROAD [] is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system is_a: UBERON:0002050 ! implied link automatically realized ! embryonic structure relationship: part_of UBERON:0004023 ! ganglionic eminence [Term] id: UBERON:0004026 name: caudal ganglionic eminence def: "the caudally located, distinct elevation of a transient proliferating cell mass of the fetal subventricular zone, located adjacent to the lateral ventricle" [MP:0004278] synonym: "CGE" BROAD [] xref: EFO:0001911 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system is_a: UBERON:0002050 ! implied link automatically realized ! embryonic structure relationship: part_of UBERON:0004023 ! ganglionic eminence [Term] id: UBERON:0004027 name: chorionic plate def: "the portion of the chorion from which chorionic villi develop that establish a connection with the endometrium, giving rise to the fetal portion of the mature placenta" [MP:0004560] xref: BTO:0002879 xref: ncithesaurus:Chorionic_Plate xref: SCTID:256391000 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0003124 ! chorion [Term] id: UBERON:0004029 name: canal of Schlemm def: "the vascular structure encircling the anterior chamber of the eye, through which the aqueous humor is returned to the blood circulation" [MP:0005204] synonym: "Schlemm's canal" EXACT [] synonym: "scleral sinus" EXACT [FMA:51873] synonym: "scleral venous sinus" EXACT [FMA:51873] synonym: "sinus venosus of sclera" EXACT [FMA:51873] xref: FMA:51873 xref: ncithesaurus:Canal_of_Schlemm xref: SCTID:280605006 is_a: UBERON:0001638 ! vein is_a: UBERON:0001653 ! implied link automatically realized ! facial vein is_a: UBERON:0007625 ! implied link automatically realized ! pigment epithelium of eye relationship: part_of UBERON:0003956 ! aqueous drainage system relationship: tributary_of UBERON:0003712 {source="FMA/obol"} ! cavernous sinus relationship: tributary_of UBERON:0005486 {source="FMA/obol"} ! venous dural sinus [Term] id: UBERON:0004030 name: aqueous vein def: "this vessel that receives aqueous humor from the sinus venosus sclerae (canal of Schlemm)" [MP:0005207] is_a: UBERON:0001638 ! vein is_a: UBERON:0001653 ! implied link automatically realized ! facial vein is_a: UBERON:0007625 ! implied link automatically realized ! pigment epithelium of eye relationship: part_of UBERON:0003956 ! aqueous drainage system [Term] id: UBERON:0004031 name: ectomesenchyme def: "mesenchymal cells derived from neural crest cells that contribute to development of the hard and soft tissue in the head and neck, including the branchial arches." [MP:0006302] is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: develops_from UBERON:0002342 ! neural crest [Term] id: UBERON:0004032 name: podocyte slit diaphragm def: "the thin membrane that covers the podocyte filtration slit which allows small molecules such as water, glucose, and ionic salts to pass through while retaining larger macromolecules in the bloodstream" [MP:0008060] comment: TODO - submit to GO is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0004033 name: podocyte slit junction def: "the gaps between the interdigitated foot processes of the podocyte" [MP:0008062] comment: TODO - submit to GO is_a: UBERON:0000061 ! anatomical structure relationship: adjacent_to UBERON:0004355 ! podocyte foot process [Term] id: UBERON:0004034 name: cutaneous microfibril def: "the fiber-like strand of fibrillin that forms the scaffold of the cutaneous elastic fibers found in the extracellular matrix of the skin" [MP:0008419] is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0003967 ! cutaneous elastic fiber [Term] id: UBERON:0004035 name: subplate def: "the transient outer neural tube region that contains the first generated post-mitotic neurons that receive synaptic input from thalamic axons and in turn project axons to the developing cortical plate" [MP:0008440] is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system is_a: UBERON:0002050 ! implied link automatically realized ! embryonic structure relationship: part_of UBERON:0001049 ! neural tube [Term] id: UBERON:0004036 name: retinal cone cell inner segment def: "the retinal cone cell region which contains the machinery of the cell (mitochondria, golgi, endoplasmic reticulum, etc) and where opsin molecules are assembled and passed to be part of the outer segment region" [MP:0008448] comment: request from GO as subclass of photoreceptor segment is_obsolete: true [Term] id: UBERON:0004037 name: retinal cone cell outer segment def: "the retinal cone cell region in which the visual pigment rhodopsin is in invaginations of the cell membrane" [MP:0008449] comment: request from GO as subclass of photoreceptor segment is_obsolete: true [Term] id: UBERON:0004038 name: retinal rod cell inner segment def: "the retinal rod cell region which contains the machinery of the cell (mitochondria, golgi, endoplasmic reticulum, etc) and where opsin molecules are assembled and passed to be part of the outer segment region" [MP:0008455] comment: request from GO as subclass of photoreceptor segment is_obsolete: true [Term] id: UBERON:0004039 name: retinal rod cell outer segment def: "the retinal rod cell region which contains stacks of membranous discs separate from the outer cell membrane that are rich in the visual pigment rhodopsin" [MP:0008456] comment: request from GO as subclass of photoreceptor segment is_obsolete: true [Term] id: UBERON:0004040 name: cortical intermediate zone def: "the region of the developing mammalian cortex that extends between the ventricular zone and the cortical plate (CP); normally, the IZ is a region of tangential migration of cells, and at midgestation, the lower part of the IZ develops into the subventricular zone" [MP:0008457] is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001893 ! telencephalon [Term] id: UBERON:0004041 name: spleen primary B follicle def: "the nodules of small undifferentiated B lymphocytes and follicular dendritic cells located in the spleen white pulp" [MP:0008471] is_a: UBERON:0003969 ! spleen B cell follicle [Term] id: UBERON:0004042 name: spleen secondary B follicle def: "the nodules of antigen-activated, differentiating B cells, follicular dendritic cells, antigen-presenting T cells and macrophages in the spleen white pulp" [MP:0008472] is_a: UBERON:0003969 ! spleen B cell follicle [Term] id: UBERON:0004043 name: semicircular canal ampulla def: "the spherical enlargement at the base of each semicircular canal where they connect with the utricle, containing the crista ampullaris which detects movement of the fluid within the canals" [MP:0008488, Wikipedia:Osseous_ampullae] comment: TODO check duct vs canal. Also check FMA - has many subtypes of semicircular canal such as 'ampulla of anterior semicircular canal' synonym: "membraneous ampulla of the semicircular duct" RELATED [MP:0008488] synonym: "semicircular duct ampulla" RELATED [MA:0002770] xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/65/Vestibular_system%27s_semicircular_canal-_a_cross-section.jpg/200px-Vestibular_system%27s_semicircular_canal-_a_cross-section.jpg xref: MA:0002770 xref: SCTID:279759001 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001840 ! semicircular canal relationship: part_of UBERON:0001856 {source="MA"} ! semicircular duct [Term] id: UBERON:0004044 name: anterior visceral endoderm def: "the extraembryonic tissue that is responsible for the proper orientation of the anterior-posterior axis of the embryo and for appropriate patterning of adjacent embryonic tissue" [MP:0008533] comment: see also primitive streak synonym: "AVE" RELATED [BTO:0003361] xref: BTO:0003361 is_a: UBERON:0000478 ! extraembryonic structure is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: develops_from UBERON:0000925 ! endoderm [Term] id: UBERON:0004045 name: tailgut def: "the extension of the hindgut of the primitive digestive tube of the embryo, caudal to the location of the anal opening" [MP:0008787] is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0001046 ! hindgut [Term] id: UBERON:0004046 name: anterior definitive endoderm def: "the mesendoderm which first migrates from the node and which gives rise to the gut" [MP:0008926] comment: TODO - check is_a: UBERON:0000089 ! hypoblast [Term] id: UBERON:0004047 name: basal cistern def: "the enclosed space where the arachnoid membrane stretches between the two temporal lobes and encloses the cerebral peduncles including the structures contained in the interpeduncular fossa" [MP:0009029] xref: EMAPA:19056 xref: EMAPA:19149 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002362 ! arachnoid mater [Term] id: UBERON:0004048 name: pontine cistern def: "the space located on lateral aspects of the pons at the junction with the celebellum" [MP:0009030] xref: EMAPA:18212 xref: FMA:83719 is_a: UBERON:0004050 ! subarachnoid cistern is_a: UBERON:0005219 ! implied link automatically realized ! hindbrain subarachnoid space relationship: part_of UBERON:0000988 ! pons [Term] id: UBERON:0004049 name: cerebellomedullary cistern def: "the largest of the subarachnoid cisterns between the cerebellum and the medulla oblongata; it is divided into a posterior cerebellomedullary cistern [TA] located between the cerebellum and the posterior surface of the medulla (also called cisterna magna), and a lateral cerebellomedullary cistern [TA] located between the cerebellum and the lateral aspect of the medulla." [http://www.drugs.com/dict/cerebellomedullary-cistern.html] synonym: "great cistern" EXACT [FMA:74517] xref: FMA:74517 is_a: UBERON:0000315 ! subarachnoid space is_a: UBERON:0004050 ! subarachnoid cistern [Term] id: UBERON:0004050 name: subarachnoid cistern def: "the widening portions of the subarachnoid space within the cranium where the arachnoid bridges over a depression on the surface of the brain" [MP:0009032] xref: FMA:83717 xref: ncithesaurus:Subarachnoid_Cistern xref: SCTID:314223007 is_a: UBERON:0000315 ! subarachnoid space relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0004051 name: lateral cerebellomedullary cistern def: "the space between the cerebellum and the lateral aspect of the medulla" [MP:0009034] synonym: "cisterna cerebellomedullaris lateralis" EXACT [MP:0009034] xref: FMA:83722 is_a: UBERON:0004049 ! cerebellomedullary cistern relationship: adjacent_to UBERON:0002037 ! cerebellum [Term] id: UBERON:0004052 name: quadrigeminal cistern def: "the enclosed space extending forward between the corpus callosum and the thalamus that contains the internal cerebral veins" [MP:0009035] synonym: "ambient cistern" EXACT [FMA:74511] synonym: "cistern of great cerebral vein" EXACT [FMA:74511] synonym: "cisterna ambiens" EXACT [FMA:74511, FMA:TA] synonym: "cisterna quadrigeminalis" EXACT [FMA:74511, FMA:TA] synonym: "cisterna venae magnae cerebri" EXACT [FMA:74511, FMA:TA] synonym: "superior cistern" EXACT [FMA:74511] xref: FMA:74511 xref: ncithesaurus:Quadrigeminal_Cistern xref: SCTID:56154003 is_a: UBERON:0000464 ! anatomical space is_a: UBERON:0004050 ! subarachnoid cistern relationship: adjacent_to UBERON:0002336 ! corpus callosum [Term] id: UBERON:0004053 name: external male genitalia def: "the external masculine genital organs, including the penis and scrotum" [MP:0009199] subset: organ_slim synonym: "external male genital organ" EXACT [BTO:0003097] synonym: "male external genitalia" EXACT [FMA:45642] synonym: "organa genitalia masculina externa" RELATED [BTO:0003097] xref: BTO:0003097 xref: EMAPA:30977 xref: FMA:45642 xref: galen:MaleExternalGenitalia xref: SCTID:362264000 is_a: UBERON:0003135 ! implied link automatically realized ! male reproductive organ is_a: UBERON:0004176 ! implied link automatically realized ! external reproductive organ relationship: part_of UBERON:0000079 intersection_of: UBERON:0004176 ! external reproductive organ intersection_of: part_of UBERON:0000079 ! male reproductive system disjoint_from: UBERON:0005056 ! external female genitalia [Term] id: UBERON:0004054 name: internal male genitalia def: "the internal masculine genital organs, including the testes, epididymides, deferent ducts, seminal vesicles, prostate, ejaculatory ducts, and bulbourethral glands" [MP:0009205] subset: organ_slim synonym: "internal male genital organ" EXACT [BTO:0003096] synonym: "male internal genitalia" EXACT [FMA:45655] synonym: "organa genitalia masculina interna" RELATED [BTO:0003096] xref: BTO:0003096 xref: FMA:45655 xref: SCTID:310536002 is_a: UBERON:0003135 ! implied link automatically realized ! male reproductive organ is_a: UBERON:0004175 ! implied link automatically realized ! internal reproductive organ relationship: part_of UBERON:0000079 intersection_of: UBERON:0004175 ! internal reproductive organ intersection_of: part_of UBERON:0000079 ! male reproductive system [Term] id: UBERON:0004055 name: primitive pit def: "the small depression in the primitive streak that is caudal to the primitive node where the cells of the epiblast initially begin to invaginate during early embryogenesis" [MP:0009329] comment: TODO - check xref: EHDAA:551 xref: EHDAA2:0001521 xref: ncithesaurus:Primitive_Pit is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0004341 ! primitive streak [Term] id: UBERON:0004056 name: primitive groove def: "the shallow valley that extends along the length of the primitive streak" [MP:0009330] comment: TODO - check xref: EHDAA:547 xref: EHDAA2:0001511 xref: ncithesaurus:Primitive_Groove is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0004341 ! primitive streak [Term] id: UBERON:0004057 name: skeletal muscle fiber triad def: "the skeletal muscle fiber structure comprised of the transverse tubule and the two associated terminal cisternae; each fiber normally has thousands of triads" [MP:0009411] is_a: UBERON:0001134 ! skeletal muscle tissue [Term] id: UBERON:0004058 name: biliary ductule def: "One of the fine terminal elements of the bile duct system, leaving the portal canal, and pursuing a course at the periphery of a lobule of the liver[BTO]. the excretory ducts of the liver that connect the interlobular ductules to the right or left hepatic duct[MP]" [BTO:0002840, MP:0009494] comment: ZFIN: Digestive system duct that collects bile from the canaliculus and transports bile through the liver -- (check if the same) // The smallest and the most peripheral branches of the biliary tree consist of a portal part (portal ductule) and an intralobular part (intralobular ductule) // synonym: "bile capillary" RELATED [BTO:0002840] synonym: "bile ductule" EXACT [BTO:0002840] synonym: "biliary ductule" RELATED [BTO:0002840] synonym: "cholangiole" RELATED [BTO:0002840] xref: BTO:0002840 xref: ZFA:0005164 is_a: UBERON:0000058 ! duct is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003928 ! implied link automatically realized ! digestive system duct relationship: adjacent_to UBERON:0001175 ! common hepatic duct relationship: part_of UBERON:0002107 ! liver relationship: part_of UBERON:0002394 {source="BTO"} ! bile duct [Term] id: UBERON:0004059 name: spinal cord medial motor column def: "the subclasses of motor neurons which project their axons to axial muscles that lie close to the vertebral column; motor neurons in the lateral subdivision of the MMC project their axons to body wall muscles" [MP:0009686] is_a: UBERON:0003990 ! spinal cord motor column [Term] id: UBERON:0004060 name: neural tube ventricular layer def: "the layer of undifferentiated, proliferating cells that line the neural tube lumen" [MP:0009689] synonym: "neural tube ependymal zone" EXACT [MP:0009689] synonym: "neural tube ventricular zone" RELATED [MP:0009689] xref: EMAPA:17152 is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system is_a: UBERON:0000119 ! cell layer is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue is_a: UBERON:0005423 ! developing anatomical structure relationship: adjacent_to UBERON:0003842 ! neural tube lumen relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0001049 ! neural tube [Term] id: UBERON:0004061 name: neural tube mantle layer def: "the layer of glia and differentiating neurons that will form the gray matter of the spinal cord; this lies between the ventricular and marginal layers and includes the basal and alar plates" [MP:0009690] synonym: "neural tube intermediate zone" EXACT [MP:0009690] xref: EMAPA:17148 is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system is_a: UBERON:0000119 ! cell layer is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue is_a: UBERON:0005423 ! developing anatomical structure relationship: adjacent_to UBERON:0004060 ! neural tube ventricular layer relationship: adjacent_to UBERON:0004062 ! neural tube marginal layer relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0001049 ! neural tube [Term] id: UBERON:0004062 name: neural tube marginal layer def: "the outermost layer of the neural tube that contains nerve fibers and will form the white matter" [MP:0009691] synonym: "neural tube marginal zone" EXACT [MP:0009691] xref: EMAPA:17151 is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system is_a: UBERON:0000119 ! cell layer is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0001049 ! neural tube [Term] id: UBERON:0004063 name: spinal cord alar plate def: "the region of the mantle layer of the neural tube that lies dorsal to the sulcus limitans and contains primarily sensory neurons and interneurons involved in communication of sensory impulses; the alar plate develops into the dorsal horn in the grey matter of the spinal cord" [MP:0009692] comment: TODO - merge with UBERON:0003054 roof plate? is_a: UBERON:0005882 ! alar plate [Term] id: UBERON:0004064 name: basal plate def: "the region of the mantle layer of the neural tube that lies ventral to the sulcus limitans and contains primarily motor neurons and interneurons. the region of the neural tube ventral to the sulcus limitans. It extends from the rostral mesencephalon to the end of the spinal cord and contains primarily motor neurons, whereas neurons found in the alar plate are primarily associated with sensory functions. The cell types of the basal plate include lower motor neurons and four types of interneuron. Initially the left and right sides of the basal plate are continuous, but during neurulation they become separated by the floor plate, a derivative of the notochord[WP]." [MP:0009693, Wikipedia:Basal_plate_(neural_tube)] synonym: "basal plate of neural tube" EXACT [Wikipedia:Basal_plate_(neural_tube)] synonym: "spinal cord basal plate" EXACT [MP:0009693] xref: AAO:0010561 xref: EFO:0001904 xref: ncithesaurus:Basal_Plate is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system is_a: UBERON:0002050 ! implied link automatically realized ! embryonic structure relationship: part_of UBERON:0001049 ! neural tube relationship: ventral_to UBERON:0005478 ! sulcus limitans of neural tube [Term] id: UBERON:0004065 name: primordial meninx def: "the outermost mesenchymal covering of the developing brain and spinal cord that is composed of tough fibrous connective tissue from which the arachnoid mater, pia mater and dura mater are formed" [MP:0009726] is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system is_a: UBERON:0003104 ! mesenchyme relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0004066 name: frontonasal prominence alt_id: UBERON:0006237 def: "During embryonic development, two areas of thickened ectoderm, the olfactory areas, appear immediately under the fore-brain in the anterior wall of the stomodeum, one on either side of a region termed the frontonasal prominence (or process)[WP]. By the upgrowth of the surrounding parts these areas are converted into pits, the olfactory pits, which indent the frontonasal prominence and divide it into a medial and two lateral nasal processes[WP]. two areas of thickened ectoderm, the olfactory areas, appear immediately under the fore-brain in the anterior wall of the stomodeum, one on either side of a region termed the frontonasal prominence. an unpaired facial process in the embryo formed from the tissues surrounding the forebrain vesicle that develops into the forehead and bridge of the nose/snout[MP]." [MP:0009901, Wikipedia:Frontonasal_prominence] comment: TODO - improve def xref: EHDAA:4778 xref: EHDAA2:0000581 xref: EMAPA:16681 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/98/Gray44.png/200px-Gray44.png xref: ncithesaurus:Frontonasal_Prominence xref: OG:0001319 xref: SCTID:361486000 is_a: UBERON:0009292 ! embryonic nasal process [Term] id: UBERON:0004067 name: lateral nasal prominence def: "the lateral area of the two branches of a horseshoe-shaped mesenchymal swelling in the future nasal region of the embryo; it separates the olfactory pit from the developing eye and the ala of the nose/snout develops from it" [MP:0009902, Wikipedia:Lateral_nasal_prominence] synonym: "lateral nasal process" EXACT [EHDAA2:0000916] synonym: "lateral nasal swelling" RELATED [UBERON:cjm] synonym: "latero-nasal process" EXACT [EMAPA:16805] xref: EHDAA:4786 xref: EHDAA2:0000916 xref: EMAPA:16805 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2d/Gray48.png/200px-Gray48.png xref: SCTID:308880000 is_a: UBERON:0009292 ! embryonic nasal process relationship: develops_from UBERON:0004066 {source="Wikipedia"} ! frontonasal prominence relationship: part_of UBERON:0004066 {source="EHDAA2"} ! frontonasal prominence [Term] id: UBERON:0004068 name: medial nasal prominence def: "the central area of the two limbs of a horseshoe-shaped mesenchymal swelling that lie medial to the olfactory placode or pit in the future nasal region of the embryo; it joins with the ipsilateral maxillary prominence in the formation of half of the upper jaw, and the nasal tip and philtrum of the upper lip develop from it" [MP:0009903, Wikipedia:Medial_nasal_prominence] comment: Fusion of right and left medial nasal processes forms a primary palate rostrally and the nasal septum caudally. The incisive bone, including upper incisor teeth and the rostral up- per lip, are derived from the primary palate. The nasal septum consists of bone, cartilage, and a patch of soft tissue membrane that separates right & left halves of the nasal cavity. synonym: "medial nasal process" EXACT [EHDAA2:0001076] synonym: "medial nasal swelling" RELATED [UBERON:cjm] synonym: "medial-nasal process" EXACT [EMAPA:16808] xref: EHDAA:4792 xref: EHDAA2:0001076 xref: EMAPA:16808 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/85/Gray45.png/200px-Gray45.png xref: OG:0000804 xref: SCTID:308877001 is_a: UBERON:0009292 ! embryonic nasal process relationship: develops_from UBERON:0004066 {source="Wikipedia"} ! frontonasal prominence relationship: part_of UBERON:0004066 {source="EHDAA2"} ! frontonasal prominence [Term] id: UBERON:0004069 name: accessory olfactory bulb def: "the forebrain region that coordinates sensory signaling arising from the vomeronasal organ; it is located on the dorsal-posterior portion of the main olfactory bulb, and the axons that leave the accessory olfactory bulb project to targets in the amygdala and hypothalamus" [MP:0009945, Wikipedia:Olfactory_bulb#Accessory_olfactory_bulb] synonym: "accessory olfactory formation" RELATED [MA:0000966] synonym: "olfactory bulb accessory nucleus" EXACT [NIF_GrossAnatomy:nlx_anat_20090453] xref: ABA:AOB xref: BTO:0004797 xref: MA:0000966 xref: NIF_GrossAnatomy:nlx_anat_20090453 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0002264 {source="cjm"} ! olfactory bulb relationship: part_of UBERON:0005366 {source="MA"} ! olfactory lobe relationship: spatially_disjoint_from UBERON:0002266 {source="ABA"} ! anterior olfactory nucleus relationship: spatially_disjoint_from UBERON:0002590 {source="ABA"} ! prepyriform area relationship: spatially_disjoint_from UBERON:0002893 {source="ABA"} ! nucleus of lateral olfactory tract [Term] id: UBERON:0004070 name: cerebellum vermis lobule def: "the region of a cerebellar lobule that resides in the central section of the cerebellum between the two hemispheres; in humans, vermis lobule regions may be nearly continuous with the cerebellar hemisphere lobules dorsally but are separated by deeper longitudinal fissues in the ventral regions; in mammals, the vermis portion of the cerebellum has a foliation pattern along the AP axis that is distinct from the lateral cerebellar hemispheres" [MP:0009957] comment: TODO - define as a region overlapping xref: MA:0002968 xref: NIF_GrossAnatomy:nlx_anat_20081223 is_a: UBERON:0004004 ! implied link automatically realized ! cerebellum lobule relationship: part_of UBERON:0004720 intersection_of: UBERON:0004004 ! cerebellum lobule intersection_of: part_of UBERON:0004720 ! cerebellar vermis [Term] id: UBERON:0004071 name: cerebellum emboliform nucleus def: "the small wedge shaped nucleus interposed between the dentate and fastigial nuclei; it receives axons from Purkinje cells of the intermediate area of the cerebral hemispheres and most of its efferent connections travel via the superior cerebellar peduncle" [MP:0009981] xref: SCTID:279222003 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0004072 name: cerebellum globose nucleus def: "the two or three small masses of gray matter that is located medial to the emboliform nucleus and lateral to the fastigial nucleus; it receives axons from the intermediate area of the cerebellar hemispheres and its afferents exit through the superior cerebellar peduncle; it is recognized in human cerebellum but is not distinguishable in all mammalian species" [MP:0009982] xref: SCTID:279223008 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0004073 name: cerebellum interpositus nucleus def: "the nucelus composed of the globose and emoliform nuclei of the cerebellum; in some mammalian species the globose nucleus is not distinguishable" [MP:0009984] is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0004074 name: cerebellum vermis lobule I def: "." [MP:0009988] comment: TODO FMA:61904 lingual gyrus FMA:71032 lingula gyrus (lg) synonym: "lingula" RELATED [MA:0000998] synonym: "lingula (I)" EXACT [ABA:LING] synonym: "lingula of anterior cerebellum vermis" EXACT [] synonym: "lingula of cerebellum" EXACT [] synonym: "lobule I of cerebellum vermis" EXACT [] synonym: "neuraxis lingula" EXACT [] xref: ABA:LING xref: FMA:83884 xref: MA:0000998 xref: NIF_GrossAnatomy:birnlex_932 xref: SCTID:77232000 is_a: UBERON:0004070 {source="MA"} ! cerebellum vermis lobule relationship: part_of UBERON:0002037 ! cerebellum relationship: part_of UBERON:0003941 ! cerebellum anterior vermis [Term] id: UBERON:0004075 name: cerebellum vermis lobule II def: "." [MP:0009989] comment: central vs alar central? II and III? part_of CENT in ABA synonym: "central lobule" BROAD [MA:0000999] synonym: "central lobule of cerebellum" BROAD [] synonym: "lobule II" EXACT [ABA:CENT2] synonym: "lobule II of cerebellum vermis" EXACT [] synonym: "vermic lobule II" EXACT [NIF_GrossAnatomy:nlx_anat_20081225] xref: ABA:CENT2 xref: MA:0000999 xref: NIF_GrossAnatomy:nlx_anat_20081225 is_a: UBERON:0004070 {source="MA"} ! cerebellum vermis lobule relationship: part_of UBERON:0003021 {source="ABA"} ! central lobule relationship: part_of UBERON:0003941 {source="MA"} ! cerebellum anterior vermis [Term] id: UBERON:0004076 name: cerebellum vermis lobule III def: "." [MP:0009990] comment: II or III? synonym: "central lobule" BROAD [MA:0001000] synonym: "central lobule of cerebellum" BROAD [] synonym: "lobule III" EXACT [ABA:CENT3] synonym: "lobule III of cerebellum vermis" EXACT [] xref: ABA:CENT3 xref: MA:0001000 xref: NIF_GrossAnatomy:nlx_anat_20081226 is_a: UBERON:0004070 {source="MA"} ! cerebellum vermis lobule relationship: part_of UBERON:0002037 ! cerebellum relationship: part_of UBERON:0003021 {source="ABA"} ! central lobule relationship: part_of UBERON:0003941 ! cerebellum anterior vermis [Term] id: UBERON:0004077 name: cerebellum vermis lobule IV def: "The culmen is the portion of the anterior vermis adjacent to the primary fissure of cerebellum. The culmen and the anterior parts of the quadrangular lobules form the lobus culminis[WP]." [MP:0009991, Wikipedia:Culmen_(cerebellum)] synonym: "culmen of cerebellum" BROAD [] synonym: "lobule IV of cerebellum vermis" EXACT [] synonym: "neuraxis culmen" BROAD [FMA:83886] xref: ABA:CUL4 xref: MA:0001001 xref: NIF_GrossAnatomy:nlx_anat_20081227 is_a: UBERON:0004070 {source="MA"} ! cerebellum vermis lobule relationship: part_of UBERON:0007763 {source="ABA"} ! cerebellum culmen relationship: spatially_disjoint_from UBERON:0003021 {source="ABA"} ! central lobule [Term] id: UBERON:0004078 name: cerebellum vermis lobule IX def: "." [MP:0009992] synonym: "cerebellar posterior vermis lobule IX" EXACT [PMID:2022820] synonym: "lobule IX of cerebellar posterior vermis" EXACT [PMID:2022820] synonym: "lobule IX of cerebellum vermis" EXACT [] synonym: "neuraxis uvula" EXACT [FMA:83883] synonym: "uvula (IX)" EXACT [ABA:UVU] synonym: "uvula [vermis]" EXACT [] synonym: "uvula of cerebellum" EXACT [FMA:83883] synonym: "uvula of vermis of cerebellum" EXACT [] synonym: "vermic lobule IX" EXACT [NIF_GrossAnatomy:nlx_anat_20081234] xref: ABA:UVU xref: FMA:83883 xref: MA:0001006 xref: NIF_GrossAnatomy:nlx_anat_20081234 is_a: UBERON:0004070 {source="MA"} ! cerebellum vermis lobule relationship: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0004079 name: cerebellum vermis lobule V def: "." [MP:0009993] synonym: "culmen" BROAD [MA:0001002] synonym: "culmen of cerebellum" BROAD [] synonym: "lobule V" EXACT [ABA:CUL5] synonym: "lobule V of cerebellum vermis" EXACT [] synonym: "neuraxis culmen" BROAD [FMA:83886] xref: ABA:CUL5 xref: MA:0001002 xref: NIF_GrossAnatomy:nlx_anat_20081228 is_a: UBERON:0004070 {source="MA"} ! cerebellum vermis lobule relationship: part_of UBERON:0007763 {source="ABA"} ! cerebellum culmen [Term] id: UBERON:0004080 name: cerebellum vermis lobule VI alt_id: UBERON:0000909 alt_id: UBERON:Declive-MA_0001003 def: "." [MP:0009994] synonym: "declive" BROAD [MA:0001003] synonym: "declive (VI)" EXACT [ABA:DEC] synonym: "declive of cerebellum" EXACT [] synonym: "declive of vermis of cerebellum" EXACT [] synonym: "lobule VI of cerebellum vermis" EXACT [] synonym: "neuraxis declive" EXACT [FMA:83887] synonym: "vermic lobule vi" EXACT [NIF_GrossAnatomy:nlx_anat_20081229] xref: ABA:DEC xref: FMA:83887 xref: MA:0001003 xref: NIF_GrossAnatomy:nlx_anat_20081229 xref: SCTID:279385000 is_a: UBERON:0004070 {source="MA"} ! cerebellum vermis lobule relationship: part_of UBERON:0002037 ! cerebellum relationship: part_of UBERON:0004009 ! cerebellum posterior vermis [Term] id: UBERON:0004081 name: cerebellum vermis lobule VII def: "The folium vermis is a short, narrow, concealed band at the posterior extremity of the vermis, consisting apparently of a single folium, but in reality marked on its upper and under surfaces by secondary fissures. Laterally, it expands in either hemisphere into a considerable lobule, the superior semilunar lobule (lobulus semilunaris superior; postero-superior lobules), which occupies the posterior third of the upper surface of the hemisphere, and is bounded below by the horizontal sulcus. The superior semilunar lobules and the folium vermis form the lobus semilunaris." [MP:0009995, Wikipedia:Folium_(vermis)] comment: check MA, MP, FMA, folium? synonym: "folium" BROAD [MA:0001004] synonym: "folium lobule" NARROW [MP:0009995] synonym: "folium of cerebellum" EXACT [] synonym: "folium of vermis of cerebellum" EXACT [] synonym: "folium-tuber vermis (VII)" EXACT [ABA:FOTU] synonym: "lobule VII of cerebellum vermis" EXACT [] synonym: "neuraxis folium" EXACT [FMA:83889] synonym: "vermic lobule VII" EXACT [NIF_GrossAnatomy:nlx_anat_20081230] xref: ABA:FOTU xref: FMA:83889 xref: MA:0001004 xref: NIF_GrossAnatomy:nlx_anat_20081230 xref: SCTID:369044003 is_a: UBERON:0004070 {source="MA"} ! cerebellum vermis lobule relationship: part_of UBERON:0002037 ! cerebellum relationship: part_of UBERON:0004009 ! cerebellum posterior vermis [Term] id: UBERON:0004082 name: cerebellum vermis lobule VIII alt_id: UBERON:0002312 alt_id: UBERON:FMA_83888-MA_0001005 def: "." [MP:0009996] synonym: "cerebellum lobule VIII" EXACT [] synonym: "lobule VIII of cerebellum vermis" EXACT [] synonym: "neuraxis pyramis" EXACT [] synonym: "neuraxis pyramus" EXACT [] synonym: "pyramis" EXACT [NIF_GrossAnatomy:nlx_anat_20081233] synonym: "pyramis of vermis of cerebellum" EXACT [FMA:83888] synonym: "pyramus" BROAD [MA:0001005] synonym: "pyramus" RELATED [] synonym: "pyramus (VIII)" EXACT [ABA:PYR] synonym: "pyramus of cerebellum" EXACT [] synonym: "pyramus of vermis of cerebellum" EXACT [FMA:83888] synonym: "vermic lobule VIII" EXACT [NIF_GrossAnatomy:nlx_anat_20081233] xref: ABA:PYR xref: FMA:83888 xref: MA:0001005 xref: NIF_GrossAnatomy:nlx_anat_20081233 is_a: UBERON:0004070 {source="MA"} ! cerebellum vermis lobule relationship: part_of UBERON:0002037 ! cerebellum relationship: part_of UBERON:0004009 ! cerebellum posterior vermis [Term] id: UBERON:0004083 name: cerebellum vermis lobule X def: "." [MP:0009997] synonym: "lobule X of cerebellum vermis" EXACT [] synonym: "neuraxis nodulus" EXACT [] synonym: "nodulus" BROAD [MA:0001007] synonym: "nodulus (X)" EXACT [ABA:NOD] synonym: "nodulus of cerebellum" EXACT [] synonym: "nodulus of vermis of cerebellum" EXACT [] xref: ABA:NOD xref: FMA:83882 xref: MA:0001007 xref: NIF_GrossAnatomy:birnlex_1165 is_a: UBERON:0004070 {source="MA"} ! cerebellum vermis lobule relationship: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0004084 name: labium def: "the folds of skin which form the inner lips (labia minora) on both sides of the vaginal opening " [MP:0003520] synonym: "labia" EXACT [] xref: EMAPA:30837 xref: galen:Labia xref: MA:0002464 xref: ncithesaurus:Labium is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0000996 ! vagina relationship: part_of UBERON:0000997 ! mammalian vulva [Term] id: UBERON:0004085 name: labia majora def: "The labia majora are two prominent longitudinal cutaneous folds which extend downward and backward from the mons pubis to the perineum and form the lateral boundaries of the cleft of venus, which contains the labia minora, interlabial sulci, clitoral hood, clitoral glans, frenulum clitoridis, the Hart's Line, and the vulval vestibule, which contains the external openings of the urethra and the vagina. Each labium majus has two surfaces, an outer, pigmented and covered with strong, crisp hairs; and an inner, smooth and beset with large sebaceous follicles. Between the two there is a considerable quantity of areolar tissue, fat, and a tissue resembling the dartos tunic of the scrotum, besides vessels, nerves, and glands. The Labia Majora are thicker in front, where they form by their meeting the anterior commisure of the labia majora. Posteriorly they are not really joined, but appear to become lost in the neighboring integument, ending close to — and nearly parallel with — each other. Together with the connecting skin between them, they form the posterior commisure of the labia majora or posterior boundary of the pudendum. The interval between the posterior commissure of the labia majora and the anus, from 2.5 to 3 cm. in length, constitutes the perineum. The labia majora correspond to the scrotum in the male. Between the labia majora and the inner thighs are the labiocrural folds. Between the labia majora and labia minora are the interlabial sulci. [WP,unvetted]." [Wikipedia:Labia_majora] synonym: "labium majora" EXACT [] synonym: "labium majorum" EXACT [] synonym: "labium majus" EXACT [] xref: FMA:20367 xref: galen:LabiaMajora xref: MA:0002844 xref: ncithesaurus:Labium_Majus xref: SCTID:362237001 is_a: UBERON:0004084 ! labium [Term] id: UBERON:0004086 name: brain ventricle def: "one of the system of communicating cavities in the brain that are continuous with the central canal of the spinal cord, that like it are derived from the medullary canal of the embryo, that are lined with an epithelial ependyma, and that contain a serous fluid" [] comment: Note that FMA draws the distinction between e.g. 'fourth ventricle' and 'cavity of fourth ventricle'. The former is a cavity, and part of the latter, which is a region. The superclass of 'fourth ventricle' is_a 'region of ventricular system of the brain'. We place this class here, although it is not equivalent to ventricles, as it includes ventricle bodies. synonym: "cerebral ventricle" EXACT [HP:0002118] synonym: "region of ventricular system of brain" EXACT [FMA:78447] xref: BTO:0001442 xref: EFO:0001914 xref: EV:0100306 xref: FMA:78447 xref: MA:0000818 xref: MESH:A.08.186.211.276 xref: ncithesaurus:Ventricle_Brain xref: NIF_GrossAnatomy:birnlex_1356 xref: OpenCyc:Mx4rvmTY65wpEbGdrcN5Y29ycA xref: SCTID:180929003 is_a: UBERON:0003947 ! implied link automatically realized ! brain ventricle/choroid plexus is_a: UBERON:0005358 ! ventricle of nervous system relationship: part_of UBERON:0005282 ! ventricular system of brain [Term] id: UBERON:0004087 name: vena cava def: "The superior and inferior vena cava are collectively called the venae cavae. They are the veins that return deoxygenated blood from the body into the heart. They both empty into the right atrium. The inferior vena cava (or posterior vena cava in animals) travels up alongside the abdominal aorta with blood from the lower part of the body (see # 11 in the diagram). It is the largest vein in the body. The superior vena cava (or anterior vena cava in animals) is above the heart, and forms from a convergence of the left and right brachiocephalic veins that contain blood from the head and the arms (see # 3 in the diagram). [WP,unvetted]." [Wikipedia:Venae_cavae] xref: AAO:0010215 xref: BTO:0001438 xref: EMAPA:18415 xref: GAID:547 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7c/Heart_numlabels.png/200px-Heart_numlabels.png xref: MA:0000068 xref: MESH:A.07.231.908.949 xref: ncithesaurus:Vena_Cava xref: OpenCyc:Mx4rkJQ4U6gEEdudWQACs5b6Bw xref: SCTID:244405007 is_a: UBERON:0001638 ! vein is_a: UBERON:0003479 ! implied link automatically realized ! thoracic cavity vein relationship: part_of UBERON:0002224 ! thoracic cavity [Term] id: UBERON:0004088 name: ocular region def: "." [HP:0000284] comment: in HP covers eyelid, eyebrow synonym: "eye region" EXACT [OBOL:automatic] is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0001456 ! face [Term] id: UBERON:0004089 name: midface def: "the middle of the face including the nose and its associated bony structures[MW]." [HP:0000309, http://www.merriam-webster.com/medical/midface] comment: editors note: this class is currently a union of the snout (e.g. in mouse), the midface and the lower face. Note that in MA, snout includes the whole jaw and should thus be more alike the lower face than the midface, so its placement here is not strictly accurate. In future we might introduce specific classes for each of these, and include the full parthood relationships. if this is done, then care should be taken to preserve inferences such as an abnormality of the lower face being an abnormality of the midface. synonym: "lower face" RELATED [] synonym: "midface/lower face" RELATED [] synonym: "snout" RELATED SENSU [MA:0001910] xref: MA:0001910 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0001456 ! face [Term] id: UBERON:0004090 name: periorbital region def: "." [HP:0000606] synonym: "periorbita" EXACT [FMA:59351] synonym: "periorbital area" EXACT [MA:0002875] xref: FMA:59351 xref: MA:0002875 xref: SCTID:362646004 is_a: UBERON:0000479 ! tissue relationship: has_part UBERON:0002515 ! periosteum relationship: part_of UBERON:0001456 ! face relationship: surrounds UBERON:0004867 ! orbital cavity [Term] id: UBERON:0004092 name: hypothalamus-pituitary axis def: "." [HP:0000864] is_a: UBERON:0000015 ! anatomical boundary relationship: part_of UBERON:0000949 ! endocrine system [Term] id: UBERON:0004095 name: corticospinal tract def: "The corticospinal or pyramidal tract is a collection of axons that travel between the cerebral cortex of the brain and the spinal cord. The corticospinal tract mostly contains motor axons. It actually consists of two separate tracts in the spinal cord: the lateral corticospinal tract and the medial corticospinal tract. An understanding of these tracts leads to an understanding of why for the most part, one side of the body is controlled by the opposite side of the brain. Also the corticobulbar tract is considered to be a pyramidal tract. The corticobulbar tract carries signals that control motor neurons located in cranial nerve brain nuclei rather than motor neurons located in the spinal cord. The neurons of the pyramidal tracts are pyramidal neurons, but that is not how the pyramidal tract got its name, as most of the pyramidal neurons send their axons elsewhere. Instead, it got its name from the shape of the corticospinal axon tracts: when the pyramidal tract passes the medulla, it forms a dense bundle of nerve fibres that is shaped somewhat like a pyramid. [WP,unvetted]." [HP:0002492, Wikipedia:Corticospinal_tract] xref: BM:CST xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ac/Gray684.png/200px-Gray684.png is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0002707 ! pyramidal tract [Term] id: UBERON:0004096 name: odontoid process alt_id: UBERON:0005210 def: "The toothlike process on the upper surface of the axis, which articulates with the atlas above[GAID]." [GAID:238, HP:0003310, Wikipedia:Wikipedia\:Dens_(anatomy)] comment: TODO check AAO:0000721 odontoid_process -- Anterior process located between the atlantal cotyles that projects into the foramen magnum of the skull and bears facets that articulate with the lateral walls of the foramen synonym: "axis dens" EXACT [FMA:24043] synonym: "axis odontoid process" EXACT [MA:0002872] synonym: "cervical vertebra 2 odontoid process" EXACT [MA:0002872] synonym: "dens" EXACT [EMAPA:26535] synonym: "dens of axis" EXACT [FMA:24043] synonym: "odontoid" RELATED [Wikipedia:Wikipedia\:Dens_(anatomy)] synonym: "odontoid process of axis" EXACT [FMA:24043] xref: AAO:0000721 xref: EMAPA:26535 xref: FMA:24043 xref: GAID:238 xref: MA:0002872 xref: MESH:A.02.835.232.834.151.383.668 xref: ncithesaurus:Odontoid_Process xref: OpenCyc:Mx4rwIYGoJwpEbGdrcN5Y29ycA xref: SCTID:181899003 is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:0001093 ! second cervical vertebra [Term] id: UBERON:0004097 name: renin-aldosterone axis def: "." [HP:0003350] is_obsolete: true [Term] id: UBERON:0004098 name: tibial plateaux def: "." [HP:0003832] is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0000979 ! tibia [Term] id: UBERON:0004099 name: joint spaces of the elbow def: "Joint cavity shared by all the joints of the elbow. The elbow joint is a compound joint that actually comprises three separate joints: the joints connecting the upper and lower arm: 1) Articulatio humero-ulnaris and 2) Articulatio humero-radialis as well as the proximal joint connecting the forarm bones: 3) Articulatio radio-ulnaris proximalis. All three share a joint cavity which is highly sinuated/scalloped/coved. Joint spaces of the elbow summarizes the joint cavity shared by all three adjoining joints of the elbow joint." [HP:0003943] is_a: UBERON:0000464 ! implied link automatically realized ! anatomical space relationship: part_of UBERON:0001490 intersection_of: UBERON:0000464 ! anatomical space intersection_of: part_of UBERON:0001490 ! elbow joint [Term] id: UBERON:0004100 name: renal collecting system def: "The collecting duct system of the kidney consists of a series of tubules and ducts that connect the nephrons to the ureter. It participates in electrolyte and fluid balance through reabsorption and excretion, processes regulated by the hormones aldosterone and antidiuretic hormone." [HP:0004742, Wikipedia:Collecting_duct_system] synonym: "collecting_duct_system" EXACT [Wikipedia:Collecting_duct_system] xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/27/Gray1128.png/200px-Gray1128.png is_a: UBERON:0000467 ! anatomical system is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0002113 ! kidney [Term] id: UBERON:0004101 name: nasolabial region def: "." [HP:0005289] is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0000004 ! olfactory apparatus [Term] id: UBERON:0004102 name: tracheobronchial system def: "." [HP:0005607] is_a: UBERON:0000467 ! anatomical system relationship: has_part UBERON:0002185 ! bronchus relationship: has_part UBERON:0003126 ! trachea relationship: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0004103 name: alveolar ridge def: "one of the two jaw ridges either on the roof of the mouth between the upper teeth and the hard palate or on the bottom of the mouth behind the lower teeth[WP]. The alveolar ridges contain the sockets (alveoli) of the teeth[HP]." [HP:0006477, Wikipedia:Alveolar_ridge] comment: note that in BTO, this is part of an embryo synonym: "alveolar body" EXACT [MP:0004189] synonym: "alveolar bone" EXACT [MP:0004189] synonym: "alveolar margin" EXACT [] synonym: "alveolar process" EXACT [GAID:215] xref: BTO:0001383 xref: GAID:215 xref: MESH:A.02.835.232.781.324.502.125 xref: SCTID:245790000 is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001708 ! jaw [Term] id: UBERON:0004104 name: hairline def: "." [HP:0009553] is_a: UBERON:0000061 ! anatomical structure relationship: adjacent_to UBERON:0001037 ! strand of hair relationship: part_of UBERON:0000033 ! head [Term] id: UBERON:0004105 name: subungual region def: "." [HP:0009723] is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001705 ! nail [Term] id: UBERON:0004106 name: crus of ear def: "horizontal piece of cartilage located outside the ear canal that divides the upper and lower parts of the ear." [HP:0009895] synonym: "crus helicis" EXACT [FMA:61024, FMA:TA] synonym: "crus of helical part of auricular cartilage" EXACT [] synonym: "crus of helix" EXACT [FMA:61024] xref: FMA:61024 xref: ncithesaurus:Crus_Helicis xref: SCTID:362547004 is_a: UBERON:0001867 ! implied link automatically realized ! cartilage of external ear is_a: UBERON:0002418 ! cartilage tissue relationship: part_of UBERON:0001691 ! external ear [Term] id: UBERON:0004108 name: clivus of occipital bone def: "Part of the cranium, the clivus is a shallow depression behind the dorsum sellC& that slopes obliquely backward. It forms a gradual sloping process at the anterior most portion of the basilar occipital bone at its junction with the sphenoid bone. On axial planes, it sits just posterior to the sphenoid sinuses. Just lateral to the clivus bilaterally is the foramen lacerum which contains the internal carotid artery, proximal to its anastamosis with the Circle of Willis. Posterior to the clivus is the basilar artery. The clivus supports the upper part of the pons." [HP:0010558, Wikipedia:Clivus_%28anatomy%29] comment: The clivus is an important landmark for checking for anatomical atlanto-occipital alignment; the clivus, when viewed on a lateral C-spine X-ray, forms a line which, if extended, is known as Wackenheim's clivus line. Wackenheim's clivus line should pass through the dens of the axis or be tangential to it. Editor note: check relationships. synonym: "clivus" EXACT [HP:0010558] synonym: "occipital bone clivus" EXACT [FMA:75747] synonym: "Wackenheim's clivus line" RELATED [Wikipedia:Clivus_%28anatomy%29] xref: FMA:75747 xref: ncithesaurus:Clivus xref: SCTID:361736007 is_a: UBERON:0000032 ! implied link automatically realized ! cranial structure is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ relationship: adjacent_to UBERON:0001677 {source="Wikipedia"} ! sphenoid bone relationship: part_of UBERON:0001676 {source="FMA"} ! occipital bone relationship: part_of UBERON:0008788 {source="HP:0010558"} ! posterior cranial fossa [Term] id: UBERON:0004109 name: cortex of humerus def: "." [HP:0010629] synonym: "compact bone of humerus" EXACT [FMA:31542] synonym: "cortex of the humerus" EXACT [] synonym: "humerus compact bone" EXACT [] synonym: "humerus cortical bone" EXACT [] xref: FMA:31542 is_a: UBERON:0001439 ! implied link automatically realized ! compact bone is_a: UBERON:0004269 ! implied link automatically realized ! upper arm connective tissue is_a: UBERON:0005808 ! implied link automatically realized ! bone tissue of long bone relationship: part_of UBERON:0000976 intersection_of: UBERON:0001439 ! compact bone intersection_of: part_of UBERON:0000976 ! humerus [Term] id: UBERON:0004110 name: midnasal cavity def: "includes the cavity between the nares and the choanae." [HP:0010641] is_a: UBERON:0002553 ! anatomical cavity relationship: adjacent_to UBERON:0004771 ! posterior nasal aperture relationship: adjacent_to UBERON:0005928 ! external naris relationship: part_of UBERON:0001707 ! nasal cavity [Term] id: UBERON:0004111 name: anatomical conduit def: "any opening in the body." [Wikipedia:Foramen] comment: note that FMA has both conduit and conduit space synonym: "foramen" NARROW [EHDAA2:0003080] synonym: "foramina" NARROW PLURAL [UBERON:cjm] xref: AEO:0000080 xref: EHDAA2:0003080 xref: FMA:242873 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0004112 name: muscle of middle ear def: "A muscle of head that is part of a tympanic cavity [Obol]." [OBOL:automatic] comment: check tympanic cavity vs middle ear. the same for muscles? synonym: "adult head muscle organ of anatomical cavity of middle ear" EXACT [OBOL:automatic] synonym: "adult head muscle organ of cavity of middle ear" EXACT [OBOL:automatic] synonym: "adult head muscle organ of middle ear anatomical cavity" EXACT [OBOL:automatic] synonym: "adult head muscle organ of middle ear cavity" EXACT [OBOL:automatic] synonym: "adult head muscle organ of tympanic cavity" EXACT [OBOL:automatic] synonym: "anatomical cavity of middle ear adult head muscle organ" EXACT [OBOL:automatic] synonym: "anatomical cavity of middle ear cephalic musculature" EXACT [OBOL:automatic] synonym: "anatomical cavity of middle ear head muscle" EXACT [OBOL:automatic] synonym: "anatomical cavity of middle ear head muscle organ" EXACT [OBOL:automatic] synonym: "anatomical cavity of middle ear muscle of head" EXACT [OBOL:automatic] synonym: "anatomical cavity of middle ear muscle organ of adult head" EXACT [OBOL:automatic] synonym: "anatomical cavity of middle ear muscle organ of head" EXACT [OBOL:automatic] synonym: "anatomical cavity of middle ear musculus caput" EXACT [OBOL:automatic] synonym: "cavity of middle ear adult head muscle organ" EXACT [OBOL:automatic] synonym: "cavity of middle ear cephalic musculature" EXACT [OBOL:automatic] synonym: "cavity of middle ear head muscle" EXACT [OBOL:automatic] synonym: "cavity of middle ear head muscle organ" EXACT [OBOL:automatic] synonym: "cavity of middle ear muscle of head" EXACT [OBOL:automatic] synonym: "cavity of middle ear muscle organ of adult head" EXACT [OBOL:automatic] synonym: "cavity of middle ear muscle organ of head" EXACT [OBOL:automatic] synonym: "cavity of middle ear musculus caput" EXACT [OBOL:automatic] synonym: "cephalic musculature of anatomical cavity of middle ear" EXACT [OBOL:automatic] synonym: "cephalic musculature of cavity of middle ear" EXACT [OBOL:automatic] synonym: "cephalic musculature of middle ear anatomical cavity" EXACT [OBOL:automatic] synonym: "cephalic musculature of middle ear cavity" EXACT [OBOL:automatic] synonym: "cephalic musculature of tympanic cavity" EXACT [OBOL:automatic] synonym: "head muscle of anatomical cavity of middle ear" EXACT [OBOL:automatic] synonym: "head muscle of cavity of middle ear" EXACT [OBOL:automatic] synonym: "head muscle of middle ear anatomical cavity" EXACT [OBOL:automatic] synonym: "head muscle of middle ear cavity" EXACT [OBOL:automatic] synonym: "head muscle of tympanic cavity" EXACT [OBOL:automatic] synonym: "head muscle organ of anatomical cavity of middle ear" EXACT [OBOL:automatic] synonym: "head muscle organ of cavity of middle ear" EXACT [OBOL:automatic] synonym: "head muscle organ of middle ear anatomical cavity" EXACT [OBOL:automatic] synonym: "head muscle organ of middle ear cavity" EXACT [OBOL:automatic] synonym: "head muscle organ of tympanic cavity" EXACT [OBOL:automatic] synonym: "middle ear anatomical cavity adult head muscle organ" EXACT [OBOL:automatic] synonym: "middle ear anatomical cavity cephalic musculature" EXACT [OBOL:automatic] synonym: "middle ear anatomical cavity head muscle" EXACT [OBOL:automatic] synonym: "middle ear anatomical cavity head muscle organ" EXACT [OBOL:automatic] synonym: "middle ear anatomical cavity muscle of head" EXACT [OBOL:automatic] synonym: "middle ear anatomical cavity muscle organ of adult head" EXACT [OBOL:automatic] synonym: "middle ear anatomical cavity muscle organ of head" EXACT [OBOL:automatic] synonym: "middle ear anatomical cavity musculus caput" EXACT [OBOL:automatic] synonym: "middle ear cavity adult head muscle organ" EXACT [OBOL:automatic] synonym: "middle ear cavity cephalic musculature" EXACT [OBOL:automatic] synonym: "middle ear cavity head muscle" EXACT [OBOL:automatic] synonym: "middle ear cavity head muscle organ" EXACT [OBOL:automatic] synonym: "middle ear cavity muscle of head" EXACT [OBOL:automatic] synonym: "middle ear cavity muscle organ of adult head" EXACT [OBOL:automatic] synonym: "middle ear cavity muscle organ of head" EXACT [OBOL:automatic] synonym: "middle ear cavity musculus caput" EXACT [OBOL:automatic] synonym: "muscle of head of anatomical cavity of middle ear" EXACT [OBOL:automatic] synonym: "muscle of head of cavity of middle ear" EXACT [OBOL:automatic] synonym: "muscle of head of middle ear anatomical cavity" EXACT [OBOL:automatic] synonym: "muscle of head of middle ear cavity" EXACT [OBOL:automatic] synonym: "muscle of head of tympanic cavity" EXACT [OBOL:automatic] synonym: "muscle of tympanic cavity" EXACT [] synonym: "muscle organ of adult head of anatomical cavity of middle ear" EXACT [OBOL:automatic] synonym: "muscle organ of adult head of cavity of middle ear" EXACT [OBOL:automatic] synonym: "muscle organ of adult head of middle ear anatomical cavity" EXACT [OBOL:automatic] synonym: "muscle organ of adult head of middle ear cavity" EXACT [OBOL:automatic] synonym: "muscle organ of adult head of tympanic cavity" EXACT [OBOL:automatic] synonym: "muscle organ of head of anatomical cavity of middle ear" EXACT [OBOL:automatic] synonym: "muscle organ of head of cavity of middle ear" EXACT [OBOL:automatic] synonym: "muscle organ of head of middle ear anatomical cavity" EXACT [OBOL:automatic] synonym: "muscle organ of head of middle ear cavity" EXACT [OBOL:automatic] synonym: "muscle organ of head of tympanic cavity" EXACT [OBOL:automatic] synonym: "musculus caput of anatomical cavity of middle ear" EXACT [OBOL:automatic] synonym: "musculus caput of cavity of middle ear" EXACT [OBOL:automatic] synonym: "musculus caput of middle ear anatomical cavity" EXACT [OBOL:automatic] synonym: "musculus caput of middle ear cavity" EXACT [OBOL:automatic] synonym: "musculus caput of tympanic cavity" EXACT [OBOL:automatic] synonym: "tympanic cavity adult head muscle organ" EXACT [OBOL:automatic] synonym: "tympanic cavity cephalic musculature" EXACT [OBOL:automatic] synonym: "tympanic cavity head muscle" EXACT [OBOL:automatic] synonym: "tympanic cavity head muscle organ" EXACT [OBOL:automatic] synonym: "tympanic cavity muscle" EXACT [] synonym: "tympanic cavity muscle of head" EXACT [OBOL:automatic] synonym: "tympanic cavity muscle organ of adult head" EXACT [OBOL:automatic] synonym: "tympanic cavity muscle organ of head" EXACT [OBOL:automatic] synonym: "tympanic cavity musculus caput" EXACT [OBOL:automatic] xref: MA:0000256 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002376 ! muscle of head relationship: part_of UBERON:0004114 intersection_of: UBERON:0002376 ! muscle of head intersection_of: part_of UBERON:0004114 ! tympanic cavity relationship: part_of UBERON:0004114 ! tympanic cavity [Term] id: UBERON:0004113 name: muscle of auditory ossicle synonym: "auditory ossicles muscle" EXACT [FMA:49026] synonym: "muscle of auditory ossicles" EXACT [FMA:49026] synonym: "ossicular muscle" EXACT [FMA:49026] xref: FMA:49026 xref: SCTID:244778009 is_a: UBERON:0002376 ! muscle of head relationship: attached_to UBERON:0001686 intersection_of: UBERON:0002376 ! muscle of head intersection_of: attached_to UBERON:0001686 ! auditory ossicle relationship: attached_to UBERON:0001686 ! auditory ossicle [Term] id: UBERON:0004114 name: tympanic cavity def: "small cavity surrounding the bones of the middle ear." [Wikipedia:Tympanic_cavity] synonym: "anatomical cavity of middle ear" EXACT [OBOL:automatic] synonym: "cavity of middle ear" EXACT [OBOL:automatic] synonym: "middle ear anatomical cavity" EXACT [OBOL:automatic] synonym: "middle ear cavity" EXACT [OBOL:automatic] synonym: "tympanum" RELATED [BTO:0002098] xref: BTO:0002098 xref: EHDAA2:0004119 xref: EV:0100358 xref: FMA:56461 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/19/Gray923.png/200px-Gray923.png xref: SCTID:362551002 is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0001756 intersection_of: UBERON:0002553 ! anatomical cavity intersection_of: part_of UBERON:0001756 ! middle ear relationship: develops_from UBERON:0004117 ! pharyngeal pouch relationship: develops_from UBERON:0005625 {source="EHDAA2"} ! tubotympanic recess [Term] id: UBERON:0004115 name: blood vessel of tympanic cavity def: "A blood vessel that is part of a tympanic cavity [Obol]." [OBOL:automatic] synonym: "anatomical cavity of middle ear blood vessel" EXACT [OBOL:automatic] synonym: "blood vessel of anatomical cavity of middle ear" EXACT [OBOL:automatic] synonym: "blood vessel of cavity of middle ear" EXACT [OBOL:automatic] synonym: "blood vessel of middle ear anatomical cavity" EXACT [OBOL:automatic] synonym: "blood vessel of middle ear cavity" EXACT [OBOL:automatic] synonym: "cavity of middle ear blood vessel" EXACT [OBOL:automatic] synonym: "middle ear anatomical cavity blood vessel" EXACT [OBOL:automatic] synonym: "middle ear blood vessel" EXACT [] synonym: "middle ear cavity blood vessel" EXACT [OBOL:automatic] synonym: "tympanic cavity blood vessel" EXACT [] xref: MA:0001219 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001981 ! blood vessel is_a: UBERON:0003496 ! implied link automatically realized ! head blood vessel is_a: UBERON:0005911 ! implied link automatically realized ! endo-epithelium relationship: part_of UBERON:0004114 intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0004114 ! tympanic cavity relationship: part_of UBERON:0004114 ! tympanic cavity [Term] id: UBERON:0004116 name: nerve of tympanic cavity def: "A nerve that is part of a tympanic cavity [Obol]." [OBOL:automatic] synonym: "anatomical cavity of middle ear nerve" EXACT [OBOL:automatic] synonym: "cavity of middle ear nerve" EXACT [OBOL:automatic] synonym: "middle ear anatomical cavity nerve" EXACT [OBOL:automatic] synonym: "middle ear cavity nerve" EXACT [OBOL:automatic] synonym: "nerve blood vessel" EXACT [] synonym: "nerve of anatomical cavity of middle ear" EXACT [OBOL:automatic] synonym: "nerve of cavity of middle ear" EXACT [OBOL:automatic] synonym: "nerve of middle ear anatomical cavity" EXACT [OBOL:automatic] synonym: "nerve of middle ear cavity" EXACT [OBOL:automatic] synonym: "tympanic cavity nerve" EXACT [] synonym: "tympanic cavity nerves" EXACT [MA:0001222] xref: MA:0001222 is_a: UBERON:0001021 ! nerve is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: part_of UBERON:0004114 intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0004114 ! tympanic cavity relationship: part_of UBERON:0004114 ! tympanic cavity [Term] id: UBERON:0004117 name: pharyngeal pouch def: "embryonic structure that forms on the endodermal side between the branchial arches, and pharyngeal grooves (or clefts) form the lateral ectodermal surface of the neck region to separate the arches. The pouches line up with the clefts, and these thin segments become gills in fish[WP]. Outpocketings of pharyngeal endoderm that interdigitate with the neural crest derived pharyngeal arches. The pouches later fuse with the surface ectoderm to form the gill slits[ZFA]." [Wikipedia:Pharyngeal_pouch_(embryology)] comment: The pouches are polarized structures. For example, whereas the rostral half of each pouch expresses Bmp-7, the caudal half expresses FGF-8 and the dorsal aspect of each pouch is marked via its expression of Pax-1. each pouch has an individual sense of identity. Shh expression is a prominent early feature of the caudal endoderm of the second arch, and individual pouches mark the anterior limits of expression of Hox genes within the pharyngeal endoderm; Hox-a2 has a rostral boundary at the second pouch, Hox-a3 at the third pouch and Hox-a4 at the most caudal pouch[PMID:16313389] subset: vertebrate_core synonym: "branchial pouch" EXACT [Wikipedia:Branchial_pouch] synonym: "visceral pouch" EXACT SENSU [] xref: AAO:0011113 xref: EFO:0003627 xref: EHDAA:1086 xref: EHDAA:1669 xref: EHDAA:579 xref: EHDAA:617 xref: ncithesaurus:Pharyngeal_Pouch xref: OG:0001203 xref: SCTID:34674002 xref: XAO:0000282 xref: ZFA:0001106 is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue is_a: UBERON:0005423 ! developing anatomical structure is_a: UBERON:0005911 ! implied link automatically realized ! endo-epithelium relationship: adjacent_to UBERON:0002539 ! pharyngeal arch relationship: develops_from UBERON:0007690 {source="ZFA"} ! early pharyngeal endoderm relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0008814 ! pharyngeal system [Term] id: UBERON:0004118 name: vasculature of iris def: "A vasculature that is part of a iris [Obol]." [OBOL:automatic] synonym: "iris blood vessels" EXACT [OBOL:automatic] synonym: "iris vascular network" EXACT [OBOL:automatic] synonym: "iris vasculature" EXACT [] synonym: "vascular network of iris" EXACT [OBOL:automatic] xref: ZFA:0005568 is_a: UBERON:0002049 ! vasculature is_a: UBERON:0002203 ! implied link automatically realized ! vasculature of eye is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001769 intersection_of: UBERON:0002049 ! vasculature intersection_of: part_of UBERON:0001769 ! iris [Term] id: UBERON:0004119 name: endoderm-derived structure def: "An anatomical structure that develops (entirely or partially) from the endoderm." [UBERON:cjm] comment: Grouping term for query purposes subset: grouping_class is_a: UBERON:0000061 ! anatomical structure relationship: develops_from UBERON:0000925 intersection_of: UBERON:0000061 ! anatomical structure intersection_of: develops_from UBERON:0000925 ! endoderm [Term] id: UBERON:0004120 name: mesoderm-derived structure def: "An anatomical structure that develops (entirely or partially) from the mesoderm." [UBERON:cjm] comment: Grouping term for query purposes subset: grouping_class is_a: UBERON:0000061 ! anatomical structure relationship: develops_from UBERON:0000926 intersection_of: UBERON:0000061 ! anatomical structure intersection_of: develops_from UBERON:0000926 ! mesoderm [Term] id: UBERON:0004121 name: ectoderm-derived structure def: "An anatomical structure that develops (entirely or partially) from the ectoderm." [UBERON:cjm] comment: Grouping term for query purposes subset: grouping_class is_a: UBERON:0000061 ! anatomical structure relationship: develops_from UBERON:0000924 intersection_of: UBERON:0000061 ! anatomical structure intersection_of: develops_from UBERON:0000924 ! ectoderm [Term] id: UBERON:0004122 name: genitourinary system synonym: "genitourinary tract" RELATED [] synonym: "GU tract" RELATED [] synonym: "urogenital system" EXACT [] synonym: "urogenital tract" RELATED [BTO:0003091] synonym: "Urogenitalsystem" RELATED [BTO:0003091] xref: AAO:0000624 xref: BILA:0000122 xref: BTO:0003091 xref: EFO:0003864 xref: EHDAA:1013 xref: EMAPA:16367 xref: EV:0100094 xref: GAID:362 xref: galen:GenitoUrinarySystem xref: MESH:A.05 xref: ncithesaurus:Genitourinary_System xref: OG:0000286 xref: OpenCyc:Mx4rQRpVMgAKEdyHxgDggVfs8g xref: SCTID:278861008 xref: XAO:0000140 is_a: UBERON:0000467 ! anatomical system is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: has_part UBERON:0000990 relationship: has_part UBERON:0001008 intersection_of: UBERON:0000467 ! anatomical system intersection_of: has_part UBERON:0000990 ! reproductive system intersection_of: has_part UBERON:0001008 ! excretory system relationship: develops_from UBERON:0003064 {source="AAO"} ! intermediate mesoderm [Term] id: UBERON:0004123 name: myocardial layer synonym: "layer of myocardium" EXACT [] synonym: "myocardium layer" EXACT [] xref: MA:0000080 is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004923 ! implied link automatically realized ! organ component layer relationship: part_of UBERON:0002349 intersection_of: UBERON:0004923 ! organ component layer intersection_of: part_of UBERON:0002349 ! myocardium [Term] id: UBERON:0004124 name: myocardium trabecular layer def: "The layer of the myocardium composed of projections of contractile myocytes. The trabecular layer is bounded internally by the endocardium. In zebrafish, unlike the trabeculations of higher vertebrates, both atrial and ventricular trabeculae have more strut-like character, and are more uniform without apparent regional differences[ZFA]." [ZFA:0005059] subset: vertebrate_core synonym: "myocardial trabecular layer" EXACT [] synonym: "trabecular layer" EXACT [ZFA:0005059] xref: EFO:0003706 xref: MA:0002866 xref: ZFA:0005059 is_a: UBERON:0004123 ! myocardial layer [Term] id: UBERON:0004125 name: myocardial compact layer def: " outer dense layer of the myocardium uniting the epicardium and myocardium[MP]." [MP:0004056] synonym: "myocardium compact layer" EXACT [MA:0002865] xref: MA:0002865 is_a: UBERON:0004123 ! myocardial layer [Term] id: UBERON:0004126 name: trabecular layer of ventricle comment: todo - check FMA subset: vertebrate_core synonym: "myocardium of region of ventricle" EXACT [FMA:83511] synonym: "trabecular cardiac ventricle muscle" EXACT [GO:0003222] synonym: "ventricular trabecular myocardium" EXACT [GO:0003222] xref: FMA:83511 xref: ZFA:0005060 is_a: UBERON:0004124 ! implied link automatically realized ! myocardium trabecular layer relationship: part_of UBERON:0002082 intersection_of: UBERON:0004124 ! myocardium trabecular layer intersection_of: part_of UBERON:0002082 ! cardiac ventricle [Term] id: UBERON:0004127 name: compact layer of ventricle def: "The outer layer the ventricular myocardium, muscle fibers are arranged in a compact form and involved the entire ventricle." [ZFA:0005062] synonym: "compact cardiac ventricle muscle" EXACT [] synonym: "ventricle myocardium compact zone" EXACT [MP:0010556] synonym: "ventricular compact myocardium" EXACT [] synonym: "ventricular myocardial compact layer" EXACT [MP:0010556] synonym: "ventricular myocardial compact zone" EXACT [MP:0010556] xref: ZFA:0005062 is_a: UBERON:0004125 ! implied link automatically realized ! myocardial compact layer relationship: part_of UBERON:0002082 intersection_of: UBERON:0004125 ! myocardial compact layer intersection_of: part_of UBERON:0002082 ! cardiac ventricle relationship: part_of UBERON:0001083 {source="ZFA"} ! myocardium of ventricle [Term] id: UBERON:0004128 name: optic vesicle def: "The optic vesicle is the evagination of neurectoderm that precedes formation of the optic cup[GO]. Portion of tissue that is comprised of neuroepitheium which has pinched off from the anterior neural keel and will form the optic cup[ZFA]." [GO:0003404, Wikipedia:Optic_vesicles] comment: Genes: Six3, Pax6, Rx1 are expressed together in the tip of the neural plate [ISBN:9780878932504 "Developmental Biology"] subset: vertebrate_core synonym: "evagination" RELATED [] xref: AAO:0011039 xref: EHDAA2:0001320 xref: EMAPA:16540 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e0/Gray863.png/200px-Gray863.png xref: ncithesaurus:Optic_Vesicle xref: OG:0000165 xref: SCTID:362864008 xref: XAO:0000228 xref: ZFA:0000050 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: develops_from UBERON:0003071 ! eye primordium relationship: induced_by UBERON:0004880 ! chordamesoderm [Term] id: UBERON:0004129 name: growth plate cartilage def: "cartilage that will provide a scaffold for mineralization of endochondral bones as they elongate or grow." [GO:0003417] synonym: "growth plate" RELATED [] is_a: UBERON:0002418 ! cartilage tissue relationship: surrounds UBERON:0002513 ! endochondral bone [Term] id: UBERON:0004130 name: cerebellar layer synonym: "cell layer of cerebellar cortex" EXACT [] synonym: "gray matter layer of cerebellum" EXACT [FMA:83141] synonym: "layer of cerebellar cortex" EXACT [] xref: FMA:83141 xref: MA:0000201 xref: SCTID:360478008 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002749 ! implied link automatically realized ! regional part of cerebellar cortex relationship: part_of UBERON:0002129 ! cerebellar cortex [Term] id: UBERON:0004132 name: trigeminal sensory nucleus def: "The sensory trigeminal nerve nuclei are the largest of the cranial nerve nuclei, and extend through the whole of the midbrain, pons and medulla. The nucleus is divided into three parts, from rostral to caudal (top to bottom in humans): * The mesencephalic nucleus * The chief sensory nucleus (or pontine nucleus or main sensory nucleus or primary nucleus) * The spinal trigeminal nucleus[WP]." [Wikipedia:Trigeminal_nuclei] comment: TODO: check ZFA link. note this is part of medulla in ZFA, but we do not include this link here as it leads to inconsistencies subset: vertebrate_core synonym: "sensory trigeminal nucleus" EXACT [ZFA:0000433] synonym: "sensory trigeminal V nucleus" EXACT [] synonym: "trigeminal sensory nucleus" EXACT [GO:0021730] synonym: "trigeminal V sensory nucleus" EXACT [MA:0001030] xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray696.png/200px-Gray696.png xref: MA:0001030 xref: OG:0001356 xref: SCTID:280170001 xref: ZFA:0000433 is_a: UBERON:0000126 {source="FMA"} ! cranial nerve nucleus is_a: UBERON:0002925 ! implied link automatically realized ! trigeminal nucleus relationship: part_of UBERON:0002925 {source="MA"} ! trigeminal nucleus [Term] id: UBERON:0004133 name: salivatory nucleus def: "." [GO:0021751] synonym: "salivary nucleus" EXACT [GO:0021751] is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0006331 ! implied link automatically realized ! brainstem nucleus is_a: UBERON:0009662 ! implied link automatically realized ! hindbrain nucleus relationship: part_of UBERON:0000988 ! pons [Term] id: UBERON:0004134 name: proximal tubule def: "In mammals, the proximal tubule is a nephron tubule that connects Bowman's capsule to the loop of Henle. It has a brush border epithelial morphology[GO]." [GO:0072014] comment: todo - ensure definition works across species. synonym: "proximal kidney tubule" EXACT [MESH:A.05.810.453.736.560.570] synonym: "renal proximal tubule" EXACT [] xref: BTO:0001498 xref: EMAPA:28281 xref: MA:0002611 xref: MESH:A.05.810.453.736.560.570 is_a: UBERON:0006853 ! implied link automatically realized ! renal cortex tubule is_a: UBERON:0007685 ! region of nephron tubule relationship: continuous_with UBERON:0001230 {source="GO"} ! glomerular capsule relationship: continuous_with UBERON:0001289 {source="GO"} ! descending limb of loop of Henle relationship: part_of UBERON:0001225 {notes="checkme"} ! cortex of kidney relationship: part_of UBERON:0001231 {source="multiple"} ! nephron tubule [Term] id: UBERON:0004135 name: distal tubule def: "The distal tubule is a nephron tubule that consists of the convoluted and straight distal tubule segments" [GO:0072017] synonym: "renal distal tubule" EXACT [] xref: BTO:0000482 xref: EMAPA:28387 xref: MA:0002633 xref: MESH:A.05.810.453.736.560.540 is_a: UBERON:0007685 ! region of nephron tubule [Term] id: UBERON:0004136 name: intermediate tubule def: "The intermediate tubule is a nephron tubule that lies between the proximal and distal tubules" [GO:0072018] comment: todo - check for applicability across species synonym: "renal intermediate tubule" EXACT [] synonym: "tubulus attenuatus" EXACT [FMA:17718] xref: FMA:17718 is_a: UBERON:0007685 ! region of nephron tubule relationship: part_of UBERON:0001288 {source="FMA"} ! loop of Henle [Term] id: UBERON:0004138 name: somitomeric trunk muscle def: "The somitomeric trunk muscle is derived from somitomeric mesoderm. The muscle begins its development with the differentiation of the muscle cells and ends with the mature muscle. An example of this process is found in Mus musculus.[GO]." [GO:0002075] comment: TODO - find N+S conditions. SMT & develops_from somite is not specific enough (all SMT develops_from somite) is_a: UBERON:0001134 ! skeletal muscle tissue relationship: develops_from UBERON:0002329 ! somite [Term] id: UBERON:0004139 name: cardiogenic plate def: "The first recognizable structure derived from the heart field" [GO:0003142] comment: TODO - check plate vs rudiment vs primordium vs endocardial tube. See XAO synonym: "cardiogenic crescent" RELATED [GO:0003142] synonym: "heart rudiment" RELATED [] synonym: "myocardial plate" EXACT [EHDAA2:0000215] xref: EHDAA2:0000215 xref: EMAPA:16106 xref: OG:0000975 is_a: UBERON:0005423 ! developing anatomical structure relationship: develops_from UBERON:0003084 ! heart primordium relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0004140 name: heart field def: "a specific region of the lateral mesoderm in which the heart will develop." [GO:0003128] comment: note that this term denotes the primary heart field; GO:0003128 denotes the superclass of primary and secondary: specific region of the lateral mesoderm into the area which will form the primary beating heart tube[GO:0003138] synonym: "primary heart field" EXACT [PMID:17276708, XAO:0004185] xref: XAO:0004185 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue relationship: part_of UBERON:0003081 {source="GO:0003128"} ! lateral plate mesoderm [Term] id: UBERON:0004141 name: heart tube def: "Cavitated compound organ that will become the adult heart following looping morphogenesis and valve formation[ZFA]." [GO:0003143, ZFA:0000360] subset: vertebrate_core synonym: "early primitive heart tube" EXACT [EMAPA:16208] synonym: "embryonic heart tube" RELATED [] xref: EFO:0003526 xref: EHDAA:424 xref: EMAPA:16208 xref: ZFA:0000360 is_a: UBERON:0003914 ! epithelial tube is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: develops_from UBERON:0005498 {source="ZFA"} ! primitive heart tube [Term] id: UBERON:0004142 name: outflow tract septum def: "The outflow tract septum is a partition in the outflow tract" [GO:0003148] is_a: UBERON:0002099 ! implied link automatically realized ! cardiac septum relationship: part_of UBERON:0004145 intersection_of: UBERON:0002099 ! cardiac septum intersection_of: part_of UBERON:0004145 ! outflow tract [Term] id: UBERON:0004143 name: membranous septum def: "The membranous septum is the upper part of ventricular septum." [GO:0003149] is_a: UBERON:0002099 ! implied link automatically realized ! cardiac septum is_a: UBERON:0003037 ! septum relationship: part_of UBERON:0002094 ! interventricular septum [Term] id: UBERON:0004144 name: muscular septum def: "The muscular septum is the lower part of the ventricular septum" [GO:0003150] is_a: UBERON:0002099 ! implied link automatically realized ! cardiac septum is_a: UBERON:0003037 ! septum relationship: part_of UBERON:0002094 ! interventricular septum [Term] id: UBERON:0004145 name: outflow tract def: "The outflow tract is the portion of the heart through which blood flows into the arteries" [GO:0003151] synonym: "cardiac outflow tract" EXACT [] xref: EHDAA:464 xref: EHDAA:798 xref: EHDAA2:0001351 xref: EMAPA:16229 xref: EMAPA:16346 xref: MA:0000100 xref: OG:0000670 xref: XAO:0004139 is_a: UBERON:0004111 ! anatomical conduit is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0000948 ! heart [Term] id: UBERON:0004146 name: His-Purkinje system def: "The His-Purkinje system receives signals from the AV node and is composed of the fibers that regulate cardiac muscle contraction in the ventricles" [GO:0003164] synonym: "distal conduction system" EXACT [ZFA:0005071] synonym: "His-Purkinji network" EXACT [ZFA:0005071] synonym: "HPS" EXACT [ZFA:0005071] xref: ZFA:0005071 is_a: UBERON:0002350 ! conducting system of heart [Term] id: UBERON:0004147 name: cardiac Purkinje fiber def: "The cardiac Purkinje fiber is part of the cardiac conduction system that receives signals from the bundle of His and innervates the ventricular cardiac muscle" [GO:0003165] synonym: "heart Purkinje fiber" RELATED [BTO:0001735] xref: BTO:0001735 xref: MESH:A.07.541.409.683 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0004146 ! His-Purkinje system [Term] id: UBERON:0004148 name: coronary vein def: "Vein of heart" [GOC:Obol] synonym: "cardiac vein" EXACT [FMA:12846] synonym: "heart vein" EXACT [OBOL:automatic] synonym: "vein of heart" EXACT [OBOL:automatic] xref: EHDAA2:0004507 xref: FMA:12846 xref: galen:CoronaryVein xref: ncithesaurus:Coronary_Vein xref: SCTID:277726009 is_a: UBERON:0001638 ! vein is_a: UBERON:0003498 ! implied link automatically realized ! heart blood vessel relationship: part_of UBERON:0000948 intersection_of: UBERON:0001638 ! vein intersection_of: part_of UBERON:0000948 ! heart relationship: part_of UBERON:0000948 ! heart [Term] id: UBERON:0004149 name: ventriculo bulbo valve def: "A heart valve located between the ventricle and bulbus arteriosus." [GO:0003173] synonym: "bulboventricular valve" EXACT [ZFA:0001375] xref: ZFA:0001375 is_a: UBERON:0000946 ! cardial valve relationship: develops_from UBERON:0002062 {source="ZFA"} ! endocardial cushion [Term] id: UBERON:0004150 name: coronary sinus valve def: "Vestigial cardiac valve which is continuous with the valve of the inferior vena cava[FMA]." [GO:0003178] comment: todo - development synonym: "thebesian valve" EXACT [] synonym: "thebesius valve" EXACT [] synonym: "valve of coronary sinus" EXACT [] xref: FMA:9242 xref: SCTID:277723001 is_a: UBERON:0000946 ! cardial valve [Term] id: UBERON:0004151 name: cardiac chamber def: "A cardiac chamber surrounds an enclosed cavity within the heart" [GO:0003205] comment: generic enough to cover FBbt:00003156 heart chamber but this is a cavity. GO defines it as the cavity. TODO - move subclasses. Note this also includes sinus venosus synonym: "chamber of heart" EXACT [] synonym: "heart chamber" EXACT [] xref: FMA:7095 xref: OpenCyc:Mx4rmexpjPdAEduAAAAOpmP6tw xref: SCTID:276456008 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0000948 ! heart [Term] id: UBERON:0004152 name: bulbus arteriosus def: "The bulbus arteriosus is an elastic heart chamber[GO]. Multi-tissue structure that consists of three layers and through which the blood exits the heart. The bulbus arteriosus is a pear shaped chamber that functions as a capacitor, maintaining continuous blood flow into the gill arches[ZFA]." [GO:0003232, PMID:15108157] synonym: "truncus" EXACT [ZFA:0000173] xref: EFO:0003505 xref: ZFA:0000173 is_a: UBERON:0004151 ! cardiac chamber [Term] id: UBERON:0004153 name: ventricular septum intermedium def: "." [GO:0003282] is_a: UBERON:0002094 ! interventricular septum [Term] id: UBERON:0004154 name: septum primum def: "." [GO:0003284] xref: EHDAA:1900 xref: EHDAA2:0001825 xref: EMAPA:17013 xref: FMA:63909 xref: ncithesaurus:Septum_Primum xref: OG:0000020 xref: SCTID:362017007 is_a: UBERON:0002085 ! interatrial septum [Term] id: UBERON:0004155 name: septum secundum def: "." [GO:0003285] xref: EHDAA:3406 xref: EHDAA2:0001827 xref: EMAPA:17864 xref: FMA:63910 xref: ncithesaurus:Septum_Secundum xref: OG:0000021 xref: SCTID:308850005 is_a: UBERON:0002085 ! interatrial septum [Term] id: UBERON:0004157 name: atrial septum primum def: "." [GO:0003289] is_a: UBERON:0002085 ! interatrial septum [Term] id: UBERON:0004158 name: atrial septum secundum def: "." [GO:0003290] is_a: UBERON:0002085 ! interatrial septum [Term] id: UBERON:0004159 name: atrial septum intermedium def: "." [GO:0003291] is_a: UBERON:0002085 ! interatrial septum [Term] id: UBERON:0004160 name: proepicardium def: "An outpouching of the septum transversum[GO]. An embryonic group of progenitor cells that forms near the venous pole of the heart and gives rise to the epicardium[Wiktionary]" [GO:0003342, http://en.wiktionary.org/wiki/proepicardium] is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0005256 ! implied link automatically realized ! trunk mesenchyme relationship: part_of UBERON:0004161 ! septum transversum [Term] id: UBERON:0004161 name: septum transversum def: "A thick plate of mesodermal tissue that occupies the space between the thoracic cavity and yolk stalk in the early embryo, forming a transverse partition partially separating the coelomic cavity into thoracic and abdominal portions. It gives rise to the central tendon of the diaphragm[OG]. The septum transversum is a portion of the trunk mesenchyme[GO]." [GO:0003343, OG:0000019, Wikipedia:Septum_transversum] synonym: "transverse septum" EXACT [UBERON:cjm] xref: EHDAA:736 xref: EHDAA2:0001829 xref: EMAPA:16318 xref: ncithesaurus:Septum_Transversum xref: OG:0000019 xref: SCTID:308819008 is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0005256 ! implied link automatically realized ! trunk mesenchyme relationship: part_of UBERON:0002100 ! trunk [Term] id: UBERON:0004162 name: pulmonary myocardium def: "The pulmonary myocardium is the myocardial tissue present in the pulmonary vein" [GO:0003350] is_a: UBERON:0002036 ! striated muscle tissue relationship: part_of UBERON:0002016 ! pulmonary vein relationship: part_of UBERON:0002349 ! myocardium [Term] id: UBERON:0004163 name: anterior ectodermal midgut def: "portions of the midgut that are derived from ectoderm." [GO:0007441] is_a: UBERON:0000479 ! tissue is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: develops_from UBERON:0000924 ! ectoderm relationship: part_of UBERON:0001555 ! digestive tract [Term] id: UBERON:0004164 name: branchiomeric skeletal muscle def: "The branchiomeric muscle is derived from cranial mesoderm and controls facial expression, pharyngeal and laryngeal function, operating the jaw. Branchiomeric muscles of mammals correspond to the gill musculature of fish[GO]." [GO:0014707] comment: TODO - gill musculature is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001134 ! skeletal muscle tissue relationship: develops_from UBERON:0002539 {source="PMID:21610022"} ! pharyngeal arch relationship: develops_from UBERON:0005280 {source="GO"} ! head mesoderm [Term] id: UBERON:0004166 name: superior reticular formation def: "." [GO:0021729, GO_REF:0000021] comment: check ZFA structures superior reticular formation medial column & tegmentum is_a: UBERON:0002275 ! reticular formation is_a: UBERON:0002559 ! implied link automatically realized ! medullary reticular formation relationship: part_of UBERON:0002559 {source="GO"} ! medullary reticular formation [Term] id: UBERON:0004167 name: orbitofrontal cortex def: "The orbitofrontal cortex is a cerebral cortex region located in the frontal lobe" [GO:0021769] comment: note that this is a gyrus in FMA synonym: "fronto-orbital cortex" EXACT [] synonym: "orbital frontal cortex" EXACT [DHB:OFC, NIF_GrossAnatomy:birnlex_1049] synonym: "orbito-frontal cortex" EXACT [] xref: EFO:0001990 xref: FMA:242003 xref: NIF_GrossAnatomy:birnlex_1049 is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0000349 ! limbic system relationship: part_of UBERON:0001870 {source="GO"} ! frontal cortex [Term] id: UBERON:0004170 name: spinal cord ventral commissure def: "the band of nerve fibers which cross the midline of the spinal cord ventral to the central canal and posterior grey commissure[MP]. The anterior (or ventral) white commissure, also known as the alba anterior medullae spinalis, is a bundle of nerve fibers which cross the midline of the spinal cord just anterior to the gray commissure. A N4 fibers and C fibers carrying pain sensation in the spinothalamic tract contribute to this commissure, as do fibers of the anterior corticospinal tract, which carry motor signals from the primary motor cortex[WP]." [GO:0021965, MP:0009695, Wikipedia:Anterior_white_commissure] synonym: "anterior commissure" RELATED INCONSISTENT [MP:0009695] synonym: "anterior white commissure" EXACT [MP:0009695] synonym: "anterior white commissure of spinal cord" EXACT [FMA:77035] synonym: "spinal cord anterior commissure" EXACT [MP:0009695] synonym: "ventral spinal commissure" EXACT [MP:0009695] synonym: "ventral white column" EXACT [MP:0009695] synonym: "ventral white commissure of spinal cord" EXACT [FMA:77035] synonym: "white commissure" RELATED [MP:0009695] xref: FMA:77035 xref: ncithesaurus:White_Commissure xref: SCTID:424149007 is_a: UBERON:0007838 {source="FMA"} ! spinal cord white commissure [Term] id: UBERON:0004171 name: trigeminothalamic tract def: "the trigeminothalamic tract is one of the major routes of nociceptive and temperature signaling from the face" [GO:0021974] xref: FMA:83852 is_a: UBERON:0001018 ! axon tract [Term] id: UBERON:0004172 name: pons reticulospinal tract def: "axon tract that carries efferent (outgoing) action potentials from the cell body in the pons towards target cells in the spinal cord." [GO:0021975] xref: SCTID:362404001 is_a: UBERON:0001018 ! axon tract [Term] id: UBERON:0004173 name: medulla reticulospinal tract def: "axon tract that carries efferent (outgoing) action potentials from the cell body in the medulla towards target cells in the spinal cord.." [GO:0021976] is_a: UBERON:0001018 ! axon tract [Term] id: UBERON:0004174 name: leg joint def: "Joint in the leg. For example the knee, which separates the leg tibia and femur" [GO:0035111] synonym: "joint of leg" EXACT [OBOL:automatic] is_a: UBERON:0003840 ! implied link automatically realized ! hindlimb joint relationship: part_of UBERON:0000978 intersection_of: UBERON:0000982 ! skeletal joint intersection_of: part_of UBERON:0000978 ! leg [Term] id: UBERON:0004175 name: internal reproductive organ def: "The internal genitalia are the internal sex organs such as the uterine tube, the uterus and the vagina in female mammals, and the testis, seminal vesicle, ejaculatory duct and prostate in male mammals" [GO:0035260] subset: organ_slim synonym: "internal genitalia" EXACT [] synonym: "internal reproductive organ" EXACT [] synonym: "internal sex organ" EXACT [] xref: FMA:45652 is_a: UBERON:0003133 ! reproductive organ [Term] id: UBERON:0004176 name: external reproductive organ def: "The external genitalia are the outer sex organs, such as the penis or vulva in mammals" [GO:0035261] subset: organ_slim synonym: "external genitalia" EXACT [] synonym: "external reproductive organ" EXACT [] synonym: "external sex organ" EXACT [] xref: FMA:45643 xref: SCTID:362207005 is_a: UBERON:0003133 ! reproductive organ [Term] id: UBERON:0004177 name: hemopoietic organ def: "Organ that is part of the hematopoietic system." [GOC:Obol] comment: note that the FMA class 'lymphoid organ' is a general anatomical term subset: organ_slim synonym: "haematological system organ" EXACT [OBOL:automatic] synonym: "haemopoietic system organ" EXACT [OBOL:automatic] synonym: "hematopoeitic or lymphoid organ" NARROW [] synonym: "hematopoietic system organ" EXACT [OBOL:automatic] synonym: "lymphoid organ" NARROW [BTO:0004605, FMA:7143] synonym: "organ of haematological system" EXACT [OBOL:automatic] synonym: "organ of haemopoietic system" EXACT [OBOL:automatic] synonym: "organ of hematopoietic system" EXACT [OBOL:automatic] synonym: "organ of organa haemopoietica" EXACT [OBOL:automatic] synonym: "organa haemopoietica organ" EXACT [OBOL:automatic] xref: BTO:0004605 xref: FMA:7143 is_a: UBERON:0000062 ! implied link automatically realized ! organ relationship: part_of UBERON:0002390 intersection_of: UBERON:0000062 ! organ intersection_of: part_of UBERON:0002390 ! hematopoietic system [Term] id: UBERON:0004178 name: aorta smooth muscle tissue def: "A portion of smooth muscle tissue that is part of an aorta [Obol]." [OBOL:automatic] synonym: "adult aorta involuntary muscle" EXACT [OBOL:automatic] synonym: "adult aorta non-striated muscle" EXACT [OBOL:automatic] synonym: "adult aorta smooth muscle" EXACT [OBOL:automatic] synonym: "adult aorta smooth muscle tissue" EXACT [OBOL:automatic] synonym: "aorta involuntary muscle" EXACT [OBOL:automatic] synonym: "aorta non-striated muscle" EXACT [OBOL:automatic] synonym: "aorta smooth muscle" EXACT [OBOL:automatic] synonym: "aortic smooth muscle" EXACT [BTO:0001685] synonym: "dorsal aorta involuntary muscle" EXACT [OBOL:automatic] synonym: "dorsal aorta non-striated muscle" EXACT [OBOL:automatic] synonym: "dorsal aorta smooth muscle" EXACT [OBOL:automatic] synonym: "dorsal aorta smooth muscle tissue" EXACT [OBOL:automatic] synonym: "involuntary muscle of adult aorta" EXACT [OBOL:automatic] synonym: "involuntary muscle of aorta" EXACT [OBOL:automatic] synonym: "involuntary muscle of dorsal aorta" EXACT [OBOL:automatic] synonym: "involuntary muscle of trunk of aortic tree" EXACT [OBOL:automatic] synonym: "non-striated muscle of adult aorta" EXACT [OBOL:automatic] synonym: "non-striated muscle of aorta" EXACT [OBOL:automatic] synonym: "non-striated muscle of dorsal aorta" EXACT [OBOL:automatic] synonym: "non-striated muscle of trunk of aortic tree" EXACT [OBOL:automatic] synonym: "smooth muscle of adult aorta" EXACT [OBOL:automatic] synonym: "smooth muscle of aorta" EXACT [OBOL:automatic] synonym: "smooth muscle of dorsal aorta" EXACT [OBOL:automatic] synonym: "smooth muscle of trunk of aortic tree" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of adult aorta" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of aorta" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of dorsal aorta" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of trunk of aortic tree" EXACT [OBOL:automatic] synonym: "trunk of aortic tree involuntary muscle" EXACT [OBOL:automatic] synonym: "trunk of aortic tree non-striated muscle" EXACT [OBOL:automatic] synonym: "trunk of aortic tree smooth muscle" EXACT [OBOL:automatic] synonym: "trunk of aortic tree smooth muscle tissue" EXACT [OBOL:automatic] xref: BTO:0001685 xref: EFO:0002775 xref: MA:0000702 xref: ncithesaurus:Aorta_Smooth_Muscle_Tissue is_a: UBERON:0002111 ! implied link automatically realized ! smooth muscle of artery relationship: part_of UBERON:0000947 intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0000947 ! aorta [Term] id: UBERON:0004179 name: prostate glandular acinus def: "A saclike structure of the prostate gland, comprised of at least three cell layers: an innermost layer of secretory columnar luminal epithelium, a middle layer of squamous basal epithelium that also contains neuroendocrine cells, transit amplifying cells, and stem cells, and an outer layer of smooth muscle intermixed with other stromal cells" [GO:0060525, PMID:18977204] comment: Concurrent with branching morphogenesis, the solid cords of epithelium formed by budding arborize and differentiate postnatally into glandular acin. The basic prostate architecture is established by puberty and acquires secretory function thereafter[PMID:18977204] synonym: "prostatic acinus" EXACT [FMA:66808] synonym: "prostatic follicle" EXACT [FMA:66808] xref: FMA:66808 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure is_a: UBERON:0009842 {source="FMA"} ! acinus relationship: develops_from UBERON:0009843 {source="PMID:18977204"} ! prostate epithelial cord relationship: part_of UBERON:0000428 {source="GO"} ! prostate epithelium relationship: part_of UBERON:0002367 ! prostate gland [Term] id: UBERON:0004180 name: mammary gland fat def: "The mammary fat is an adipose structure in the gland that is invaded by the mammary ducts" [GO:0060611] synonym: "adipose tissue of lactiferous gland" EXACT [OBOL:automatic] synonym: "adipose tissue of lobe of breast" EXACT [OBOL:automatic] synonym: "adipose tissue of lobe of mammary gland" EXACT [OBOL:automatic] synonym: "adipose tissue of mammary gland" EXACT [OBOL:automatic] synonym: "fat tissue of lactiferous gland" EXACT [OBOL:automatic] synonym: "fat tissue of lobe of breast" EXACT [OBOL:automatic] synonym: "fat tissue of lobe of mammary gland" EXACT [OBOL:automatic] synonym: "fat tissue of mammary gland" EXACT [OBOL:automatic] synonym: "fatty tissue of lactiferous gland" EXACT [OBOL:automatic] synonym: "fatty tissue of lobe of breast" EXACT [OBOL:automatic] synonym: "fatty tissue of lobe of mammary gland" EXACT [OBOL:automatic] synonym: "fatty tissue of mammary gland" EXACT [OBOL:automatic] synonym: "lactiferous gland adipose tissue" EXACT [OBOL:automatic] synonym: "lactiferous gland fat tissue" EXACT [OBOL:automatic] synonym: "lactiferous gland fatty tissue" EXACT [OBOL:automatic] synonym: "lobe of breast adipose tissue" EXACT [OBOL:automatic] synonym: "lobe of breast fat tissue" EXACT [OBOL:automatic] synonym: "lobe of breast fatty tissue" EXACT [OBOL:automatic] synonym: "lobe of mammary gland adipose tissue" EXACT [OBOL:automatic] synonym: "lobe of mammary gland fat tissue" EXACT [OBOL:automatic] synonym: "lobe of mammary gland fatty tissue" EXACT [OBOL:automatic] synonym: "mammary gland adipose tissue" EXACT [OBOL:automatic] synonym: "mammary gland fat tissue" EXACT [OBOL:automatic] synonym: "mammary gland fatty tissue" EXACT [OBOL:automatic] xref: MA:0002911 is_a: UBERON:0001013 ! implied link automatically realized ! adipose tissue is_a: UBERON:0003584 ! implied link automatically realized ! mammary gland connective tissue relationship: part_of UBERON:0001911 intersection_of: UBERON:0001013 ! adipose tissue intersection_of: part_of UBERON:0001911 ! mammary gland [Term] id: UBERON:0004182 name: mammary gland cord def: "Mammary gland cords form when the mammary gland bud invades the mammary fat" [GO:0060652] comment: TODO - mammary placode is_a: UBERON:0003244 ! implied link automatically realized ! epithelium of mammary gland is_a: UBERON:0005154 ! implied link automatically realized ! epithelial cord relationship: part_of UBERON:0001765 intersection_of: UBERON:0005154 ! epithelial cord intersection_of: part_of UBERON:0001765 ! mammary duct [Term] id: UBERON:0004183 name: labyrinthine layer blood vessel def: "The embryonic vessels grow through the layer to come in close contact with the maternal blood supply" [GO:0060716] synonym: "blood vessel of labyrinthine layer" EXACT [OBOL:automatic] synonym: "blood vessel of labyrinthine layer of placenta" EXACT [OBOL:automatic] synonym: "blood vessel of placenta labyrinth" EXACT [OBOL:automatic] synonym: "labyrinthine layer of placenta blood vessel" EXACT [OBOL:automatic] synonym: "placenta labyrinth blood vessel" EXACT [OBOL:automatic] is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001981 ! implied link automatically realized ! blood vessel is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure is_a: UBERON:0005911 ! implied link automatically realized ! endo-epithelium relationship: part_of UBERON:0003946 intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0003946 ! placenta labyrinth [Term] id: UBERON:0004184 name: prostate gland stroma alt_id: UBERON:0005084 def: "The prostate gland stroma is made up of the mesenchymal or fibroblast cells of the prostate gland" [GO:0060741] comment: TODO - check also FMA Stroma of glandular part of prostate synonym: "prostate stroma" EXACT [OBOL:automatic] synonym: "prostatic stroma" EXACT [FMA:45719] synonym: "stroma of glandular part of prostate" NARROW [FMA:74349, OBOL:automatic] synonym: "stroma of prostate" EXACT [OBOL:automatic] synonym: "stroma of prostate gland" EXACT [OBOL:automatic] xref: FMA:45719 xref: MA:0002912 xref: ncithesaurus:Prostatic_Stroma is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003891 ! implied link automatically realized ! stroma is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0002367 intersection_of: UBERON:0003891 ! stroma intersection_of: part_of UBERON:0002367 ! prostate gland [Term] id: UBERON:0004185 name: endodermal gut def: "A portions of the gut that is derived from endoderm." [GO:0061031] is_a: UBERON:0000481 ! implied link automatically realized ! multi-tissue structure is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: develops_from UBERON:0000925 relationship: part_of UBERON:0001555 intersection_of: UBERON:0000481 ! multi-tissue structure intersection_of: develops_from UBERON:0000925 ! endoderm intersection_of: part_of UBERON:0001555 ! digestive tract [Term] id: UBERON:0004186 name: olfactory bulb mitral cell layer def: "The mitral cell layer is composed of pyramidal neurons whose cell bodies are located between the granule cell layer and the plexiform layer" [GO:0061034] comment: note that NIF divides this into main and accessory synonym: "mitral cell body layer" EXACT [NIF_GrossAnatomy:nlx_anat_100201] synonym: "mitral cell layer" EXACT [BTO:0001108] synonym: "olfactory bulb main mitral cell body layer" RELATED [NIF_GrossAnatomy:nlx_anat_100201] xref: BTO:0001108 xref: MA:0000973 xref: NIF_GrossAnatomy:nlx_anat_100201 is_a: UBERON:0004001 ! olfactory bulb layer relationship: part_of UBERON:0002264 ! olfactory bulb [Term] id: UBERON:0004187 name: Harderian gland def: "The Harderian gland is an anterior orbital structure usually associated with the nictitating membrane, and produces and secretes a variety of substances to the eye, depending upon the species[GO]. An accessory lacrimal gland on the inner side of the orbit in reptiles and birds but usually degenerate in mammals[BTO]." [GO:0070384] subset: organ_slim xref: BTO:0000557 xref: EMAPA:19153 xref: GAID:1219 xref: MA:0001247 xref: MESH:A.13.445 xref: ncithesaurus:Harderian_Gland xref: SCTID:41474005 is_a: UBERON:0001821 ! sebaceous gland is_a: UBERON:0003484 ! implied link automatically realized ! eye sebaceous gland relationship: part_of UBERON:0000019 ! camera-type eye [Term] id: UBERON:0004188 name: glomerular epithelium def: "The glomerular epithelium is an epithelial tissue that covers the outer surfaces of the glomerulus. The glomerular epithelium consists of both parietal and visceral epithelium. Metanephric glomerular parietal epithelial cells are specialized epithelial cells that form tight junctions as a barrier to protein transport. A metanephric glomerular visceral epithelial cell is a specialized epithelial cell that contains 'feet' that interdigitate with the 'feet' of other glomerular epithelial cells in the metanephros." [GO:0072010] comment: TODO - check - GO says outer, BTO says inner. Make this a superclass synonym: "epithelium of glomerulus" EXACT [] synonym: "epithelium of kidney glomerulus" EXACT [] synonym: "epithelium of renal glomerulus" EXACT [] synonym: "glomerular epithelial cell" RELATED [BTO:0001515] synonym: "kidney glomerular epithelium" EXACT [MA:0002847] xref: BTO:0001515 xref: MA:0002847 is_a: UBERON:0004211 ! implied link automatically realized ! nephron epithelium relationship: part_of UBERON:0000074 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000074 ! renal glomerulus [Term] id: UBERON:0004189 name: glomerular endothelium def: "The glomerular endothelium is an epithelial tissue that covers the internal surfaces of the glomerulus" [GO:0072011] synonym: "endothelium of renal glomerulus" EXACT [OBOL:automatic] synonym: "renal glomerulus endothelium" EXACT [OBOL:automatic] xref: BTO:0004631 is_a: UBERON:0004188 ! glomerular epithelium is_a: UBERON:0004852 ! implied link automatically realized ! cardiovascular system endothelium relationship: part_of UBERON:0000074 intersection_of: UBERON:0001986 ! endothelium intersection_of: part_of UBERON:0000074 ! renal glomerulus relationship: part_of UBERON:0004190 ! glomerulus vasculature [Term] id: UBERON:0004190 name: glomerulus vasculature def: "The glomerulus vasculature is composed of the tubule structures that carry blood or lymph in the glomerulus" [GO:0072012] synonym: "renal glomerulus vascular network" EXACT [OBOL:automatic] synonym: "renal glomerulus vasculature" EXACT [OBOL:automatic] synonym: "vascular network of renal glomerulus" EXACT [OBOL:automatic] synonym: "vasculature of renal glomerulus" EXACT [OBOL:automatic] is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0006544 ! implied link automatically realized ! kidney vasculature relationship: part_of UBERON:0000074 intersection_of: UBERON:0002049 ! vasculature intersection_of: part_of UBERON:0000074 ! renal glomerulus [Term] id: UBERON:0004193 name: loop of Henle ascending limb thin segment def: "A sub-portion of the loop of Henle in the nephron of the kidney that is permeable to ions but not to water" [GO:0072021, Wikipedia:Thin_ascending_limb_of_loop_of_Henle] comment: check relationship to distal tubule synonym: "ascending limb thin segment of loop of Henle" EXACT [] synonym: "ascending thin limb" EXACT [FMA:17720] synonym: "pars ascendens (tubulus attenuatus)" EXACT [FMA:17720] synonym: "thin ascending limb" EXACT [EMAPA:28328] synonym: "thin ascending limb of loop of Henle" EXACT [] xref: EMAPA:28328 xref: EMAPA:28361 xref: FMA:17720 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/27/Gray1128.png/200px-Gray1128.png xref: MA:0001678 is_a: UBERON:0007685 ! region of nephron tubule is_a: UBERON:0008408 ! implied link automatically realized ! distal tubular epithelium relationship: part_of UBERON:0003455 ! inner renal medulla loop of henle relationship: part_of UBERON:0005164 ! ascending limb of loop of Henle [Term] id: UBERON:0004194 name: long nephron def: "Long nephrons are associated with juxtamedullary glomeruli and extend to the inner medulla" [GO:0072029] synonym: "juxtamedullary nephron" RELATED [GO:0072029, http://sourceforge.net/tracker/?func=detail&aid=3031362&group_id=36855&atid=440764] xref: ncithesaurus:Juxtamedullary_Nephron is_a: UBERON:0001285 ! nephron [Term] id: UBERON:0004195 name: short nephron def: "Short nephrons are associated with mid-cortical glomeruli, and have no short ascending limb, so the limb is situated in the outer medulla" [GO:0072030] is_a: UBERON:0001285 ! nephron [Term] id: UBERON:0004196 name: proximal convoluted tubule segment 1 alt_id: UBERON:0006432 def: "The S1 portion is the initial portion of the proximal convoluted tubule and is responsible for avid reabsorption of water and solutes[GO]." [GO:0072031, http://sourceforge.net/tracker/?func=detail&atid=440764&aid=3298740&group_id=36855] synonym: "S1" BROAD [GO:0072031] synonym: "S1 portion of renal tubule" EXACT [] synonym: "S1 portion of tubule" EXACT [] synonym: "segment 1 of proximal tubule" EXACT [EMAPA:29657] xref: EMAPA:29657 xref: MA:0002612 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001287 {source="GO"} ! proximal convoluted tubule [Term] id: UBERON:0004197 name: proximal convoluted tubule segment 2 alt_id: UBERON:0006433 def: "The S2 portion of the tubule is involved in reabsorption of water and sodium chloride[GO]." [GO:0072032] synonym: "S2" BROAD [GO:0072032] synonym: "S2 portion of renal tubule" EXACT [] synonym: "S2 portion of tubule" EXACT [] synonym: "segment 2 of proximal tubule" EXACT [EMAPA:29659] xref: EMAPA:29659 xref: MA:0002613 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001287 {source="GO"} ! proximal convoluted tubule [Term] id: UBERON:0004198 name: comma-shaped body def: "The comma-shaped body is the precursor structure to the S-shaped body that contributes to the morphogenesis of the nephron" [GO:0072049] xref: EMAPA:27681 xref: EMAPA:27835 xref: ZFA:0005588 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: develops_from UBERON:0004209 {source="ZFA"} ! renal vesicle relationship: part_of UBERON:0001285 ! nephron [Term] id: UBERON:0004199 name: S-shaped body def: "The S-shaped body is the successor of the comma-shaped body that contributes to the morphogenesis of the nephron" [GO:0072050] comment: TODO synonym: "stage II nephron" EXACT [http://www.gudmap.org/Organ_Summaries/Metanephros/Renal_vesicle.html] xref: EMAPA:27756 xref: EMAPA:27853 xref: ZFA:0005589 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: develops_from UBERON:0004198 {source="GO"} ! comma-shaped body relationship: part_of UBERON:0001285 ! nephron [Term] id: UBERON:0004200 name: kidney pyramid alt_id: UBERON:0002449 alt_id: UBERON:0005098 alt_id: UBERON:MA_0001654-FMA_258870 def: "Kidney pyramids are the conical masses that constitute the renal medulla in a multi-lobed mammalian kidney; they contain the loops of Henle and the medullary collecting ducts[GO]. One of a number of pyramidal masses seen on longitudinal section of the kidney; collectively, they constitute the renal medulla, and contain part of the secreting tubules and the collecting tubules[BTO]. Renal pyramids (or malpighian pyramids) are cone-shaped tissues of the kidney. The renal medulla is made up of 8 to 18 of these conical subdivisions. The broad base of each pyramid faces the renal cortex, and its apex, or papilla, points internally. The pyramids appear striped because they are formed by straight parallel segments of nephrons. [WP,unvetted]." [BTO:0003926, GO:0072056, Wikipedia:Renal_pyramids] comment: not the same as FMA:50609 Pyramid (which is a volume / dimensional entity) synonym: "malphigian pyramid" RELATED [BTO:0003926] synonym: "malpighian pyramid" EXACT [Wikipedia:Renal_pyramids] synonym: "medullary pyramid" RELATED [] synonym: "pyramid" BROAD [GO:0072056] synonym: "pyramis renalis" RELATED [BTO:0003926] synonym: "renal pyramid" EXACT [Wikipedia:Renal_pyramids] xref: BTO:0003926 xref: FMA:258870 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Kidney_PioM.png/200px-Kidney_PioM.png xref: MA:0001654 xref: ncithesaurus:Renal_Pyramid xref: SCTID:361328001 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0000362 ! renal medulla [Term] id: UBERON:0004201 name: kidney outer medulla inner stripe def: "The inner stripe is a deep, centrally located portion of the renal outer medulla and is traversed by thick and thin portions of nephron tubules" [GO:0072057] synonym: "inner stripe" EXACT [GO:0072057] synonym: "inner stripe of medulla of kidney" EXACT [FMA:76663] synonym: "inner stripe of outer medulla" EXACT [EMAPA:29675] synonym: "inner stripe of renal medulla" EXACT [FMA:76663] synonym: "outer medulla inner stripe" EXACT [MA:0002626] synonym: "stria interna medullae renalis" EXACT [FMA:76663, FMA:TA] xref: EMAPA:29675 xref: FMA:76663 xref: MA:0002626 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0001293 ! outer medulla of kidney [Term] id: UBERON:0004202 name: kidney outer medulla outer stripe def: "The outer stripe is the region of the kidney that lies distal to the line of termination of the straight renal tubules" [GO:0072058] synonym: "outer medulla outer stripe" EXACT [MA:0002629] synonym: "outer stripe" EXACT [GO:0072058] synonym: "outer stripe of medulla of kidney" EXACT [FMA:76662] synonym: "outer stripe of outer medulla" EXACT [EMAPA:29663] synonym: "outer stripe of renal medulla" EXACT [FMA:76662] synonym: "stria externa medullae renalis" EXACT [FMA:76662, FMA:TA] xref: EMAPA:29663 xref: FMA:76662 xref: MA:0002629 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0001293 ! outer medulla of kidney [Term] id: UBERON:0004203 name: cortical collecting duct def: "The cortical collecting duct is the portion of the collecting duct that resides in the renal cortex" [GO:0072059] xref: BTO:0002643 xref: EMAPA:28130 is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0006553 ! implied link automatically realized ! renal duct relationship: part_of UBERON:0001225 relationship: part_of UBERON:0001232 intersection_of: UBERON:0000058 ! duct intersection_of: part_of UBERON:0001225 ! cortex of kidney intersection_of: part_of UBERON:0001232 ! collecting duct of renal tubule [Term] id: UBERON:0004204 name: outer medullary collecting duct def: "The outer medullary collecting duct is the portion of the collecting duct that lies in the renal outer medulla" [GO:0072060] xref: EMAPA:28346 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0001232 ! collecting duct of renal tubule [Term] id: UBERON:0004205 name: inner medullary collecting duct def: "The inner medullary collecting duct is the portion of the collecting duct that lies in the renal inner medulla" [GO:0072061] xref: BTO:0004544 xref: EMAPA:28370 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0001232 ! collecting duct of renal tubule [Term] id: UBERON:0004206 name: long descending thin limb bend def: "The long descending thin limb bend is a part of the descending thin limb of a long nephron that lies beyond the prebend segment" [GO:0072065] is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0001289 ! descending limb of loop of Henle [Term] id: UBERON:0004207 name: prebend segment def: "The prebend segment is a part of the descending thin limb that lies before the bend and exhibits robust sodium chloride reabsorption" [GO:0072066] is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0001289 ! descending limb of loop of Henle relationship: part_of UBERON:0005096 {source="GO"} ! descending thin limb [Term] id: UBERON:0004208 name: nephrogenic mesenchyme def: "Nephrogenic mesenchyme is the tissue made up of loosely connected mesenchymal cells in the nephron" [GO:0072076] comment: The detailed events associated with the differentiation of the nephrogenic mesenchyme are somewhat complex. It has been suggested that each terminal branch of the ureteric bud stimulates the associated cap mesenchyme tissue to form a renal vesicle (the most primitive stage of nephron development: a stage I nephron). This then elongates, becomes a comma-shaped and then an S-shaped body (stage II nephron), and makes contact with and fuses with the distal component of the ureteric bud. The latter then forms the collecting duct. One fold of the S-shaped body gives rise to Bowman’s capsule (also termed the glomerular capsule). Soon afterwards, endothelial cells invade to make a capillary knot-like outgrowth, the glomerular tuft, which goes on to form the glomerulus. The inner epithelial layer of the Bowman’s capsule (also called the visceral epithelium, or podocyte layer because it consists of podocytes) is closely apposed to the endothelial glomerulus. Together, the Bowman’s capsule and the glomerulus comprise the definitive renal corpuscle. The rest of the nephron elongates to form components of the proximal tubule, the loop of Henle and the distal tubule. The distal pole of the developing nephron connects to the ureteric bud that induced it at an early stage of nephron/ collecting duct development, before differentiation of the proximal tubule, the loop of Henle and the distal tubule are complete. This connection allows the excretory products produced by the kidney to be removed and subsequently transferred, via the ureter, into the bladder where they are stored until it is appropriate to empty the bladder. [http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron] synonym: "mesenchyme of nephron" EXACT [OBOL:automatic] synonym: "nephron mesenchyme" EXACT [OBOL:automatic] is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme relationship: develops_into UBERON:0001285 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: develops_into UBERON:0001285 ! nephron [Term] id: UBERON:0004209 name: renal vesicle def: "The renal vesicle is the primordial structure of the nephron epithelium, and is formed by the condensation of mesenchymal cells" [GO:0072077] comment: TODO - make a more specific develops_from relationship - see UBERON:0005107 synonym: "stage I nephron" EXACT [http://www.gudmap.org/Organ_Summaries/Metanephros/Renal_vesicle.html, ZFA:0005586] xref: EMAPA:27678 xref: EMAPA:27829 xref: ZFA:0005586 is_a: UBERON:0000483 {source="GO"} ! epithelium is_a: UBERON:0004211 ! implied link automatically realized ! nephron epithelium relationship: develops_from UBERON:0004208 ! nephrogenic mesenchyme relationship: induced_by UBERON:0000084 ! ureteric bud relationship: part_of UBERON:0001285 ! nephron [Term] id: UBERON:0004211 name: nephron epithelium def: "The nephron epithelium is a tissue that covers the surface of a nephron" [GO:0072088] synonym: "epithelial tissue of nephron" EXACT [OBOL:automatic] synonym: "epithelium of nephron" EXACT [OBOL:automatic] synonym: "nephron epithelial tissue" EXACT [OBOL:automatic] is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004819 ! implied link automatically realized ! kidney epithelium relationship: part_of UBERON:0001285 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001285 ! nephron [Term] id: UBERON:0004212 name: glomerular capillary def: "A capillary that is part of a renal glomerulus [Obol]." [OBOL:automatic] subset: vertebrate_core synonym: "blood capillary of renal glomerulus" EXACT [OBOL:automatic] synonym: "capillary of renal glomerulus" EXACT [OBOL:automatic] synonym: "capillary vessel of renal glomerulus" EXACT [OBOL:automatic] synonym: "glomerular capillary system" RELATED [MA:0002587] synonym: "renal glomerulus blood capillary" EXACT [OBOL:automatic] synonym: "renal glomerulus capillary" EXACT [OBOL:automatic] synonym: "renal glomerulus capillary vessel" EXACT [OBOL:automatic] xref: EMAPA:28245 xref: MA:0002587 xref: ncithesaurus:Glomerular_Capillary xref: ZFA:0005284 is_a: UBERON:0001231 ! implied link automatically realized ! nephron tubule is_a: UBERON:0003527 ! implied link automatically realized ! kidney capillary is_a: UBERON:0004188 ! implied link automatically realized ! glomerular epithelium relationship: part_of UBERON:0000074 intersection_of: UBERON:0001982 ! capillary intersection_of: part_of UBERON:0000074 ! renal glomerulus [Term] id: UBERON:0004214 name: upper leg nerve def: "A nerve that is part of a hindlimb stylopod [Obol]." [OBOL:automatic] synonym: "hind limb stylopod nerve" EXACT [OBOL:automatic] synonym: "hindlimb stylopod nerve" EXACT [OBOL:automatic] synonym: "inferior member stylopod nerve" EXACT [OBOL:automatic] synonym: "lower extremity stylopod nerve" EXACT [OBOL:automatic] synonym: "nerve of hind limb stylopod" EXACT [OBOL:automatic] synonym: "nerve of hindlimb stylopod" EXACT [OBOL:automatic] synonym: "nerve of inferior member stylopod" EXACT [OBOL:automatic] synonym: "nerve of lower extremity stylopod" EXACT [OBOL:automatic] synonym: "nerve of Proximal segment of free lower limb" EXACT [OBOL:automatic] synonym: "nerve of stylopod of hind limb" EXACT [OBOL:automatic] synonym: "nerve of stylopod of hindlimb" EXACT [OBOL:automatic] synonym: "nerve of stylopod of inferior member" EXACT [OBOL:automatic] synonym: "nerve of stylopod of lower extremity" EXACT [OBOL:automatic] synonym: "nerve of stylopod of lower limb" EXACT [OBOL:automatic] synonym: "nerve of thigh" EXACT [OBOL:automatic] synonym: "nerve of upper leg" EXACT [OBOL:automatic] synonym: "Proximal segment of free lower limb nerve" EXACT [OBOL:automatic] synonym: "stylopod of hind limb nerve" EXACT [OBOL:automatic] synonym: "stylopod of hindlimb nerve" EXACT [OBOL:automatic] synonym: "stylopod of inferior member nerve" EXACT [OBOL:automatic] synonym: "stylopod of lower extremity nerve" EXACT [OBOL:automatic] synonym: "stylopod of lower limb nerve" EXACT [OBOL:automatic] synonym: "thigh nerve" EXACT [OBOL:automatic] xref: MA:0000685 is_a: UBERON:0003431 ! implied link automatically realized ! leg nerve relationship: part_of UBERON:0000376 intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0000376 ! hindlimb stylopod [Term] id: UBERON:0004215 name: back nerve def: "A nerve that is part of a back [Obol]." [OBOL:automatic] synonym: "nerve of back" EXACT [OBOL:automatic] xref: MA:0000497 is_a: UBERON:0003439 ! implied link automatically realized ! trunk nerve relationship: part_of UBERON:0001137 intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0001137 ! back [Term] id: UBERON:0004216 name: lower arm nerve def: "A nerve that is part of a lower arm [Obol]." [OBOL:automatic] synonym: "antebrachial region nerve" EXACT [OBOL:automatic] synonym: "arm middle limb segment nerve" EXACT [OBOL:automatic] synonym: "arm zeugopod nerve" EXACT [OBOL:automatic] synonym: "brachial region middle limb segment nerve" EXACT [OBOL:automatic] synonym: "brachial region zeugopod nerve" EXACT [OBOL:automatic] synonym: "intermediate segment of free upper limb nerve" EXACT [OBOL:automatic] synonym: "lower segment of arm nerve" EXACT [OBOL:automatic] synonym: "middle limb segment of arm nerve" EXACT [OBOL:automatic] synonym: "middle limb segment of brachial region nerve" EXACT [OBOL:automatic] synonym: "middle limb segment of proximal segment of free upper limb nerve" EXACT [OBOL:automatic] synonym: "nerve of antebrachial region" EXACT [OBOL:automatic] synonym: "nerve of arm middle limb segment" EXACT [OBOL:automatic] synonym: "nerve of arm zeugopod" EXACT [OBOL:automatic] synonym: "nerve of brachial region middle limb segment" EXACT [OBOL:automatic] synonym: "nerve of brachial region zeugopod" EXACT [OBOL:automatic] synonym: "nerve of intermediate segment of free upper limb" EXACT [OBOL:automatic] synonym: "nerve of lower arm" EXACT [OBOL:automatic] synonym: "nerve of lower segment of arm" EXACT [OBOL:automatic] synonym: "nerve of middle limb segment of arm" EXACT [OBOL:automatic] synonym: "nerve of middle limb segment of brachial region" EXACT [OBOL:automatic] synonym: "nerve of middle limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "nerve of proximal segment of free upper limb middle limb segment" EXACT [OBOL:automatic] synonym: "nerve of proximal segment of free upper limb zeugopod" EXACT [OBOL:automatic] synonym: "nerve of zeugopod of arm" EXACT [OBOL:automatic] synonym: "nerve of zeugopod of brachial region" EXACT [OBOL:automatic] synonym: "nerve of zeugopod of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb middle limb segment nerve" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb zeugopod nerve" EXACT [OBOL:automatic] synonym: "zeugopod of arm nerve" EXACT [OBOL:automatic] synonym: "zeugopod of brachial region nerve" EXACT [OBOL:automatic] synonym: "zeugopod of proximal segment of free upper limb nerve" EXACT [OBOL:automatic] xref: MA:0000601 is_a: UBERON:0003433 ! implied link automatically realized ! arm nerve relationship: part_of UBERON:0002386 intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0002386 ! forelimb zeugopod [Term] id: UBERON:0004217 name: upper arm nerve def: "A nerve that is part of a forelimb stylopod [Obol]." [OBOL:automatic] synonym: "arm stylopod nerve" EXACT [OBOL:automatic] synonym: "brachial region stylopod nerve" EXACT [OBOL:automatic] synonym: "nerve of arm stylopod" EXACT [OBOL:automatic] synonym: "nerve of brachial region stylopod" EXACT [OBOL:automatic] synonym: "nerve of Proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "nerve of proximal segment of free upper limb stylopod" EXACT [OBOL:automatic] synonym: "nerve of stylopod of arm" EXACT [OBOL:automatic] synonym: "nerve of stylopod of brachial region" EXACT [OBOL:automatic] synonym: "nerve of stylopod of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "nerve of upper arm" EXACT [OBOL:automatic] synonym: "Proximal segment of free upper limb nerve" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb stylopod nerve" EXACT [OBOL:automatic] synonym: "stylopod of arm nerve" EXACT [OBOL:automatic] synonym: "stylopod of brachial region nerve" EXACT [OBOL:automatic] synonym: "stylopod of proximal segment of free upper limb nerve" EXACT [OBOL:automatic] xref: MA:0000607 is_a: UBERON:0003433 ! implied link automatically realized ! arm nerve relationship: part_of UBERON:0003822 intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0003822 ! forelimb stylopod [Term] id: UBERON:0004218 name: lower leg nerve def: "A nerve that is part of a lower leg [Obol]." [OBOL:automatic] synonym: "hind limb middle limb segment nerve" EXACT [OBOL:automatic] synonym: "hind limb zeugopod nerve" EXACT [OBOL:automatic] synonym: "hindlimb middle limb segment nerve" EXACT [OBOL:automatic] synonym: "hindlimb zeugopod nerve" EXACT [OBOL:automatic] synonym: "inferior member middle limb segment nerve" EXACT [OBOL:automatic] synonym: "inferior member zeugopod nerve" EXACT [OBOL:automatic] synonym: "intermediate segment of free lower limb nerve" EXACT [OBOL:automatic] synonym: "lower extremity middle limb segment nerve" EXACT [OBOL:automatic] synonym: "lower extremity zeugopod nerve" EXACT [OBOL:automatic] synonym: "middle limb segment of hind limb nerve" EXACT [OBOL:automatic] synonym: "middle limb segment of hindlimb nerve" EXACT [OBOL:automatic] synonym: "middle limb segment of inferior member nerve" EXACT [OBOL:automatic] synonym: "middle limb segment of lower extremity nerve" EXACT [OBOL:automatic] synonym: "nerve of hind limb middle limb segment" EXACT [OBOL:automatic] synonym: "nerve of hind limb zeugopod" EXACT [OBOL:automatic] synonym: "nerve of hindlimb middle limb segment" EXACT [OBOL:automatic] synonym: "nerve of hindlimb zeugopod" EXACT [OBOL:automatic] synonym: "nerve of inferior member middle limb segment" EXACT [OBOL:automatic] synonym: "nerve of inferior member zeugopod" EXACT [OBOL:automatic] synonym: "nerve of intermediate segment of free lower limb" EXACT [OBOL:automatic] synonym: "nerve of lower extremity middle limb segment" EXACT [OBOL:automatic] synonym: "nerve of lower extremity zeugopod" EXACT [OBOL:automatic] synonym: "nerve of lower leg" EXACT [OBOL:automatic] synonym: "nerve of middle limb segment of hind limb" EXACT [OBOL:automatic] synonym: "nerve of middle limb segment of hindlimb" EXACT [OBOL:automatic] synonym: "nerve of middle limb segment of inferior member" EXACT [OBOL:automatic] synonym: "nerve of middle limb segment of lower extremity" EXACT [OBOL:automatic] synonym: "nerve of zeugopod of hind limb" EXACT [OBOL:automatic] synonym: "nerve of zeugopod of hindlimb" EXACT [OBOL:automatic] synonym: "nerve of zeugopod of inferior member" EXACT [OBOL:automatic] synonym: "nerve of zeugopod of leg" EXACT [OBOL:automatic] synonym: "nerve of zeugopod of lower extremity" EXACT [OBOL:automatic] synonym: "zeugopod of hind limb nerve" EXACT [OBOL:automatic] synonym: "zeugopod of hindlimb nerve" EXACT [OBOL:automatic] synonym: "zeugopod of inferior member nerve" EXACT [OBOL:automatic] synonym: "zeugopod of leg nerve" EXACT [OBOL:automatic] synonym: "zeugopod of lower extremity nerve" EXACT [OBOL:automatic] xref: MA:0000679 is_a: UBERON:0003442 ! implied link automatically realized ! hindlimb nerve relationship: part_of UBERON:0003823 intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0003823 ! hindlimb zeugopod [Term] id: UBERON:0004219 name: urethra smooth muscle def: "A portion of smooth muscle tissue that is part of a urethra [Obol]." [OBOL:automatic] synonym: "involuntary muscle of urethra" EXACT [OBOL:automatic] synonym: "non-striated muscle of urethra" EXACT [OBOL:automatic] synonym: "smooth muscle of urethra" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of urethra" EXACT [OBOL:automatic] synonym: "urethra involuntary muscle" EXACT [OBOL:automatic] synonym: "urethra non-striated muscle" EXACT [OBOL:automatic] synonym: "urethra smooth muscle tissue" EXACT [OBOL:automatic] synonym: "urethral smooth muscle" RELATED [MA:0001691] xref: MA:0001691 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001135 ! implied link automatically realized ! smooth muscle tissue is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0000057 intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0000057 ! urethra [Term] id: UBERON:0004220 name: large intestine smooth muscle def: "A portion of smooth muscle tissue that is part of a large intestine [Obol]." [OBOL:automatic] synonym: "involuntary muscle of large intestine" EXACT [OBOL:automatic] synonym: "large intestine involuntary muscle" EXACT [OBOL:automatic] synonym: "large intestine non-striated muscle" EXACT [OBOL:automatic] synonym: "large intestine smooth muscle tissue" EXACT [OBOL:automatic] synonym: "non-striated muscle of large intestine" EXACT [OBOL:automatic] synonym: "smooth muscle of large intestine" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of large intestine" EXACT [OBOL:automatic] xref: MA:0001547 is_a: UBERON:0004221 ! implied link automatically realized ! intestine smooth muscle relationship: part_of UBERON:0000059 intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0000059 ! large intestine relationship: part_of UBERON:0001169 ! wall of large intestine [Term] id: UBERON:0004221 name: intestine smooth muscle def: "A portion of smooth muscle tissue that is part of a intestine [Obol]." [OBOL:automatic] synonym: "bowel involuntary muscle" EXACT [OBOL:automatic] synonym: "bowel non-striated muscle" EXACT [OBOL:automatic] synonym: "bowel smooth muscle" EXACT [OBOL:automatic] synonym: "bowel smooth muscle tissue" EXACT [OBOL:automatic] synonym: "intestine involuntary muscle" EXACT [OBOL:automatic] synonym: "intestine non-striated muscle" EXACT [OBOL:automatic] synonym: "intestine smooth muscle tissue" EXACT [OBOL:automatic] synonym: "involuntary muscle of bowel" EXACT [OBOL:automatic] synonym: "involuntary muscle of intestine" EXACT [OBOL:automatic] synonym: "non-striated muscle of bowel" EXACT [OBOL:automatic] synonym: "non-striated muscle of intestine" EXACT [OBOL:automatic] synonym: "smooth muscle of bowel" EXACT [OBOL:automatic] synonym: "smooth muscle of intestine" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of bowel" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of intestine" EXACT [OBOL:automatic] xref: BTO:0000643 xref: MA:0001539 xref: ncithesaurus:Intestinal_Smooth_Muscle_Tissue xref: WBbt:0005796 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004226 ! implied link automatically realized ! gastrointestinal system smooth muscle relationship: part_of UBERON:0000160 intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0000160 ! intestine relationship: part_of UBERON:0001262 ! wall of intestine [Term] id: UBERON:0004222 name: stomach smooth muscle def: "A portion of smooth muscle tissue that is part of a stomach [Obol]." [OBOL:automatic] synonym: "gastric muscle" RELATED [BTO:0001818] synonym: "gastric smooth muscle" RELATED [MA:0001627] synonym: "involuntary muscle of stomach" EXACT [OBOL:automatic] synonym: "involuntary muscle of ventriculus" EXACT [OBOL:automatic] synonym: "non-striated muscle of stomach" EXACT [OBOL:automatic] synonym: "non-striated muscle of ventriculus" EXACT [OBOL:automatic] synonym: "smooth muscle of stomach" EXACT [OBOL:automatic] synonym: "smooth muscle of ventriculus" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of stomach" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of ventriculus" EXACT [OBOL:automatic] synonym: "stomach involuntary muscle" EXACT [OBOL:automatic] synonym: "stomach muscle" RELATED [BTO:0001818] synonym: "stomach non-striated muscle" EXACT [OBOL:automatic] synonym: "stomach smooth muscle tissue" EXACT [OBOL:automatic] synonym: "ventriculus involuntary muscle" EXACT [OBOL:automatic] synonym: "ventriculus non-striated muscle" EXACT [OBOL:automatic] synonym: "ventriculus smooth muscle" EXACT [OBOL:automatic] synonym: "ventriculus smooth muscle tissue" EXACT [OBOL:automatic] xref: BTO:0001818 xref: MA:0001627 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004226 ! implied link automatically realized ! gastrointestinal system smooth muscle relationship: part_of UBERON:0000945 intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0000945 ! stomach relationship: part_of UBERON:0001167 ! wall of stomach [Term] id: UBERON:0004223 name: vagina smooth muscle def: "A portion of smooth muscle tissue that is part of a vagina [Obol]." [OBOL:automatic] synonym: "involuntary muscle of vagina" EXACT [OBOL:automatic] synonym: "non-striated muscle of vagina" EXACT [OBOL:automatic] synonym: "smooth muscle of vagina" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of vagina" EXACT [OBOL:automatic] synonym: "vagina involuntary muscle" EXACT [OBOL:automatic] synonym: "vagina non-striated muscle" EXACT [OBOL:automatic] synonym: "vagina smooth muscle" RELATED [BTO:0004999] synonym: "vagina smooth muscle tissue" EXACT [OBOL:automatic] xref: BTO:0004999 xref: MA:0001733 is_a: UBERON:0001135 ! implied link automatically realized ! smooth muscle tissue is_a: UBERON:0006652 ! implied link automatically realized ! muscular layer of vagina relationship: part_of UBERON:0000996 intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0000996 ! vagina [Term] id: UBERON:0004224 name: vas deferens smooth muscle def: "A portion of smooth muscle tissue that is part of a vas deferens [Obol]." [OBOL:automatic] comment: todo - check MA and FMA classes mean the same thing synonym: "muscle layer of deferent duct" EXACT [FMA:19239] synonym: "muscle layer of ductus deferens" EXACT [FMA:19239] synonym: "muscle layer of vas deferens" EXACT [FMA:19239] synonym: "muscular coat of ductus deferens" EXACT [FMA:19239] synonym: "muscular layer of ductus deferens" EXACT [FMA:19239] synonym: "muscularis of vas deferens" EXACT [FMA:19239] synonym: "tunica muscularis (Ductus deferens)" EXACT [FMA:19239] synonym: "tunica muscularis ductus deferentis" EXACT [FMA:19239, FMA:TA] xref: EMAPA:29270 xref: FMA:19239 xref: MA:0001750 xref: SCTID:299705008 is_a: UBERON:0001135 ! smooth muscle tissue is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure is_a: UBERON:0006660 ! implied link automatically realized ! muscle layer relationship: part_of UBERON:0001000 intersection_of: UBERON:0006660 ! muscle layer intersection_of: part_of UBERON:0001000 ! vas deferens [Term] id: UBERON:0004225 name: respiratory system smooth muscle def: "A portion of smooth muscle tissue that is part of a respiratory system [Obol]." [OBOL:automatic] synonym: "apparatus respiratorius involuntary muscle" EXACT [OBOL:automatic] synonym: "apparatus respiratorius non-striated muscle" EXACT [OBOL:automatic] synonym: "apparatus respiratorius smooth muscle" EXACT [OBOL:automatic] synonym: "apparatus respiratorius smooth muscle tissue" EXACT [OBOL:automatic] synonym: "involuntary muscle of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "involuntary muscle of respiratory system" EXACT [OBOL:automatic] synonym: "non-striated muscle of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "non-striated muscle of respiratory system" EXACT [OBOL:automatic] synonym: "respiratory system involuntary muscle" EXACT [OBOL:automatic] synonym: "respiratory system non-striated muscle" EXACT [OBOL:automatic] synonym: "respiratory system smooth muscle tissue" EXACT [OBOL:automatic] synonym: "smooth muscle of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "smooth muscle of respiratory system" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of respiratory system" EXACT [OBOL:automatic] xref: MA:0001830 is_a: UBERON:0001135 ! implied link automatically realized ! smooth muscle tissue relationship: part_of UBERON:0001004 intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0004226 name: gastrointestinal system smooth muscle def: "A portion of smooth muscle tissue that is part of a digestive system [Obol]." [OBOL:automatic] synonym: "digestive system involuntary muscle" EXACT [OBOL:automatic] synonym: "digestive system non-striated muscle" EXACT [OBOL:automatic] synonym: "digestive system smooth muscle" EXACT [OBOL:automatic] synonym: "digestive system smooth muscle tissue" EXACT [OBOL:automatic] synonym: "gastrointestinal system involuntary muscle" EXACT [OBOL:automatic] synonym: "gastrointestinal system non-striated muscle" EXACT [OBOL:automatic] synonym: "gastrointestinal system smooth muscle tissue" EXACT [OBOL:automatic] synonym: "involuntary muscle of digestive system" EXACT [OBOL:automatic] synonym: "involuntary muscle of gastrointestinal system" EXACT [OBOL:automatic] synonym: "non-striated muscle of digestive system" EXACT [OBOL:automatic] synonym: "non-striated muscle of gastrointestinal system" EXACT [OBOL:automatic] synonym: "smooth muscle of digestive system" EXACT [OBOL:automatic] synonym: "smooth muscle of gastrointestinal system" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of digestive system" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of gastrointestinal system" EXACT [OBOL:automatic] xref: MA:0001523 is_a: UBERON:0001135 ! implied link automatically realized ! smooth muscle tissue relationship: part_of UBERON:0005409 intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0005409 ! gastrointestinal system [Term] id: UBERON:0004227 name: kidney pelvis smooth muscle def: "A portion of smooth muscle tissue that is part of a renal pelvis [Obol]." [OBOL:automatic] synonym: "involuntary muscle of kidney pelvis" EXACT [OBOL:automatic] synonym: "involuntary muscle of pelvis of ureter" EXACT [OBOL:automatic] synonym: "involuntary muscle of renal pelvis" EXACT [OBOL:automatic] synonym: "kidney pelvis involuntary muscle" EXACT [OBOL:automatic] synonym: "kidney pelvis non-striated muscle" EXACT [OBOL:automatic] synonym: "kidney pelvis smooth muscle tissue" EXACT [OBOL:automatic] synonym: "non-striated muscle of kidney pelvis" EXACT [OBOL:automatic] synonym: "non-striated muscle of pelvis of ureter" EXACT [OBOL:automatic] synonym: "non-striated muscle of renal pelvis" EXACT [OBOL:automatic] synonym: "pelvis of ureter involuntary muscle" EXACT [OBOL:automatic] synonym: "pelvis of ureter non-striated muscle" EXACT [OBOL:automatic] synonym: "pelvis of ureter smooth muscle" EXACT [OBOL:automatic] synonym: "pelvis of ureter smooth muscle tissue" EXACT [OBOL:automatic] synonym: "renal pelvis involuntary muscle" EXACT [OBOL:automatic] synonym: "renal pelvis non-striated muscle" EXACT [OBOL:automatic] synonym: "renal pelvis smooth muscle" EXACT [OBOL:automatic] synonym: "renal pelvis smooth muscle tissue" EXACT [OBOL:automatic] synonym: "smooth muscle of kidney pelvis" EXACT [OBOL:automatic] synonym: "smooth muscle of pelvis of ureter" EXACT [OBOL:automatic] synonym: "smooth muscle of renal pelvis" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of kidney pelvis" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of pelvis of ureter" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of renal pelvis" EXACT [OBOL:automatic] xref: FMA:262022 xref: MA:0002631 is_a: UBERON:0005321 ! implied link automatically realized ! mesonephric smooth muscle tissue is_a: UBERON:0009919 ! implied link automatically realized ! ureter smooth muscle relationship: part_of UBERON:0001224 intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0001224 ! renal pelvis [Term] id: UBERON:0004228 name: urinary bladder smooth muscle def: "A portion of smooth muscle tissue that is part of a urinary bladder [Obol]." [OBOL:automatic] synonym: "bladder involuntary muscle" EXACT [OBOL:automatic] synonym: "bladder non-striated muscle" EXACT [OBOL:automatic] synonym: "bladder smooth muscle" EXACT [OBOL:automatic] synonym: "bladder smooth muscle tissue" EXACT [OBOL:automatic] synonym: "involuntary muscle of bladder" EXACT [OBOL:automatic] synonym: "involuntary muscle of urinary bladder" EXACT [OBOL:automatic] synonym: "non-striated muscle of bladder" EXACT [OBOL:automatic] synonym: "non-striated muscle of urinary bladder" EXACT [OBOL:automatic] synonym: "smooth muscle of bladder" EXACT [OBOL:automatic] synonym: "smooth muscle of urinary bladder" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of bladder" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of urinary bladder" EXACT [OBOL:automatic] synonym: "urinary bladder involuntary muscle" EXACT [OBOL:automatic] synonym: "urinary bladder non-striated muscle" EXACT [OBOL:automatic] synonym: "urinary bladder smooth muscle tissue" EXACT [OBOL:automatic] xref: BTO:0001849 xref: MA:0001697 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001135 ! implied link automatically realized ! smooth muscle tissue is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0001255 intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0001255 ! urinary bladder [Term] id: UBERON:0004229 name: urinary bladder trigone smooth muscle def: "A portion of smooth muscle tissue that is part of a trigone of urinary bladder [Obol]." [OBOL:automatic] synonym: "deep trigone involuntary muscle" EXACT [OBOL:automatic] synonym: "deep trigone non-striated muscle" EXACT [OBOL:automatic] synonym: "deep trigone smooth muscle" EXACT [OBOL:automatic] synonym: "deep trigone smooth muscle tissue" EXACT [OBOL:automatic] synonym: "involuntary muscle of deep trigone" EXACT [OBOL:automatic] synonym: "involuntary muscle of Lieutaud's trigone" EXACT [OBOL:automatic] synonym: "involuntary muscle of trigone of bladder" EXACT [OBOL:automatic] synonym: "involuntary muscle of trigone of urinary bladder" EXACT [OBOL:automatic] synonym: "involuntary muscle of urinary bladder trigone" EXACT [OBOL:automatic] synonym: "involuntary muscle of vesical trigone" EXACT [OBOL:automatic] synonym: "Lieutaud's trigone involuntary muscle" EXACT [OBOL:automatic] synonym: "Lieutaud's trigone non-striated muscle" EXACT [OBOL:automatic] synonym: "Lieutaud's trigone smooth muscle" EXACT [OBOL:automatic] synonym: "Lieutaud's trigone smooth muscle tissue" EXACT [OBOL:automatic] synonym: "non-striated muscle of deep trigone" EXACT [OBOL:automatic] synonym: "non-striated muscle of Lieutaud's trigone" EXACT [OBOL:automatic] synonym: "non-striated muscle of trigone of bladder" EXACT [OBOL:automatic] synonym: "non-striated muscle of trigone of urinary bladder" EXACT [OBOL:automatic] synonym: "non-striated muscle of urinary bladder trigone" EXACT [OBOL:automatic] synonym: "non-striated muscle of vesical trigone" EXACT [OBOL:automatic] synonym: "smooth muscle of deep trigone" EXACT [OBOL:automatic] synonym: "smooth muscle of Lieutaud's trigone" EXACT [OBOL:automatic] synonym: "smooth muscle of trigone of bladder" EXACT [OBOL:automatic] synonym: "smooth muscle of trigone of urinary bladder" EXACT [OBOL:automatic] synonym: "smooth muscle of urinary bladder trigone" EXACT [OBOL:automatic] synonym: "smooth muscle of vesical trigone" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of deep trigone" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of Lieutaud's trigone" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of trigone of bladder" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of trigone of urinary bladder" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of urinary bladder trigone" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of vesical trigone" EXACT [OBOL:automatic] synonym: "trigone of bladder involuntary muscle" EXACT [OBOL:automatic] synonym: "trigone of bladder non-striated muscle" EXACT [OBOL:automatic] synonym: "trigone of bladder smooth muscle" EXACT [OBOL:automatic] synonym: "trigone of bladder smooth muscle tissue" EXACT [OBOL:automatic] synonym: "trigone of urinary bladder involuntary muscle" EXACT [OBOL:automatic] synonym: "trigone of urinary bladder non-striated muscle" EXACT [OBOL:automatic] synonym: "trigone of urinary bladder smooth muscle" EXACT [OBOL:automatic] synonym: "trigone of urinary bladder smooth muscle tissue" EXACT [OBOL:automatic] synonym: "urinary bladder trigone involuntary muscle" EXACT [OBOL:automatic] synonym: "urinary bladder trigone non-striated muscle" EXACT [OBOL:automatic] synonym: "urinary bladder trigone smooth muscle tissue" EXACT [OBOL:automatic] synonym: "vesical trigone involuntary muscle" EXACT [OBOL:automatic] synonym: "vesical trigone non-striated muscle" EXACT [OBOL:automatic] synonym: "vesical trigone smooth muscle" EXACT [OBOL:automatic] synonym: "vesical trigone smooth muscle tissue" EXACT [OBOL:automatic] xref: MA:0001700 is_a: UBERON:0004228 ! implied link automatically realized ! urinary bladder smooth muscle relationship: part_of UBERON:0001257 intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0001257 ! trigone of urinary bladder [Term] id: UBERON:0004230 name: urinary bladder neck smooth muscle def: "A portion of smooth muscle tissue that is part of a neck of urinary bladder [Obol]." [OBOL:automatic] synonym: "bladder neck involuntary muscle" EXACT [OBOL:automatic] synonym: "bladder neck non-striated muscle" EXACT [OBOL:automatic] synonym: "bladder neck smooth muscle" EXACT [OBOL:automatic] synonym: "bladder neck smooth muscle tissue" EXACT [OBOL:automatic] synonym: "involuntary muscle of bladder neck" EXACT [OBOL:automatic] synonym: "involuntary muscle of neck of bladder" EXACT [OBOL:automatic] synonym: "involuntary muscle of neck of urinary bladder" EXACT [OBOL:automatic] synonym: "involuntary muscle of urinary bladder neck" EXACT [OBOL:automatic] synonym: "involuntary muscle of vesical neck" EXACT [OBOL:automatic] synonym: "neck of bladder involuntary muscle" EXACT [OBOL:automatic] synonym: "neck of bladder non-striated muscle" EXACT [OBOL:automatic] synonym: "neck of bladder smooth muscle" EXACT [OBOL:automatic] synonym: "neck of bladder smooth muscle tissue" EXACT [OBOL:automatic] synonym: "neck of urinary bladder involuntary muscle" EXACT [OBOL:automatic] synonym: "neck of urinary bladder non-striated muscle" EXACT [OBOL:automatic] synonym: "neck of urinary bladder smooth muscle" EXACT [OBOL:automatic] synonym: "neck of urinary bladder smooth muscle tissue" EXACT [OBOL:automatic] synonym: "non-striated muscle of bladder neck" EXACT [OBOL:automatic] synonym: "non-striated muscle of neck of bladder" EXACT [OBOL:automatic] synonym: "non-striated muscle of neck of urinary bladder" EXACT [OBOL:automatic] synonym: "non-striated muscle of urinary bladder neck" EXACT [OBOL:automatic] synonym: "non-striated muscle of vesical neck" EXACT [OBOL:automatic] synonym: "smooth muscle of bladder neck" EXACT [OBOL:automatic] synonym: "smooth muscle of neck of bladder" EXACT [OBOL:automatic] synonym: "smooth muscle of neck of urinary bladder" EXACT [OBOL:automatic] synonym: "smooth muscle of urinary bladder neck" EXACT [OBOL:automatic] synonym: "smooth muscle of vesical neck" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of bladder neck" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of neck of bladder" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of neck of urinary bladder" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of urinary bladder neck" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of vesical neck" EXACT [OBOL:automatic] synonym: "urinary bladder neck involuntary muscle" EXACT [OBOL:automatic] synonym: "urinary bladder neck non-striated muscle" EXACT [OBOL:automatic] synonym: "urinary bladder neck smooth muscle tissue" EXACT [OBOL:automatic] synonym: "vesical neck involuntary muscle" EXACT [OBOL:automatic] synonym: "vesical neck non-striated muscle" EXACT [OBOL:automatic] synonym: "vesical neck smooth muscle" EXACT [OBOL:automatic] synonym: "vesical neck smooth muscle tissue" EXACT [OBOL:automatic] xref: MA:0001699 is_a: UBERON:0004228 ! implied link automatically realized ! urinary bladder smooth muscle relationship: part_of UBERON:0001258 intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0001258 ! neck of urinary bladder [Term] id: UBERON:0004231 name: anal region smooth muscle def: "A portion of smooth muscle tissue that is part of an anal region [Obol]." [OBOL:automatic] synonym: "anal part of perineum involuntary muscle" EXACT [OBOL:automatic] synonym: "anal part of perineum non-striated muscle" EXACT [OBOL:automatic] synonym: "anal part of perineum smooth muscle" EXACT [OBOL:automatic] synonym: "anal part of perineum smooth muscle tissue" EXACT [OBOL:automatic] synonym: "anal region involuntary muscle" EXACT [OBOL:automatic] synonym: "anal region non-striated muscle" EXACT [OBOL:automatic] synonym: "anal region smooth muscle tissue" EXACT [OBOL:automatic] synonym: "anal triangle involuntary muscle" EXACT [OBOL:automatic] synonym: "anal triangle non-striated muscle" EXACT [OBOL:automatic] synonym: "anal triangle smooth muscle" EXACT [OBOL:automatic] synonym: "anal triangle smooth muscle tissue" EXACT [OBOL:automatic] synonym: "involuntary muscle of anal part of perineum" EXACT [OBOL:automatic] synonym: "involuntary muscle of anal region" EXACT [OBOL:automatic] synonym: "involuntary muscle of anal triangle" EXACT [OBOL:automatic] synonym: "non-striated muscle of anal part of perineum" EXACT [OBOL:automatic] synonym: "non-striated muscle of anal region" EXACT [OBOL:automatic] synonym: "non-striated muscle of anal triangle" EXACT [OBOL:automatic] synonym: "smooth muscle of anal part of perineum" EXACT [OBOL:automatic] synonym: "smooth muscle of anal region" EXACT [OBOL:automatic] synonym: "smooth muscle of anal triangle" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of anal part of perineum" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of anal region" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of anal triangle" EXACT [OBOL:automatic] xref: MA:0001532 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001135 ! implied link automatically realized ! smooth muscle tissue relationship: part_of UBERON:0001353 intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0001353 ! anal region [Term] id: UBERON:0004232 name: lymphatic vessel smooth muscle def: "A portion of smooth muscle tissue that is part of a lymphatic vessel [Obol]." [OBOL:automatic] synonym: "involuntary muscle of lymph vessel" EXACT [OBOL:automatic] synonym: "involuntary muscle of lymphatic vessel" EXACT [OBOL:automatic] synonym: "lymph vessel involuntary muscle" EXACT [OBOL:automatic] synonym: "lymph vessel non-striated muscle" EXACT [OBOL:automatic] synonym: "lymph vessel smooth muscle" EXACT [OBOL:automatic] synonym: "lymph vessel smooth muscle tissue" EXACT [OBOL:automatic] synonym: "lymphatic vessel involuntary muscle" EXACT [OBOL:automatic] synonym: "lymphatic vessel non-striated muscle" EXACT [OBOL:automatic] synonym: "lymphatic vessel smooth muscle tissue" EXACT [OBOL:automatic] synonym: "non-striated muscle of lymph vessel" EXACT [OBOL:automatic] synonym: "non-striated muscle of lymphatic vessel" EXACT [OBOL:automatic] synonym: "smooth muscle of lymph vessel" EXACT [OBOL:automatic] synonym: "smooth muscle of lymphatic vessel" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of lymph vessel" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of lymphatic vessel" EXACT [OBOL:automatic] xref: MA:0000751 xref: ncithesaurus:Lymphatic_Vessel_Smooth_Muscle_Tissue is_a: UBERON:0001135 ! implied link automatically realized ! smooth muscle tissue relationship: part_of UBERON:0001473 intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0001473 ! lymphatic vessel [Term] id: UBERON:0004233 name: lower respiratory tract smooth muscle def: "A portion of smooth muscle tissue that is part of a lower respiratory tract [Obol]." [OBOL:automatic] synonym: "involuntary muscle of lower respiratory tract" EXACT [OBOL:automatic] synonym: "lower respiratory tract involuntary muscle" EXACT [OBOL:automatic] synonym: "lower respiratory tract non-striated muscle" EXACT [OBOL:automatic] synonym: "lower respiratory tract smooth muscle tissue" EXACT [OBOL:automatic] synonym: "non-striated muscle of lower respiratory tract" EXACT [OBOL:automatic] synonym: "smooth muscle of lower respiratory tract" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of lower respiratory tract" EXACT [OBOL:automatic] xref: MA:0002410 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004225 ! implied link automatically realized ! respiratory system smooth muscle relationship: part_of UBERON:0001558 intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0001558 ! lower respiratory tract [Term] id: UBERON:0004234 name: iris smooth muscle def: "A portion of smooth muscle tissue that is part of a iris [Obol]." [OBOL:automatic] synonym: "involuntary muscle of iris" EXACT [OBOL:automatic] synonym: "iris involuntary muscle" EXACT [OBOL:automatic] synonym: "iris non-striated muscle" EXACT [OBOL:automatic] synonym: "iris smooth muscle tissue" EXACT [OBOL:automatic] synonym: "non-striated muscle of iris" EXACT [OBOL:automatic] synonym: "smooth muscle of iris" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of iris" EXACT [OBOL:automatic] xref: BTO:0000655 xref: MA:0001270 is_a: UBERON:0001606 ! muscle of iris is_a: UBERON:0003386 ! implied link automatically realized ! smooth muscle of eye relationship: part_of UBERON:0001769 intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0001769 ! iris [Term] id: UBERON:0004235 name: mammary gland smooth muscle def: "A portion of smooth muscle tissue that is part of a lactiferous gland [Obol]." [OBOL:automatic] synonym: "involuntary muscle of lactiferous gland" EXACT [OBOL:automatic] synonym: "involuntary muscle of lobe of breast" EXACT [OBOL:automatic] synonym: "involuntary muscle of lobe of mammary gland" EXACT [OBOL:automatic] synonym: "involuntary muscle of mammary gland" EXACT [OBOL:automatic] synonym: "lactiferous gland involuntary muscle" EXACT [OBOL:automatic] synonym: "lactiferous gland non-striated muscle" EXACT [OBOL:automatic] synonym: "lactiferous gland smooth muscle" EXACT [OBOL:automatic] synonym: "lactiferous gland smooth muscle tissue" EXACT [OBOL:automatic] synonym: "lobe of breast involuntary muscle" EXACT [OBOL:automatic] synonym: "lobe of breast non-striated muscle" EXACT [OBOL:automatic] synonym: "lobe of breast smooth muscle" EXACT [OBOL:automatic] synonym: "lobe of breast smooth muscle tissue" EXACT [OBOL:automatic] synonym: "lobe of mammary gland involuntary muscle" EXACT [OBOL:automatic] synonym: "lobe of mammary gland non-striated muscle" EXACT [OBOL:automatic] synonym: "lobe of mammary gland smooth muscle" EXACT [OBOL:automatic] synonym: "lobe of mammary gland smooth muscle tissue" EXACT [OBOL:automatic] synonym: "mammary gland involuntary muscle" EXACT [OBOL:automatic] synonym: "mammary gland non-striated muscle" EXACT [OBOL:automatic] synonym: "mammary gland smooth muscle tissue" EXACT [OBOL:automatic] synonym: "non-striated muscle of lactiferous gland" EXACT [OBOL:automatic] synonym: "non-striated muscle of lobe of breast" EXACT [OBOL:automatic] synonym: "non-striated muscle of lobe of mammary gland" EXACT [OBOL:automatic] synonym: "non-striated muscle of mammary gland" EXACT [OBOL:automatic] synonym: "smooth muscle of lactiferous gland" EXACT [OBOL:automatic] synonym: "smooth muscle of lobe of breast" EXACT [OBOL:automatic] synonym: "smooth muscle of lobe of mammary gland" EXACT [OBOL:automatic] synonym: "smooth muscle of mammary gland" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of lactiferous gland" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of lobe of breast" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of lobe of mammary gland" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of mammary gland" EXACT [OBOL:automatic] xref: MA:0000795 is_a: UBERON:0001135 ! implied link automatically realized ! smooth muscle tissue is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001911 intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0001911 ! mammary gland [Term] id: UBERON:0004236 name: arteriole smooth muscle def: "A portion of smooth muscle tissue that is part of an arteriole [Obol]." [OBOL:automatic] xref: MA:0000706 is_a: UBERON:0002111 ! implied link automatically realized ! smooth muscle of artery relationship: part_of UBERON:0001980 intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0001980 ! arteriole [Term] id: UBERON:0004237 name: blood vessel smooth muscle def: "A portion of smooth muscle tissue that is part of a blood vessel [Obol]." [OBOL:automatic] synonym: "blood vessel involuntary muscle" EXACT [OBOL:automatic] synonym: "blood vessel non-striated muscle" EXACT [OBOL:automatic] synonym: "blood vessel smooth muscle tissue" EXACT [OBOL:automatic] synonym: "involuntary muscle of blood vessel" EXACT [OBOL:automatic] synonym: "non-striated muscle of blood vessel" EXACT [OBOL:automatic] synonym: "smooth muscle of blood vessel" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of blood vessel" EXACT [OBOL:automatic] xref: MA:0000710 is_a: UBERON:0001135 ! implied link automatically realized ! smooth muscle tissue relationship: part_of UBERON:0001981 intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0001981 ! blood vessel [Term] id: UBERON:0004238 name: spleen smooth muscle def: "A portion of smooth muscle tissue that is part of a spleen [Obol]." [OBOL:automatic] synonym: "involuntary muscle of spleen" EXACT [OBOL:automatic] synonym: "non-striated muscle of spleen" EXACT [OBOL:automatic] synonym: "smooth muscle of spleen" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of spleen" EXACT [OBOL:automatic] synonym: "spleen involuntary muscle" EXACT [OBOL:automatic] synonym: "spleen non-striated muscle" EXACT [OBOL:automatic] synonym: "spleen smooth muscle tissue" EXACT [OBOL:automatic] xref: MA:0000757 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001135 ! implied link automatically realized ! smooth muscle tissue relationship: part_of UBERON:0002106 intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0002106 ! spleen [Term] id: UBERON:0004239 name: small intestine smooth muscle def: "A portion of smooth muscle tissue that is part of a small intestine [Obol]." [OBOL:automatic] synonym: "involuntary muscle of small bowel" EXACT [OBOL:automatic] synonym: "involuntary muscle of small intestine" EXACT [OBOL:automatic] synonym: "non-striated muscle of small bowel" EXACT [OBOL:automatic] synonym: "non-striated muscle of small intestine" EXACT [OBOL:automatic] synonym: "small bowel involuntary muscle" EXACT [OBOL:automatic] synonym: "small bowel non-striated muscle" EXACT [OBOL:automatic] synonym: "small bowel smooth muscle" EXACT [OBOL:automatic] synonym: "small bowel smooth muscle tissue" EXACT [OBOL:automatic] synonym: "small intestine involuntary muscle" EXACT [OBOL:automatic] synonym: "small intestine non-striated muscle" EXACT [OBOL:automatic] synonym: "small intestine smooth muscle tissue" EXACT [OBOL:automatic] synonym: "smooth muscle of small bowel" EXACT [OBOL:automatic] synonym: "smooth muscle of small intestine" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of small bowel" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of small intestine" EXACT [OBOL:automatic] xref: MA:0001559 is_a: UBERON:0004221 ! implied link automatically realized ! intestine smooth muscle relationship: part_of UBERON:0002108 intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0002108 ! small intestine relationship: part_of UBERON:0001168 ! wall of small intestine [Term] id: UBERON:0004240 name: gall bladder smooth muscle def: "A portion of smooth muscle tissue that is part of a gallbladder [Obol]." [OBOL:automatic] synonym: "biliary smooth muscle" RELATED [MA:0001635] synonym: "gall bladder involuntary muscle" EXACT [OBOL:automatic] synonym: "gall bladder non-striated muscle" EXACT [OBOL:automatic] synonym: "gall bladder smooth muscle tissue" EXACT [OBOL:automatic] synonym: "gallbladder involuntary muscle" EXACT [OBOL:automatic] synonym: "gallbladder non-striated muscle" EXACT [OBOL:automatic] synonym: "gallbladder smooth muscle" EXACT [OBOL:automatic] synonym: "gallbladder smooth muscle tissue" EXACT [OBOL:automatic] synonym: "involuntary muscle of gall bladder" EXACT [OBOL:automatic] synonym: "involuntary muscle of gallbladder" EXACT [OBOL:automatic] synonym: "non-striated muscle of gall bladder" EXACT [OBOL:automatic] synonym: "non-striated muscle of gallbladder" EXACT [OBOL:automatic] synonym: "smooth muscle of gall bladder" EXACT [OBOL:automatic] synonym: "smooth muscle of gallbladder" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of gall bladder" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of gallbladder" EXACT [OBOL:automatic] xref: MA:0001635 xref: ncithesaurus:Gallbladder_Smooth_Muscle_Tissue is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001135 ! implied link automatically realized ! smooth muscle tissue relationship: part_of UBERON:0002110 intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0002110 ! gallbladder [Term] id: UBERON:0004241 name: main bronchus smooth muscle def: "A portion of smooth muscle tissue that is part of a main bronchus [Obol]." [OBOL:automatic] synonym: "bronchus principalis involuntary muscle" EXACT [OBOL:automatic] synonym: "bronchus principalis non-striated muscle" EXACT [OBOL:automatic] synonym: "bronchus principalis smooth muscle" EXACT [OBOL:automatic] synonym: "bronchus principalis smooth muscle tissue" EXACT [OBOL:automatic] synonym: "involuntary muscle of bronchus principalis" EXACT [OBOL:automatic] synonym: "involuntary muscle of main bronchus" EXACT [OBOL:automatic] synonym: "involuntary muscle of primary bronchus" EXACT [OBOL:automatic] synonym: "involuntary muscle of principal bronchus" EXACT [OBOL:automatic] synonym: "main bronchus involuntary muscle" EXACT [OBOL:automatic] synonym: "main bronchus non-striated muscle" EXACT [OBOL:automatic] synonym: "main bronchus smooth muscle tissue" EXACT [OBOL:automatic] synonym: "non-striated muscle of bronchus principalis" EXACT [OBOL:automatic] synonym: "non-striated muscle of main bronchus" EXACT [OBOL:automatic] synonym: "non-striated muscle of primary bronchus" EXACT [OBOL:automatic] synonym: "non-striated muscle of principal bronchus" EXACT [OBOL:automatic] synonym: "primary bronchus involuntary muscle" EXACT [OBOL:automatic] synonym: "primary bronchus non-striated muscle" EXACT [OBOL:automatic] synonym: "primary bronchus smooth muscle" EXACT [OBOL:automatic] synonym: "primary bronchus smooth muscle tissue" EXACT [OBOL:automatic] synonym: "principal bronchus involuntary muscle" EXACT [OBOL:automatic] synonym: "principal bronchus non-striated muscle" EXACT [OBOL:automatic] synonym: "principal bronchus smooth muscle" EXACT [OBOL:automatic] synonym: "principal bronchus smooth muscle tissue" EXACT [OBOL:automatic] synonym: "smooth muscle of bronchus principalis" EXACT [OBOL:automatic] synonym: "smooth muscle of main bronchus" EXACT [OBOL:automatic] synonym: "smooth muscle of primary bronchus" EXACT [OBOL:automatic] synonym: "smooth muscle of principal bronchus" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of bronchus principalis" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of main bronchus" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of primary bronchus" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of principal bronchus" EXACT [OBOL:automatic] xref: MA:0001848 is_a: UBERON:0004242 ! implied link automatically realized ! bronchus smooth muscle relationship: part_of UBERON:0002182 intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0002182 ! main bronchus [Term] id: UBERON:0004242 name: bronchus smooth muscle def: "A portion of smooth muscle tissue that is part of a bronchus [Obol]." [OBOL:automatic] synonym: "bronchi involuntary muscle" EXACT [OBOL:automatic] synonym: "bronchi non-striated muscle" EXACT [OBOL:automatic] synonym: "bronchi smooth muscle" EXACT [OBOL:automatic] synonym: "bronchi smooth muscle tissue" EXACT [OBOL:automatic] synonym: "bronchial trunk involuntary muscle" EXACT [OBOL:automatic] synonym: "bronchial trunk non-striated muscle" EXACT [OBOL:automatic] synonym: "bronchial trunk smooth muscle" EXACT [OBOL:automatic] synonym: "bronchial trunk smooth muscle tissue" EXACT [OBOL:automatic] synonym: "bronchus involuntary muscle" EXACT [OBOL:automatic] synonym: "bronchus non-striated muscle" EXACT [OBOL:automatic] synonym: "bronchus smooth muscle tissue" EXACT [OBOL:automatic] synonym: "involuntary muscle of bronchi" EXACT [OBOL:automatic] synonym: "involuntary muscle of bronchial trunk" EXACT [OBOL:automatic] synonym: "involuntary muscle of bronchus" EXACT [OBOL:automatic] synonym: "non-striated muscle of bronchi" EXACT [OBOL:automatic] synonym: "non-striated muscle of bronchial trunk" EXACT [OBOL:automatic] synonym: "non-striated muscle of bronchus" EXACT [OBOL:automatic] synonym: "smooth muscle of bronchi" EXACT [OBOL:automatic] synonym: "smooth muscle of bronchial trunk" EXACT [OBOL:automatic] synonym: "smooth muscle of bronchus" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of bronchi" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of bronchial trunk" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of bronchus" EXACT [OBOL:automatic] xref: MA:0001840 xref: ncithesaurus:Bronchus_Smooth_Muscle_Tissue is_a: UBERON:0004233 ! implied link automatically realized ! lower respiratory tract smooth muscle relationship: part_of UBERON:0002185 intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0002185 ! bronchus [Term] id: UBERON:0004243 name: prostate gland smooth muscle def: "A portion of smooth muscle tissue that is part of a prostate gland [Obol]." [OBOL:automatic] synonym: "involuntary muscle of prostate" EXACT [OBOL:automatic] synonym: "involuntary muscle of prostate gland" EXACT [OBOL:automatic] synonym: "muscular tissue of prostate" EXACT [FMA:74245] synonym: "non-striated muscle of prostate" EXACT [OBOL:automatic] synonym: "non-striated muscle of prostate gland" EXACT [OBOL:automatic] synonym: "prostate gland involuntary muscle" EXACT [OBOL:automatic] synonym: "prostate gland non-striated muscle" EXACT [OBOL:automatic] synonym: "prostate gland smooth muscle tissue" EXACT [OBOL:automatic] synonym: "prostate involuntary muscle" EXACT [OBOL:automatic] synonym: "prostate non-striated muscle" EXACT [OBOL:automatic] synonym: "prostate smooth muscle" EXACT [OBOL:automatic] synonym: "prostate smooth muscle tissue" EXACT [OBOL:automatic] synonym: "smooth muscle of prostate" EXACT [OBOL:automatic] synonym: "smooth muscle of prostate gland" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of prostate" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of prostate gland" EXACT [OBOL:automatic] synonym: "substantia muscularis prostatae" EXACT [FMA:74245, FMA:TA] xref: BTO:0003159 xref: FMA:74245 xref: MA:0001741 is_a: UBERON:0001135 ! implied link automatically realized ! smooth muscle tissue is_a: UBERON:0008715 ! implied link automatically realized ! muscle tissue of prostate relationship: part_of UBERON:0002367 intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0002367 ! prostate gland [Term] id: UBERON:0004245 name: oviduct smooth muscle def: "A portion of smooth muscle tissue that is part of a fallopian tube [Obol]." [OBOL:automatic] synonym: "fallopian tube involuntary muscle" EXACT [OBOL:automatic] synonym: "fallopian tube non-striated muscle" EXACT [OBOL:automatic] synonym: "fallopian tube smooth muscle" EXACT [OBOL:automatic] synonym: "fallopian tube smooth muscle tissue" EXACT [OBOL:automatic] synonym: "involuntary muscle of fallopian tube" EXACT [OBOL:automatic] synonym: "non-striated muscle of fallopian tube" EXACT [OBOL:automatic] synonym: "smooth muscle of fallopian tube" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of fallopian tube" EXACT [OBOL:automatic] xref: MA:0001721 is_a: UBERON:0001135 ! implied link automatically realized ! smooth muscle tissue is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0003889 intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0003889 ! fallopian tube [Term] id: UBERON:0004246 name: outflow tract smooth muscle def: "A portion of smooth muscle tissue that is part of a outflow tract [Obol]." [OBOL:automatic] synonym: "involuntary muscle of outflow tract" EXACT [OBOL:automatic] synonym: "non-striated muscle of outflow tract" EXACT [OBOL:automatic] synonym: "outflow tract involuntary muscle" EXACT [OBOL:automatic] synonym: "outflow tract non-striated muscle" EXACT [OBOL:automatic] synonym: "outflow tract smooth muscle tissue" EXACT [OBOL:automatic] synonym: "smooth muscle of outflow tract" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of outflow tract" EXACT [OBOL:automatic] xref: MA:0000492 is_a: UBERON:0001135 ! implied link automatically realized ! smooth muscle tissue relationship: part_of UBERON:0004145 intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0004145 ! outflow tract [Term] id: UBERON:0004247 name: back bone def: "A bone that is part of a back [Obol]." [OBOL:automatic] synonym: "back bone organ" EXACT [OBOL:automatic] synonym: "bone of back" EXACT [OBOL:automatic] synonym: "bone organ of back" EXACT [OBOL:automatic] xref: MA:0000494 is_a: UBERON:0003463 ! implied link automatically realized ! trunk bone is_a: UBERON:0005174 ! implied link automatically realized ! back organ relationship: part_of UBERON:0001137 intersection_of: UBERON:0001474 ! bone intersection_of: part_of UBERON:0001137 ! back [Term] id: UBERON:0004248 name: foot digit bone def: "A bone that is part of a toe [Obol]." [OBOL:automatic] synonym: "bone of digit of foot" EXACT [OBOL:automatic] synonym: "bone of digit of terminal segment of free lower limb" EXACT [OBOL:automatic] synonym: "bone of digitus pedis" EXACT [OBOL:automatic] synonym: "bone of foot digit" EXACT [OBOL:automatic] synonym: "bone of terminal segment of free lower limb digit" EXACT [OBOL:automatic] synonym: "bone of toe" EXACT [OBOL:automatic] synonym: "bone organ of digit of foot" EXACT [OBOL:automatic] synonym: "bone organ of digit of terminal segment of free lower limb" EXACT [OBOL:automatic] synonym: "bone organ of digitus pedis" EXACT [OBOL:automatic] synonym: "bone organ of foot digit" EXACT [OBOL:automatic] synonym: "bone organ of terminal segment of free lower limb digit" EXACT [OBOL:automatic] synonym: "bone organ of toe" EXACT [OBOL:automatic] synonym: "digit of foot bone" EXACT [OBOL:automatic] synonym: "digit of foot bone organ" EXACT [OBOL:automatic] synonym: "digit of terminal segment of free lower limb bone" EXACT [OBOL:automatic] synonym: "digit of terminal segment of free lower limb bone organ" EXACT [OBOL:automatic] synonym: "digitus pedis bone" EXACT [OBOL:automatic] synonym: "digitus pedis bone organ" EXACT [OBOL:automatic] synonym: "foot digit bone organ" EXACT [OBOL:automatic] synonym: "terminal segment of free lower limb digit bone" EXACT [OBOL:automatic] synonym: "terminal segment of free lower limb digit bone organ" EXACT [OBOL:automatic] synonym: "toe bone" EXACT [OBOL:automatic] synonym: "toe bone organ" EXACT [OBOL:automatic] xref: MA:0000646 is_a: UBERON:0005899 ! implied link automatically realized ! foot bone relationship: part_of UBERON:0001466 intersection_of: UBERON:0001474 ! bone intersection_of: part_of UBERON:0001466 ! foot digit [Term] id: UBERON:0004249 name: hand digit bone def: "A bone that is part of a finger [Obol]." [OBOL:automatic] synonym: "bone of digit of hand" EXACT [OBOL:automatic] synonym: "bone of digit of terminal segment of free upper limb" EXACT [OBOL:automatic] synonym: "bone of digitus manus" EXACT [OBOL:automatic] synonym: "bone of finger" EXACT [OBOL:automatic] synonym: "bone of hand digit" EXACT [OBOL:automatic] synonym: "bone of terminal segment of free upper limb digit" EXACT [OBOL:automatic] synonym: "bone organ of digit of hand" EXACT [OBOL:automatic] synonym: "bone organ of digit of terminal segment of free upper limb" EXACT [OBOL:automatic] synonym: "bone organ of digitus manus" EXACT [OBOL:automatic] synonym: "bone organ of finger" EXACT [OBOL:automatic] synonym: "bone organ of hand digit" EXACT [OBOL:automatic] synonym: "bone organ of terminal segment of free upper limb digit" EXACT [OBOL:automatic] synonym: "digit of hand bone" EXACT [OBOL:automatic] synonym: "digit of hand bone organ" EXACT [OBOL:automatic] synonym: "digit of terminal segment of free upper limb bone" EXACT [OBOL:automatic] synonym: "digit of terminal segment of free upper limb bone organ" EXACT [OBOL:automatic] synonym: "digitus manus bone" EXACT [OBOL:automatic] synonym: "digitus manus bone organ" EXACT [OBOL:automatic] synonym: "finger bone" EXACT [OBOL:automatic] synonym: "finger bone organ" EXACT [OBOL:automatic] synonym: "hand digit bone organ" EXACT [OBOL:automatic] synonym: "terminal segment of free upper limb digit bone" EXACT [OBOL:automatic] synonym: "terminal segment of free upper limb digit bone organ" EXACT [OBOL:automatic] xref: MA:0000622 is_a: UBERON:0005897 ! implied link automatically realized ! hand bone relationship: part_of UBERON:0002389 intersection_of: UBERON:0001474 ! bone intersection_of: part_of UBERON:0002389 ! hand digit [Term] id: UBERON:0004250 name: upper arm bone def: "A bone that is part of a forelimb stylopod [Obol]." [OBOL:automatic] synonym: "arm stylopod bone" EXACT [OBOL:automatic] synonym: "arm stylopod bone organ" EXACT [OBOL:automatic] synonym: "bone of arm stylopod" EXACT [OBOL:automatic] synonym: "bone of brachial region stylopod" EXACT [OBOL:automatic] synonym: "bone of Proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "bone of proximal segment of free upper limb stylopod" EXACT [OBOL:automatic] synonym: "bone of stylopod of arm" EXACT [OBOL:automatic] synonym: "bone of stylopod of brachial region" EXACT [OBOL:automatic] synonym: "bone of stylopod of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "bone of upper arm" EXACT [OBOL:automatic] synonym: "bone organ of arm stylopod" EXACT [OBOL:automatic] synonym: "bone organ of brachial region stylopod" EXACT [OBOL:automatic] synonym: "bone organ of Proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "bone organ of proximal segment of free upper limb stylopod" EXACT [OBOL:automatic] synonym: "bone organ of stylopod of arm" EXACT [OBOL:automatic] synonym: "bone organ of stylopod of brachial region" EXACT [OBOL:automatic] synonym: "bone organ of stylopod of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "bone organ of upper arm" EXACT [OBOL:automatic] synonym: "brachial region stylopod bone" EXACT [OBOL:automatic] synonym: "brachial region stylopod bone organ" EXACT [OBOL:automatic] synonym: "Proximal segment of free upper limb bone" EXACT [OBOL:automatic] synonym: "Proximal segment of free upper limb bone organ" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb stylopod bone" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb stylopod bone organ" EXACT [OBOL:automatic] synonym: "stylopod of arm bone" EXACT [OBOL:automatic] synonym: "stylopod of arm bone organ" EXACT [OBOL:automatic] synonym: "stylopod of brachial region bone" EXACT [OBOL:automatic] synonym: "stylopod of brachial region bone organ" EXACT [OBOL:automatic] synonym: "stylopod of proximal segment of free upper limb bone" EXACT [OBOL:automatic] synonym: "stylopod of proximal segment of free upper limb bone organ" EXACT [OBOL:automatic] synonym: "upper arm bone organ" EXACT [OBOL:automatic] xref: MA:0000604 is_a: UBERON:0003460 ! implied link automatically realized ! arm bone relationship: part_of UBERON:0003822 intersection_of: UBERON:0001474 ! bone intersection_of: part_of UBERON:0003822 ! forelimb stylopod [Term] id: UBERON:0004251 name: lower leg bone def: "A bone that is part of a lower leg [Obol]." [OBOL:automatic] synonym: "bone of hind limb middle limb segment" EXACT [OBOL:automatic] synonym: "bone of hind limb zeugopod" EXACT [OBOL:automatic] synonym: "bone of hindlimb middle limb segment" EXACT [OBOL:automatic] synonym: "bone of hindlimb zeugopod" EXACT [OBOL:automatic] synonym: "bone of inferior member middle limb segment" EXACT [OBOL:automatic] synonym: "bone of inferior member zeugopod" EXACT [OBOL:automatic] synonym: "bone of intermediate segment of free lower limb" EXACT [OBOL:automatic] synonym: "bone of lower extremity middle limb segment" EXACT [OBOL:automatic] synonym: "bone of lower extremity zeugopod" EXACT [OBOL:automatic] synonym: "bone of lower leg" EXACT [OBOL:automatic] synonym: "bone of middle limb segment of hind limb" EXACT [OBOL:automatic] synonym: "bone of middle limb segment of hindlimb" EXACT [OBOL:automatic] synonym: "bone of middle limb segment of inferior member" EXACT [OBOL:automatic] synonym: "bone of middle limb segment of lower extremity" EXACT [OBOL:automatic] synonym: "bone of zeugopod of hind limb" EXACT [OBOL:automatic] synonym: "bone of zeugopod of hindlimb" EXACT [OBOL:automatic] synonym: "bone of zeugopod of inferior member" EXACT [OBOL:automatic] synonym: "bone of zeugopod of leg" EXACT [OBOL:automatic] synonym: "bone of zeugopod of lower extremity" EXACT [OBOL:automatic] synonym: "bone organ of hind limb middle limb segment" EXACT [OBOL:automatic] synonym: "bone organ of hind limb zeugopod" EXACT [OBOL:automatic] synonym: "bone organ of hindlimb middle limb segment" EXACT [OBOL:automatic] synonym: "bone organ of hindlimb zeugopod" EXACT [OBOL:automatic] synonym: "bone organ of inferior member middle limb segment" EXACT [OBOL:automatic] synonym: "bone organ of inferior member zeugopod" EXACT [OBOL:automatic] synonym: "bone organ of intermediate segment of free lower limb" EXACT [OBOL:automatic] synonym: "bone organ of lower extremity middle limb segment" EXACT [OBOL:automatic] synonym: "bone organ of lower extremity zeugopod" EXACT [OBOL:automatic] synonym: "bone organ of lower leg" EXACT [OBOL:automatic] synonym: "bone organ of middle limb segment of hind limb" EXACT [OBOL:automatic] synonym: "bone organ of middle limb segment of hindlimb" EXACT [OBOL:automatic] synonym: "bone organ of middle limb segment of inferior member" EXACT [OBOL:automatic] synonym: "bone organ of middle limb segment of lower extremity" EXACT [OBOL:automatic] synonym: "bone organ of zeugopod of hind limb" EXACT [OBOL:automatic] synonym: "bone organ of zeugopod of hindlimb" EXACT [OBOL:automatic] synonym: "bone organ of zeugopod of inferior member" EXACT [OBOL:automatic] synonym: "bone organ of zeugopod of leg" EXACT [OBOL:automatic] synonym: "bone organ of zeugopod of lower extremity" EXACT [OBOL:automatic] synonym: "hind limb middle limb segment bone" EXACT [OBOL:automatic] synonym: "hind limb middle limb segment bone organ" EXACT [OBOL:automatic] synonym: "hind limb zeugopod bone" EXACT [OBOL:automatic] synonym: "hind limb zeugopod bone organ" EXACT [OBOL:automatic] synonym: "hindlimb middle limb segment bone" EXACT [OBOL:automatic] synonym: "hindlimb middle limb segment bone organ" EXACT [OBOL:automatic] synonym: "hindlimb zeugopod bone" EXACT [OBOL:automatic] synonym: "hindlimb zeugopod bone organ" EXACT [OBOL:automatic] synonym: "inferior member middle limb segment bone" EXACT [OBOL:automatic] synonym: "inferior member middle limb segment bone organ" EXACT [OBOL:automatic] synonym: "inferior member zeugopod bone" EXACT [OBOL:automatic] synonym: "inferior member zeugopod bone organ" EXACT [OBOL:automatic] synonym: "intermediate segment of free lower limb bone" EXACT [OBOL:automatic] synonym: "intermediate segment of free lower limb bone organ" EXACT [OBOL:automatic] synonym: "lower extremity middle limb segment bone" EXACT [OBOL:automatic] synonym: "lower extremity middle limb segment bone organ" EXACT [OBOL:automatic] synonym: "lower extremity zeugopod bone" EXACT [OBOL:automatic] synonym: "lower extremity zeugopod bone organ" EXACT [OBOL:automatic] synonym: "lower leg bone organ" EXACT [OBOL:automatic] synonym: "middle limb segment of hind limb bone" EXACT [OBOL:automatic] synonym: "middle limb segment of hind limb bone organ" EXACT [OBOL:automatic] synonym: "middle limb segment of hindlimb bone" EXACT [OBOL:automatic] synonym: "middle limb segment of hindlimb bone organ" EXACT [OBOL:automatic] synonym: "middle limb segment of inferior member bone" EXACT [OBOL:automatic] synonym: "middle limb segment of inferior member bone organ" EXACT [OBOL:automatic] synonym: "middle limb segment of lower extremity bone" EXACT [OBOL:automatic] synonym: "middle limb segment of lower extremity bone organ" EXACT [OBOL:automatic] synonym: "zeugopod of hind limb bone" EXACT [OBOL:automatic] synonym: "zeugopod of hind limb bone organ" EXACT [OBOL:automatic] synonym: "zeugopod of hindlimb bone" EXACT [OBOL:automatic] synonym: "zeugopod of hindlimb bone organ" EXACT [OBOL:automatic] synonym: "zeugopod of inferior member bone" EXACT [OBOL:automatic] synonym: "zeugopod of inferior member bone organ" EXACT [OBOL:automatic] synonym: "zeugopod of leg bone" EXACT [OBOL:automatic] synonym: "zeugopod of leg bone organ" EXACT [OBOL:automatic] synonym: "zeugopod of lower extremity bone" EXACT [OBOL:automatic] synonym: "zeugopod of lower extremity bone organ" EXACT [OBOL:automatic] xref: MA:0000676 is_a: UBERON:0003464 ! implied link automatically realized ! hindlimb bone relationship: part_of UBERON:0003823 intersection_of: UBERON:0001474 ! bone intersection_of: part_of UBERON:0003823 ! hindlimb zeugopod [Term] id: UBERON:0004252 name: hindlimb stylopod muscle alt_id: UBERON:0000374 alt_id: UBERON:BTO_0001367-FMA_22470 def: "A muscle organ that is part of a hindlimb stylopod (upper leg)[Obol]." [OBOL:automatic] synonym: "muscle of thigh" EXACT [FMA:22470] synonym: "thigh muscle" EXACT [FMA:22470] synonym: "upper leg muscle" EXACT [MA:0000684] xref: BTO:0001367 xref: FMA:22470 xref: MA:0000684 is_a: UBERON:0001383 ! implied link automatically realized ! muscle of leg relationship: part_of UBERON:0000376 intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0000376 ! hindlimb stylopod [Term] id: UBERON:0004253 name: skin muscle def: "A muscle organ that is part of a skin of body [Obol]." [OBOL:automatic] synonym: "muscle organ of skin" EXACT [OBOL:automatic] synonym: "skin muscle organ" EXACT [OBOL:automatic] xref: MA:0002710 is_a: UBERON:0001630 ! implied link automatically realized ! muscle organ relationship: part_of UBERON:0002097 intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0002097 ! skin of body [Term] id: UBERON:0004254 name: forelimb zeugopod muscle def: "A muscle organ that is part of a forelimb zeugopod (lower arm)[Obol]." [OBOL:automatic] synonym: "forearm muscle" EXACT [FMA:37371] synonym: "lower arm muscle" EXACT [MA:0000600] synonym: "muscle of forearm" EXACT [FMA:37371] xref: FMA:37371 xref: MA:0000600 xref: SCTID:181631004 is_a: UBERON:0001499 ! implied link automatically realized ! muscle of arm relationship: part_of UBERON:0002386 intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0002386 ! forelimb zeugopod [Term] id: UBERON:0004255 name: forelimb stylopod muscle def: "A muscle organ that is part of a forelimb stylopod (upper arm)[Obol]." [OBOL:automatic] synonym: "muscle of arm" RELATED INCONSISTENT [FMA:37370] synonym: "upper arm muscle" EXACT [MA:0000606] xref: FMA:37370 xref: MA:0000606 xref: SCTID:244979005 is_a: UBERON:0001499 ! implied link automatically realized ! muscle of arm relationship: part_of UBERON:0003822 intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0003822 ! forelimb stylopod [Term] id: UBERON:0004256 name: hindlimb zeugopod muscle def: "A muscle organ that is part of a hindlimb zeugopod (lower leg) [Obol]." [OBOL:automatic] synonym: "lower leg muscle" EXACT [MA:0000678] synonym: "muscle of leg" RELATED INCONSISTENT [FMA:22471] xref: FMA:22471 xref: MA:0000678 is_a: UBERON:0003663 ! implied link automatically realized ! hindlimb muscle relationship: part_of UBERON:0003823 intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0003823 ! hindlimb zeugopod [Term] id: UBERON:0004257 name: upper leg blood vessel def: "A blood vessel that is part of a hindlimb stylopod [Obol]." [OBOL:automatic] synonym: "blood vessel of stylopod of hind limb" EXACT [OBOL:automatic] synonym: "blood vessel of stylopod of hindlimb" EXACT [OBOL:automatic] synonym: "blood vessel of thigh" EXACT [OBOL:automatic] synonym: "blood vessel of upper leg" EXACT [OBOL:automatic] synonym: "hind limb stylopod blood vessel" EXACT [OBOL:automatic] synonym: "hindlimb stylopod blood vessel" EXACT [OBOL:automatic] synonym: "thigh blood vessel" EXACT [OBOL:automatic] xref: MA:0000681 is_a: UBERON:0003503 ! implied link automatically realized ! leg blood vessel is_a: UBERON:0005225 ! implied link automatically realized ! upper leg epithelium relationship: part_of UBERON:0000376 intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0000376 ! hindlimb stylopod [Term] id: UBERON:0004258 name: back blood vessel def: "A blood vessel that is part of a back [Obol]." [OBOL:automatic] synonym: "blood vessel of back" EXACT [OBOL:automatic] xref: MA:0000493 is_a: UBERON:0003513 ! implied link automatically realized ! trunk blood vessel relationship: part_of UBERON:0001137 intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0001137 ! back [Term] id: UBERON:0004259 name: lower arm blood vessel def: "A blood vessel that is part of a lower arm [Obol]." [OBOL:automatic] synonym: "forelimb zeugopod blood vessel" EXACT [UBERON:cjm] xref: MA:0000597 is_a: UBERON:0003247 ! implied link automatically realized ! epithelium of forearm is_a: UBERON:0003507 ! implied link automatically realized ! arm blood vessel relationship: part_of UBERON:0002386 intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0002386 ! forelimb zeugopod [Term] id: UBERON:0004260 name: upper arm blood vessel def: "A blood vessel that is part of a forelimb stylopod [Obol]." [OBOL:automatic] synonym: "forelimb stylopod blood vessel" EXACT [UBERON:cjm] xref: MA:0000603 is_a: UBERON:0003507 ! implied link automatically realized ! arm blood vessel is_a: UBERON:0005228 ! implied link automatically realized ! upper arm epithelium relationship: part_of UBERON:0003822 intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0003822 ! forelimb stylopod [Term] id: UBERON:0004261 name: lower leg blood vessel def: "A blood vessel that is part of a lower leg [Obol]." [OBOL:automatic] synonym: "hindlimb zeugopod blood vessel" EXACT [UBERON:cjm] xref: MA:0000675 is_a: UBERON:0003516 ! implied link automatically realized ! hindlimb blood vessel is_a: UBERON:0005229 ! implied link automatically realized ! lower leg epithelium relationship: part_of UBERON:0003823 intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0003823 ! hindlimb zeugopod [Term] id: UBERON:0004262 name: upper leg skin def: "A zone of skin that is part of a hindlimb stylopod [Obol]." [OBOL:automatic] synonym: "hind limb stylopod skin" EXACT [OBOL:automatic] synonym: "hindlimb stylopod skin" EXACT [OBOL:automatic] synonym: "inferior member stylopod skin" EXACT [OBOL:automatic] synonym: "lower extremity stylopod skin" EXACT [OBOL:automatic] synonym: "Proximal segment of free lower limb skin" EXACT [OBOL:automatic] synonym: "skin of hind limb stylopod" EXACT [OBOL:automatic] synonym: "skin of hindlimb stylopod" EXACT [OBOL:automatic] synonym: "skin of inferior member stylopod" EXACT [OBOL:automatic] synonym: "skin of lower extremity stylopod" EXACT [OBOL:automatic] synonym: "skin of Proximal segment of free lower limb" EXACT [OBOL:automatic] synonym: "skin of stylopod of hind limb" EXACT [OBOL:automatic] synonym: "skin of stylopod of hindlimb" EXACT [OBOL:automatic] synonym: "skin of stylopod of inferior member" EXACT [OBOL:automatic] synonym: "skin of stylopod of lower extremity" EXACT [OBOL:automatic] synonym: "skin of stylopod of lower limb" EXACT [OBOL:automatic] synonym: "skin of thigh" EXACT [OBOL:automatic] synonym: "skin of upper leg" EXACT [OBOL:automatic] synonym: "stylopod of hind limb skin" EXACT [OBOL:automatic] synonym: "stylopod of hindlimb skin" EXACT [OBOL:automatic] synonym: "stylopod of inferior member skin" EXACT [OBOL:automatic] synonym: "stylopod of lower extremity skin" EXACT [OBOL:automatic] synonym: "stylopod of lower limb skin" EXACT [OBOL:automatic] synonym: "thigh skin" EXACT [OBOL:automatic] xref: EMAPA:18159 xref: FMA:37790 xref: MA:0000686 xref: SCTID:181547006 is_a: UBERON:0001511 ! implied link automatically realized ! skin of leg relationship: part_of UBERON:0000376 intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0000376 ! hindlimb stylopod [Term] id: UBERON:0004263 name: upper arm skin def: "A zone of skin that is part of a forelimb stylopod [Obol]." [OBOL:automatic] synonym: "arm stylopod skin" EXACT [OBOL:automatic] synonym: "brachial region stylopod skin" EXACT [OBOL:automatic] synonym: "Proximal segment of free upper limb skin" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb stylopod skin" EXACT [OBOL:automatic] synonym: "skin of arm stylopod" EXACT [OBOL:automatic] synonym: "skin of brachial region stylopod" EXACT [OBOL:automatic] synonym: "skin of Proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "skin of proximal segment of free upper limb stylopod" EXACT [OBOL:automatic] synonym: "skin of stylopod of arm" EXACT [OBOL:automatic] synonym: "skin of stylopod of brachial region" EXACT [OBOL:automatic] synonym: "skin of stylopod of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "skin of upper arm" EXACT [OBOL:automatic] synonym: "stylopod of arm skin" EXACT [OBOL:automatic] synonym: "stylopod of brachial region skin" EXACT [OBOL:automatic] synonym: "stylopod of proximal segment of free upper limb skin" EXACT [OBOL:automatic] xref: EMAPA:18062 xref: MA:0000608 xref: SCTID:181531009 is_a: UBERON:0002427 ! implied link automatically realized ! arm skin relationship: part_of UBERON:0003822 intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0003822 ! forelimb stylopod [Term] id: UBERON:0004264 name: lower leg skin def: "A zone of skin that is part of a lower leg [Obol]." [OBOL:automatic] synonym: "hind limb middle limb segment skin" EXACT [OBOL:automatic] synonym: "hind limb zeugopod skin" EXACT [OBOL:automatic] synonym: "hindlimb middle limb segment skin" EXACT [OBOL:automatic] synonym: "hindlimb zeugopod skin" EXACT [OBOL:automatic] synonym: "inferior member middle limb segment skin" EXACT [OBOL:automatic] synonym: "inferior member zeugopod skin" EXACT [OBOL:automatic] synonym: "intermediate segment of free lower limb skin" EXACT [OBOL:automatic] synonym: "lower extremity middle limb segment skin" EXACT [OBOL:automatic] synonym: "lower extremity zeugopod skin" EXACT [OBOL:automatic] synonym: "middle limb segment of hind limb skin" EXACT [OBOL:automatic] synonym: "middle limb segment of hindlimb skin" EXACT [OBOL:automatic] synonym: "middle limb segment of inferior member skin" EXACT [OBOL:automatic] synonym: "middle limb segment of lower extremity skin" EXACT [OBOL:automatic] synonym: "skin of hind limb middle limb segment" EXACT [OBOL:automatic] synonym: "skin of hind limb zeugopod" EXACT [OBOL:automatic] synonym: "skin of hindlimb middle limb segment" EXACT [OBOL:automatic] synonym: "skin of hindlimb zeugopod" EXACT [OBOL:automatic] synonym: "skin of inferior member middle limb segment" EXACT [OBOL:automatic] synonym: "skin of inferior member zeugopod" EXACT [OBOL:automatic] synonym: "skin of intermediate segment of free lower limb" EXACT [OBOL:automatic] synonym: "skin of lower extremity middle limb segment" EXACT [OBOL:automatic] synonym: "skin of lower extremity zeugopod" EXACT [OBOL:automatic] synonym: "skin of lower leg" EXACT [OBOL:automatic] synonym: "skin of middle limb segment of hind limb" EXACT [OBOL:automatic] synonym: "skin of middle limb segment of hindlimb" EXACT [OBOL:automatic] synonym: "skin of middle limb segment of inferior member" EXACT [OBOL:automatic] synonym: "skin of middle limb segment of lower extremity" EXACT [OBOL:automatic] synonym: "skin of zeugopod of hind limb" EXACT [OBOL:automatic] synonym: "skin of zeugopod of hindlimb" EXACT [OBOL:automatic] synonym: "skin of zeugopod of inferior member" EXACT [OBOL:automatic] synonym: "skin of zeugopod of leg" EXACT [OBOL:automatic] synonym: "skin of zeugopod of lower extremity" EXACT [OBOL:automatic] synonym: "zeugopod of hind limb skin" EXACT [OBOL:automatic] synonym: "zeugopod of hindlimb skin" EXACT [OBOL:automatic] synonym: "zeugopod of inferior member skin" EXACT [OBOL:automatic] synonym: "zeugopod of leg skin" EXACT [OBOL:automatic] synonym: "zeugopod of lower extremity skin" EXACT [OBOL:automatic] xref: EMAPA:18156 xref: MA:0000680 xref: SCTID:244180007 is_a: UBERON:0003532 ! implied link automatically realized ! hindlimb skin relationship: part_of UBERON:0003823 intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0003823 ! hindlimb zeugopod [Term] id: UBERON:0004265 name: outflow tract myocardium def: "A myocardium that is part of a outflow tract [Obol]." [OBOL:automatic] synonym: "cardiac muscle of outflow tract" EXACT [OBOL:automatic] synonym: "heart muscle of outflow tract" EXACT [OBOL:automatic] synonym: "heart myocardium of outflow tract" EXACT [OBOL:automatic] synonym: "muscle of heart of outflow tract" EXACT [OBOL:automatic] synonym: "myocardium of outflow tract" EXACT [OBOL:automatic] synonym: "outflow tract cardiac muscle" EXACT [OBOL:automatic] synonym: "outflow tract heart muscle" EXACT [OBOL:automatic] synonym: "outflow tract heart myocardium" EXACT [OBOL:automatic] synonym: "outflow tract muscle of heart" EXACT [OBOL:automatic] xref: EHDAA2:0001358 xref: MA:0000489 xref: OG:0000603 is_a: UBERON:0002349 ! implied link automatically realized ! myocardium relationship: part_of UBERON:0004145 intersection_of: UBERON:0002349 ! myocardium intersection_of: part_of UBERON:0004145 ! outflow tract [Term] id: UBERON:0004266 name: upper leg connective tissue def: "A portion of connective tissue that is part of a hindlimb stylopod [Obol]." [OBOL:automatic] synonym: "connective tissue of hind limb stylopod" EXACT [OBOL:automatic] synonym: "connective tissue of hindlimb stylopod" EXACT [OBOL:automatic] synonym: "connective tissue of inferior member stylopod" EXACT [OBOL:automatic] synonym: "connective tissue of lower extremity stylopod" EXACT [OBOL:automatic] synonym: "connective tissue of Proximal segment of free lower limb" EXACT [OBOL:automatic] synonym: "connective tissue of stylopod of hind limb" EXACT [OBOL:automatic] synonym: "connective tissue of stylopod of hindlimb" EXACT [OBOL:automatic] synonym: "connective tissue of stylopod of inferior member" EXACT [OBOL:automatic] synonym: "connective tissue of stylopod of lower extremity" EXACT [OBOL:automatic] synonym: "connective tissue of stylopod of lower limb" EXACT [OBOL:automatic] synonym: "connective tissue of thigh" EXACT [OBOL:automatic] synonym: "connective tissue of upper leg" EXACT [OBOL:automatic] synonym: "hind limb stylopod connective tissue" EXACT [OBOL:automatic] synonym: "hind limb stylopod portion of connective tissue" EXACT [OBOL:automatic] synonym: "hind limb stylopod textus connectivus" EXACT [OBOL:automatic] synonym: "hindlimb stylopod connective tissue" EXACT [OBOL:automatic] synonym: "hindlimb stylopod portion of connective tissue" EXACT [OBOL:automatic] synonym: "hindlimb stylopod textus connectivus" EXACT [OBOL:automatic] synonym: "inferior member stylopod connective tissue" EXACT [OBOL:automatic] synonym: "inferior member stylopod portion of connective tissue" EXACT [OBOL:automatic] synonym: "inferior member stylopod textus connectivus" EXACT [OBOL:automatic] synonym: "lower extremity stylopod connective tissue" EXACT [OBOL:automatic] synonym: "lower extremity stylopod portion of connective tissue" EXACT [OBOL:automatic] synonym: "lower extremity stylopod textus connectivus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of hind limb stylopod" EXACT [OBOL:automatic] synonym: "portion of connective tissue of hindlimb stylopod" EXACT [OBOL:automatic] synonym: "portion of connective tissue of inferior member stylopod" EXACT [OBOL:automatic] synonym: "portion of connective tissue of lower extremity stylopod" EXACT [OBOL:automatic] synonym: "portion of connective tissue of Proximal segment of free lower limb" EXACT [OBOL:automatic] synonym: "portion of connective tissue of stylopod of hind limb" EXACT [OBOL:automatic] synonym: "portion of connective tissue of stylopod of hindlimb" EXACT [OBOL:automatic] synonym: "portion of connective tissue of stylopod of inferior member" EXACT [OBOL:automatic] synonym: "portion of connective tissue of stylopod of lower extremity" EXACT [OBOL:automatic] synonym: "portion of connective tissue of stylopod of lower limb" EXACT [OBOL:automatic] synonym: "portion of connective tissue of thigh" EXACT [OBOL:automatic] synonym: "portion of connective tissue of upper leg" EXACT [OBOL:automatic] synonym: "Proximal segment of free lower limb connective tissue" EXACT [OBOL:automatic] synonym: "Proximal segment of free lower limb portion of connective tissue" EXACT [OBOL:automatic] synonym: "Proximal segment of free lower limb textus connectivus" EXACT [OBOL:automatic] synonym: "stylopod of hind limb connective tissue" EXACT [OBOL:automatic] synonym: "stylopod of hind limb portion of connective tissue" EXACT [OBOL:automatic] synonym: "stylopod of hind limb textus connectivus" EXACT [OBOL:automatic] synonym: "stylopod of hindlimb connective tissue" EXACT [OBOL:automatic] synonym: "stylopod of hindlimb portion of connective tissue" EXACT [OBOL:automatic] synonym: "stylopod of hindlimb textus connectivus" EXACT [OBOL:automatic] synonym: "stylopod of inferior member connective tissue" EXACT [OBOL:automatic] synonym: "stylopod of inferior member portion of connective tissue" EXACT [OBOL:automatic] synonym: "stylopod of inferior member textus connectivus" EXACT [OBOL:automatic] synonym: "stylopod of lower extremity connective tissue" EXACT [OBOL:automatic] synonym: "stylopod of lower extremity portion of connective tissue" EXACT [OBOL:automatic] synonym: "stylopod of lower extremity textus connectivus" EXACT [OBOL:automatic] synonym: "stylopod of lower limb connective tissue" EXACT [OBOL:automatic] synonym: "stylopod of lower limb portion of connective tissue" EXACT [OBOL:automatic] synonym: "stylopod of lower limb textus connectivus" EXACT [OBOL:automatic] synonym: "textus connectivus of hind limb stylopod" EXACT [OBOL:automatic] synonym: "textus connectivus of hindlimb stylopod" EXACT [OBOL:automatic] synonym: "textus connectivus of inferior member stylopod" EXACT [OBOL:automatic] synonym: "textus connectivus of lower extremity stylopod" EXACT [OBOL:automatic] synonym: "textus connectivus of Proximal segment of free lower limb" EXACT [OBOL:automatic] synonym: "textus connectivus of stylopod of hind limb" EXACT [OBOL:automatic] synonym: "textus connectivus of stylopod of hindlimb" EXACT [OBOL:automatic] synonym: "textus connectivus of stylopod of inferior member" EXACT [OBOL:automatic] synonym: "textus connectivus of stylopod of lower extremity" EXACT [OBOL:automatic] synonym: "textus connectivus of stylopod of lower limb" EXACT [OBOL:automatic] synonym: "textus connectivus of thigh" EXACT [OBOL:automatic] synonym: "textus connectivus of upper leg" EXACT [OBOL:automatic] synonym: "thigh connective tissue" EXACT [OBOL:automatic] synonym: "thigh portion of connective tissue" EXACT [OBOL:automatic] synonym: "thigh textus connectivus" EXACT [OBOL:automatic] synonym: "upper leg portion of connective tissue" EXACT [OBOL:automatic] synonym: "upper leg textus connectivus" EXACT [OBOL:automatic] xref: MA:0000683 is_a: UBERON:0003569 ! implied link automatically realized ! leg connective tissue relationship: part_of UBERON:0000376 intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0000376 ! hindlimb stylopod [Term] id: UBERON:0004267 name: back connective tissue def: "A portion of connective tissue that is part of a back [Obol]." [OBOL:automatic] synonym: "back portion of connective tissue" EXACT [OBOL:automatic] synonym: "back textus connectivus" EXACT [OBOL:automatic] synonym: "connective tissue of back" EXACT [OBOL:automatic] synonym: "portion of connective tissue of back" EXACT [OBOL:automatic] synonym: "textus connectivus of back" EXACT [OBOL:automatic] xref: MA:0000495 is_a: UBERON:0003586 ! implied link automatically realized ! trunk connective tissue relationship: part_of UBERON:0001137 intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0001137 ! back [Term] id: UBERON:0004268 name: lower arm connective tissue def: "A portion of connective tissue that is part of a lower arm [Obol]." [OBOL:automatic] synonym: "antebrachial region connective tissue" EXACT [OBOL:automatic] synonym: "antebrachial region portion of connective tissue" EXACT [OBOL:automatic] synonym: "antebrachial region textus connectivus" EXACT [OBOL:automatic] synonym: "arm middle limb segment connective tissue" EXACT [OBOL:automatic] synonym: "arm middle limb segment portion of connective tissue" EXACT [OBOL:automatic] synonym: "arm middle limb segment textus connectivus" EXACT [OBOL:automatic] synonym: "arm zeugopod connective tissue" EXACT [OBOL:automatic] synonym: "arm zeugopod portion of connective tissue" EXACT [OBOL:automatic] synonym: "arm zeugopod textus connectivus" EXACT [OBOL:automatic] synonym: "brachial region middle limb segment connective tissue" EXACT [OBOL:automatic] synonym: "brachial region middle limb segment portion of connective tissue" EXACT [OBOL:automatic] synonym: "brachial region middle limb segment textus connectivus" EXACT [OBOL:automatic] synonym: "brachial region zeugopod connective tissue" EXACT [OBOL:automatic] synonym: "brachial region zeugopod portion of connective tissue" EXACT [OBOL:automatic] synonym: "brachial region zeugopod textus connectivus" EXACT [OBOL:automatic] synonym: "connective tissue of antebrachial region" EXACT [OBOL:automatic] synonym: "connective tissue of arm middle limb segment" EXACT [OBOL:automatic] synonym: "connective tissue of arm zeugopod" EXACT [OBOL:automatic] synonym: "connective tissue of brachial region middle limb segment" EXACT [OBOL:automatic] synonym: "connective tissue of brachial region zeugopod" EXACT [OBOL:automatic] synonym: "connective tissue of intermediate segment of free upper limb" EXACT [OBOL:automatic] synonym: "connective tissue of lower arm" EXACT [OBOL:automatic] synonym: "connective tissue of lower segment of arm" EXACT [OBOL:automatic] synonym: "connective tissue of middle limb segment of arm" EXACT [OBOL:automatic] synonym: "connective tissue of middle limb segment of brachial region" EXACT [OBOL:automatic] synonym: "connective tissue of middle limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "connective tissue of proximal segment of free upper limb middle limb segment" EXACT [OBOL:automatic] synonym: "connective tissue of proximal segment of free upper limb zeugopod" EXACT [OBOL:automatic] synonym: "connective tissue of zeugopod of arm" EXACT [OBOL:automatic] synonym: "connective tissue of zeugopod of brachial region" EXACT [OBOL:automatic] synonym: "connective tissue of zeugopod of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "intermediate segment of free upper limb connective tissue" EXACT [OBOL:automatic] synonym: "intermediate segment of free upper limb portion of connective tissue" EXACT [OBOL:automatic] synonym: "intermediate segment of free upper limb textus connectivus" EXACT [OBOL:automatic] synonym: "lower arm portion of connective tissue" EXACT [OBOL:automatic] synonym: "lower arm textus connectivus" EXACT [OBOL:automatic] synonym: "lower segment of arm connective tissue" EXACT [OBOL:automatic] synonym: "lower segment of arm portion of connective tissue" EXACT [OBOL:automatic] synonym: "lower segment of arm textus connectivus" EXACT [OBOL:automatic] synonym: "middle limb segment of arm connective tissue" EXACT [OBOL:automatic] synonym: "middle limb segment of arm portion of connective tissue" EXACT [OBOL:automatic] synonym: "middle limb segment of arm textus connectivus" EXACT [OBOL:automatic] synonym: "middle limb segment of brachial region connective tissue" EXACT [OBOL:automatic] synonym: "middle limb segment of brachial region portion of connective tissue" EXACT [OBOL:automatic] synonym: "middle limb segment of brachial region textus connectivus" EXACT [OBOL:automatic] synonym: "middle limb segment of proximal segment of free upper limb connective tissue" EXACT [OBOL:automatic] synonym: "middle limb segment of proximal segment of free upper limb portion of connective tissue" EXACT [OBOL:automatic] synonym: "middle limb segment of proximal segment of free upper limb textus connectivus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of antebrachial region" EXACT [OBOL:automatic] synonym: "portion of connective tissue of arm middle limb segment" EXACT [OBOL:automatic] synonym: "portion of connective tissue of arm zeugopod" EXACT [OBOL:automatic] synonym: "portion of connective tissue of brachial region middle limb segment" EXACT [OBOL:automatic] synonym: "portion of connective tissue of brachial region zeugopod" EXACT [OBOL:automatic] synonym: "portion of connective tissue of intermediate segment of free upper limb" EXACT [OBOL:automatic] synonym: "portion of connective tissue of lower arm" EXACT [OBOL:automatic] synonym: "portion of connective tissue of lower segment of arm" EXACT [OBOL:automatic] synonym: "portion of connective tissue of middle limb segment of arm" EXACT [OBOL:automatic] synonym: "portion of connective tissue of middle limb segment of brachial region" EXACT [OBOL:automatic] synonym: "portion of connective tissue of middle limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "portion of connective tissue of proximal segment of free upper limb middle limb segment" EXACT [OBOL:automatic] synonym: "portion of connective tissue of proximal segment of free upper limb zeugopod" EXACT [OBOL:automatic] synonym: "portion of connective tissue of zeugopod of arm" EXACT [OBOL:automatic] synonym: "portion of connective tissue of zeugopod of brachial region" EXACT [OBOL:automatic] synonym: "portion of connective tissue of zeugopod of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb middle limb segment connective tissue" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb middle limb segment portion of connective tissue" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb middle limb segment textus connectivus" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb zeugopod connective tissue" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb zeugopod portion of connective tissue" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb zeugopod textus connectivus" EXACT [OBOL:automatic] synonym: "textus connectivus of antebrachial region" EXACT [OBOL:automatic] synonym: "textus connectivus of arm middle limb segment" EXACT [OBOL:automatic] synonym: "textus connectivus of arm zeugopod" EXACT [OBOL:automatic] synonym: "textus connectivus of brachial region middle limb segment" EXACT [OBOL:automatic] synonym: "textus connectivus of brachial region zeugopod" EXACT [OBOL:automatic] synonym: "textus connectivus of intermediate segment of free upper limb" EXACT [OBOL:automatic] synonym: "textus connectivus of lower arm" EXACT [OBOL:automatic] synonym: "textus connectivus of lower segment of arm" EXACT [OBOL:automatic] synonym: "textus connectivus of middle limb segment of arm" EXACT [OBOL:automatic] synonym: "textus connectivus of middle limb segment of brachial region" EXACT [OBOL:automatic] synonym: "textus connectivus of middle limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "textus connectivus of proximal segment of free upper limb middle limb segment" EXACT [OBOL:automatic] synonym: "textus connectivus of proximal segment of free upper limb zeugopod" EXACT [OBOL:automatic] synonym: "textus connectivus of zeugopod of arm" EXACT [OBOL:automatic] synonym: "textus connectivus of zeugopod of brachial region" EXACT [OBOL:automatic] synonym: "textus connectivus of zeugopod of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "zeugopod of arm connective tissue" EXACT [OBOL:automatic] synonym: "zeugopod of arm portion of connective tissue" EXACT [OBOL:automatic] synonym: "zeugopod of arm textus connectivus" EXACT [OBOL:automatic] synonym: "zeugopod of brachial region connective tissue" EXACT [OBOL:automatic] synonym: "zeugopod of brachial region portion of connective tissue" EXACT [OBOL:automatic] synonym: "zeugopod of brachial region textus connectivus" EXACT [OBOL:automatic] synonym: "zeugopod of proximal segment of free upper limb connective tissue" EXACT [OBOL:automatic] synonym: "zeugopod of proximal segment of free upper limb portion of connective tissue" EXACT [OBOL:automatic] synonym: "zeugopod of proximal segment of free upper limb textus connectivus" EXACT [OBOL:automatic] xref: MA:0000599 is_a: UBERON:0003573 ! implied link automatically realized ! arm connective tissue relationship: part_of UBERON:0002386 intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0002386 ! forelimb zeugopod [Term] id: UBERON:0004269 name: upper arm connective tissue def: "A portion of connective tissue that is part of a forelimb stylopod [Obol]." [OBOL:automatic] synonym: "arm stylopod connective tissue" EXACT [OBOL:automatic] synonym: "arm stylopod portion of connective tissue" EXACT [OBOL:automatic] synonym: "arm stylopod textus connectivus" EXACT [OBOL:automatic] synonym: "brachial region stylopod connective tissue" EXACT [OBOL:automatic] synonym: "brachial region stylopod portion of connective tissue" EXACT [OBOL:automatic] synonym: "brachial region stylopod textus connectivus" EXACT [OBOL:automatic] synonym: "connective tissue of arm stylopod" EXACT [OBOL:automatic] synonym: "connective tissue of brachial region stylopod" EXACT [OBOL:automatic] synonym: "connective tissue of Proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "connective tissue of proximal segment of free upper limb stylopod" EXACT [OBOL:automatic] synonym: "connective tissue of stylopod of arm" EXACT [OBOL:automatic] synonym: "connective tissue of stylopod of brachial region" EXACT [OBOL:automatic] synonym: "connective tissue of stylopod of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "connective tissue of upper arm" EXACT [OBOL:automatic] synonym: "portion of connective tissue of arm stylopod" EXACT [OBOL:automatic] synonym: "portion of connective tissue of brachial region stylopod" EXACT [OBOL:automatic] synonym: "portion of connective tissue of Proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "portion of connective tissue of proximal segment of free upper limb stylopod" EXACT [OBOL:automatic] synonym: "portion of connective tissue of stylopod of arm" EXACT [OBOL:automatic] synonym: "portion of connective tissue of stylopod of brachial region" EXACT [OBOL:automatic] synonym: "portion of connective tissue of stylopod of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "portion of connective tissue of upper arm" EXACT [OBOL:automatic] synonym: "Proximal segment of free upper limb connective tissue" EXACT [OBOL:automatic] synonym: "Proximal segment of free upper limb portion of connective tissue" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb stylopod connective tissue" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb stylopod portion of connective tissue" EXACT [OBOL:automatic] synonym: "proximal segment of free upper limb stylopod textus connectivus" EXACT [OBOL:automatic] synonym: "Proximal segment of free upper limb textus connectivus" EXACT [OBOL:automatic] synonym: "stylopod of arm connective tissue" EXACT [OBOL:automatic] synonym: "stylopod of arm portion of connective tissue" EXACT [OBOL:automatic] synonym: "stylopod of arm textus connectivus" EXACT [OBOL:automatic] synonym: "stylopod of brachial region connective tissue" EXACT [OBOL:automatic] synonym: "stylopod of brachial region portion of connective tissue" EXACT [OBOL:automatic] synonym: "stylopod of brachial region textus connectivus" EXACT [OBOL:automatic] synonym: "stylopod of proximal segment of free upper limb connective tissue" EXACT [OBOL:automatic] synonym: "stylopod of proximal segment of free upper limb portion of connective tissue" EXACT [OBOL:automatic] synonym: "stylopod of proximal segment of free upper limb textus connectivus" EXACT [OBOL:automatic] synonym: "textus connectivus of arm stylopod" EXACT [OBOL:automatic] synonym: "textus connectivus of brachial region stylopod" EXACT [OBOL:automatic] synonym: "textus connectivus of Proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "textus connectivus of proximal segment of free upper limb stylopod" EXACT [OBOL:automatic] synonym: "textus connectivus of stylopod of arm" EXACT [OBOL:automatic] synonym: "textus connectivus of stylopod of brachial region" EXACT [OBOL:automatic] synonym: "textus connectivus of stylopod of proximal segment of free upper limb" EXACT [OBOL:automatic] synonym: "textus connectivus of upper arm" EXACT [OBOL:automatic] synonym: "upper arm portion of connective tissue" EXACT [OBOL:automatic] synonym: "upper arm textus connectivus" EXACT [OBOL:automatic] xref: MA:0000605 is_a: UBERON:0003573 ! implied link automatically realized ! arm connective tissue relationship: part_of UBERON:0003822 intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0003822 ! forelimb stylopod [Term] id: UBERON:0004270 name: lower leg connective tissue def: "A portion of connective tissue that is part of a lower leg [Obol]." [OBOL:automatic] synonym: "connective tissue of hind limb middle limb segment" EXACT [OBOL:automatic] synonym: "connective tissue of hind limb zeugopod" EXACT [OBOL:automatic] synonym: "connective tissue of hindlimb middle limb segment" EXACT [OBOL:automatic] synonym: "connective tissue of hindlimb zeugopod" EXACT [OBOL:automatic] synonym: "connective tissue of inferior member middle limb segment" EXACT [OBOL:automatic] synonym: "connective tissue of inferior member zeugopod" EXACT [OBOL:automatic] synonym: "connective tissue of intermediate segment of free lower limb" EXACT [OBOL:automatic] synonym: "connective tissue of lower extremity middle limb segment" EXACT [OBOL:automatic] synonym: "connective tissue of lower extremity zeugopod" EXACT [OBOL:automatic] synonym: "connective tissue of lower leg" EXACT [OBOL:automatic] synonym: "connective tissue of middle limb segment of hind limb" EXACT [OBOL:automatic] synonym: "connective tissue of middle limb segment of hindlimb" EXACT [OBOL:automatic] synonym: "connective tissue of middle limb segment of inferior member" EXACT [OBOL:automatic] synonym: "connective tissue of middle limb segment of lower extremity" EXACT [OBOL:automatic] synonym: "connective tissue of zeugopod of hind limb" EXACT [OBOL:automatic] synonym: "connective tissue of zeugopod of hindlimb" EXACT [OBOL:automatic] synonym: "connective tissue of zeugopod of inferior member" EXACT [OBOL:automatic] synonym: "connective tissue of zeugopod of leg" EXACT [OBOL:automatic] synonym: "connective tissue of zeugopod of lower extremity" EXACT [OBOL:automatic] synonym: "hind limb middle limb segment connective tissue" EXACT [OBOL:automatic] synonym: "hind limb middle limb segment portion of connective tissue" EXACT [OBOL:automatic] synonym: "hind limb middle limb segment textus connectivus" EXACT [OBOL:automatic] synonym: "hind limb zeugopod connective tissue" EXACT [OBOL:automatic] synonym: "hind limb zeugopod portion of connective tissue" EXACT [OBOL:automatic] synonym: "hind limb zeugopod textus connectivus" EXACT [OBOL:automatic] synonym: "hindlimb middle limb segment connective tissue" EXACT [OBOL:automatic] synonym: "hindlimb middle limb segment portion of connective tissue" EXACT [OBOL:automatic] synonym: "hindlimb middle limb segment textus connectivus" EXACT [OBOL:automatic] synonym: "hindlimb zeugopod connective tissue" EXACT [OBOL:automatic] synonym: "hindlimb zeugopod portion of connective tissue" EXACT [OBOL:automatic] synonym: "hindlimb zeugopod textus connectivus" EXACT [OBOL:automatic] synonym: "inferior member middle limb segment connective tissue" EXACT [OBOL:automatic] synonym: "inferior member middle limb segment portion of connective tissue" EXACT [OBOL:automatic] synonym: "inferior member middle limb segment textus connectivus" EXACT [OBOL:automatic] synonym: "inferior member zeugopod connective tissue" EXACT [OBOL:automatic] synonym: "inferior member zeugopod portion of connective tissue" EXACT [OBOL:automatic] synonym: "inferior member zeugopod textus connectivus" EXACT [OBOL:automatic] synonym: "intermediate segment of free lower limb connective tissue" EXACT [OBOL:automatic] synonym: "intermediate segment of free lower limb portion of connective tissue" EXACT [OBOL:automatic] synonym: "intermediate segment of free lower limb textus connectivus" EXACT [OBOL:automatic] synonym: "lower extremity middle limb segment connective tissue" EXACT [OBOL:automatic] synonym: "lower extremity middle limb segment portion of connective tissue" EXACT [OBOL:automatic] synonym: "lower extremity middle limb segment textus connectivus" EXACT [OBOL:automatic] synonym: "lower extremity zeugopod connective tissue" EXACT [OBOL:automatic] synonym: "lower extremity zeugopod portion of connective tissue" EXACT [OBOL:automatic] synonym: "lower extremity zeugopod textus connectivus" EXACT [OBOL:automatic] synonym: "lower leg portion of connective tissue" EXACT [OBOL:automatic] synonym: "lower leg textus connectivus" EXACT [OBOL:automatic] synonym: "middle limb segment of hind limb connective tissue" EXACT [OBOL:automatic] synonym: "middle limb segment of hind limb portion of connective tissue" EXACT [OBOL:automatic] synonym: "middle limb segment of hind limb textus connectivus" EXACT [OBOL:automatic] synonym: "middle limb segment of hindlimb connective tissue" EXACT [OBOL:automatic] synonym: "middle limb segment of hindlimb portion of connective tissue" EXACT [OBOL:automatic] synonym: "middle limb segment of hindlimb textus connectivus" EXACT [OBOL:automatic] synonym: "middle limb segment of inferior member connective tissue" EXACT [OBOL:automatic] synonym: "middle limb segment of inferior member portion of connective tissue" EXACT [OBOL:automatic] synonym: "middle limb segment of inferior member textus connectivus" EXACT [OBOL:automatic] synonym: "middle limb segment of lower extremity connective tissue" EXACT [OBOL:automatic] synonym: "middle limb segment of lower extremity portion of connective tissue" EXACT [OBOL:automatic] synonym: "middle limb segment of lower extremity textus connectivus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of hind limb middle limb segment" EXACT [OBOL:automatic] synonym: "portion of connective tissue of hind limb zeugopod" EXACT [OBOL:automatic] synonym: "portion of connective tissue of hindlimb middle limb segment" EXACT [OBOL:automatic] synonym: "portion of connective tissue of hindlimb zeugopod" EXACT [OBOL:automatic] synonym: "portion of connective tissue of inferior member middle limb segment" EXACT [OBOL:automatic] synonym: "portion of connective tissue of inferior member zeugopod" EXACT [OBOL:automatic] synonym: "portion of connective tissue of intermediate segment of free lower limb" EXACT [OBOL:automatic] synonym: "portion of connective tissue of lower extremity middle limb segment" EXACT [OBOL:automatic] synonym: "portion of connective tissue of lower extremity zeugopod" EXACT [OBOL:automatic] synonym: "portion of connective tissue of lower leg" EXACT [OBOL:automatic] synonym: "portion of connective tissue of middle limb segment of hind limb" EXACT [OBOL:automatic] synonym: "portion of connective tissue of middle limb segment of hindlimb" EXACT [OBOL:automatic] synonym: "portion of connective tissue of middle limb segment of inferior member" EXACT [OBOL:automatic] synonym: "portion of connective tissue of middle limb segment of lower extremity" EXACT [OBOL:automatic] synonym: "portion of connective tissue of zeugopod of hind limb" EXACT [OBOL:automatic] synonym: "portion of connective tissue of zeugopod of hindlimb" EXACT [OBOL:automatic] synonym: "portion of connective tissue of zeugopod of inferior member" EXACT [OBOL:automatic] synonym: "portion of connective tissue of zeugopod of leg" EXACT [OBOL:automatic] synonym: "portion of connective tissue of zeugopod of lower extremity" EXACT [OBOL:automatic] synonym: "textus connectivus of hind limb middle limb segment" EXACT [OBOL:automatic] synonym: "textus connectivus of hind limb zeugopod" EXACT [OBOL:automatic] synonym: "textus connectivus of hindlimb middle limb segment" EXACT [OBOL:automatic] synonym: "textus connectivus of hindlimb zeugopod" EXACT [OBOL:automatic] synonym: "textus connectivus of inferior member middle limb segment" EXACT [OBOL:automatic] synonym: "textus connectivus of inferior member zeugopod" EXACT [OBOL:automatic] synonym: "textus connectivus of intermediate segment of free lower limb" EXACT [OBOL:automatic] synonym: "textus connectivus of lower extremity middle limb segment" EXACT [OBOL:automatic] synonym: "textus connectivus of lower extremity zeugopod" EXACT [OBOL:automatic] synonym: "textus connectivus of lower leg" EXACT [OBOL:automatic] synonym: "textus connectivus of middle limb segment of hind limb" EXACT [OBOL:automatic] synonym: "textus connectivus of middle limb segment of hindlimb" EXACT [OBOL:automatic] synonym: "textus connectivus of middle limb segment of inferior member" EXACT [OBOL:automatic] synonym: "textus connectivus of middle limb segment of lower extremity" EXACT [OBOL:automatic] synonym: "textus connectivus of zeugopod of hind limb" EXACT [OBOL:automatic] synonym: "textus connectivus of zeugopod of hindlimb" EXACT [OBOL:automatic] synonym: "textus connectivus of zeugopod of inferior member" EXACT [OBOL:automatic] synonym: "textus connectivus of zeugopod of leg" EXACT [OBOL:automatic] synonym: "textus connectivus of zeugopod of lower extremity" EXACT [OBOL:automatic] synonym: "zeugopod of hind limb connective tissue" EXACT [OBOL:automatic] synonym: "zeugopod of hind limb portion of connective tissue" EXACT [OBOL:automatic] synonym: "zeugopod of hind limb textus connectivus" EXACT [OBOL:automatic] synonym: "zeugopod of hindlimb connective tissue" EXACT [OBOL:automatic] synonym: "zeugopod of hindlimb portion of connective tissue" EXACT [OBOL:automatic] synonym: "zeugopod of hindlimb textus connectivus" EXACT [OBOL:automatic] synonym: "zeugopod of inferior member connective tissue" EXACT [OBOL:automatic] synonym: "zeugopod of inferior member portion of connective tissue" EXACT [OBOL:automatic] synonym: "zeugopod of inferior member textus connectivus" EXACT [OBOL:automatic] synonym: "zeugopod of leg connective tissue" EXACT [OBOL:automatic] synonym: "zeugopod of leg portion of connective tissue" EXACT [OBOL:automatic] synonym: "zeugopod of leg textus connectivus" EXACT [OBOL:automatic] synonym: "zeugopod of lower extremity connective tissue" EXACT [OBOL:automatic] synonym: "zeugopod of lower extremity portion of connective tissue" EXACT [OBOL:automatic] synonym: "zeugopod of lower extremity textus connectivus" EXACT [OBOL:automatic] xref: MA:0000677 is_a: UBERON:0003589 ! implied link automatically realized ! hindlimb connective tissue relationship: part_of UBERON:0003823 intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0003823 ! hindlimb zeugopod [Term] id: UBERON:0004271 name: outflow tract pericardium def: "A pericardium that is part of a outflow tract [Obol]." [OBOL:automatic] synonym: "pericardium of outflow tract" EXACT [OBOL:automatic] xref: MA:0000491 is_a: UBERON:0002407 ! implied link automatically realized ! pericardium relationship: part_of UBERON:0004145 intersection_of: UBERON:0002407 ! pericardium intersection_of: part_of UBERON:0004145 ! outflow tract [Term] id: UBERON:0004273 name: cartilaginous joint suture def: "A cranial suture that is part of a cartilaginous joint [Obol]." [OBOL:automatic] synonym: "articulatio cartilaginea cranial suture" EXACT [OBOL:automatic] synonym: "articulatio cartilaginea cranial sutures" EXACT [OBOL:automatic] synonym: "articulatio cartilaginea cranial sutures set" EXACT [OBOL:automatic] synonym: "articulatio cartilaginea cranium suture" EXACT [OBOL:automatic] synonym: "articulatio cartilaginea suture of cranium" EXACT [OBOL:automatic] synonym: "cartilaginous joint cranial suture" EXACT [OBOL:automatic] synonym: "cartilaginous joint cranial sutures" EXACT [OBOL:automatic] synonym: "cartilaginous joint cranial sutures set" EXACT [OBOL:automatic] synonym: "cartilaginous joint cranium suture" EXACT [OBOL:automatic] synonym: "cartilaginous joint suture of cranium" EXACT [OBOL:automatic] synonym: "cranial suture of articulatio cartilaginea" EXACT [OBOL:automatic] synonym: "cranial suture of cartilaginous joint" EXACT [OBOL:automatic] synonym: "cranial sutures of articulatio cartilaginea" EXACT [OBOL:automatic] synonym: "cranial sutures of cartilaginous joint" EXACT [OBOL:automatic] synonym: "cranial sutures set of articulatio cartilaginea" EXACT [OBOL:automatic] synonym: "cranial sutures set of cartilaginous joint" EXACT [OBOL:automatic] synonym: "cranium suture of articulatio cartilaginea" EXACT [OBOL:automatic] synonym: "cranium suture of cartilaginous joint" EXACT [OBOL:automatic] synonym: "suture of cranium of articulatio cartilaginea" EXACT [OBOL:automatic] synonym: "suture of cranium of cartilaginous joint" EXACT [OBOL:automatic] xref: MA:0001498 is_a: UBERON:0003685 ! implied link automatically realized ! cranial suture relationship: part_of UBERON:0002213 intersection_of: UBERON:0003685 ! cranial suture intersection_of: part_of UBERON:0002213 ! cartilaginous joint [Term] id: UBERON:0004274 name: lateral ventricle choroid plexus epithelium def: "A choroid plexus epithelium that is part of a lateral ventricle [Obol]." [OBOL:automatic] synonym: "chorioid plexus of cerebral hemisphere epithelial tissue of lateral ventricle" EXACT [OBOL:automatic] synonym: "chorioid plexus of cerebral hemisphere epithelium of lateral ventricle" EXACT [OBOL:automatic] synonym: "choroid plexus epithelial tissue of lateral ventricle" EXACT [OBOL:automatic] synonym: "choroid plexus epithelium of lateral ventricle" EXACT [OBOL:automatic] synonym: "epithelial tissue of chorioid plexus of cerebral hemisphere of lateral ventricle" EXACT [OBOL:automatic] synonym: "epithelial tissue of choroid plexus of lateral ventricle" EXACT [OBOL:automatic] synonym: "epithelium of chorioid plexus of cerebral hemisphere of lateral ventricle" EXACT [OBOL:automatic] synonym: "epithelium of choroid plexus of lateral ventricle" EXACT [OBOL:automatic] synonym: "lateral ventricle chorioid plexus of cerebral hemisphere epithelial tissue" EXACT [OBOL:automatic] synonym: "lateral ventricle chorioid plexus of cerebral hemisphere epithelium" EXACT [OBOL:automatic] synonym: "lateral ventricle choroid plexus epithelial tissue" EXACT [OBOL:automatic] synonym: "lateral ventricle epithelial tissue of chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic] synonym: "lateral ventricle epithelial tissue of choroid plexus" EXACT [OBOL:automatic] synonym: "lateral ventricle epithelium of chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic] synonym: "lateral ventricle epithelium of choroid plexus" EXACT [OBOL:automatic] xref: FMA:242815 xref: MA:0000962 xref: ncithesaurus:Choroid_Plexus_Epithelium_of_the_Lateral_Ventricle is_a: UBERON:0003911 ! implied link automatically realized ! choroid plexus epithelium is_a: UBERON:0004643 ! implied link automatically realized ! lateral ventricle ependyma relationship: part_of UBERON:0002307 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002307 ! choroid plexus of lateral ventricle [Term] id: UBERON:0004275 name: third ventricle choroid plexus epithelium def: "A choroid plexus epithelium that is part of a third ventricle [Obol]." [OBOL:automatic] synonym: "chorioid plexus of cerebral hemisphere epithelial tissue of third ventricle" EXACT [OBOL:automatic] synonym: "chorioid plexus of cerebral hemisphere epithelium of third ventricle" EXACT [OBOL:automatic] synonym: "choroid plexus epithelial tissue of third ventricle" EXACT [OBOL:automatic] synonym: "choroid plexus epithelium of third ventricle" EXACT [OBOL:automatic] synonym: "epithelial tissue of chorioid plexus of cerebral hemisphere of third ventricle" EXACT [OBOL:automatic] synonym: "epithelial tissue of choroid plexus of third ventricle" EXACT [OBOL:automatic] synonym: "epithelium of chorioid plexus of cerebral hemisphere of third ventricle" EXACT [OBOL:automatic] synonym: "epithelium of choroid plexus of third ventricle" EXACT [OBOL:automatic] synonym: "third ventricle chorioid plexus of cerebral hemisphere epithelial tissue" EXACT [OBOL:automatic] synonym: "third ventricle chorioid plexus of cerebral hemisphere epithelium" EXACT [OBOL:automatic] synonym: "third ventricle choroid plexus epithelial tissue" EXACT [OBOL:automatic] synonym: "third ventricle epithelial tissue of chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic] synonym: "third ventricle epithelial tissue of choroid plexus" EXACT [OBOL:automatic] synonym: "third ventricle epithelium of chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic] synonym: "third ventricle epithelium of choroid plexus" EXACT [OBOL:automatic] xref: FMA:242821 xref: MA:0000880 is_a: UBERON:0003911 ! implied link automatically realized ! choroid plexus epithelium is_a: UBERON:0004642 ! implied link automatically realized ! third ventricle ependyma relationship: part_of UBERON:0002286 intersection_of: UBERON:0003911 ! choroid plexus epithelium intersection_of: part_of UBERON:0002286 ! third ventricle relationship: part_of UBERON:0002288 ! choroid plexus of third ventricle [Term] id: UBERON:0004276 name: fourth ventricle choroid plexus epithelium def: "A choroid plexus epithelium that is part of a fourth ventricle [Obol]." [OBOL:automatic] synonym: "chorioid plexus of cerebral hemisphere epithelial tissue of fourth ventricle" EXACT [OBOL:automatic] synonym: "chorioid plexus of cerebral hemisphere epithelium of fourth ventricle" EXACT [OBOL:automatic] synonym: "choroid plexus epithelial tissue of fourth ventricle" EXACT [OBOL:automatic] synonym: "choroid plexus epithelium of fourth ventricle" EXACT [OBOL:automatic] synonym: "epithelial tissue of chorioid plexus of cerebral hemisphere of fourth ventricle" EXACT [OBOL:automatic] synonym: "epithelial tissue of choroid plexus of fourth ventricle" EXACT [OBOL:automatic] synonym: "epithelium of chorioid plexus of cerebral hemisphere of fourth ventricle" EXACT [OBOL:automatic] synonym: "epithelium of choroid plexus of fourth ventricle" EXACT [OBOL:automatic] synonym: "fourth ventricle chorioid plexus of cerebral hemisphere epithelial tissue" EXACT [OBOL:automatic] synonym: "fourth ventricle chorioid plexus of cerebral hemisphere epithelium" EXACT [OBOL:automatic] synonym: "fourth ventricle choroid plexus epithelial tissue" EXACT [OBOL:automatic] synonym: "fourth ventricle epithelial tissue of chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic] synonym: "fourth ventricle epithelial tissue of choroid plexus" EXACT [OBOL:automatic] synonym: "fourth ventricle epithelium of chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic] synonym: "fourth ventricle epithelium of choroid plexus" EXACT [OBOL:automatic] xref: FMA:242823 xref: MA:0000984 xref: ncithesaurus:Choroid_Plexus_Epithelium_of_the_Fourth_Ventricle is_a: UBERON:0002946 ! implied link automatically realized ! regional part of cerebellum is_a: UBERON:0003911 ! implied link automatically realized ! choroid plexus epithelium is_a: UBERON:0004644 ! implied link automatically realized ! fourth ventricle ependyma relationship: part_of UBERON:0002422 intersection_of: UBERON:0003911 ! choroid plexus epithelium intersection_of: part_of UBERON:0002422 ! fourth ventricle relationship: part_of UBERON:0002290 ! choroid plexus of fourth ventricle [Term] id: UBERON:0004277 name: eye muscle def: "A muscle that is part of the ocular region." [OBOL:automatic] xref: AAO:0000156 xref: MA:0000271 xref: OpenCyc:Mx8Ngx4rwKSh9pwpEbGdrcN5Y29ycB4rvViTvpwpEbGdrcN5Y29ycB4rvYA8cJwpEbGdrcN5Y29ycA is_a: UBERON:0001577 ! implied link automatically realized ! muscle of face relationship: part_of UBERON:0004088 intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0004088 ! ocular region [Term] id: UBERON:0004288 name: skeleton def: "all the bones and/or cartilaginous elements in the body. With the articular system, this comprises the skeletal system." [FMA:23875, UBERON:cjm, Wikipedia:Skeleton] comment: Note that the source FMA definition has been modified here to include cartilage skeletons. We may wish to introduce subclasses for bony/cartilage skeletons. subset: uberon_slim synonym: "set of all bones" EXACT [] synonym: "set of bones of body" EXACT [] xref: AEO:0000168 xref: EFO:0000806 xref: EHDAA:5047 xref: EHDAA:8005 xref: EHDAA:8041 xref: EHDAA2:0001843 xref: FMA:23875 xref: GAID:177 xref: galen:Skeleton xref: MA:0003006 xref: MAT:0000032 xref: MESH:A.02.835 xref: MIAA:0000032 xref: OpenCyc:Mx4rvVi1rpwpEbGdrcN5Y29ycA xref: SCTID:361378004 xref: VAO:0000026 xref: XAO:0004053 is_a: UBERON:0000480 ! anatomical group is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001434 ! skeletal system [Term] id: UBERON:0004289 name: radula def: "an anatomical structure found in mollusks and used for feeding. It is a minutely toothed, chitinous ribbon. It is typically used for scraping or cutting food before the food enters the esophagus. The radula is unique to the molluscs, and is found in all classes of mollusks except for the bivalves." [Wikipedia:Radula] comment: The first bona fide radula dates to the Early Cambrian,[3] although trace fossils from the earlier Ediacaran have been suggested to have been made by the radula of the organism Kimberella.[WP] xref: BTO:0001506 is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0004290 name: dermomyotome def: "The bilaminar epithelium formed from the myotome and dermatome[AEO:JB]. Epithelial sheet on the external surface of the somite that gives rise to trunk, muscle and dermis. Within the dermomyotome there is also a medio-lateral difference. The central region makes dermis, the mesenchymal connective tissue of the back skin. The medial region (closest to neural tube) makes epaxial muscle, and the lateral region (furthest from neural tube) makes hypaxial muscle." [http://www.ncbi.nlm.nih.gov/bookshelf/br.fcgi?book=eurekah&part=A66768, ZFA:0001513] xref: AAO:0010572 xref: EHDAA2:0003259 xref: ncithesaurus:Dermomyotome xref: OG:0000676 xref: ZFA:0001513 is_a: UBERON:0000486 {source="EHDAA2"} ! multilaminar epithelium is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue relationship: develops_from UBERON:0002329 {source="ZFA"} ! somite relationship: part_of UBERON:0000926 ! mesoderm [Term] id: UBERON:0004291 name: heart rudiment def: "a cone-like structure that is formed when myocardial progenitor cells of the heart field fuse at the midline. The heart rudiment is the first structure of the heart tube." [GO:0003313] synonym: "heart cone" EXACT [GO:0003313] synonym: "rudimentary heart" EXACT [ZFA:0000115] xref: ZFA:0000115 is_a: UBERON:0000483 ! epithelium is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: develops_from UBERON:0003084 {source="ZFA"} ! heart primordium relationship: develops_from UBERON:0004139 ! cardiogenic plate [Term] id: UBERON:0004292 name: cardiac skeleton def: "a specialized extracellular matrix that separates the atria from the ventricles and provides physical support for the heart[GO]. structure of dense connective tissue in the heart that separates the atria from the ventricles. It is not a true skeleton, but it does provide structure and support for the heart, as well as isolating the atria from the ventricles. This allows the AV node and AV bundle to delay the wave of depolarisation such that the atria can contract and assist in ventricular filling before the ventricles themselves depolarise and contract (the AV bundle is the only part of the conduction system that passes from the atria to the ventricles in a normal heart). It also allows the valves (bicuspid, tricuspid, semilunar) to keep open by giving them structural support." [Wikipedia:Cardiac_skeleton] synonym: "cardiac fibrous skeleton" EXACT [] synonym: "fibrous skeleton of heart" EXACT [] synonym: "heart fibrous skeleton" EXACT [] synonym: "skeleton of heart" EXACT [FMA:9496] xref: FMA:9496 is_a: UBERON:0002384 ! connective tissue is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0000948 ! heart [Term] id: UBERON:0004293 name: parasympathetic nerve def: "A nerve that is part of a parasympathetic nervous system [Obol]." [OBOL:automatic] synonym: "nerve of parasympathetic nervous system" EXACT [OBOL:automatic] xref: AAO:0010488 xref: EHDAA2:0001401 xref: EMAPA:17271 xref: MA:0000224 xref: OG:0000641 xref: SCTID:276146002 is_a: UBERON:0001021 ! implied link automatically realized ! nerve relationship: part_of UBERON:0000011 intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0000011 ! parasympathetic nervous system [Term] id: UBERON:0004294 name: glomerular capillary endothelium synonym: "renal glomerulus capillary endothelium" EXACT [OBOL:automatic] xref: MA:0001658 xref: ncithesaurus:Endothelium_of_the_Glomerular_Capillary xref: SCTID:243993006 is_a: UBERON:0001915 ! implied link automatically realized ! endothelium of capillary is_a: UBERON:0004189 ! implied link automatically realized ! glomerular endothelium is_a: UBERON:0004810 ! implied link automatically realized ! nephron tubule epithelium relationship: part_of UBERON:0004212 intersection_of: UBERON:0001986 ! endothelium intersection_of: part_of UBERON:0004212 ! glomerular capillary [Term] id: UBERON:0004295 name: sympathetic nerve trunk def: "A nerve trunk that is part of a sympathetic nervous system [Obol]." [OBOL:automatic] synonym: "nerve trunk of sympathetic nervous system" EXACT [OBOL:automatic] synonym: "nerve trunk of sympathetic part of autonomic division of nervous system" EXACT [OBOL:automatic] synonym: "sympathetic nervous system nerve trunk" EXACT [OBOL:automatic] xref: EHDAA2:0001970 xref: EMAPA:16986 xref: MA:0000227 is_a: UBERON:0002464 ! implied link automatically realized ! nerve trunk relationship: part_of UBERON:0000013 intersection_of: UBERON:0002464 ! nerve trunk intersection_of: part_of UBERON:0000013 ! sympathetic nervous system [Term] id: UBERON:0004296 name: respiratory system lymphatic vessel smooth muscle def: "A lymphatic vessel smooth muscle that is part of a respiratory system [Obol]." [OBOL:automatic] synonym: "smooth muscle of lymph vessel of respiratory system" EXACT [OBOL:automatic] xref: MA:0001826 is_a: UBERON:0004225 ! implied link automatically realized ! respiratory system smooth muscle is_a: UBERON:0004232 ! implied link automatically realized ! lymphatic vessel smooth muscle relationship: part_of UBERON:0003456 intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0003456 ! respiratory system lymphatic vessel relationship: part_of UBERON:0003456 ! respiratory system lymphatic vessel [Term] id: UBERON:0004297 name: respiratory system blood vessel smooth muscle def: "A blood vessel smooth muscle that is part of a respiratory system [Obol]." [OBOL:automatic] synonym: "smooth muscle tissue of blood vessel of respiratory system" EXACT [OBOL:automatic] xref: MA:0001806 is_a: UBERON:0004225 ! implied link automatically realized ! respiratory system smooth muscle is_a: UBERON:0004237 ! implied link automatically realized ! blood vessel smooth muscle relationship: part_of UBERON:0003504 intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0003504 ! respiratory system blood vessel [Term] id: UBERON:0004300 name: distal phalanx def: "Terminal phalanx located at the tip of the digits." [Wikipedia:Distal_phalanges] synonym: "terminal phalanx" EXACT [AAO:0010676] synonym: "ungual phalanx" EXACT [http://www.medilexicon.com/medicaldictionary.php?t=67679] xref: AAO:0010676 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ab/Scheme_human_hand_bones-en.svg/200px-Scheme_human_hand_bones-en.svg.png xref: MA:0002914 xref: SCTID:299711006 is_a: UBERON:0003221 ! implied link automatically realized ! phalanx relationship: part_of UBERON:0009551 intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0009551 ! distal segment of digit [Term] id: UBERON:0004301 name: middle phalanx def: "A phalanx located between proximal and distal phalanges[CJM]. Intermediate phalanges are bones found in the limbs of most vertebrates. In humans, they are the bones of the finger and toe which lie in the middle, between the two wrinkly joints. The thumb and big toe do not have intermediate phalanges. In most other vertebrates, they have a corresponding place in their limbs, whether they be paw, wing, hoof or fin[WP]." [Wikipedia:Intermediate_phalanges] synonym: "intermediate phalanx" EXACT [] xref: MA:0002915 xref: SCTID:299710007 is_a: UBERON:0003221 ! phalanx relationship: distal_to UBERON:0004302 ! proximal phalanx relationship: proximal_to UBERON:0004300 ! distal phalanx [Term] id: UBERON:0004302 name: proximal phalanx def: "Proximal-most phalanx within a digit[CJM]. Proximal phalanges are bones found in the limbs of most vertebrates. In humans, they are the bones at the base of a toe or finger, the prominent, knobby ends of which are often called the knuckles. In other vertebrates, proximal phalanges have a similar placement in the corresponding limbs, be they paw, wing or fin. In many species, they are the longest and thickest phalanx ('finger' bone)." [Wikipedia:Proximal_phalanges] xref: MA:0002916 xref: SCTID:299708005 is_a: UBERON:0003221 ! phalanx [Term] id: UBERON:0004311 name: distal phalanx of hand digit 2 def: "A distal phalanx that is part of a hand digit 2 [Obol]." [OBOL:automatic] synonym: "2nd digit of hand distal phalanx" EXACT [OBOL:automatic] synonym: "2nd finger distal phalanx" EXACT [OBOL:automatic] synonym: "distal phalanx of 2nd digit of hand" EXACT [OBOL:automatic] synonym: "distal phalanx of 2nd finger" EXACT [OBOL:automatic] synonym: "distal phalanx of index finger" EXACT [FMA:23946] synonym: "distal phalanx of second digit of hand" EXACT [FMA:23946] synonym: "distal phalanx of second finger" EXACT [OBOL:automatic] synonym: "hand digit 2 distal phalanx" EXACT [OBOL:automatic] synonym: "second distal phalanx of hand" EXACT [FMA:23946] synonym: "second finger distal phalanx" EXACT [OBOL:automatic] xref: FMA:23946 xref: SCTID:361784003 is_a: UBERON:0003636 ! implied link automatically realized ! hand digit 2 phalanx is_a: UBERON:0003865 ! implied link automatically realized ! distal phalanx of finger relationship: part_of UBERON:0003622 intersection_of: UBERON:0004300 ! distal phalanx intersection_of: part_of UBERON:0003622 ! hand digit 2 [Term] id: UBERON:0004312 name: distal phalanx of hand digit 3 def: "A distal phalanx that is part of a hand digit 3 [Obol]." [OBOL:automatic] synonym: "3rd digit of hand distal phalanx" EXACT [OBOL:automatic] synonym: "3rd finger distal phalanx" EXACT [OBOL:automatic] synonym: "distal phalanx of 3rd digit of hand" EXACT [OBOL:automatic] synonym: "distal phalanx of 3rd finger" EXACT [OBOL:automatic] synonym: "distal phalanx of middle finger" EXACT [FMA:23947] synonym: "distal phalanx of third digit of hand" EXACT [FMA:23947] synonym: "distal phalanx of third finger" EXACT [OBOL:automatic] synonym: "hand digit 3 distal phalanx" EXACT [OBOL:automatic] synonym: "third distal phalanx of hand" EXACT [FMA:23947] synonym: "third finger distal phalanx" EXACT [OBOL:automatic] xref: FMA:23947 xref: SCTID:361786001 is_a: UBERON:0003637 ! implied link automatically realized ! hand digit 3 phalanx is_a: UBERON:0003865 ! implied link automatically realized ! distal phalanx of finger relationship: part_of UBERON:0003623 intersection_of: UBERON:0004300 ! distal phalanx intersection_of: part_of UBERON:0003623 ! hand digit 3 [Term] id: UBERON:0004313 name: distal phalanx of hand digit 4 def: "A distal phalanx that is part of a hand digit 4 [Obol]." [OBOL:automatic] synonym: "4th digit of hand distal phalanx" EXACT [OBOL:automatic] synonym: "4th finger distal phalanx" EXACT [OBOL:automatic] synonym: "distal phalanx of 4th digit of hand" EXACT [OBOL:automatic] synonym: "distal phalanx of 4th finger" EXACT [OBOL:automatic] synonym: "distal phalanx of fourth digit of hand" EXACT [FMA:23948] synonym: "distal phalanx of fourth finger" EXACT [OBOL:automatic] synonym: "distal phalanx of ring finger" EXACT [FMA:23948] synonym: "fourth distal phalanx of hand" EXACT [FMA:23948] synonym: "fourth finger distal phalanx" EXACT [OBOL:automatic] synonym: "hand digit 4 distal phalanx" EXACT [OBOL:automatic] xref: FMA:23948 xref: SCTID:361788000 is_a: UBERON:0003638 ! implied link automatically realized ! hand digit 4 phalanx is_a: UBERON:0003865 ! implied link automatically realized ! distal phalanx of finger relationship: part_of UBERON:0003624 intersection_of: UBERON:0004300 ! distal phalanx intersection_of: part_of UBERON:0003624 ! hand digit 4 [Term] id: UBERON:0004314 name: distal phalanx of hand digit 5 def: "A distal phalanx that is part of a hand digit 5 [Obol]." [OBOL:automatic] synonym: "5th digit of hand distal phalanx" EXACT [OBOL:automatic] synonym: "5th finger distal phalanx" EXACT [OBOL:automatic] synonym: "distal phalanx of 5th digit of hand" EXACT [OBOL:automatic] synonym: "distal phalanx of 5th finger" EXACT [OBOL:automatic] synonym: "distal phalanx of fifth digit of hand" EXACT [FMA:23949] synonym: "distal phalanx of fifth finger" EXACT [OBOL:automatic] synonym: "distal phalanx of little finger" EXACT [FMA:23949] synonym: "fifth distal phalanx of hand" EXACT [FMA:23949] synonym: "fifth finger distal phalanx" EXACT [OBOL:automatic] synonym: "hand digit 5 distal phalanx" EXACT [OBOL:automatic] xref: FMA:23949 xref: SCTID:361790004 is_a: UBERON:0003639 ! implied link automatically realized ! hand digit 5 phalanx is_a: UBERON:0003865 ! implied link automatically realized ! distal phalanx of finger relationship: part_of UBERON:0003625 intersection_of: UBERON:0004300 ! distal phalanx intersection_of: part_of UBERON:0003625 ! hand digit 5 [Term] id: UBERON:0004315 name: distal phalanx of foot digit 1 def: "A distal phalanx that is part of a foot digit 1 [Obol]." [OBOL:automatic] synonym: "distal phalanx of big toe" EXACT [FMA:32627] synonym: "distal phalanx of first digit of foot" EXACT [FMA:32627] synonym: "distal phalanx of foot digit 1" EXACT [OBOL:automatic] synonym: "distal phalanx of great toe" EXACT [FMA:32627] synonym: "distal phalanx of hallux" EXACT [OBOL:automatic] synonym: "first distal phalanx of foot" EXACT [FMA:32627] synonym: "foot digit 1 distal phalanx" EXACT [OBOL:automatic] synonym: "hallux distal phalanx" EXACT [OBOL:automatic] xref: FMA:32627 xref: SCTID:361799003 is_a: UBERON:0003640 ! implied link automatically realized ! foot digit 1 phalanx is_a: UBERON:0003867 ! implied link automatically realized ! distal phalanx of toe relationship: part_of UBERON:0003631 intersection_of: UBERON:0004300 ! distal phalanx intersection_of: part_of UBERON:0003631 ! foot digit 1 [Term] id: UBERON:0004316 name: distal phalanx of foot digit 2 def: "A distal phalanx that is part of a foot digit 2 [Obol]." [OBOL:automatic] synonym: "2nd toe distal phalanx" EXACT [OBOL:automatic] synonym: "distal phalanx of 2nd toe" EXACT [OBOL:automatic] synonym: "distal phalanx of foot digit 2" EXACT [OBOL:automatic] synonym: "distal phalanx of second digit of foot" EXACT [FMA:32628] synonym: "distal phalanx of second toe" EXACT [FMA:32628] synonym: "foot digit 2 distal phalanx" EXACT [OBOL:automatic] synonym: "second distal phalanx of foot" EXACT [FMA:32628] xref: FMA:32628 xref: SCTID:361801000 is_a: UBERON:0003641 ! implied link automatically realized ! foot digit 2 phalanx is_a: UBERON:0003867 ! implied link automatically realized ! distal phalanx of toe relationship: part_of UBERON:0003632 intersection_of: UBERON:0004300 ! distal phalanx intersection_of: part_of UBERON:0003632 ! foot digit 2 [Term] id: UBERON:0004317 name: distal phalanx of foot digit 3 def: "A distal phalanx that is part of a foot digit 3 [Obol]." [OBOL:automatic] synonym: "3rd toe distal phalanx" EXACT [OBOL:automatic] synonym: "distal phalanx of 3rd toe" EXACT [OBOL:automatic] synonym: "distal phalanx of foot digit 3" EXACT [OBOL:automatic] synonym: "distal phalanx of third digit of foot" EXACT [FMA:32629] synonym: "distal phalanx of third toe" EXACT [FMA:32629] synonym: "foot digit 3 distal phalanx" EXACT [OBOL:automatic] synonym: "third distal phalanx of foot" EXACT [FMA:32629] xref: FMA:32629 xref: SCTID:361803002 is_a: UBERON:0003642 ! implied link automatically realized ! foot digit 3 phalanx is_a: UBERON:0003867 ! implied link automatically realized ! distal phalanx of toe relationship: part_of UBERON:0003633 intersection_of: UBERON:0004300 ! distal phalanx intersection_of: part_of UBERON:0003633 ! foot digit 3 [Term] id: UBERON:0004318 name: distal phalanx of foot digit 4 def: "A distal phalanx that is part of a foot digit 4 [Obol]." [OBOL:automatic] synonym: "4th toe distal phalanx" EXACT [OBOL:automatic] synonym: "distal phalanx of 4th toe" EXACT [OBOL:automatic] synonym: "distal phalanx of foot digit 4" EXACT [OBOL:automatic] synonym: "distal phalanx of fourth digit of foot" EXACT [FMA:32630] synonym: "distal phalanx of fourth toe" EXACT [FMA:32630] synonym: "foot digit 4 distal phalanx" EXACT [OBOL:automatic] synonym: "fourth distal phalanx of foot" EXACT [FMA:32630] xref: FMA:32630 xref: SCTID:361805009 is_a: UBERON:0003862 ! implied link automatically realized ! foot digit 4 phalanx is_a: UBERON:0003867 ! implied link automatically realized ! distal phalanx of toe relationship: part_of UBERON:0003634 intersection_of: UBERON:0004300 ! distal phalanx intersection_of: part_of UBERON:0003634 ! foot digit 4 [Term] id: UBERON:0004319 name: distal phalanx of foot digit 5 def: "A distal phalanx that is part of a foot digit 5 [Obol]." [OBOL:automatic] synonym: "5th toe distal phalanx" EXACT [OBOL:automatic] synonym: "distal phalanx of 5th toe" EXACT [OBOL:automatic] synonym: "distal phalanx of fifth digit of foot" EXACT [FMA:32631] synonym: "distal phalanx of fifth toe" EXACT [FMA:32631] synonym: "distal phalanx of foot digit 5" EXACT [OBOL:automatic] synonym: "distal phalanx of little toe" EXACT [FMA:32631] synonym: "fifth distal phalanx of foot" EXACT [FMA:32631] synonym: "foot digit 5 distal phalanx" EXACT [OBOL:automatic] xref: FMA:32631 xref: SCTID:10770001 is_a: UBERON:0003863 ! implied link automatically realized ! foot digit 5 phalanx is_a: UBERON:0003867 ! implied link automatically realized ! distal phalanx of toe relationship: part_of UBERON:0003635 intersection_of: UBERON:0004300 ! distal phalanx intersection_of: part_of UBERON:0003635 ! foot digit 5 [Term] id: UBERON:0004320 name: middle phalanx of hand digit 2 def: "A middle phalanx that is part of a hand digit 2 [Obol]." [OBOL:automatic] synonym: "2nd digit of hand intermediate phalanx" EXACT [OBOL:automatic] synonym: "2nd digit of hand middle phalanx" EXACT [OBOL:automatic] synonym: "2nd finger intermediate phalanx" EXACT [OBOL:automatic] synonym: "2nd finger middle phalanx" EXACT [OBOL:automatic] synonym: "hand digit 2 intermediate phalanx" EXACT [OBOL:automatic] synonym: "hand digit 2 middle phalanx" EXACT [OBOL:automatic] synonym: "intermediate phalanx of 2nd digit of hand" EXACT [OBOL:automatic] synonym: "intermediate phalanx of 2nd finger" EXACT [OBOL:automatic] synonym: "intermediate phalanx of hand digit 2" EXACT [OBOL:automatic] synonym: "intermediate phalanx of second finger" EXACT [OBOL:automatic] synonym: "middle phalanx of 2nd digit of hand" EXACT [OBOL:automatic] synonym: "middle phalanx of 2nd finger" EXACT [OBOL:automatic] synonym: "middle phalanx of index finger" EXACT [FMA:23933] synonym: "middle phalanx of second digit of hand" EXACT [FMA:23933] synonym: "middle phalanx of second finger" EXACT [OBOL:automatic] synonym: "second finger intermediate phalanx" EXACT [OBOL:automatic] synonym: "second finger middle phalanx" EXACT [OBOL:automatic] synonym: "second middle phalanx of hand" EXACT [FMA:23933] xref: FMA:23933 xref: SCTID:263407002 is_a: UBERON:0003636 ! implied link automatically realized ! hand digit 2 phalanx is_a: UBERON:0003864 ! implied link automatically realized ! middle phalanx of finger relationship: part_of UBERON:0003622 intersection_of: UBERON:0004301 ! middle phalanx intersection_of: part_of UBERON:0003622 ! hand digit 2 [Term] id: UBERON:0004321 name: middle phalanx of hand digit 3 def: "A middle phalanx that is part of a hand digit 3 [Obol]." [OBOL:automatic] synonym: "3rd digit of hand intermediate phalanx" EXACT [OBOL:automatic] synonym: "3rd digit of hand middle phalanx" EXACT [OBOL:automatic] synonym: "3rd finger intermediate phalanx" EXACT [OBOL:automatic] synonym: "3rd finger middle phalanx" EXACT [OBOL:automatic] synonym: "hand digit 3 intermediate phalanx" EXACT [OBOL:automatic] synonym: "hand digit 3 middle phalanx" EXACT [OBOL:automatic] synonym: "intermediate phalanx of 3rd digit of hand" EXACT [OBOL:automatic] synonym: "intermediate phalanx of 3rd finger" EXACT [OBOL:automatic] synonym: "intermediate phalanx of hand digit 3" EXACT [OBOL:automatic] synonym: "intermediate phalanx of third finger" EXACT [OBOL:automatic] synonym: "middle phalanx of 3rd digit of hand" EXACT [OBOL:automatic] synonym: "middle phalanx of 3rd finger" EXACT [OBOL:automatic] synonym: "middle phalanx of middle finger" EXACT [OBOL:automatic] synonym: "middle phalanx of third digit of hand" EXACT [FMA:23934] synonym: "middle phalanx of third finger" EXACT [OBOL:automatic] synonym: "third finger intermediate phalanx" EXACT [OBOL:automatic] synonym: "third finger middle phalanx" EXACT [OBOL:automatic] synonym: "third middle phalanx of hand" EXACT [FMA:23934] xref: FMA:23934 xref: SCTID:263408007 is_a: UBERON:0003637 ! implied link automatically realized ! hand digit 3 phalanx is_a: UBERON:0003864 ! implied link automatically realized ! middle phalanx of finger relationship: part_of UBERON:0003623 intersection_of: UBERON:0004301 ! middle phalanx intersection_of: part_of UBERON:0003623 ! hand digit 3 [Term] id: UBERON:0004322 name: middle phalanx of hand digit 4 def: "A middle phalanx that is part of a hand digit 4 [Obol]." [OBOL:automatic] synonym: "4th digit of hand intermediate phalanx" EXACT [OBOL:automatic] synonym: "4th digit of hand middle phalanx" EXACT [OBOL:automatic] synonym: "4th finger intermediate phalanx" EXACT [OBOL:automatic] synonym: "4th finger middle phalanx" EXACT [OBOL:automatic] synonym: "fourth finger intermediate phalanx" EXACT [OBOL:automatic] synonym: "fourth finger middle phalanx" EXACT [OBOL:automatic] synonym: "fourth middle phalanx of hand" EXACT [FMA:23935] synonym: "hand digit 4 intermediate phalanx" EXACT [OBOL:automatic] synonym: "hand digit 4 middle phalanx" EXACT [OBOL:automatic] synonym: "intermediate phalanx of 4th digit of hand" EXACT [OBOL:automatic] synonym: "intermediate phalanx of 4th finger" EXACT [OBOL:automatic] synonym: "intermediate phalanx of fourth finger" EXACT [OBOL:automatic] synonym: "intermediate phalanx of hand digit 4" EXACT [OBOL:automatic] synonym: "middle phalanx of 4th digit of hand" EXACT [OBOL:automatic] synonym: "middle phalanx of 4th finger" EXACT [OBOL:automatic] synonym: "middle phalanx of fourth digit of hand" EXACT [FMA:23935] synonym: "middle phalanx of fourth finger" EXACT [OBOL:automatic] synonym: "middle phalanx of ring finger" EXACT [OBOL:automatic] xref: FMA:23935 xref: SCTID:263409004 is_a: UBERON:0003638 ! implied link automatically realized ! hand digit 4 phalanx is_a: UBERON:0003864 ! implied link automatically realized ! middle phalanx of finger relationship: part_of UBERON:0003624 intersection_of: UBERON:0004301 ! middle phalanx intersection_of: part_of UBERON:0003624 ! hand digit 4 [Term] id: UBERON:0004323 name: middle phalanx of hand digit 5 def: "A middle phalanx that is part of a hand digit 5 [Obol]." [OBOL:automatic] synonym: "5th digit of hand intermediate phalanx" EXACT [OBOL:automatic] synonym: "5th digit of hand middle phalanx" EXACT [OBOL:automatic] synonym: "5th finger intermediate phalanx" EXACT [OBOL:automatic] synonym: "5th finger middle phalanx" EXACT [OBOL:automatic] synonym: "fifth finger intermediate phalanx" EXACT [OBOL:automatic] synonym: "fifth finger middle phalanx" EXACT [OBOL:automatic] synonym: "fifth middle phalanx of hand" EXACT [FMA:23936] synonym: "hand digit 5 intermediate phalanx" EXACT [OBOL:automatic] synonym: "hand digit 5 middle phalanx" EXACT [OBOL:automatic] synonym: "intermediate phalanx of 5th digit of hand" EXACT [OBOL:automatic] synonym: "intermediate phalanx of 5th finger" EXACT [OBOL:automatic] synonym: "intermediate phalanx of fifth finger" EXACT [OBOL:automatic] synonym: "intermediate phalanx of hand digit 5" EXACT [OBOL:automatic] synonym: "middle phalanx of 5th digit of hand" EXACT [OBOL:automatic] synonym: "middle phalanx of 5th finger" EXACT [OBOL:automatic] synonym: "middle phalanx of fifth digit of hand" EXACT [FMA:23936] synonym: "middle phalanx of fifth finger" EXACT [OBOL:automatic] synonym: "middle phalanx of little finger" EXACT [OBOL:automatic] xref: FMA:23936 xref: SCTID:263410009 is_a: UBERON:0003639 ! implied link automatically realized ! hand digit 5 phalanx is_a: UBERON:0003864 ! implied link automatically realized ! middle phalanx of finger relationship: part_of UBERON:0003625 intersection_of: UBERON:0004301 ! middle phalanx intersection_of: part_of UBERON:0003625 ! hand digit 5 [Term] id: UBERON:0004324 name: middle phalanx of foot digit 2 def: "A middle phalanx that is part of a foot digit 2 [Obol]." [OBOL:automatic] synonym: "2nd toe intermediate phalanx" EXACT [OBOL:automatic] synonym: "2nd toe middle phalanx" EXACT [OBOL:automatic] synonym: "foot digit 2 intermediate phalanx" EXACT [OBOL:automatic] synonym: "foot digit 2 middle phalanx" EXACT [OBOL:automatic] synonym: "intermediate phalanx of 2nd toe" EXACT [OBOL:automatic] synonym: "intermediate phalanx of foot digit 2" EXACT [OBOL:automatic] synonym: "middle phalanx of 2nd toe" EXACT [OBOL:automatic] synonym: "middle phalanx of foot digit 2" EXACT [OBOL:automatic] synonym: "middle phalanx of second digit of foot" EXACT [FMA:32623] synonym: "middle phalanx of second toe" EXACT [FMA:32623] synonym: "second middle phalanx of foot" EXACT [FMA:32623] xref: FMA:32623 xref: SCTID:182152006 is_a: UBERON:0003641 ! implied link automatically realized ! foot digit 2 phalanx is_a: UBERON:0003866 ! implied link automatically realized ! middle phalanx of toe relationship: part_of UBERON:0003632 intersection_of: UBERON:0004301 ! middle phalanx intersection_of: part_of UBERON:0003632 ! foot digit 2 [Term] id: UBERON:0004325 name: middle phalanx of foot digit 3 def: "A middle phalanx that is part of a foot digit 3 [Obol]." [OBOL:automatic] synonym: "3rd toe intermediate phalanx" EXACT [OBOL:automatic] synonym: "3rd toe middle phalanx" EXACT [OBOL:automatic] synonym: "foot digit 3 intermediate phalanx" EXACT [OBOL:automatic] synonym: "foot digit 3 middle phalanx" EXACT [OBOL:automatic] synonym: "intermediate phalanx of 3rd toe" EXACT [OBOL:automatic] synonym: "intermediate phalanx of foot digit 3" EXACT [OBOL:automatic] synonym: "middle phalanx of 3rd toe" EXACT [OBOL:automatic] synonym: "middle phalanx of foot digit 3" EXACT [OBOL:automatic] synonym: "middle phalanx of third digit of foot" EXACT [FMA:32624] synonym: "middle phalanx of third toe" EXACT [FMA:32624] synonym: "third middle phalanx of foot" EXACT [FMA:32624] xref: FMA:32624 xref: SCTID:182154007 is_a: UBERON:0003642 ! implied link automatically realized ! foot digit 3 phalanx is_a: UBERON:0003866 ! implied link automatically realized ! middle phalanx of toe relationship: part_of UBERON:0003633 intersection_of: UBERON:0004301 ! middle phalanx intersection_of: part_of UBERON:0003633 ! foot digit 3 [Term] id: UBERON:0004326 name: middle phalanx of foot digit 4 def: "A middle phalanx that is part of a foot digit 4 [Obol]." [OBOL:automatic] synonym: "4th toe intermediate phalanx" EXACT [OBOL:automatic] synonym: "4th toe middle phalanx" EXACT [OBOL:automatic] synonym: "foot digit 4 intermediate phalanx" EXACT [OBOL:automatic] synonym: "foot digit 4 middle phalanx" EXACT [OBOL:automatic] synonym: "fourth middle phalanx of foot" EXACT [FMA:32625] synonym: "intermediate phalanx of 4th toe" EXACT [OBOL:automatic] synonym: "intermediate phalanx of foot digit 4" EXACT [OBOL:automatic] synonym: "middle phalanx of 4th toe" EXACT [OBOL:automatic] synonym: "middle phalanx of foot digit 4" EXACT [OBOL:automatic] synonym: "middle phalanx of fourth digit of foot" EXACT [FMA:32625] synonym: "middle phalanx of fourth toe" EXACT [OBOL:automatic] xref: FMA:32625 xref: SCTID:182156009 is_a: UBERON:0003862 ! implied link automatically realized ! foot digit 4 phalanx is_a: UBERON:0003866 ! implied link automatically realized ! middle phalanx of toe relationship: part_of UBERON:0003634 intersection_of: UBERON:0004301 ! middle phalanx intersection_of: part_of UBERON:0003634 ! foot digit 4 [Term] id: UBERON:0004327 name: middle phalanx of foot digit 5 def: "A middle phalanx that is part of a foot digit 5 [Obol]." [OBOL:automatic] synonym: "5th toe intermediate phalanx" EXACT [OBOL:automatic] synonym: "5th toe middle phalanx" EXACT [OBOL:automatic] synonym: "foot digit 5 intermediate phalanx" EXACT [OBOL:automatic] synonym: "foot digit 5 middle phalanx" EXACT [OBOL:automatic] synonym: "intermediate phalanx of 5th toe" EXACT [OBOL:automatic] synonym: "intermediate phalanx of foot digit 5" EXACT [OBOL:automatic] synonym: "middle phalanx of 5th toe" EXACT [OBOL:automatic] synonym: "middle phalanx of foot digit 5" EXACT [OBOL:automatic] synonym: "middle phalanx of little toe" EXACT [OBOL:automatic] xref: FMA:230984 xref: SCTID:182158005 is_a: UBERON:0003863 ! implied link automatically realized ! foot digit 5 phalanx is_a: UBERON:0003866 ! implied link automatically realized ! middle phalanx of toe relationship: part_of UBERON:0003635 intersection_of: UBERON:0004301 ! middle phalanx intersection_of: part_of UBERON:0003635 ! foot digit 5 [Term] id: UBERON:0004328 name: proximal phalanx of hand digit 2 def: "A proximal phalanx that is part of a hand digit 2 [Obol]." [OBOL:automatic] synonym: "2nd digit of hand proximal phalanx" EXACT [OBOL:automatic] synonym: "2nd finger proximal phalanx" EXACT [OBOL:automatic] synonym: "hand digit 2 proximal phalanx" EXACT [OBOL:automatic] synonym: "proximal phalanx of 2nd digit of hand" EXACT [OBOL:automatic] synonym: "proximal phalanx of 2nd finger" EXACT [OBOL:automatic] synonym: "proximal phalanx of index finger" EXACT [FMA:23919] synonym: "proximal phalanx of second digit of hand" EXACT [FMA:23919] synonym: "proximal phalanx of second finger" EXACT [OBOL:automatic] synonym: "second finger proximal phalanx" EXACT [OBOL:automatic] synonym: "second proximal phalanx of hand" EXACT [FMA:23919] xref: FMA:23919 xref: SCTID:263403003 is_a: UBERON:0002234 ! implied link automatically realized ! proximal phalanx of finger is_a: UBERON:0003636 ! implied link automatically realized ! hand digit 2 phalanx relationship: part_of UBERON:0003622 intersection_of: UBERON:0004302 ! proximal phalanx intersection_of: part_of UBERON:0003622 ! hand digit 2 [Term] id: UBERON:0004329 name: proximal phalanx of hand digit 3 def: "A proximal phalanx that is part of a hand digit 3 [Obol]." [OBOL:automatic] synonym: "3rd digit of hand proximal phalanx" EXACT [OBOL:automatic] synonym: "3rd finger proximal phalanx" EXACT [OBOL:automatic] synonym: "hand digit 3 proximal phalanx" EXACT [OBOL:automatic] synonym: "proximal phalanx of 3rd digit of hand" EXACT [OBOL:automatic] synonym: "proximal phalanx of 3rd finger" EXACT [OBOL:automatic] synonym: "proximal phalanx of middle finger" EXACT [FMA:23920] synonym: "proximal phalanx of third digit of hand" EXACT [FMA:23920] synonym: "proximal phalanx of third finger" EXACT [OBOL:automatic] synonym: "third finger proximal phalanx" EXACT [OBOL:automatic] synonym: "third proximal phalanx of hand" EXACT [FMA:23920] xref: FMA:23920 xref: SCTID:263404009 is_a: UBERON:0002234 ! implied link automatically realized ! proximal phalanx of finger is_a: UBERON:0003637 ! implied link automatically realized ! hand digit 3 phalanx relationship: part_of UBERON:0003623 intersection_of: UBERON:0004302 ! proximal phalanx intersection_of: part_of UBERON:0003623 ! hand digit 3 [Term] id: UBERON:0004330 name: proximal phalanx of hand digit 4 def: "A proximal phalanx that is part of a hand digit 4 [Obol]." [OBOL:automatic] synonym: "4th digit of hand proximal phalanx" EXACT [OBOL:automatic] synonym: "4th finger proximal phalanx" EXACT [OBOL:automatic] synonym: "fourth finger proximal phalanx" EXACT [OBOL:automatic] synonym: "fourth proximal phalanx of hand" EXACT [FMA:23921] synonym: "hand digit 4 proximal phalanx" EXACT [OBOL:automatic] synonym: "proximal phalanx of 4th digit of hand" EXACT [OBOL:automatic] synonym: "proximal phalanx of 4th finger" EXACT [OBOL:automatic] synonym: "proximal phalanx of fourth digit of hand" EXACT [FMA:23921] synonym: "proximal phalanx of fourth finger" EXACT [OBOL:automatic] synonym: "proximal phalanx of ring finger" EXACT [FMA:23921] xref: FMA:23921 xref: SCTID:263405005 is_a: UBERON:0002234 ! implied link automatically realized ! proximal phalanx of finger is_a: UBERON:0003638 ! implied link automatically realized ! hand digit 4 phalanx relationship: part_of UBERON:0003624 intersection_of: UBERON:0004302 ! proximal phalanx intersection_of: part_of UBERON:0003624 ! hand digit 4 [Term] id: UBERON:0004331 name: proximal phalanx of hand digit 5 def: "A proximal phalanx that is part of a hand digit 5 [Obol]." [OBOL:automatic] synonym: "5th digit of hand proximal phalanx" EXACT [OBOL:automatic] synonym: "5th finger proximal phalanx" EXACT [OBOL:automatic] synonym: "fifth finger proximal phalanx" EXACT [OBOL:automatic] synonym: "fifth proximal phalanx of hand" EXACT [FMA:23922] synonym: "hand digit 5 proximal phalanx" EXACT [OBOL:automatic] synonym: "proximal phalanx of 5th digit of hand" EXACT [OBOL:automatic] synonym: "proximal phalanx of 5th finger" EXACT [OBOL:automatic] synonym: "proximal phalanx of fifth digit of hand" EXACT [FMA:23922] synonym: "proximal phalanx of fifth finger" EXACT [OBOL:automatic] synonym: "proximal phalanx of little finger" EXACT [FMA:23922] xref: FMA:23922 xref: SCTID:263406006 is_a: UBERON:0002234 ! implied link automatically realized ! proximal phalanx of finger is_a: UBERON:0003639 ! implied link automatically realized ! hand digit 5 phalanx relationship: part_of UBERON:0003625 intersection_of: UBERON:0004302 ! proximal phalanx intersection_of: part_of UBERON:0003625 ! hand digit 5 [Term] id: UBERON:0004332 name: proximal phalanx of foot digit 1 def: "A proximal phalanx that is part of a foot digit 1 [Obol]." [OBOL:automatic] synonym: "foot digit 1 proximal phalanx" EXACT [OBOL:automatic] synonym: "hallux proximal phalanx" EXACT [OBOL:automatic] synonym: "proximal phalanx of big toe" EXACT [FMA:43252] synonym: "proximal phalanx of foot digit 1" EXACT [OBOL:automatic] synonym: "proximal phalanx of great toe" EXACT [FMA:43252] synonym: "proximal phalanx of hallux" EXACT [OBOL:automatic] xref: FMA:43252 xref: SCTID:182150003 is_a: UBERON:0003640 ! implied link automatically realized ! foot digit 1 phalanx is_a: UBERON:0003868 ! implied link automatically realized ! proximal phalanx of toe relationship: part_of UBERON:0003631 intersection_of: UBERON:0004302 ! proximal phalanx intersection_of: part_of UBERON:0003631 ! foot digit 1 [Term] id: UBERON:0004333 name: proximal phalanx of foot digit 2 def: "A proximal phalanx that is part of a foot digit 2 [Obol]." [OBOL:automatic] synonym: "2nd toe proximal phalanx" EXACT [OBOL:automatic] synonym: "foot digit 2 proximal phalanx" EXACT [OBOL:automatic] synonym: "proximal phalanx of 2nd toe" EXACT [OBOL:automatic] synonym: "proximal phalanx of foot digit 2" EXACT [OBOL:automatic] synonym: "proximal phalanx of second digit of foot" EXACT [FMA:32618] synonym: "proximal phalanx of second toe" EXACT [FMA:32618] synonym: "second proximal phalanx of foot" EXACT [FMA:32618] xref: FMA:32618 xref: SCTID:182151004 is_a: UBERON:0003641 ! implied link automatically realized ! foot digit 2 phalanx is_a: UBERON:0003868 ! implied link automatically realized ! proximal phalanx of toe relationship: part_of UBERON:0003632 intersection_of: UBERON:0004302 ! proximal phalanx intersection_of: part_of UBERON:0003632 ! foot digit 2 [Term] id: UBERON:0004334 name: proximal phalanx of foot digit 3 def: "A proximal phalanx that is part of a foot digit 3 [Obol]." [OBOL:automatic] synonym: "3rd toe proximal phalanx" EXACT [OBOL:automatic] synonym: "foot digit 3 proximal phalanx" EXACT [OBOL:automatic] synonym: "proximal phalanx of 3rd toe" EXACT [OBOL:automatic] synonym: "proximal phalanx of foot digit 3" EXACT [OBOL:automatic] synonym: "proximal phalanx of third digit of foot" EXACT [FMA:32619] synonym: "proximal phalanx of third toe" EXACT [FMA:32619] synonym: "third proximal phalanx of foot" EXACT [FMA:32619] xref: FMA:32619 xref: SCTID:182153001 is_a: UBERON:0003642 ! implied link automatically realized ! foot digit 3 phalanx is_a: UBERON:0003868 ! implied link automatically realized ! proximal phalanx of toe relationship: part_of UBERON:0003633 intersection_of: UBERON:0004302 ! proximal phalanx intersection_of: part_of UBERON:0003633 ! foot digit 3 [Term] id: UBERON:0004335 name: proximal phalanx of foot digit 4 def: "A proximal phalanx that is part of a foot digit 4 [Obol]." [OBOL:automatic] synonym: "4th toe proximal phalanx" EXACT [OBOL:automatic] synonym: "foot digit 4 proximal phalanx" EXACT [OBOL:automatic] synonym: "fourth proximal phalanx of foot" EXACT [FMA:32620] synonym: "proximal phalanx of 4th toe" EXACT [OBOL:automatic] synonym: "proximal phalanx of foot digit 4" EXACT [OBOL:automatic] synonym: "proximal phalanx of fourth digit of foot" EXACT [FMA:32620] synonym: "proximal phalanx of fourth toe" EXACT [FMA:32620] xref: FMA:32620 xref: SCTID:182155008 is_a: UBERON:0003862 ! implied link automatically realized ! foot digit 4 phalanx is_a: UBERON:0003868 ! implied link automatically realized ! proximal phalanx of toe relationship: part_of UBERON:0003634 intersection_of: UBERON:0004302 ! proximal phalanx intersection_of: part_of UBERON:0003634 ! foot digit 4 [Term] id: UBERON:0004336 name: proximal phalanx of foot digit 5 def: "A proximal phalanx that is part of a foot digit 5 [Obol]." [OBOL:automatic] synonym: "5th toe proximal phalanx" EXACT [OBOL:automatic] synonym: "fifth proximal phalanx of foot" EXACT [FMA:32621] synonym: "foot digit 5 proximal phalanx" EXACT [OBOL:automatic] synonym: "proximal phalanx of 5th toe" EXACT [OBOL:automatic] synonym: "proximal phalanx of fifth digit of foot" EXACT [FMA:32621] synonym: "proximal phalanx of fifth toe" EXACT [FMA:32621] synonym: "proximal phalanx of foot digit 5" EXACT [OBOL:automatic] synonym: "proximal phalanx of little toe" EXACT [OBOL:automatic] xref: FMA:32621 xref: SCTID:182157000 is_a: UBERON:0003863 ! implied link automatically realized ! foot digit 5 phalanx is_a: UBERON:0003868 ! implied link automatically realized ! proximal phalanx of toe relationship: part_of UBERON:0003635 intersection_of: UBERON:0004302 ! proximal phalanx intersection_of: part_of UBERON:0003635 ! foot digit 5 [Term] id: UBERON:0004337 name: distal phalanx of hand digit 1 def: "A distal phalanx that is part of a hand digit 1 [Obol]." [OBOL:automatic] synonym: "distal phalanx of first digit of hand" EXACT [FMA:23945] synonym: "distal phalanx of thumb" EXACT [OBOL:automatic] synonym: "first distal phalanx of hand" EXACT [FMA:23945] synonym: "thumb distal phalanx" EXACT [OBOL:automatic] xref: FMA:23945 xref: SCTID:182007006 is_a: UBERON:0003620 ! implied link automatically realized ! hand digit 1 phalanx is_a: UBERON:0003865 ! implied link automatically realized ! distal phalanx of finger relationship: part_of UBERON:0001463 intersection_of: UBERON:0004300 ! distal phalanx intersection_of: part_of UBERON:0001463 ! hand digit 1 [Term] id: UBERON:0004338 name: proximal phalanx of hand digit 1 def: "A proximal phalanx that is part of a hand digit 1 [Obol]." [OBOL:automatic] synonym: "first proximal phalanx of hand" EXACT [FMA:23918] synonym: "proximal phalanx of first digit of hand" EXACT [FMA:23918] synonym: "proximal phalanx of thumb" EXACT [OBOL:automatic] synonym: "thumb proximal" EXACT [OBOL:automatic] xref: FMA:23918 xref: SCTID:181992006 is_a: UBERON:0002234 ! implied link automatically realized ! proximal phalanx of finger is_a: UBERON:0003620 ! implied link automatically realized ! hand digit 1 phalanx relationship: part_of UBERON:0001463 intersection_of: UBERON:0004302 ! proximal phalanx intersection_of: part_of UBERON:0001463 ! hand digit 1 [Term] id: UBERON:0004339 name: calvaria def: "the upper domelike portion of the skull[MP]. the upper part of the cranium and surrounds the cranial cavity containing the brain. It is formed from frontal, parietal, temporal and occipital bones." [MP:0000076, Wikipedia:Calvaria_(skull)] comment: calvaria part_of neurocranium in FMA, but no definition. MP class now merged. Gray's Anatomy's list includes the Ethmoid and Sphenoid bone in the Calvaria. Some books state that calvaria consists of just the frontal bone, parietal bone, temporal bone, and occipital bone. Note vault may not be precisely equivalent to calvaria synonym: "calva" EXACT [FMA:52800] synonym: "vault of skull" EXACT [EHDAA2:0002167] xref: EHDAA:9538 xref: EHDAA2:0002167 xref: EMAPA:18016 xref: FMA:52800 xref: OG:0000331 xref: SCTID:140592008 is_a: UBERON:0000032 ! implied link automatically realized ! cranial structure is_a: UBERON:0004765 ! skeletal element relationship: part_of UBERON:0003128 ! cranium [Term] id: UBERON:0004340 name: allantois def: "Allantois (plural allantoides or allantoises) is a part of a developing animal conceptus (which consists of all embryonic and extra-embryonic tissues). It helps the embryo exchange gases and handle liquid waste. The allantois, along with the amnion and chorion (other embryonic membranes), identify humans as amniotes, along with reptiles, dinosaurs, birds, and other mammals. Of the vertebrates, only Ichthyopsidas lack this structure. [WP,unvetted]." [MP:0001726, Wikipedia:Allantois] comment: a diverticulum of the hindgut endoderm [ISBN10:0073040584 "Vertebrates, Kardong"] xref: BTO:0000474 xref: EHDAA2:0000114 xref: EMAPA:16107 xref: EMAPA:28547 xref: MESH:A.16.254.403.147 xref: ncithesaurus:Allantois xref: OG:0000738 xref: SCTID:308825007 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005631 ! extraembryonic membrane relationship: develops_from UBERON:0000925 {source="ISBN10:0073040584"} ! endoderm relationship: develops_from UBERON:0004872 {source="ISBN10:0073040584"} ! splanchnic layer of lateral plate mesoderm [Term] id: UBERON:0004341 name: primitive streak def: "The primitive streak is a structure that forms during the early stages of avian, reptilian and mammalian embryonic development[WP]. the midline ridge of the embryonic epiblast that later develops into mesoderm and endoderm[MP]" [MP:0002231, Wikipedia:Primitive_streak] comment: TODO - check subset: early_development xref: EHDAA:185 xref: EHDAA2:0001525 xref: EMAPA:16072 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Gray13.png/200px-Gray13.png xref: ncithesaurus:Primitive_Streak xref: OG:0001202 xref: SCTID:361438007 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0002532 ! epiblast [Term] id: UBERON:0004343 name: foot plate def: "the distal elements of the developing limb of vertebrates that will give rise to the pedal appendages (e.g. hand, foot, paw)" [MP:0004576] synonym: "autopod plate" EXACT [] xref: ncithesaurus:Foot_Plate is_a: UBERON:0002050 ! implied link automatically realized ! embryonic structure relationship: develops_into UBERON:0002470 intersection_of: UBERON:0002050 ! embryonic structure intersection_of: develops_into UBERON:0002470 ! autopod [Term] id: UBERON:0004344 name: cardinal vein def: "any of the four veins in the developing vertebrate embryo which run along each side of the vertebral column" [MP:0004783] xref: AAO:0011022 xref: BTO:0004385 xref: EHDAA:1310 xref: EHDAA2:0000213 xref: EMAPA:16354 xref: ncithesaurus:Cardinal_Vein xref: OG:0001197 xref: SCTID:362860004 xref: XAO:0000052 is_a: UBERON:0001638 ! vein is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue [Term] id: UBERON:0004345 name: trophectoderm def: "outermost layer of cells in the blastodermic vesicle, which will develop into the trophoblast layer and then contact the endometrium and take part in establishing the embryo's means of nutrition" [MP:0005028] subset: early_development xref: BTO:0001840 xref: EHDAA:56 xref: EHDAA2:0002091 xref: EMAPA:16046 xref: OG:0000979 is_a: UBERON:0000478 {source="EHDAA2"} ! extraembryonic structure [Term] id: UBERON:0004346 name: gubernaculum alt_id: UBERON:0000452 alt_id: UBERON:BTO_0002813-FMA_20421 def: "embryonic structures which begin as undifferentiated mesenchyme attaching to the caudal end of the gonads. The gubernaculum is present only during the development of the urinary and reproductive organs, being replaced by distinct vestiges in males and females[WP]. Enitoinguinal ligaments that, in the male, connect the fetal testis to the developing scrotum, and, in the female, connect the ovaries to the uterus[MP]" [MP:0005149, Wikipedia:Gubernaculum] comment: WP def is male/female, split term? EMAP is male-specific. vestigial adult in FMA. TODO synonym: "caudal suspensory ligament" RELATED [EMAPA:19089] synonym: "gubernaculum testis" NARROW [] synonym: "Hunter's gubernaculum" RELATED [BTO:0002813] xref: ncithesaurus:Gubernaculum_Testis is_a: UBERON:0003104 {source="Wikipedia"} ! mesenchyme is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure is_a: UBERON:0005256 ! implied link automatically realized ! trunk mesenchyme is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue is_a: UBERON:0006590 {source="FMA"} ! vestigial embryonic structure relationship: attached_to UBERON:0000991 ! gonad relationship: develops_from UBERON:0003064 {source="Wikipedia"} ! intermediate mesoderm relationship: part_of UBERON:0000323 {source="BTO"} ! late embryo relationship: part_of UBERON:0000990 ! reproductive system relationship: part_of UBERON:0002358 ! peritoneum [Term] id: UBERON:0004347 name: limb bud def: "the mesenchymal outgrowth on the lateral trunk of the embryo that develops into the limbs[MP]." [MP:0005650, Wikipedia:Limb_bud] comment: induced_by Fgf10, capable of initiating limb forming interactions between endoderm and mesoderm synonym: "limb buds" EXACT PLURAL [] synonym: "limbbud" EXACT [GO:0060174] xref: AAO:0010375 xref: BTO:0001640 xref: GAID:1307 xref: MESH:A.16.254.462 xref: ncithesaurus:Limb_Bud xref: XAO:0003161 is_a: UBERON:0004357 ! limb/fin bud relationship: develops_from UBERON:0005733 ! limb field relationship: develops_into UBERON:0002101 ! limb relationship: induced_by UBERON:0003081 {source="ISBN:9780878932504"} ! lateral plate mesoderm [Term] id: UBERON:0004348 name: optic eminence def: "the embryonic structure that gives rise to the corneal ectoderm" [MP:0006305] xref: EHDAA:938 xref: EHDAA2:0001308 xref: EMAPA:16322 xref: EMAPA:17003 xref: OG:0001296 is_a: UBERON:0000061 ! anatomical structure relationship: develops_into UBERON:0000964 ! cornea [Term] id: UBERON:0004353 name: female inguinal canal def: "An inguinal canal that is part of a female organism. Conveys the round ligament + the ilioinguinal nerve.[WP,unvetted]." [MP:0008015, Wikipedia:Inguinal_canal#Contents] xref: EMAPA:19171 is_a: UBERON:0003702 ! implied link automatically realized ! inguinal canal is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0000474 intersection_of: UBERON:0003702 ! inguinal canal intersection_of: part_of UBERON:0000474 ! female reproductive system [Term] id: UBERON:0004354 name: male inguinal canal def: "An inguinal canal that is part of a male organism. Conveys the spermatic cord and its coverings + the ilioinguinal nerve.[WP,unvetted]." [MP:0008016, Wikipedia:Inguinal_canal#Contents] xref: EMAPA:26913 is_a: UBERON:0003702 ! implied link automatically realized ! inguinal canal is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0000079 intersection_of: UBERON:0003702 ! inguinal canal intersection_of: part_of UBERON:0000079 ! male reproductive system [Term] id: UBERON:0004355 name: podocyte foot process def: "the footlike extension of podocytes that interdigitate with one another to form the walls of the glomerular capillaries" [MP:0008059] comment: TODO - submit to GO is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0004356 name: apical ectodermal ridge def: "multilayered ectodermal region at the distal tip of a limb bud necessary for the proper development of the underlying mesenchyme[MP]. Along with the zone of polarizing activity, it is a crucial organizing region during limb development[WP]." [MP:0001676, Wikipedia:Apical_ectodermal_ridge] comment: Functions: maintaining mesenchyme in plastic proliferating state; maintaining expression of A-P axis genes; interacting with D-V proteins. Genes: AER induced by Fgf10 in mesenchyme. AER secretes Fgf8, which stimulates mitosis in the mesenchyme causing Fgf10 production - positive feedback loop synonym: "AER" RELATED [MP:0001676] xref: AAO:0010760 xref: ncithesaurus:Apical_Ectodermal_Ridge xref: XAO:0004121 xref: ZFA:0001702 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: induced_by UBERON:0003104 ! mesenchyme relationship: part_of UBERON:0000924 ! ectoderm relationship: part_of UBERON:0004357 ! limb/fin bud [Term] id: UBERON:0004357 name: limb/fin bud comment: Genes: In limb buds of chick and mouse, Shh expression is activated as soon as there is a morphological bud, whereas in S. canicula fin buds, consistent with reported data in other cartilaginous fishes, Shh is transcribed late in fin development[PMID:17187056] xref: OG:0001258 is_a: UBERON:0002050 ! implied link automatically realized ! embryonic structure is_a: UBERON:0003102 ! surface structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0005423 ! developing anatomical structure relationship: develops_from UBERON:0005732 ! limb/fin field relationship: develops_into UBERON:0004708 ! limb/fin relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0004358 name: caput epididymis def: "the head of the epididymis" [MP:0002660] synonym: "caput" BROAD [MP:0002660] synonym: "caput epididymidis" RELATED [BTO:0000336] synonym: "epididymal head" EXACT [FMA:18259] synonym: "epididymis head" EXACT [FMA:18259] synonym: "epidymis head" EXACT [FMA:18259] synonym: "head of epididymis" EXACT [FMA:18259] synonym: "head of epidymis " EXACT [] xref: BTO:0000336 xref: EMAPA:19291 xref: FMA:18259 xref: MA:0002762 xref: ncithesaurus:Head_of_the_Epididymis xref: SCTID:362282002 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0001301 ! epididymis [Term] id: UBERON:0004359 name: corpus epididymis def: "the body of the epididymis" [MP:0002661] synonym: "body of epididymis" EXACT [FMA:18260] synonym: "body of epididymis " EXACT [FMA:18260] synonym: "body of epidymis " EXACT [] synonym: "corpus epididymidis" RELATED [BTO:0000209] synonym: "epididymal body" EXACT [FMA:18260] synonym: "epididymis body" EXACT [FMA:18260] synonym: "epidymis body" EXACT [] xref: BTO:0000209 xref: EMAPA:19293 xref: FMA:18260 xref: MA:0002764 xref: ncithesaurus:Body_of_the_Epididymis xref: SCTID:279620001 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0001301 ! epididymis [Term] id: UBERON:0004360 name: cauda epididymis def: "the tail of the epididymis" [MP:0002662] synonym: "cauda epididymidis" EXACT [BTO:0000210] synonym: "corpus" BROAD [MP:0002662] synonym: "epididymal cauda" EXACT [BTO:0000210] synonym: "epididymal tail" EXACT [FMA:18261] synonym: "epididymis tail" EXACT [FMA:18261] synonym: "epidymis tail" EXACT [] synonym: "tail of epididymis" EXACT [FMA:18261] synonym: "tail of epididymis " EXACT [FMA:18261] synonym: "tail of epidymis " EXACT [] xref: BTO:0000210 xref: EMAPA:19292 xref: FMA:18261 xref: MA:0002763 xref: ncithesaurus:Tail_of_the_Epididymis xref: SCTID:279621002 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0001301 ! epididymis [Term] id: UBERON:0004361 name: stylohyoid ligament def: "the fibrous cord that connects the tip of the styloid process of the temporal bone to the lesser horn of the hyoid bone" [MP:0009918] synonym: "stylo-hyoid ligament" RELATED [MA:0002957] xref: FMA:72308 xref: MA:0002957 xref: SCTID:66275001 is_a: UBERON:0008846 {source="FMA"} ! skeletal ligament [Term] id: UBERON:0004362 name: mandibular arch def: "First of six branchial arches that develops in fetal life during the fourth week of development.[1] It is located between the stomodeum and the first pharyngeal groove." [Wikipedia:First_branchial_arch] comment: TODO - check comparative anatomy. In XAO, develops_from visceral pouch 1 subset: uberon_slim subset: vertebrate_core synonym: "1st arch" RELATED [EHDAA2:0000006] synonym: "1st pharyngeal arch" EXACT [] synonym: "branchial arch 1" EXACT SENSU [] synonym: "first branchial arch" EXACT SENSU [] synonym: "first pharyngeal arch" EXACT [] synonym: "first visceral arch" EXACT SENSU [] synonym: "pharyngeal arch 1" EXACT [] synonym: "visceral arch 1" EXACT SENSU [] xref: AAO:0010364 xref: EHDAA:573 xref: EHDAA2:0000006 xref: EMAPA:16118 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2d/Gray48.png/200px-Gray48.png xref: ncithesaurus:First_Pharyngeal_Arch xref: OG:0000296 xref: SCTID:308767008 xref: XAO:0000097 xref: ZFA:0001612 is_a: UBERON:0002539 ! pharyngeal arch [Term] id: UBERON:0004363 name: aortic arch alt_id: UBERON:0004342 alt_id: UBERON:FMA_3768-MA_0000475-MIAA_0000059 def: "one of a series of six paired embryological vascular structures which give rise to several major arteries." [MP:0002672, Wikipedia:Aortic_arches] comment: Do not confuse with arch of aorta subset: uberon_slim subset: vertebrate_core synonym: "aortic arches" EXACT PLURAL [ZFA:0005004] synonym: "branchial aortic arches " EXACT PLURAL [ZFIN:ZDB-PUB-080512-6] synonym: "branchial arch artery" EXACT [EMAPA:16684] synonym: "embryonic aortic arch artery" EXACT [EMAPA:16684, MP:0002672] xref: AAO:0010414 xref: EFO:0003695 xref: EHDAA:398 xref: EHDAA:7327 xref: EHDAA2:0000132 xref: EHDAA2:0000186 xref: EMAPA:16684 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Gray473.png/200px-Gray473.png xref: ncithesaurus:Aortic_Arch xref: OG:0000122 xref: XAO:0000341 xref: ZFA:0005004 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0001637 {source="ZFA"} ! artery is_a: UBERON:0003351 ! implied link automatically realized ! pharyngeal epithelium is_a: UBERON:0003469 ! implied link automatically realized ! respiratory system artery is_a: UBERON:0003496 ! implied link automatically realized ! head blood vessel is_a: UBERON:0004797 ! implied link automatically realized ! blood vessel layer is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue is_a: UBERON:0005423 ! developing anatomical structure is_a: UBERON:0007497 ! implied link automatically realized ! developing epithelial placode relationship: develops_from UBERON:0002342 ! neural crest relationship: develops_into UBERON:0001637 ! artery relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0002539 ! pharyngeal arch relationship: part_of UBERON:0007303 {source="ZFA"} ! pharyngeal vasculature relationship: part_of UBERON:0008814 ! pharyngeal system [Term] id: UBERON:0004364 name: ectoplacental cone def: "thickened trophoblast of the blastocyst in rodents that becomes the fetal portion of the placenta" [MP:0001717] xref: BTO:0001715 xref: EMAPA:16059 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000088 ! trophoblast relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0004365 name: vitelline blood vessel def: "blood vesself of the yolk sac." [MP:0001719] is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001981 ! implied link automatically realized ! blood vessel is_a: UBERON:0005911 ! implied link automatically realized ! endo-epithelium relationship: part_of UBERON:0001040 intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0001040 ! yolk sac [Term] id: UBERON:0004366 name: extraembryonic ectoderm def: "layer of the endoderm of the extraembryonic tissue." [MP:0002583] xref: EMAPA:16065 xref: EMAPA:16077 xref: EMAPA:16110 is_a: UBERON:0000924 ! implied link automatically realized ! ectoderm relationship: part_of UBERON:0000478 intersection_of: UBERON:0000924 ! ectoderm intersection_of: part_of UBERON:0000478 ! extraembryonic structure [Term] id: UBERON:0004367 name: Descemet's membrane def: "transparent homogeneous acellular layer found between the substantia propria and the endothelial layer of the cornea[MP]. The strong, resistant, thin, noncellular fourth layer of the cornea, located between the endothelium (from which it is secreted) and the stroma. (Cline et al., Dictionary of Visual Science, 4th ed)." [MP:0004285] subset: vertebrate_core synonym: "Descemet membrane" EXACT [] synonym: "Descemet's posterior elastic lamina" EXACT [FMA:58309] synonym: "lamina limitans posterior" EXACT [FMA:58309] synonym: "posterior limiting lamina" EXACT [MA:0001246] synonym: "posterior limiting lamina " EXACT [MA:0001246] synonym: "posterior limiting lamina of cornea" EXACT [FMA:58309] synonym: "posterior limiting lamina of cornea " EXACT [FMA:58309] xref: EMAPA:18804 xref: FMA:58309 xref: GAID:894 xref: MA:0001246 xref: MESH:A.09.371.060.217.271 xref: ncithesaurus:Descemet_s_Membrane xref: SCTID:281076002 xref: ZFA:0001686 is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0005769 ! basement membrane relationship: adjacent_to UBERON:0001777 ! substantia propria of cornea relationship: adjacent_to UBERON:0001985 ! corneal endothelium relationship: part_of UBERON:0000964 ! cornea [Term] id: UBERON:0004368 name: Reichert's cartilage def: "cartilage found in the mesenchyme of the second branchial arch in the embryo, from which develop the stapes, the styloid processes, the stylohyoid ligaments, and the lesser cornua of the hyoid bone." [MP:0004916] synonym: "hyaloid cartilage" EXACT [MP:0004916] synonym: "Reichert cartilage" EXACT [] synonym: "second pharyngeal arch cartilage" EXACT [MP:0004916] xref: EMAPA:17351 xref: EMAPA:17622 is_a: UBERON:0002418 ! cartilage tissue is_a: UBERON:0003566 ! implied link automatically realized ! head connective tissue is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue relationship: part_of UBERON:0003066 ! hyoid arch relationship: part_of UBERON:0003104 ! mesenchyme [Term] id: UBERON:0004369 name: Reichert's membrane def: "a thick multilayered basement membrane between the parietal endoderm cells and the trophoblast cells" [DOI:10.1007/BF00184752] xref: EMAPA:16057 is_a: UBERON:0002050 ! embryonic structure relationship: surrounded_by UBERON:0000088 ! trophoblast relationship: surrounded_by UBERON:0000925 ! endoderm [Term] id: UBERON:0004370 name: anterior limiting lamina of cornea subset: vertebrate_core synonym: "anterior limiting lamina" EXACT [MA:0001240] synonym: "anterior limiting lamina of cornea" EXACT [FMA:58273] synonym: "Bowman's anterior elastic lamina" EXACT [FMA:58273] synonym: "Bowman's layer" EXACT [FMA:58273] synonym: "Bowman's membrane" EXACT [FMA:58273] synonym: "lamina limitans anterior (cornea)" EXACT [FMA:58273] synonym: "Reichert's membrane" RELATED DUBIOUS [http://sourceforge.net/tracker/?func=detail&aid=2956371&group_id=76834&atid=974957] xref: EMAPA:16057 xref: FMA:58273 xref: MA:0001240 xref: ncithesaurus:Bowman_s_Membrane xref: SCTID:281075003 xref: ZFA:0001684 is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0005769 ! basement membrane relationship: part_of UBERON:0000964 ! cornea [Term] id: UBERON:0004374 name: vitelline vasculature def: "vasculature of the yolk sac." [MP:0001719] is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0006876 ! implied link automatically realized ! vasculature of organ relationship: part_of UBERON:0001040 intersection_of: UBERON:0002049 ! vasculature intersection_of: part_of UBERON:0001040 ! yolk sac [Term] id: UBERON:0004375 name: bone of appendage def: "A bone that is part of an appendage [Obol]." [OBOL:automatic] synonym: "appendage bone" EXACT [] is_a: UBERON:0001474 ! implied link automatically realized ! bone relationship: part_of UBERON:0000026 intersection_of: UBERON:0001474 ! bone intersection_of: part_of UBERON:0000026 ! appendage [Term] id: UBERON:0004376 name: fin bone def: "A bone that is part of a fin [Obol]." [OBOL:automatic] synonym: "bone of fin" EXACT [] is_a: UBERON:0001474 ! implied link automatically realized ! bone relationship: part_of UBERON:0008897 intersection_of: UBERON:0001474 ! bone intersection_of: part_of UBERON:0008897 ! fin [Term] id: UBERON:0004377 name: distal metaphysis synonym: "distal diaphyseal end of long bone" EXACT [FMA:32824] xref: FMA:32824 is_a: UBERON:0001438 ! implied link automatically realized ! metaphysis relationship: in_distal_side_of UBERON:0004769 intersection_of: UBERON:0001438 ! metaphysis intersection_of: in_distal_side_of UBERON:0004769 ! diaphysis [Term] id: UBERON:0004378 name: proximal metaphysis synonym: "proximal diaphyseal end of long bone" EXACT [FMA:32823] xref: FMA:32823 is_a: UBERON:0001438 ! implied link automatically realized ! metaphysis relationship: in_proximal_side_of UBERON:0004769 intersection_of: UBERON:0001438 ! metaphysis intersection_of: in_proximal_side_of UBERON:0004769 ! diaphysis [Term] id: UBERON:0004379 name: distal epiphysis synonym: "distal end of long bone" EXACT [FMA:32822] xref: FMA:32822 xref: SCTID:279999006 is_a: UBERON:0001437 ! implied link automatically realized ! epiphysis relationship: adjacent_to UBERON:0004377 intersection_of: UBERON:0001437 ! epiphysis intersection_of: adjacent_to UBERON:0004377 ! distal metaphysis [Term] id: UBERON:0004380 name: proximal epiphysis synonym: "proximal end of long bone" EXACT [FMA:32821] xref: FMA:32821 xref: SCTID:279998003 is_a: UBERON:0001437 ! implied link automatically realized ! epiphysis relationship: adjacent_to UBERON:0004378 intersection_of: UBERON:0001437 ! epiphysis intersection_of: adjacent_to UBERON:0004378 ! proximal metaphysis [Term] id: UBERON:0004381 name: skeleton of limb def: "A subdivision of skeletal system that is part of a limb [Obol]." [OBOL:automatic] synonym: "limb skeleton" EXACT [] synonym: "set of bones of limb" EXACT [] xref: EHDAA2:0002221 is_a: UBERON:0000075 ! implied link automatically realized ! subdivision of skeletal system relationship: part_of UBERON:0002101 intersection_of: UBERON:0000075 ! subdivision of skeletal system intersection_of: part_of UBERON:0002101 ! limb relationship: develops_from UBERON:0003081 {source="ISBN:9780878932504"} ! lateral plate mesoderm relationship: part_of UBERON:0002091 {source="cjm"} ! appendicular skeleton [Term] id: UBERON:0004382 name: epiphysis of humerus def: "An epiphysis that is part of a humerus [Obol]." [OBOL:automatic] synonym: "humeral epiphysis" EXACT [OBOL:automatic] xref: FMA:32825 xref: SCTID:313054009 is_a: UBERON:0001437 ! implied link automatically realized ! epiphysis relationship: part_of UBERON:0000976 intersection_of: UBERON:0001437 ! epiphysis intersection_of: part_of UBERON:0000976 ! humerus [Term] id: UBERON:0004383 name: epiphysis of tibia def: "An epiphysis that is part of a tibia [Obol]." [OBOL:automatic] synonym: "tibial epiphysis" EXACT [FMA:33112] xref: FMA:33112 xref: SCTID:314626006 is_a: UBERON:0001437 ! implied link automatically realized ! epiphysis relationship: part_of UBERON:0000979 intersection_of: UBERON:0001437 ! epiphysis intersection_of: part_of UBERON:0000979 ! tibia [Term] id: UBERON:0004384 name: epiphysis of femur def: "An epiphysis that is part of a femur [Obol]." [OBOL:automatic] synonym: "femoral epiphysis" EXACT [FMA:32838] xref: FMA:32838 xref: SCTID:314625005 is_a: UBERON:0001437 ! implied link automatically realized ! epiphysis relationship: part_of UBERON:0000981 intersection_of: UBERON:0001437 ! epiphysis intersection_of: part_of UBERON:0000981 ! femur [Term] id: UBERON:0004385 name: epiphysis of radius def: "An epiphysis that is part of a radius [Obol]." [OBOL:automatic] synonym: "radial epiphysis" EXACT [FMA:33770] xref: FMA:33770 xref: SCTID:313055005 is_a: UBERON:0001437 ! implied link automatically realized ! epiphysis relationship: part_of UBERON:0001423 intersection_of: UBERON:0001437 ! epiphysis intersection_of: part_of UBERON:0001423 ! radius [Term] id: UBERON:0004386 name: epiphysis of ulna def: "An epiphysis that is part of a ulna [Obol]." [OBOL:automatic] synonym: "ulnar epiphysis" EXACT [FMA:33748] xref: FMA:33748 xref: SCTID:313056006 is_a: UBERON:0001437 ! implied link automatically realized ! epiphysis relationship: part_of UBERON:0001424 intersection_of: UBERON:0001437 ! epiphysis intersection_of: part_of UBERON:0001424 ! ulna [Term] id: UBERON:0004387 name: epiphysis of phalanx of finger def: "An epiphysis that is part of a phalanx of finger [Obol]." [OBOL:automatic] xref: FMA:240707 xref: SCTID:314620000 is_a: UBERON:0004446 ! implied link automatically realized ! epiphysis of phalanx relationship: part_of UBERON:0001436 intersection_of: UBERON:0001437 ! epiphysis intersection_of: part_of UBERON:0001436 ! phalanx of finger [Term] id: UBERON:0004388 name: epiphysis of fibula def: "An epiphysis that is part of a fibula [Obol]." [OBOL:automatic] synonym: "fibula epiphysis" EXACT [FMA:33726] xref: FMA:33726 is_a: UBERON:0001437 ! implied link automatically realized ! epiphysis relationship: part_of UBERON:0001446 intersection_of: UBERON:0001437 ! epiphysis intersection_of: part_of UBERON:0001446 ! fibula [Term] id: UBERON:0004389 name: epiphysis of metatarsal bone def: "An epiphysis that is part of a metatarsal bone [Obol]." [OBOL:automatic] synonym: "metatarsal bone epiphysis" EXACT [FMA:33814] xref: FMA:33814 is_a: UBERON:0001437 ! implied link automatically realized ! epiphysis relationship: part_of UBERON:0001448 intersection_of: UBERON:0001437 ! epiphysis intersection_of: part_of UBERON:0001448 ! metatarsal bone [Term] id: UBERON:0004390 name: epiphysis of metacarpal bone def: "An epiphysis that is part of a metacarpal bone [Obol]." [OBOL:automatic] synonym: "metacarpal bone epiphysis" EXACT [FMA:33792] xref: FMA:33792 is_a: UBERON:0001437 ! implied link automatically realized ! epiphysis relationship: part_of UBERON:0002374 intersection_of: UBERON:0001437 ! epiphysis intersection_of: part_of UBERON:0002374 ! metacarpal bone [Term] id: UBERON:0004391 name: epiphysis of first metacarpal bone def: "An epiphysis that is part of a metacarpal bone of digit 1 [Obol]." [OBOL:automatic] synonym: "first metacarpal bone epiphysis" EXACT [FMA:33793] xref: FMA:33793 is_a: UBERON:0004387 ! implied link automatically realized ! epiphysis of phalanx of finger is_a: UBERON:0004390 ! implied link automatically realized ! epiphysis of metacarpal bone relationship: part_of UBERON:0003645 intersection_of: UBERON:0001437 ! epiphysis intersection_of: part_of UBERON:0003645 ! metacarpal bone of digit 1 [Term] id: UBERON:0004392 name: epiphysis of second metacarpal bone def: "An epiphysis that is part of a metacarpal bone of digit 2 [Obol]." [OBOL:automatic] synonym: "second metacarpal bone epiphysis" EXACT [FMA:33794] xref: FMA:33794 is_a: UBERON:0004387 ! implied link automatically realized ! epiphysis of phalanx of finger is_a: UBERON:0004390 ! implied link automatically realized ! epiphysis of metacarpal bone relationship: part_of UBERON:0003646 intersection_of: UBERON:0001437 ! epiphysis intersection_of: part_of UBERON:0003646 ! metacarpal bone of digit 2 [Term] id: UBERON:0004393 name: epiphysis of third metacarpal bone def: "An epiphysis that is part of a metacarpal bone of digit 3 [Obol]." [OBOL:automatic] synonym: "third metacarpal bone epiphysis" EXACT [FMA:86328] xref: FMA:86328 is_a: UBERON:0004387 ! implied link automatically realized ! epiphysis of phalanx of finger is_a: UBERON:0004390 ! implied link automatically realized ! epiphysis of metacarpal bone relationship: part_of UBERON:0003647 intersection_of: UBERON:0001437 ! epiphysis intersection_of: part_of UBERON:0003647 ! metacarpal bone of digit 3 [Term] id: UBERON:0004394 name: epiphysis of fourth metacarpal bone def: "An epiphysis that is part of a metacarpal bone of digit 4 [Obol]." [OBOL:automatic] synonym: "fourth metacarpal bone epiphysis" EXACT [FMA:86329] xref: FMA:86329 is_a: UBERON:0004387 ! implied link automatically realized ! epiphysis of phalanx of finger is_a: UBERON:0004390 ! implied link automatically realized ! epiphysis of metacarpal bone relationship: part_of UBERON:0003648 intersection_of: UBERON:0001437 ! epiphysis intersection_of: part_of UBERON:0003648 ! metacarpal bone of digit 4 [Term] id: UBERON:0004395 name: epiphysis of first metatarsal bone def: "An epiphysis that is part of a metatarsal bone of digit 1 [Obol]." [OBOL:automatic] synonym: "first metatarsal bone epiphysis" EXACT [FMA:33815] xref: FMA:33815 is_a: UBERON:0004389 ! implied link automatically realized ! epiphysis of metatarsal bone is_a: UBERON:0004446 ! implied link automatically realized ! epiphysis of phalanx relationship: part_of UBERON:0003650 intersection_of: UBERON:0001437 ! epiphysis intersection_of: part_of UBERON:0003650 ! metatarsal bone of digit 1 [Term] id: UBERON:0004396 name: epiphysis of second metatarsal bone def: "An epiphysis that is part of a metatarsal bone of digit 2 [Obol]." [OBOL:automatic] synonym: "second metatarsal bone epiphysis" EXACT [FMA:33816] xref: FMA:33816 is_a: UBERON:0004389 ! implied link automatically realized ! epiphysis of metatarsal bone is_a: UBERON:0004446 ! implied link automatically realized ! epiphysis of phalanx relationship: part_of UBERON:0003651 intersection_of: UBERON:0001437 ! epiphysis intersection_of: part_of UBERON:0003651 ! metatarsal bone of digit 2 [Term] id: UBERON:0004397 name: epiphysis of third metatarsal bone def: "An epiphysis that is part of a metatarsal bone of digit 3 [Obol]." [OBOL:automatic] synonym: "third metatarsal bone epiphysis" EXACT [FMA:86313] xref: FMA:86313 is_a: UBERON:0004389 ! implied link automatically realized ! epiphysis of metatarsal bone is_a: UBERON:0004446 ! implied link automatically realized ! epiphysis of phalanx relationship: part_of UBERON:0003652 intersection_of: UBERON:0001437 ! epiphysis intersection_of: part_of UBERON:0003652 ! metatarsal bone of digit 3 [Term] id: UBERON:0004398 name: epiphysis of fourth metatarsal bone def: "An epiphysis that is part of a metatarsal bone of digit 4 [Obol]." [OBOL:automatic] synonym: "fourth metatarsal bone epiphysis" EXACT [FMA:86314] xref: FMA:86314 is_a: UBERON:0004389 ! implied link automatically realized ! epiphysis of metatarsal bone is_a: UBERON:0004446 ! implied link automatically realized ! epiphysis of phalanx relationship: part_of UBERON:0003653 intersection_of: UBERON:0001437 ! epiphysis intersection_of: part_of UBERON:0003653 ! metatarsal bone of digit 4 [Term] id: UBERON:0004399 name: epiphysis of fifth metatarsal bone def: "An epiphysis that is part of a metatarsal bone of digit 5 [Obol]." [OBOL:automatic] synonym: "fifth metatarsal bone epiphysis" EXACT [FMA:86315] xref: FMA:86315 is_a: UBERON:0004389 ! implied link automatically realized ! epiphysis of metatarsal bone is_a: UBERON:0004446 ! implied link automatically realized ! epiphysis of phalanx relationship: part_of UBERON:0003654 intersection_of: UBERON:0001437 ! epiphysis intersection_of: part_of UBERON:0003654 ! metatarsal bone of digit 5 [Term] id: UBERON:0004400 name: bone tissue of epiphysis def: "A portion of bone tissue that is part of a epiphysis [Obol]." [OBOL:automatic] xref: FMA:241364 is_a: UBERON:0005808 ! implied link automatically realized ! bone tissue of long bone relationship: part_of UBERON:0001437 intersection_of: UBERON:0002481 ! bone tissue intersection_of: part_of UBERON:0001437 ! epiphysis [Term] id: UBERON:0004401 name: bone tissue of distal epiphysis def: "A portion of bone tissue that is part of a distal epiphysis [Obol]." [OBOL:automatic] xref: FMA:241374 is_a: UBERON:0004400 ! implied link automatically realized ! bone tissue of epiphysis relationship: part_of UBERON:0004379 intersection_of: UBERON:0002481 ! bone tissue intersection_of: part_of UBERON:0004379 ! distal epiphysis [Term] id: UBERON:0004402 name: bone tissue of proximal epiphysis def: "A portion of bone tissue that is part of a proximal epiphysis [Obol]." [OBOL:automatic] xref: FMA:241372 is_a: UBERON:0004400 ! implied link automatically realized ! bone tissue of epiphysis relationship: part_of UBERON:0004380 intersection_of: UBERON:0002481 ! bone tissue intersection_of: part_of UBERON:0004380 ! proximal epiphysis [Term] id: UBERON:0004403 name: periosteum of epiphysis def: "A periosteum that is part of a epiphysis [Obol]." [OBOL:automatic] synonym: "epiphysis periosteum" EXACT [FMA:32687] xref: FMA:32687 is_a: UBERON:0002515 ! implied link automatically realized ! periosteum relationship: part_of UBERON:0001437 intersection_of: UBERON:0002515 ! periosteum intersection_of: part_of UBERON:0001437 ! epiphysis [Term] id: UBERON:0004404 name: distal epiphysis of humerus def: "A distal epiphysis that is part of a humerus [Obol]." [OBOL:automatic] synonym: "distal end of humerus" EXACT [FMA:32826] synonym: "lower end of humerus" EXACT [FMA:32826] xref: FMA:32826 xref: SCTID:310655007 is_a: UBERON:0004379 ! implied link automatically realized ! distal epiphysis is_a: UBERON:0004382 ! implied link automatically realized ! epiphysis of humerus relationship: part_of UBERON:0000976 intersection_of: UBERON:0004379 ! distal epiphysis intersection_of: part_of UBERON:0000976 ! humerus [Term] id: UBERON:0004405 name: distal epiphysis of tibia def: "A distal epiphysis that is part of a tibia [Obol]." [OBOL:automatic] synonym: "distal end of tibia" EXACT [FMA:33116] synonym: "lower end of tibia" EXACT [FMA:33116] xref: FMA:33116 xref: SCTID:302527001 is_a: UBERON:0004379 ! implied link automatically realized ! distal epiphysis is_a: UBERON:0004383 ! implied link automatically realized ! epiphysis of tibia relationship: part_of UBERON:0000979 intersection_of: UBERON:0004379 ! distal epiphysis intersection_of: part_of UBERON:0000979 ! tibia [Term] id: UBERON:0004406 name: distal epiphysis of femur def: "A distal epiphysis that is part of a femur [Obol]." [OBOL:automatic] synonym: "distal femoral epiphysis" EXACT [OBOL:automatic, UBERON:cjm] synonym: "distal head of femur" RELATED [AAO:0000893] xref: AAO:0000893 xref: FMA:32844 xref: SCTID:280016000 is_a: UBERON:0004379 ! implied link automatically realized ! distal epiphysis is_a: UBERON:0004384 ! implied link automatically realized ! epiphysis of femur relationship: part_of UBERON:0000981 intersection_of: UBERON:0004379 ! distal epiphysis intersection_of: part_of UBERON:0000981 ! femur [Term] id: UBERON:0004407 name: distal epiphysis of radius def: "A distal epiphysis that is part of a radius [Obol]." [OBOL:automatic] synonym: "distal end of radius" EXACT [FMA:33776] synonym: "lower end of radius" EXACT [FMA:33776] xref: FMA:33776 xref: SCTID:280013008 is_a: UBERON:0004379 ! implied link automatically realized ! distal epiphysis is_a: UBERON:0004385 ! implied link automatically realized ! epiphysis of radius relationship: part_of UBERON:0001423 intersection_of: UBERON:0004379 ! distal epiphysis intersection_of: part_of UBERON:0001423 ! radius [Term] id: UBERON:0004408 name: distal epiphysis of ulna def: "A distal epiphysis that is part of a ulna [Obol]." [OBOL:automatic] synonym: "distal end of ulna" EXACT [FMA:33754] synonym: "lower end of ulna" EXACT [FMA:33754] xref: FMA:33754 xref: SCTID:302521000 is_a: UBERON:0004379 ! implied link automatically realized ! distal epiphysis is_a: UBERON:0004386 ! implied link automatically realized ! epiphysis of ulna relationship: part_of UBERON:0001424 intersection_of: UBERON:0004379 ! distal epiphysis intersection_of: part_of UBERON:0001424 ! ulna [Term] id: UBERON:0004409 name: distal epiphysis of phalanx of finger def: "A distal epiphysis that is part of a phalanx of finger [Obol]." [OBOL:automatic] xref: FMA:226577 xref: SCTID:280046002 is_a: UBERON:0004387 ! implied link automatically realized ! epiphysis of phalanx of finger is_a: UBERON:0004448 ! implied link automatically realized ! distal epiphysis of phalanx relationship: part_of UBERON:0001436 intersection_of: UBERON:0004379 ! distal epiphysis intersection_of: part_of UBERON:0001436 ! phalanx of finger [Term] id: UBERON:0004410 name: distal epiphysis of fibula def: "A distal epiphysis that is part of a fibula [Obol]." [OBOL:automatic] synonym: "distal end of fibula" EXACT [FMA:33732] synonym: "lower end of fibula" EXACT [FMA:33732] xref: FMA:33732 xref: SCTID:129111008 is_a: UBERON:0004379 ! implied link automatically realized ! distal epiphysis is_a: UBERON:0004388 ! implied link automatically realized ! epiphysis of fibula relationship: part_of UBERON:0001446 intersection_of: UBERON:0004379 ! distal epiphysis intersection_of: part_of UBERON:0001446 ! fibula [Term] id: UBERON:0004411 name: proximal epiphysis of humerus def: "The upper extremity of the humerus (proximal humerus) consists of a large rounded head joined to the body by a constricted portion called the neck, and two eminences, the greater and lesser tubercles." [Wikipedia:Upper_extremity_of_humerus] synonym: "head of the humerus" RELATED [Wikipedia:Upper_extremity_of_humerus] synonym: "humeral head" RELATED [Wikipedia:Upper_extremity_of_humerus] synonym: "proximal end of humerus" EXACT [FMA:23362] synonym: "proximal humeral epiphysis" EXACT [OBOL:automatic, UBERON:cjm] synonym: "proximal humerus" RELATED [Wikipedia:Upper_extremity_of_humerus] synonym: "upper end of humerus" EXACT [FMA:23362] xref: FMA:23362 xref: ncithesaurus:Head_of_the_Humerus xref: SCTID:280028008 is_a: UBERON:0004380 ! implied link automatically realized ! proximal epiphysis is_a: UBERON:0004382 ! implied link automatically realized ! epiphysis of humerus relationship: part_of UBERON:0000976 intersection_of: UBERON:0004380 ! proximal epiphysis intersection_of: part_of UBERON:0000976 ! humerus [Term] id: UBERON:0004412 name: proximal epiphysis of femur def: "A proximal epiphysis that is part of a femur [Obol]." [OBOL:automatic] synonym: "proximal femoral epiphysis" EXACT [OBOL:automatic, UBERON:cjm] xref: FMA:32841 xref: SCTID:244702009 is_a: UBERON:0004380 ! implied link automatically realized ! proximal epiphysis is_a: UBERON:0004384 ! implied link automatically realized ! epiphysis of femur relationship: part_of UBERON:0000981 intersection_of: UBERON:0004380 ! proximal epiphysis intersection_of: part_of UBERON:0000981 ! femur [Term] id: UBERON:0004413 name: proximal epiphysis of radius def: "A proximal epiphysis that is part of a radius [Obol]." [OBOL:automatic] synonym: "proximal end of radius" EXACT [FMA:39780] synonym: "proximal radial epiphysis" EXACT [OBOL:automatic, UBERON:cjm] synonym: "upper end of radius" EXACT [FMA:39780] xref: FMA:39780 xref: SCTID:280029000 is_a: UBERON:0004380 ! implied link automatically realized ! proximal epiphysis is_a: UBERON:0004385 ! implied link automatically realized ! epiphysis of radius relationship: part_of UBERON:0001423 intersection_of: UBERON:0004380 ! proximal epiphysis intersection_of: part_of UBERON:0001423 ! radius [Term] id: UBERON:0004414 name: proximal epiphysis of phalanx of finger def: "A proximal epiphysis that is part of a phalanx of finger [Obol]." [OBOL:automatic] synonym: "basal epiphysis of phalanx of finger" EXACT [FMA:226482] synonym: "base of phalanx of finger" EXACT [FMA:226482] synonym: "basis phalangis manus" EXACT [FMA:226482, FMA:TA] xref: FMA:226482 xref: SCTID:272704004 is_a: UBERON:0004387 ! implied link automatically realized ! epiphysis of phalanx of finger is_a: UBERON:0004447 ! implied link automatically realized ! proximal epiphysis of phalanx relationship: part_of UBERON:0001436 intersection_of: UBERON:0004380 ! proximal epiphysis intersection_of: part_of UBERON:0001436 ! phalanx of finger [Term] id: UBERON:0004415 name: proximal epiphysis of metatarsal bone def: "A proximal epiphysis that is part of a metatarsal bone [Obol]." [OBOL:automatic] synonym: "base of metatarsal bone" EXACT [FMA:33817] synonym: "basis ossis metatarsi" EXACT [FMA:33817, FMA:TA] synonym: "proximal end of metatarsal bone" EXACT [FMA:33817] synonym: "upper end of metatarsal bone" EXACT [FMA:33817] xref: FMA:33817 xref: SCTID:119545008 is_a: UBERON:0004380 ! implied link automatically realized ! proximal epiphysis is_a: UBERON:0004389 ! implied link automatically realized ! epiphysis of metatarsal bone relationship: part_of UBERON:0001448 intersection_of: UBERON:0004380 ! proximal epiphysis intersection_of: part_of UBERON:0001448 ! metatarsal bone [Term] id: UBERON:0004416 name: proximal epiphysis of metacarpal bone def: "A proximal epiphysis that is part of a metacarpal bone [Obol]." [OBOL:automatic] synonym: "base of metacarpal bone" EXACT [FMA:33795] synonym: "basis ossis metacarpi" EXACT [FMA:33795, FMA:TA] synonym: "metacarpal bone base" EXACT [FMA:33795] synonym: "proximal end of metacarpal bone" EXACT [FMA:33795] synonym: "upper end of metacarpal bone" EXACT [FMA:33795] xref: FMA:33795 xref: SCTID:272695001 is_a: UBERON:0004380 ! implied link automatically realized ! proximal epiphysis is_a: UBERON:0004390 ! implied link automatically realized ! epiphysis of metacarpal bone relationship: part_of UBERON:0002374 intersection_of: UBERON:0004380 ! proximal epiphysis intersection_of: part_of UBERON:0002374 ! metacarpal bone [Term] id: UBERON:0004417 name: proximal epiphysis of phalanx of thumb def: "A proximal epiphysis that is part of a hand digit 1 phalanx [Obol]." [OBOL:automatic] synonym: "basal epiphysis of phalanx of thumb" EXACT [FMA:37489] synonym: "base of phalanx of first digit of hand" EXACT [FMA:37489] synonym: "base of phalanx of thumb" EXACT [FMA:37489] xref: FMA:37489 xref: SCTID:272700008 is_a: UBERON:0004414 ! implied link automatically realized ! proximal epiphysis of phalanx of finger relationship: part_of UBERON:0003620 intersection_of: UBERON:0004380 ! proximal epiphysis intersection_of: part_of UBERON:0003620 ! hand digit 1 phalanx [Term] id: UBERON:0004418 name: proximal epiphysis of phalanx of index finger def: "A proximal epiphysis that is part of a hand digit 2 phalanx [Obol]." [OBOL:automatic] synonym: "basal epiphysis of phalanx of index finger" EXACT [FMA:37498] synonym: "base of phalanx of index finger" EXACT [FMA:37498] synonym: "base of phalanx of second digit of hand" EXACT [FMA:37498] synonym: "base of phalanx of second finger" EXACT [FMA:37498] xref: FMA:37498 xref: SCTID:368307004 is_a: UBERON:0004414 ! implied link automatically realized ! proximal epiphysis of phalanx of finger relationship: part_of UBERON:0003636 intersection_of: UBERON:0004380 ! proximal epiphysis intersection_of: part_of UBERON:0003636 ! hand digit 2 phalanx [Term] id: UBERON:0004419 name: proximal epiphysis of phalanx of middle finger def: "A proximal epiphysis that is part of a hand digit 3 phalanx [Obol]." [OBOL:automatic] synonym: "basal epiphysis of phalanx of middle finger" EXACT [FMA:37510] synonym: "base of phalanx of middle finger" EXACT [FMA:37510] synonym: "base of phalanx of third digit of hand" EXACT [FMA:37510] synonym: "base of phalanx of third finger" EXACT [FMA:37510] xref: FMA:37510 xref: SCTID:181997000 is_a: UBERON:0004414 ! implied link automatically realized ! proximal epiphysis of phalanx of finger relationship: part_of UBERON:0003637 intersection_of: UBERON:0004380 ! proximal epiphysis intersection_of: part_of UBERON:0003637 ! hand digit 3 phalanx [Term] id: UBERON:0004420 name: proximal epiphysis of phalanx of ring finger def: "A proximal epiphysis that is part of a hand digit 4 phalanx [Obol]." [OBOL:automatic] synonym: "basal epiphysis of phalanx of ring finger" EXACT [FMA:37522] synonym: "base of phalanx of fourth digit of hand" EXACT [FMA:37522] synonym: "base of phalanx of fourth finger" EXACT [FMA:37522] synonym: "base of phalanx of ring finger" EXACT [FMA:37522] xref: FMA:37522 xref: SCTID:368337008 is_a: UBERON:0004414 ! implied link automatically realized ! proximal epiphysis of phalanx of finger relationship: part_of UBERON:0003638 intersection_of: UBERON:0004380 ! proximal epiphysis intersection_of: part_of UBERON:0003638 ! hand digit 4 phalanx [Term] id: UBERON:0004421 name: proximal epiphysis of phalanx of little finger def: "A proximal epiphysis that is part of a hand digit 5 phalanx [Obol]." [OBOL:automatic] synonym: "basal epiphysis of phalanx of fifth finger" EXACT [FMA:37534] synonym: "basal epiphysis of phalanx of little finger" EXACT [FMA:37534] synonym: "base of phalanx of fifth digit of hand" EXACT [FMA:37534] synonym: "base of phalanx of fifth finger" EXACT [FMA:37534] synonym: "base of phalanx of little finger" EXACT [FMA:37534] xref: FMA:37534 xref: SCTID:368351008 is_a: UBERON:0004414 ! implied link automatically realized ! proximal epiphysis of phalanx of finger relationship: part_of UBERON:0003639 intersection_of: UBERON:0004380 ! proximal epiphysis intersection_of: part_of UBERON:0003639 ! hand digit 5 phalanx [Term] id: UBERON:0004422 name: proximal epiphysis of first metacarpal bone def: "A proximal epiphysis that is part of a metacarpal bone of digit 1 [Obol]." [OBOL:automatic] synonym: "base of first metacarpal bone" EXACT [FMA:42788] synonym: "first metacarpal bone base" EXACT [FMA:42788] xref: FMA:42788 xref: SCTID:181978000 is_a: UBERON:0004391 ! implied link automatically realized ! epiphysis of first metacarpal bone is_a: UBERON:0004416 ! implied link automatically realized ! proximal epiphysis of metacarpal bone is_a: UBERON:0004417 ! implied link automatically realized ! proximal epiphysis of phalanx of thumb relationship: part_of UBERON:0003645 intersection_of: UBERON:0004380 ! proximal epiphysis intersection_of: part_of UBERON:0003645 ! metacarpal bone of digit 1 [Term] id: UBERON:0004423 name: proximal epiphysis of second metacarpal bone def: "A proximal epiphysis that is part of a metacarpal bone of digit 2 [Obol]." [OBOL:automatic] synonym: "base of second metacarpal bone" EXACT [FMA:42791] synonym: "proximal end of second metacarpal bone" EXACT [FMA:42791] synonym: "second metacarpal bone base" EXACT [FMA:42791] xref: FMA:42791 xref: SCTID:263461004 is_a: UBERON:0004392 ! implied link automatically realized ! epiphysis of second metacarpal bone is_a: UBERON:0004416 ! implied link automatically realized ! proximal epiphysis of metacarpal bone is_a: UBERON:0004418 ! implied link automatically realized ! proximal epiphysis of phalanx of index finger relationship: part_of UBERON:0003646 intersection_of: UBERON:0004380 ! proximal epiphysis intersection_of: part_of UBERON:0003646 ! metacarpal bone of digit 2 [Term] id: UBERON:0004424 name: proximal epiphysis of third metacarpal bone def: "A proximal epiphysis that is part of a metacarpal bone of digit 3 [Obol]." [OBOL:automatic] synonym: "base of third metacarpal bone" EXACT [FMA:42794] synonym: "proximal end of third metacarpal bone" EXACT [FMA:42794] synonym: "third metacarpal bone base" EXACT [FMA:42794] xref: FMA:42794 xref: SCTID:263465008 is_a: UBERON:0004393 ! implied link automatically realized ! epiphysis of third metacarpal bone is_a: UBERON:0004416 ! implied link automatically realized ! proximal epiphysis of metacarpal bone is_a: UBERON:0004419 ! implied link automatically realized ! proximal epiphysis of phalanx of middle finger relationship: part_of UBERON:0003647 intersection_of: UBERON:0004380 ! proximal epiphysis intersection_of: part_of UBERON:0003647 ! metacarpal bone of digit 3 [Term] id: UBERON:0004425 name: proximal epiphysis of fourth metacarpal bone def: "A proximal epiphysis that is part of a metacarpal bone of digit 4 [Obol]." [OBOL:automatic] synonym: "base of fourth metacarpal bone" EXACT [FMA:42797] synonym: "fourth metacarpal bone base" EXACT [FMA:42797] synonym: "proximal end of fourth metacarpal bone" EXACT [FMA:42797] xref: FMA:42797 xref: SCTID:263469002 is_a: UBERON:0004394 ! implied link automatically realized ! epiphysis of fourth metacarpal bone is_a: UBERON:0004416 ! implied link automatically realized ! proximal epiphysis of metacarpal bone is_a: UBERON:0004420 ! implied link automatically realized ! proximal epiphysis of phalanx of ring finger relationship: part_of UBERON:0003648 intersection_of: UBERON:0004380 ! proximal epiphysis intersection_of: part_of UBERON:0003648 ! metacarpal bone of digit 4 [Term] id: UBERON:0004426 name: proximal epiphysis of fifth metacarpal bone def: "A proximal epiphysis that is part of a metacarpal bone of digit 5 [Obol]." [OBOL:automatic] synonym: "base of fifth metacarpal bone" EXACT [FMA:42800] synonym: "fifth metacarpal bone base" EXACT [FMA:42800] synonym: "proximal end of fifth metacarpal bone" EXACT [FMA:42800] xref: FMA:42800 xref: SCTID:263473004 is_a: UBERON:0004416 ! implied link automatically realized ! proximal epiphysis of metacarpal bone is_a: UBERON:0004421 ! implied link automatically realized ! proximal epiphysis of phalanx of little finger relationship: part_of UBERON:0003649 intersection_of: UBERON:0004380 ! proximal epiphysis intersection_of: part_of UBERON:0003649 ! metacarpal bone of digit 5 [Term] id: UBERON:0004427 name: proximal epiphysis of first metatarsal bone def: "A proximal epiphysis that is part of a metatarsal bone of digit 1 [Obol]." [OBOL:automatic] synonym: "base of first metatarsal bone" EXACT [FMA:42963] synonym: "proximal end of first metatarsal bone" EXACT [FMA:42963] xref: FMA:42963 xref: SCTID:182124002 is_a: UBERON:0004395 ! implied link automatically realized ! epiphysis of first metatarsal bone is_a: UBERON:0004415 ! implied link automatically realized ! proximal epiphysis of metatarsal bone is_a: UBERON:0004447 ! implied link automatically realized ! proximal epiphysis of phalanx relationship: part_of UBERON:0003650 intersection_of: UBERON:0004380 ! proximal epiphysis intersection_of: part_of UBERON:0003650 ! metatarsal bone of digit 1 [Term] id: UBERON:0004428 name: proximal epiphysis of second metatarsal bone def: "A proximal epiphysis that is part of a metatarsal bone of digit 2 [Obol]." [OBOL:automatic] synonym: "base of second metatarsal bone" EXACT [FMA:42964] synonym: "proximal end of second metatarsal bone" EXACT [FMA:42964] xref: FMA:42964 xref: SCTID:182130002 is_a: UBERON:0004396 ! implied link automatically realized ! epiphysis of second metatarsal bone is_a: UBERON:0004415 ! implied link automatically realized ! proximal epiphysis of metatarsal bone is_a: UBERON:0004447 ! implied link automatically realized ! proximal epiphysis of phalanx relationship: part_of UBERON:0003651 intersection_of: UBERON:0004380 ! proximal epiphysis intersection_of: part_of UBERON:0003651 ! metatarsal bone of digit 2 [Term] id: UBERON:0004429 name: proximal epiphysis of third metatarsal bone def: "A proximal epiphysis that is part of a metatarsal bone of digit 3 [Obol]." [OBOL:automatic] synonym: "base of third metatarsal bone" EXACT [FMA:42965] synonym: "proximal end of third metatarsal bone" EXACT [FMA:42965] xref: FMA:42965 xref: SCTID:182135007 is_a: UBERON:0004397 ! implied link automatically realized ! epiphysis of third metatarsal bone is_a: UBERON:0004415 ! implied link automatically realized ! proximal epiphysis of metatarsal bone is_a: UBERON:0004447 ! implied link automatically realized ! proximal epiphysis of phalanx relationship: part_of UBERON:0003652 intersection_of: UBERON:0004380 ! proximal epiphysis intersection_of: part_of UBERON:0003652 ! metatarsal bone of digit 3 [Term] id: UBERON:0004430 name: proximal epiphysis of fourth metatarsal bone def: "A proximal epiphysis that is part of a metatarsal bone of digit 4 [Obol]." [OBOL:automatic] synonym: "base of fourth metatarsal bone" EXACT [FMA:42966] synonym: "proximal end of fourth metatarsal bone" EXACT [FMA:42966] xref: FMA:42966 xref: SCTID:182140004 is_a: UBERON:0004398 ! implied link automatically realized ! epiphysis of fourth metatarsal bone is_a: UBERON:0004415 ! implied link automatically realized ! proximal epiphysis of metatarsal bone is_a: UBERON:0004447 ! implied link automatically realized ! proximal epiphysis of phalanx relationship: part_of UBERON:0003653 intersection_of: UBERON:0004380 ! proximal epiphysis intersection_of: part_of UBERON:0003653 ! metatarsal bone of digit 4 [Term] id: UBERON:0004431 name: proximal epiphysis of fifth metatarsal bone def: "A proximal epiphysis that is part of a metatarsal bone of digit 5 [Obol]." [OBOL:automatic] synonym: "base of fifth metatarsal bone" EXACT [FMA:42967] synonym: "proximal end of fifth metatarsal bone" EXACT [FMA:42967] xref: FMA:42967 xref: SCTID:182145009 is_a: UBERON:0004399 ! implied link automatically realized ! epiphysis of fifth metatarsal bone is_a: UBERON:0004415 ! implied link automatically realized ! proximal epiphysis of metatarsal bone is_a: UBERON:0004447 ! implied link automatically realized ! proximal epiphysis of phalanx relationship: part_of UBERON:0003654 intersection_of: UBERON:0004380 ! proximal epiphysis intersection_of: part_of UBERON:0003654 ! metatarsal bone of digit 5 [Term] id: UBERON:0004432 name: proximal epiphysis of distal phalanx of index finger def: "A proximal epiphysis that is part of a distal phalanx of hand digit 2 [Obol]." [OBOL:automatic] synonym: "basal epiphysis of distal phalanx of index finger" EXACT [FMA:37505] synonym: "base of distal phalanx of index finger" EXACT [FMA:37505] synonym: "base of distal phalanx of second digit of hand" EXACT [FMA:37505] synonym: "base of distal phalanx of second finger" EXACT [FMA:37505] xref: FMA:37505 xref: SCTID:263445001 is_a: UBERON:0004418 ! implied link automatically realized ! proximal epiphysis of phalanx of index finger relationship: part_of UBERON:0004311 intersection_of: UBERON:0004380 ! proximal epiphysis intersection_of: part_of UBERON:0004311 ! distal phalanx of hand digit 2 [Term] id: UBERON:0004433 name: proximal epiphysis of distal phalanx of middle finger def: "A proximal epiphysis that is part of a distal phalanx of hand digit 3 [Obol]." [OBOL:automatic] synonym: "base of distal phalanx of middle finger" EXACT [FMA:37517] synonym: "base of distal phalanx of third digit of hand" EXACT [FMA:37517] synonym: "base of distal phalanx of third finger" EXACT [FMA:37517] xref: FMA:37517 xref: SCTID:263446000 is_a: UBERON:0004419 ! implied link automatically realized ! proximal epiphysis of phalanx of middle finger relationship: part_of UBERON:0004312 intersection_of: UBERON:0004380 ! proximal epiphysis intersection_of: part_of UBERON:0004312 ! distal phalanx of hand digit 3 [Term] id: UBERON:0004434 name: proximal epiphysis of distal phalanx of ring finger def: "A proximal epiphysis that is part of a distal phalanx of hand digit 4 [Obol]." [OBOL:automatic] synonym: "basal epiphysis of distal phalanx of fourth finger" EXACT [FMA:37529] synonym: "basal epiphysis of distal phalanx of ring finger" EXACT [FMA:37529] synonym: "base of distal phalanx of fourth digit of hand" EXACT [FMA:37529] synonym: "base of distal phalanx of fourth finger" EXACT [FMA:37529] synonym: "base of distal phalanx of ring finger" EXACT [FMA:37529] xref: FMA:37529 xref: SCTID:263447009 is_a: UBERON:0004420 ! implied link automatically realized ! proximal epiphysis of phalanx of ring finger relationship: part_of UBERON:0004313 intersection_of: UBERON:0004380 ! proximal epiphysis intersection_of: part_of UBERON:0004313 ! distal phalanx of hand digit 4 [Term] id: UBERON:0004435 name: proximal epiphysis of distal phalanx of little finger def: "A proximal epiphysis that is part of a distal phalanx of hand digit 5 [Obol]." [OBOL:automatic] synonym: "basal epiphysis of distal phalanx of fifth finger" EXACT [FMA:37541] synonym: "basal epiphysis of distal phalanx of little finger" EXACT [FMA:37541] synonym: "base of distal phalanx of fifth digit of hand" EXACT [FMA:37541] synonym: "base of distal phalanx of fifth finger" EXACT [FMA:37541] synonym: "base of distal phalanx of little finger" EXACT [FMA:37541] xref: FMA:37541 xref: SCTID:263448004 is_a: UBERON:0004421 ! implied link automatically realized ! proximal epiphysis of phalanx of little finger relationship: part_of UBERON:0004314 intersection_of: UBERON:0004380 ! proximal epiphysis intersection_of: part_of UBERON:0004314 ! distal phalanx of hand digit 5 [Term] id: UBERON:0004436 name: proximal epiphysis of middle phalanx of index finger def: "A proximal epiphysis that is part of a middle phalanx of hand digit 2 [Obol]." [OBOL:automatic] synonym: "basal epiphysis of middle phalanx of index finger" EXACT [FMA:37502] synonym: "base of middle phalanx of index finger" EXACT [FMA:37502] synonym: "base of middle phalanx of second digit of hand" EXACT [FMA:37502] synonym: "base of middle phalanx of second finger" EXACT [FMA:37502] xref: FMA:37502 xref: SCTID:263428006 is_a: UBERON:0004418 ! implied link automatically realized ! proximal epiphysis of phalanx of index finger relationship: part_of UBERON:0004320 intersection_of: UBERON:0004380 ! proximal epiphysis intersection_of: part_of UBERON:0004320 ! middle phalanx of hand digit 2 [Term] id: UBERON:0004437 name: proximal epiphysis of middle phalanx of middle finger def: "A proximal epiphysis that is part of a middle phalanx of hand digit 3 [Obol]." [OBOL:automatic] synonym: "basal epiphysis of middle phalanx of middle finger" EXACT [FMA:37514] synonym: "base of middle phalanx of middle finger" EXACT [FMA:37514] synonym: "base of middle phalanx of third digit of hand" EXACT [FMA:37514] synonym: "base of middle phalanx of third finger" EXACT [FMA:37514] xref: FMA:37514 xref: SCTID:263429003 is_a: UBERON:0004419 ! implied link automatically realized ! proximal epiphysis of phalanx of middle finger relationship: part_of UBERON:0004321 intersection_of: UBERON:0004380 ! proximal epiphysis intersection_of: part_of UBERON:0004321 ! middle phalanx of hand digit 3 [Term] id: UBERON:0004438 name: proximal epiphysis of middle phalanx of ring finger def: "A proximal epiphysis that is part of a middle phalanx of hand digit 4 [Obol]." [OBOL:automatic] synonym: "basal epiphysis of middle phalanx of fourth finger" EXACT [FMA:37526] synonym: "basal epiphysis of middle phalanx of ring finger" EXACT [FMA:37526] synonym: "base of middle phalanx of fourth digit of hand" EXACT [FMA:37526] synonym: "base of middle phalanx of fourth finger" EXACT [FMA:37526] synonym: "base of middle phalanx of ring finger" EXACT [FMA:37526] xref: FMA:37526 xref: SCTID:263430008 is_a: UBERON:0004420 ! implied link automatically realized ! proximal epiphysis of phalanx of ring finger relationship: part_of UBERON:0004322 intersection_of: UBERON:0004380 ! proximal epiphysis intersection_of: part_of UBERON:0004322 ! middle phalanx of hand digit 4 [Term] id: UBERON:0004439 name: proximal epiphysis of middle phalanx of little finger def: "A proximal epiphysis that is part of a middle phalanx of hand digit 5 [Obol]." [OBOL:automatic] synonym: "basal epiphysis of middle phalanx of fifth finger" EXACT [FMA:37538] synonym: "basal epiphysis of middle phalanx of little finger" EXACT [FMA:37538] synonym: "base of middle phalanx of fifth digit of hand" EXACT [FMA:37538] synonym: "base of middle phalanx of fifth finger" EXACT [FMA:37538] synonym: "base of middle phalanx of little finger" EXACT [FMA:37538] xref: FMA:37538 xref: SCTID:263431007 is_a: UBERON:0004421 ! implied link automatically realized ! proximal epiphysis of phalanx of little finger relationship: part_of UBERON:0004323 intersection_of: UBERON:0004380 ! proximal epiphysis intersection_of: part_of UBERON:0004323 ! middle phalanx of hand digit 5 [Term] id: UBERON:0004440 name: proximal epiphysis of proximal phalanx of index finger def: "A proximal epiphysis that is part of a proximal phalanx of hand digit 2 [Obol]." [OBOL:automatic] synonym: "base of proximal phalanx of index finger" EXACT [FMA:37499] synonym: "base of proximal phalanx of second digit of hand" EXACT [FMA:37499] synonym: "base of proximal phalanx of second finger" EXACT [FMA:37499] xref: FMA:37499 xref: SCTID:263412001 is_a: UBERON:0004418 ! implied link automatically realized ! proximal epiphysis of phalanx of index finger relationship: part_of UBERON:0004328 intersection_of: UBERON:0004380 ! proximal epiphysis intersection_of: part_of UBERON:0004328 ! proximal phalanx of hand digit 2 [Term] id: UBERON:0004441 name: proximal epiphysis of proximal phalanx of middle finger def: "A proximal epiphysis that is part of a proximal phalanx of hand digit 3 [Obol]." [OBOL:automatic] synonym: "basal epiphysis of proximal phalanx of middle finger" EXACT [FMA:37511] synonym: "base of proximal phalanx of middle finger" EXACT [FMA:37511] synonym: "base of proximal phalanx of third digit of hand" EXACT [FMA:37511] synonym: "base of proximal phalanx of third finger" EXACT [FMA:37511] xref: FMA:37511 xref: SCTID:263413006 is_a: UBERON:0004419 ! implied link automatically realized ! proximal epiphysis of phalanx of middle finger relationship: part_of UBERON:0004329 intersection_of: UBERON:0004380 ! proximal epiphysis intersection_of: part_of UBERON:0004329 ! proximal phalanx of hand digit 3 [Term] id: UBERON:0004442 name: proximal epiphysis of proximal phalanx of ring finger def: "A proximal epiphysis that is part of a proximal phalanx of hand digit 4 [Obol]." [OBOL:automatic] synonym: "basal epiphysis of proximal phalanx of fourth finger" EXACT [FMA:37523] synonym: "basal epiphysis of proximal phalanx of ring finger" EXACT [FMA:37523] synonym: "base of proximal phalanx of fourth digit of hand" EXACT [FMA:37523] synonym: "base of proximal phalanx of fourth finger" EXACT [FMA:37523] synonym: "base of proximal phalanx of ring finger" EXACT [FMA:37523] xref: FMA:37523 xref: SCTID:263414000 is_a: UBERON:0004420 ! implied link automatically realized ! proximal epiphysis of phalanx of ring finger relationship: part_of UBERON:0004330 intersection_of: UBERON:0004380 ! proximal epiphysis intersection_of: part_of UBERON:0004330 ! proximal phalanx of hand digit 4 [Term] id: UBERON:0004443 name: proximal epiphysis of proximal phalanx of little finger def: "A proximal epiphysis that is part of a proximal phalanx of hand digit 5 [Obol]." [OBOL:automatic] synonym: "basal epiphysis of proximal phalanx of little finger" EXACT [FMA:37535] synonym: "base of proximal phalanx of fifth digit of hand" EXACT [FMA:37535] synonym: "base of proximal phalanx of fifth finger" EXACT [FMA:37535] synonym: "base of proximal phalanx of little finger" EXACT [FMA:37535] xref: FMA:37535 xref: SCTID:263415004 is_a: UBERON:0004421 ! implied link automatically realized ! proximal epiphysis of phalanx of little finger relationship: part_of UBERON:0004331 intersection_of: UBERON:0004380 ! proximal epiphysis intersection_of: part_of UBERON:0004331 ! proximal phalanx of hand digit 5 [Term] id: UBERON:0004444 name: proximal epiphysis of distal phalanx of thumb def: "A proximal epiphysis that is part of a distal phalanx of hand digit 1 [Obol]." [OBOL:automatic] synonym: "base of distal phalanx of thumb" EXACT [FMA:37493] xref: FMA:37493 xref: SCTID:182008001 is_a: UBERON:0004417 ! implied link automatically realized ! proximal epiphysis of phalanx of thumb relationship: part_of UBERON:0004337 intersection_of: UBERON:0004380 ! proximal epiphysis intersection_of: part_of UBERON:0004337 ! distal phalanx of hand digit 1 [Term] id: UBERON:0004445 name: proximal epiphysis of proximal phalanx of thumb def: "A proximal epiphysis that is part of a proximal phalanx of hand digit 1 [Obol]." [OBOL:automatic] synonym: "basal epiphysis of proximal phalanx of thumb" EXACT [FMA:37490] synonym: "base of proximal phalanx of thumb" EXACT [FMA:37490] xref: FMA:37490 xref: SCTID:181993001 is_a: UBERON:0004417 ! implied link automatically realized ! proximal epiphysis of phalanx of thumb relationship: part_of UBERON:0004338 intersection_of: UBERON:0004380 ! proximal epiphysis intersection_of: part_of UBERON:0004338 ! proximal phalanx of hand digit 1 [Term] id: UBERON:0004446 name: epiphysis of phalanx def: "An epiphysis that is part of a phalanx [Obol]." [OBOL:automatic] xref: SCTID:280033007 is_a: UBERON:0001437 ! implied link automatically realized ! epiphysis relationship: part_of UBERON:0003221 intersection_of: UBERON:0001437 ! epiphysis intersection_of: part_of UBERON:0003221 ! phalanx [Term] id: UBERON:0004447 name: proximal epiphysis of phalanx def: "A proximal epiphysis that is part of a phalanx [Obol]." [OBOL:automatic] is_a: UBERON:0004380 ! implied link automatically realized ! proximal epiphysis is_a: UBERON:0004446 ! implied link automatically realized ! epiphysis of phalanx relationship: part_of UBERON:0003221 intersection_of: UBERON:0004380 ! proximal epiphysis intersection_of: part_of UBERON:0003221 ! phalanx [Term] id: UBERON:0004448 name: distal epiphysis of phalanx def: "A distal epiphysis that is part of a phalanx [Obol]." [OBOL:automatic] is_a: UBERON:0004379 ! implied link automatically realized ! distal epiphysis is_a: UBERON:0004446 ! implied link automatically realized ! epiphysis of phalanx relationship: part_of UBERON:0003221 intersection_of: UBERON:0004379 ! distal epiphysis intersection_of: part_of UBERON:0003221 ! phalanx [Term] id: UBERON:0004449 name: cerebral artery def: "One of three main pairs of arteries and their branches, which irrigate the cerebrum of the brain." [Wikipedia:Cerebral_artery] xref: AAO:0010493 xref: EHDAA:5294 xref: EHDAA2:0000233 xref: EMAPA:18613 xref: GAID:484 xref: MA:0002562 xref: MESH:A.07.231.114.228 xref: ncithesaurus:Cerebral_Artery xref: SCTID:181308008 xref: XAO:0000367 is_a: UBERON:0001637 ! artery relationship: continuous_with UBERON:0001532 ! internal carotid artery relationship: part_of UBERON:0003709 ! circle of Willis [Term] id: UBERON:0004450 name: gastric vein xref: AAO:0011046 xref: MA:0002128 xref: ncithesaurus:Gastric_Vein xref: SCTID:281060006 xref: XAO:0000389 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0004451 name: presacral vertebra xref: MA:0002869 xref: XAO:0003077 is_a: UBERON:0002412 ! vertebra relationship: part_of UBERON:0001130 ! vertebral column [Term] id: UBERON:0004452 name: carpus synonym: "fore basipodium" EXACT [MA:th] synonym: "fore mesopodium" EXACT [MA:th] xref: EMAPA:18485 xref: EMAPA:19122 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/58/Carpus.svg/200px-Carpus.svg.png xref: MA:0000040 xref: OG:0001161 is_a: UBERON:0006716 ! implied link automatically realized ! mesopodium is_a: UBERON:0008785 ! implied link automatically realized ! upper limb segment relationship: part_of UBERON:0002398 intersection_of: UBERON:0006716 ! mesopodium intersection_of: part_of UBERON:0002398 ! hand [Term] id: UBERON:0004453 name: metacarpus def: "The metacarpus is the intermediate part of the hand skeleton that is located between the phalanges (bones of the fingers) distally and the carpus which forms the connection to the forearm. The metacarpus consists of metacarpal bones. The metacarpals form a transverse arch to which the rigid row of distal carpal bones are fixed. The peripheral metacarpals (those of the thumb and little finger) form the sides of the cup of the palmar gutter and as they are brought together they deepen this concavity. The index metacarpal is the most firmly fixed, while the thumb metacarpal articulates with the trapezium and acts independently from the others. The middle metacarpals are tightly united to the carpus by intrinsic interlocking bone elements at their bases. The ring metacarpal forms a transitional element of the semi-independent last metacarpal. [WP,unvetted]." [Wikipedia:Metacarpus] comment: Note that mammalian and non-mammalian AOs differ in whether they consider this a part of the skeleton synonym: "fore metapodium" EXACT [AAO:0000946, http://en.wiktionary.org/wiki/metapodial, MA:th] xref: AAO:0000946 xref: EMAPA:18475 xref: EMAPA:18477 xref: EMAPA:18479 xref: EMAPA:18481 xref: EMAPA:18483 xref: EMAPA:19112 xref: EMAPA:19114 xref: EMAPA:19116 xref: EMAPA:19118 xref: EMAPA:19120 xref: GAID:184 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2f/Metacarpals_numbered-en.svg/200px-Metacarpals_numbered-en.svg.png xref: MA:0000042 xref: MESH:A.02.835.232.087.535 xref: XAO:0003208 is_a: UBERON:0008785 ! implied link automatically realized ! upper limb segment is_a: UBERON:0009877 ! implied link automatically realized ! metapodium relationship: part_of UBERON:0002398 intersection_of: UBERON:0009877 ! metapodium intersection_of: part_of UBERON:0002398 ! hand [Term] id: UBERON:0004454 name: tarsus comment: note that this term refers to the limb segment. See also: tarsal bones and tarsal skeleton synonym: "hind basipodium" RELATED [MA:th] synonym: "hind mesopodium" RELATED [MA:th] xref: EMAPA:18500 xref: EMAPA:19133 xref: GAID:1223 xref: MA:0000050 xref: MESH:A.13.473.821 xref: OG:0001160 is_a: UBERON:0006716 ! implied link automatically realized ! mesopodium is_a: UBERON:0008784 ! implied link automatically realized ! lower limb segment relationship: part_of UBERON:0002387 intersection_of: UBERON:0006716 ! mesopodium intersection_of: part_of UBERON:0002387 ! foot [Term] id: UBERON:0004455 name: neurula alt_id: UBERON:0007013 def: "An embryo at the neurula stage." [GOC:cjm] synonym: "neurula embryo" EXACT [BILA:0000061] xref: BILA:0000061 xref: BTO:0001766 xref: ncithesaurus:Neurula is_a: UBERON:0000922 ! embryo relationship: existence_starts_and_ends_during UBERON:0000110 intersection_of: UBERON:0000468 ! multi-cellular organism intersection_of: existence_starts_and_ends_during UBERON:0000110 ! neurula stage [Term] id: UBERON:0004456 name: entire sense organ system def: "Sum of all sensory systems in an organism." [] comment: note the distinct between entire sensory system and individual system. this reconciles is_a and part_of distinctions between ssAOs subset: uberon_slim synonym: "sense organ system" EXACT [FMA:78499] xref: FMA:78499 is_a: UBERON:0000467 ! anatomical system disjoint_from: UBERON:0000949 ! endocrine system disjoint_from: UBERON:0000990 ! reproductive system disjoint_from: UBERON:0001004 ! respiratory system disjoint_from: UBERON:0001007 ! digestive system disjoint_from: UBERON:0001008 ! excretory system disjoint_from: UBERON:0001009 ! circulatory system disjoint_from: UBERON:0001016 ! nervous system disjoint_from: UBERON:0001033 ! gustatory system disjoint_from: UBERON:0001434 ! skeletal system disjoint_from: UBERON:0002204 ! musculoskeletal system disjoint_from: UBERON:0002294 ! biliary system disjoint_from: UBERON:0002330 ! exocrine system disjoint_from: UBERON:0002390 ! hematopoietic system disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system relationship: overlaps UBERON:0001016 ! nervous system [Term] id: UBERON:0004457 name: cavity lining xref: MA:0002448 is_a: UBERON:0004458 ! implied link automatically realized ! body cavity or lining is_a: UBERON:0004923 ! organ component layer [Term] id: UBERON:0004458 name: body cavity or lining xref: MA:0000005 is_a: UBERON:0001062 ! anatomical entity union_of: UBERON:0002323 ! body cavity union_of: UBERON:0004457 ! cavity lining [Term] id: UBERON:0004461 name: musculature of head def: "A musculature that is part of a head [Obol]." [OBOL:automatic] synonym: "head musculature" EXACT [FMA:71287] synonym: "muscle group of head" EXACT [FMA:71287] synonym: "muscles of head" EXACT [FMA:71287] synonym: "musculi capitis" EXACT [FMA:71287, FMA:TA] xref: FMA:71287 is_a: UBERON:0001015 ! implied link automatically realized ! musculature relationship: part_of UBERON:0000033 intersection_of: UBERON:0001015 ! musculature intersection_of: part_of UBERON:0000033 ! head [Term] id: UBERON:0004462 name: musculature of body wall def: "A musculature that is part of a body wall [Obol]." [OBOL:automatic] synonym: "body wall musculature" EXACT [FMA:86931] xref: FMA:86931 xref: WBbt:0005813 is_a: UBERON:0004479 ! implied link automatically realized ! musculature of trunk relationship: part_of UBERON:0000309 intersection_of: UBERON:0001015 ! musculature intersection_of: part_of UBERON:0000309 ! body wall [Term] id: UBERON:0004463 name: musculature of hindlimb stylopod def: "A musculature that is part of a hindlimb stylopod (upper leg / thigh)[Obol]." [OBOL:automatic] synonym: "muscle group of thigh" EXACT [FMA:50208] synonym: "musculature of thigh" EXACT [FMA:50208] synonym: "set of muscles of thigh" EXACT [FMA:50208] synonym: "thigh musculature" EXACT [FMA:50208] xref: FMA:50208 is_a: UBERON:0004466 ! implied link automatically realized ! musculature of leg relationship: part_of UBERON:0000376 intersection_of: UBERON:0001015 ! musculature intersection_of: part_of UBERON:0000376 ! hindlimb stylopod [Term] id: UBERON:0004464 name: musculature of thorax def: "A musculature that is part of a thorax [Obol]." [OBOL:automatic] comment: note BTO and FMA do not mean precisely the same thing here synonym: "muscle group of thorax" EXACT [FMA:71293] synonym: "muscles of thorax" EXACT [FMA:71293] synonym: "musculi thoracis" EXACT [FMA:71293, FMA:TA] synonym: "thoracic musculature" EXACT [FMA:71293] xref: BTO:0000508 xref: FMA:71293 is_a: UBERON:0004479 ! implied link automatically realized ! musculature of trunk relationship: part_of UBERON:0000915 intersection_of: UBERON:0001015 ! musculature intersection_of: part_of UBERON:0000915 ! thoracic segment of trunk [Term] id: UBERON:0004465 name: musculature of neck def: "A musculature that is part of a neck [Obol]." [OBOL:automatic] synonym: "muscle group of neck" EXACT [FMA:71290] synonym: "muscles of neck" EXACT [FMA:71290] synonym: "musculi cervicis" EXACT [FMA:71290, FMA:TA] synonym: "musculi colli" EXACT [FMA:71290, FMA:TA] synonym: "neck musculature" EXACT [FMA:71290] xref: FMA:71290 xref: MESH:A.02.633.567.650 is_a: UBERON:0001015 ! implied link automatically realized ! musculature relationship: part_of UBERON:0000974 intersection_of: UBERON:0001015 ! musculature intersection_of: part_of UBERON:0000974 ! neck [Term] id: UBERON:0004466 name: musculature of leg alt_id: UBERON:0005632 def: "A musculature that is part of a lower leg or upper leg [Obol]." [OBOL:automatic] comment: see notes on UBERON:0000978 for possible confusion over the term 'leg'. This class represents the class-union of upper leg musculature and lower leg musculature (and thus may not mean precisely the same thing as the EHDAA2 class) synonym: "leg muscle system" EXACT [EHDAA2:0000973] xref: EHDAA2:0000973 is_a: UBERON:0004482 ! implied link automatically realized ! musculature of lower limb relationship: part_of UBERON:0000978 intersection_of: UBERON:0001015 ! musculature intersection_of: part_of UBERON:0000978 ! leg [Term] id: UBERON:0004467 name: musculature of pharynx def: "A musculature that is part of a pharynx [Obol]." [OBOL:automatic] subset: vertebrate_core xref: FMA:264609 xref: ZFA:0001307 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001015 ! implied link automatically realized ! musculature relationship: part_of UBERON:0001042 intersection_of: UBERON:0001015 ! musculature intersection_of: part_of UBERON:0001042 ! chordate pharynx [Term] id: UBERON:0004468 name: set of muscles of vertebral column def: "A musculature that is part of a vertebral column [Obol]." [OBOL:automatic] synonym: "muscle group of vertebral column" EXACT [FMA:33061] xref: FMA:33061 is_a: UBERON:0004469 ! implied link automatically realized ! musculature of back relationship: part_of UBERON:0001130 intersection_of: UBERON:0001015 ! musculature intersection_of: part_of UBERON:0001130 ! vertebral column [Term] id: UBERON:0004469 name: musculature of back def: "A musculature that is part of a back [Obol]." [OBOL:automatic] synonym: "muscle group of back" EXACT [FMA:71291] synonym: "muscles of back" EXACT [FMA:71291] synonym: "musculi dorsi" EXACT [FMA:71291, FMA:TA] xref: FMA:71291 is_a: UBERON:0004479 ! implied link automatically realized ! musculature of trunk relationship: part_of UBERON:0001137 intersection_of: UBERON:0001015 ! musculature intersection_of: part_of UBERON:0001137 ! back [Term] id: UBERON:0004470 name: musculature of pelvic girdle alt_id: UBERON:0005633 def: "A musculature that is part of a pelvic girdle [Obol]." [OBOL:automatic] synonym: "muscle group of pelvic girdle" EXACT [FMA:50205] synonym: "pelvic girdle muscle system" EXACT [EHDAA2:0001429] synonym: "pelvic girdle muscles" EXACT [AAO:0000427] synonym: "pelvic girdle musculature" EXACT [FMA:50205] xref: AAO:0000427 xref: EHDAA2:0001429 xref: FMA:50205 is_a: UBERON:0007270 ! implied link automatically realized ! hind limb/fin musculature relationship: part_of UBERON:0001271 intersection_of: UBERON:0001015 ! musculature intersection_of: part_of UBERON:0001271 ! pelvic girdle [Term] id: UBERON:0004471 name: musculature of pectoral girdle def: "A musculature that is part of a pectoral girdle [Obol]." [OBOL:automatic] synonym: "muscle group of pectoral girdle" EXACT [FMA:33519] synonym: "pectoral girdle muscles" EXACT [AAO:0000423] synonym: "pectoral girdle musculature" EXACT [FMA:33519] xref: AAO:0000423 xref: FMA:33519 is_a: UBERON:0007269 ! implied link automatically realized ! fore limb/fin musculature relationship: part_of UBERON:0001421 intersection_of: UBERON:0001015 ! musculature intersection_of: part_of UBERON:0001421 ! pectoral girdle [Term] id: UBERON:0004472 name: musculature of chest def: "A musculature that is part of a chest [Obol]." [OBOL:automatic] synonym: "chest musculature" EXACT [FMA:74779] xref: FMA:74779 is_a: UBERON:0004464 ! implied link automatically realized ! musculature of thorax relationship: part_of UBERON:0001443 intersection_of: UBERON:0001015 ! musculature intersection_of: part_of UBERON:0001443 ! chest [Term] id: UBERON:0004473 name: musculature of face comment: originally created to reflect the distinction drawn in FMA between a facial muscle and the entire musculature of the face. However, naming both does not serve any particular purpose synonym: "entire facial musculature" EXACT [UBERON:cjm] synonym: "facial muscles" EXACT [FMA:71288] synonym: "muscle group of face" EXACT [FMA:71288] synonym: "musculi faciei" EXACT [FMA:71288, FMA:TA] xref: FMA:71288 is_a: UBERON:0004461 ! implied link automatically realized ! musculature of head relationship: part_of UBERON:0001456 intersection_of: UBERON:0001015 ! musculature intersection_of: part_of UBERON:0001456 ! face [Term] id: UBERON:0004474 name: musculature of arm def: "A musculature that is part of an arm [Obol]." [OBOL:automatic] synonym: "arm musculature" EXACT [FMA:50202] synonym: "muscle group of arm" EXACT [FMA:50202] xref: FMA:50202 is_a: UBERON:0004481 ! implied link automatically realized ! musculature of upper limb relationship: part_of UBERON:0001460 intersection_of: UBERON:0001015 ! musculature intersection_of: part_of UBERON:0001460 ! arm [Term] id: UBERON:0004475 name: musculature of hip def: "A musculature that is part of a hip [Obol]." [OBOL:automatic] synonym: "hip musculature" EXACT [FMA:50227] synonym: "muscle group of hip" EXACT [FMA:50227] xref: FMA:50227 is_a: UBERON:0004470 ! implied link automatically realized ! musculature of pelvic girdle is_a: UBERON:0004480 ! implied link automatically realized ! musculature of limb relationship: part_of UBERON:0001464 intersection_of: UBERON:0001015 ! musculature intersection_of: part_of UBERON:0001464 ! hip [Term] id: UBERON:0004476 name: musculature of shoulder def: "A musculature that is part of a shoulder [Obol]." [OBOL:automatic] synonym: "muscle group of shoulder" EXACT [FMA:50220] xref: FMA:50220 is_a: UBERON:0004471 ! implied link automatically realized ! musculature of pectoral girdle is_a: UBERON:0004481 ! implied link automatically realized ! musculature of upper limb relationship: part_of UBERON:0001467 intersection_of: UBERON:0001015 ! musculature intersection_of: part_of UBERON:0001467 ! shoulder [Term] id: UBERON:0004477 name: Set of muscles of tongue def: "A musculature that is part of a tongue [Obol]." [OBOL:automatic] synonym: "muscle group of tongue" EXACT [FMA:71289] synonym: "muscles of tongue" EXACT [FMA:71289] synonym: "musculi linguae" EXACT [FMA:71289, FMA:TA] xref: FMA:71289 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0004461 ! implied link automatically realized ! musculature of head relationship: part_of UBERON:0001723 intersection_of: UBERON:0001015 ! musculature intersection_of: part_of UBERON:0001723 ! tongue [Term] id: UBERON:0004478 name: musculature of larynx def: "A musculature that is part of a larynx [Obol]." [OBOL:automatic] synonym: "laryngeal muscles" EXACT [FMA:46616] synonym: "laryngeal muscles set" EXACT [FMA:46616] synonym: "muscle group of larynx" EXACT [FMA:46616] xref: FMA:264611 xref: FMA:46616 xref: MESH:A.02.633.567.500 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001015 ! implied link automatically realized ! musculature relationship: part_of UBERON:0001737 intersection_of: UBERON:0001015 ! musculature intersection_of: part_of UBERON:0001737 ! larynx [Term] id: UBERON:0004479 name: musculature of trunk def: "A musculature that is part of a trunk [Obol]." [OBOL:automatic] synonym: "muscle group of trunk" EXACT [FMA:50187] xref: EFO:0003531 xref: FMA:50187 is_a: UBERON:0001015 ! implied link automatically realized ! musculature relationship: part_of UBERON:0002100 intersection_of: UBERON:0001015 ! musculature intersection_of: part_of UBERON:0002100 ! trunk [Term] id: UBERON:0004480 name: musculature of limb alt_id: UBERON:0005635 def: "A musculature that is part of a limb [Obol]." [OBOL:automatic] synonym: "limb muscle system" EXACT [EHDAA2:0000995] synonym: "limb musculature" EXACT [FMA:50188] synonym: "muscle group of limb" EXACT [FMA:50188] xref: EHDAA2:0000995 xref: FMA:50188 is_a: UBERON:0007271 ! implied link automatically realized ! limb/fin musculature relationship: part_of UBERON:0002101 intersection_of: UBERON:0001015 ! musculature intersection_of: part_of UBERON:0002101 ! limb [Term] id: UBERON:0004481 name: musculature of upper limb def: "A musculature that is part of a forelimb [Obol]." [OBOL:automatic] synonym: "muscles of upper limb" EXACT [FMA:71296] synonym: "musculi membri superioris" EXACT [FMA:71296, FMA:TA] synonym: "upper limb musculature" EXACT [FMA:71296] xref: FMA:71296 is_a: UBERON:0004480 ! implied link automatically realized ! musculature of limb is_a: UBERON:0007269 ! implied link automatically realized ! fore limb/fin musculature relationship: part_of UBERON:0002102 intersection_of: UBERON:0001015 ! musculature intersection_of: part_of UBERON:0002102 ! forelimb [Term] id: UBERON:0004482 name: musculature of lower limb def: "A musculature that is part of a hindlimb [Obol]." [OBOL:automatic] synonym: "muscles of lower limb" EXACT [FMA:71297] synonym: "musculi membri inferioris" EXACT [FMA:71297, FMA:TA] xref: FMA:71297 is_a: UBERON:0004480 ! implied link automatically realized ! musculature of limb is_a: UBERON:0007270 ! implied link automatically realized ! hind limb/fin musculature relationship: part_of UBERON:0002103 intersection_of: UBERON:0001015 ! musculature intersection_of: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0004483 name: Set of iliocostalis muscles def: "A musculature that is part of a iliocostalis [Obol]." [OBOL:automatic] synonym: "iliocostalis muscle group" EXACT [FMA:33062] synonym: "iliocostalis muscles set" EXACT [FMA:33062] xref: FMA:33062 is_a: UBERON:0001015 ! implied link automatically realized ! musculature relationship: part_of UBERON:0002251 intersection_of: UBERON:0001015 ! musculature intersection_of: part_of UBERON:0002251 ! iliocostalis [Term] id: UBERON:0004484 name: Set of splenius muscles def: "A musculature that is part of a splenius [Obol]." [OBOL:automatic] synonym: "splenius muscle group" EXACT [FMA:22596] synonym: "splenius muscles set" EXACT [FMA:22596] xref: FMA:22596 is_a: UBERON:0001015 ! implied link automatically realized ! musculature relationship: part_of UBERON:0002252 intersection_of: UBERON:0001015 ! musculature intersection_of: part_of UBERON:0002252 ! splenius [Term] id: UBERON:0004485 name: Set of muscles of pelvis def: "A musculature that is part of a pelvis [Obol]." [OBOL:automatic] synonym: "muscle group of pelvis" EXACT [FMA:50248] xref: FMA:50248 is_a: UBERON:0004479 ! implied link automatically realized ! musculature of trunk relationship: part_of UBERON:0002355 intersection_of: UBERON:0001015 ! musculature intersection_of: part_of UBERON:0002355 ! pelvis [Term] id: UBERON:0004486 name: musculature of perineum def: "A musculature that is part of a perineum [Obol]." [OBOL:automatic] synonym: "musculi perinei" EXACT [FMA:71295, FMA:TA] synonym: "perineal muscles" EXACT [FMA:71295] synonym: "perineal muscles set" EXACT [FMA:71295] xref: EMAPA:18923 xref: FMA:71295 is_a: UBERON:0004479 ! implied link automatically realized ! musculature of trunk relationship: part_of UBERON:0002356 intersection_of: UBERON:0001015 ! musculature intersection_of: part_of UBERON:0002356 ! perineum [Term] id: UBERON:0004487 name: musculature of forearm def: "A musculature that is part of a lower arm [Obol]." [OBOL:automatic] synonym: "muscle group of forearm" EXACT [FMA:39089] xref: FMA:39089 is_a: UBERON:0004474 ! implied link automatically realized ! musculature of arm relationship: part_of UBERON:0002386 intersection_of: UBERON:0001015 ! musculature intersection_of: part_of UBERON:0002386 ! forelimb zeugopod [Term] id: UBERON:0004488 name: musculature of foot def: "A musculature that is part of a foot [Obol]." [OBOL:automatic] synonym: "foot musculature" EXACT [FMA:50214] synonym: "muscle group of foot" EXACT [FMA:50214] xref: FMA:50214 is_a: UBERON:0004482 ! implied link automatically realized ! musculature of lower limb relationship: part_of UBERON:0002387 intersection_of: UBERON:0001015 ! musculature intersection_of: part_of UBERON:0002387 ! foot [Term] id: UBERON:0004489 name: musculature of hand def: "A musculature that is part of a hand [Obol]." [OBOL:automatic] synonym: "hand musculature" EXACT [FMA:42368] synonym: "muscle group of hand" EXACT [FMA:42368] xref: FMA:42368 is_a: UBERON:0004481 ! implied link automatically realized ! musculature of upper limb relationship: part_of UBERON:0002398 intersection_of: UBERON:0001015 ! musculature intersection_of: part_of UBERON:0002398 ! hand [Term] id: UBERON:0004490 name: cardiac muscle tissue of atrium def: "A portion of cardiac muscle tissue that is part of an atrium [Obol]." [OBOL:automatic] xref: FMA:7283 is_a: UBERON:0001133 ! implied link automatically realized ! cardiac muscle tissue relationship: part_of UBERON:0002081 intersection_of: UBERON:0001133 ! cardiac muscle tissue intersection_of: part_of UBERON:0002081 ! cardiac atrium [Term] id: UBERON:0004491 name: cardiac muscle tissue of interatrial septum def: "A portion of cardiac muscle tissue that is part of a interatrial septum [Obol]." [OBOL:automatic] xref: FMA:84083 is_a: UBERON:0004492 ! implied link automatically realized ! cardiac muscle tissue of cardiac septum relationship: part_of UBERON:0002085 intersection_of: UBERON:0001133 ! cardiac muscle tissue intersection_of: part_of UBERON:0002085 ! interatrial septum [Term] id: UBERON:0004492 name: cardiac muscle tissue of cardiac septum def: "A portion of cardiac muscle tissue that is part of a cardiac septum [Obol]." [OBOL:automatic] xref: FMA:226279 is_a: UBERON:0001133 ! implied link automatically realized ! cardiac muscle tissue relationship: part_of UBERON:0002099 intersection_of: UBERON:0001133 ! cardiac muscle tissue intersection_of: part_of UBERON:0002099 ! cardiac septum [Term] id: UBERON:0004493 name: cardiac muscle tissue of myocardium def: "A portion of cardiac muscle tissue that is part of a myocardium [Obol]." [OBOL:automatic] xref: FMA:261726 is_a: UBERON:0001133 ! implied link automatically realized ! cardiac muscle tissue relationship: part_of UBERON:0002349 intersection_of: UBERON:0001133 ! cardiac muscle tissue intersection_of: part_of UBERON:0002349 ! myocardium [Term] id: UBERON:0004494 name: cardiac muscle tissue of papillary muscle def: "A portion of cardiac muscle tissue that is part of a papillary muscle [Obol]." [OBOL:automatic] xref: FMA:84425 is_a: UBERON:0001133 ! implied link automatically realized ! cardiac muscle tissue relationship: part_of UBERON:0002494 intersection_of: UBERON:0001133 ! cardiac muscle tissue intersection_of: part_of UBERON:0002494 ! papillary muscle [Term] id: UBERON:0004495 name: skeletal muscle tissue of diaphragm def: "A portion of skeletal muscle tissue that is part of a diaphragm [Obol]." [OBOL:automatic] xref: FMA:261898 is_a: UBERON:0003898 ! implied link automatically realized ! skeletal muscle of trunk is_a: UBERON:0004830 ! implied link automatically realized ! respiratory system skeletal muscle relationship: part_of UBERON:0001103 intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: part_of UBERON:0001103 ! diaphragm [Term] id: UBERON:0004496 name: skeletal muscle tissue of iliacus def: "A portion of skeletal muscle tissue that is part of a iliacus [Obol]." [OBOL:automatic] xref: FMA:261992 is_a: UBERON:0003271 ! implied link automatically realized ! skeletal muscle of pelvic girdle relationship: part_of UBERON:0001369 intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: part_of UBERON:0001369 ! iliacus [Term] id: UBERON:0004497 name: skeletal muscle tissue of gluteus maximus def: "A portion of skeletal muscle tissue that is part of a gluteus maximus [Obol]." [OBOL:automatic] xref: FMA:261980 is_a: UBERON:0003271 ! implied link automatically realized ! skeletal muscle of pelvic girdle relationship: part_of UBERON:0001370 intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: part_of UBERON:0001370 ! gluteus maximus [Term] id: UBERON:0004498 name: skeletal muscle tissue of quadriceps femoris def: "A portion of skeletal muscle tissue that is part of a quadriceps femoris [Obol]." [OBOL:automatic] xref: FMA:261998 is_a: UBERON:0001134 ! implied link automatically realized ! skeletal muscle tissue relationship: part_of UBERON:0001377 intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: part_of UBERON:0001377 ! quadriceps femoris [Term] id: UBERON:0004499 name: skeletal muscle tissue of tibialis anterior def: "A portion of skeletal muscle tissue that is part of a tibialis anterior [Obol]." [OBOL:automatic] xref: FMA:262004 is_a: UBERON:0001134 ! implied link automatically realized ! skeletal muscle tissue relationship: part_of UBERON:0001385 intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: part_of UBERON:0001385 ! tibialis anterior [Term] id: UBERON:0004500 name: skeletal muscle tissue of deltoid def: "A portion of skeletal muscle tissue that is part of a deltoid [Obol]." [OBOL:automatic] xref: FMA:261732 is_a: UBERON:0001134 ! implied link automatically realized ! skeletal muscle tissue relationship: part_of UBERON:0001476 intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: part_of UBERON:0001476 ! deltoid [Term] id: UBERON:0004501 name: skeletal muscle tissue of teres major def: "A portion of skeletal muscle tissue that is part of a teres major [Obol]." [OBOL:automatic] xref: FMA:261962 is_a: UBERON:0001134 ! implied link automatically realized ! skeletal muscle tissue relationship: part_of UBERON:0001478 intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: part_of UBERON:0001478 ! teres major [Term] id: UBERON:0004502 name: skeletal muscle tissue of biceps brachii def: "A portion of skeletal muscle tissue that is part of a biceps brachii [Obol]." [OBOL:automatic] xref: FMA:261974 is_a: UBERON:0003272 ! implied link automatically realized ! skeletal muscle of arm relationship: part_of UBERON:0001507 intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: part_of UBERON:0001507 ! biceps brachii [Term] id: UBERON:0004503 name: skeletal muscle tissue of digastric def: "A portion of skeletal muscle tissue that is part of a digastric [Obol]." [OBOL:automatic] xref: FMA:261872 is_a: UBERON:0001134 ! implied link automatically realized ! skeletal muscle tissue relationship: part_of UBERON:0001562 intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: part_of UBERON:0001562 ! digastric [Term] id: UBERON:0004504 name: skeletal muscle tissue of mylohyoid def: "A portion of skeletal muscle tissue that is part of a mylohyoid [Obol]." [OBOL:automatic] xref: FMA:261878 is_a: UBERON:0001134 ! implied link automatically realized ! skeletal muscle tissue relationship: part_of UBERON:0001564 intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: part_of UBERON:0001564 ! mylohyoid [Term] id: UBERON:0004505 name: skeletal muscle tissue of orbicularis oculi def: "A portion of skeletal muscle tissue that is part of a orbicularis oculi [Obol]." [OBOL:automatic] xref: FMA:261812 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0003269 ! implied link automatically realized ! skeletal muscle of eye relationship: part_of UBERON:0001578 intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: part_of UBERON:0001578 ! orbicularis oculi [Term] id: UBERON:0004506 name: skeletal muscle tissue of masseter def: "A portion of skeletal muscle tissue that is part of a masseter [Obol]." [OBOL:automatic] xref: FMA:261824 is_a: UBERON:0003899 ! implied link automatically realized ! skeletal muscle of head relationship: part_of UBERON:0001597 intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: part_of UBERON:0001597 ! masseter [Term] id: UBERON:0004507 name: skeletal muscle tissue of temporalis def: "A portion of skeletal muscle tissue that is part of a temporalis [Obol]." [OBOL:automatic] xref: FMA:261740 is_a: UBERON:0003899 ! implied link automatically realized ! skeletal muscle of head relationship: part_of UBERON:0001598 intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: part_of UBERON:0001598 ! temporalis [Term] id: UBERON:0004508 name: skeletal muscle tissue of levator palpebrae superioris def: "A portion of skeletal muscle tissue that is part of a levator palpebrae superioris [Obol]." [OBOL:automatic] xref: FMA:261782 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0003269 ! implied link automatically realized ! skeletal muscle of eye relationship: part_of UBERON:0001604 intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: part_of UBERON:0001604 ! levator palpebrae superioris [Term] id: UBERON:0004509 name: skeletal muscle tissue of trapezius def: "A portion of skeletal muscle tissue that is part of a trapezius [Obol]." [OBOL:automatic] xref: FMA:261938 is_a: UBERON:0001134 ! implied link automatically realized ! skeletal muscle tissue relationship: part_of UBERON:0002380 intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: part_of UBERON:0002380 ! trapezius [Term] id: UBERON:0004510 name: skeletal muscle tissue of pectoralis major def: "A portion of skeletal muscle tissue that is part of a pectoralis major [Obol]." [OBOL:automatic] xref: FMA:261968 is_a: UBERON:0003898 ! implied link automatically realized ! skeletal muscle of trunk relationship: part_of UBERON:0002381 intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: part_of UBERON:0002381 ! pectoralis major [Term] id: UBERON:0004511 name: skeletal muscle tissue of rectus abdominis def: "A portion of skeletal muscle tissue that is part of a rectus abdominis [Obol]." [OBOL:automatic] xref: FMA:261924 is_a: UBERON:0003898 ! implied link automatically realized ! skeletal muscle of trunk relationship: part_of UBERON:0002382 intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: part_of UBERON:0002382 ! rectus abdominis [Term] id: UBERON:0004512 name: skeletal muscle tissue of supraspinatus def: "A portion of skeletal muscle tissue that is part of a supraspinatus [Obol]." [OBOL:automatic] xref: FMA:261956 is_a: UBERON:0001134 ! implied link automatically realized ! skeletal muscle tissue relationship: part_of UBERON:0002383 intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: part_of UBERON:0002383 ! supraspinatus [Term] id: UBERON:0004513 name: skeletal muscle tissue of internal intercostal muscle def: "A portion of skeletal muscle tissue that is part of a internal intercostal muscle [Obol]." [OBOL:automatic] xref: FMA:261888 is_a: UBERON:0003898 ! implied link automatically realized ! skeletal muscle of trunk relationship: part_of UBERON:0002403 intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: part_of UBERON:0002403 ! internal intercostal muscle [Term] id: UBERON:0004514 name: skeletal muscle tissue of transversus thoracis def: "A portion of skeletal muscle tissue that is part of a transversus thoracis [Obol]." [OBOL:automatic] xref: FMA:261892 is_a: UBERON:0003898 ! implied link automatically realized ! skeletal muscle of trunk relationship: part_of UBERON:0002404 intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: part_of UBERON:0002404 ! transversus thoracis [Term] id: UBERON:0004515 name: smooth muscle tissue of bronchiole def: "A portion of smooth muscle tissue that is part of a bronchiole [Obol]." [OBOL:automatic] synonym: "smooth muscle tissue of lobular bronchiole" EXACT [FMA:261081] xref: FMA:261045 xref: FMA:261081 is_a: UBERON:0004233 ! implied link automatically realized ! lower respiratory tract smooth muscle relationship: part_of UBERON:0002186 intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0002186 ! bronchiole [Term] id: UBERON:0004516 name: smooth muscle tissue of terminal bronchiole def: "A portion of smooth muscle tissue that is part of a terminal bronchiole [Obol]." [OBOL:automatic] xref: FMA:261051 is_a: UBERON:0004515 ! implied link automatically realized ! smooth muscle tissue of bronchiole relationship: part_of UBERON:0002187 intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0002187 ! terminal bronchiole [Term] id: UBERON:0004517 name: smooth muscle tissue of respiratory bronchiole def: "A portion of smooth muscle tissue that is part of a respiratory bronchiole [Obol]." [OBOL:automatic] xref: FMA:261055 is_a: UBERON:0004515 ! implied link automatically realized ! smooth muscle tissue of bronchiole relationship: part_of UBERON:0002188 intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0002188 ! respiratory bronchiole [Term] id: UBERON:0004518 name: muscle of vertebral column def: "A muscle organ that is part of a vertebral column [Obol]." [OBOL:automatic] synonym: "vertebral column muscle" EXACT [FMA:22594] xref: FMA:22594 is_a: UBERON:0002324 ! implied link automatically realized ! muscle of back relationship: part_of UBERON:0001130 intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0001130 ! vertebral column [Term] id: UBERON:0004519 name: muscle of anal triangle def: "A muscle organ that is part of an anal region [Obol]." [OBOL:automatic] synonym: "anal triangle muscle" EXACT [FMA:77304] xref: FMA:77304 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002379 ! perineal muscle relationship: part_of UBERON:0001353 intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0001353 ! anal region [Term] id: UBERON:0004520 name: striated muscle tissue of prostate def: "A portion of striated muscle tissue that is part of a prostate gland [Obol]." [OBOL:automatic] xref: FMA:45716 is_a: UBERON:0001134 ! skeletal muscle tissue is_a: UBERON:0008715 ! implied link automatically realized ! muscle tissue of prostate relationship: part_of UBERON:0002367 intersection_of: UBERON:0002036 ! striated muscle tissue intersection_of: part_of UBERON:0002367 ! prostate gland [Term] id: UBERON:0004521 name: vasculature of muscle organ def: "A vasculature that is part of a muscle organ [Obol]." [OBOL:automatic] synonym: "muscular organ vasculature" EXACT [FMA:87123] xref: FMA:87123 is_a: UBERON:0004522 ! implied link automatically realized ! vasculature of musculoskeletal system is_a: UBERON:0006876 ! implied link automatically realized ! vasculature of organ relationship: part_of UBERON:0001630 intersection_of: UBERON:0002049 ! vasculature intersection_of: part_of UBERON:0001630 ! muscle organ [Term] id: UBERON:0004522 name: vasculature of musculoskeletal system def: "A vasculature that is part of a musculoskeletal system [Obol]." [OBOL:automatic] xref: FMA:239607 is_a: UBERON:0002049 ! implied link automatically realized ! vasculature is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0002204 intersection_of: UBERON:0002049 ! vasculature intersection_of: part_of UBERON:0002204 ! musculoskeletal system [Term] id: UBERON:0004523 name: papillary muscle of right ventricle def: "A papillary muscle that is part of a right ventricle [Obol]." [OBOL:automatic] xref: EHDAA2:0004544 xref: FMA:7259 is_a: UBERON:0002494 ! implied link automatically realized ! papillary muscle relationship: part_of UBERON:0002080 intersection_of: UBERON:0002494 ! papillary muscle intersection_of: part_of UBERON:0002080 ! heart right ventricle [Term] id: UBERON:0004524 name: papillary muscle of left ventricle def: "A papillary muscle that is part of a left ventricle [Obol]." [OBOL:automatic] xref: FMA:9352 is_a: UBERON:0002494 ! implied link automatically realized ! papillary muscle relationship: part_of UBERON:0002084 intersection_of: UBERON:0002494 ! papillary muscle intersection_of: part_of UBERON:0002084 ! heart left ventricle [Term] id: UBERON:0004525 name: cardiac muscle tissue of trabecula carnea of right ventricle def: "A portion of trabecula carnea cardiac muscle tissue that is part of a right ventricle [Obol]." [OBOL:automatic] xref: FMA:84429 is_a: UBERON:0003381 ! implied link automatically realized ! cardiac muscle of right ventricle is_a: UBERON:0003452 ! implied link automatically realized ! trabecula carnea cardiac muscle tissue relationship: part_of UBERON:0002080 intersection_of: UBERON:0003452 ! trabecula carnea cardiac muscle tissue intersection_of: part_of UBERON:0002080 ! heart right ventricle [Term] id: UBERON:0004526 name: cardiac muscle tissue of trabecula carnea of left ventricle def: "A portion of trabecula carnea cardiac muscle tissue that is part of a left ventricle [Obol]." [OBOL:automatic] xref: FMA:84430 is_a: UBERON:0003382 ! implied link automatically realized ! cardiac muscle of left ventricle is_a: UBERON:0003452 ! implied link automatically realized ! trabecula carnea cardiac muscle tissue relationship: part_of UBERON:0002084 intersection_of: UBERON:0003452 ! trabecula carnea cardiac muscle tissue intersection_of: part_of UBERON:0002084 ! heart left ventricle [Term] id: UBERON:0004527 name: alveolar process of maxilla alt_id: UBERON:0001696 def: "thickened ridge of bone that contains the tooth sockets on bones that bear teeth. In humans, the tooth-bearing bones are the maxilla and the mandible. The mineral content of alveolar bone is mostly hydroxyapatite, which is also found in enamel as the main inorganic substance[WP]." [Wikipedia:Alveolar_process_of_maxilla] synonym: "alveolar margin of maxilla" EXACT [] synonym: "alveolar part of maxilla" EXACT [] synonym: "alveolar ridge of maxilla" EXACT [] synonym: "lower alveolar ridge" EXACT [] synonym: "maxilla alveolar process" EXACT [] synonym: "posterior alveolar ridge" EXACT [] synonym: "processus alveolaris (maxilla)" EXACT [] xref: FMA:52897 xref: MA:0001492 xref: SCTID:245795005 is_a: UBERON:0004103 ! implied link automatically realized ! alveolar ridge relationship: part_of UBERON:0002397 intersection_of: UBERON:0004103 ! alveolar ridge intersection_of: part_of UBERON:0002397 ! maxilla [Term] id: UBERON:0004528 name: alveolar ridge of mandible def: "The alveolar part of mandible is the part of the mandible, adjacent to the teeth, containing the dental alveolus. [WP,unvetted]." [Wikipedia:Alveolar_part_of_mandible] synonym: "alveolar margin of mandible" EXACT [] synonym: "alveolar part of mandible" EXACT [] synonym: "alveolar process of mandible" EXACT [FMA:52832] synonym: "anterior alveolar ridge" EXACT [] synonym: "pars alveolaris (mandibula)" EXACT [FMA:52832] synonym: "upper alveolar ridge" EXACT [] xref: FMA:52832 xref: SCTID:245791001 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0004103 ! implied link automatically realized ! alveolar ridge relationship: part_of UBERON:0001684 intersection_of: UBERON:0004103 ! alveolar ridge intersection_of: part_of UBERON:0001684 ! mandible [Term] id: UBERON:0004529 name: anatomical projection def: "a projection or outgrowth of tissue from a larger body or organ." [Wikipedia:Process_(anatomy)] synonym: "anatomical process" BROAD [] synonym: "organ process" NARROW [] synonym: "process" BROAD [] synonym: "process of organ" NARROW [] synonym: "projection" EXACT [] xref: AAO:0010278 xref: FMA:67601 xref: HAO:0000822 xref: XAO:0004020 is_a: UBERON:0000063 ! organ segment [Term] id: UBERON:0004530 name: bony projection def: "Portion of connective tissue that is an extension of a bone." [] subset: vertebrate_core synonym: "bone process" BROAD [] synonym: "projection of bone" EXACT [] xref: FMA:75433 xref: ZFA:0001637 is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004529 ! implied link automatically realized ! anatomical projection relationship: part_of UBERON:0001474 intersection_of: UBERON:0004529 ! anatomical projection intersection_of: part_of UBERON:0001474 ! bone relationship: has_part UBERON:0002481 ! bone tissue [Term] id: UBERON:0004531 name: left side of organism is_a: UBERON:0000061 ! anatomical structure relationship: in_left_side_of UBERON:0000468 ! multi-cellular organism [Term] id: UBERON:0004532 name: right side of organism is_a: UBERON:0000061 ! anatomical structure relationship: in_right_side_of UBERON:0000468 ! multi-cellular organism [Term] id: UBERON:0004533 name: left testicle def: "A testis that is part of a left side of organism [Obol]." [OBOL:automatic] synonym: "left testis" EXACT [MA:0001746] xref: FMA:7212 xref: MA:0001746 xref: ncithesaurus:Left_Testis xref: SCTID:367720001 is_a: UBERON:0000473 ! implied link automatically realized ! testis relationship: part_of UBERON:0004531 intersection_of: UBERON:0000473 ! testis intersection_of: part_of UBERON:0004531 ! left side of organism [Term] id: UBERON:0004534 name: right testicle def: "A testis that is part of a right side of organism [Obol]." [OBOL:automatic] synonym: "right testis" EXACT [MA:0001747] xref: FMA:7211 xref: MA:0001747 xref: ncithesaurus:Right_Testis xref: OpenCyc:Mx4rvVjM25wpEbGdrcN5Y29ycA xref: SCTID:367719007 is_a: UBERON:0000473 ! implied link automatically realized ! testis relationship: part_of UBERON:0004532 intersection_of: UBERON:0000473 ! testis intersection_of: part_of UBERON:0004532 ! right side of organism [Term] id: UBERON:0004535 name: cardiovascular system def: "Anatomical system that has as its parts the heart and blood vessels." [BTO:0000088] subset: uberon_slim subset: vertebrate_core synonym: "CV system" RELATED [BTO:0000088] synonym: "Herz und Gefaesssystem" RELATED [BTO:0000088] xref: AAO:0011001 xref: BILA:0000016 xref: BTO:0000088 xref: EFO:0000791 xref: EHDAA:394 xref: EHDAA2:0000216 xref: EMAPA:16104 xref: EMAPA:16370 xref: EV:0100017 xref: FMA:7161 xref: GAID:467 xref: MA:0000010 xref: MAT:0000016 xref: MESH:A.07 xref: MIAA:0000016 xref: ncithesaurus:Cardiovascular_System xref: OG:0000302 xref: OpenCyc:Mx4rvVjzG5wpEbGdrcN5Y29ycA xref: SCTID:278198007 xref: TAO:0000010 xref: XAO:0000100 xref: XAO:0001010 xref: ZFA:0000010 is_a: UBERON:0000467 ! implied link automatically realized ! anatomical system relationship: has_part UBERON:0000948 relationship: has_part UBERON:0001981 relationship: part_of UBERON:0001009 intersection_of: UBERON:0000467 ! anatomical system intersection_of: has_part UBERON:0000948 ! heart intersection_of: has_part UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0001009 ! circulatory system [Term] id: UBERON:0004536 name: lymph vasculature def: "A network of blunt ended vessels lacking direct connection to the blood vascular system. These vessels collect and drain fluids and macromolecules from interstitial spaces throughout the animal. They derive from a subpopulation of endothelial cells and have walls that are much thinner than the blood carrying vessels. Lymphatic vessels are usually classified as either superficial or deep." [ZFA:0005105] subset: vertebrate_core synonym: "lymphatic trunks and ducts" EXACT [FMA:63815] synonym: "lymphatic vasculature" EXACT [] synonym: "lymphatic vessel network" EXACT [] synonym: "lymphatic vessels set" EXACT [FMA:63815] synonym: "set of lymphatic vessels" EXACT [] synonym: "trunci et ductus lymphatici" EXACT [FMA:63815, FMA:TA] xref: FMA:63815 xref: ZFA:0005105 is_a: UBERON:0002049 ! implied link automatically realized ! vasculature relationship: has_part UBERON:0002391 intersection_of: UBERON:0002049 ! vasculature intersection_of: has_part UBERON:0002391 ! lymph relationship: part_of UBERON:0002465 ! lymphoid system [Term] id: UBERON:0004537 name: blood vasculature def: "a vascular network consisting of blood vessels" [UBERON:cjm] synonym: "blood vascular network" EXACT [] synonym: "set of blood vessels" EXACT [] xref: ZFA:0001079 is_a: UBERON:0002049 ! implied link automatically realized ! vasculature relationship: composed_primarily_of UBERON:0000178 intersection_of: UBERON:0002049 ! vasculature intersection_of: composed_primarily_of UBERON:0000178 ! blood relationship: part_of UBERON:0004535 ! cardiovascular system [Term] id: UBERON:0004538 name: left kidney def: "A kidney that is part of a left side of organism [Obol]." [OBOL:automatic] xref: FMA:7205 xref: MA:0001655 xref: ncithesaurus:Left_Kidney xref: SCTID:362209008 is_a: UBERON:0002113 ! implied link automatically realized ! kidney relationship: part_of UBERON:0004531 intersection_of: UBERON:0002113 ! kidney intersection_of: part_of UBERON:0004531 ! left side of organism [Term] id: UBERON:0004539 name: right kidney def: "A kidney that is part of a right side of organism [Obol]." [OBOL:automatic] xref: FMA:7204 xref: MA:0001683 xref: ncithesaurus:Right_Kidney xref: SCTID:362208000 is_a: UBERON:0002113 ! implied link automatically realized ! kidney relationship: part_of UBERON:0004532 intersection_of: UBERON:0002113 ! kidney intersection_of: part_of UBERON:0004532 ! right side of organism [Term] id: UBERON:0004540 name: proper plantar digital artery def: "." [Wikipedia:Proper_plantar_digital_arteries] comment: the MA term, even though plural, represents the singular, as it is an isa child of artery. We use the FMA set term as it is the closest match, but the semantics of set terms are unclear synonym: "arteriae digitales plantares propriae" EXACT [FMA:71564, FMA:TA] synonym: "plantar digital artery proper" EXACT [] synonym: "proper plantar digital arteries" EXACT [MA:0001968] xref: FMA:71564 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a9/Gray1237.svg/200px-Gray1237.svg.png xref: MA:0001968 is_a: UBERON:0006138 ! plantar digital artery [Term] id: UBERON:0004544 name: epididymis epithelium def: "A simple columnar epithelium that is part of a epididymis [Obol]." [OBOL:automatic] synonym: "Epididymis epithelium" EXACT [FMA:19153] synonym: "epithelium of epididymis" EXACT [FMA:19153] xref: EMAPA:30445 xref: FMA:19153 xref: MA:0002825 is_a: UBERON:0000485 ! implied link automatically realized ! simple columnar epithelium is_a: UBERON:0004910 ! implied link automatically realized ! epithelium of male gonad relationship: part_of UBERON:0001301 intersection_of: UBERON:0000485 ! simple columnar epithelium intersection_of: part_of UBERON:0001301 ! epididymis [Term] id: UBERON:0004545 name: external capsule def: "External capsule is an organ subdivision of the telencephalon which is made up primarily of myelinated axonal neural tissue (white matter). The external capsule is a sheet-like fiber bundle located lateral to the to the putamen and globus pallidus which projects dorsally to the white matter underlying the cerebral cortex[FMA]." [FMA:61959, Wikipedia:External_capsule] xref: FMA:61959 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/91/Telencephalon-Horiconatal.jpg/200px-Telencephalon-Horiconatal.jpg xref: MA:0002896 xref: ncithesaurus:External_Capsule xref: NIF_GrossAnatomy:nlx_anat_1010013 xref: SCTID:279300007 is_a: UBERON:0002437 ! cerebral white matter [Term] id: UBERON:0004546 name: cribriform plate def: "The cribriform plate of the ethmoid bone (horizontal lamina) is received into the ethmoidal notch of the frontal bone and roofs in the nasal cavities. Projecting upward from the middle line of this plate is a thick, smooth, triangular process, the crista galli, so called from its resemblance to a cock's comb. The long thin posterior border of the crista galli serves for the attachment of the falx cerebri. Its anterior border, short and thick, articulates with the frontal bone, and presents two small projecting alæ, which are received into corresponding depressions in the frontal bone and complete the foramen cecum. Its sides are smooth, and sometimes bulging from the presence of a small air sinus in the interior. On either side of the crista galli, the cribriform plate is narrow and deeply grooved; it supports the olfactory bulb and is perforated by foramina for the passage of the olfactory nerves. The foramina in the middle of the groove are small and transmit the nerves to the roof of the nasal cavity; those at the medial and lateral parts of the groove are larger—the former transmit the nerves to the upper part of the nasal septum, the latter those to the superior nasal concha. At the front part of the cribriform plate, on either side of the crista galli, is a small fissure which is occupied by a process of dura mater. Lateral to this fissure is a notch or foramen which transmits the nasociliary nerve; from this notch a groove extends backward to the anterior ethmoidal foramen. [WP,unvetted]." [Wikipedia:Cribriform_plate] synonym: "cribiform plate of ethmoid bone" EXACT [Wikipedia:Cribriform_plate] synonym: "ethmoid bone lamina cribrosa" RELATED [BTO:0004141] synonym: "lamina cribrosa of ethmoid bone" RELATED [BTO:0004141] xref: BTO:0004141 xref: EMAPA:19201 xref: FMA:52890 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/93/Gray149.png/200px-Gray149.png xref: MA:0002898 xref: SCTID:282814006 is_a: UBERON:0000032 ! implied link automatically realized ! cranial structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001679 {source="MA"} ! ethmoid [Term] id: UBERON:0004547 name: decidua capsularis xref: FMA:86478 xref: MA:0002906 xref: ncithesaurus:Decidua_Capsularis xref: SCTID:255498003 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000478 ! extraembryonic structure is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0002450 ! decidua [Term] id: UBERON:0004548 name: left eye def: "An eye that is part of a left side of organism [Obol]." [OBOL:automatic] synonym: "Left orbital part of face" NARROW [FMA:54450] synonym: "Left orbital region" NARROW [FMA:54450] xref: FMA:54450 xref: MA:0002949 xref: SCTID:362503005 is_a: UBERON:0000970 ! implied link automatically realized ! eye relationship: part_of UBERON:0004531 intersection_of: UBERON:0000970 ! eye intersection_of: part_of UBERON:0004531 ! left side of organism [Term] id: UBERON:0004549 name: right eye def: "An eye that is part of a right side of organism [Obol]." [OBOL:automatic] synonym: "Right orbital part of face" NARROW [FMA:54449] synonym: "Right orbital region" NARROW [FMA:54449] xref: FMA:54449 xref: MA:0002950 xref: SCTID:362502000 is_a: UBERON:0000970 ! implied link automatically realized ! eye relationship: part_of UBERON:0004532 intersection_of: UBERON:0000970 ! eye intersection_of: part_of UBERON:0004532 ! right side of organism [Term] id: UBERON:0004550 name: gastroesophageal sphincter def: "A sphincter muscle that is part of a cardia of stomach [Obol]." [OBOL:automatic] comment: todo - split? check FMA:63048 synonym: "cardiac sphincter" RELATED [MA:0002951] synonym: "gastroesophageal sphincter" EXACT [FMA:14915] synonym: "inferior esophageal sphincter" EXACT [FMA:14915] synonym: "lower esophageal sphincter" RELATED [MA:0002951] xref: FMA:14915 xref: galen:LowerEsophagealSphincter xref: MA:0002951 xref: ncithesaurus:Lower_Esophageal_Sphincter xref: SCTID:267809009 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004590 ! implied link automatically realized ! sphincter muscle relationship: part_of UBERON:0001162 intersection_of: UBERON:0004590 ! sphincter muscle intersection_of: part_of UBERON:0001162 {source="MA"} ! cardia of stomach [Term] id: UBERON:0004551 name: set of proper plantar digital arteries comment: this class was made obsolete, as uberon does not include 'Set of X' classes. For now, the FMA class for set of plantar digital arteries proper is under UBERON:0004540, but it is unclear if this is correct synonym: "arteriae digitales plantares propriae" EXACT [FMA:71564, FMA:TA] synonym: "plantar digital arteries proper" EXACT [FMA:71564] synonym: "plantar digital arteries proper set" EXACT [FMA:71564] xref: FMA:71564 is_obsolete: true [Term] id: UBERON:0004552 name: digital artery def: "An artery that is part of a digit [Obol]." [OBOL:automatic] comment: check part_of - do we need term for digit + metacarpal/tarsal bones? xref: MA:0001941 xref: SCTID:181335004 is_a: UBERON:0001637 ! implied link automatically realized ! artery is_a: UBERON:0003514 ! implied link automatically realized ! limb blood vessel relationship: part_of UBERON:0002544 intersection_of: UBERON:0001637 ! artery intersection_of: part_of UBERON:0002544 ! digit [Term] id: UBERON:0004553 name: forelimb digital artery def: "A digital artery that is part of a forelimb [Obol]." [OBOL:automatic] synonym: "forelimb digital arteries" EXACT [MA:0001953] xref: MA:0001953 is_a: UBERON:0003515 ! implied link automatically realized ! forelimb blood vessel is_a: UBERON:0004552 ! implied link automatically realized ! digital artery relationship: part_of UBERON:0002102 intersection_of: UBERON:0004552 ! digital artery intersection_of: part_of UBERON:0002102 ! forelimb [Term] id: UBERON:0004554 name: hindlimb digital artery def: "A digital artery that is part of a hindlimb [Obol]." [OBOL:automatic] synonym: "digital artery of foot" EXACT [FMA:69713] synonym: "hindlimb digital arteries" EXACT [MA:0001964] xref: FMA:69713 xref: MA:0001964 is_a: UBERON:0003516 ! implied link automatically realized ! hindlimb blood vessel is_a: UBERON:0004552 ! implied link automatically realized ! digital artery relationship: part_of UBERON:0002103 intersection_of: UBERON:0004552 ! digital artery intersection_of: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0004561 name: proper palmar digital vein alt_id: UBERON:FMA_22923-MA_0002121 comment: Some sources distinguish between the "proper palmar digital veins", which are more distal, and the "common palmar digital veins", which are more proximal. synonym: "common palmar digital venous tributary" EXACT [FMA:22926] synonym: "distal palmar digital vein" EXACT [Wikipedia:Palmar_digital_veins] synonym: "proper palmal vein" EXACT [MA:0002126] synonym: "proper palmar vein" EXACT [MA:0002126] synonym: "tributary of common palmar digital vein" EXACT [FMA:22926] xref: FMA:22926 xref: MA:0002126 is_a: UBERON:0004563 ! forelimb digital vein relationship: tributary_of UBERON:0001412 {source="FMA/obol"} ! common palmar digital vein [Term] id: UBERON:0004562 name: digital vein comment: check part_of - do we need term for digit + metacarpal/tarsal bones? xref: MA:0002101 xref: ncithesaurus:Digital_Vein is_a: UBERON:0001638 ! vein is_a: UBERON:0003514 ! implied link automatically realized ! limb blood vessel relationship: part_of UBERON:0002470 ! autopod [Term] id: UBERON:0004563 name: forelimb digital vein synonym: "forelimb digital veins" EXACT [MA:0002120] xref: MA:0002120 is_a: UBERON:0003515 ! implied link automatically realized ! forelimb blood vessel is_a: UBERON:0004562 ! implied link automatically realized ! digital vein relationship: part_of UBERON:0002102 intersection_of: UBERON:0004562 ! digital vein intersection_of: part_of UBERON:0002102 ! forelimb [Term] id: UBERON:0004564 name: hindlimb digital vein def: "A digital vein that is part of a hindlimb [Obol]." [OBOL:automatic] synonym: "hindlimb digital veins" EXACT [MA:0002133] xref: MA:0002133 is_a: UBERON:0003516 ! implied link automatically realized ! hindlimb blood vessel is_a: UBERON:0004562 ! implied link automatically realized ! digital vein relationship: part_of UBERON:0002103 intersection_of: UBERON:0004562 ! digital vein intersection_of: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0004571 name: systemic arterial system def: "the part of the cardiovascular system which carries oxygenated blood away from the heart to the body, and returns deoxygenated blood back to the heart." [Wikipedia:Systemic_circulation#Arteries] synonym: "Systemic arterial circulatory system" EXACT [FMA:45623] xref: FMA:45623 is_a: UBERON:0007798 {source="MA-inferred"} ! vascular system relationship: part_of UBERON:0004572 ! arterial system [Term] id: UBERON:0004572 name: arterial system def: "The arterial system is the higher-pressure portion of the circulatory system." [BTO:0004690] xref: BTO:0004690 xref: EHDAA:396 xref: EHDAA2:0000143 xref: EMAPA:16201 xref: EMAPA:16371 xref: MA:0002719 xref: OG:0000273 xref: SCTID:362030008 is_a: UBERON:0007798 {source="MA"} ! vascular system relationship: part_of UBERON:0004535 {source="EHDAA2"} ! cardiovascular system [Term] id: UBERON:0004573 name: systemic artery def: "Systemic arteries are the arteries of the systemic circulation, which is the part of the cardiovascular system which carries oxygenated blood away from the heart, to the body, and returns deoxygenated blood back to the heart." [Wikipedia:Artery#Systemic_arteries] synonym: "Systemic arterial subtree" EXACT [FMA:66464] xref: FMA:66464 is_a: UBERON:0001637 ! implied link automatically realized ! artery relationship: part_of UBERON:0004571 intersection_of: UBERON:0001637 ! artery intersection_of: part_of UBERON:0004571 ! systemic arterial system [Term] id: UBERON:0004581 name: systemic venous system def: "Subdivision of cardiovascular system which has as its parts the right side of heart, the superior vena cava and the inferior vena cava[FMA] In human anatomy, the systemic venous system refers to veins that drain into the right atrium without passing through two vascular beds (i.e. they originate from a set of capillaries and do not pass through a second set of capillaries before reaching the right side of the heart). The term systemic venous system is often used to differentiate veins from veins that drain the pulmonary system (the pulmonary venous system) and veins that drain the digestive tract (the portal venous system). Large veins that are considered part of the systemic venous system are the: Superior vena cava; Inferior vena cava[WP]." [FMA:45626, Wikipedia:Systemic_venous_system] synonym: "Systemic venous circulatory system" EXACT [FMA:45626] xref: BTO:0004692 xref: EHDAA:486 xref: EHDAA2:0002171 xref: FMA:45626 xref: ncithesaurus:Venous_System xref: OG:0000277 is_a: UBERON:0002049 ! vasculature relationship: part_of UBERON:0004582 ! venous system [Term] id: UBERON:0004582 name: venous system synonym: "vein system" EXACT [] xref: BTO:0004692 xref: EHDAA:486 xref: EHDAA2:0002171 xref: EMAPA:16240 xref: MA:0002720 xref: ncithesaurus:Venous_System xref: OG:0000277 xref: SCTID:362060003 is_a: UBERON:0007798 {source="MA"} ! vascular system [Term] id: UBERON:0004590 name: sphincter muscle def: "a structure, usually a circular muscle, that normally maintains constriction of a natural body passage or orifice and which relaxes as required by normal physiological functioning." [Wikipedia:Sphincter] comment: FMA class is not a subtype of muscle synonym: "circular muscle" RELATED [] synonym: "sphincter" EXACT [] xref: FMA:75004 xref: ncithesaurus:Sphincter is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0004601 name: rib 1 def: "The first rib is the most curved and usually the shortest of all the ribs; it is broad and flat, its surfaces looking upward and downward, and its borders inward and outward. The head is small, rounded, and possesses only a single articular facet, for articulation with the body of the first thoracic vertebra. The neck is narrow and rounded. The tubercle, thick and prominent, is placed on the outer border. There is no angle, but at the tubercle the rib is slightly bent, with the convexity upward, so that the head of the bone is directed downward. The upper surface of the body is marked by two shallow grooves, separated from each other by a slight ridge prolonged internally into a tubercle, the scalene tubercle, for the attachment of the Scalenus anterior; the anterior groove transmits the subclavian vein, the posterior the subclavian artery and the lowest trunk of the brachial plexus. Behind the posterior groove is a rough area for the attachment of the Scalenus medius. The under surface is smooth, and destitute of a costal groove. The outer border is convex, thick, and rounded, and at its posterior part gives attachment to the first digitation of the Serratus anterior. The inner border is concave, thin, and sharp, and marked about its center by the scalene tubercle. The anterior extremity is larger and thicker than that of any of the other ribs. [WP,unvetted]." [Wikipedia:First_rib] comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series synonym: "Costa prima (I)" EXACT [FMA:7597] synonym: "first rib" EXACT [FMA:7597] xref: FMA:7597 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fa/Gray124.png/200px-Gray124.png xref: MA:0001401 xref: ncithesaurus:Rib_1 xref: SCTID:182016005 is_a: UBERON:0002228 ! rib [Term] id: UBERON:0004602 name: rib 2 def: "The second rib is much longer than the first, but has a very similar curvature. The non-articular portion of the tubercle is occasionally only feebly marked. The angle is slight, and situated close to the tubercle. The body is not twisted, so that both ends touch any plane surface upon which it may be laid; but there is a bend, with its convexity upward, similar to, though smaller than that found in the first rib. The body is not flattened horizontally like that of the first rib. Its external surface is convex, and looks upward and a little outward; near the middle of it is a rough eminence for the origin of the lower part of the first and the whole of the second digitation of the Serratus anterior; behind and above this is attached the Scalenus posterior. The internal surface, smooth, and concave, is directed downward and a little inward: on its posterior part there is a short costal groove. [WP,unvetted]." [Wikipedia:Second_rib] comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series synonym: "Costa secunda (II)" EXACT [FMA:7620] synonym: "second rib" EXACT [FMA:7620] xref: FMA:7620 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a5/Gray125.png/200px-Gray125.png xref: MA:0001402 xref: ncithesaurus:Rib_2 xref: SCTID:244656007 is_a: UBERON:0002228 ! rib [Term] id: UBERON:0004603 name: rib 3 comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series synonym: "third rib" EXACT [FMA:7638] xref: FMA:7638 xref: MA:0001403 xref: ncithesaurus:Rib_3 xref: SCTID:244658008 is_a: UBERON:0002228 ! rib [Term] id: UBERON:0004604 name: rib 4 comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series synonym: "fourth rib" EXACT [FMA:7749] xref: FMA:7749 xref: MA:0001404 xref: ncithesaurus:Rib_4 xref: SCTID:244659000 is_a: UBERON:0002228 ! rib [Term] id: UBERON:0004605 name: rib 5 comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series synonym: "fifth rib" EXACT [FMA:7776] xref: FMA:7776 xref: MA:0001405 xref: ncithesaurus:Rib_5 xref: SCTID:244660005 is_a: UBERON:0002228 ! rib [Term] id: UBERON:0004606 name: rib 6 comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series synonym: "sixth rib" EXACT [FMA:8147] xref: FMA:8147 xref: MA:0001406 xref: ncithesaurus:Rib_6 xref: SCTID:244661009 is_a: UBERON:0002228 ! rib [Term] id: UBERON:0004607 name: rib 7 comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series synonym: "seventh rib" EXACT [FMA:7830] xref: FMA:7830 xref: MA:0001407 xref: ncithesaurus:Rib_7 xref: SCTID:244662002 is_a: UBERON:0002228 ! rib [Term] id: UBERON:0004608 name: rib 9 comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series synonym: "ninth rib" EXACT [FMA:8337] xref: FMA:8337 xref: MA:0001409 xref: ncithesaurus:Rib_9 xref: SCTID:244664001 is_a: UBERON:0002228 ! rib is_a: UBERON:0002238 ! false rib [Term] id: UBERON:0004609 name: rib 10 def: "The tenth rib has only a single articular facet on its head. [WP,unvetted]." [Wikipedia:Tenth_rib] comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series synonym: "tenth rib" EXACT [FMA:8418] xref: FMA:8418 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8d/Gray126.png/200px-Gray126.png xref: MA:0001410 xref: ncithesaurus:Rib_10 xref: SCTID:244665000 is_a: UBERON:0002228 ! rib is_a: UBERON:0002238 ! false rib [Term] id: UBERON:0004610 name: rib 11 def: "The eleventh rib has a single articular facet on the head, which is of rather large size. It has no necks or tubercles, and is pointed at its anterior ends. The eleventh has a slight angle and a shallow costal groove. [WP,unvetted]." [Wikipedia:Eleventh_rib] comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series synonym: "eleventh rib" EXACT [FMA:8499] xref: FMA:8499 xref: MA:0001411 xref: ncithesaurus:Rib_11 xref: SCTID:244666004 is_a: UBERON:0002228 ! rib is_a: UBERON:0002239 ! floating rib [Term] id: UBERON:0004611 name: rib 12 def: "In humans: The twelfth rib has a single articular facet on the head, which is of rather large size. It has no necks or tubercles, and is pointed at its anterior ends. The twelfth has angle nor costal groove; it is much shorter than the eleventh rib, and its head is inclined slightly downward. Sometimes the twelfth rib is even shorter than the first rib. [WP,unvetted]." [Wikipedia:Twelfth_rib] comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series synonym: "twelfth rib" EXACT [FMA:8515] xref: FMA:8515 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Gray128.png/200px-Gray128.png xref: MA:0001412 xref: ncithesaurus:Rib_12 xref: SCTID:244667008 is_a: UBERON:0002228 ! rib is_a: UBERON:0002239 ! floating rib [Term] id: UBERON:0004612 name: cervical vertebra 3 comment: elements are to be defined spatially/topologically. all mammals have 7 cervical vertebrae subset: defined_by_ordinal_series synonym: "C3 vertebra" EXACT [FMA:12521] synonym: "third cervical vertebra" EXACT [FMA:12521] xref: EMAPA:19433 xref: FMA:12521 xref: MA:0001423 xref: ncithesaurus:C3_Vertebra xref: SCTID:181823007 is_a: UBERON:0002413 ! cervical vertebra [Term] id: UBERON:0004613 name: cervical vertebra 4 comment: elements are to be defined spatially/topologically. all mammals have 7 cervical vertebrae subset: defined_by_ordinal_series synonym: "C4 vertebra" EXACT [FMA:12522] synonym: "fourth cervical vertebra" EXACT [FMA:12522] xref: EMAPA:19434 xref: FMA:12522 xref: MA:0001424 xref: ncithesaurus:C4_Vertebra xref: SCTID:181824001 is_a: UBERON:0002413 ! cervical vertebra [Term] id: UBERON:0004614 name: cervical vertebra 5 comment: elements are to be defined spatially/topologically. all mammals have 7 cervical vertebrae subset: defined_by_ordinal_series synonym: "C5 vertebra" EXACT [FMA:12523] synonym: "fifth cervical vertebra" EXACT [FMA:12523] xref: EMAPA:19435 xref: FMA:12523 xref: MA:0001425 xref: ncithesaurus:C5_Vertebra xref: SCTID:181825000 is_a: UBERON:0002413 ! cervical vertebra [Term] id: UBERON:0004615 name: cervical vertebra 6 comment: elements are to be defined spatially/topologically. all mammals have 7 cervical vertebrae subset: defined_by_ordinal_series synonym: "C6 vertebra" EXACT [FMA:12524] synonym: "sixth cervical vertebra" EXACT [FMA:12524] xref: EMAPA:19466 xref: FMA:12524 xref: MA:0001426 xref: ncithesaurus:C6_Vertebra xref: SCTID:181826004 is_a: UBERON:0002413 ! cervical vertebra [Term] id: UBERON:0004616 name: cervical vertebra 7 comment: elements are to be defined spatially/topologically. all mammals have 7 cervical vertebrae subset: defined_by_ordinal_series synonym: "C7 vertebra" EXACT [FMA:12525] synonym: "Prominent vertebra" EXACT [FMA:12525] synonym: "seventh cervical vertebra" EXACT [FMA:12525] synonym: "Vertebra prominens (CVII)" EXACT [FMA:12525] xref: EMAPA:19467 xref: FMA:12525 xref: MA:0001427 xref: ncithesaurus:C7_Vertebra xref: SCTID:181827008 is_a: UBERON:0002413 ! cervical vertebra [Term] id: UBERON:0004617 name: lumbar vertebra 1 comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series synonym: "first lumbar vertebra" EXACT [FMA:13072] synonym: "L1 vertebra" EXACT [FMA:13072] xref: EMAPA:19472 xref: FMA:13072 xref: MA:0001428 xref: ncithesaurus:L1_Vertebra xref: SCTID:181841004 is_a: UBERON:0002414 ! lumbar vertebra [Term] id: UBERON:0004618 name: lumbar vertebra 2 comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series synonym: "L2 vertebra" EXACT [FMA:13073] synonym: "second lumbar vertebra" EXACT [FMA:13073] xref: EMAPA:19570 xref: FMA:13073 xref: MA:0001429 xref: ncithesaurus:L2_Vertebra xref: SCTID:181842006 is_a: UBERON:0002414 ! lumbar vertebra [Term] id: UBERON:0004619 name: lumbar vertebra 3 comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series synonym: "L3 vertebra" EXACT [FMA:13074] synonym: "third lumbar vertebra" EXACT [FMA:13074] xref: EMAPA:19571 xref: FMA:13074 xref: MA:0001430 xref: ncithesaurus:L3_Vertebra xref: SCTID:181843001 is_a: UBERON:0002414 ! lumbar vertebra [Term] id: UBERON:0004620 name: lumbar vertebra 4 comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series synonym: "fourth lumbar vertebra" EXACT [FMA:13075] synonym: "L4 vertebra" EXACT [FMA:13075] xref: EMAPA:19572 xref: FMA:13075 xref: MA:0001431 xref: ncithesaurus:L4_Vertebra xref: SCTID:181844007 is_a: UBERON:0002414 ! lumbar vertebra [Term] id: UBERON:0004621 name: lumbar vertebra 5 comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series synonym: "fifth lumbar vertebra" EXACT [FMA:13076] synonym: "L5 vertebra" EXACT [FMA:13076] xref: EMAPA:19573 xref: FMA:13076 xref: MA:0001432 xref: ncithesaurus:L5_Vertebra xref: SCTID:181845008 is_a: UBERON:0002414 ! lumbar vertebra [Term] id: UBERON:0004622 name: sacral vertebra 1 comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series synonym: "First sacral segment" EXACT [FMA:13077] synonym: "first sacral vertebra" EXACT [FMA:13077] synonym: "First segment of sacrum" EXACT [FMA:13077] synonym: "S1 vertebra" EXACT [FMA:13077] xref: FMA:13077 xref: MA:0001434 xref: ncithesaurus:S1_Vertebra xref: SCTID:181846009 is_a: UBERON:0001094 ! sacral vertebra [Term] id: UBERON:0004623 name: sacral vertebra 2 comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series synonym: "S2 vertebra" EXACT [FMA:13078] synonym: "Second sacral segment" EXACT [FMA:13078] synonym: "second sacral vertebra" EXACT [FMA:13078] synonym: "Second segment of sacrum" EXACT [FMA:13078] xref: FMA:13078 xref: MA:0001435 xref: ncithesaurus:S2_Vertebra xref: SCTID:181847000 is_a: UBERON:0001094 ! sacral vertebra [Term] id: UBERON:0004624 name: sacral vertebra 3 comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series synonym: "S3 vertebra" EXACT [FMA:13079] synonym: "Third sacral segment" EXACT [FMA:13079] synonym: "third sacral vertebra" EXACT [FMA:13079] synonym: "Third segment of sacrum" EXACT [FMA:13079] xref: EMAPA:19590 xref: FMA:13079 xref: MA:0001436 xref: ncithesaurus:S3_Vertebra xref: SCTID:181848005 is_a: UBERON:0001094 ! sacral vertebra [Term] id: UBERON:0004625 name: sacral vertebra 4 comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series synonym: "Fourth sacral segment" EXACT [FMA:13080] synonym: "fourth sacral vertebra" EXACT [FMA:13080] synonym: "Fourth segment of sacrum" EXACT [FMA:13080] synonym: "S4 vertebra" EXACT [FMA:13080] xref: EMAPA:19591 xref: FMA:13080 xref: MA:0001437 xref: ncithesaurus:S4_Vertebra xref: SCTID:181849002 is_a: UBERON:0001094 ! sacral vertebra [Term] id: UBERON:0004626 name: thoracic vertebra 1 comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series synonym: "First dorsal vertebra" EXACT [FMA:9165] synonym: "first thoracic vertebra" EXACT [FMA:9165] synonym: "T1 vertebra" EXACT [FMA:9165] xref: EMAPA:19542 xref: FMA:9165 xref: MA:0001438 xref: ncithesaurus:T1_Vertebra xref: SCTID:181828003 is_a: UBERON:0002347 ! thoracic vertebra [Term] id: UBERON:0004627 name: thoracic vertebra 2 comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series synonym: "Second dorsal vertebra" EXACT [FMA:9187] synonym: "second thoracic vertebra" EXACT [FMA:9187] synonym: "T2 vertebra" EXACT [FMA:9187] xref: EMAPA:19543 xref: FMA:9187 xref: MA:0001439 xref: ncithesaurus:T2_Vertebra xref: SCTID:181829006 is_a: UBERON:0002347 ! thoracic vertebra [Term] id: UBERON:0004628 name: thoracic vertebra 3 comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series synonym: "T3 vertebra" EXACT [FMA:9209] synonym: "Third dorsal vertebra" EXACT [FMA:9209] synonym: "third thoracic vertebra" EXACT [FMA:9209] xref: EMAPA:19544 xref: FMA:9209 xref: MA:0001440 xref: ncithesaurus:T3_Vertebra xref: SCTID:181830001 is_a: UBERON:0002347 ! thoracic vertebra [Term] id: UBERON:0004629 name: thoracic vertebra 4 comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series synonym: "Fourth dorsal vertebra" EXACT [FMA:9248] synonym: "fourth thoracic vertebra" EXACT [FMA:9248] synonym: "T4 vertebra" EXACT [FMA:9248] xref: EMAPA:19545 xref: FMA:9248 xref: MA:0001441 xref: ncithesaurus:T4_Vertebra xref: SCTID:181831002 is_a: UBERON:0002347 ! thoracic vertebra [Term] id: UBERON:0004630 name: thoracic vertebra 5 comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series synonym: "Fifth dorsal vertebra" EXACT [FMA:9922] synonym: "fifth thoracic vertebra" EXACT [FMA:9922] synonym: "T5 vertebra" EXACT [FMA:9922] xref: EMAPA:19546 xref: FMA:9922 xref: MA:0001442 xref: ncithesaurus:T5_Vertebra xref: SCTID:181832009 is_a: UBERON:0002347 ! thoracic vertebra [Term] id: UBERON:0004631 name: thoracic vertebra 6 comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series synonym: "Sixth dorsal vertebra" EXACT [FMA:9945] synonym: "sixth thoracic vertebra" EXACT [FMA:9945] synonym: "T6 vertebra" EXACT [FMA:9945] xref: EMAPA:19547 xref: FMA:9945 xref: MA:0001443 xref: ncithesaurus:T6_Vertebra xref: SCTID:181834005 is_a: UBERON:0002347 ! thoracic vertebra [Term] id: UBERON:0004632 name: thoracic vertebra 7 comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series synonym: "Seventh dorsal vertebra" EXACT [FMA:9968] synonym: "seventh thoracic vertebra" EXACT [FMA:9968] synonym: "T7 vertebra" EXACT [FMA:9968] xref: EMAPA:19548 xref: FMA:9968 xref: MA:0001444 xref: ncithesaurus:T7_Vertebra xref: SCTID:181835006 is_a: UBERON:0002347 ! thoracic vertebra [Term] id: UBERON:0004633 name: thoracic vertebra 9 comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series synonym: "Ninth dorsal vertebra" EXACT [FMA:10014] synonym: "ninth thoracic vertebra" EXACT [FMA:10014] synonym: "T9 vertebra" EXACT [FMA:10014] xref: EMAPA:19550 xref: FMA:10014 xref: MA:0001446 xref: ncithesaurus:T9_Vertebra xref: SCTID:181837003 is_a: UBERON:0002347 ! thoracic vertebra [Term] id: UBERON:0004634 name: thoracic vertebra 10 comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series synonym: "T10 vertebra" EXACT [FMA:10037] synonym: "Tenth dorsal vertebra" EXACT [FMA:10037] synonym: "tenth thoracic vertebra" EXACT [FMA:10037] xref: EMAPA:19551 xref: FMA:10037 xref: MA:0001447 xref: ncithesaurus:T10_Vertebra xref: SCTID:181838008 is_a: UBERON:0002347 ! thoracic vertebra [Term] id: UBERON:0004635 name: thoracic vertebra 11 comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series synonym: "Eleventh dorsal vertebra" EXACT [FMA:10059] synonym: "eleventh thoracic vertebra" EXACT [FMA:10059] synonym: "T11 vertebra" EXACT [FMA:10059] xref: EMAPA:19552 xref: FMA:10059 xref: MA:0001448 xref: ncithesaurus:T11_Vertebra xref: SCTID:181839000 is_a: UBERON:0002347 ! thoracic vertebra [Term] id: UBERON:0004636 name: thoracic vertebra 12 comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series synonym: "T12 vertebra" EXACT [FMA:10081] synonym: "Twelfth dorsal vertebra" EXACT [FMA:10081] synonym: "twelfth thoracic vertebra" EXACT [FMA:10081] xref: EMAPA:19553 xref: FMA:10081 xref: MA:0001449 xref: ncithesaurus:T12_Vertebra xref: SCTID:181840003 is_a: UBERON:0002347 ! thoracic vertebra [Term] id: UBERON:0004637 name: otic capsule def: "The cartilage capsule surrounding the inner ear mechanism; in elasmobranchs, it remains cartilaginous in the adult; in the embryos of higher vertebrates, it is cartilaginous at first but later becomes bony (at approximately 23 weeks in humans)[Biology-Online]. Bilaterally paired cartilage encasing the semicircular canals of the inner ear[ZFA]." [http://medical-dictionary.thefreedictionary.com/otic+capsule, http://www.biology-online.org/dictionary/Otic_capsule, ZFA:0001500] comment: otic capsule goes to CS20 in EHDAA2, and until adult in ZFA synonym: "otic capsule" EXACT [ZFA:0001500] synonym: "otic capsule cartilage condensation" EXACT [EHDAA2:0001333] synonym: "periotic capsule" RELATED [MA:0000252] xref: AAO:0010143 xref: EHDAA:4704 xref: EHDAA2:0001333 xref: EMAPA:17596 xref: OG:0000854 xref: SCTID:361515007 is_a: UBERON:0000032 ! implied link automatically realized ! cranial structure is_a: UBERON:0004765 ! skeletal element relationship: part_of UBERON:0001694 {source="EHDAA2"} ! petrous part of temporal bone relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0001846 ! internal ear [Term] id: UBERON:0004638 name: blood vessel endothelium def: "An endothelium that lines the blood vasculature. Other endothelia may line lymph vessels, the heart" [UBERON:cjm] subset: vertebrate_core xref: BTO:0000766 xref: MA:0000709 xref: ncithesaurus:Blood_Vessel_Endothelium xref: ZFA:0005257 is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004852 ! implied link automatically realized ! cardiovascular system endothelium relationship: part_of UBERON:0001981 intersection_of: UBERON:0001986 ! endothelium intersection_of: part_of UBERON:0001981 ! blood vessel [Term] id: UBERON:0004639 name: afferent arteriole def: "The afferent arterioles are a group of blood vessels that supply the nephrons in many excretory systems. They play an important role in the regulation of blood pressure. The afferent arterioles branch from the renal artery which supplies blood to the kidneys. The afferent arterioles later diverge into the capillaries of the glomerulus. When renal blood flow is reduced, the macula densa releases prostaglandins, which cause the juxtaglomerular cells lining the afferent arterioles to release renin, activating the renin-angiotensin-aldosterone system, to increase blood pressure. [WP,unvetted]." [Wikipedia:Afferent_arterioles] subset: vertebrate_core synonym: "kidney afferent arteriole" EXACT [MP:0011312] xref: EMAPA:28230 xref: EMAPA:28266 xref: MA:0002579 xref: MP:0011312 xref: SCTID:67498004 xref: ZFA:0005307 is_a: UBERON:0001231 ! implied link automatically realized ! nephron tubule is_a: UBERON:0001980 ! arteriole is_a: UBERON:0003644 ! implied link automatically realized ! kidney arterial blood vessel relationship: part_of UBERON:0001229 ! renal corpuscle [Term] id: UBERON:0004640 name: efferent arteriole def: "The efferent arterioles are blood vessels that are part of the urinary tract of organisms. The efferent arterioles form from a convergence of the capillaries of the glomerulus. They play an important role in maintaining the glomerular filtration rate despite fluctuations in blood pressure. In the mammalian kidney they follow two markedly different courses, depending on the location of the glomeruli from which they arise. In the mammalian kidney about 15% of glomeruli lie close to the boundary between the renal cortex and renal medulla and are known as juxtamedullary glomeruli. The rest are simply undifferentiated cortical glomeruli. [WP,unvetted]." [Wikipedia:Efferent_arteriole] subset: vertebrate_core synonym: "kidney efferent arteriole" EXACT [MP:0011313] xref: EMAPA:28233 xref: EMAPA:28275 xref: MA:0002585 xref: SCTID:29926005 xref: ZFA:0005308 is_a: UBERON:0001231 ! implied link automatically realized ! nephron tubule is_a: UBERON:0001980 ! arteriole is_a: UBERON:0003644 ! implied link automatically realized ! kidney arterial blood vessel relationship: part_of UBERON:0001229 ! renal corpuscle [Term] id: UBERON:0004641 name: spleen capsule def: "A capsule that is part of a spleen [Obol]." [OBOL:automatic] synonym: "capsule of spleen" EXACT [FMA:15849] synonym: "fibroelastic coat of spleen" EXACT [FMA:15849] synonym: "fibrous capsule of spleen" EXACT [FMA:15849] synonym: "Malpighian capsule" EXACT [FMA:15849] synonym: "splenic capsule" EXACT [FMA:15849] synonym: "tunica fibrosa (splen)(lien)" EXACT [FMA:15849] xref: FMA:15849 xref: MA:0000753 xref: ncithesaurus:Splenic_Capsule xref: SCTID:329635002 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003893 ! implied link automatically realized ! capsule relationship: part_of UBERON:0002106 intersection_of: UBERON:0003893 ! capsule intersection_of: part_of UBERON:0002106 ! spleen [Term] id: UBERON:0004642 name: third ventricle ependyma def: "An ependyma that is part of a third ventricle [Obol]." [OBOL:automatic] synonym: "3rd ventricle ependyma" EXACT [MA:0000882] synonym: "ependyma of third ventricle" EXACT [MA:0000882] xref: FMA:242833 xref: MA:0000882 xref: SCTID:362316006 is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon is_a: UBERON:0005357 ! implied link automatically realized ! brain ependyma relationship: part_of UBERON:0002286 intersection_of: UBERON:0004670 ! ependyma intersection_of: part_of UBERON:0002286 ! third ventricle [Term] id: UBERON:0004643 name: lateral ventricle ependyma def: "An ependyma that is part of a lateral ventricle [Obol]." [OBOL:automatic] synonym: "ependyma of lateral ventricle" EXACT [FMA:242825] xref: FMA:242825 xref: MA:0000964 xref: ncithesaurus:Lateral_Ventricle_Ependyma xref: SCTID:369275002 is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon is_a: UBERON:0005357 ! implied link automatically realized ! brain ependyma relationship: part_of UBERON:0002285 intersection_of: UBERON:0004670 ! ependyma intersection_of: part_of UBERON:0002285 ! lateral ventricle [Term] id: UBERON:0004644 name: fourth ventricle ependyma def: "An ependyma that is part of a fourth ventricle [Obol]." [OBOL:automatic] synonym: "4th ventricle ependyma" RELATED [MA:0000986] synonym: "ependyma of fourth ventricle" EXACT [FMA:242835] xref: FMA:242835 xref: MA:0000986 xref: ncithesaurus:Fourth_Ventricle_Ependyma xref: SCTID:369277005 is_a: UBERON:0005357 ! implied link automatically realized ! brain ependyma relationship: part_of UBERON:0002422 intersection_of: UBERON:0004670 ! ependyma intersection_of: part_of UBERON:0002422 ! fourth ventricle [Term] id: UBERON:0004645 name: urinary bladder urothelium synonym: "bladder transitional cell epithelium" EXACT [FMA:15936] synonym: "transitional epithelium" RELATED [MA:0001693] synonym: "transitional epithelium of urinary bladder" EXACT [FMA:15936] synonym: "urinary bladder transitional epithelium" EXACT [FMA:15936] synonym: "urothelium" BROAD [BTO:0001245] synonym: "urothelium of urinary bladder" EXACT [FMA:15936] xref: BTO:0001694 xref: FMA:15936 xref: MA:0001693 xref: ncithesaurus:Transitional_Epithelium xref: SCTID:25631003 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000365 ! implied link automatically realized ! urothelium is_a: UBERON:0003350 ! implied link automatically realized ! epithelium of mucosa relationship: part_of UBERON:0001255 intersection_of: UBERON:0000365 ! urothelium intersection_of: part_of UBERON:0001255 ! urinary bladder relationship: part_of UBERON:0001259 ! mucosa of urinary bladder [Term] id: UBERON:0004646 name: infraorbital artery def: "The infraorbital artery is an artery in the head that runs in the maxilla, emerging through the infraorbital foramen, just under the orbit of the eye. [WP,unvetted]." [Wikipedia:Infraorbital_artery] synonym: "infra-orbital artery" EXACT [FMA:49767] xref: FMA:49767 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/aa/Gray511.png/200px-Gray511.png xref: MA:0001977 xref: ncithesaurus:Infraorbital_Artery xref: SCTID:148167004 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0001637 ! artery is_a: UBERON:0005911 ! implied link automatically realized ! endo-epithelium relationship: branch_of UBERON:0001616 ! maxillary artery [Term] id: UBERON:0004647 name: liver lobule synonym: "hepatic lobule" EXACT [FMA:14471] synonym: "lobulus hepaticus" EXACT [FMA:14471] xref: FMA:14471 xref: MA:0002494 xref: ncithesaurus:Hepatic_Lobule xref: SCTID:362194004 is_a: UBERON:0000064 {source="FMA"} ! organ part is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0001280 {source="FMA"} ! liver parenchyma [Term] id: UBERON:0004648 name: esophagus muscularis mucosa synonym: "esophagus muscularis mucosae" EXACT [] synonym: "lamina muscularis of esophageal mucous membrane" EXACT [FMA:63059] synonym: "muscularis mucosae of esophagus" EXACT [FMA:63059] xref: FMA:63059 xref: MA:0002681 xref: ncithesaurus:Esophageal_Muscularis_Mucosa xref: SCTID:47720007 is_a: UBERON:0002112 ! implied link automatically realized ! smooth muscle of esophagus is_a: UBERON:0006676 ! implied link automatically realized ! muscularis mucosa relationship: part_of UBERON:0001043 intersection_of: UBERON:0006676 ! muscularis mucosa intersection_of: part_of UBERON:0001043 ! esophagus relationship: part_of UBERON:0002469 ! esophagus mucosa [Term] id: UBERON:0004649 name: sphenoid bone pterygoid process def: "The pterygoid processes of the sphenoid, one on either side, descend perpendicularly from the regions where the body and great wings unite. Each process consists of a medial pterygoid plate and a lateral pterygoid plate, the upper parts of which are fused anteriorly; a vertical sulcus, the pterygopalatine groove, descends on the front of the line of fusion. The plates are separated below by an angular cleft, the pterygoid fissure (or pterygoid notch), the margins of which are rough for articulation with the pyramidal process of the palatine bone. The two plates diverge behind and enclose between them a V-shaped fossa, the pterygoid fossa, which contains pterygoideus internus and tensor veli palatini. Above this fossa is a small, oval, shallow depression, the scaphoid fossa, which gives origin to the tensor veli palatini. The anterior surface of the pterygoid process is broad and triangular near its root, where it forms the posterior wall of the pterygopalatine fossa and presents the anterior orifice of the pterygoid canal." [Wikipedia:Pterygoid_processes_of_the_sphenoid] comment: todo - check AAO:0000521-pterygoid and MA:0001471-pterygoid bone. MA also has 'inner plate of pterygoid process' as a syn for MA:0001471, FMA has lateral/medial plates. Seems likely inner = lateral (see MP:0004452). synonym: "processus pterygoideus" EXACT [FMA:54682] synonym: "processus pterygoideus ossis sphenoidalis" EXACT [FMA:54682, FMA:TA] synonym: "pterygoid plate" RELATED [Wikipedia:Pterygoid_processes_of_the_sphenoid] synonym: "pterygoid process" RELATED [Wikipedia:Pterygoid_processes_of_the_sphenoid] synonym: "pterygoid process" EXACT [FMA:54682] synonym: "pterygoid process of sphenoid" EXACT [FMA:54682] synonym: "pterygoid process of sphenoid bone" RELATED [MA:0002774] synonym: "pterygoid process of sphenoid bone" EXACT [FMA:54682] synonym: "pterygoid processes" RELATED [Wikipedia:Pterygoid_processes_of_the_sphenoid] synonym: "pterygoid processus" RELATED [Wikipedia:Pterygoid_processes_of_the_sphenoid] xref: AAO:0010086 xref: FMA:54682 xref: MA:0002774 xref: SCTID:140390001 is_a: UBERON:0004529 ! anatomical projection is_a: UBERON:0004530 ! implied link automatically realized ! bony projection relationship: part_of UBERON:0001677 ! sphenoid bone [Term] id: UBERON:0004650 name: tongue keratinized epithelium synonym: "keratinized epithelium of tongue" EXACT [FMA:74865] xref: FMA:74865 xref: MA:0002787 is_a: UBERON:0006919 ! tongue squamous epithelium [Term] id: UBERON:0004651 name: scapula spine def: "a prominent plate of bone, which crosses obliquely the medial four-fifths of the scapula at its upper part, and separates the supra- from the infraspinatous fossa." [Wikipedia:Spine_of_scapula] synonym: "scapular spine" RELATED [MA:0002806] synonym: "Scapular spine" EXACT [FMA:13453] synonym: "spine of scapula" EXACT [FMA:13453] xref: EMAPA:25123 xref: FMA:13453 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a6/Gray205_left_scapula_lateral_view.png/200px-Gray205_left_scapula_lateral_view.png xref: MA:0002806 xref: SCTID:181916005 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001124 ! tetrapod scapula [Term] id: UBERON:0004652 name: humerus diaphysis synonym: "body of humerus" EXACT [FMA:13305] synonym: "corpus humeri" EXACT [FMA:13305, FMA:TA] synonym: "diaphysis of humerus" EXACT [FMA:13305] synonym: "humeral diaphysis" EXACT [FMA:13305] synonym: "shaft of humerus" EXACT [FMA:13305] xref: EMAPA:25051 xref: FMA:13305 xref: MA:0002807 xref: SCTID:181927007 is_a: UBERON:0004769 ! implied link automatically realized ! diaphysis relationship: part_of UBERON:0000976 intersection_of: UBERON:0004769 ! diaphysis intersection_of: part_of UBERON:0000976 ! humerus [Term] id: UBERON:0004654 name: temporal process of zygomatic bone def: "The temporal process of the zygomatic bone, directed backward and medialward, is concave, presenting medially a rough, triangular area, for articulation with the maxilla, and laterally a smooth, concave surface, the upper part of which forms the anterior boundary of the temporal fossa, the lower a part of the infratemporal fossa. Near the center of this surface is the zygomaticotemporal foramen for the transmission of the zygomaticotemporal nerve." [Wikipedia:Temporal_process_of_the_zygomatic_bone] synonym: "processus temporalis (os zygomaticum)" EXACT [FMA:52904] synonym: "zygomatic bone temporal process" EXACT [MA:0002812] xref: EMAPA:19015 xref: FMA:52904 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/da/Gray166.png/200px-Gray166.png xref: MA:0002812 xref: SCTID:122772003 is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0004529 ! anatomical projection is_a: UBERON:0004530 ! implied link automatically realized ! bony projection relationship: part_of UBERON:0001683 ! zygomatic bone relationship: part_of UBERON:0002500 ! zygomatic arch [Term] id: UBERON:0004655 name: zygomatic process of temporal bone alt_id: UBERON:0004653 def: "The zygomatic process of the temporal bone is a long, arched process projecting from the lower part of the squamous portion of the temporal bone. It articulates with the zygomatic bone. This process is at first directed lateralward, its two surfaces looking upward and downward; it then appears as if twisted inward upon itself, and runs forward, its surfaces now looking medialward and lateralward." [Wikipedia:Zygomatic_process_of_temporal_bone] synonym: "processus zygomaticus" EXACT [FMA:52886] synonym: "temporal bone zygomatic process" EXACT [MA:0002811] synonym: "temporal zygomatic process" EXACT [FMA:52886] xref: EMAPA:19015 xref: FMA:52886 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/96/Gray137.png/200px-Gray137.png xref: MA:0002811 xref: SCTID:414110008 is_a: UBERON:0004529 ! anatomical projection is_a: UBERON:0004530 ! implied link automatically realized ! bony projection relationship: part_of UBERON:0001678 ! temporal bone relationship: part_of UBERON:0002500 ! zygomatic arch [Term] id: UBERON:0004657 name: mandible condylar process def: "The posterior process on the ramus of the mandible composed of two parts: a superior part, the articular portion, and an inferior part, the condylar neck." [BTO:0001750, Wikipedia:Mandibular_condyle] synonym: "condylar process of mandible" EXACT [FMA:52836] synonym: "mandibular condyle" EXACT [BTO:0001750] synonym: "mandibular condyloid process" RELATED [MA:0002816] synonym: "Processus condylaris" EXACT [FMA:52836] xref: BTO:0001750 xref: FMA:52836 xref: GAID:219 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b1/Processuscondylarismandibulae.PNG/200px-Processuscondylarismandibulae.PNG xref: MA:0002816 xref: MESH:A.02.835.232.781.324.502.632.600 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0004529 ! anatomical projection is_a: UBERON:0004530 ! implied link automatically realized ! bony projection relationship: part_of UBERON:0000401 ! mandibular ramus relationship: part_of UBERON:0001684 ! mandible [Term] id: UBERON:0004658 name: mandible head synonym: "head of mandible" EXACT [FMA:59331] synonym: "Mandibular head" EXACT [FMA:59331] xref: FMA:59331 xref: MA:0002817 xref: SCTID:51354009 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001684 ! mandible relationship: part_of UBERON:0004657 ! mandible condylar process [Term] id: UBERON:0004659 name: mandible neck synonym: "Mandibular neck" EXACT [FMA:59332] synonym: "neck of mandible" EXACT [FMA:59332] xref: FMA:59332 xref: MA:0002818 xref: SCTID:368875004 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0001560 ! neck of organ relationship: part_of UBERON:0001684 ! mandible relationship: part_of UBERON:0004657 ! mandible condylar process [Term] id: UBERON:0004660 name: mandible coronoid process synonym: "coronoid process of mandible" EXACT [FMA:52833] synonym: "mandibular coronoid process" RELATED [MA:0002819] synonym: "Processus coronoideus (mandibula)" EXACT [FMA:52833] xref: FMA:52833 xref: MA:0002819 xref: SCTID:244691004 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0004529 ! anatomical projection is_a: UBERON:0004530 ! implied link automatically realized ! bony projection relationship: part_of UBERON:0000401 ! mandibular ramus relationship: part_of UBERON:0001684 ! mandible [Term] id: UBERON:0004661 name: mandible temporal crest synonym: "Crista temporalis (Mandibulae)" EXACT [FMA:59484] synonym: "temporal crest of mandible" EXACT [FMA:59484] xref: FMA:59484 xref: MA:0002820 is_a: UBERON:0000064 ! organ part is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure relationship: part_of UBERON:0000401 ! mandibular ramus relationship: part_of UBERON:0001684 ! mandible [Term] id: UBERON:0004662 name: vertebra lamina synonym: "lamina arcus vertebrae" EXACT [FMA:11951, FMA:TA] synonym: "lamina of vertebra" EXACT [FMA:11951] synonym: "lamina of vertebral arch" EXACT [FMA:11951] synonym: "neural arch lamina" EXACT [AAO:0000695] synonym: "vertebral lamina" RELATED [MA:0002876] synonym: "vertebral lamina" EXACT [FMA:11951] xref: AAO:0000695 xref: FMA:11951 xref: MA:0002876 xref: SCTID:277423002 is_a: UBERON:0000063 ! organ segment is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0002412 ! vertebra relationship: part_of UBERON:0003861 ! vertebral arch [Term] id: UBERON:0004663 name: aorta wall def: "An anatomical wall that is part of an aorta [Obol]." [OBOL:automatic] synonym: "Aortic wall" EXACT [FMA:14156] synonym: "wall of aorta" EXACT [FMA:14156] xref: FMA:14156 xref: MA:0002901 is_a: UBERON:0000415 ! implied link automatically realized ! artery wall relationship: part_of UBERON:0000947 intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0000947 ! aorta [Term] id: UBERON:0004664 name: aorta tunica adventitia synonym: "tunica adventitia of aorta" EXACT [FMA:14283] xref: FMA:14283 xref: MA:0002902 xref: SCTID:24996002 is_a: UBERON:0007240 ! implied link automatically realized ! tunica adventitia of artery relationship: part_of UBERON:0000947 intersection_of: UBERON:0005734 ! tunica adventitia intersection_of: part_of UBERON:0000947 ! aorta relationship: part_of UBERON:0004663 ! aorta wall [Term] id: UBERON:0004665 name: seminal vesicle muscle layer def: "A portion of muscle tissue that is part of a seminal vesicle [Obol]." [OBOL:automatic] synonym: "muscle layer of seminal vesicle" EXACT [FMA:19404] synonym: "Muscular coat of seminal gland" EXACT [FMA:19404] synonym: "Muscular layer of seminal gland" EXACT [FMA:19404] synonym: "Tunica muscularis (Vesicula seminalis)" EXACT [FMA:19404] synonym: "tunica muscularis glandulae vesiculosae" EXACT [FMA:19404, FMA:TA] xref: EMAPA:29773 xref: FMA:19404 xref: MA:0002913 is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure is_a: UBERON:0006660 ! implied link automatically realized ! muscle layer relationship: part_of UBERON:0000998 intersection_of: UBERON:0006660 ! muscle layer intersection_of: part_of UBERON:0000998 ! seminal vesicle [Term] id: UBERON:0004666 name: interventricular septum membranous part synonym: "membranous interventricular septum" RELATED [MA:0002939] synonym: "Membranous interventricular septum" EXACT [FMA:7135] synonym: "membranous part of interventricular septum" EXACT [FMA:7135] synonym: "Membranous portion of interventricular septum" EXACT [FMA:7135] synonym: "Pars membranacea (septi interventricularis)" EXACT [FMA:7135] xref: EHDAA2:0004596 xref: EMAPA:18246 xref: FMA:7135 xref: MA:0002939 xref: OG:0000927 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0002094 ! interventricular septum [Term] id: UBERON:0004667 name: interventricular septum muscular part def: "A portion of muscle tissue that is part of a interventricular septum [Obol]." [OBOL:automatic] synonym: "muscular interventricular septum" RELATED [MA:0002940] synonym: "Muscular interventricular septum" EXACT [FMA:7134] synonym: "muscular part of interventricular septum" EXACT [FMA:7134] synonym: "Pars muscularis (septi interventricularis)" EXACT [FMA:7134] xref: EHDAA:2607 xref: EHDAA2:0000888 xref: EMAPA:18247 xref: FMA:7134 xref: MA:0002940 is_a: UBERON:0002385 ! implied link automatically realized ! muscle tissue relationship: part_of UBERON:0002094 intersection_of: UBERON:0002385 ! muscle tissue intersection_of: part_of UBERON:0002094 ! interventricular septum [Term] id: UBERON:0004668 name: fourth ventricle aperture def: "An orifice that is part of a fourth ventricle [Obol]." [OBOL:automatic] synonym: "aperture of fourth ventricle" EXACT [FMA:242766] xref: FMA:242766 xref: MA:0002945 is_a: UBERON:0000161 ! implied link automatically realized ! orifice is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain relationship: part_of UBERON:0002422 intersection_of: UBERON:0000161 ! orifice intersection_of: part_of UBERON:0002422 ! fourth ventricle [Term] id: UBERON:0004670 name: ependyma def: "Ependymal epithelium lining the ventricular cavities and canals of the CNS is simple, columnar or cuboidal." [BTO:0000401] comment: FMA has ependyma proper and ependyma, not defined synonym: "ependyma of neuraxis" RELATED [FMA:242791] synonym: "ependymal epithelium" RELATED [BTO:0000401] synonym: "lamina epithelialis" RELATED [FMA:242791] xref: BTO:0000401 xref: FMA:242791 xref: GAID:608 xref: MESH:A.08.186.211.276.460 xref: ncithesaurus:Ependyma xref: SCTID:12766003 is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system is_a: UBERON:0000483 ! implied link automatically realized ! epithelium relationship: part_of UBERON:0005358 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0005358 ! ventricle of nervous system [Term] id: UBERON:0004671 name: gyrus rectus synonym: "gyrus rectus" EXACT [NIF_GrossAnatomy:birnlex_1103] synonym: "medial part of gyri orbitales" EXACT [FMA:61893] synonym: "rectal gyrus" EXACT [FMA:61893] synonym: "rectus gyrus" EXACT [FMA:61893] synonym: "straight gyrus" EXACT [FMA:61893] xref: FMA:61893 xref: NIF_GrossAnatomy:birnlex_1103 xref: SCTID:279206004 is_a: UBERON:0002791 ! regional part of telencephalon is_a: UBERON:0003022 ! lobe parts of cerebral cortex relationship: part_of UBERON:0001870 ! frontal cortex relationship: part_of UBERON:0001950 ! neocortex [Term] id: UBERON:0004672 name: posterior horn lateral ventricle synonym: "cornu posterius ventriculi lateralis" EXACT [FMA:83700, FMA:TA] synonym: "occipital horn" EXACT [NIF_GrossAnatomy:birnlex_1297] synonym: "occipital horn of lateral ventricle" EXACT [FMA:83700] synonym: "posterior horn lateral ventricle" EXACT [NIF_GrossAnatomy:birnlex_1297] synonym: "posterior horn of lateral ventricle" EXACT [FMA:83700] synonym: "posterior horn of the lateral ventricle" EXACT [NIF_GrossAnatomy:birnlex_1297] xref: FMA:83700 xref: ncithesaurus:Occipital_Horn_of_the_Lateral_Ventricle xref: NIF_GrossAnatomy:birnlex_1297 xref: SCTID:362314009 is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon is_a: UBERON:0004086 ! brain ventricle relationship: part_of UBERON:0002285 ! lateral ventricle [Term] id: UBERON:0004673 name: trigeminal nerve root comment: TODO - check ZFA synonym: "root of trigeminal nerve" EXACT [FMA:52610] synonym: "root of trigeminal V nerve" EXACT [Obol:cjm] synonym: "trigeminal nerve root" EXACT [NIF_GrossAnatomy:birnlex_1346] synonym: "trigeminal neural root" EXACT [FMA:52610] xref: FMA:52610 xref: NIF_GrossAnatomy:birnlex_1346 xref: SCTID:280185007 xref: ZFA:0000192 is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon is_a: UBERON:0004733 ! implied link automatically realized ! segmental subdivision of hindbrain is_a: UBERON:0006843 {source="FMA"} ! root of cranial nerve relationship: continuous_with UBERON:0001645 intersection_of: UBERON:0002211 ! nerve root intersection_of: continuous_with UBERON:0001645 ! trigeminal nerve relationship: part_of UBERON:0001895 ! metencephalon [Term] id: UBERON:0004674 name: facial nerve root synonym: "central part of facial nerve" EXACT [FMA:53418] synonym: "facial nerve fibers" EXACT [FMA:53418] synonym: "facial nerve root" EXACT [NIF_GrossAnatomy:birnlex_1513] synonym: "facial neural root" EXACT [FMA:53418] synonym: "root of facial nerve" EXACT [FMA:53418] xref: FMA:53418 xref: NIF_GrossAnatomy:birnlex_1513 xref: SCTID:280186008 is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon is_a: UBERON:0004733 ! implied link automatically realized ! segmental subdivision of hindbrain is_a: UBERON:0006843 {source="FMA"} ! root of cranial nerve relationship: continuous_with UBERON:0001647 intersection_of: UBERON:0002211 ! nerve root intersection_of: continuous_with UBERON:0001647 ! facial nerve relationship: part_of UBERON:0001895 ! metencephalon [Term] id: UBERON:0004675 name: hypoglossal nerve root synonym: "central part of hypoglossal nerve" EXACT [FMA:72632] synonym: "hypoglossal nerve fibers" EXACT [FMA:72632] synonym: "hypoglossal nerve root" EXACT [NIF_GrossAnatomy:birnlex_1588] synonym: "hypoglossal nerve tract" EXACT [FMA:72632] synonym: "root of hypoglossal nerve" EXACT [FMA:72632] xref: FMA:72632 xref: NIF_GrossAnatomy:birnlex_1588 is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0004733 ! implied link automatically realized ! segmental subdivision of hindbrain is_a: UBERON:0006843 {source="FMA"} ! root of cranial nerve relationship: continuous_with UBERON:0001650 intersection_of: UBERON:0002211 ! nerve root intersection_of: continuous_with UBERON:0001650 ! hypoglossal nerve relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0004676 name: spinal cord lateral horn def: "a triangular field that is a lateralward projection of the postero-lateral part of the anterior column[WP, modified by cjm]." [Wikipedia:Lateral_horn_of_spinal_cord] comment: todo - check relationship to spinal cord lateral column. in FMA funiculus=white and horn=grep synonym: "intermediate gray column of spinal cord" EXACT [FMA:256536] synonym: "intermediate grey column of spinal cord" EXACT [FMA:256536] synonym: "lateral gray column of spinal cord" EXACT [FMA:256536] synonym: "lateral gray horn" EXACT [NIF_GrossAnatomy:birnlex_2666] synonym: "lateral gray matter of spinal cord" EXACT [FMA:256536] synonym: "lateral horn of spinal cord" EXACT [FMA:256536] synonym: "spinal cord intermediate horn" EXACT [NIF_GrossAnatomy:birnlex_2666] synonym: "spinal cord lateral horn" EXACT [NIF_GrossAnatomy:birnlex_2666] xref: FMA:256536 xref: ncithesaurus:Lateral_Horn_of_the_Spinal_Cord xref: NIF_GrossAnatomy:birnlex_2666 is_a: UBERON:0002315 {source="FMA"} ! gray matter of spinal cord [Term] id: UBERON:0004677 name: spinal cord gray commissure def: "The gray commissure is a thin strip of gray matter that surrounds the central canal of the spinal cord and, along with the anterior white commissure, connects the two halves of the cord. It comprises lamina X in the Rexed classification." [Wikipedia:Gray_commissure] synonym: "gray commissure of spinal cord" EXACT [FMA:77036] synonym: "spinal cord gray commissure" EXACT [NIF_GrossAnatomy:birnlex_2669] synonym: "spinal cord grey commissure" EXACT [Obol:automatic] xref: FMA:77036 xref: NIF_GrossAnatomy:birnlex_2669 is_a: UBERON:0001020 {notes="check-me"} ! commissure is_a: UBERON:0002315 {source="FMA"} ! gray matter of spinal cord is_a: UBERON:0008882 ! implied link automatically realized ! spinal cord commissure [Term] id: UBERON:0004678 name: apex of spinal cord dorsal horn synonym: "apex cornu posterioris medullae spinalis" EXACT [FMA:256700, FMA:TA] synonym: "apex of dorsal gray column" EXACT [FMA:256700] synonym: "apex of dorsal gray column of spinal cord" EXACT [FMA:256700] synonym: "apex of dorsal horn of spinal cord" EXACT [FMA:256700] synonym: "apex of posterior horn of spinal cord" EXACT [FMA:256700] synonym: "apex of spinal cord dorsal horn" EXACT [NIF_GrossAnatomy:birnlex_2670] synonym: "apex of spinal cord posterior horn" EXACT [NIF_GrossAnatomy:birnlex_2670] xref: FMA:256700 xref: NIF_GrossAnatomy:birnlex_2670 is_a: UBERON:0002315 ! gray matter of spinal cord [Term] id: UBERON:0004679 name: dentate gyrus molecular layer synonym: "dentate gyrus molecular layer" EXACT [NIF_GrossAnatomy:birnlex_4127] synonym: "molecular layer of dentate gyrus" EXACT [FMA:83677] xref: FMA:83677 xref: NIF_GrossAnatomy:birnlex_4127 is_a: UBERON:0002304 ! layer of dentate gyrus relationship: part_of UBERON:0001885 ! dentate gyrus of hippocampal formation [Term] id: UBERON:0004680 name: body of fornix def: "The columns (anterior pillars; fornicolumns) of the fornix arch downward in front of the interventricular foramen and behind the anterior commissure, and each descends through the gray substance in the lateral wall of the third ventricle to the base of the brain, where it ends in the corpus mammillare. [WP,unvetted]." [Wikipedia:Columns_of_fornix] synonym: "body of fornix" EXACT [NIF_GrossAnatomy:birnlex_739] synonym: "body of fornix of forebrain" EXACT [FMA:61968] synonym: "column of fornix" EXACT [FMA:61968] synonym: "columna fornicis" EXACT [FMA:61968, FMA:TA] synonym: "fornix body" EXACT [FMA:61968] xref: FMA:61968 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/21/Gray747.png/200px-Gray747.png xref: NIF_GrossAnatomy:birnlex_739 is_a: UBERON:0002316 ! white matter is_a: UBERON:0002780 ! regional part of forebrain is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter [Term] id: UBERON:0004681 name: vestibular system def: "The vestibular system, which contributes to our balance and our sense of spatial orientation, is the sensory system that provides the dominant input about movement and equilibrioception. Together with the cochlea, a part of the auditory system, it constitutes the labyrinth of the inner ear, situated in the vestibulum in the inner ear. As our movements consist of rotations and translations, the vestibular system comprises two components: the semicircular canal system, which indicate rotational movements; and the otoliths, which indicate linear accelerations. The vestibular system sends signals primarily to the neural structures that control our eye movements, and to the muscles that keep us upright. The projections to the former provide the anatomical basis of the vestibulo-ocular reflex, which is required for clear vision; and the projections to the muscles that control our posture are necessary to keep us upright." [Wikipedia:Vestibular_system] comment: note that FMA and NIF have no part information for this class. This is a GAT in FMA synonym: "vestibular organ system" EXACT [FMA:7193] synonym: "vestibular system" EXACT [NIF_GrossAnatomy:nlx_anat_090819] xref: BTO:0003381 xref: FMA:7193 xref: NIF_GrossAnatomy:nlx_anat_090819 xref: SCTID:361533001 is_a: UBERON:0001032 ! implied link automatically realized ! sensory system [Term] id: UBERON:0004682 name: corona radiata def: "For the structure in embryology, see Corona radiata (embryology) In neuroanatomy, the corona radiata is a white matter sheet that continues caudally as the internal capsule and rostrally as the centrum semiovale. This sheet of axons contains both descending and ascending axons that carry nearly all of the neural traffic from and to the cerebral cortex. The corona radiata is associated with the corticospinal tract, the corticopontine tract, and the corticobulbar tract. [WP,unvetted]." [Wikipedia:Corona_radiata] synonym: "corona radiata" EXACT [NIF_GrossAnatomy:nlx_anat_090903] xref: FMA:18661 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/26/Gray745.png/200px-Gray745.png xref: NIF_GrossAnatomy:nlx_anat_090903 is_a: UBERON:0002316 ! white matter is_a: UBERON:0002791 ! regional part of telencephalon is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter [Term] id: UBERON:0004683 name: parasubiculum synonym: "parasubicular area" EXACT [NIF_GrossAnatomy:nlx_anat_091002] synonym: "parasubiculum" EXACT [NIF_GrossAnatomy:nlx_anat_091002] xref: ABA:PAR xref: BM:Tel-Cx-PASB xref: FMA:77604 xref: NIF_GrossAnatomy:nlx_anat_091002 is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: spatially_disjoint_from UBERON:0001953 {source="ABA"} ! presubiculum relationship: spatially_disjoint_from UBERON:0002191 {source="ABA"} ! subiculum relationship: spatially_disjoint_from UBERON:0002728 {source="ABA"} ! entorhinal area [Term] id: UBERON:0004684 name: raphe nuclei def: "Thin plates of cells in and immediately adjacent to the sagittal plane[NIF]. A moderate-size cluster of nuclei found in the brain stem. Their main function is to release serotonin to the rest of the brain. Selective serotonin reuptake inhibitor (SSRI) antidepressants are believed to act in these nuclei, as well as at their targets. The raphe nuclei are traditionally considered to be the medial portion of the reticular formation, and they appear as a ridge of cells in the center and most medial portion of the brain stem." [https://sourceforge.net/tracker/?func=detail&aid=3248146&group_id=36855&atid=440764, NIF_GrossAnatomy:nlx_anat_20090205, Wikipedia:Raphe_nuclei] comment: we treat NR obscurus, NR magnus etc as parts of the raphe nuclei. This is consistent with treatment in FMA, where the class is 'set of raphe nuclei' subset: vertebrate_core synonym: "nuclei raphes" EXACT [FMA:84017, FMA:TA] synonym: "raphe cluster" RELATED [Wikipedia:Raphe_nuclei] synonym: "raphe nuclei" EXACT [NIF_GrossAnatomy:nlx_anat_20090205] synonym: "raphe nuclei" EXACT [FMA:84017] synonym: "raphe nuclei set" EXACT [FMA:84017] synonym: "raphe nucleus" RELATED [ZFA:0001429] xref: FMA:84017 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/94/Gray694.png/200px-Gray694.png xref: MESH:A.08.186.211.132.659.632 xref: NIF_GrossAnatomy:nlx_anat_20090205 xref: ZFA:0001429 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002275 {source="GO", source="Wikipedia"} ! reticular formation [Term] id: UBERON:0004685 name: middle temporal area def: "Brodmann area 21, or BA21, is part of the temporal cortex in the human brain. The region encompasses most of the lateral temporal cortex, a region believed to play a part in auditory processing and language. Language function is left lateralized in most individuals. BA21 is superior to BA20 and inferior to BA40 and BA41. This area is also known as middle temporal area 21. It is a subdivision of the cytoarchitecturally defined temporal region of cerebral cortex. In the human it corresponds approximately to the middle temporal gyrus. It is bounded rostrally by the temporopolar area 38 (H), ventrally by the inferior temporal area 20, caudally by the occipitotemporal area 37 (H), and dorsally by the superior temporal area 22 (Brodmann-1909). [WP,unvetted]." [Wikipedia:Brodmann_area_21] synonym: "area 21 of Brodmann" EXACT [FMA:68618] synonym: "Brodmann area 21" EXACT [] synonym: "middle temporal area" EXACT [NIF_GrossAnatomy:nlx_anat_20090308] synonym: "middle temporal area" EXACT [FMA:68618] xref: FMA:68618 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e8/Brodmann_area_21.png/200px-Brodmann_area_21.png xref: NIF_GrossAnatomy:nlx_anat_20090308 is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0004686 name: gastro-splenic ligament def: "peritoneum connecting the greater curvature of stomach with the hilum of the spleen[umich]. part of the greater omentum; derived from the dorsal mesogastrium in the embryo." [http://anatomy.med.umich.edu/gastrointestinal_system/stomach_tables.html, Wikipedia:Gastrosplenic_ligament] comment: in MA, EMAPA and EHDAA2 this is part of the dorsal mesogastrium. In wikipedia, and the above source, it is derived from the DM. This is a generic ligament in MA, we infer this and assert that this is a nonskeletal ligament synonym: "gastrolienal ligament" EXACT [FMA:16517] synonym: "gastrosplenc ligament" EXACT [FMA:16517] synonym: "gastrosplenic ligament" EXACT [FMA:16517] synonym: "ligamentum gastrosplenicum" EXACT [Wikipedia:Gastrosplenic_ligament] xref: EHDAA:9160 xref: EHDAA2:0000702 xref: EMAPA:18285 xref: EMAPA:18905 xref: FMA:16517 xref: http://upload.wikimedia.org/wikipedia/commons/8/8d/Gray1039.png xref: MA:0001619 xref: OG:0000354 xref: SCTID:260636005 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003567 ! implied link automatically realized ! abdomen connective tissue is_a: UBERON:0008845 {source="MA-propagated"} ! nonskeletal ligament relationship: develops_from UBERON:0005602 {source="MA-modified", source="Wikipedia"} ! dorsal mesogastrium relationship: part_of UBERON:0005448 {source="FMA", source="Wikipedia"} ! greater omentum [Term] id: UBERON:0004687 name: lieno-renal ligament def: "peritoneum that attaches the spleen to the posterior abdominal wall over the left kidney. develops from the dorsal mesogastrium of the embryo[umich]" [http://anatomy.med.umich.edu/gastrointestinal_system/peritoneum_tables.html, Wikipedia:Splenorenal_ligament] comment: Multiple sources support greater omentum assignment. E.g. http://medical-dictionary.thefreedictionary.com/splenorenal+ligament. We change the MA part_of assignment to develops_from synonym: "lienorenal ligament" EXACT [FMA:16522] synonym: "ligamentum lienorenale" EXACT [FMA:16522, FMA:TA] synonym: "ligamentum splenorenale (lienorenale, phrenicosplenicum)" EXACT [FMA:16522] synonym: "phrenicolienal ligament" EXACT [FMA:16522] synonym: "splenicorenal ligament" EXACT [FMA:16522] synonym: "splenorenal ligament" EXACT [FMA:16522] xref: EHDAA2:0004572 xref: EMAPA:18286 xref: EMAPA:18906 xref: FMA:16522 xref: MA:0001620 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003567 ! implied link automatically realized ! abdomen connective tissue is_a: UBERON:0008845 {source="MA-propagated"} ! nonskeletal ligament relationship: develops_from UBERON:0005602 {source="MA-modified"} ! dorsal mesogastrium relationship: part_of UBERON:0005448 {source="FMA"} ! greater omentum [Term] id: UBERON:0004688 name: costo-cervical trunk def: "The costocervical trunk arises from the upper and back part of the subclavian artery, behind the scalenus anterior on the right side, and medial to that muscle on the left side. Passing backward, it splits into the deep cervical artery and the supreme intercostal artery (or the Highest intercostal artery), which descends behind the pleura in front of the necks of the first and second ribs, and anastomoses with the first aortic intercostal (3rd posterior intercostal artery). As it crosses the neck of the first rib it lies medial to the anterior division of the first thoracic nerve, and lateral to the first thoracic ganglion of the sympathetic trunk. In the first intercostal space, it gives off a branch which is distributed in a manner similar to the distribution of the aortic intercostals. The branch for the second intercostal space usually joins with one from the highest aortic intercostal artery. This branch is not constant, but is more commonly found on the right side; when absent, its place is supplied by an intercostal branch from the aorta. Each intercostal gives off a posterior branch which goes to the posterior vertebral muscles, and sends a small spinal branch through the corresponding intervertebral foramen to the medulla spinalis and its membranes. [WP,unvetted]." [Wikipedia:Costocervical_trunk] synonym: "costocervical trunk" EXACT [FMA:10636] synonym: "trunk of costocervical artery" EXACT [FMA:10636] xref: FMA:10636 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b3/Costocervical_trunk_with_branches.png/200px-Costocervical_trunk_with_branches.png xref: MA:0001939 xref: SCTID:244225009 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0004689 name: naso-frontal vein synonym: "nasofrontal vein" EXACT [FMA:51729] xref: FMA:51729 xref: MA:0002182 xref: SCTID:44840002 is_a: UBERON:0001638 ! vein relationship: tributary_of UBERON:0003712 {source="FMA/obol"} ! cavernous sinus relationship: tributary_of UBERON:0005486 {source="FMA/obol"} ! venous dural sinus [Term] id: UBERON:0004690 name: pancreatico-duodenal vein synonym: "pancreaticoduodenal vein" EXACT [FMA:15398] synonym: "Superior posterior pancreaticoduodenal vein" EXACT [FMA:15398] synonym: "vena pancreaticoduodenalis superior posterior" EXACT [FMA:15398, FMA:TA] xref: FMA:15398 xref: MA:0002190 xref: ncithesaurus:Pancreatico-Duodenal_Vein xref: SCTID:76262002 is_a: UBERON:0001638 ! vein relationship: tributary_of UBERON:0001138 {source="FMA/obol"} ! superior mesenteric vein [Term] id: UBERON:0004691 name: bulbourethral gland secretion synonym: "bulbo-urethral gland secretion" EXACT [FMA:62968] synonym: "secretion of bulbo-urethral gland" EXACT [FMA:62968] xref: FMA:62968 xref: MA:0002524 xref: ncithesaurus:Bulbourethral_Gland_Secretion is_a: UBERON:0006530 ! seminal fluid is_a: UBERON:0006540 ! implied link automatically realized ! exocrine gland fluid/secretion relationship: secreted_by UBERON:0002366 ! bulbo-urethral gland [Term] id: UBERON:0004692 name: external naris epithelium def: "An epithelium that is part of a naris [Obol]." [OBOL:automatic] xref: EMAPA:18596 xref: MA:0001321 is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system is_a: UBERON:0004807 ! implied link automatically realized ! respiratory system epithelium relationship: part_of UBERON:0005928 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0005928 ! external naris [Term] id: UBERON:0004693 name: peyer's patch epithelium def: "An epithelium that is part of a Peyer ' s patch [Obol]." [OBOL:automatic] xref: MA:0000731 is_a: UBERON:0001277 ! implied link automatically realized ! intestinal epithelium relationship: part_of UBERON:0001211 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001211 ! Peyer's patch [Term] id: UBERON:0004694 name: harderian gland epithelium def: "An epithelium that is part of a Harderian gland [Obol]." [OBOL:automatic] xref: MA:0001248 is_a: UBERON:0007625 ! implied link automatically realized ! pigment epithelium of eye relationship: part_of UBERON:0004187 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0004187 ! Harderian gland [Term] id: UBERON:0004695 name: arterial system smooth muscle def: "A portion of smooth muscle tissue that is part of an arterial system [Obol]." [OBOL:automatic] xref: MA:0000704 is_a: UBERON:0001135 ! implied link automatically realized ! smooth muscle tissue relationship: part_of UBERON:0004572 intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0004572 ! arterial system [Term] id: UBERON:0004696 name: venous system smooth muscle def: "A portion of smooth muscle tissue that is part of a venous system [Obol]." [OBOL:automatic] xref: MA:0000715 is_a: UBERON:0004237 ! implied link automatically realized ! blood vessel smooth muscle relationship: part_of UBERON:0004582 intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0004582 ! venous system relationship: part_of UBERON:0004237 ! blood vessel smooth muscle [Term] id: UBERON:0004697 name: peyer's patch germinal center xref: MA:0000734 is_a: UBERON:0001745 ! implied link automatically realized ! secondary nodular lymphoid tissue is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: part_of UBERON:0001211 intersection_of: UBERON:0001745 ! secondary nodular lymphoid tissue intersection_of: part_of UBERON:0001211 ! Peyer's patch [Term] id: UBERON:0004698 name: vena cava endothelium def: "An endothelium that is part of a vena cava [Obol]." [OBOL:automatic] xref: MA:0000713 xref: ncithesaurus:Vena_Cava_Endothelium is_a: UBERON:0001919 ! implied link automatically realized ! endothelium of vein relationship: part_of UBERON:0004087 intersection_of: UBERON:0001986 ! endothelium intersection_of: part_of UBERON:0004087 ! vena cava [Term] id: UBERON:0004699 name: outflow tract endothelium def: "An endothelium that is part of a outflow tract [Obol]." [OBOL:automatic] xref: MA:0000490 is_a: UBERON:0008307 ! implied link automatically realized ! heart endothelium relationship: part_of UBERON:0004145 intersection_of: UBERON:0001986 ! endothelium intersection_of: part_of UBERON:0004145 ! outflow tract [Term] id: UBERON:0004700 name: arterial system endothelium def: "An endothelium that is part of an arterial system [Obol]." [OBOL:automatic] xref: MA:0000703 xref: ncithesaurus:Arterial_System_Endothelium is_a: UBERON:0004852 ! implied link automatically realized ! cardiovascular system endothelium relationship: part_of UBERON:0004572 intersection_of: UBERON:0001986 ! endothelium intersection_of: part_of UBERON:0004572 ! arterial system [Term] id: UBERON:0004701 name: venous system endothelium def: "An endothelium that is part of a venous system [Obol]." [OBOL:automatic] xref: MA:0000714 xref: ncithesaurus:Venous_System_Endothelium is_a: UBERON:0004852 ! implied link automatically realized ! cardiovascular system endothelium relationship: part_of UBERON:0004582 intersection_of: UBERON:0001986 ! endothelium intersection_of: part_of UBERON:0004582 ! venous system [Term] id: UBERON:0004702 name: respiratory system blood vessel endothelium def: "A blood vessel endothelium that is part of a respiratory system [Obol]." [OBOL:automatic] xref: MA:0001805 is_a: UBERON:0004638 ! implied link automatically realized ! blood vessel endothelium is_a: UBERON:0004807 ! implied link automatically realized ! respiratory system epithelium relationship: part_of UBERON:0001004 intersection_of: UBERON:0004638 ! blood vessel endothelium intersection_of: part_of UBERON:0001004 ! respiratory system relationship: part_of UBERON:0003504 ! respiratory system blood vessel [Term] id: UBERON:0004703 name: dorsal thalamus comment: MA and ZFA think there is a distinct dorsal thalamus, but FMA says its an exact synonym. TODO. http://www.ncbi.nlm.nih.gov/pubmed/8167659 subset: vertebrate_core synonym: "dorsal thalamus" RELATED [FMA:62007] synonym: "thalamus, pars dorsalis" EXACT [ZFA:0000653] xref: BM:Die-Th xref: MA:0000180 xref: ncithesaurus:Dorsal_Thalamus xref: ZFA:0000653 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001897 ! thalamus [Term] id: UBERON:0004704 name: bone fossa def: "a depression or hollow in a bone[WP]." [Wikipedia:Fossa#Anatomy] comment: General Anatomical term in FMA subset: vertebrate_core synonym: "fossa" EXACT [] xref: AAO:0010439 xref: FMA:45791 xref: ncithesaurus:Fossa xref: ZFA:0005388 is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0001474 ! bone [Term] id: UBERON:0004705 name: fenestra def: "an opening in the skull or other bones[WP]." [Wikipedia:Fenestra] comment: TODO check fenestra vs fossa. fenestra = hole, fossa = depression with bottom? is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0001474 ! bone [Term] id: UBERON:0004706 name: bulbus cordis def: "The bulbus cordis lies ventral to the primitive ventricle after the developing heart assumes its S-shaped form. Together, the bulbus cordis and the primitive ventricle give rise to the ventricle of the formed heart. The adjacent walls of the bulbus cordis and ventricle approximate, fuse, and finally disappear, and the bulbus cordis now communicates freely with the right ventricle, while the junction of the bulbus with the truncus arteriosus is brought directly ventral to and applied to the atrial canal. By the upgrowth of the ventricular septum the bulbus cordis is in great measure separated from the left ventricle, but remains an integral part of the right ventricle, of which it forms the infundibulum[WP]." [Wikipedia:Bulbus_cordis] comment: todo - check ZFA subset: vertebrate_core synonym: "primitive right ventricle endocardium" EXACT [EHDAA2:0000197, JB:def] xref: EHDAA:438 xref: EHDAA:768 xref: EHDAA2:0000197 xref: EMAPA:16216 xref: EMAPA:16333 xref: FMA:70300 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c9/Gray466.png/200px-Gray466.png xref: ncithesaurus:Bulbus_Cordis xref: SCTID:361525002 xref: ZFA:0000173 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0000948 ! heart [Term] id: UBERON:0004707 name: pharyngula stage def: "A stage that follows the blastula, gastrula and neurula stages. At the pharyngula stage, all vertebrate embryos show remarkable similarities." [Wikipedia:Pharyngula] comment: TODO: check with evo-devo biologists synonym: "pharyngula" RELATED [] synonym: "phylotypic stage" EXACT [] xref: OGES:000006 is_a: UBERON:0000067 ! implied link automatically realized ! embryo stage part is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000068 ! embryo stage relationship: preceded_by UBERON:0000110 ! neurula stage [Term] id: UBERON:0004708 name: limb/fin comment: this class is the union of the classes limb and fin. synonym: "jointed paired lateral appendage" NARROW [UBERON:cjm] synonym: "limb or fin" EXACT [UBERON:cjm] is_a: UBERON:0009872 ! paired appendage [Term] id: UBERON:0004709 name: limb/fin of posterior region of body def: "A limb/fin that is part of a posterior region of body [Obol]." [OBOL:automatic] comment: TODO - as defined, this includes ALL paired fins in the posterior region synonym: "hindlimb/pelvic fin" EXACT [UBERON:cjm] is_a: UBERON:0004708 ! implied link automatically realized ! limb/fin relationship: part_of UBERON:0000154 intersection_of: UBERON:0004708 ! limb/fin intersection_of: part_of UBERON:0000154 ! posterior region of body [Term] id: UBERON:0004710 name: limb/fin of anterior region of body def: "A limb/fin that is part of an anterior region of body [Obol]." [OBOL:automatic] comment: TODO - as defined, this includes ALL paired fins in the anterior region synonym: "forelimb/pectoral fin" EXACT [UBERON:cjm] is_a: UBERON:0004708 ! implied link automatically realized ! limb/fin relationship: part_of UBERON:0000153 intersection_of: UBERON:0004708 ! limb/fin intersection_of: part_of UBERON:0000153 ! anterior region of body [Term] id: UBERON:0004711 name: jugular vein def: "Any one of the several large veins of the neck that drain blood from the head[BTO]. Veins in the neck which drain the brain, face, and neck into the brachiocephalic or subclavian veins[GAID]. The jugular veins are veins that bring deoxygenated blood from the head back to the heart via the superior vena cava[WP]." [BTO:0001744, Wikipedia:Jugular_vein] synonym: "jugular" RELATED [] synonym: "vena jugularis" RELATED [BTO:0001744] xref: BTO:0001744 xref: EMAPA:18638 xref: GAID:536 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f8/Gray558.png/200px-Gray558.png xref: MA:0002154 xref: MESH:A.07.231.908.498 xref: ncithesaurus:Jugular_Vein xref: SCTID:244403000 is_a: UBERON:0001638 ! vein is_a: UBERON:0003502 ! implied link automatically realized ! neck blood vessel relationship: part_of UBERON:0000974 ! neck [Term] id: UBERON:0004713 name: corpus cavernosum penis def: "One of the columns of erectile tissue forming the dorsum and sides of the penis." [BTO:0002019, Wikipedia:Corpus_cavernosum_penis] synonym: "cavernous body of penis" RELATED [BTO:0002019] synonym: "corpus cavernosum" RELATED [BTO:0002019] synonym: "corpus cavernosum of penis" EXACT [FMA:19618] synonym: "corpus sopngiosum penis" RELATED [BTO:0002019] synonym: "corpus spongiosum penis" RELATED [BTO:0002019] synonym: "penile corpus cavernosum" RELATED [BTO:0002019] synonym: "penis erectile tissue" EXACT [MA:0001743] synonym: "spongy body of male urethra" RELATED [BTO:0002019] synonym: "spongy body of penis" RELATED [BTO:0002019] xref: BTO:0002019 xref: EMAPA:29850 xref: EMAPA:29856 xref: FMA:19618 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f6/Gray1155.png/200px-Gray1155.png xref: MA:0001743 xref: ncithesaurus:Penis_Erectile_Tissue xref: Wikipedia:Corpus_cavernosum_penis is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure is_a: UBERON:0006609 ! implied link automatically realized ! corpus cavernosum relationship: part_of UBERON:0000989 intersection_of: UBERON:0006609 ! corpus cavernosum intersection_of: part_of UBERON:0000989 ! penis [Term] id: UBERON:0004714 name: septum pellucidum def: "The septum pellucidum is made up of two thin sheets of mostly glial-like elements that abut each other in the midline and have a potential space between them. Those sheets also separate the left and right lateral ventricles from each other. At the base of the sheets rostrally, however, are the septal nuclei, which are important components of the limbic system.a thin, triangular, vertical membrane separating the lateral ventricles of the brain. It separates the anterior horn of the left and right lateral ventricles. It runs as a sheet from the corpus callosum down to the fornix. When the hemispheres are cut apart, the septum remains on one hemisphere, usually the left. The septum pellucidum is implicated in pleasure, mood, rage, sexual gratification and more. Lesions of the septum lead to sham rage. Stimulation of the medial forebrain bundle (primary efferent of the septum) restores normal behavior." [BTO:0003448, Wikipedia:Septum_pellucidum] synonym: "pellucidum" RELATED [BTO:0003448] synonym: "septum lucidum" RELATED [BTO:0003448] synonym: "supracommissural septum" EXACT [FMA:61844] xref: BTO:0003448 xref: FMA:61844 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4d/Gray732.png/200px-Gray732.png xref: MA:0002979 xref: MESH:A.08.186.211.276.814 xref: ncithesaurus:Septum_Pellucidum xref: NIF_GrossAnatomy:birnlex_1315 xref: SCTID:362313003 xref: Wikipedia:Septum_pellucidum is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0000446 ! septum of telencephalon relationship: part_of UBERON:0002285 ! lateral ventricle [Term] id: UBERON:0004715 name: annulus fibrosus disci intervertebralis def: "The ring of fibrocartilage and fibrous tissue forming the circumference of the intervertebral disc; surrounds the nucleus pulposus, which is prone to herniation when the annulus fibrosus is compromised." [BTO:0003629, Wikipedia:Annulus_fibrosus_disci_intervertebralis] synonym: "annulus fibrosus" BROAD [MA:0000111] synonym: "annulus fibrosus of intervertebral disc" RELATED [BTO:0003629] synonym: "anulus fibrosus (diskus intervertebralis)" EXACT [FMA:13551] synonym: "anulus fibrosus of intervertebral disk" EXACT [FMA:13551] synonym: "fibrous ring of intervertebral disc" RELATED [BTO:0003629] xref: BTO:0003629 xref: FMA:13551 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d9/Cervical_vertebra_english.png/200px-Cervical_vertebra_english.png xref: MA:0000111 xref: Wikipedia:Annulus_fibrosus_disci_intervertebralis is_a: UBERON:0004267 ! implied link automatically realized ! back connective tissue is_a: UBERON:0006444 ! implied link automatically realized ! annulus fibrosus relationship: part_of UBERON:0001066 intersection_of: UBERON:0006444 ! annulus fibrosus intersection_of: part_of UBERON:0001066 ! intervertebral disk [Term] id: UBERON:0004716 name: conceptus def: "The embryo and its adnexa (appendages or adjunct parts) or associated membranes (i.e. the products of conception) The conceptus includes all structures that develop from the zygote, both embryonic and extraembryonic. It includes the embryo as well as the embryonic part of the placenta and its associated membranes - amnion, chorion (gestational sac), and yolk sac[WP]." [BTO:0003834, Wikipedia:Conceptus] xref: AEO:0000194 xref: BTO:0003834 xref: EHDAA2:0000001 xref: EHDAA2:0003235 xref: ncithesaurus:Conceptus xref: Wikipedia:Conceptus is_a: UBERON:0000061 ! anatomical structure relationship: existence_ends_with UBERON:0000068 ! embryo stage relationship: existence_starts_with UBERON:0000068 ! embryo stage relationship: has_part UBERON:0000478 ! extraembryonic structure relationship: has_part UBERON:0002050 ! embryonic structure [Term] id: UBERON:0004717 name: Brodmann area 29 def: "A cytoarchitecturally defined portion of the retrosplenial region of the cerebral cortex. In the human it is a narrow band located in the isthmus of cingulate gyrus. Cytoarchitecturally it is bounded internally by the ectosplenial area 26 and externally by the agranular retrolimbic area 30." [BTO:0003978] synonym: "area 29 of brodmann" EXACT [FMA:68626] synonym: "brodmann's area 29" EXACT [FMA:68626] synonym: "granular retrolimbic area 29" RELATED [BTO:0003978, Wikipedia:Brodmann_area_29] xref: BTO:0003978 xref: FMA:68626 xref: Wikipedia:Brodmann_area_29 is_a: UBERON:0002619 ! regional part of cerebral cortex [Term] id: UBERON:0004718 name: Brodmann area 26 def: "In the human this area is called ectosplenial area 26. It is a cytoarchitecturally defined portion of the retrosplenial region of the cerebral cortex. It is a narrow band located in the isthmus of cingulate gyrus adjacent to the fasciolar gyrus internally. It is bounded externally by the granular retrolimbic area 29." [BTO:0003979] synonym: "area 26 of brodmann" EXACT [FMA:68623] synonym: "ectosplenial area" EXACT [FMA:68623] synonym: "ectosplenial area 26" RELATED [BTO:0003979, Wikipedia:Brodmann_area_26] xref: BTO:0003979 xref: FMA:68623 xref: Wikipedia:Brodmann_area_26 is_a: UBERON:0002619 ! regional part of cerebral cortex [Term] id: UBERON:0004719 name: arcuate vein def: "The arcuate vein is a vessel of the renal circulation. It is located at the border of the renal cortex and renal medulla." [Wikipedia:Arcuate_vein] synonym: "arcuate veins" RELATED [Wikipedia:Arcuate_vein] xref: EMAPA:28221 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Kidney_PioM.png/200px-Kidney_PioM.png xref: MA:0002593 xref: Wikipedia:Arcuate_vein is_a: UBERON:0003517 ! kidney blood vessel [Term] id: UBERON:0004720 name: cerebellar vermis def: "Part of the structure of animal brains, the cerebellar vermis is a narrow, wormlike structure between the hemispheres of the cerebellum." [Wikipedia:Cerebellar_vermis] synonym: "cerebellum vermis" EXACT [FMA:76928] synonym: "vermal parts of the cerebellum" EXACT [NIF_GrossAnatomy:birnlex_1175] synonym: "vermal regions" EXACT [ABA:VERM] synonym: "vermis" RELATED [Wikipedia:Cerebellar_vermis] synonym: "vermis cerebelli [i-x]" EXACT [FMA:76928, FMA:TA] synonym: "vermis of cerebellum" EXACT [FMA:76928] synonym: "vermis of cerebellum [i-x]" EXACT [FMA:76928] xref: ABA:VERM xref: EV:0100298 xref: FMA:76928 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/43/CerebellumDiv.png/200px-CerebellumDiv.png xref: MA:0000202 xref: ncithesaurus:Vermis xref: NIF_GrossAnatomy:birnlex_1175 xref: SCTID:279105006 is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0002749 ! implied link automatically realized ! regional part of cerebellar cortex relationship: part_of UBERON:0002037 ! cerebellum relationship: part_of UBERON:0002129 {source="ABA"} ! cerebellar cortex [Term] id: UBERON:0004721 name: crista ampullaris def: "The crista ampullaris is the sensory organ of rotation located in the semicircular canal of the inner ear. The function of the crista ampullaris is to sense angular acceleration and deceleration." [Wikipedia:Crista_ampullaris] subset: organ_slim synonym: "ampullary crest" RELATED [MA:0002771] synonym: "ampullary crest of semicircular duct" EXACT [FMA:77714] synonym: "cristae ampullares" RELATED [Wikipedia:Crista_ampullaris] xref: FMA:77714 xref: MA:0002771 xref: ncithesaurus:Ampullary_Crest xref: SCTID:368953000 xref: Wikipedia:Crista_ampullaris is_a: UBERON:0000020 ! sense organ is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0004043 {source="MA"} ! semicircular canal ampulla [Term] id: UBERON:0004722 name: deep cervical lymph node def: "The deep cervical lymph nodes are a group of cervical lymph nodes found near the internal jugular vein. They can be divided into upper and lower groups, or superior and inferior groups. Alternatively, they can be divided into deep anterior cervical lymph nodes and deep lateral cervical lymph nodes. They can also be divided into three groups: superior deep jugular, middle deep jugular, and 'inferior deep jugular'." [Wikipedia:Deep_cervical_lymph_nodes] synonym: "lower jugular nodes" RELATED [Wikipedia:Deep_cervical_lymph_nodes] synonym: "middle jugular nodes" RELATED [Wikipedia:Deep_cervical_lymph_nodes] synonym: "upper jugular nodes" RELATED [Wikipedia:Deep_cervical_lymph_nodes] xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b6/Illu_lymph_chain02.jpg/200px-Illu_lymph_chain02.jpg xref: MA:0002885 xref: ncithesaurus:Deep_Cervical_Lymph_Node xref: SCTID:279145002 xref: Wikipedia:Deep_cervical_lymph_nodes is_a: UBERON:0002429 ! cervical lymph node [Term] id: UBERON:0004723 name: interlobular artery def: "the branches of the arcuate arteries of the kidney that radiate outward throught the renal columns and supply the glomeruli[MP]. The first set of renal bloodvessels, the interlobular arteries (or cortical radiate arteries, or cortical radial arteries), are given off at right angles from the side of the arcuate arteries looking toward the cortical substance, and pass directly outward between the medullary rays to reach the fibrous tunic, where they end in the capillary network of this part. These vessels do not anastomose with each other, but form what are called end-arteries. In their outward course they give off lateral branches; these are the afferent vessels for the renal corpuscles; they enter the capsule, and end in the glomerulus. From each tuft the corresponding efferent vessel arises, and, having made its egress from the capsule near to the point where the afferent vessel enters, breaks up into a number of branches, which form a dense plexus within Bowman's capsule." [MP:0011316, Wikipedia:Interlobular_arteries] synonym: "cortical radial arteries" RELATED [Wikipedia:Interlobular_arteries] synonym: "interlobular" RELATED [Wikipedia:Interlobular_arteries] synonym: "kidney interlobular artery" EXACT [MP:0011316] xref: EMAPA:28212 xref: FMA:70498 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/27/Gray1128.png/200px-Gray1128.png xref: MA:0002584 xref: ncithesaurus:Interlobular_Artery xref: Wikipedia:Interlobular_arteries is_a: UBERON:0003644 ! kidney arterial blood vessel [Term] id: UBERON:0004724 name: medial palpebral ligament def: "The medial palpebral ligament (tendo oculi), about 4 mm. in length and 2 mm. in breadth, is attached to the frontal process of the maxilla in front of the lacrimal groove. Crossing the lacrimal sac, it divides into two parts, upper and lower, each attached to the medial end of the corresponding tarsus. As the ligament crosses the lacrimal sac, a strong aponeurotic is given off from its posterior surface; this expands over the sac, and is attached to the posterior lacrimal crest." [Wikipedia:Medial_palpebral_ligament] xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6f/Gray894.png/200px-Gray894.png xref: MA:0001258 xref: ncithesaurus:Medial_Palpebral_Ligament xref: SCTID:280578002 xref: Wikipedia:Medial_palpebral_ligament is_a: UBERON:0000211 ! ligament is_a: UBERON:0003581 ! implied link automatically realized ! eyelid connective tissue relationship: part_of UBERON:0004772 ! eyelid tarsus [Term] id: UBERON:0004725 name: piriform cortex def: "In anatomy of animals, the piriform cortex, or pyriform cortex is a region in the brain. The piriform cortex is part of the rhinencephalon situated in the telencephalon. The function of the piriform cortex relates to olfaction, which is the perception of smells. Sometimes called the olfactory cortex, olfactory lobe or paleopallium, piriform cortical regions are present in the brains of amphibians, reptiles and mammals. The piriform cortex is among three areas that emerge in the telencephalon of amphibians, situated caudally to a dorsal area, which is caudal to a hippocampal area. Farther along the phylogenic timeline, the telencephalic bulb of reptiles as viewed in a cross section of the transverse plane extends with the archipallial hippocampus folding toward the midline and down as the dorsal area begins to form a recognizable cortex. As mammalian cerebrums developed, volume of the dorsal cortex increased in slightly greater proportion, as compared proportionally with increased overall brain volume, until it enveloped the hippocampal regions. Recognized as neopallium or neocortex, enlarged dorsal areas envelop the paleopallial piriform cortex in humans and Old World monkeys. Among taxonomic groupings of mammals, the piriform cortex and the olfactory bulb become proportionally smaller in the brains of phylogenically younger species. The piriform cortex occupies a greater proportion of the overall brain and of the telencephalic brains of insectivores than in primates. The piriform cortex continues to occupy a consistent albeit small and declining proportion of the increasingly large telencephalon in the most recent primate species while the volume of the olfactory bulb becomes less in proportion. It is Brodmann area 27." [Wikipedia:Piriform_cortex] synonym: "piriform area" RELATED [BTO:0002651, MA:0000978] synonym: "piriform lobe" RELATED [BTO:0002651] synonym: "primary olfactory areas" EXACT [NIF_GrossAnatomy:birnlex_2706] synonym: "primary olfactory cortex" RELATED INCONSISTENT [Wikipedia:Piriform_cortex] synonym: "pyriform cortex" RELATED [Wikipedia:Piriform_cortex] synonym: "pyriform lobe" RELATED [Wikipedia:Piriform_cortex] xref: BTO:0002651 xref: EV:0100178 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b1/Human_brainstem_anterior_view_2_description.JPG/200px-Human_brainstem_anterior_view_2_description.JPG xref: MA:0000978 xref: NIF_GrossAnatomy:birnlex_1097 xref: Wikipedia:Piriform_cortex is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon relationship: part_of UBERON:0001893 ! telencephalon relationship: part_of UBERON:0002894 ! olfactory cortex [Term] id: UBERON:0004726 name: vasa recta def: "In the blood supply of the kidney, the vasa recta renis (or straight arteries of kidney, or straight arterioles of kidney) form a series of straight capillaries in the medulla. They lie parallel to the loop of Henle. These vessels branch off the efferent arterioles of juxtamedullary nephrons (those nephrons closest to the medulla), enter the medulla, and surround the loop of Henle." [Wikipedia:Vasa_recta] comment: TODO - is this a vein or set of veins? in MA it is a venous blood vessel synonym: "arteria recta" RELATED [Wikipedia:Vasa_recta] synonym: "arteriae rectae" RELATED [Wikipedia:Vasa_recta] synonym: "arteriolae rectae renis" EXACT [FMA:72006, FMA:TA] synonym: "arteriolae recti" RELATED [Wikipedia:Vasa_recta] synonym: "kidney vasa recta " EXACT [MP:0011324] synonym: "renal medullary capillary" EXACT [EMAPA:30043] synonym: "set of straight arterioles of kidney" EXACT [FMA:72006] synonym: "straight arterioles of kidney" EXACT [FMA:72006] synonym: "vasa recta of kidney" EXACT [FMA:72006] synonym: "vasa recta renis" EXACT [FMA:72006, FMA:TA] synonym: "vasa rectae" RELATED [Wikipedia:Vasa_recta] xref: EMAPA:30043 xref: FMA:72006 xref: galen:ArteriaeRectae xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/21/Kidney_nephron.png/200px-Kidney_nephron.png xref: MA:0002595 is_a: UBERON:0001140 ! renal vein [Term] id: UBERON:0004727 name: cochlear nerve def: "a nerve in the head that carries signals from the cochlea of the inner ear to the brain. It is part of the vestibulocochlear nerve, the 8th cranial nerve which is found in higher vertebrates; the other portion of the 8th cranial nerve is the vestibular nerve which carries spatial orientation information from the semicircular canals. The cochlear nerve is a sensory nerve, one which conducts to the brain information about the environment, in this case acoustic energy impinging on the tympanic membrane. The cochlear nerve arises from within the cochlea and extends to the brainstem, where its fibers make contact with the cochlear nucleus, the next stage of neural processing in the auditory system[WP]." [ISBN:Wikipedia\:Cochlear_nerve] subset: uberon_slim synonym: "auditory nerve" EXACT [FMA:53431] synonym: "cochlear root of acoustic nerve" EXACT [FMA:53431] synonym: "cochlear root of eighth cranial nerve" EXACT [FMA:53431] synonym: "nervus vestibulocochlearis" RELATED [BTO:0003490] synonym: "vestibulocochlear VIII nerve cochlear component" EXACT [MA:0001110] xref: BM:VIIIN xref: BTO:0003490 xref: EHDAA2:0002195 xref: FMA:53431 xref: GAID:723 xref: MA:0001110 xref: MESH:A.08.800.800.120.910.120 xref: ncithesaurus:Cochlear_Nerve xref: OG:0001182 xref: OpenCyc:Mx4rwIhQfZwpEbGdrcN5Y29ycA xref: SCTID:280286001 is_a: UBERON:0001785 ! cranial nerve relationship: branch_of UBERON:0001648 ! vestibulocochlear nerve [Term] id: UBERON:0004728 name: amphibian larval stage def: "Amphibian larvae, sometimes called pollywogs or tadpoles, hatch from eggs and begin to grow limbs and other adult physical features at various times, depending on the species, before they metamorphose into the adult form." [GO:0002117] synonym: "polliwog" NARROW SENSU [Wikipedia:Larva] synonym: "polliwog stage" NARROW SENSU [Wikipedia:Larva] synonym: "tadpole" NARROW SENSU [Wikipedia:Larva] synonym: "tadpole stage" NARROW SENSU [Wikipedia:Larva] xref: XAO:1000008 is_a: UBERON:0000069 ! larval stage [Term] id: UBERON:0004729 name: nematode larval stage def: "Nematode larval development begins with the newly hatched first-stage larva (L1) and ends with the end of the last larval stage (for example the fourth larval stage (L4) in C. elegans). Each stage of nematode larval development is characterized by proliferation of specific cell lineages and an increase in body size without alteration of the basic body plan. Nematode larval stages are separated by molts in which each stage-specific exoskeleton, or cuticle, is shed and replaced anew." [GO:0002119] xref: WBls:0000023 is_a: UBERON:0000069 ! larval stage [Term] id: UBERON:0004730 name: instar larval stage def: "This begins with the newly hatched first-instar larva, through its maturation to the end of the last larval stage. An example of this process is found in Drosophila melanogaster." [GO:0002168] xref: FBdv:00005336 is_a: UBERON:0000069 ! larval stage [Term] id: UBERON:0004731 name: neuromere def: "A segment of the developing neural tube[MP]. A metameric segment of the central nervous system[ZFA]. morphologically or molecularly defined transient segments of the early developing brain. Rhombomeres are such segments that make up the rhombencephalon or hindbrain. [WP]." [MP:0003208, Wikipedia:Neuromere] comment: WP says: "More controversially, some argue that there exist early developmental segments that give rise to structures of the midbrain (mesomeres) and forebrain (prosomeres).". Note that ZFA has spinal neuromere synonym: "neural segment" EXACT [] synonym: "neural tube segment" EXACT [] synonym: "neuromere" EXACT [] xref: TAO:0001328 xref: ZFA:0001328 is_a: UBERON:0002050 ! implied link automatically realized ! embryonic structure is_a: UBERON:0004732 ! implied link automatically realized ! segmental subdivision of nervous system relationship: part_of UBERON:0001049 intersection_of: UBERON:0004732 ! segmental subdivision of nervous system intersection_of: part_of UBERON:0001049 ! neural tube created_by: Melissa Haendel creation_date: 2009-06-18T09:00:04Z [Term] id: UBERON:0004732 name: segmental subdivision of nervous system def: "An organ segment that is part of a nervous system [Obol]." [OBOL:automatic] synonym: "neuromere" RELATED [FBbt:00005140] xref: FBbt:00005140 is_a: UBERON:0000063 ! implied link automatically realized ! organ segment is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system relationship: part_of UBERON:0001016 intersection_of: UBERON:0000063 ! organ segment intersection_of: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0004733 name: segmental subdivision of hindbrain def: "An organ segment that is part of a hindbrain [Obol]." [OBOL:automatic] synonym: "hindbrain segment" EXACT [FMA:61998] synonym: "segment of hindbrain" EXACT [FMA:61998] xref: FMA:61998 is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain is_a: UBERON:0004732 ! implied link automatically realized ! segmental subdivision of nervous system relationship: part_of UBERON:0002028 intersection_of: UBERON:0000063 ! organ segment intersection_of: part_of UBERON:0002028 ! hindbrain [Term] id: UBERON:0004734 name: gastrula alt_id: UBERON:0007012 def: "Organism at the gastrula stage." [Wikipedia:Gastrula] synonym: "gastrula embryo" EXACT [BILA:0000060] xref: BILA:0000060 xref: BTO:0001403 xref: GAID:1302 xref: MESH:A.16.254.412 xref: MIAA:0000179 xref: ncithesaurus:Gastrula is_a: UBERON:0000922 ! embryo relationship: existence_starts_and_ends_during UBERON:0000109 intersection_of: UBERON:0000468 ! multi-cellular organism intersection_of: existence_starts_and_ends_during UBERON:0000109 ! gastrula stage [Term] id: UBERON:0004735 name: archenteron def: "The cavity of a gastrula forming a primitive gut[BTO]. The primitive gut that forms during gastrulation in the developing blastula. It develops into the digestive tract of an animal. As primary mesenchyme cells detach from the vegetal pole in the blastula and enter the fluid filled cavity in the center (the blastocoel), the remaining cells at the vegetal pole flatten to form a vegetal plate. This buckles inwards towards the blastocoel in a process called invagination. The cells continue to be rearranged until the shallow dip formed by invagination transforms into a deeper, narrower pouch formed by the gastrula's endoderm. This narrowing and lengthening of the archenteron is driven by convergent extension. The open end of the archenteron is called the blastopore. The filopodia--thin fibers formed by the mesenchyme cells--found in a late gastrula contract to drag the tip of the archenteron across the blastocoel. The endoderm of the archenteron will fuse with the ectoderm of the blastocoel wall. At this point gastrulation is complete, and the gastrula has a functional digestive tube. The indentation that is actually formed is called the lip of the blastopore in amphibians and fish, and the primitive streak in birds and mammals. Each is controlled by the dorsal blastopore, and primitive node (also known as Hensen's node), respectively." [Wikipedia:Archenteron] synonym: "gastrocoel" RELATED [XAO:0000092] synonym: "mesenteron" RELATED [UBERON:cjm] xref: AAO:0010430 xref: BTO:0001696 xref: XAO:0000092 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: part_of UBERON:0004734 ! gastrula relationship: part_of UBERON:0007026 ! primitive gut [Term] id: UBERON:0004736 name: metanephric glomerulus def: "glomerulus of the mature vertebrate kidney, or metanephros." [GO:0072224] synonym: "glomerulus of metanephros" EXACT [] xref: OG:0001242 is_a: UBERON:0000074 ! implied link automatically realized ! renal glomerulus relationship: part_of UBERON:0000081 intersection_of: UBERON:0000074 ! renal glomerulus intersection_of: part_of UBERON:0000081 ! metanephros [Term] id: UBERON:0004737 name: metanephric collecting duct def: "A collecting duct of renal tubule that is part of a metanephros [Obol]." [OBOL:automatic] synonym: "collecting duct of metanephros" EXACT [] xref: OG:0000983 is_a: UBERON:0001232 ! implied link automatically realized ! collecting duct of renal tubule relationship: part_of UBERON:0000081 intersection_of: UBERON:0001232 ! collecting duct of renal tubule intersection_of: part_of UBERON:0000081 ! metanephros [Term] id: UBERON:0004738 name: metanephric juxtaglomerular apparatus def: "juxtaglomerular apparatus of the mature vertebrate kidney, or metanephros." [GO:0072206] synonym: "juxtaglomerular apparatus of metanephros" EXACT [] is_a: UBERON:0002303 ! implied link automatically realized ! juxtaglomerular apparatus is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0000081 intersection_of: UBERON:0002303 ! juxtaglomerular apparatus intersection_of: part_of UBERON:0000081 ! metanephros [Term] id: UBERON:0004739 name: pronephric glomerulus alt_id: UBERON:0004191 def: "The glomus forms from the splanchnic intermediate mesoderm and is the vascularized filtration unit, filtering the blood before it enters the tubules. The glomus is external to the nephron and extends over more than one body segment" [GO:0072013] comment: a glomus differs from a glomerulus in that each vascular glomus services several tubules. ISBN10:0073040584 "Vertebrates, Kardong" synonym: "glomerulus of pronephros" EXACT [] synonym: "glomus" EXACT [XAO:0000318] xref: AAO:0011049 xref: OG:0001237 xref: SCTID:360548001 xref: XAO:0000318 xref: ZFA:0001557 is_a: UBERON:0000074 ! implied link automatically realized ! renal glomerulus relationship: part_of UBERON:0002120 intersection_of: UBERON:0000074 ! renal glomerulus intersection_of: part_of UBERON:0002120 ! pronephros relationship: develops_from UBERON:0007128 ! glomeral mesenchyme [Term] id: UBERON:0004740 name: basibranchial def: "Median elements that are ossified within copulae and are not assigned to a specific branchial arch number. They articulate posterolaterally with the hypobranchials." [ZFA:0000170] synonym: "basibranchials" EXACT [ZFA:0000170] synonym: "copula I" RELATED [AAO:0000686] xref: AAO:0000686 xref: EFO:0003503 xref: ZFA:0000170 is_a: UBERON:0002513 ! endochondral bone [Term] id: UBERON:0004741 name: cleithrum def: "Transversely oriented bone connecting the occipital region of the skull dorsally and pectoral girdle ventrally; appears near the end of embryogenesis." [ZFA:0000184] synonym: "cleithra" EXACT [ZFA:0000184] xref: AAO:0000750 xref: EFO:0003507 xref: ZFA:0000184 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0007829 ! implied link automatically realized ! pectoral girdle bone relationship: part_of UBERON:0001421 ! pectoral girdle [Term] id: UBERON:0004742 name: dentary def: "Dermal bone that forms the antero-lateral part of the lower jaw. It first appears around the anterior end of Meckel's cartilage (5.1 mm NL). In the adult, the dentary meets its counterpart anteriorly at the mandibular symphysis. The dentary abuts the retroarticular posteriorly, and it surround the anguloarticular. The dentary is connected to the maxilla by the maxillo-mandibular ligament. Dentary teeth are absent in cypriniforms, but are present in other ostariophysans." [Wikipedia:Dentary#In_other_vertebrates, ZFA:0000191] synonym: "dentale" RELATED [AAO:0000124] synonym: "dentary bone" EXACT [ZFA:0000191] synonym: "os dentale" RELATED [AAO:0000124] synonym: "sur-angulaire" RELATED [AAO:0000124] xref: AAO:0000124 xref: EFO:0003508 xref: ncithesaurus:Dental xref: OG:0001022 xref: ZFA:0000191 is_a: UBERON:0002514 ! intramembranous bone is_a: UBERON:0004766 ! implied link automatically realized ! cranial bone is_a: UBERON:0004768 ! implied link automatically realized ! bone of lower jaw relationship: part_of UBERON:0001710 ! lower jaw relationship: part_of UBERON:0003113 ! dermatocranium [Term] id: UBERON:0004743 name: coracoid def: "Endochondral bone of the pectoral girdle that develops from the scapulocoracoid cartilage and occupies the ventral part of the pectoral girdle. The coracoid is a paired bone that articulates approximately dorsally with the cleithrum, scapula and mesocoracoid[ZFA]. A coracoid is a paired bone which is part of the shoulder assembly in all vertebrates except therian mammals (therians = marsupials and placentals). In therian mammals (including humans), a coracoid process is present as part of the scapula, but this is not homologous with the coracoid bone of most other animals. In other tetrapods it joins the scapula to the front end of the sternum and has a notch on the dorsal surface which, along with a similar notch on the ventral surface of the scapula, forms the socket in which the proximal end of the humerus (upper arm bone) is located. The acrocoracoid process is an expansion adjacent to this contact surface, to which the shoulderward end of the biceps brachii muscle attaches in these animals. In birds (and generally theropods and related animals), the entire unit is rigid and called scapulocoracoid. This plays a major role in bird flight. In fish it provides the base for the pectoral fin. Monotremes, as well as the extinct therapsids, possess both the coracoid bone of reptiles (here referred to as the procoracoid, or anterior coracoid), and the coracoid process of other mammals, with the latter being present as a separate bone[WP]." [Wikipedia:Coracoid, ZFA:0000332] synonym: "clavicula" RELATED [AAO:0000764] synonym: "clavicula posterior" RELATED [AAO:0000764] synonym: "clavicula vera" RELATED [AAO:0000764] synonym: "coracoideum" RELATED [AAO:0000764] synonym: "coracoidien" RELATED [AAO:0000764] synonym: "coracoids" EXACT [ZFA:0000332] synonym: "pars sternalis scapulae" RELATED [AAO:0000764] synonym: "scapulocoracoid" RELATED [ZFA:0000332] xref: AAO:0000764 xref: ZFA:0000332 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0007829 ! implied link automatically realized ! pectoral girdle bone relationship: develops_from UBERON:0004753 ! scapulocoracoid relationship: part_of UBERON:0001421 ! pectoral girdle [Term] id: UBERON:0004744 name: anguloarticular def: "The anguloarticular is a compound bone that results of the fusion of the dermal angular and the cartilaginous articular and forms the posterior part of the lower jaw. The dermal part ossifies initially on the posterolateral surface of Meckel's cartilage near the articulation with the quadrate (5.5 mm NL). A posterior process forms, creating a synovial joint with the quadrate[ZFA]. Endochondral ossification of the posterior articular part of Meckel's cartilage." [AAO:0000028, ZFA:0000467] synonym: "angulaire" RELATED [AAO:0000028] synonym: "angulare" RELATED [AAO:0000028] synonym: "articular" EXACT [ZFA:0000467] synonym: "dermarticulare" RELATED [AAO:0000028] synonym: "goniale" RELATED [AAO:0000028] synonym: "operculo angulaire" RELATED [AAO:0000028] xref: AAO:0000028 xref: EFO:0003530 xref: ZFA:0000467 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004766 ! implied link automatically realized ! cranial bone is_a: UBERON:0004768 ! implied link automatically realized ! bone of lower jaw relationship: develops_from UBERON:0001086 ! articular cartilage relationship: homologous_to UBERON:0001689 ! malleus relationship: part_of UBERON:0001710 ! lower jaw relationship: part_of UBERON:0003113 ! dermatocranium [Term] id: UBERON:0004745 name: parasphenoid def: "Long, unpaired median dermal bone that runs almost the entire length of the cranium. Contacts the prevomer anteriorly, and the prootic and basioccipital posteriorly. Anteriorly the parasphenoid is a long, thin bone that widens abruptly at the point of contact with the prootic." [ZFA:0000561] synonym: "keilbein" RELATED [AAO:0000385] synonym: "os parasphenoidale" RELATED [AAO:0000385] synonym: "os sphenoideum" RELATED [AAO:0000385] synonym: "parabasale" RELATED [AAO:0000385] xref: AAO:0000385 xref: ZFA:0000561 is_a: UBERON:0002514 ! intramembranous bone is_a: UBERON:0003465 ! implied link automatically realized ! chondrocranium bone relationship: part_of UBERON:0001697 ! orbit relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0003111 ! sphenoid region relationship: part_of UBERON:0003112 ! olfactory region relationship: part_of UBERON:0003113 ! dermatocranium [Term] id: UBERON:0004746 name: prootic def: "Paired cartilage bone that contacts the pterosphenoid anteriorly, the sphenotic and the pterotic dorsally, and the epiotic and basioccipital posteriorly. The parasphenoid covers the ventral region of each prootic, the upper edge of which contributes to the hyomandibular facet. Bear foramina that accommodate branches of the trigeminal and facial nerves." [ZFA:0000575] synonym: "prootics" EXACT [ZFA:0000575] xref: AAO:0000514 xref: EFO:0003542 xref: ZFA:0000575 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0003465 ! implied link automatically realized ! chondrocranium bone relationship: develops_from UBERON:0004637 ! otic capsule relationship: develops_from UBERON:0005410 ! cartilaginous otic capsule relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0002241 ! chondrocranium relationship: part_of UBERON:0003110 ! otic region [Term] id: UBERON:0004747 name: supraoccipital alt_id: UBERON:0005237 def: "Large shield-shaped unpaired median cartilage bone that contact the parietal anteriorly, and the exocciptial and epiotic laterally. Forms the posterodorsal most point of the cranium. The supraoccipital usually bears a crest that extends posterodorsally." [ZFA:0000595] subset: vertebrate_core synonym: "supraoccipital bone" EXACT [MA:0001474] xref: AAO:0000588 xref: MA:0001474 xref: OG:0001150 xref: SCTID:95947006 xref: ZFA:0000595 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0003465 ! implied link automatically realized ! chondrocranium bone relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0002241 ! chondrocranium [Term] id: UBERON:0004748 name: autopalatine def: "The cartilaginous autopalatine forms from the anterior palatoquadrate arch. The first sign of ossification is visible at the anterior tip where it articulates with the maxilla (7.6 mm). In adults there are three processes at the anterior portion of the palatine: a ventromedial process, which forms the socket of the small ball- and- socket joint with the preethmoid; a dorsomedial process, which is connected by a short ligament to the ethmoid; and a lateral process, which extends toward the first infraorbital. Possession of a dorsomedial process, which abuts the ethmoid, is a unique feature shared by Cypriniformes (Fink and Fink, 1981). The palatine has two components, the autopalatine (derived from pars autopalatine) and the dermal component having teeth, the dermopalatine Arratia & Schultze 1990. The element in cypriniforms is only the cartilage part, so that it is more correct to name it autopalatine and not as palatine in general that it implies a fusion of elements (as in perciforms)." [ZFA:0000620] synonym: "neopalatine" BROAD [AAO:0000372] synonym: "palatine" EXACT [ZFA:0000620] xref: AAO:0000372 xref: ZFA:0000620 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0003462 ! implied link automatically realized ! viscerocranium bone relationship: develops_from UBERON:0004752 ! palatoquadrate cartilage relationship: part_of UBERON:0001709 ! upper jaw [Term] id: UBERON:0004749 name: blastodisc def: "a small, circular, white spot (approximately 2-3 mm across) on the surface of the yellow yolk of an egg that has been laid. The nucleus of the egg is in the germinal disc." [Wikipedia:Germinal_disc] synonym: "germinal disc" EXACT [Wikipedia:Germinal_disc] xref: AAO:0000043 xref: BTO:0000494 xref: BTO:0001504 xref: ZFA:0001175 is_a: UBERON:0002050 ! embryonic structure [Term] id: UBERON:0004750 name: blastoderm def: "A layer of cells formed at one pole of macrolecithal eggs such as the yolky egg of birds. The yolk prevents the division from taking place through the egg, resulting in meroblastic cleavage during the many cleavage divisions. At the animal pole (containing less yolk than the vegetal pole), the zygote divides and subdivides, forming the blastoderm, which gradually spreads around the yolk and forms the embryo. The blastoderm is composed of two layers, the epiblast and the hypoblast, which enclose the fluid-filled blastocoel cavity." [Wikipedia:Blastoderm] xref: AAO:0000042 xref: BTO:0000126 xref: MESH:A.16.254.085.067 xref: ZFA:0001176 is_a: UBERON:0002050 ! embryonic structure relationship: develops_from UBERON:0004749 ! blastodisc relationship: has_part UBERON:0000089 ! hypoblast relationship: has_part UBERON:0002532 ! epiblast [Term] id: UBERON:0004751 name: hypohyal bone def: "Hypohyals are the most anterior of the bilaterally paired ventral hyoid arch elements. The two hypohyals in zebrafish ossify at the anterodorsal and anteroventral tips of the ceratohyal cartilages; no separate hypohyal cartilages are present." [ZFA:0001381] xref: AAO:0000958 xref: ZFA:0001381 is_a: UBERON:0002513 ! endochondral bone [Term] id: UBERON:0004752 name: palatoquadrate cartilage synonym: "dorsal mandibular cartilage" EXACT [ZFA:0001399] synonym: "pterygoquadrate" EXACT [ZFA:0001399] synonym: "quadrate cartilage" EXACT [ZFA:0001399] xref: AAO:0000524 xref: ZFA:0001399 is_a: UBERON:0003933 ! cranial cartilage is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001709 ! upper jaw relationship: part_of UBERON:0003108 ! suspensorium [Term] id: UBERON:0004753 name: scapulocoracoid def: "The cartilage from which both the scapula and coracoid develop." [ZFA:0001455] synonym: "coraco-scapular cartilage" EXACT [ZFA:0001455] xref: AAO:0000781 xref: ZFA:0001455 is_a: UBERON:0002418 ! cartilage tissue is_a: UBERON:0007390 ! implied link automatically realized ! fore limb/fin cartilage relationship: part_of UBERON:0001421 ! pectoral girdle [Term] id: UBERON:0004754 name: foramen ovale of heart def: "In the fetal heart, the foramen ovale (also ostium secundum of Born or falx septi) allows blood to enter the left atrium from the right atrium. It is one of two fetal cardiac shunts, the other being the ductus arteriosus (which allows blood that still escapes to the right ventricle to bypass the pulmonary circulation). Another similar adaptation in the fetus is the ductus venosus. In most individuals, the foramen ovale (pronounced /fɒˈreɪmən oʊˈvɑːli/) closes at birth. It later forms the fossa ovalis[WP]." [Wikipedia:Foramen_ovale_(heart)] synonym: "Bottalo's foramen" EXACT [FMA:86043] synonym: "falx septi" EXACT [Wikipedia:Foramen_ovale_(heart)] synonym: "foramen ovale" NARROW [galen:ForamenOvale, MA:0001873] synonym: "foramen ovale cordis" EXACT [galen:ForamenOvaleCordis] synonym: "ostium secundum of Born" EXACT [Wikipedia:Foramen_ovale_(heart)] xref: EHDAA2:0004142 xref: EMAPA:18244 xref: FMA:86043 xref: galen:ForamenOvale xref: galen:ForamenOvaleCordis xref: MA:0001873 xref: ncithesaurus:Oval_Foramen xref: SCTID:362015004 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0002085 ! interatrial septum [Term] id: UBERON:0004755 name: skeletal tissue comment: Four classes of mineralized tissues are found in vertebrates: bone, cartilage, dentine, and enamel. We think of cartilage and bone as skeletal tissues and of enamel and dentine as dental tissues, but enamel and dentine arose evolutionarily together with bone as skeletal tissues in the dermal skeleton (exoskeleton) of early vertebrates. Scales and teeth of sharks are examples of dermal skeletal elements that are still composed of the three ancient components-enamel, dentine, and bone. Cartilage, on the other hand, provided the basis for the second vertebrate skeletal system, the endoskeleton (Smith and Hall, 1990; Hall, 1998a,b). some invertebrate skeletal tissues have surprisingly bone-like features. Examples include chondrocytes interconnected by cell processes in cephalopod cartilages (Cole and Hall, 2004a,b), and the calcium phosphate layer in the shells of brachiopods (Rodland et al., 2003). However, neither bone nor mineralized cartilage have been found in invertebrates synonym: "mineralized tissue" NARROW [] xref: SCTID:309311006 xref: VAO:0000015 xref: XAO:0004038 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure disjoint_from: UBERON:0003714 ! neural tissue relationship: part_of UBERON:0004765 ! skeletal element [Term] id: UBERON:0004756 name: dermal skeletal element def: "dermis-derived entity that is made of skeletal tissue." [] synonym: "dermal element" EXACT [VAO:curator] is_a: UBERON:0004765 ! implied link automatically realized ! skeletal element relationship: develops_from UBERON:0002067 relationship: has_part UBERON:0004755 intersection_of: UBERON:0004765 ! skeletal element intersection_of: develops_from UBERON:0002067 ! dermis intersection_of: has_part UBERON:0004755 ! skeletal tissue [Term] id: UBERON:0004757 name: rectal gland def: "An evagination of the terminal portion of the intestine of Elasmobranchii. Function formerly thought to be related to digestion or excretion, but now considered to secrete high concentrations of excess sodium chloride. Found also in the coelacanth Latimeria chalumnae[BTO]." [BTO:0001157] comment: does not include FMA:15724 Rectal gland // epithelial tissue gland - concentrates & secretes excess Na & Cl in sharks. large shark liver produces copious amounts of urea, making the shark hyperosmotic to seawater, & thus a shark acts like a fresh water fish, constantly gaining water. Excess salts are concentrated by the rectal gland and secreted subset: organ_slim xref: BTO:0001157 xref: SCTID:80455007 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002530 ! gland is_a: UBERON:0003408 ! implied link automatically realized ! gland of gut is_a: UBERON:0004758 ! implied link automatically realized ! salt gland relationship: part_of UBERON:0001052 ! rectum [Term] id: UBERON:0004758 name: salt gland def: "an organ for excreting excess salts. It is found in elasmobranchs, seabirds, and some reptiles. In sharks, salt glands are found in the rectum, but in birds and reptiles, they are found in or on the skull, in the area of the eyes, nostrils or mouth. In crocodiles, the salt is excreted through the tongue. Such glands work by active transport via sodium-potassium pump that moves salt from the blood into the gland, where it can be excreted as a concentrated solution. Salt glands function to keep salt balance, and allow marine vertebrates to drink seawater[WP]." [Wikipedia:Salt_gland] subset: functional_classification subset: organ_slim xref: BTO:0001204 xref: GAID:1235 xref: MESH:A.13.811 is_a: UBERON:0002530 ! implied link automatically realized ! gland [Term] id: UBERON:0004759 name: salt gland of cranial region def: "A salt gland located in the cranium or cranial region." [OBOL:automatic] subset: organ_slim is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004758 ! implied link automatically realized ! salt gland [Term] id: UBERON:0004760 name: gland of anal canal def: "A gland that is part of an anal canal [Obol]." [OBOL:automatic] subset: organ_slim synonym: "anal gland" RELATED [] synonym: "gland of anal canal" EXACT [OBOL:automatic] synonym: "gland of anus" RELATED [] synonym: "rectal gland" RELATED [] xref: EMAPA:27221 xref: EMAPA:27233 xref: EMAPA:27543 xref: FMA:15720 xref: FMA:15724 xref: ncithesaurus:Anal_Gland is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003408 ! implied link automatically realized ! gland of gut relationship: part_of UBERON:0000159 intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0000159 ! anal canal [Term] id: UBERON:0004761 name: cartilaginous neurocranium def: "the primitive cartilagionous skeletal structure of the fetal skull that grows to envelop the rapidly growing embyonic brain. In humans, the chondrocranium begins forming at 28 days from mesenchymal condensations and is fully formed between week 7 and 9 of fetal development. While the majority of the chondrocranium is succeeded by the bony skull in most higher vertebrates, some components do persist into adulthood.[1] In Cartilagious fishes and Agnathans, the chondrocranium persist throughout life.[2] Embryologically, the chondrocranium represent the basal cranial structure, and lay the base for the formation of the endocranium in higher vertebrates[WP]." [Wikipedia:Chondrocranium] comment: note that in contrast to chondrocranium, this structure is entirely cartiliginous. In Chondricthyes this is the same as the neurocranium. FMA:76621 is an undefined fetal structure, so we assume the correct placement is here. Note that this is distinct from MA:0000317 which is the uberon:neurocranium (the part of the cranium that encloses the brain) synonym: "cartilaginous chondocranium" EXACT [] synonym: "cartilaginous skull" RELATED [] synonym: "cartiligionous skeletal structure of skull" EXACT [] synonym: "chondocranium" RELATED [Wikipedia:Chondrocranium] synonym: "neurocranium" RELATED SENSU [] xref: AAO:0000094 xref: AAO:0010153 xref: EHDAA:6031 xref: FMA:76621 xref: ncithesaurus:Chondrocranium xref: SCTID:155540009 xref: XAO:0003059 is_a: UBERON:0004765 ! skeletal element relationship: develops_from UBERON:0009617 {source="PMC1571569"} ! head paraxial mesenchyme relationship: has_part UBERON:0002418 ! cartilage tissue [Term] id: UBERON:0004763 name: endochondral bone tissue def: "Replacement bone tissue that forms within cartilage[TAO]. Endochondral ossification is the formation of bone by the replacement of cartilage tissue with mineralized bone[GO]. cartilage is present during endochondral ossification. It is also an essential process during the rudimentary formation of long bones, the growth of the length of long bones, and the natural healing of bone fractures[WP]." [GO:0001958, Wikipedia:Endochondral_bone] comment: note the distinction between endochondral bone and endochondral bone tissue. Some bones may be a mixture of both tissue types. The MA class most likely refers to a tissue type subset: uberon_slim subset: vertebrate_core synonym: "replacement bone" BROAD [ZFA:0001628] xref: AAO:0010768 xref: MA:0002836 xref: ZFA:0001628 is_a: UBERON:0002481 ! implied link automatically realized ! bone tissue disjoint_from: UBERON:0004764 ! intramembranous bone tissue relationship: part_of UBERON:0002513 ! endochondral bone relationship: replaces UBERON:0002418 ! cartilage tissue [Term] id: UBERON:0004764 name: intramembranous bone tissue def: "Bone tissue that forms directly within mesenchyme, and does not replace other tissues[TAO]. Intramembranous ossification is the formation of bone in which osteoblasts secrete a collagen-proteoglycan matrix that binds calcium salts and becomes calcified[GO]. Intramembranous ossification is the way flat bones and the shell of a turtle are formed[GO]. Unlike endochondral ossification, cartilage is not present during intramembranous ossification[WP]." [GO:0001957, Wikipedia:Intramembranous_ossification] comment: note the distinction between intramembranous bone and intramembranous bone tissue. Some bones may be a mixture of both tissue types. The MA class most likely refers to a tissue type. xref: MA:0002837 is_a: UBERON:0002481 ! implied link automatically realized ! bone tissue relationship: develops_from UBERON:0003104 ! mesenchyme relationship: part_of UBERON:0002514 ! intramembranous bone [Term] id: UBERON:0004765 name: skeletal element def: "Organ consisting of skeletal tissue. Encompasses whole bones, fused bones, cartilaginious elements, teeth, dermal denticles." [UBERON:cjm] comment: TODO - add more general class for other kinds of mineralized tissue subset: organ_slim subset: uberon_slim xref: galen:SkeletalStructure xref: TAO:0001890 xref: VAO:0000128 xref: XAO:0004012 xref: ZFA:0005494 is_a: UBERON:0000062 ! organ is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001434 {source="VAO"} ! skeletal system [Term] id: UBERON:0004766 name: cranial bone def: "A bone that is part of a cranium." [UBERON:automatic] synonym: "cranium bone" EXACT [UBERON:automatic] xref: SCTID:181792001 is_a: UBERON:0000032 ! implied link automatically realized ! cranial structure is_a: UBERON:0003457 ! implied link automatically realized ! head bone relationship: part_of UBERON:0003128 intersection_of: UBERON:0001474 ! bone intersection_of: part_of UBERON:0003128 ! cranium [Term] id: UBERON:0004767 name: vomerine tooth def: "A tooth that is on the vomer." [http://www.encyclo.co.uk/define/Vomerine%20teeth] xref: AAO:0000635 xref: TAO:0001631 is_a: UBERON:0001091 ! calcareous tooth [Term] id: UBERON:0004768 name: bone of lower jaw def: "Any bone that is part of the lower jaw." [OBOL:automatic] comment: this is a grouping class which will group analagous structures such as the dentary and the mandible synonym: "bone of ventral mandibular arch" EXACT [OBOL:automatic] synonym: "bone organ of lower jaw" EXACT [OBOL:automatic] synonym: "bone organ of ventral mandibular arch" EXACT [OBOL:automatic] synonym: "lower jaw bone" EXACT [] synonym: "lower jaw bone organ" EXACT [OBOL:automatic] synonym: "ventral mandibular arch bone" EXACT [OBOL:automatic] synonym: "ventral mandibular arch bone organ" EXACT [OBOL:automatic] is_a: UBERON:0003462 ! implied link automatically realized ! viscerocranium bone relationship: part_of UBERON:0001710 intersection_of: UBERON:0001474 ! bone intersection_of: part_of UBERON:0001710 ! lower jaw [Term] id: UBERON:0004769 name: diaphysis def: "Subdivision of long bone which forms the part of the bone between the two epiphyses; together with other the subdivisions of long bone, it constitutes the long bone. Examples: diaphysis of humerus, diaphysis of femur[FMA]. the main or mid section (shaft) of a long bone. It is made up of cortical bone and usually contains bone marrow and adipose tissue (fat)." [Wikipedia:Diaphysis] subset: uberon_slim synonym: "body of long bone" EXACT [] synonym: "long bone diaphysis" EXACT [] synonym: "shaft of long bone" EXACT [] xref: FMA:24013 xref: GAID:189 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/94/Illu_long_bone.jpg/200px-Illu_long_bone.jpg xref: MESH:A.02.835.232.169 xref: SCTID:361729006 is_a: UBERON:0005055 ! zone of long bone [Term] id: UBERON:0004770 name: articular system synonym: "joint system" EXACT [FMA:23878] synonym: "set of all joints" RELATED [] synonym: "set of all joints of body" EXACT [FMA:23878] xref: FMA:23878 xref: MA:0003007 xref: SCTID:361827000 is_a: UBERON:0000480 ! anatomical group is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001434 ! skeletal system [Term] id: UBERON:0004771 name: posterior nasal aperture def: "Opening/conduit between the nasal cavity and the nasopharynx[AAO] The choanae are separated by the vomer[WP]." [AAO:0000093, Wikipedia:Posterior_nasal_apertures] comment: Fish don't have choanae, instead they have two pairs of external nostrils[WP] In addition to tetrapods, the lungfish has internal nostrils too. TODO: check part_of vs adjacent_to nasal cavity. In tetrapods the exhalant nostril (choana) empties into the buccal cavity synonym: "choana" EXACT [Wikipedia:Choane, XAO:0000277] synonym: "internal naris" EXACT [MA:0001323] xref: AAO:0000093 xref: EHDAA:7842 xref: EHDAA2:0000242 xref: FMA:53143 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/87/Gray855.png/200px-Gray855.png xref: MA:0001323 xref: OG:0000545 xref: SCTID:244507001 xref: XAO:0000277 is_a: UBERON:0000003 ! implied link automatically realized ! naris is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0005744 ! implied link automatically realized ! cranial conduit relationship: adjacent_to UBERON:0001728 relationship: part_of UBERON:0001707 intersection_of: UBERON:0000003 ! naris intersection_of: adjacent_to UBERON:0001728 ! nasopharynx intersection_of: part_of UBERON:0001707 ! nasal cavity relationship: part_of UBERON:0003128 ! cranium [Term] id: UBERON:0004772 name: eyelid tarsus def: "The tarsi (tarsal plates) are two comparatively thick, elongated plates of dense connective tissue, about 2.5 cm. in length; one is found in each eyelid, and contributes to its form and support. They directly abut the lid margins." [Wikipedia:Tarsus_(eyelids)] subset: organ_slim synonym: "tarsal plate" EXACT [] synonym: "tarsal plate" EXACT [FMA:59086] synonym: "tarsal plate of eyelid" EXACT [FMA:59086] xref: FMA:59086 xref: MA:0000270 xref: ncithesaurus:Tarsal_Plate xref: SCTID:362529005 is_a: UBERON:0000094 ! membrane organ is_a: UBERON:0002384 ! connective tissue is_a: UBERON:0003581 ! implied link automatically realized ! eyelid connective tissue disjoint_from: UBERON:0004454 ! tarsus relationship: part_of UBERON:0001711 ! eyelid [Term] id: UBERON:0004773 name: superior eyelid tarsus def: "An eyelid tarsus that is part of a upper eyelid [Obol]." [OBOL:automatic] synonym: "superior tarsal plate" EXACT [FMA:59087] synonym: "superior tarsus" EXACT [FMA:59087] synonym: "superior tarsus of eyelid" EXACT [] synonym: "tarsal plate of upper eyelid" EXACT [FMA:59087] synonym: "tarsus of upper eyelid" EXACT [] synonym: "tarsus superior" EXACT [FMA:59087, FMA:TA] xref: FMA:59087 xref: MA:0001260 xref: SCTID:368773004 is_a: UBERON:0004772 ! implied link automatically realized ! eyelid tarsus relationship: part_of UBERON:0001712 intersection_of: UBERON:0004772 ! eyelid tarsus intersection_of: part_of UBERON:0001712 ! upper eyelid [Term] id: UBERON:0004774 name: inferior eyelid tarsus def: "An eyelid tarsus that is part of a lower eyelid [Obol]." [OBOL:automatic] synonym: "inferior tarsal plate" EXACT [FMA:59088] synonym: "inferior tarsus" EXACT [FMA:59088] synonym: "inferior tarsus of eyelid" EXACT [] synonym: "tarsal plate of lower eyelid" EXACT [FMA:59088] synonym: "tarsus inferior" EXACT [FMA:59088, FMA:TA] synonym: "tarsus of lower eyelid" EXACT [] xref: FMA:59088 xref: MA:0001257 xref: SCTID:368774005 is_a: UBERON:0004772 ! implied link automatically realized ! eyelid tarsus relationship: part_of UBERON:0001713 intersection_of: UBERON:0004772 ! eyelid tarsus intersection_of: part_of UBERON:0001713 ! lower eyelid [Term] id: UBERON:0004775 name: outer renal medulla vasa recta def: "A vasa recta that is part of a outer medulla of kidney [Obol]." [OBOL:automatic] synonym: "kidney outer renal medulla vasa recta" EXACT [MP:0011330] synonym: "outer medulla of kidney vasa recta" EXACT [OBOL:automatic] synonym: "outer zone of medulla of kidney vasa recta" EXACT [OBOL:automatic] synonym: "outer zone of renal medulla vasa recta" EXACT [OBOL:automatic] synonym: "vasa recta of outer medulla of kidney" EXACT [OBOL:automatic] synonym: "vasa recta of outer renal medulla" EXACT [OBOL:automatic] synonym: "vasa recta of outer zone of medulla of kidney" EXACT [OBOL:automatic] synonym: "vasa recta of outer zone of renal medulla" EXACT [OBOL:automatic] xref: MA:0002597 is_a: UBERON:0004726 ! implied link automatically realized ! vasa recta relationship: part_of UBERON:0001293 intersection_of: UBERON:0004726 ! vasa recta intersection_of: part_of UBERON:0001293 ! outer medulla of kidney [Term] id: UBERON:0004776 name: inner renal medulla vasa recta def: "A vasa recta that is part of a inner medulla of kidney [Obol]." [OBOL:automatic] synonym: "inner medulla of kidney vasa recta" EXACT [OBOL:automatic] synonym: "inner zone of medulla of kidney vasa recta" EXACT [OBOL:automatic] synonym: "inner zone of renal medulla vasa recta" EXACT [OBOL:automatic] synonym: "set of inner region of renal pyramids vasa recta" EXACT [OBOL:automatic] synonym: "vasa recta of inner medulla of kidney" EXACT [OBOL:automatic] synonym: "vasa recta of inner renal medulla" EXACT [OBOL:automatic] synonym: "vasa recta of inner zone of medulla of kidney" EXACT [OBOL:automatic] synonym: "vasa recta of inner zone of renal medulla" EXACT [OBOL:automatic] synonym: "vasa recta of set of inner region of renal pyramids" EXACT [OBOL:automatic] xref: MA:0002596 is_a: UBERON:0004726 ! implied link automatically realized ! vasa recta relationship: part_of UBERON:0001294 intersection_of: UBERON:0004726 ! vasa recta intersection_of: part_of UBERON:0001294 ! inner medulla of kidney [Term] id: UBERON:0004777 name: respiratory system submucosa def: "A submucosa that is part of a respiratory system [Obol]." [OBOL:automatic] synonym: "apparatus respiratorius submucosa" EXACT [OBOL:automatic] synonym: "submucosa of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "submucosa of respiratory system" EXACT [OBOL:automatic] xref: MA:0001822 is_a: UBERON:0000009 ! implied link automatically realized ! submucosa relationship: part_of UBERON:0001004 intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0001004 ! respiratory system relationship: part_of UBERON:0003570 ! respiratory system connective tissue [Term] id: UBERON:0004778 name: larynx submucosa def: "A submucosa that is part of a larynx [Obol]." [OBOL:automatic] synonym: "submucosa of larynx" EXACT [OBOL:automatic] xref: MA:0002728 xref: SCTID:361941005 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004777 ! implied link automatically realized ! respiratory system submucosa relationship: part_of UBERON:0001737 intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0001737 ! larynx [Term] id: UBERON:0004779 name: respiratory system lamina propria def: "A lamina propria that is part of a respiratory system [Obol]." [OBOL:automatic] synonym: "apparatus respiratorius lamina propria" EXACT [OBOL:automatic] synonym: "apparatus respiratorius lamina propria mucosa" EXACT [OBOL:automatic] synonym: "lamina propria mucosa of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "lamina propria mucosa of respiratory system" EXACT [OBOL:automatic] synonym: "lamina propria of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "lamina propria of respiratory system" EXACT [OBOL:automatic] synonym: "respiratory system lamina propria mucosa" EXACT [OBOL:automatic] xref: MA:0001821 is_a: UBERON:0000030 ! implied link automatically realized ! lamina propria relationship: part_of UBERON:0001004 intersection_of: UBERON:0000030 ! lamina propria intersection_of: part_of UBERON:0001004 ! respiratory system relationship: part_of UBERON:0003570 ! respiratory system connective tissue [Term] id: UBERON:0004780 name: gastrointestinal system lamina propria xref: MA:0001899 xref: ncithesaurus:Gastrointestinal_Tract_Lamina_Propria is_a: UBERON:0000030 ! implied link automatically realized ! lamina propria relationship: part_of UBERON:0005409 intersection_of: UBERON:0000030 ! lamina propria intersection_of: part_of UBERON:0005409 ! gastrointestinal system [Term] id: UBERON:0004781 name: gall bladder lamina propria def: "A lamina propria that is part of a gallbladder [Obol]." [OBOL:automatic] synonym: "biliary lamina propria" RELATED [MA:0001633] synonym: "gall bladder lamina propria mucosa" EXACT [OBOL:automatic] synonym: "gallbladder lamina propria" EXACT [OBOL:automatic] synonym: "gallbladder lamina propria mucosa" EXACT [OBOL:automatic] synonym: "lamina propria mucosa of gall bladder" EXACT [OBOL:automatic] synonym: "lamina propria mucosa of gallbladder" EXACT [OBOL:automatic] synonym: "lamina propria of gall bladder" EXACT [OBOL:automatic] synonym: "lamina propria of gallbladder" EXACT [OBOL:automatic] xref: MA:0001633 xref: ncithesaurus:Gallbladder_Lamina_Propria is_a: UBERON:0000030 ! implied link automatically realized ! lamina propria is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0002110 intersection_of: UBERON:0000030 ! lamina propria intersection_of: part_of UBERON:0002110 ! gallbladder [Term] id: UBERON:0004782 name: gastrointestinal system serosa def: "A serous membrane that is part of a digestive system [Obol]." [OBOL:automatic] synonym: "digestive system serosa" EXACT [OBOL:automatic] synonym: "digestive system serous membrane" EXACT [OBOL:automatic] synonym: "gastrointestinal system serous membrane" EXACT [OBOL:automatic] synonym: "serosa of digestive system" EXACT [OBOL:automatic] synonym: "serosa of gastrointestinal system" EXACT [OBOL:automatic] synonym: "serous membrane of digestive system" EXACT [OBOL:automatic] synonym: "serous membrane of gastrointestinal system" EXACT [OBOL:automatic] xref: MA:0001522 is_a: UBERON:0000042 ! implied link automatically realized ! serous membrane relationship: part_of UBERON:0005409 intersection_of: UBERON:0000042 ! serous membrane intersection_of: part_of UBERON:0005409 ! gastrointestinal system relationship: part_of UBERON:0005409 ! gastrointestinal system [Term] id: UBERON:0004783 name: gall bladder serosa def: "A serous membrane that is part of a gallbladder [Obol]." [OBOL:automatic] synonym: "biliary serosa" RELATED [MA:0001634] synonym: "gall bladder serous membrane" EXACT [OBOL:automatic] synonym: "gallbladder serosa" EXACT [OBOL:automatic] synonym: "gallbladder serous membrane" EXACT [OBOL:automatic] synonym: "serosa of gall bladder" EXACT [OBOL:automatic] synonym: "serosa of gallbladder" EXACT [OBOL:automatic] synonym: "serous coat of gallbladder" EXACT [FMA:14659] synonym: "serous membrane of gall bladder" EXACT [OBOL:automatic] synonym: "serous membrane of gallbladder" EXACT [OBOL:automatic] synonym: "tunica serosa (vesica biliaris)" EXACT [FMA:14659] synonym: "tunica serosa vesicae biliaris" EXACT [FMA:14659, FMA:TA] xref: FMA:14659 xref: MA:0001634 xref: SCTID:362197006 is_a: UBERON:0000042 ! implied link automatically realized ! serous membrane is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0002110 intersection_of: UBERON:0000042 ! serous membrane intersection_of: part_of UBERON:0002110 ! gallbladder [Term] id: UBERON:0004784 name: heart ventricle wall def: "An anatomical wall that is part of a cardiac ventricle [Obol]." [OBOL:automatic] synonym: "anatomical wall of cardiac ventricle" EXACT [OBOL:automatic] synonym: "anatomical wall of heart ventricle" EXACT [OBOL:automatic] synonym: "anatomical wall of lower chamber of heart" EXACT [OBOL:automatic] synonym: "anatomical wall of ventricle of heart" EXACT [OBOL:automatic] synonym: "cardiac ventricle anatomical wall" EXACT [OBOL:automatic] synonym: "cardiac ventricle wall" EXACT [OBOL:automatic] synonym: "heart ventricle anatomical wall" EXACT [OBOL:automatic] synonym: "lower chamber of heart anatomical wall" EXACT [OBOL:automatic] synonym: "lower chamber of heart wall" EXACT [OBOL:automatic] synonym: "ventricle of heart anatomical wall" EXACT [OBOL:automatic] synonym: "ventricle of heart wall" EXACT [OBOL:automatic] synonym: "ventricular wall" EXACT [FMA:13884] synonym: "wall of cardiac ventricle" EXACT [OBOL:automatic] synonym: "wall of heart ventricle" EXACT [OBOL:automatic] synonym: "wall of lower chamber of heart" EXACT [OBOL:automatic] synonym: "wall of ventricle" RELATED [MA:0002791] synonym: "wall of ventricle of heart" EXACT [OBOL:automatic] xref: FMA:13884 xref: MA:0002791 is_a: UBERON:0000060 ! implied link automatically realized ! anatomical wall is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0002082 intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0002082 ! cardiac ventricle [Term] id: UBERON:0004785 name: respiratory system mucosa def: "A mucosa that is part of a respiratory system [Obol]." [OBOL:automatic] comment: TODO - split respiratory tract mucosa from respiratory system mucosa synonym: "apparatus respiratorius mucosa" EXACT [OBOL:automatic] synonym: "apparatus respiratorius mucosa of organ" EXACT [OBOL:automatic] synonym: "apparatus respiratorius mucous membrane" EXACT [OBOL:automatic] synonym: "mucosa of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "mucosa of organ of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "mucosa of organ of respiratory system" EXACT [OBOL:automatic] synonym: "mucosa of respiratory system" EXACT [OBOL:automatic] synonym: "mucous membrane of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "mucous membrane of respiratory system" EXACT [OBOL:automatic] synonym: "respiratory mucosa" RELATED [BTO:0000973] synonym: "respiratory system mucosa of organ" EXACT [OBOL:automatic] synonym: "respiratory system mucous membrane" EXACT [OBOL:automatic] xref: BTO:0000973 xref: EMAPA:18334 xref: GAID:304 xref: MA:0001827 xref: MESH:A.04.760 is_a: UBERON:0000344 ! implied link automatically realized ! mucosa relationship: part_of UBERON:0001004 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0004786 name: gastrointestinal system mucosa comment: The gut mucosa of amphioxus has insulin-secreting cells. PMID:16417468 synonym: "digestive tract mucosa" EXACT [UBERON:cjm] synonym: "gut mucosa" EXACT [BTO:0000546] synonym: "gut mucuous membrane" EXACT [UBERON:cjm] synonym: "mucosa of gut" EXACT [UBERON:cjm] xref: BTO:0000546 xref: MA:0001521 xref: SCTID:410433007 is_a: UBERON:0000344 ! implied link automatically realized ! mucosa is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: part_of UBERON:0005409 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0005409 ! gastrointestinal system relationship: adjacent_to UBERON:0006909 {source="BTO-modified"} ! lumen of gut relationship: part_of UBERON:0001555 ! digestive tract [Term] id: UBERON:0004787 name: urethra urothelium def: "A urothelium that is part of a urethra [Obol]." [OBOL:automatic] synonym: "urethra Uroepithelium" EXACT [OBOL:automatic] synonym: "uroepithelium of urethra" EXACT [OBOL:automatic] synonym: "urothelium of urethra" EXACT [OBOL:automatic] xref: MA:0001687 xref: ncithesaurus:Urethra_Transitional_Cell_Epithelium is_a: UBERON:0000365 ! implied link automatically realized ! urothelium is_a: UBERON:0002325 ! implied link automatically realized ! epithelium of urethra relationship: part_of UBERON:0000057 intersection_of: UBERON:0000365 ! urothelium intersection_of: part_of UBERON:0000057 ! urethra [Term] id: UBERON:0004788 name: kidney pelvis urothelium def: "A urothelium that is part of a renal pelvis [Obol]." [OBOL:automatic] synonym: "kidney pelvis transitional epithelium" EXACT [OBOL:automatic] synonym: "kidney pelvis Uroepithelium" EXACT [OBOL:automatic] synonym: "pelvis of ureter Uroepithelium" EXACT [OBOL:automatic] synonym: "pelvis of ureter urothelium" EXACT [OBOL:automatic] synonym: "renal pelvis transitional epithelium" EXACT [OBOL:automatic] synonym: "renal pelvis Uroepithelium" EXACT [OBOL:automatic] synonym: "renal pelvis urothelium" EXACT [OBOL:automatic] synonym: "transitional epithelium of kidney pelvis" EXACT [OBOL:automatic] synonym: "transitional epithelium of renal pelvis" EXACT [FMA:263264] synonym: "uroepithelium of kidney pelvis" EXACT [OBOL:automatic] synonym: "uroepithelium of pelvis of ureter" EXACT [OBOL:automatic] synonym: "uroepithelium of renal pelvis" EXACT [OBOL:automatic] synonym: "urothelium of kidney pelvis" EXACT [OBOL:automatic] synonym: "urothelium of pelvis of ureter" EXACT [OBOL:automatic] synonym: "urothelium of renal pelvis" EXACT [OBOL:automatic] xref: FMA:263264 xref: MA:0002632 xref: ncithesaurus:Renal_Pelvis_Urothelium is_a: UBERON:0001254 ! implied link automatically realized ! urothelium of ureter is_a: UBERON:0004819 ! implied link automatically realized ! kidney epithelium relationship: part_of UBERON:0001224 intersection_of: UBERON:0000365 ! urothelium intersection_of: part_of UBERON:0001224 ! renal pelvis [Term] id: UBERON:0004789 name: larynx mucous gland def: "A mucous gland that is part of a larynx [Obol]." [OBOL:automatic] synonym: "mucous gland of larynx" EXACT [OBOL:automatic] xref: MA:0001767 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000414 ! implied link automatically realized ! mucous gland relationship: part_of UBERON:0001737 intersection_of: UBERON:0000414 ! mucous gland intersection_of: part_of UBERON:0001737 ! larynx relationship: part_of UBERON:0001824 ! mucosa of larynx [Term] id: UBERON:0004790 name: skin mucous gland def: "A mucous gland that is part of a skin of body [Obol]." [OBOL:automatic] subset: organ_slim synonym: "entire skin mucous gland" EXACT [OBOL:automatic] synonym: "mucous gland of entire skin" EXACT [OBOL:automatic] synonym: "mucous gland of skin of body" EXACT [OBOL:automatic] synonym: "skin of body mucous gland" EXACT [OBOL:automatic] xref: MA:0000148 is_a: UBERON:0000414 ! implied link automatically realized ! mucous gland is_a: UBERON:0002419 ! implied link automatically realized ! skin gland relationship: part_of UBERON:0002097 intersection_of: UBERON:0000414 ! mucous gland intersection_of: part_of UBERON:0002097 ! skin of body [Term] id: UBERON:0004791 name: thymus trabecula def: "A trabecula that is part of a thymus [Obol]." [OBOL:automatic] synonym: "thymic trabecula" EXACT [OBOL:automatic] synonym: "thymus gland trabecula" EXACT [OBOL:automatic] synonym: "trabecula of thymus" EXACT [OBOL:automatic] synonym: "trabecula of thymus gland" EXACT [OBOL:automatic] xref: MA:0002674 xref: ncithesaurus:Thymic_Trabecula is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0000440 ! implied link automatically realized ! trabecula relationship: part_of UBERON:0002370 intersection_of: UBERON:0000440 ! trabecula intersection_of: part_of UBERON:0002370 ! thymus relationship: part_of UBERON:0002370 {source="MA"} ! thymus [Term] id: UBERON:0004792 name: secretion of endocrine pancreas def: "A secretion that is part of a endocrine pancreas [Obol]." [OBOL:automatic] synonym: "endocrine pancreas secretion" EXACT [OBOL:automatic] synonym: "pancreatic endocrine secretion" EXACT [ncithesaurus:Pancreatic_Endocrine_Secretion] synonym: "pars endocrina pancreatis secretion" EXACT [OBOL:automatic] synonym: "secretion of pars endocrina pancreatis" EXACT [OBOL:automatic] xref: MA:0002517 xref: ncithesaurus:Pancreatic_Endocrine_Secretion is_a: UBERON:0004795 ! implied link automatically realized ! pancreas secretion relationship: part_of UBERON:0000016 intersection_of: UBERON:0000456 ! secretion intersection_of: part_of UBERON:0000016 ! endocrine pancreas [Term] id: UBERON:0004793 name: secretion of exocrine pancreas def: "A secretion that is part of a exocrine pancreas [Obol]." [OBOL:automatic] synonym: "exocrine pancreas secretion" EXACT [OBOL:automatic] synonym: "pancreatic exocrine secretion" EXACT [ncithesaurus:Pancreatic_Exocrine_Secretion] synonym: "pars exocrina pancreatis secretion" EXACT [OBOL:automatic] synonym: "secretion of pars exocrina pancreatis" EXACT [OBOL:automatic] xref: MA:0002518 xref: ncithesaurus:Pancreatic_Exocrine_Secretion is_a: UBERON:0004795 ! implied link automatically realized ! pancreas secretion relationship: part_of UBERON:0000017 intersection_of: UBERON:0000456 ! secretion intersection_of: part_of UBERON:0000017 ! exocrine pancreas [Term] id: UBERON:0004794 name: esophagus secretion def: "A secretion that is part of a esophagus [Obol]." [OBOL:automatic] synonym: "gullet secretion" EXACT [OBOL:automatic] synonym: "oesophagus secretion" EXACT [OBOL:automatic] synonym: "secretion of esophagus" EXACT [OBOL:automatic] synonym: "secretion of gullet" EXACT [OBOL:automatic] synonym: "secretion of oesophagus" EXACT [OBOL:automatic] xref: MA:0002514 xref: ncithesaurus:Esophagus_Secretion is_a: UBERON:0000456 ! implied link automatically realized ! secretion relationship: part_of UBERON:0001043 intersection_of: UBERON:0000456 ! secretion intersection_of: part_of UBERON:0001043 ! esophagus [Term] id: UBERON:0004795 name: pancreas secretion def: "A secretion that is part of a pancreas [Obol]." [OBOL:automatic] synonym: "pancreatic secretion" EXACT [OBOL:automatic] synonym: "secretion of pancreas" EXACT [OBOL:automatic] xref: MA:0002516 xref: ncithesaurus:Pancreatic_Secretion is_a: UBERON:0000456 ! implied link automatically realized ! secretion relationship: part_of UBERON:0001264 intersection_of: UBERON:0000456 ! secretion intersection_of: part_of UBERON:0001264 ! pancreas [Term] id: UBERON:0004796 name: prostate gland secretion def: "A secretion that is part of a prostate gland [Obol]." [OBOL:automatic] synonym: "prostate secretion" EXACT [OBOL:automatic] synonym: "secretion of prostate" EXACT [OBOL:automatic] synonym: "secretion of prostate gland" EXACT [OBOL:automatic] xref: MA:0002525 xref: ncithesaurus:Prostate_Gland_Secretion is_a: UBERON:0000456 ! implied link automatically realized ! secretion relationship: part_of UBERON:0002367 intersection_of: UBERON:0000456 ! secretion intersection_of: part_of UBERON:0002367 ! prostate gland [Term] id: UBERON:0004797 name: blood vessel layer xref: MA:0002854 is_a: UBERON:0000119 ! implied link automatically realized ! cell layer relationship: develops_into UBERON:0001981 intersection_of: UBERON:0000119 ! cell layer intersection_of: develops_into UBERON:0001981 ! blood vessel [Term] id: UBERON:0004798 name: respiratory system basal lamina def: "A basal lamina that is part of a respiratory system [Obol]." [OBOL:automatic] synonym: "apparatus respiratorius basal lamina" EXACT [OBOL:automatic] synonym: "apparatus respiratorius basal lamina of connective tissue" EXACT [OBOL:automatic] synonym: "basal lamina of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "basal lamina of connective tissue of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "basal lamina of connective tissue of respiratory system" EXACT [OBOL:automatic] synonym: "basal lamina of respiratory system" EXACT [OBOL:automatic] synonym: "respiratory system basal lamina of connective tissue" EXACT [OBOL:automatic] xref: MA:0001816 is_a: UBERON:0000482 ! implied link automatically realized ! basal lamina relationship: part_of UBERON:0001004 intersection_of: UBERON:0000482 ! basal lamina intersection_of: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0004799 name: trachea basal lamina def: "A basal lamina that is part of a respiratory airway [Obol]." [OBOL:automatic] synonym: "basal lamina of connective tissue of respiratory airway" EXACT [OBOL:automatic] xref: MA:0001855 xref: ncithesaurus:Trachea_Basal_Lamina is_a: UBERON:0004798 ! implied link automatically realized ! respiratory system basal lamina relationship: part_of UBERON:0001005 intersection_of: UBERON:0000482 ! basal lamina intersection_of: part_of UBERON:0001005 ! respiratory airway [Term] id: UBERON:0004800 name: bronchus basal lamina def: "A basal lamina that is part of a bronchus [Obol]." [OBOL:automatic] synonym: "basal lamina of bronchi" EXACT [OBOL:automatic] synonym: "basal lamina of bronchial trunk" EXACT [OBOL:automatic] synonym: "basal lamina of bronchus" EXACT [OBOL:automatic] synonym: "basal lamina of connective tissue of bronchi" EXACT [OBOL:automatic] synonym: "basal lamina of connective tissue of bronchial trunk" EXACT [OBOL:automatic] synonym: "basal lamina of connective tissue of bronchus" EXACT [OBOL:automatic] synonym: "bronchi basal lamina" EXACT [OBOL:automatic] synonym: "bronchi basal lamina of connective tissue" EXACT [OBOL:automatic] synonym: "bronchial trunk basal lamina" EXACT [OBOL:automatic] synonym: "bronchial trunk basal lamina of connective tissue" EXACT [OBOL:automatic] synonym: "bronchus basal lamina of connective tissue" EXACT [OBOL:automatic] xref: MA:0001833 xref: ncithesaurus:Bronchus_Basal_Lamina is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure is_a: UBERON:0004798 ! implied link automatically realized ! respiratory system basal lamina relationship: part_of UBERON:0002185 intersection_of: UBERON:0000482 ! basal lamina intersection_of: part_of UBERON:0002185 ! bronchus [Term] id: UBERON:0004801 name: cervix epithelium def: "An epithelium that is part of a uterine cervix [Obol]." [OBOL:automatic] synonym: "cervical canal epithelial tissue" EXACT [OBOL:automatic] synonym: "cervical canal epithelium" EXACT [OBOL:automatic] synonym: "cervical canal of uterus epithelial tissue" EXACT [OBOL:automatic] synonym: "cervical canal of uterus epithelium" EXACT [OBOL:automatic] synonym: "cervix epithelial tissue" EXACT [OBOL:automatic] synonym: "cervix of uterus epithelial tissue" EXACT [OBOL:automatic] synonym: "cervix of uterus epithelium" EXACT [OBOL:automatic] synonym: "epithelial tissue of cervical canal" EXACT [OBOL:automatic] synonym: "epithelial tissue of cervical canal of uterus" EXACT [OBOL:automatic] synonym: "epithelial tissue of cervix" EXACT [OBOL:automatic] synonym: "epithelial tissue of cervix of uterus" EXACT [OBOL:automatic] synonym: "epithelial tissue of neck of uterus" EXACT [OBOL:automatic] synonym: "epithelial tissue of uterine cervix" EXACT [OBOL:automatic] synonym: "epithelium of cervical canal" EXACT [OBOL:automatic] synonym: "epithelium of cervical canal of uterus" EXACT [OBOL:automatic] synonym: "epithelium of cervix" EXACT [OBOL:automatic] synonym: "epithelium of cervix of uterus" EXACT [OBOL:automatic] synonym: "epithelium of neck of uterus" EXACT [OBOL:automatic] synonym: "epithelium of uterine cervix" EXACT [OBOL:automatic] synonym: "neck of uterus epithelial tissue" EXACT [OBOL:automatic] synonym: "neck of uterus epithelium" EXACT [OBOL:automatic] synonym: "uterine cervix epithelial tissue" EXACT [OBOL:automatic] synonym: "uterine cervix epithelium" EXACT [OBOL:automatic] xref: BTO:0000241 xref: EFO:0001913 xref: MA:0001724 xref: ncithesaurus:Cervix_Epithelium is_a: UBERON:0006955 ! implied link automatically realized ! uterine epithelium relationship: part_of UBERON:0000002 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000002 ! uterine cervix [Term] id: UBERON:0004802 name: respiratory tract epithelium def: "An epithelium that is part of a respiratory tract [Obol]." [OBOL:automatic] synonym: "airway epithelium" RELATED [BTO:0000419] synonym: "epithelial tissue of respiratory tract" EXACT [OBOL:automatic] synonym: "epithelium of respiratory tract" EXACT [OBOL:automatic] synonym: "respiratory epithelium" RELATED [BTO:0000419] synonym: "respiratory tract epithelial tissue" EXACT [OBOL:automatic] xref: BTO:0000419 xref: MA:0001480 is_a: UBERON:0004807 ! implied link automatically realized ! respiratory system epithelium is_a: UBERON:0005911 ! implied link automatically realized ! endo-epithelium relationship: part_of UBERON:0000065 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000065 ! respiratory tract relationship: part_of UBERON:0000072 ! segment of respiratory tract [Term] id: UBERON:0004803 name: penis epithelium def: "An epithelium that is part of a penis [Obol]." [OBOL:automatic] synonym: "epithelial tissue of penis" EXACT [OBOL:automatic] synonym: "epithelium of penis" EXACT [OBOL:automatic] synonym: "penis epithelial tissue" EXACT [OBOL:automatic] xref: EHDAA2:0004039 xref: MA:0001742 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0000989 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000989 ! penis [Term] id: UBERON:0004804 name: oviduct epithelium def: "An epithelium that is part of a oviduct [Obol]." [OBOL:automatic] comment: in FMA, epithelium of uterine tube is a subclass of ciliated columnar epithelium. MA introduces subtypes: ciliated columnar and cuboidal. We map the FMA type according to its relationships, not its label synonym: "epithelial tissue of oviduct" EXACT [OBOL:automatic] synonym: "epithelium of fallopian tube" EXACT [OBOL:automatic] synonym: "epithelium of oviduct" EXACT [OBOL:automatic] synonym: "epithelium of uterine tube" EXACT [FMA:62016] synonym: "oviduct epithelial tissue" EXACT [OBOL:automatic] xref: BTO:0002402 xref: EMAPA:29043 xref: MA:0001718 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0000993 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000993 ! oviduct relationship: part_of UBERON:0003889 ! fallopian tube [Term] id: UBERON:0004805 name: seminal vesicle epithelium def: "An epithelium that is part of a seminal vesicle [Obol]." [OBOL:automatic] synonym: "epithelial tissue of seminal gland" EXACT [OBOL:automatic] synonym: "epithelial tissue of seminal vesicle" EXACT [OBOL:automatic] synonym: "epithelium of seminal gland" EXACT [OBOL:automatic] synonym: "epithelium of seminal vesicle" EXACT [OBOL:automatic] synonym: "seminal gland epithelial tissue" EXACT [OBOL:automatic] synonym: "seminal gland epithelium" EXACT [OBOL:automatic] synonym: "seminal vesicle epithelial tissue" EXACT [OBOL:automatic] xref: EMAPA:29771 xref: MA:0001745 xref: ncithesaurus:Seminal_Vesicle_Epithelium is_a: UBERON:0004910 ! implied link automatically realized ! epithelium of male gonad relationship: part_of UBERON:0000998 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000998 ! seminal vesicle [Term] id: UBERON:0004806 name: vas deferens epithelium def: "An epithelium that is part of a vas deferens [Obol]." [OBOL:automatic] synonym: "deferent duct epithelial tissue" EXACT [OBOL:automatic] synonym: "deferent duct epithelium" EXACT [OBOL:automatic] synonym: "ductus deferens epithelial tissue" EXACT [OBOL:automatic] synonym: "ductus deferens epithelium" EXACT [OBOL:automatic] synonym: "epithelial tissue of deferent duct" EXACT [OBOL:automatic] synonym: "epithelial tissue of ductus deferens" EXACT [OBOL:automatic] synonym: "epithelial tissue of sperm duct" EXACT [OBOL:automatic] synonym: "epithelial tissue of vas deferen" EXACT [OBOL:automatic] synonym: "epithelial tissue of vas deferens" EXACT [OBOL:automatic] synonym: "epithelium of deferent duct" EXACT [OBOL:automatic] synonym: "epithelium of ductus deferens" EXACT [OBOL:automatic] synonym: "epithelium of sperm duct" EXACT [OBOL:automatic] synonym: "epithelium of vas deferen" EXACT [OBOL:automatic] synonym: "epithelium of vas deferens" EXACT [OBOL:automatic] synonym: "sperm duct epithelial tissue" EXACT [OBOL:automatic] synonym: "sperm duct epithelium" EXACT [OBOL:automatic] synonym: "vas deferen epithelial tissue" EXACT [OBOL:automatic] synonym: "vas deferen epithelium" EXACT [OBOL:automatic] synonym: "vas deferens epithelial tissue" EXACT [OBOL:automatic] xref: EMAPA:29274 xref: FMA:225317 xref: MA:0001749 xref: ncithesaurus:Vas_Deferens_Epithelium is_a: UBERON:0000483 ! implied link automatically realized ! epithelium is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0001000 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001000 ! vas deferens [Term] id: UBERON:0004807 name: respiratory system epithelium def: "An epithelium that is part of a respiratory system [Obol]." [OBOL:automatic] synonym: "apparatus respiratorius epithelial tissue" EXACT [OBOL:automatic] synonym: "apparatus respiratorius epithelium" EXACT [OBOL:automatic] synonym: "epithelial tissue of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "epithelial tissue of respiratory system" EXACT [OBOL:automatic] synonym: "epithelium of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "epithelium of respiratory system" EXACT [OBOL:automatic] synonym: "respiratory system epithelial tissue" EXACT [OBOL:automatic] xref: MA:0001823 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium relationship: part_of UBERON:0001004 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0004808 name: gastrointestinal system epithelium def: "An epithelium that is part of a digestive system [Obol]." [OBOL:automatic] synonym: "digestive system epithelial tissue" EXACT [OBOL:automatic] synonym: "digestive system epithelium" EXACT [OBOL:automatic] synonym: "epithelial tissue of digestive system" EXACT [OBOL:automatic] synonym: "epithelial tissue of gastrointestinal system" EXACT [OBOL:automatic] synonym: "epithelium of digestive system" EXACT [OBOL:automatic] synonym: "epithelium of gastrointestinal system" EXACT [OBOL:automatic] synonym: "gastrointestinal system epithelial tissue" EXACT [OBOL:automatic] xref: MA:0001520 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium relationship: part_of UBERON:0005409 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0005409 ! gastrointestinal system [Term] id: UBERON:0004809 name: salivary gland epithelium def: "An epithelium that is part of a salivary gland [Obol]." [OBOL:automatic] synonym: "epithelial tissue of salivary gland" EXACT [OBOL:automatic] synonym: "epithelium of salivary gland" EXACT [OBOL:automatic] synonym: "salivary gland epithelial tissue" EXACT [OBOL:automatic] xref: BTO:0004421 xref: EMAPA:17753 xref: EMAPA:17756 xref: MA:0001587 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0003929 ! implied link automatically realized ! gut epithelium is_a: UBERON:0004807 ! implied link automatically realized ! respiratory system epithelium relationship: part_of UBERON:0001044 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001044 ! salivary gland [Term] id: UBERON:0004810 name: nephron tubule epithelium def: "An epithelium that is part of a nephron tubule [Obol]." [OBOL:automatic] synonym: "epithelial tissue of nephron tubule" EXACT [OBOL:automatic] synonym: "epithelial tissue of renal tubule" EXACT [OBOL:automatic] synonym: "epithelial tissue of tubulus renalis" EXACT [OBOL:automatic] synonym: "epithelium of nephron tubule" EXACT [OBOL:automatic] synonym: "epithelium of renal tubule" EXACT [OBOL:automatic] synonym: "epithelium of tubulus renalis" EXACT [OBOL:automatic] synonym: "nephron tubule epithelial tissue" EXACT [OBOL:automatic] synonym: "nephron tubule epithelium" EXACT [OBOL:automatic] synonym: "renal tubule epithelial tissue" EXACT [OBOL:automatic] synonym: "tubulus renalis epithelial tissue" EXACT [OBOL:automatic] synonym: "tubulus renalis epithelium" EXACT [OBOL:automatic] xref: MA:0001681 xref: ncithesaurus:Renal_Tubule_Epithelium is_a: UBERON:0004211 ! implied link automatically realized ! nephron epithelium relationship: part_of UBERON:0001231 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001231 ! nephron tubule [Term] id: UBERON:0004811 name: endometrium epithelium def: "An epithelium that is part of a endometrium [Obol]." [OBOL:automatic] synonym: "endometrium epithelial tissue" EXACT [OBOL:automatic] synonym: "epithelial tissue of endometrium" EXACT [OBOL:automatic] synonym: "epithelium of endometrium" EXACT [OBOL:automatic] synonym: "epithelium of tunica mucosa (endometrium)" EXACT [OBOL:automatic] xref: MA:0002731 is_a: UBERON:0006955 ! implied link automatically realized ! uterine epithelium relationship: part_of UBERON:0001295 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001295 ! endometrium [Term] id: UBERON:0004812 name: male prepuce epithelium def: "An epithelium that is part of a prepuce of penis [Obol]." [OBOL:automatic] comment: TODO - check prepuce vs male prepuce synonym: "epithelial tissue of foreskin" EXACT [OBOL:automatic] synonym: "epithelial tissue of penile prepuce" EXACT [OBOL:automatic] synonym: "epithelial tissue of prepuce" BROAD [OBOL:automatic] synonym: "epithelial tissue of prepuce of penis" EXACT [OBOL:automatic] synonym: "epithelium of foreskin" EXACT [OBOL:automatic] synonym: "epithelium of penile prepuce" EXACT [OBOL:automatic] synonym: "epithelium of prepuce" BROAD [OBOL:automatic] synonym: "epithelium of prepuce of penis" EXACT [OBOL:automatic] synonym: "foreskin epithelial tissue" EXACT [OBOL:automatic] synonym: "foreskin epithelium" EXACT [OBOL:automatic] synonym: "penile prepuce epithelial tissue" EXACT [OBOL:automatic] synonym: "penile prepuce epithelium" EXACT [OBOL:automatic] synonym: "prepuce epithelial tissue" BROAD [OBOL:automatic] synonym: "prepuce epithelium" EXACT [MA:0001753] synonym: "prepuce of penis epithelial tissue" EXACT [OBOL:automatic] synonym: "prepuce of penis epithelium" BROAD [OBOL:automatic] xref: EMAPA:30638 xref: EMAPA:30655 xref: MA:0001753 xref: ncithesaurus:Prepuce_Epithelium is_a: UBERON:0004803 ! implied link automatically realized ! penis epithelium relationship: part_of UBERON:0001332 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001332 ! prepuce of penis [Term] id: UBERON:0004813 name: seminiferous tubule epithelium def: "The epithelium lining the seminiferous tubules composed of primary male germ cells (spermatogonia) and supporting sertoli cells. As spermatogenesis proceeds, the developing germ cells migrate toward the lumen. The adluminal compartment, the inner two thirds of the tubules, contains spermatocytes and the more advanced germ cells[GAID]." [Wikipedia:Germinal_epithelium_(male)] synonym: "epithelial tissue of seminiferous tubule" EXACT [OBOL:automatic] synonym: "epithelial tissue of seminiferous tubule of testis" EXACT [OBOL:automatic] synonym: "epithelium of seminiferous tubule" EXACT [OBOL:automatic] synonym: "epithelium of seminiferous tubule of testis" EXACT [OBOL:automatic] synonym: "germinal epithelium (male)" EXACT [Wikipedia:Germinal_epithelium_(male)] synonym: "male germinal epithelium" EXACT [Wikipedia:Germinal_epithelium_(male)] synonym: "seminiferous epithelium" EXACT [BTO:0001811] synonym: "seminiferous tubule epithelial tissue" EXACT [OBOL:automatic] synonym: "testis germinal epithelium" EXACT [OG:0000631] synonym: "wall of seminiferous tubule" EXACT [Wikipedia:Germinal_epithelium_(male)] xref: BTO:0001811 xref: EHDAA:8148 xref: EHDAA2:0002009 xref: FMA:19885 xref: GAID:401 xref: MA:0001748 xref: MESH:A.05.360.444.849.700.700 xref: ncithesaurus:Seminiferous_Epithelium xref: OG:0000631 is_a: UBERON:0001136 ! mesothelium is_a: UBERON:0004910 ! implied link automatically realized ! epithelium of male gonad relationship: part_of UBERON:0001343 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001343 ! seminiferous tubule of testis [Term] id: UBERON:0004814 name: upper respiratory tract epithelium def: "An epithelium that is part of a upper respiratory tract [Obol]." [OBOL:automatic] synonym: "epithelial tissue of upper respiratory tract" EXACT [OBOL:automatic] synonym: "epithelium of upper respiratory tract" EXACT [OBOL:automatic] synonym: "upper respiratory tract epithelial tissue" EXACT [OBOL:automatic] xref: MA:0001912 is_a: UBERON:0004802 ! implied link automatically realized ! respiratory tract epithelium relationship: part_of UBERON:0001557 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001557 ! upper respiratory tract [Term] id: UBERON:0004815 name: lower respiratory tract epithelium def: "An epithelium that is part of a lower respiratory tract [Obol]." [OBOL:automatic] synonym: "epithelial tissue of lower respiratory tract" EXACT [OBOL:automatic] synonym: "epithelium of lower respiratory tract" EXACT [OBOL:automatic] synonym: "lower respiratory tract epithelial tissue" EXACT [OBOL:automatic] xref: MA:0001481 is_a: UBERON:0004802 ! implied link automatically realized ! respiratory tract epithelium relationship: part_of UBERON:0001558 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001558 ! lower respiratory tract [Term] id: UBERON:0004816 name: larynx epithelium def: "An epithelium that is part of a larynx [Obol]." [OBOL:automatic] synonym: "epithelial tissue of larynx" EXACT [OBOL:automatic] synonym: "epithelium of larynx" EXACT [OBOL:automatic] synonym: "laryngeal epithelium" EXACT [OBOL:automatic] synonym: "larynx epithelial tissue" EXACT [OBOL:automatic] xref: EHDAA2:0004065 xref: MA:0001765 xref: ncithesaurus:Laryngeal_Epithelium is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004814 ! implied link automatically realized ! upper respiratory tract epithelium relationship: part_of UBERON:0001737 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001737 ! larynx [Term] id: UBERON:0004817 name: lacrimal gland epithelium def: "An epithelium that is part of a lacrimal gland [Obol]." [OBOL:automatic] synonym: "epithelial tissue of lacrimal gland" EXACT [OBOL:automatic] synonym: "epithelium of lacrimal gland" EXACT [OBOL:automatic] synonym: "lacrimal gland epithelial tissue" EXACT [OBOL:automatic] xref: MA:0001297 is_a: UBERON:0007625 ! implied link automatically realized ! pigment epithelium of eye relationship: part_of UBERON:0001817 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001817 ! lacrimal gland [Term] id: UBERON:0004818 name: terminal bronchus epithelium def: "An epithelium that is part of a terminal bronchus [Obol]." [OBOL:automatic] synonym: "epithelial tissue of terminal bronchus" EXACT [OBOL:automatic] synonym: "epithelium of terminal bronchus" EXACT [OBOL:automatic] synonym: "terminal bronchus epithelial tissue" EXACT [OBOL:automatic] xref: MA:0001851 is_a: UBERON:0002031 ! implied link automatically realized ! epithelium of bronchus relationship: part_of UBERON:0002041 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002041 ! terminal bronchus [Term] id: UBERON:0004819 name: kidney epithelium def: "An epithelium that is part of a kidney [Obol]." [OBOL:automatic] synonym: "epithelial tissue of kidney" EXACT [OBOL:automatic] synonym: "epithelium of kidney" EXACT [OBOL:automatic] synonym: "kidney epithelial tissue" EXACT [OBOL:automatic] xref: BTO:0000059 xref: MA:0002846 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0002113 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002113 ! kidney [Term] id: UBERON:0004820 name: bile duct epithelium def: "Epithelium of the gallbladder and the intrahepatic and extrahepatic bile ducts." [BTO:0001513] comment: todo - check if BTO terms need merged synonym: "bile duct epithelial tissue" EXACT [OBOL:automatic] synonym: "biliary duct epithelial tissue" EXACT [OBOL:automatic] synonym: "biliary duct epithelium" EXACT [OBOL:automatic] synonym: "biliary epithelium" EXACT [BTO:0001513] synonym: "epithelial tissue of bile duct" EXACT [OBOL:automatic] synonym: "epithelial tissue of biliary duct" EXACT [OBOL:automatic] synonym: "epithelium of bile duct" EXACT [OBOL:automatic] synonym: "epithelium of biliary duct" EXACT [OBOL:automatic] xref: BTO:0000417 xref: BTO:0001513 xref: MA:0001629 xref: ncithesaurus:Bile_Duct_Epithelium is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005911 ! implied link automatically realized ! endo-epithelium relationship: part_of UBERON:0002394 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002394 ! bile duct [Term] id: UBERON:0004821 name: pulmonary alveolus epithelium def: "the epithelial layer of the alveoli[MP]. The layer of cells covering the lining of the tiny air sacs at the end of the bronchioles[BTO]." [BTO:0003511, MP:0010898] synonym: "alveolus epithelial tissue" EXACT [OBOL:automatic] synonym: "alveolus epithelium" EXACT [MA:0001771] synonym: "epithelial tissue of alveolus" EXACT [OBOL:automatic] synonym: "epithelium of alveolus" EXACT [OBOL:automatic] synonym: "pulmonary alveolar epithelium" EXACT [FMA:63915] synonym: "pulmonary alveolus epithelium" EXACT [MP:0010898] xref: BTO:0003511 xref: FMA:63915 xref: MA:0001771 is_a: UBERON:0000115 ! implied link automatically realized ! lung epithelium is_a: UBERON:0000487 {source="FMA"} ! simple squamous epithelium relationship: part_of UBERON:0002299 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002299 ! alveolus of lung relationship: part_of UBERON:0004894 {source="FMA"} ! alveolar wall [Term] id: UBERON:0004822 name: extrahepatic bile duct epithelium def: "An epithelium that is part of a extrahepatic bile duct [Obol]." [OBOL:automatic] synonym: "epithelial tissue of extrahepatic bile duct" EXACT [OBOL:automatic] synonym: "epithelium of extrahepatic bile duct" EXACT [OBOL:automatic] synonym: "extrahepatic bile duct epithelial tissue" EXACT [OBOL:automatic] xref: MA:0002661 xref: ncithesaurus:Extrahepatic_Bile_Duct_Epithelium is_a: UBERON:0004820 ! implied link automatically realized ! bile duct epithelium relationship: part_of UBERON:0003703 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0003703 ! extrahepatic bile duct [Term] id: UBERON:0004823 name: intrahepatic bile duct epithelium def: "An epithelium that is part of a intrahepatic bile duct [Obol]." [OBOL:automatic] synonym: "epithelial tissue of intrahepatic bile duct" EXACT [OBOL:automatic] synonym: "epithelium of intrahepatic bile duct" EXACT [OBOL:automatic] synonym: "intrahepatic bile duct epithelial tissue" EXACT [OBOL:automatic] xref: MA:0002662 xref: ncithesaurus:Intrahepatic_Bile_Duct_Epithelium is_a: UBERON:0004820 ! implied link automatically realized ! bile duct epithelium relationship: part_of UBERON:0003704 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0003704 ! intrahepatic bile duct [Term] id: UBERON:0004825 name: dental lamina def: "a band of epithelial tissue seen in histologic sections of a developing tooth. The dental lamina is first evidence of tooth development and begins at the sixth week in utero or three weeks after the rupture of the buccopharyngeal membrane. It is formed when cells of the oral ectoderm proliferate faster than cells of other areas. Best described as an in-growth of oral ectoderm, the dental lamina is frequently distinguished from the vestibular lamina, which develops concurrently. This dividing tissue is surrounded by and, some would argue, stimulated by ectomysenchymal growth. When it is present, the dental lamina connects the developing tooth bud to the epithelium of the oral cavity. Eventually, the dental lamina disintegrates into small clusters of epithelium and is resorbed. In situations when the clusters are not resorbed, (this remanent of the dental lamina is sometimes known as the glands of Serres) eruption cysts are formed over the developing tooth and delay its eruption into the oral cavity. This invagination of ectodermal tissues is the proginitor to the later ameloblasts and enamel while the ectomysenchyme is responsible for the dental papilla and later odontoblasts." [Wikipedia:Dental_lamina] xref: EMAPA:18292 xref: EMAPA:18295 xref: EMAPA:18298 xref: EMAPA:18301 xref: MA:0001597 xref: SCTID:362862007 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0000957 ! lamina is_a: UBERON:0003914 ! epithelial tube is_a: UBERON:0003929 ! implied link automatically realized ! gut epithelium is_a: UBERON:0004807 ! implied link automatically realized ! respiratory system epithelium relationship: part_of UBERON:0001091 {source="MA"} ! calcareous tooth [Term] id: UBERON:0004827 name: thyroid gland medulla def: "A medulla that is part of a thyroid [Obol]." [OBOL:automatic] synonym: "medulla of thyroid" EXACT [OBOL:automatic] synonym: "medulla of thyroid follicle" EXACT [OBOL:automatic] synonym: "medulla of thyroid gland" EXACT [OBOL:automatic] synonym: "medulla of thyroid gland follicle" EXACT [OBOL:automatic] synonym: "thyroid follicle medulla" EXACT [OBOL:automatic] synonym: "thyroid gland follicle medulla" EXACT [OBOL:automatic] synonym: "thyroid medulla" EXACT [OBOL:automatic] xref: MA:0000132 is_a: UBERON:0000958 ! implied link automatically realized ! medulla is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: part_of UBERON:0002046 intersection_of: UBERON:0000958 ! medulla intersection_of: part_of UBERON:0002046 ! thyroid gland [Term] id: UBERON:0004829 name: urethra skeletal muscle def: "A portion of skeletal muscle tissue that is part of a urethra [Obol]." [OBOL:automatic] synonym: "skeletal muscle of urethra" EXACT [OBOL:automatic] synonym: "skeletal muscle tissue of urethra" EXACT [OBOL:automatic] synonym: "urethra skeletal muscle tissue" EXACT [OBOL:automatic] synonym: "urethral skeletal muscle" RELATED [MA:0001690] xref: MA:0001690 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001134 ! implied link automatically realized ! skeletal muscle tissue is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0000057 intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: part_of UBERON:0000057 ! urethra relationship: part_of UBERON:0003829 ! urethra muscle [Term] id: UBERON:0004830 name: respiratory system skeletal muscle def: "A portion of skeletal muscle tissue that is part of a respiratory system [Obol]." [OBOL:automatic] synonym: "respiratory system skeletal muscle tissue" EXACT [OBOL:automatic] synonym: "skeletal muscle of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "skeletal muscle of respiratory system" EXACT [OBOL:automatic] synonym: "skeletal muscle tissue of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "skeletal muscle tissue of respiratory system" EXACT [OBOL:automatic] xref: MA:0001829 is_a: UBERON:0001134 ! implied link automatically realized ! skeletal muscle tissue relationship: part_of UBERON:0001004 intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0004831 name: esophagus skeletal muscle def: "A portion of skeletal muscle tissue that is part of a esophagus [Obol]." [OBOL:automatic] synonym: "esophagus skeletal muscle tissue" EXACT [OBOL:automatic] synonym: "gullet skeletal muscle" EXACT [OBOL:automatic] synonym: "gullet skeletal muscle tissue" EXACT [OBOL:automatic] synonym: "oesophagus skeletal muscle" EXACT [OBOL:automatic] synonym: "oesophagus skeletal muscle tissue" EXACT [OBOL:automatic] synonym: "skeletal muscle of esophagus" EXACT [OBOL:automatic] synonym: "skeletal muscle of gullet" EXACT [OBOL:automatic] synonym: "skeletal muscle of oesophagus" EXACT [OBOL:automatic] synonym: "skeletal muscle tissue of esophagus" EXACT [OBOL:automatic] synonym: "skeletal muscle tissue of gullet" EXACT [OBOL:automatic] synonym: "skeletal muscle tissue of oesophagus" EXACT [OBOL:automatic] xref: MA:0001572 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003898 ! implied link automatically realized ! skeletal muscle of trunk relationship: part_of UBERON:0001043 intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: part_of UBERON:0001043 ! esophagus relationship: part_of UBERON:0003832 ! esophagus muscle [Term] id: UBERON:0004832 name: anal region skeletal muscle def: "A portion of skeletal muscle tissue that is part of an anal region [Obol]." [OBOL:automatic] synonym: "anal part of perineum skeletal muscle" EXACT [OBOL:automatic] synonym: "anal part of perineum skeletal muscle tissue" EXACT [OBOL:automatic] synonym: "anal region skeletal muscle tissue" EXACT [OBOL:automatic] synonym: "anal triangle skeletal muscle" EXACT [OBOL:automatic] synonym: "anal triangle skeletal muscle tissue" EXACT [OBOL:automatic] synonym: "skeletal muscle of anal part of perineum" EXACT [OBOL:automatic] synonym: "skeletal muscle of anal region" EXACT [OBOL:automatic] synonym: "skeletal muscle of anal triangle" EXACT [OBOL:automatic] synonym: "skeletal muscle tissue of anal part of perineum" EXACT [OBOL:automatic] synonym: "skeletal muscle tissue of anal region" EXACT [OBOL:automatic] synonym: "skeletal muscle tissue of anal triangle" EXACT [OBOL:automatic] xref: MA:0001530 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001134 ! implied link automatically realized ! skeletal muscle tissue relationship: part_of UBERON:0001353 intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: part_of UBERON:0001353 ! anal region [Term] id: UBERON:0004833 name: lip skeletal muscle def: "A portion of skeletal muscle tissue that is part of a lip [Obol]." [OBOL:automatic] synonym: "lip skeletal muscle tissue" EXACT [OBOL:automatic] synonym: "skeletal muscle of lip" EXACT [OBOL:automatic] synonym: "skeletal muscle tissue of lip" EXACT [OBOL:automatic] xref: MA:0001578 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0003899 ! implied link automatically realized ! skeletal muscle of head relationship: part_of UBERON:0001833 intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: part_of UBERON:0001833 ! lip [Term] id: UBERON:0004834 name: hepatic duct smooth muscle xref: MA:0001640 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001135 ! implied link automatically realized ! smooth muscle tissue relationship: part_of UBERON:0005171 intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0005171 ! hepatic duct [Term] id: UBERON:0004835 name: epididymis smooth muscle def: "A portion of smooth muscle tissue that is part of a epididymis [Obol]." [OBOL:automatic] synonym: "epididymis involuntary muscle" EXACT [OBOL:automatic] synonym: "epididymis non-striated muscle" EXACT [OBOL:automatic] synonym: "epididymis smooth muscle tissue" EXACT [OBOL:automatic] synonym: "epididymus involuntary muscle" EXACT [OBOL:automatic] synonym: "epididymus non-striated muscle" EXACT [OBOL:automatic] synonym: "epididymus smooth muscle" EXACT [OBOL:automatic] synonym: "epididymus smooth muscle tissue" EXACT [OBOL:automatic] synonym: "involuntary muscle of epididymis" EXACT [OBOL:automatic] synonym: "involuntary muscle of epididymus" EXACT [OBOL:automatic] synonym: "non-striated muscle of epididymis" EXACT [OBOL:automatic] synonym: "non-striated muscle of epididymus" EXACT [OBOL:automatic] synonym: "smooth muscle of epididymis" EXACT [OBOL:automatic] synonym: "smooth muscle of epididymus" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of epididymis" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of epididymus" EXACT [OBOL:automatic] xref: MA:0001736 is_a: UBERON:0001135 ! implied link automatically realized ! smooth muscle tissue is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0001301 intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0001301 ! epididymis [Term] id: UBERON:0004848 name: respiratory system arterial endothelium def: "An endothelium of artery that is part of a respiratory system [Obol]." [OBOL:automatic] synonym: "apparatus respiratorius arterial endothelium" EXACT [OBOL:automatic] synonym: "apparatus respiratorius artery endothelium" EXACT [OBOL:automatic] synonym: "apparatus respiratorius endothelium of artery" EXACT [OBOL:automatic] synonym: "arterial endothelium of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "arterial endothelium of respiratory system" EXACT [OBOL:automatic] synonym: "artery endothelium of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "artery endothelium of respiratory system" EXACT [OBOL:automatic] synonym: "endothelium of artery of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "endothelium of artery of respiratory system" EXACT [OBOL:automatic] synonym: "respiratory system artery endothelium" EXACT [OBOL:automatic] synonym: "respiratory system endothelium of artery" EXACT [OBOL:automatic] xref: MA:0001801 is_a: UBERON:0001917 ! implied link automatically realized ! endothelium of artery is_a: UBERON:0004702 ! implied link automatically realized ! respiratory system blood vessel endothelium relationship: part_of UBERON:0001004 intersection_of: UBERON:0001917 ! endothelium of artery intersection_of: part_of UBERON:0001004 ! respiratory system relationship: part_of UBERON:0003643 ! respiratory system arterial blood vessel [Term] id: UBERON:0004849 name: respiratory system venous endothelium def: "An endothelium of vein that is part of a respiratory system [Obol]." [OBOL:automatic] synonym: "apparatus respiratorius endothelium of vein" EXACT [OBOL:automatic] synonym: "apparatus respiratorius vein endothelium" EXACT [OBOL:automatic] synonym: "apparatus respiratorius venous endothelium" EXACT [OBOL:automatic] synonym: "endothelium of vein of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "endothelium of vein of respiratory system" EXACT [OBOL:automatic] synonym: "respiratory system endothelium of vein" EXACT [OBOL:automatic] synonym: "respiratory system vein endothelium" EXACT [OBOL:automatic] synonym: "vein endothelium of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "vein endothelium of respiratory system" EXACT [OBOL:automatic] synonym: "venous endothelium of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "venous endothelium of respiratory system" EXACT [OBOL:automatic] xref: MA:0001811 is_a: UBERON:0001919 ! implied link automatically realized ! endothelium of vein is_a: UBERON:0004702 ! implied link automatically realized ! respiratory system blood vessel endothelium relationship: part_of UBERON:0001004 intersection_of: UBERON:0001919 ! endothelium of vein intersection_of: part_of UBERON:0001004 ! respiratory system relationship: part_of UBERON:0003476 ! respiratory system venous blood vessel [Term] id: UBERON:0004850 name: lymph node endothelium def: "An endothelium that is part of a lymph node [Obol]." [OBOL:automatic] synonym: "endothelium of lymph node" EXACT [OBOL:automatic] xref: MA:0000741 is_a: UBERON:0001986 ! implied link automatically realized ! endothelium relationship: part_of UBERON:0000029 intersection_of: UBERON:0001986 ! endothelium intersection_of: part_of UBERON:0000029 ! lymph node [Term] id: UBERON:0004851 name: aorta endothelium def: "An endothelium that is part of an aorta [Obol]." [OBOL:automatic] synonym: "adult aorta endothelium" EXACT [OBOL:automatic] synonym: "endothelium of adult aorta" EXACT [OBOL:automatic] synonym: "endothelium of aorta" EXACT [OBOL:automatic] synonym: "endothelium of trunk of aortic tree" EXACT [OBOL:automatic] synonym: "endothelium of trunk of systemic arterial tree" EXACT [OBOL:automatic] synonym: "trunk of aortic tree endothelium" EXACT [OBOL:automatic] synonym: "trunk of systemic arterial tree endothelium" EXACT [OBOL:automatic] xref: BTO:0000394 xref: EFO:0002597 xref: MA:0000701 xref: ncithesaurus:Aorta_Endothelium is_a: UBERON:0001917 ! implied link automatically realized ! endothelium of artery relationship: part_of UBERON:0000947 intersection_of: UBERON:0001986 ! endothelium intersection_of: part_of UBERON:0000947 ! aorta [Term] id: UBERON:0004852 name: cardiovascular system endothelium def: "An endothelium that is part of the cardiovascular system." [UBERON:cjm] comment: consider merging with 'endothelium' subset: vertebrate_core xref: BTO:0001853 xref: GAID:519 xref: MA:0000717 xref: MESH:A.07.231.330 xref: OG:0001217 xref: XAO:0000356 xref: ZFA:0001639 is_a: UBERON:0001986 ! implied link automatically realized ! endothelium relationship: part_of UBERON:0004535 intersection_of: UBERON:0001986 ! endothelium intersection_of: part_of UBERON:0004535 ! cardiovascular system [Term] id: UBERON:0004854 name: gastrointestinal system mesentery def: "A mesentery that is part of a digestive system [Obol]." [OBOL:automatic] synonym: "digestive system mesentery" EXACT [OBOL:automatic] synonym: "mesentery of digestive system" EXACT [OBOL:automatic] synonym: "mesentery of gastrointestinal system" EXACT [OBOL:automatic] xref: MA:0001900 is_a: UBERON:0002095 ! implied link automatically realized ! mesentery is_a: UBERON:0004782 ! implied link automatically realized ! gastrointestinal system serosa relationship: part_of UBERON:0005409 intersection_of: UBERON:0002095 ! mesentery intersection_of: part_of UBERON:0005409 ! gastrointestinal system [Term] id: UBERON:0004857 name: skeletal muscle connective tissue comment: no corresponding term in FMA? Skeletal muscle endomysium would be a subtype synonym: "connective tissue of skeletal muscle" EXACT [OBOL:automatic] synonym: "connective tissue of skeletal muscle tissue" EXACT [OBOL:automatic] synonym: "portion of connective tissue of skeletal muscle" EXACT [OBOL:automatic] synonym: "portion of connective tissue of skeletal muscle tissue" EXACT [OBOL:automatic] synonym: "skeletal muscle endomysium" EXACT [FMA:86022] synonym: "skeletal muscle interstitial tissue" RELATED [MA:0002868] synonym: "skeletal muscle interstitum" RELATED [MA:0002868] synonym: "skeletal muscle portion of connective tissue" EXACT [OBOL:automatic] synonym: "skeletal muscle textus connectivus" EXACT [OBOL:automatic] synonym: "skeletal muscle tissue connective tissue" EXACT [OBOL:automatic] synonym: "skeletal muscle tissue portion of connective tissue" EXACT [OBOL:automatic] synonym: "skeletal muscle tissue textus connectivus" EXACT [OBOL:automatic] synonym: "textus connectivus of skeletal muscle" EXACT [OBOL:automatic] synonym: "textus connectivus of skeletal muscle tissue" EXACT [OBOL:automatic] xref: FMA:86022 xref: MA:0002868 is_a: UBERON:0002384 ! implied link automatically realized ! connective tissue relationship: surrounds UBERON:0001134 intersection_of: UBERON:0002384 ! connective tissue intersection_of: surrounds UBERON:0001134 ! skeletal muscle tissue [Term] id: UBERON:0004858 name: cellular cartilage xref: MA:0000105 xref: SCTID:81997001 is_a: UBERON:0002418 ! cartilage tissue [Term] id: UBERON:0004859 name: eye gland def: "A gland that is part of a eye [Obol]." [OBOL:automatic] subset: organ_slim synonym: "gland of eye" EXACT [OBOL:automatic] xref: MA:0000267 is_a: UBERON:0002530 ! implied link automatically realized ! gland relationship: part_of UBERON:0000970 intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0000970 ! eye relationship: part_of UBERON:0000019 ! camera-type eye [Term] id: UBERON:0004860 name: brain ventricular zone is_obsolete: true consider: UBERON:0003053 [Term] id: UBERON:0004861 name: right lung alveolus def: "An alveolus that is part of a right lung [Obol]." [OBOL:automatic] synonym: "alveolus of right lung" EXACT [OBOL:automatic] xref: EMAPA:19184 xref: EMAPA:19186 xref: EMAPA:19188 xref: EMAPA:19190 xref: MA:0001786 xref: ncithesaurus:Right_Lung_Alveolus is_a: UBERON:0002299 ! implied link automatically realized ! alveolus of lung relationship: part_of UBERON:0002167 intersection_of: UBERON:0003215 ! alveolus intersection_of: part_of UBERON:0002167 ! right lung relationship: part_of UBERON:0006526 ! right lung alveolar system [Term] id: UBERON:0004862 name: left lung alveolus def: "An alveolus that is part of a left lung [Obol]." [OBOL:automatic] synonym: "alveolus of left lung" EXACT [OBOL:automatic] xref: EMAPA:19182 xref: MA:0001777 xref: ncithesaurus:Left_Lung_Alveolus is_a: UBERON:0002299 ! implied link automatically realized ! alveolus of lung relationship: part_of UBERON:0002168 intersection_of: UBERON:0003215 ! alveolus intersection_of: part_of UBERON:0002168 ! left lung relationship: part_of UBERON:0006525 ! left lung alveolar system [Term] id: UBERON:0004863 name: thoracic sympathetic nerve trunk def: "A sympathetic nerve trunk that is part of a thorax [Obol]." [OBOL:automatic] synonym: "nerve trunk of sympathetic nervous system of thorax" EXACT [OBOL:automatic] synonym: "nerve trunk of sympathetic part of autonomic division of nervous system of thorax" EXACT [OBOL:automatic] synonym: "sympathetic nerve trunk of thorax" EXACT [OBOL:automatic] synonym: "sympathetic nervous system nerve trunk of thorax" EXACT [OBOL:automatic] synonym: "thorax nerve trunk of sympathetic nervous system" EXACT [OBOL:automatic] synonym: "thorax nerve trunk of sympathetic part of autonomic division of nervous system" EXACT [OBOL:automatic] synonym: "thorax sympathetic nerve trunk" EXACT [OBOL:automatic] synonym: "thorax sympathetic nervous system nerve trunk" EXACT [OBOL:automatic] xref: MA:0001165 xref: ncithesaurus:Thoracic_Sympathetic_Nerve_Trunk is_a: UBERON:0004295 ! implied link automatically realized ! sympathetic nerve trunk relationship: part_of UBERON:0000915 intersection_of: UBERON:0004295 ! sympathetic nerve trunk intersection_of: part_of UBERON:0000915 ! thoracic segment of trunk [Term] id: UBERON:0004864 name: vasculature of retina def: "A vasculature that is part of a retina [Obol]." [OBOL:automatic] synonym: "retina vasculature" EXACT [OBOL:automatic] synonym: "retinal blood vessels" EXACT [FMA:76552] synonym: "retinal blood vessels set" EXACT [FMA:76552] synonym: "retinal vasculature" EXACT [OBOL:automatic] synonym: "set of blood vessels of retina" EXACT [OBOL:automatic] synonym: "set of retinal blood vessels" EXACT [FMA:76552] synonym: "vasa sanguinea retinae" EXACT [FMA:76552, FMA:TA] xref: FMA:76552 xref: MESH:A.07.231.611 xref: XAO:0004153 is_a: UBERON:0002203 ! implied link automatically realized ! vasculature of eye is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0000966 intersection_of: UBERON:0002049 ! vasculature intersection_of: part_of UBERON:0000966 ! retina [Term] id: UBERON:0004865 name: teleost parietal bone def: "Paired dermal bone that covers the hind part of the cranium, overlapping the dorsal edge of the sphenotic, pterotic, epiotic and the anterior edge of the supraoccipital. The parietal are overlapped anteriorly by the frontal." [ZFA:0000486] comment: The parietal bone in teleost fish is the homolog of the frontal bone in tetrapods synonym: "frontal bone" NARROW [FMA:52734] synonym: "parietal bone" NARROW SENSU [TAO:0000486] synonym: "post parietal" RELATED [ZFA:0000486] synonym: "teleost parietal" EXACT [] xref: OG:0001326 xref: TAO:0000486 xref: ZFA:0000486 is_a: UBERON:0002514 ! intramembranous bone is_a: UBERON:0004766 ! implied link automatically realized ! cranial bone relationship: part_of UBERON:0001703 ! neurocranium [Term] id: UBERON:0004866 name: teleost frontal bone def: "One of two large elongated paired dermal bones that roof the cranium and bear part of the supraorbital canal. The frontal bones cover the upper edge of the lateral ethmoid, orbitosphenoid and pterosphenoids and overlaps the parietal bone posteriorly." [ZFA:0000514] comment: The frontal bone in teleost fish is the homolog of the parietal bone in tetrapods synonym: "frontal bone" NARROW [TAO:0000514] synonym: "teleost frontal" EXACT [TAO:0000514] synonym: "teleost frontal bone" EXACT [TAO:0000514] xref: TAO:0000514 xref: ZFA:0000514 is_a: UBERON:0002514 ! intramembranous bone is_a: UBERON:0004766 ! implied link automatically realized ! cranial bone relationship: part_of UBERON:0001703 ! neurocranium [Term] id: UBERON:0004867 name: orbital cavity xref: FMA:84961 xref: SCTID:280541000 is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0001697 ! orbit [Term] id: UBERON:0004868 name: tapetum lucidum def: "a layer of tissue in the eye of many vertebrate animals, that lies immediately behind or sometimes within the retina. It reflects visible light back through the retina, increasing the light available to the photoreceptors" [Wikipedia:Tapetum_lucidum] xref: BTO:0001828 xref: SCTID:3034006 is_a: UBERON:0000479 ! tissue relationship: adjacent_to UBERON:0000966 ! retina relationship: part_of UBERON:0000970 ! eye [Term] id: UBERON:0004869 name: parietal organ def: "A part of the epithalamus present in some animal species. The eye may be photoreceptive and is usually associated with the pineal gland, regulating circadian rhythmicity and hormone production for thermoregulation. The parietal eye is a part of the epithalamus, which can be divided into two major parts; the epiphysis (the pineal organ, or pineal gland if mostly endocrine) and the parietal organ (often called the parietal eye, or third eye if it is photoreceptive). It arises as an anterior evagination of the pineal organ or as a separate outgrowth of the roof of the diencephalon. In some species, it protrudes through the skull.[4] The parietal eye uses a different biochemical method of detecting light than rod cells or cone cells in a normal vertebrate eye[WP]." [Wikipedia:Parietal_eye] synonym: "parietal eye" EXACT [Wikipedia:Parietal_eye] synonym: "third eye" RELATED [Wikipedia:Parietal_eye] xref: EMAPA:19031 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001899 ! epithalamus [Term] id: UBERON:0004870 name: superficial cervical lymph node def: "A group of nodes lying along the external jugular vein; they drain the skin and superficial structures over the region of the sternocleidomastoid muscle and anterior cervical regions. Efferent vessels drain to the deep cervical lymph nodes. Lymph nodes can be further subdivided into anterior and lateral groupings." [CL:tm, ref:Stedmans, Wikipedia:Superficial_cervical_lymph_nodes] synonym: "prescapular lymph node" RELATED [] xref: MA:0002886 xref: ncithesaurus:Superficial_Cervical_Lymph_Node xref: SCTID:279144003 is_a: UBERON:0002429 ! cervical lymph node is_a: UBERON:0003968 ! peripheral lymph node [Term] id: UBERON:0004871 name: somatic layer of lateral plate mesoderm def: "Layer of lateral plate mesoderm that forms the future body wall - underlies the ectoderm[WP]." [Wikipedia:Lateral_plate_mesoderm#Division_into_layers] comment: check BILA synonym: "outer layer of lateral plate mesoderm" EXACT [] synonym: "parietal mesoderm" RELATED [ISBN:9780878932504 "Developmental Biology"] synonym: "somatic mesoderm" RELATED [BILA:0000047] xref: AAO:0011100 xref: BILA:0000047 xref: XAO:0000271 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0003081 ! lateral plate mesoderm [Term] id: UBERON:0004872 name: splanchnic layer of lateral plate mesoderm def: "Layer of lateral plate mesoderm that forms the circulatory system and future gut wall - overlies endoderm[WP]." [Wikipedia:Lateral_plate_mesoderm#Division_into_layers] comment: todo - check BILA synonym: "inner layer of lateral plate mesoderm" EXACT [] synonym: "splanchnic mesoderm" RELATED [ISBN:9780878932504 "Developmental Biology"] synonym: "visceral mesoderm" BROAD [BILA:0000044, http://www.drugs.com/dict/visceral-mesoderm.html, http://www.stedmans.com/] xref: AAO:0011102 xref: BILA:0000044 xref: XAO:0000276 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0003081 ! lateral plate mesoderm [Term] id: UBERON:0004873 name: splanchnopleure def: "a structure created during embryogenesis when the lateral mesoderm splits into two layers - the inner (or splanchnic) layer adheres to the endoderm, and with it forms the splanchnopleure[WP]." [Wikipedia:Splanchnopleure] comment: todo - check relationship to LPM synonym: "ventral splanchnic mesoderm" RELATED [Wikipedia:Intraembryonic_coelom] xref: EHDAA:383 xref: EHDAA2:0001903 xref: EMAPA:16181 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/28/Gray16.png/200px-Gray16.png xref: ncithesaurus:Splanchnopleure xref: OG:0000558 is_a: UBERON:0005423 ! developing anatomical structure relationship: overlaps UBERON:0000925 ! endoderm relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0006258 {source="EHDAA2"} ! lateral plate mesenchyme [Term] id: UBERON:0004874 name: somatopleure def: "a structure created during embryogenesis when the lateral mesoderm splits into two layers - the outer (or somatic) layer becomes applied to the inner surface of the ectoderm, and with it forms the somatopleure.[WP]." [Wikipedia:Somatopleure] comment: todo - check relationship to LPM xref: EHDAA:381 xref: EHDAA2:0001847 xref: EMAPA:16180 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/28/Gray16.png/200px-Gray16.png xref: ncithesaurus:Somatopleure xref: OG:0000557 is_a: UBERON:0005423 ! developing anatomical structure relationship: overlaps UBERON:0000924 ! ectoderm relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0006258 {source="EHDAA2"} ! lateral plate mesenchyme [Term] id: UBERON:0004875 name: nephrogenic cord def: "a portion of the urogenital ridge which is the source of much of the urinary system[WP]." [Wikipedia:Nephrogenic_cord] comment: part_of or develops_from urogenital ridge? xref: FMA:72168 xref: ncithesaurus:Nephrogenic_Cord xref: SCTID:361405003 is_a: UBERON:0005423 ! developing anatomical structure relationship: develops_from UBERON:0004876 ! urogenital ridge relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0004876 name: urogenital ridge def: "An embryological structure which give rise to a portion of the external genitalia. It differentiates into two structures: gonadal ridge -- medial -- primarily reproductive system; nephrogenic cord -- lateral -- primarily urinary system. In the female, the urogenital folds become the labia minora. In contrast, the labia majora are formed by the labioscrotal folds; In the male, they form the spongy urethra and a portion of the shaft of the penis, not including the glans.[WP]." [Wikipedia:Urogenital_folds] comment: Less commonly, urogenital fold refers to the fold in the mesonephros which is the precursor of e.g. the suspensory ligament of the ovary. This is the case in older versions of Gray's anatomy[WP] synonym: "urogenital fold" EXACT [] xref: BTO:0001402 xref: EHDAA2:0004022 xref: EMAPA:30888 xref: EMAPA:30899 xref: ncithesaurus:Urogenital_Ridge xref: SCTID:308801004 is_a: UBERON:0005423 ! developing anatomical structure relationship: develops_from UBERON:0003064 ! intermediate mesoderm relationship: develops_into UBERON:0004176 ! external reproductive organ relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0004877 name: visceral endoderm def: "Visceral endoderm, a population of extraembyonic endoderm, is an extraembryonic tissue that functions in a regulatory capacity but does not contribute directly to the formation of any adult organs[PMID:15905405]. primitive endoderm-derived tissue which remains in contact with and surrounds the extra-embryonic ectoderm and the epiblast and provides signals for the differentiation and patterning of the epiblast; a small number of visceral endoderm cells also contribute to the endoderm of the embryonic gut[MP]." [PMID:15905405] xref: BTO:0003487 xref: EFO:0003626 xref: EMAPA:16058 is_a: UBERON:0000478 ! extraembryonic structure is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: develops_from UBERON:0000925 ! endoderm [Term] id: UBERON:0004878 name: distal visceral endoderm def: "precursors of the anterior visceral endoderm that arises at the distal tip of the embryo[MP]" [MP:0010126] is_a: UBERON:0000478 ! extraembryonic structure is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: develops_from UBERON:0000925 ! endoderm [Term] id: UBERON:0004879 name: marginal zone of embryo comment: todo - check subset: early_development synonym: "margin" BROAD [ZFA:0000038] synonym: "marginal zone" BROAD [XAO:0000068] xref: AAO:0010448 xref: ncithesaurus:Marginal_Zone xref: XAO:0000068 xref: ZFA:0000038 is_a: UBERON:0002050 ! embryonic structure [Term] id: UBERON:0004880 name: chordamesoderm def: "The central region of trunk mesoderm. This tissue forms the notochord" [UBERON:cjm] comment: note that WP treats this as synonym of axial mesoderm synonym: "axial chorda mesoderm" EXACT [ZFA:0000091] synonym: "chorda mesoderm" EXACT [] synonym: "presumptive notochord" EXACT [ZFA:0000091] xref: AAO:0000478 xref: EFO:0003426 xref: ZFA:0000091 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0003068 ! axial mesoderm [Term] id: UBERON:0004881 name: prechordal mesoderm is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0003068 ! axial mesoderm [Term] id: UBERON:0004882 name: eponychium def: "Thickened layer of skin surrounding fingernails and toenails. Beneath the cuticle is a thin layer of a membrane known as the pterygium. The function is to protect the area between the nail and epidermis from exposure to harmful bacteria. The vascularization pattern is similar to that of perionychium. The eponychium is the end of the proximal fold that folds back upon itself to shed an epidermal layer of skin onto the newly formed nail plate. This layer of non-living, almost invisible skin is the cuticle that 'rides out' on the surface of the nail plate. Together, the eponychium and the cuticle form a protective seal. The cuticle on the nail plate is dead cells and is often removed during manicure, but the eponychium is living cells and should not be touched.[6] The perionyx is the projecting edge of the eponychium covering the proximal strip of the lunula[WP]." [Wikipedia:Eponychium] synonym: "cuticle" RELATED [MA:0002704] xref: FMA:77859 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9f/Fingernail_label.jpg/200px-Fingernail_label.jpg xref: MA:0002704 xref: SCTID:24631007 is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0004923 ! organ component layer relationship: part_of UBERON:0001003 ! epidermis relationship: surrounds UBERON:0001705 ! nail [Term] id: UBERON:0004883 name: lung mesenchyme def: "the mass of tissue made up of mesenchymal cells in the lung." [GO:0060484] synonym: "lung-associated mesenchyme" EXACT [GO:0060484] synonym: "mesenchyme of lung" EXACT [OBOL:automatic] synonym: "pulmonary mesenchyme" EXACT [GO:0060484] is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005256 ! implied link automatically realized ! trunk mesenchyme relationship: part_of UBERON:0002048 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0002048 ! lung relationship: develops_from UBERON:0003081 ! lateral plate mesoderm [Term] id: UBERON:0004884 name: lobar bronchus mesenchyme def: "the mass of tissue composed of mesenchymal cells in the lobar bronchus.." [GO:0060483] synonym: "mesenchyme of lobar bronchus" EXACT [OBOL:automatic] is_a: UBERON:0004883 ! implied link automatically realized ! lung mesenchyme relationship: part_of UBERON:0002183 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0002183 ! lobar bronchus [Term] id: UBERON:0004885 name: hilum alt_id: UBERON:0004460 def: "An anatomical cavity, depression or pit where structures are attached." [Wikipedia:Hilum] synonym: "hilus" EXACT [Wikipedia:Hilum] xref: EMAPA:19303 xref: FMA:57836 xref: galen:Hilum xref: ncithesaurus:Hilum is_a: UBERON:0000161 ! orifice [Term] id: UBERON:0004886 name: lung hilus def: "A depression on the surface of the lung where the bronchus, blood vessels and nerves enter." [GOC:lung_mtg, ISBN:0721662544 "Dorland's Illustrated Medical Dictionary"] synonym: "hilum of lung" EXACT [] synonym: "hilum pulmonis" EXACT [FMA:7330, FMA:TA] synonym: "hilus of lung" EXACT [OBOL:automatic] synonym: "lung hilum" EXACT [OBOL:automatic] synonym: "pulmonary hilum" EXACT [FMA:7330] synonym: "pulmonary hilus" EXACT [OBOL:automatic] xref: FMA:7330 xref: SCTID:264017007 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004885 ! implied link automatically realized ! hilum relationship: part_of UBERON:0002048 intersection_of: UBERON:0004885 ! hilum intersection_of: part_of UBERON:0002048 ! lung [Term] id: UBERON:0004887 name: left lung hilus def: "A lung hilus that is part of the left lung." [OBOL:automatic] synonym: "hilum of left lung" EXACT [] synonym: "hilus of left lung" EXACT [OBOL:automatic] synonym: "left lung hilum" EXACT [OBOL:automatic] synonym: "left pulmonary hilum" EXACT [FMA:9751] synonym: "left pulmonary hilus" EXACT [OBOL:automatic] xref: EHDAA:4965 xref: EHDAA2:0000962 xref: EMAPA:17980 xref: FMA:9751 xref: MA:0001781 xref: OG:0000483 xref: SCTID:361983000 is_a: UBERON:0004886 ! implied link automatically realized ! lung hilus relationship: part_of UBERON:0002168 intersection_of: UBERON:0004886 ! lung hilus intersection_of: part_of UBERON:0002168 ! left lung [Term] id: UBERON:0004888 name: right lung hilus def: "A lung hilus that is part of the right lung." [OBOL:automatic] synonym: "hilum of right lung" EXACT [] synonym: "hilus of right lung" EXACT [OBOL:automatic] synonym: "right lung hilum" EXACT [OBOL:automatic] synonym: "right pulmonary hilum" EXACT [FMA:7330] synonym: "right pulmonary hilus" EXACT [OBOL:automatic] xref: EHDAA:4995 xref: EHDAA2:0001756 xref: EMAPA:17996 xref: FMA:7456 xref: MA:0001790 xref: OG:0000482 xref: SCTID:361968005 is_a: UBERON:0004886 ! implied link automatically realized ! lung hilus relationship: part_of UBERON:0002167 intersection_of: UBERON:0004886 ! lung hilus intersection_of: part_of UBERON:0002167 ! right lung [Term] id: UBERON:0004889 name: lobar bronchus vasculature def: "Vasculature that is composed of the tubule structures that carry blood or lymph in the lungs" [LG:0012616] is_a: UBERON:0000102 ! implied link automatically realized ! lung vasculature relationship: part_of UBERON:0002183 intersection_of: UBERON:0002049 ! vasculature intersection_of: part_of UBERON:0002183 ! lobar bronchus [Term] id: UBERON:0004890 name: right lung accessory lobe def: "A specialized lobe of the right lung that extends to the left side of the organism" [LG:0012619] comment: In humans, the right lung typically has 3 lobes (superior, middle, inferior). The lobar fissures are often incomplete, making a connection between two apposed lobes. Conversely, more than the expected number of lobes may be produced by new fissures e.g. the azygous lobe of the lung. The additional lobes are termed 'accessory lobes' -- http://www.gpnotebook.co.uk/simplepage.cfm?ID=1120927803 synonym: "right lung postcaval lobe" EXACT [MA:0000427] xref: EHDAA:4971 xref: EHDAA2:0001731 xref: EMAPA:17981 xref: MA:0000427 xref: OG:0000831 is_a: UBERON:0000101 ! lobe of lung is_a: UBERON:0006518 ! implied link automatically realized ! right lung lobe relationship: part_of UBERON:0002167 ! right lung [Term] id: UBERON:0004891 name: lobar bronchus bronchiole def: "A bronchiole of the lobar bronchus" [OBOL:automatic] xref: EMAPA:19000 xref: EMAPA:19002 xref: EMAPA:19004 xref: EMAPA:19006 xref: EMAPA:19008 is_a: UBERON:0002186 ! implied link automatically realized ! bronchiole relationship: part_of UBERON:0002183 intersection_of: UBERON:0002186 ! bronchiole intersection_of: part_of UBERON:0002183 ! lobar bronchus [Term] id: UBERON:0004892 name: lobar bronchus alveolar system def: "The lobar bronchus alveolar system is where molecules of oxygen and carbon dioxide are passively exchanged, by diffusion, between the gaseous environment and the blood in the lobar bronchus" [LG:0012622] is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000467 ! anatomical system relationship: part_of UBERON:0002183 ! lobar bronchus [Term] id: UBERON:0004893 name: interalveolar septum def: "A the thin septum that separates adjacent pulmonary alveoli, containing connective tissue constituents of the respiratory tissue and the capillary network of the blood supply of the lung." [LG:0012625, Wikipedia:Alveolar_septum] synonym: "alveolar septum" EXACT [UBERON:cjm] synonym: "septal bone" RELATED [BTO:0003149] synonym: "septum interalveolare" RELATED [BTO:0003149] xref: BTO:0003149 xref: MA:0000421 xref: ncithesaurus:Alveolar_Septum is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003037 ! implied link automatically realized ! septum relationship: adjacent_to UBERON:0002299 intersection_of: UBERON:0003037 ! septum intersection_of: adjacent_to UBERON:0002299 ! alveolus of lung relationship: part_of UBERON:0006524 ! alveolar system [Term] id: UBERON:0004894 name: alveolar wall def: "A wall that contains the alveoli" [LG:0012626] synonym: "pulmonary alveolar wall" EXACT [FMA:14117] synonym: "pulmonary interalveolar septum" EXACT [FMA:14117] synonym: "wall of pulmonary alveolus" EXACT [FMA:14117] xref: BTO:0002543 xref: FMA:14117 xref: MA:0002568 xref: ncithesaurus:Alveolar_Wall xref: SCTID:361965008 is_a: UBERON:0000060 ! implied link automatically realized ! anatomical wall is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0002299 intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0002299 ! alveolus of lung [Term] id: UBERON:0004895 name: alveolar smooth muscle def: "Alveolar smooth muscle is a type of non-striated muscle, found within the walls of the alveolus" [LG:0012628] xref: MA:0002759 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004225 ! implied link automatically realized ! respiratory system smooth muscle relationship: part_of UBERON:0002299 intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0002299 ! alveolus of lung [Term] id: UBERON:0004896 name: right lung accessory lobe lobar bronchus def: "The right lung accessory lobe lobar bronchus is the major airway within the right lung accessory lobe that starts at the division of the bronchus on the right side and ends at the point of its own subdivision into tertiary or segmental bronchi" [LG:0012636] xref: EHDAA2:0001736 xref: OG:0000239 is_a: UBERON:0003404 ! implied link automatically realized ! lobar bronchus of right lung relationship: part_of UBERON:0004890 intersection_of: UBERON:0002183 ! lobar bronchus intersection_of: part_of UBERON:0004890 ! right lung accessory lobe [Term] id: UBERON:0004897 name: right lung accessory lobe lobar bronchus mesynchyme def: "The right lung accessory lobe lobar bronchus mesenchyme is a type of tissue made up of loosely-packed mesenchymal cells in the right lung accessory lobe lobar bronchus" [LG:0012640] is_a: UBERON:0004901 ! implied link automatically realized ! right lung lobar bronchus mesynchyme relationship: part_of UBERON:0003404 relationship: part_of UBERON:0004890 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0003404 ! lobar bronchus of right lung intersection_of: part_of UBERON:0004890 ! right lung accessory lobe [Term] id: UBERON:0004898 name: right lung caudal lobe lobar bronchus mesynchyme is_obsolete: true [Term] id: UBERON:0004899 name: right lung cranial lobe lobar bronchus mesynchyme def: "The right lung cranial lobe lobar bronchus mesenchyme is a type of tissue made up of loosely-packed mesenchymal cells in the right lung cranial lobe lobar bronchus" [LG:0012659] is_a: UBERON:0004901 ! implied link automatically realized ! right lung lobar bronchus mesynchyme relationship: part_of UBERON:0002170 relationship: part_of UBERON:0003404 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0002170 ! upper lobe of right lung intersection_of: part_of UBERON:0003404 ! lobar bronchus of right lung [Term] id: UBERON:0004900 name: right lung middle lobe lobar bronchus mesynchyme def: "The right lung middle lobe lobar bronchus mesenchyme is a type of tissue made up of loosely-packed mesenchymal cells in the right lung middle lobe lobar bronchus" [LG:0012672] is_a: UBERON:0004901 ! implied link automatically realized ! right lung lobar bronchus mesynchyme relationship: part_of UBERON:0002174 relationship: part_of UBERON:0003404 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0002174 ! middle lobe of right lung intersection_of: part_of UBERON:0003404 ! lobar bronchus of right lung [Term] id: UBERON:0004901 name: right lung lobar bronchus mesynchyme def: "The right lung lobar bronchus mesenchyme is a type of tissue made up of loosely-packed mesenchymal cells in the right lung lobar bronchus" [LG:0012681] is_a: UBERON:0004884 ! implied link automatically realized ! lobar bronchus mesenchyme is_a: UBERON:0009603 ! implied link automatically realized ! right lung associated mesenchyme relationship: part_of UBERON:0002167 relationship: part_of UBERON:0002183 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0002167 ! right lung intersection_of: part_of UBERON:0002183 ! lobar bronchus [Term] id: UBERON:0004902 name: urogenital sinus epithelium def: "The fetal urogenital sinus (from which the prostate derives) is a simple cylinder of stratified basal epithelium, surrounded by mesenchyme and positioned between the embryonic bladder and pelvic urethra" [PMID:18977204] comment: we follow EHDAA2 in dividing the UGS into epithelium and lumen synonym: "epithelium of urogenital sinus" EXACT [OBOL:automatic] synonym: "UGE" EXACT [PMID:18977204] xref: EHDAA2:0004061 is_a: UBERON:0000483 {source="PMID:18977204"} ! epithelium is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure is_a: UBERON:0009846 ! implied link automatically realized ! embryonic cloacal epithelium relationship: part_of UBERON:0000164 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000164 ! primitive urogenital sinus relationship: develops_from UBERON:0009846 {source="EHDAA2"} ! embryonic cloacal epithelium [Term] id: UBERON:0004903 name: bronchoalveolar duct junction def: "A branch point connecting the respiratory bronchioles to the alveolar ducts[MP]." [MP:0004390] is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0002173 ! alveolar duct relationship: part_of UBERON:0002186 ! bronchiole [Term] id: UBERON:0004904 name: optic nerve def: "A nerve that connects the eye to the brain and carries the impulses formed by the retina to the visual cortex of the brain[BTO]." [BTO:0000966] comment: for the vertebrate-specific structure, see UBERON:0000941 (cranial nerve II) subset: grouping_class synonym: "optic nerve (generic)" EXACT [] xref: BTO:0000966 xref: EHDAA2:0001314 xref: EV:0100351 xref: FBbt:00001956 xref: SCTID:180938001 xref: TADS:0000232 is_a: UBERON:0001785 ! implied link automatically realized ! cranial nerve relationship: continuous_with UBERON:0000955 relationship: continuous_with UBERON:0005388 intersection_of: UBERON:0001021 ! nerve intersection_of: continuous_with UBERON:0000955 ! brain intersection_of: continuous_with UBERON:0005388 ! photoreceptor array relationship: part_of UBERON:0002104 ! visual system [Term] id: UBERON:0004905 name: joint def: "anatomical cluster that connects limbs or skeletal elements." [] subset: grouping_class xref: FBbt:00004645 xref: SCTID:302536002 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0004906 name: ectodermal gut def: "A portion of the gut that is derived from ectoderm." [GO:0007439] is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0004185 ! implied link automatically realized ! endodermal gut relationship: develops_from UBERON:0000924 relationship: part_of UBERON:0001555 intersection_of: UBERON:0000481 ! multi-tissue structure intersection_of: develops_from UBERON:0000924 ! ectoderm intersection_of: part_of UBERON:0001555 ! digestive tract [Term] id: UBERON:0004907 name: lower digestive tract def: "the region of the digestive tract extending from the beginning of the intestines to the anus[GO - gut definition]." [Wikipedia:Alimentary_canal#Upper_gastrointestinal_tract] comment: WP: small intestine, large intestine, anus. Anal canal not part of LGIT according to FMA, but anus is considered part of LGIT according to WP. Duodenum overlaps both U/L subset: uberon_slim synonym: "gut" BROAD [GO:0048565] synonym: "lower gastrointestinal tract" EXACT [] synonym: "lower GI tract" EXACT [] xref: EHDAA2:0000726 xref: FMA:49179 xref: galen:LowerGastrointestinalTract xref: MA:0000917 xref: ncithesaurus:Lower_Gastrointestinal_Tract xref: SCTID:279973004 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004921 ! subdivision of digestive tract relationship: develops_from UBERON:0001046 ! hindgut relationship: part_of UBERON:0005409 ! gastrointestinal system [Term] id: UBERON:0004908 name: upper digestive tract def: "the region of the digestive tract extending from the mouth cavity through pharynx esophagus stomach and duodenum." [Wikipedia:Alimentary_canal#Upper_gastrointestinal_tract] comment: WP: small intestine, large intestine, anus. Anal canal not part of LGIT according to FMA, but anus is considered part of LGIT according to WP. Duodenum overlaps both U/L. In Galen, entire GI tract excludes esophagus subset: uberon_slim synonym: "upper gastrointestinal tract" EXACT [] synonym: "upper GI tract" EXACT [] xref: FMA:49177 xref: galen:UpperGastrointestinalTract xref: ncithesaurus:Upper_Gastrointestinal_Tract xref: SCTID:181244000 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004921 ! subdivision of digestive tract relationship: develops_from UBERON:0001041 ! foregut [Term] id: UBERON:0004909 name: epithelium of gonad def: "An epithelium surrounding a gonad." [OBOL:automatic] comment: Note that after reasoning this should subsume the more specific germinal epithelium classes. We include the fly structure here although it is not clear if the sheath is an epithelium or a multi-tissue structure that includes epithelium as parts synonym: "gonad epithelium" EXACT [OBOL:automatic] synonym: "gonadal epithelium" EXACT [OBOL:automatic] xref: EHDAA:4032 xref: EHDAA:5931 xref: FBbt:00004859 xref: ncithesaurus:Germinal_Epithelium is_a: UBERON:0000483 ! implied link automatically realized ! epithelium is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0000991 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000991 ! gonad [Term] id: UBERON:0004910 name: epithelium of male gonad def: "An epithelium surrounding a testis." [OBOL:automatic] comment: Note that after reasoning this should subsume the more specific germinal epithelium classes. We include the fly structure here although it is not clear if the sheath is an epithelium or a multi-tissue structure that includes epithelium as parts synonym: "testis epithelium" EXACT [OBOL:automatic] synonym: "testis sheath" NARROW SENSU [FBbt:00004955] xref: BTO:0001364 xref: EMAPA:17973 xref: FBbt:00004955 is_a: UBERON:0004909 ! implied link automatically realized ! epithelium of gonad relationship: part_of UBERON:0000473 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000473 ! testis [Term] id: UBERON:0004911 name: epithelium of female gonad def: "An epithelium surrounding an ovary." [OBOL:automatic] comment: Note that after reasoning this should subsume the more specific germinal epithelium classes. We include the fly structure here although it is not clear if the sheath is an epithelium or a multi-tissue structure that includes epithelium as parts synonym: "ovarian epithelium" EXACT [OBOL:automatic] synonym: "ovarian sheath" NARROW SENSU [FBbt:00004896] synonym: "ovary epithelium" EXACT [OBOL:automatic] xref: BTO:0003661 xref: FBbt:00004896 is_a: UBERON:0004909 ! implied link automatically realized ! epithelium of gonad relationship: part_of UBERON:0000992 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000992 ! female gonad [Term] id: UBERON:0004912 name: biliary bud synonym: "hepatic diverticulum" RELATED [EMAPA:16561] xref: EHDAA2:0000171 xref: EMAPA:16561 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4f/Gray1088.png/200px-Gray1088.png xref: OG:0001351 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003914 ! epithelial tube is_a: UBERON:0009497 ! implied link automatically realized ! epithelium of foregut-midgut junction relationship: develops_from UBERON:0004161 {source="EHDAA2-modified"} ! septum transversum relationship: part_of UBERON:0006235 {source="EMAPA"} ! foregut-midgut junction [Term] id: UBERON:0004913 name: hepatopancreatic ampulla def: "A dilation of the duodenal papilla that is the opening of the juncture of the common bile duct and the main pancreatic duct." [Wikipedia:Ampulla_of_Vater] subset: vertebrate_core synonym: "ampulla biliaropancreatica" EXACT [FMA:15076, FMA:TA] synonym: "ampulla of bile duct" EXACT [FMA:15076] synonym: "ampulla of Vater" EXACT [] synonym: "biliaropancreatic ampulla" EXACT [] synonym: "papilla duodeni major" RELATED [ZFA:0005167] synonym: "papilla Vateri" EXACT [ZFA:0005167] synonym: "Vater's ampulla" EXACT [] xref: FMA:15076 xref: GAID:283 xref: galen:AmpullaOfVater xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Biliary_system_new.svg/200px-Biliary_system_new.svg.png xref: MESH:A.03.159.183.079.300.900 xref: ncithesaurus:Ampulla_of_Vater xref: SCTID:362200007 xref: ZFA:0005167 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003928 ! implied link automatically realized ! digestive system duct relationship: part_of UBERON:0001174 relationship: part_of UBERON:0004914 intersection_of: UBERON:0000058 ! duct intersection_of: part_of UBERON:0001174 ! common bile duct intersection_of: part_of UBERON:0004914 ! duodenal papilla [Term] id: UBERON:0004914 name: duodenal papilla def: "." [Wikipedia:Major_duodenal_papilla, Wikipedia:Minor_duodenal_papilla] synonym: "papilla of duodenum" EXACT [] xref: EMAPA:18662 xref: EMAPA:18853 xref: FMA:15953 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/43/Gray1057.png/200px-Gray1057.png xref: SCTID:245389007 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: part_of UBERON:0002114 ! duodenum [Term] id: UBERON:0004915 name: sphincter of hepatopancreatic ampulla def: "muscular valve that controls the flow of digestive juices (bile and pancreatic juice) through the ampulla of Vater into the second part of the duodenum. Relaxed by the hormone Cholecystokinin (CCK) via vasoactive intestinal polypeptide (VIP).[WP]." [Wikipedia:Sphincter_of_Oddi] synonym: "hepatopancreatic ampullary sphincter" EXACT [FMA:15077] synonym: "musculus sphincter ampullae" EXACT [FMA:15077] synonym: "Oddi's sphincter" EXACT [] synonym: "sphincter of ampulla of vater" EXACT [FMA:15077] synonym: "sphincter of Oddi" EXACT [] xref: EMAPA:18663 xref: EMAPA:18854 xref: FMA:15077 xref: GAID:285 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/43/Gray1057.png/200px-Gray1057.png xref: MESH:A.03.159.183.079.300.900.600 xref: ncithesaurus:Sphincter_of_Oddi xref: SCTID:181271000 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004590 ! implied link automatically realized ! sphincter muscle relationship: part_of UBERON:0004913 intersection_of: UBERON:0004590 ! sphincter muscle intersection_of: part_of UBERON:0004913 ! hepatopancreatic ampulla [Term] id: UBERON:0004916 name: anal sphincter def: "A sphincter muscle in the anal part of the perineum." [OBOL:automatic] is_a: UBERON:0004519 ! implied link automatically realized ! muscle of anal triangle is_a: UBERON:0004590 ! implied link automatically realized ! sphincter muscle relationship: part_of UBERON:0001353 intersection_of: UBERON:0004590 ! sphincter muscle intersection_of: part_of UBERON:0001353 ! anal region [Term] id: UBERON:0004917 name: urethral sphincter def: "A sphincter muscle surrounding the urethra." [Wikipedia:Urethral_sphincter] synonym: "sphincter muscle of urethra" EXACT [] synonym: "sphincter of urethra" EXACT [] synonym: "urethral sphincter muscle" EXACT [] xref: MA:0002650 xref: SCTID:277855007 is_a: UBERON:0003829 ! implied link automatically realized ! urethra muscle is_a: UBERON:0004590 ! implied link automatically realized ! sphincter muscle relationship: part_of UBERON:0000057 intersection_of: UBERON:0004590 ! sphincter muscle intersection_of: part_of UBERON:0000057 ! urethra relationship: part_of UBERON:0001556 ! lower urinary tract [Term] id: UBERON:0004918 name: internal urethral sphincter def: "a urethral sphincter muscle which constricts the internal urethral orifice. It is the junction of the urethra with the urinary bladder. The muscle is made of smooth muscle, so therefore it is under involuntary control. It is kept tonically contracted by the sympathetic nervous system and during micturition, is relaxed via the parasympathetic nervous system. This is the primary muscle for preventing the release of urine[WP]." [Wikipedia:Internal_sphincter_muscle_of_urethra] synonym: "internal sphincter muscle of urethra" EXACT [] synonym: "internal sphincter of urethra" EXACT [] synonym: "internal urethral sphincter muscle" EXACT [] synonym: "musculus sphincter supracollicularis" EXACT [FMA:45769, FMA:TA] synonym: "musculus sphincter urethrae internus" EXACT [FMA:45769, FMA:TA] synonym: "preprostatic sphincter" EXACT [FMA:45769] synonym: "sphincter urethrae internus" EXACT [FMA:45769, FMA:TA] synonym: "supracollicular sphincter" EXACT [FMA:45769] xref: FMA:45769 xref: SCTID:277856008 is_a: UBERON:0004590 ! sphincter muscle is_a: UBERON:0004917 ! implied link automatically realized ! urethral sphincter relationship: part_of UBERON:0000057 ! urethra [Term] id: UBERON:0004919 name: external urethral sphincter def: "." [Wikipedia:External_sphincter_muscle_of_female_urethra, Wikipedia:External_sphincter_muscle_of_male_urethra] comment: TODO male/female subclasses synonym: "external sphincter muscle of urethra" EXACT [] synonym: "external sphincter of urethra" EXACT [] synonym: "external urethral sphincter muscle" EXACT [] xref: FMA:85274 is_a: UBERON:0004590 ! sphincter muscle is_a: UBERON:0004917 ! implied link automatically realized ! urethral sphincter relationship: part_of UBERON:0000057 ! urethra [Term] id: UBERON:0004920 name: mesoderm of gonad def: "A mesoderm that is part of a gonad [Obol]." [OBOL:automatic] synonym: "gonad mesoderm" EXACT [OBOL:automatic] synonym: "gonadal mesoderm" EXACT [OBOL:automatic] is_obsolete: true [Term] id: UBERON:0004921 name: subdivision of digestive tract comment: intended to denote both embryonic and adult structures. Note the FMA grouping here is not quite correct. we include pharynx, esophagus here, we may want an additional term for major subdivisions (fore/mid/hind vs upper/lower) synonym: "alimentary system subdivision" EXACT [FMA:71131] synonym: "subdivision of alimentary system" EXACT [FMA:71131] xref: FBbt:00100315 xref: FMA:71131 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004185 ! implied link automatically realized ! endodermal gut relationship: part_of UBERON:0001555 ! digestive tract [Term] id: UBERON:0004922 name: subventricular zone def: "A paired brain structure situated throughout the lateral walls of the lateral ventricles. Along with the subgranular zone of dentate gyrus, subventricular zone serves as a source of neural stem cells in the process of adult neurogenesis. It harbors the largest population of proliferating cells in the adult brain of rodents, monkeys and humans. Neurons generated in SVZ travel to the olfactory bulb via the rostral migratory stream[BTO]. a paired brain structure situated throughout the lateral walls of the lateral ventricles.It has been associated with having four distinct layers of variable thickness and cell density, as well as cellular composition[WP]." [Wikipedia:Subventricular_zone] comment: todo - add layers synonym: "adult subventricular zone" EXACT [MP:0004275] synonym: "brain subventricular zone" EXACT [MA:0000817] synonym: "postnatal subventricular zone" EXACT [MP:0004275] synonym: "subependymal zone" RELATED [MP:0004275] synonym: "subventricular zone of brain" EXACT [] synonym: "SVZ" EXACT [] xref: BTO:0003090 xref: MA:0000817 is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon relationship: develops_from UBERON:0004023 ! ganglionic eminence relationship: part_of UBERON:0001890 {source="GO"} ! forebrain relationship: part_of UBERON:0002285 {source="BTO"} ! lateral ventricle relationship: part_of UBERON:0009953 ! post-embryonic organism [Term] id: UBERON:0004923 name: organ component layer xref: FMA:82485 is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0004924 name: submucosa of pharynx def: "A submucosa that is part of a pharynx [Obol]." [OBOL:automatic] synonym: "pharyngeal submucosa" EXACT [FMA:75144] synonym: "pharynx submucosa" EXACT [OBOL:automatic] xref: FMA:75144 xref: SCTID:19594009 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004777 ! implied link automatically realized ! respiratory system submucosa relationship: part_of UBERON:0001042 intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0001042 ! chordate pharynx [Term] id: UBERON:0004925 name: submucosa of laryngopharynx def: "A submucosa that is part of a hypopharynx [Obol]." [OBOL:automatic] synonym: "hypopharynx submucosa" EXACT [OBOL:automatic] synonym: "laryngeal pharynx submucosa" EXACT [OBOL:automatic] synonym: "laryngopharynx submucosa" EXACT [OBOL:automatic] synonym: "submucosa of hypopharynx" EXACT [OBOL:automatic] synonym: "submucosa of laryngeal pharynx" EXACT [OBOL:automatic] synonym: "tela submucosa (pars laryngea pharyngis)" EXACT [FMA:55072] xref: FMA:55072 xref: SCTID:47496006 is_a: UBERON:0004924 ! implied link automatically realized ! submucosa of pharynx relationship: part_of UBERON:0001051 intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0001051 ! hypopharynx [Term] id: UBERON:0004926 name: submucosa of cystic duct def: "A submucosa that is part of a cystic duct [Obol]." [OBOL:automatic] synonym: "cystic duct submucosa" EXACT [OBOL:automatic] synonym: "cystic ductal submucosa" EXACT [FMA:18013] xref: FMA:18013 is_a: UBERON:0004938 ! implied link automatically realized ! submucosa of biliary tree relationship: part_of UBERON:0001152 intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0001152 ! cystic duct [Term] id: UBERON:0004927 name: submucosa of cecum def: "A submucosa that is part of a cecum [Obol]." [OBOL:automatic] synonym: "caecum submucosa" EXACT [OBOL:automatic] synonym: "cecum submucosa" EXACT [OBOL:automatic] synonym: "intestinum crassum caecum submucosa" EXACT [OBOL:automatic] synonym: "submucosa of caecum" EXACT [OBOL:automatic] synonym: "submucosa of intestinum crassum caecum" EXACT [OBOL:automatic] xref: FMA:14999 is_a: UBERON:0003331 ! implied link automatically realized ! submucosa of colon relationship: part_of UBERON:0001153 intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0001153 ! caecum [Term] id: UBERON:0004928 name: submucosa of appendix def: "A submucosa that is part of an appendix [Obol]." [OBOL:automatic] synonym: "appendiceal submucosa" EXACT [FMA:14992] synonym: "appendix submucosa" EXACT [OBOL:automatic] synonym: "caecal appendix submucosa" EXACT [OBOL:automatic] synonym: "submucosa of caecal appendix" EXACT [OBOL:automatic] synonym: "submucosa of vermiform appendix" EXACT [OBOL:automatic] synonym: "submucosa of vermix" EXACT [OBOL:automatic] synonym: "vermiform appendix submucosa" EXACT [OBOL:automatic] synonym: "vermix submucosa" EXACT [OBOL:automatic] xref: FMA:14992 xref: SCTID:86833001 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004927 ! implied link automatically realized ! submucosa of cecum relationship: part_of UBERON:0001154 intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0001154 ! appendix [Term] id: UBERON:0004929 name: submucosa of ascending colon def: "A submucosa that is part of an ascending colon [Obol]." [OBOL:automatic] synonym: "ascending colon submucosa" EXACT [OBOL:automatic] xref: FMA:15006 is_a: UBERON:0003331 ! implied link automatically realized ! submucosa of colon relationship: part_of UBERON:0001156 intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0001156 ! ascending colon [Term] id: UBERON:0004930 name: submucosa of transverse colon def: "A submucosa that is part of a transverse colon [Obol]." [OBOL:automatic] synonym: "transverse colon submucosa" EXACT [OBOL:automatic] xref: FMA:15013 is_a: UBERON:0003331 ! implied link automatically realized ! submucosa of colon relationship: part_of UBERON:0001157 intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0001157 ! transverse colon [Term] id: UBERON:0004931 name: submucosa of descending colon def: "A submucosa that is part of a descending colon [Obol]." [OBOL:automatic] synonym: "descending colon submucosa" EXACT [OBOL:automatic] xref: FMA:15020 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003331 ! implied link automatically realized ! submucosa of colon relationship: part_of UBERON:0001158 intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0001158 ! descending colon [Term] id: UBERON:0004932 name: submucosa of sigmoid colon def: "A submucosa that is part of a sigmoid colon [Obol]." [OBOL:automatic] synonym: "sigmoid colon submucosa" EXACT [OBOL:automatic] xref: FMA:15027 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003331 ! implied link automatically realized ! submucosa of colon relationship: part_of UBERON:0001159 intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0001159 ! sigmoid colon [Term] id: UBERON:0004933 name: submucosa of fundus of stomach def: "A submucosa that is part of a fundus of stomach [Obol]." [OBOL:automatic] synonym: "fundus gastricus (ventricularis) submucosa" EXACT [OBOL:automatic] synonym: "fundus of stomach submucosa" EXACT [OBOL:automatic] synonym: "stomach fundus submucosa" EXACT [OBOL:automatic] synonym: "submucosa of fundus gastricus (ventricularis)" EXACT [OBOL:automatic] synonym: "submucosa of stomach fundus" EXACT [OBOL:automatic] xref: FMA:17058 is_a: UBERON:0001200 ! implied link automatically realized ! submucosa of stomach relationship: part_of UBERON:0001160 intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0001160 ! fundus of stomach [Term] id: UBERON:0004934 name: submucosa of body of stomach def: "A submucosa that is part of a body of stomach [Obol]." [OBOL:automatic] synonym: "body of stomach submucosa" EXACT [OBOL:automatic] synonym: "corpus gastricum (ventriculare) submucosa" EXACT [OBOL:automatic] synonym: "gastric body submucosa" EXACT [OBOL:automatic] synonym: "stomach body submucosa" EXACT [OBOL:automatic] synonym: "submucosa of corpus gastricum (ventriculare)" EXACT [OBOL:automatic] synonym: "submucosa of gastric body" EXACT [OBOL:automatic] synonym: "submucosa of stomach body" EXACT [OBOL:automatic] xref: FMA:17059 is_a: UBERON:0001200 ! implied link automatically realized ! submucosa of stomach relationship: part_of UBERON:0001161 intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0001161 ! body of stomach [Term] id: UBERON:0004935 name: submucosa of cardia of stomach def: "A submucosa that is part of a cardia of stomach [Obol]." [OBOL:automatic] synonym: "cardia of stomach submucosa" EXACT [OBOL:automatic] synonym: "cardial part of stomach submucosa" EXACT [OBOL:automatic] synonym: "gastric cardia submucosa" EXACT [OBOL:automatic] synonym: "pars cardiaca (gaster) submucosa" EXACT [OBOL:automatic] synonym: "stomach cardiac region submucosa" EXACT [OBOL:automatic] synonym: "submucosa of cardial part of stomach" EXACT [OBOL:automatic] synonym: "submucosa of gastric cardia" EXACT [OBOL:automatic] synonym: "submucosa of pars cardiaca (gaster)" EXACT [OBOL:automatic] synonym: "submucosa of stomach cardiac region" EXACT [OBOL:automatic] xref: FMA:17457 is_a: UBERON:0001200 ! implied link automatically realized ! submucosa of stomach relationship: part_of UBERON:0001162 intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0001162 ! cardia of stomach [Term] id: UBERON:0004936 name: submucosa of pyloric antrum def: "A submucosa that is part of a pyloric antrum [Obol]." [OBOL:automatic] synonym: "antrum of stomach submucosa" EXACT [OBOL:automatic] synonym: "pyloric antrum submucosa" EXACT [OBOL:automatic] synonym: "stomach pyloric antrum submucosa" EXACT [OBOL:automatic] synonym: "submucosa of antrum of stomach" EXACT [OBOL:automatic] synonym: "submucosa of stomach pyloric antrum" EXACT [OBOL:automatic] xref: FMA:17060 is_a: UBERON:0001200 ! implied link automatically realized ! submucosa of stomach relationship: part_of UBERON:0001165 intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0001165 ! pyloric antrum [Term] id: UBERON:0004937 name: submucosa of pylorus def: "A submucosa that is part of a pylorus [Obol]." [OBOL:automatic] synonym: "pyloric part of stomach submucosa" EXACT [OBOL:automatic] synonym: "pylorus submucosa" EXACT [OBOL:automatic] synonym: "stomach pyloric region submucosa" EXACT [OBOL:automatic] synonym: "submucosa of pyloric part of stomach" EXACT [OBOL:automatic] synonym: "submucosa of stomach pyloric region" EXACT [OBOL:automatic] xref: FMA:17462 is_a: UBERON:0001200 ! implied link automatically realized ! submucosa of stomach relationship: part_of UBERON:0001166 intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0001166 ! pylorus [Term] id: UBERON:0004938 name: submucosa of biliary tree def: "A submucosa that is part of a biliary tree [Obol]." [OBOL:automatic] synonym: "biliary tract submucosa" EXACT [OBOL:automatic] synonym: "biliary tree submucosa" EXACT [OBOL:automatic] synonym: "submucosa of biliary tract" EXACT [OBOL:automatic] xref: FMA:18009 is_a: UBERON:0000009 ! implied link automatically realized ! submucosa is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0001173 intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0001173 ! biliary tree [Term] id: UBERON:0004939 name: submucosa of common bile duct def: "A submucosa that is part of a common bile duct [Obol]." [OBOL:automatic] synonym: "common bile duct submucosa" EXACT [OBOL:automatic] synonym: "common bile ductal submucosa" EXACT [FMA:18011] synonym: "ductus choledochus (biliaris) submucosa" EXACT [OBOL:automatic] synonym: "submucosa of ductus choledochus (biliaris)" EXACT [OBOL:automatic] xref: FMA:18011 is_a: UBERON:0004938 ! implied link automatically realized ! submucosa of biliary tree relationship: part_of UBERON:0001174 intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0001174 ! common bile duct [Term] id: UBERON:0004940 name: submucosa of common hepatic duct def: "A submucosa that is part of a common hepatic duct [Obol]." [OBOL:automatic] synonym: "common hepatic duct submucosa" EXACT [OBOL:automatic] synonym: "common hepatic ductal submucosa" EXACT [FMA:18014] synonym: "hepatic duct submucosa" EXACT [OBOL:automatic] synonym: "submucosa of hepatic duct" EXACT [OBOL:automatic] xref: FMA:18014 is_a: UBERON:0004938 ! implied link automatically realized ! submucosa of biliary tree relationship: part_of UBERON:0001175 intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0001175 ! common hepatic duct [Term] id: UBERON:0004941 name: submucosa of right hepatic duct def: "A submucosa that is part of a right hepatic duct [Obol]." [OBOL:automatic] synonym: "right hepatic duct submucosa" EXACT [OBOL:automatic] synonym: "right hepatic ductal submucosa" EXACT [FMA:18015] xref: FMA:18015 is_a: UBERON:0004938 ! implied link automatically realized ! submucosa of biliary tree relationship: part_of UBERON:0001176 intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0001176 ! right hepatic duct [Term] id: UBERON:0004942 name: submucosa of left hepatic duct def: "A submucosa that is part of a left hepatic duct [Obol]." [OBOL:automatic] synonym: "left hepatic duct submucosa" EXACT [OBOL:automatic] synonym: "left hepatic ductal submucosa" EXACT [FMA:18017] xref: FMA:18017 is_a: UBERON:0004938 ! implied link automatically realized ! submucosa of biliary tree relationship: part_of UBERON:0001177 intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0001177 ! left hepatic duct [Term] id: UBERON:0004943 name: submucosa of urinary bladder def: "A submucosa that is part of a urinary bladder [Obol]." [OBOL:automatic] synonym: "bladder submucosa" EXACT [OBOL:automatic] synonym: "submucosa of bladder" EXACT [OBOL:automatic] synonym: "tela submucosa vesicae" EXACT [FMA:15929, FMA:TA] synonym: "urinary bladder submucosa" EXACT [OBOL:automatic] xref: FMA:15929 xref: SCTID:88384001 is_a: UBERON:0000009 ! implied link automatically realized ! submucosa is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0001255 intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0001255 ! urinary bladder [Term] id: UBERON:0004944 name: submucosa of trigone of urinary bladder def: "A submucosa that is part of a trigone of urinary bladder [Obol]." [OBOL:automatic] synonym: "deep trigone submucosa" EXACT [OBOL:automatic] synonym: "Lieutaud ' s trigone submucosa" EXACT [OBOL:automatic] synonym: "submucosa of deep trigone" EXACT [OBOL:automatic] synonym: "submucosa of Lieutaud ' s trigone" EXACT [OBOL:automatic] synonym: "submucosa of trigone of bladder" EXACT [OBOL:automatic] synonym: "submucosa of urinary bladder trigone" EXACT [OBOL:automatic] synonym: "submucosa of vesical trigone" EXACT [OBOL:automatic] synonym: "trigone of bladder submucosa" EXACT [OBOL:automatic] synonym: "trigone of urinary bladder submucosa" EXACT [OBOL:automatic] synonym: "urinary bladder trigone submucosa" EXACT [OBOL:automatic] synonym: "vesical trigone submucosa" EXACT [OBOL:automatic] xref: FMA:17852 is_a: UBERON:0004943 ! implied link automatically realized ! submucosa of urinary bladder relationship: part_of UBERON:0001257 intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0001257 ! trigone of urinary bladder [Term] id: UBERON:0004945 name: submucosa of neck of urinary bladder def: "A submucosa that is part of a neck of urinary bladder [Obol]." [OBOL:automatic] synonym: "bladder neck submucosa" EXACT [OBOL:automatic] synonym: "neck of bladder submucosa" EXACT [OBOL:automatic] synonym: "neck of urinary bladder submucosa" EXACT [OBOL:automatic] synonym: "submucosa of bladder neck" EXACT [OBOL:automatic] synonym: "submucosa of neck of bladder" EXACT [OBOL:automatic] synonym: "submucosa of urinary bladder neck" EXACT [OBOL:automatic] synonym: "submucosa of vesical neck" EXACT [OBOL:automatic] synonym: "urinary bladder neck submucosa" EXACT [OBOL:automatic] synonym: "vesical neck submucosa" EXACT [OBOL:automatic] xref: FMA:17851 is_a: UBERON:0004943 ! implied link automatically realized ! submucosa of urinary bladder relationship: part_of UBERON:0001258 intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0001258 ! neck of urinary bladder [Term] id: UBERON:0004946 name: submucosa of ileum def: "A submucosa that is part of a ileum [Obol]." [OBOL:automatic] synonym: "ileal submucosa" EXACT [FMA:14957] synonym: "ileum submucosa" EXACT [OBOL:automatic] xref: FMA:14957 xref: SCTID:65374006 is_a: UBERON:0001205 ! implied link automatically realized ! submucosa of small intestine relationship: part_of UBERON:0002116 intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0002116 ! ileum [Term] id: UBERON:0004947 name: submucosa of right main bronchus def: "A submucosa that is part of a right main bronchus [Obol]." [OBOL:automatic] synonym: "right bronchus submucosa" EXACT [OBOL:automatic] synonym: "right main bronchial submucosa" EXACT [FMA:13139] synonym: "right main bronchus submucosa" EXACT [OBOL:automatic] synonym: "right principal bronchus submucosa" EXACT [OBOL:automatic] synonym: "submucosa of right bronchus" EXACT [OBOL:automatic] synonym: "submucosa of right principal bronchus" EXACT [OBOL:automatic] xref: FMA:13139 is_a: UBERON:0004949 ! implied link automatically realized ! submucosa of main bronchus relationship: part_of UBERON:0002177 intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0002177 ! right main bronchus [Term] id: UBERON:0004948 name: submucosa of left main bronchus def: "A submucosa that is part of a left main bronchus [Obol]." [OBOL:automatic] synonym: "left bronchus submucosa" EXACT [OBOL:automatic] synonym: "left main bronchial submucosa" EXACT [FMA:13140] synonym: "left main bronchus submucosa" EXACT [OBOL:automatic] synonym: "left principal bronchus submucosa" EXACT [OBOL:automatic] synonym: "submucosa of left bronchus" EXACT [OBOL:automatic] synonym: "submucosa of left principal bronchus" EXACT [OBOL:automatic] xref: FMA:13140 is_a: UBERON:0004949 ! implied link automatically realized ! submucosa of main bronchus relationship: part_of UBERON:0002178 intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0002178 ! left main bronchus [Term] id: UBERON:0004949 name: submucosa of main bronchus def: "A submucosa that is part of a main bronchus [Obol]." [OBOL:automatic] synonym: "bronchus principalis submucosa" EXACT [OBOL:automatic] synonym: "main bronchial submucosa" EXACT [FMA:13118] synonym: "main bronchus submucosa" EXACT [OBOL:automatic] synonym: "primary bronchus submucosa" EXACT [OBOL:automatic] synonym: "principal bronchus submucosa" EXACT [OBOL:automatic] synonym: "submucosa of bronchus principalis" EXACT [OBOL:automatic] synonym: "submucosa of primary bronchus" EXACT [OBOL:automatic] synonym: "submucosa of principal bronchus" EXACT [OBOL:automatic] xref: FMA:13118 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001957 ! implied link automatically realized ! submucosa of bronchus relationship: part_of UBERON:0002182 intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0002182 ! main bronchus [Term] id: UBERON:0004950 name: submucosa of lobar bronchus def: "A submucosa that is part of a lobar bronchus [Obol]." [OBOL:automatic] synonym: "lobar bronchial submucosa" EXACT [FMA:62669] synonym: "lobar bronchus submucosa" EXACT [OBOL:automatic] synonym: "secondary bronchus submucosa" EXACT [OBOL:automatic] synonym: "submucosa of secondary bronchus" EXACT [OBOL:automatic] xref: FMA:62669 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001957 ! implied link automatically realized ! submucosa of bronchus relationship: part_of UBERON:0002183 intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0002183 ! lobar bronchus [Term] id: UBERON:0004951 name: submucosa of segmental bronchus def: "A submucosa that is part of a segmental bronchus [Obol]." [OBOL:automatic] synonym: "segmental bronchial submucosa" EXACT [FMA:62670] synonym: "segmental bronchus submucosa" EXACT [OBOL:automatic] synonym: "submucosa of tertiary bronchus" EXACT [OBOL:automatic] synonym: "tertiary bronchus submucosa" EXACT [OBOL:automatic] xref: FMA:62670 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001957 ! implied link automatically realized ! submucosa of bronchus relationship: part_of UBERON:0002184 intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0002184 ! segmental bronchus [Term] id: UBERON:0004952 name: submucosa of bronchiole def: "A submucosa that is part of a bronchiole [Obol]." [OBOL:automatic] synonym: "bronchiole submucosa" EXACT [OBOL:automatic] synonym: "lobular bronchiole submucosa" EXACT [OBOL:automatic] synonym: "submucosa of lobular bronchiole" EXACT [OBOL:automatic] xref: FMA:62775 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004777 ! implied link automatically realized ! respiratory system submucosa relationship: part_of UBERON:0002186 intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0002186 ! bronchiole [Term] id: UBERON:0004980 name: mucosa of ureter def: "A mucosa that is part of a ureter [Obol]." [OBOL:automatic] synonym: "mucosa of organ of ureter" EXACT [OBOL:automatic] synonym: "mucosal layer of ureter" EXACT [FMA:15894] synonym: "mucous membrane of ureter" EXACT [OBOL:automatic] synonym: "organ mucosa of ureter" EXACT [OBOL:automatic] synonym: "tunica mucosa (ureter)" EXACT [FMA:15894] synonym: "tunica mucosa ureteris" EXACT [FMA:15894, FMA:TA] synonym: "ureter mucosa" EXACT [OBOL:automatic] synonym: "ureter mucosa of organ" EXACT [OBOL:automatic] synonym: "ureter mucous membrane" EXACT [OBOL:automatic] synonym: "ureter organ mucosa" EXACT [OBOL:automatic] synonym: "ureteral mucosa" EXACT [FMA:15894] synonym: "ureteric mucosa" EXACT [FMA:15894] xref: FMA:15894 xref: galen:MucousMembraneOfUreter xref: SCTID:40476001 is_a: UBERON:0000344 ! implied link automatically realized ! mucosa is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0000056 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0000056 ! ureter [Term] id: UBERON:0004982 name: mucosa of epiglottis def: "A mucosa that is part of a epiglottis [Obol]." [OBOL:automatic] synonym: "epiglottis mucosa" EXACT [OBOL:automatic] synonym: "epiglottis mucosa of organ" EXACT [OBOL:automatic] synonym: "epiglottis mucous membrane" EXACT [OBOL:automatic] synonym: "epiglottis organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of organ of epiglottis" EXACT [OBOL:automatic] synonym: "mucous membrane of epiglottis" EXACT [OBOL:automatic] synonym: "organ mucosa of epiglottis" EXACT [OBOL:automatic] xref: FMA:64015 xref: SCTID:156751001 is_a: UBERON:0004987 ! implied link automatically realized ! mucosa of laryngopharynx relationship: part_of UBERON:0000388 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0000388 ! epiglottis [Term] id: UBERON:0004983 name: mucosa of vagina def: "A mucosa that is part of a vagina [Obol]." [OBOL:automatic] synonym: "mucosa of organ of vagina" EXACT [OBOL:automatic] synonym: "mucous membrane of vagina" EXACT [OBOL:automatic] synonym: "organ mucosa of vagina" EXACT [OBOL:automatic] synonym: "tunica mucosa vaginae" EXACT [FMA:19975, FMA:TA] synonym: "vagina mucosa" EXACT [OBOL:automatic] synonym: "vagina mucosa of organ" EXACT [OBOL:automatic] synonym: "vagina mucous membrane" EXACT [OBOL:automatic] synonym: "vagina organ mucosa" EXACT [OBOL:automatic] synonym: "vaginal mucosa" EXACT [FMA:19975] xref: FMA:19975 xref: SCTID:362245006 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000344 ! implied link automatically realized ! mucosa is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0000996 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0000996 ! vagina [Term] id: UBERON:0004984 name: mucosa of seminal vesicle def: "A mucosa that is part of a seminal vesicle [Obol]." [OBOL:automatic] synonym: "mucosa of organ of seminal gland" EXACT [OBOL:automatic] synonym: "mucosa of organ of seminal vesicle" EXACT [OBOL:automatic] synonym: "mucosa of seminal gland" EXACT [OBOL:automatic] synonym: "mucous membrane of seminal gland" EXACT [OBOL:automatic] synonym: "mucous membrane of seminal vesicle" EXACT [OBOL:automatic] synonym: "organ mucosa of seminal gland" EXACT [OBOL:automatic] synonym: "organ mucosa of seminal vesicle" EXACT [OBOL:automatic] synonym: "seminal gland mucosa" EXACT [OBOL:automatic] synonym: "seminal gland mucosa of organ" EXACT [OBOL:automatic] synonym: "seminal gland mucous membrane" EXACT [OBOL:automatic] synonym: "seminal gland organ mucosa" EXACT [OBOL:automatic] synonym: "seminal vesicle mucosa" EXACT [OBOL:automatic] synonym: "seminal vesicle mucosa of organ" EXACT [OBOL:automatic] synonym: "seminal vesicle mucous membrane" EXACT [OBOL:automatic] synonym: "seminal vesicle organ mucosa" EXACT [OBOL:automatic] synonym: "tunica mucosa glandulae vesiculosae" EXACT [FMA:19405, FMA:TA] xref: FMA:19405 xref: SCTID:252260007 is_a: UBERON:0000344 ! implied link automatically realized ! mucosa is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0000998 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0000998 ! seminal vesicle [Term] id: UBERON:0004985 name: mucosa of ejaculatory duct def: "A mucosa that is part of a ejaculatory duct [Obol]." [OBOL:automatic] synonym: "ejaculatory duct mucosa" EXACT [OBOL:automatic] synonym: "ejaculatory duct mucosa of organ" EXACT [OBOL:automatic] synonym: "ejaculatory duct mucous membrane" EXACT [OBOL:automatic] synonym: "ejaculatory duct organ mucosa" EXACT [OBOL:automatic] synonym: "ejaculatory ductal mucosa" EXACT [FMA:19373] synonym: "mucosa of organ of ejaculatory duct" EXACT [OBOL:automatic] synonym: "mucous membrane of ejaculatory duct" EXACT [OBOL:automatic] synonym: "organ mucosa of ejaculatory duct" EXACT [OBOL:automatic] xref: FMA:19373 is_a: UBERON:0000344 ! implied link automatically realized ! mucosa is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0000999 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0000999 ! ejaculatory duct [Term] id: UBERON:0004986 name: mucosa of deferent duct def: "A mucosa that is part of a vas deferens [Obol]." [OBOL:automatic] synonym: "deferent duct mucosa" EXACT [OBOL:automatic] synonym: "deferent duct mucosa of organ" EXACT [OBOL:automatic] synonym: "deferent duct mucous membrane" EXACT [OBOL:automatic] synonym: "deferent duct organ mucosa" EXACT [OBOL:automatic] synonym: "deferent ductal mucosa" EXACT [FMA:19240] synonym: "ductus deferens mucosa" EXACT [OBOL:automatic] synonym: "ductus deferens mucosa of organ" EXACT [OBOL:automatic] synonym: "ductus deferens mucous membrane" EXACT [OBOL:automatic] synonym: "ductus deferens organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of ductus deferens" EXACT [OBOL:automatic] synonym: "mucosa of organ of deferent duct" EXACT [OBOL:automatic] synonym: "mucosa of organ of ductus deferens" EXACT [OBOL:automatic] synonym: "mucosa of organ of sperm duct" EXACT [OBOL:automatic] synonym: "mucosa of organ of vas deferen" EXACT [OBOL:automatic] synonym: "mucosa of organ of vas deferens" EXACT [OBOL:automatic] synonym: "mucosa of sperm duct" EXACT [OBOL:automatic] synonym: "mucosa of vas deferen" EXACT [OBOL:automatic] synonym: "mucosa of vas deferens" EXACT [OBOL:automatic] synonym: "mucous membrane of deferent duct" EXACT [OBOL:automatic] synonym: "mucous membrane of ductus deferens" EXACT [OBOL:automatic] synonym: "mucous membrane of sperm duct" EXACT [OBOL:automatic] synonym: "mucous membrane of vas deferen" EXACT [OBOL:automatic] synonym: "mucous membrane of vas deferens" EXACT [OBOL:automatic] synonym: "organ mucosa of deferent duct" EXACT [OBOL:automatic] synonym: "organ mucosa of ductus deferens" EXACT [OBOL:automatic] synonym: "organ mucosa of sperm duct" EXACT [OBOL:automatic] synonym: "organ mucosa of vas deferen" EXACT [OBOL:automatic] synonym: "organ mucosa of vas deferens" EXACT [OBOL:automatic] synonym: "sperm duct mucosa" EXACT [OBOL:automatic] synonym: "sperm duct mucosa of organ" EXACT [OBOL:automatic] synonym: "sperm duct mucous membrane" EXACT [OBOL:automatic] synonym: "sperm duct organ mucosa" EXACT [OBOL:automatic] synonym: "tunica mucosa (ductus deferens)" EXACT [FMA:19240] synonym: "tunica mucosa ductus deferentis" EXACT [FMA:19240, FMA:TA] synonym: "vas deferen mucosa" EXACT [OBOL:automatic] synonym: "vas deferen mucosa of organ" EXACT [OBOL:automatic] synonym: "vas deferen mucous membrane" EXACT [OBOL:automatic] synonym: "vas deferen organ mucosa" EXACT [OBOL:automatic] synonym: "vas deferens mucosa" EXACT [OBOL:automatic] synonym: "vas deferens mucosa of organ" EXACT [OBOL:automatic] synonym: "vas deferens mucous membrane" EXACT [OBOL:automatic] synonym: "vas deferens organ mucosa" EXACT [OBOL:automatic] xref: FMA:19240 xref: SCTID:299626000 is_a: UBERON:0000344 ! implied link automatically realized ! mucosa is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0001000 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001000 ! vas deferens [Term] id: UBERON:0004987 name: mucosa of laryngopharynx def: "A mucosa that is part of a hypopharynx [Obol]." [OBOL:automatic] synonym: "hypopharynx mucosa" EXACT [OBOL:automatic] synonym: "hypopharynx mucosa of organ" EXACT [OBOL:automatic] synonym: "hypopharynx mucous membrane" EXACT [OBOL:automatic] synonym: "hypopharynx organ mucosa" EXACT [OBOL:automatic] synonym: "laryngeal pharynx mucosa" EXACT [OBOL:automatic] synonym: "laryngeal pharynx mucosa of organ" EXACT [OBOL:automatic] synonym: "laryngeal pharynx mucous membrane" EXACT [OBOL:automatic] synonym: "laryngeal pharynx organ mucosa" EXACT [OBOL:automatic] synonym: "laryngopharynx mucosa" EXACT [OBOL:automatic] synonym: "laryngopharynx mucosa of organ" EXACT [OBOL:automatic] synonym: "laryngopharynx mucous membrane" EXACT [OBOL:automatic] synonym: "laryngopharynx organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of hypopharynx" EXACT [OBOL:automatic] synonym: "mucosa of laryngeal pharynx" EXACT [OBOL:automatic] synonym: "mucosa of organ of hypopharynx" EXACT [OBOL:automatic] synonym: "mucosa of organ of laryngeal pharynx" EXACT [OBOL:automatic] synonym: "mucosa of organ of laryngopharynx" EXACT [OBOL:automatic] synonym: "mucous membrane of hypopharynx" EXACT [OBOL:automatic] synonym: "mucous membrane of laryngeal pharynx" EXACT [OBOL:automatic] synonym: "mucous membrane of laryngopharynx" EXACT [OBOL:automatic] synonym: "organ mucosa of hypopharynx" EXACT [OBOL:automatic] synonym: "organ mucosa of laryngeal pharynx" EXACT [OBOL:automatic] synonym: "organ mucosa of laryngopharynx" EXACT [OBOL:automatic] xref: FMA:55030 xref: SCTID:362126008 is_a: UBERON:0000355 ! implied link automatically realized ! pharyngeal mucosa relationship: part_of UBERON:0001051 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001051 ! hypopharynx [Term] id: UBERON:0004988 name: mucosa of cystic duct def: "A mucosa that is part of a cystic duct [Obol]." [OBOL:automatic] synonym: "cystic duct mucosa" EXACT [OBOL:automatic] synonym: "cystic duct mucosa of organ" EXACT [OBOL:automatic] synonym: "cystic duct mucous membrane" EXACT [OBOL:automatic] synonym: "cystic duct organ mucosa" EXACT [OBOL:automatic] synonym: "cystic ductal mucosa" EXACT [FMA:14690] synonym: "mucosa of organ of cystic duct" EXACT [OBOL:automatic] synonym: "mucous membrane of cystic duct" EXACT [OBOL:automatic] synonym: "organ mucosa of cystic duct" EXACT [OBOL:automatic] xref: FMA:14690 is_a: UBERON:0004999 ! implied link automatically realized ! mucosa of biliary tree relationship: part_of UBERON:0001152 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001152 ! cystic duct [Term] id: UBERON:0004989 name: mucosa of appendix def: "A mucosa that is part of an appendix [Obol]." [OBOL:automatic] synonym: "appendiceal mucous membrane" EXACT [FMA:14991] synonym: "appendix mucosa" EXACT [OBOL:automatic] synonym: "appendix mucosa of organ" EXACT [OBOL:automatic] synonym: "appendix mucous membrane" EXACT [OBOL:automatic] synonym: "appendix organ mucosa" EXACT [OBOL:automatic] synonym: "caecal appendix mucosa" EXACT [OBOL:automatic] synonym: "caecal appendix mucosa of organ" EXACT [OBOL:automatic] synonym: "caecal appendix mucous membrane" EXACT [OBOL:automatic] synonym: "caecal appendix organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of caecal appendix" EXACT [OBOL:automatic] synonym: "mucosa of organ of appendix" EXACT [OBOL:automatic] synonym: "mucosa of organ of caecal appendix" EXACT [OBOL:automatic] synonym: "mucosa of organ of vermiform appendix" EXACT [OBOL:automatic] synonym: "mucosa of organ of vermix" EXACT [OBOL:automatic] synonym: "mucosa of vermiform appendix" EXACT [OBOL:automatic] synonym: "mucosa of vermix" EXACT [OBOL:automatic] synonym: "mucous membrane of appendix" EXACT [OBOL:automatic] synonym: "mucous membrane of caecal appendix" EXACT [OBOL:automatic] synonym: "mucous membrane of vermiform appendix" EXACT [OBOL:automatic] synonym: "mucous membrane of vermix" EXACT [OBOL:automatic] synonym: "organ mucosa of appendix" EXACT [OBOL:automatic] synonym: "organ mucosa of caecal appendix" EXACT [OBOL:automatic] synonym: "organ mucosa of vermiform appendix" EXACT [OBOL:automatic] synonym: "organ mucosa of vermix" EXACT [OBOL:automatic] synonym: "vermiform appendix mucosa" EXACT [OBOL:automatic] synonym: "vermiform appendix mucosa of organ" EXACT [OBOL:automatic] synonym: "vermiform appendix mucous membrane" EXACT [OBOL:automatic] synonym: "vermiform appendix organ mucosa" EXACT [OBOL:automatic] synonym: "vermix mucosa" EXACT [OBOL:automatic] synonym: "vermix mucosa of organ" EXACT [OBOL:automatic] synonym: "vermix mucous membrane" EXACT [OBOL:automatic] synonym: "vermix organ mucosa" EXACT [OBOL:automatic] xref: FMA:14991 xref: SCTID:362155000 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000314 ! implied link automatically realized ! cecum mucosa relationship: part_of UBERON:0001154 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001154 ! appendix [Term] id: UBERON:0004990 name: mucosa of ascending colon def: "A mucosa that is part of an ascending colon [Obol]." [OBOL:automatic] synonym: "ascending colon mucosa" EXACT [OBOL:automatic] synonym: "ascending colon mucosa of organ" EXACT [OBOL:automatic] synonym: "ascending colon mucous membrane" EXACT [OBOL:automatic] synonym: "ascending colon organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of organ of ascending colon" EXACT [OBOL:automatic] synonym: "mucous membrane of ascending colon" EXACT [OBOL:automatic] synonym: "organ mucosa of ascending colon" EXACT [OBOL:automatic] xref: FMA:15005 is_a: UBERON:0000317 ! implied link automatically realized ! colonic mucosa relationship: part_of UBERON:0001156 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001156 ! ascending colon [Term] id: UBERON:0004991 name: mucosa of transverse colon def: "A mucosa that is part of a transverse colon [Obol]." [OBOL:automatic] synonym: "mucosa of organ of transverse colon" EXACT [OBOL:automatic] synonym: "mucous membrane of transverse colon" EXACT [OBOL:automatic] synonym: "organ mucosa of transverse colon" EXACT [OBOL:automatic] synonym: "transverse colon mucosa" EXACT [OBOL:automatic] synonym: "transverse colon mucosa of organ" EXACT [OBOL:automatic] synonym: "transverse colon mucous membrane" EXACT [OBOL:automatic] synonym: "transverse colon organ mucosa" EXACT [OBOL:automatic] xref: FMA:15012 is_a: UBERON:0000317 ! implied link automatically realized ! colonic mucosa relationship: part_of UBERON:0001157 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001157 ! transverse colon [Term] id: UBERON:0004992 name: mucosa of descending colon def: "A mucosa that is part of a descending colon [Obol]." [OBOL:automatic] synonym: "descending colon mucosa" EXACT [OBOL:automatic] synonym: "descending colon mucosa of organ" EXACT [OBOL:automatic] synonym: "descending colon mucous membrane" EXACT [OBOL:automatic] synonym: "descending colon organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of organ of descending colon" EXACT [OBOL:automatic] synonym: "mucous membrane of descending colon" EXACT [OBOL:automatic] synonym: "organ mucosa of descending colon" EXACT [OBOL:automatic] xref: FMA:15019 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000317 ! implied link automatically realized ! colonic mucosa relationship: part_of UBERON:0001158 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001158 ! descending colon [Term] id: UBERON:0004993 name: mucosa of sigmoid colon def: "A mucosa that is part of a sigmoid colon [Obol]." [OBOL:automatic] synonym: "mucosa of organ of sigmoid colon" EXACT [OBOL:automatic] synonym: "mucous membrane of sigmoid colon" EXACT [OBOL:automatic] synonym: "organ mucosa of sigmoid colon" EXACT [OBOL:automatic] synonym: "sigmoid colon mucosa" EXACT [OBOL:automatic] synonym: "sigmoid colon mucosa of organ" EXACT [OBOL:automatic] synonym: "sigmoid colon mucous membrane" EXACT [OBOL:automatic] synonym: "sigmoid colon organ mucosa" EXACT [OBOL:automatic] xref: FMA:15026 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000317 ! implied link automatically realized ! colonic mucosa relationship: part_of UBERON:0001159 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001159 ! sigmoid colon [Term] id: UBERON:0004994 name: mucosa of fundus of stomach def: "A mucosa that is part of a fundus of stomach [Obol]." [OBOL:automatic] synonym: "fundus gastricus (ventricularis) mucosa" EXACT [OBOL:automatic] synonym: "fundus gastricus (ventricularis) mucosa of organ" EXACT [OBOL:automatic] synonym: "fundus gastricus (ventricularis) mucous membrane" EXACT [OBOL:automatic] synonym: "fundus gastricus (ventricularis) organ mucosa" EXACT [OBOL:automatic] synonym: "fundus of stomach mucosa" EXACT [OBOL:automatic] synonym: "fundus of stomach mucosa of organ" EXACT [OBOL:automatic] synonym: "fundus of stomach mucous membrane" EXACT [OBOL:automatic] synonym: "fundus of stomach organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of fundus gastricus (ventricularis)" EXACT [OBOL:automatic] synonym: "mucosa of organ of fundus gastricus (ventricularis)" EXACT [OBOL:automatic] synonym: "mucosa of organ of fundus of stomach" EXACT [OBOL:automatic] synonym: "mucosa of organ of stomach fundus" EXACT [OBOL:automatic] synonym: "mucosa of stomach fundus" EXACT [OBOL:automatic] synonym: "mucous membrane of fundus gastricus (ventricularis)" EXACT [OBOL:automatic] synonym: "mucous membrane of fundus of stomach" EXACT [OBOL:automatic] synonym: "mucous membrane of stomach fundus" EXACT [OBOL:automatic] synonym: "organ mucosa of fundus gastricus (ventricularis)" EXACT [OBOL:automatic] synonym: "organ mucosa of fundus of stomach" EXACT [OBOL:automatic] synonym: "organ mucosa of stomach fundus" EXACT [OBOL:automatic] synonym: "stomach fundus mucosa" EXACT [OBOL:automatic] synonym: "stomach fundus mucosa of organ" EXACT [OBOL:automatic] synonym: "stomach fundus mucous membrane" EXACT [OBOL:automatic] synonym: "stomach fundus organ mucosa" EXACT [OBOL:automatic] xref: FMA:17053 is_a: UBERON:0001199 ! implied link automatically realized ! mucosa of stomach relationship: part_of UBERON:0001160 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001160 ! fundus of stomach [Term] id: UBERON:0004995 name: mucosa of body of stomach def: "A mucosa that is part of a body of stomach [Obol]." [OBOL:automatic] synonym: "body of stomach mucosa" EXACT [OBOL:automatic] synonym: "body of stomach mucosa of organ" EXACT [OBOL:automatic] synonym: "body of stomach mucous membrane" EXACT [OBOL:automatic] synonym: "body of stomach organ mucosa" EXACT [OBOL:automatic] synonym: "corpus gastricum (ventriculare) mucosa" EXACT [OBOL:automatic] synonym: "corpus gastricum (ventriculare) mucosa of organ" EXACT [OBOL:automatic] synonym: "corpus gastricum (ventriculare) mucous membrane" EXACT [OBOL:automatic] synonym: "corpus gastricum (ventriculare) organ mucosa" EXACT [OBOL:automatic] synonym: "gastric body mucosa" EXACT [OBOL:automatic] synonym: "gastric body mucosa of organ" EXACT [OBOL:automatic] synonym: "gastric body mucous membrane" EXACT [OBOL:automatic] synonym: "gastric body organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of corpus gastricum (ventriculare)" EXACT [OBOL:automatic] synonym: "mucosa of gastric body" EXACT [OBOL:automatic] synonym: "mucosa of organ of body of stomach" EXACT [OBOL:automatic] synonym: "mucosa of organ of corpus gastricum (ventriculare)" EXACT [OBOL:automatic] synonym: "mucosa of organ of gastric body" EXACT [OBOL:automatic] synonym: "mucosa of organ of stomach body" EXACT [OBOL:automatic] synonym: "mucosa of stomach body" EXACT [OBOL:automatic] synonym: "mucous membrane of body of stomach" EXACT [OBOL:automatic] synonym: "mucous membrane of corpus gastricum (ventriculare)" EXACT [OBOL:automatic] synonym: "mucous membrane of gastric body" EXACT [OBOL:automatic] synonym: "mucous membrane of stomach body" EXACT [OBOL:automatic] synonym: "organ mucosa of body of stomach" EXACT [OBOL:automatic] synonym: "organ mucosa of corpus gastricum (ventriculare)" EXACT [OBOL:automatic] synonym: "organ mucosa of gastric body" EXACT [OBOL:automatic] synonym: "organ mucosa of stomach body" EXACT [OBOL:automatic] synonym: "stomach body mucosa" EXACT [OBOL:automatic] synonym: "stomach body mucosa of organ" EXACT [OBOL:automatic] synonym: "stomach body mucous membrane" EXACT [OBOL:automatic] synonym: "stomach body organ mucosa" EXACT [OBOL:automatic] xref: FMA:17054 is_a: UBERON:0001199 ! implied link automatically realized ! mucosa of stomach relationship: part_of UBERON:0001161 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001161 ! body of stomach [Term] id: UBERON:0004996 name: mucosa of cardia of stomach def: "A mucosa that is part of a cardia of stomach [Obol]." [OBOL:automatic] synonym: "cardia of stomach mucosa" EXACT [OBOL:automatic] synonym: "cardia of stomach mucosa of organ" EXACT [OBOL:automatic] synonym: "cardia of stomach mucous membrane" EXACT [OBOL:automatic] synonym: "cardia of stomach organ mucosa" EXACT [OBOL:automatic] synonym: "cardial part of stomach mucosa" EXACT [OBOL:automatic] synonym: "cardial part of stomach mucosa of organ" EXACT [OBOL:automatic] synonym: "cardial part of stomach mucous membrane" EXACT [OBOL:automatic] synonym: "cardial part of stomach organ mucosa" EXACT [OBOL:automatic] synonym: "gastric cardia mucosa" EXACT [OBOL:automatic] synonym: "gastric cardia mucosa of organ" EXACT [OBOL:automatic] synonym: "gastric cardia mucous membrane" EXACT [OBOL:automatic] synonym: "gastric cardia organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of cardial part of stomach" EXACT [OBOL:automatic] synonym: "mucosa of gastric cardia" EXACT [OBOL:automatic] synonym: "mucosa of organ of cardia of stomach" EXACT [OBOL:automatic] synonym: "mucosa of organ of cardial part of stomach" EXACT [OBOL:automatic] synonym: "mucosa of organ of gastric cardia" EXACT [OBOL:automatic] synonym: "mucosa of organ of pars cardiaca (gaster)" EXACT [OBOL:automatic] synonym: "mucosa of organ of stomach cardiac region" EXACT [OBOL:automatic] synonym: "mucosa of pars cardiaca (gaster)" EXACT [OBOL:automatic] synonym: "mucosa of stomach cardiac region" EXACT [OBOL:automatic] synonym: "mucous membrane of cardia of stomach" EXACT [OBOL:automatic] synonym: "mucous membrane of cardial part of stomach" EXACT [OBOL:automatic] synonym: "mucous membrane of gastric cardia" EXACT [OBOL:automatic] synonym: "mucous membrane of pars cardiaca (gaster)" EXACT [OBOL:automatic] synonym: "mucous membrane of stomach cardiac region" EXACT [OBOL:automatic] synonym: "organ mucosa of cardia of stomach" EXACT [OBOL:automatic] synonym: "organ mucosa of cardial part of stomach" EXACT [OBOL:automatic] synonym: "organ mucosa of gastric cardia" EXACT [OBOL:automatic] synonym: "organ mucosa of pars cardiaca (gaster)" EXACT [OBOL:automatic] synonym: "organ mucosa of stomach cardiac region" EXACT [OBOL:automatic] synonym: "pars cardiaca (gaster) mucosa" EXACT [OBOL:automatic] synonym: "pars cardiaca (gaster) mucosa of organ" EXACT [OBOL:automatic] synonym: "pars cardiaca (gaster) mucous membrane" EXACT [OBOL:automatic] synonym: "pars cardiaca (gaster) organ mucosa" EXACT [OBOL:automatic] synonym: "stomach cardiac region mucosa" EXACT [OBOL:automatic] synonym: "stomach cardiac region mucosa of organ" EXACT [OBOL:automatic] synonym: "stomach cardiac region mucous membrane" EXACT [OBOL:automatic] synonym: "stomach cardiac region organ mucosa" EXACT [OBOL:automatic] xref: FMA:17456 is_a: UBERON:0001199 ! implied link automatically realized ! mucosa of stomach relationship: part_of UBERON:0001162 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001162 ! cardia of stomach [Term] id: UBERON:0004997 name: mucosa of pyloric antrum def: "A mucosa that is part of a pyloric antrum [Obol]." [OBOL:automatic] synonym: "antrum of stomach mucosa" EXACT [OBOL:automatic] synonym: "antrum of stomach mucosa of organ" EXACT [OBOL:automatic] synonym: "antrum of stomach mucous membrane" EXACT [OBOL:automatic] synonym: "antrum of stomach organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of antrum of stomach" EXACT [OBOL:automatic] synonym: "mucosa of organ of antrum of stomach" EXACT [OBOL:automatic] synonym: "mucosa of organ of pyloric antrum" EXACT [OBOL:automatic] synonym: "mucosa of organ of stomach pyloric antrum" EXACT [OBOL:automatic] synonym: "mucosa of stomach pyloric antrum" EXACT [OBOL:automatic] synonym: "mucous membrane of antrum of stomach" EXACT [OBOL:automatic] synonym: "mucous membrane of pyloric antrum" EXACT [OBOL:automatic] synonym: "mucous membrane of stomach pyloric antrum" EXACT [OBOL:automatic] synonym: "organ mucosa of antrum of stomach" EXACT [OBOL:automatic] synonym: "organ mucosa of pyloric antrum" EXACT [OBOL:automatic] synonym: "organ mucosa of stomach pyloric antrum" EXACT [OBOL:automatic] synonym: "pyloric antrum mucosa" EXACT [OBOL:automatic] synonym: "pyloric antrum mucosa of organ" EXACT [OBOL:automatic] synonym: "pyloric antrum mucous membrane" EXACT [OBOL:automatic] synonym: "pyloric antrum organ mucosa" EXACT [OBOL:automatic] synonym: "stomach pyloric antrum mucosa" EXACT [OBOL:automatic] synonym: "stomach pyloric antrum mucosa of organ" EXACT [OBOL:automatic] synonym: "stomach pyloric antrum mucous membrane" EXACT [OBOL:automatic] synonym: "stomach pyloric antrum organ mucosa" EXACT [OBOL:automatic] xref: FMA:17055 is_a: UBERON:0001199 ! implied link automatically realized ! mucosa of stomach relationship: part_of UBERON:0001165 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001165 ! pyloric antrum [Term] id: UBERON:0004998 name: mucosa of pylorus def: "A mucosa that is part of a pylorus [Obol]." [OBOL:automatic] synonym: "mucosa of organ of pyloric part of stomach" EXACT [OBOL:automatic] synonym: "mucosa of organ of pylorus" EXACT [OBOL:automatic] synonym: "mucosa of organ of stomach pyloric region" EXACT [OBOL:automatic] synonym: "mucosa of pyloric part of stomach" EXACT [OBOL:automatic] synonym: "mucosa of stomach pyloric region" EXACT [OBOL:automatic] synonym: "mucous membrane of pyloric part of stomach" EXACT [OBOL:automatic] synonym: "mucous membrane of pylorus" EXACT [OBOL:automatic] synonym: "mucous membrane of stomach pyloric region" EXACT [OBOL:automatic] synonym: "organ mucosa of pyloric part of stomach" EXACT [OBOL:automatic] synonym: "organ mucosa of pylorus" EXACT [OBOL:automatic] synonym: "organ mucosa of stomach pyloric region" EXACT [OBOL:automatic] synonym: "pyloric part of stomach mucosa" EXACT [OBOL:automatic] synonym: "pyloric part of stomach mucosa of organ" EXACT [OBOL:automatic] synonym: "pyloric part of stomach mucous membrane" EXACT [OBOL:automatic] synonym: "pyloric part of stomach organ mucosa" EXACT [OBOL:automatic] synonym: "pylorus mucosa" EXACT [OBOL:automatic] synonym: "pylorus mucosa of organ" EXACT [OBOL:automatic] synonym: "pylorus mucous membrane" EXACT [OBOL:automatic] synonym: "pylorus organ mucosa" EXACT [OBOL:automatic] synonym: "stomach pyloric region mucosa" EXACT [OBOL:automatic] synonym: "stomach pyloric region mucosa of organ" EXACT [OBOL:automatic] synonym: "stomach pyloric region mucous membrane" EXACT [OBOL:automatic] synonym: "stomach pyloric region organ mucosa" EXACT [OBOL:automatic] xref: FMA:17461 is_a: UBERON:0001199 ! implied link automatically realized ! mucosa of stomach relationship: part_of UBERON:0001166 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001166 ! pylorus [Term] id: UBERON:0004999 name: mucosa of biliary tree def: "A mucosa that is part of a biliary tree [Obol]." [OBOL:automatic] synonym: "biliary tract mucosa" EXACT [OBOL:automatic] synonym: "biliary tract mucosa of organ" EXACT [OBOL:automatic] synonym: "biliary tract mucous membrane" EXACT [OBOL:automatic] synonym: "biliary tract organ mucosa" EXACT [OBOL:automatic] synonym: "biliary tree mucosa" EXACT [OBOL:automatic] synonym: "biliary tree mucosa of organ" EXACT [OBOL:automatic] synonym: "biliary tree mucous membrane" EXACT [OBOL:automatic] synonym: "biliary tree organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of biliary tract" EXACT [OBOL:automatic] synonym: "mucosa of organ of biliary tract" EXACT [OBOL:automatic] synonym: "mucosa of organ of biliary tree" EXACT [OBOL:automatic] synonym: "mucous membrane of biliary tract" EXACT [OBOL:automatic] synonym: "mucous membrane of biliary tree" EXACT [OBOL:automatic] synonym: "organ mucosa of biliary tract" EXACT [OBOL:automatic] synonym: "organ mucosa of biliary tree" EXACT [OBOL:automatic] xref: FMA:14695 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000344 ! implied link automatically realized ! mucosa relationship: part_of UBERON:0001173 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001173 ! biliary tree [Term] id: UBERON:0005000 name: mucosa of common bile duct def: "A mucosa that is part of a common bile duct [Obol]." [OBOL:automatic] synonym: "common bile duct mucosa" EXACT [OBOL:automatic] synonym: "common bile duct mucosa of organ" EXACT [OBOL:automatic] synonym: "common bile duct mucous membrane" EXACT [OBOL:automatic] synonym: "common bile duct organ mucosa" EXACT [OBOL:automatic] synonym: "common bile ductal mucosa" EXACT [FMA:14688] synonym: "ductus choledochus (biliaris) mucosa" EXACT [OBOL:automatic] synonym: "ductus choledochus (biliaris) mucosa of organ" EXACT [OBOL:automatic] synonym: "ductus choledochus (biliaris) mucous membrane" EXACT [OBOL:automatic] synonym: "ductus choledochus (biliaris) organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of ductus choledochus (biliaris)" EXACT [OBOL:automatic] synonym: "mucosa of organ of common bile duct" EXACT [OBOL:automatic] synonym: "mucosa of organ of ductus choledochus (biliaris)" EXACT [OBOL:automatic] synonym: "mucous membrane of common bile duct" EXACT [OBOL:automatic] synonym: "mucous membrane of ductus choledochus (biliaris)" EXACT [OBOL:automatic] synonym: "organ mucosa of common bile duct" EXACT [OBOL:automatic] synonym: "organ mucosa of ductus choledochus (biliaris)" EXACT [OBOL:automatic] xref: FMA:14688 is_a: UBERON:0004999 ! implied link automatically realized ! mucosa of biliary tree relationship: part_of UBERON:0001174 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001174 ! common bile duct [Term] id: UBERON:0005001 name: mucosa of common hepatic duct def: "A mucosa that is part of a common hepatic duct [Obol]." [OBOL:automatic] synonym: "common hepatic duct mucosa" EXACT [OBOL:automatic] synonym: "common hepatic duct mucosa of organ" EXACT [OBOL:automatic] synonym: "common hepatic duct mucous membrane" EXACT [OBOL:automatic] synonym: "common hepatic duct organ mucosa" EXACT [OBOL:automatic] synonym: "common hepatic ductal mucosa" EXACT [FMA:14691] synonym: "hepatic duct mucosa" EXACT [OBOL:automatic] synonym: "hepatic duct mucosa of organ" EXACT [OBOL:automatic] synonym: "hepatic duct mucous membrane" EXACT [OBOL:automatic] synonym: "hepatic duct organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of hepatic duct" EXACT [OBOL:automatic] synonym: "mucosa of organ of common hepatic duct" EXACT [OBOL:automatic] synonym: "mucosa of organ of hepatic duct" EXACT [OBOL:automatic] synonym: "mucous membrane of common hepatic duct" EXACT [OBOL:automatic] synonym: "mucous membrane of hepatic duct" EXACT [OBOL:automatic] synonym: "organ mucosa of common hepatic duct" EXACT [OBOL:automatic] synonym: "organ mucosa of hepatic duct" EXACT [OBOL:automatic] xref: FMA:14691 is_a: UBERON:0004999 ! implied link automatically realized ! mucosa of biliary tree relationship: part_of UBERON:0001175 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001175 ! common hepatic duct [Term] id: UBERON:0005002 name: mucosa of right hepatic duct def: "A mucosa that is part of a right hepatic duct [Obol]." [OBOL:automatic] synonym: "mucosa of organ of right hepatic duct" EXACT [OBOL:automatic] synonym: "mucous membrane of right hepatic duct" EXACT [OBOL:automatic] synonym: "organ mucosa of right hepatic duct" EXACT [OBOL:automatic] synonym: "right hepatic duct mucosa" EXACT [OBOL:automatic] synonym: "right hepatic duct mucosa of organ" EXACT [OBOL:automatic] synonym: "right hepatic duct mucous membrane" EXACT [OBOL:automatic] synonym: "right hepatic duct organ mucosa" EXACT [OBOL:automatic] synonym: "right hepatic ductal mucosa" EXACT [FMA:14692] xref: FMA:14692 is_a: UBERON:0004999 ! implied link automatically realized ! mucosa of biliary tree relationship: part_of UBERON:0001176 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001176 ! right hepatic duct [Term] id: UBERON:0005003 name: mucosa of left hepatic duct def: "A mucosa that is part of a left hepatic duct [Obol]." [OBOL:automatic] synonym: "left hepatic duct mucosa" EXACT [OBOL:automatic] synonym: "left hepatic duct mucosa of organ" EXACT [OBOL:automatic] synonym: "left hepatic duct mucous membrane" EXACT [OBOL:automatic] synonym: "left hepatic duct organ mucosa" EXACT [OBOL:automatic] synonym: "left hepatic ductal mucosa" EXACT [FMA:14693] synonym: "mucosa of organ of left hepatic duct" EXACT [OBOL:automatic] synonym: "mucous membrane of left hepatic duct" EXACT [OBOL:automatic] synonym: "organ mucosa of left hepatic duct" EXACT [OBOL:automatic] xref: FMA:14693 is_a: UBERON:0004999 ! implied link automatically realized ! mucosa of biliary tree relationship: part_of UBERON:0001177 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001177 ! left hepatic duct [Term] id: UBERON:0005004 name: mucosa of right ureter def: "A mucosa that is part of a right ureter [Obol]." [OBOL:automatic] synonym: "mucosa of organ of right ureter" EXACT [OBOL:automatic] synonym: "mucous membrane of right ureter" EXACT [OBOL:automatic] synonym: "organ mucosa of right ureter" EXACT [OBOL:automatic] synonym: "right ureter mucosa" EXACT [OBOL:automatic] synonym: "right ureter mucosa of organ" EXACT [OBOL:automatic] synonym: "right ureter mucous membrane" EXACT [OBOL:automatic] synonym: "right ureter organ mucosa" EXACT [OBOL:automatic] synonym: "right ureteral mucosa" EXACT [FMA:17806] xref: FMA:17806 is_a: UBERON:0004980 ! implied link automatically realized ! mucosa of ureter relationship: part_of UBERON:0001222 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001222 ! right ureter [Term] id: UBERON:0005005 name: mucosa of left ureter def: "A mucosa that is part of a left ureter [Obol]." [OBOL:automatic] synonym: "left ureter mucosa" EXACT [OBOL:automatic] synonym: "left ureter mucosa of organ" EXACT [OBOL:automatic] synonym: "left ureter mucous membrane" EXACT [OBOL:automatic] synonym: "left ureter organ mucosa" EXACT [OBOL:automatic] synonym: "left ureteral mucosa" EXACT [FMA:17807] synonym: "mucosa of organ of left ureter" EXACT [OBOL:automatic] synonym: "mucous membrane of left ureter" EXACT [OBOL:automatic] synonym: "organ mucosa of left ureter" EXACT [OBOL:automatic] xref: FMA:17807 is_a: UBERON:0004980 ! implied link automatically realized ! mucosa of ureter relationship: part_of UBERON:0001223 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001223 ! left ureter [Term] id: UBERON:0005006 name: mucosa of renal pelvis def: "A mucosa that is part of a renal pelvis [Obol]." [OBOL:automatic] synonym: "kidney pelvis mucosa" EXACT [OBOL:automatic] synonym: "kidney pelvis mucosa of organ" EXACT [OBOL:automatic] synonym: "kidney pelvis mucous membrane" EXACT [OBOL:automatic] synonym: "kidney pelvis organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of kidney pelvis" EXACT [OBOL:automatic] synonym: "mucosa of organ of kidney pelvis" EXACT [OBOL:automatic] synonym: "mucosa of organ of pelvis of ureter" EXACT [OBOL:automatic] synonym: "mucosa of organ of renal pelvis" EXACT [OBOL:automatic] synonym: "mucosa of pelvis of ureter" EXACT [OBOL:automatic] synonym: "mucous membrane of kidney pelvis" EXACT [OBOL:automatic] synonym: "mucous membrane of pelvis of ureter" EXACT [OBOL:automatic] synonym: "mucous membrane of renal pelvis" EXACT [OBOL:automatic] synonym: "organ mucosa of kidney pelvis" EXACT [OBOL:automatic] synonym: "organ mucosa of pelvis of ureter" EXACT [OBOL:automatic] synonym: "organ mucosa of renal pelvis" EXACT [OBOL:automatic] synonym: "pelvis of ureter mucosa" EXACT [OBOL:automatic] synonym: "pelvis of ureter mucosa of organ" EXACT [OBOL:automatic] synonym: "pelvis of ureter mucous membrane" EXACT [OBOL:automatic] synonym: "pelvis of ureter organ mucosa" EXACT [OBOL:automatic] synonym: "renal pelvic mucosa" EXACT [FMA:17931] synonym: "renal pelvis mucosa" EXACT [OBOL:automatic] synonym: "renal pelvis mucosa of organ" EXACT [OBOL:automatic] synonym: "renal pelvis mucous membrane" EXACT [OBOL:automatic] synonym: "renal pelvis organ mucosa" EXACT [OBOL:automatic] synonym: "tunica mucosa pelvis renalis" EXACT [FMA:17931, FMA:TA] xref: FMA:17931 xref: SCTID:243482002 is_a: UBERON:0004980 ! implied link automatically realized ! mucosa of ureter relationship: part_of UBERON:0001224 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001224 ! renal pelvis [Term] id: UBERON:0005007 name: mucosa of major calyx def: "A mucosa that is part of a major calyx [Obol]." [OBOL:automatic] synonym: "major calix mucosa" EXACT [OBOL:automatic] synonym: "major calix mucosa of organ" EXACT [OBOL:automatic] synonym: "major calix mucous membrane" EXACT [OBOL:automatic] synonym: "major calix organ mucosa" EXACT [OBOL:automatic] synonym: "major calyx mucosa" EXACT [OBOL:automatic] synonym: "major calyx mucosa of organ" EXACT [OBOL:automatic] synonym: "major calyx mucous membrane" EXACT [OBOL:automatic] synonym: "major calyx organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of major calix" EXACT [OBOL:automatic] synonym: "mucosa of organ of major calix" EXACT [OBOL:automatic] synonym: "mucosa of organ of major calyx" EXACT [OBOL:automatic] synonym: "mucous membrane of major calix" EXACT [OBOL:automatic] synonym: "mucous membrane of major calyx" EXACT [OBOL:automatic] synonym: "organ mucosa of major calix" EXACT [OBOL:automatic] synonym: "organ mucosa of major calyx" EXACT [OBOL:automatic] xref: FMA:17934 is_a: UBERON:0005006 ! implied link automatically realized ! mucosa of renal pelvis relationship: part_of UBERON:0001226 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001226 ! major calyx [Term] id: UBERON:0005008 name: mucosa of minor calyx def: "A mucosa that is part of a minor calyx [Obol]." [OBOL:automatic] synonym: "minor calix mucosa" EXACT [OBOL:automatic] synonym: "minor calix mucosa of organ" EXACT [OBOL:automatic] synonym: "minor calix mucous membrane" EXACT [OBOL:automatic] synonym: "minor calix organ mucosa" EXACT [OBOL:automatic] synonym: "minor calyx mucosa" EXACT [OBOL:automatic] synonym: "minor calyx mucosa of organ" EXACT [OBOL:automatic] synonym: "minor calyx mucous membrane" EXACT [OBOL:automatic] synonym: "minor calyx organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of minor calix" EXACT [OBOL:automatic] synonym: "mucosa of organ of minor calix" EXACT [OBOL:automatic] synonym: "mucosa of organ of minor calyx" EXACT [OBOL:automatic] synonym: "mucous membrane of minor calix" EXACT [OBOL:automatic] synonym: "mucous membrane of minor calyx" EXACT [OBOL:automatic] synonym: "organ mucosa of minor calix" EXACT [OBOL:automatic] synonym: "organ mucosa of minor calyx" EXACT [OBOL:automatic] xref: FMA:17937 is_a: UBERON:0005006 ! implied link automatically realized ! mucosa of renal pelvis relationship: part_of UBERON:0001227 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001227 ! minor calyx [Term] id: UBERON:0005009 name: mucosa of trigone of urinary bladder def: "A mucosa that is part of a trigone of urinary bladder [Obol]." [OBOL:automatic] synonym: "deep trigone mucosa" EXACT [OBOL:automatic] synonym: "deep trigone mucosa of organ" EXACT [OBOL:automatic] synonym: "deep trigone mucous membrane" EXACT [OBOL:automatic] synonym: "deep trigone organ mucosa" EXACT [OBOL:automatic] synonym: "Lieutaud ' s trigone mucosa" EXACT [OBOL:automatic] synonym: "Lieutaud ' s trigone mucosa of organ" EXACT [OBOL:automatic] synonym: "Lieutaud ' s trigone mucous membrane" EXACT [OBOL:automatic] synonym: "Lieutaud ' s trigone organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of deep trigone" EXACT [OBOL:automatic] synonym: "mucosa of Lieutaud ' s trigone" EXACT [OBOL:automatic] synonym: "mucosa of organ of deep trigone" EXACT [OBOL:automatic] synonym: "mucosa of organ of Lieutaud ' s trigone" EXACT [OBOL:automatic] synonym: "mucosa of organ of trigone of bladder" EXACT [OBOL:automatic] synonym: "mucosa of organ of trigone of urinary bladder" EXACT [OBOL:automatic] synonym: "mucosa of organ of urinary bladder trigone" EXACT [OBOL:automatic] synonym: "mucosa of organ of vesical trigone" EXACT [OBOL:automatic] synonym: "mucosa of trigone of bladder" EXACT [OBOL:automatic] synonym: "mucosa of urinary bladder trigone" EXACT [OBOL:automatic] synonym: "mucosa of vesical trigone" EXACT [OBOL:automatic] synonym: "mucous membrane of deep trigone" EXACT [OBOL:automatic] synonym: "mucous membrane of Lieutaud ' s trigone" EXACT [OBOL:automatic] synonym: "mucous membrane of trigone of bladder" EXACT [OBOL:automatic] synonym: "mucous membrane of trigone of urinary bladder" EXACT [OBOL:automatic] synonym: "mucous membrane of urinary bladder trigone" EXACT [OBOL:automatic] synonym: "mucous membrane of vesical trigone" EXACT [OBOL:automatic] synonym: "organ mucosa of deep trigone" EXACT [OBOL:automatic] synonym: "organ mucosa of Lieutaud ' s trigone" EXACT [OBOL:automatic] synonym: "organ mucosa of trigone of bladder" EXACT [OBOL:automatic] synonym: "organ mucosa of trigone of urinary bladder" EXACT [OBOL:automatic] synonym: "organ mucosa of urinary bladder trigone" EXACT [OBOL:automatic] synonym: "organ mucosa of vesical trigone" EXACT [OBOL:automatic] synonym: "trigone of bladder mucosa" EXACT [OBOL:automatic] synonym: "trigone of bladder mucosa of organ" EXACT [OBOL:automatic] synonym: "trigone of bladder mucous membrane" EXACT [OBOL:automatic] synonym: "trigone of bladder organ mucosa" EXACT [OBOL:automatic] synonym: "trigone of urinary bladder mucosa" EXACT [OBOL:automatic] synonym: "trigone of urinary bladder mucosa of organ" EXACT [OBOL:automatic] synonym: "trigone of urinary bladder mucous membrane" EXACT [OBOL:automatic] synonym: "trigone of urinary bladder organ mucosa" EXACT [OBOL:automatic] synonym: "urinary bladder trigone mucosa" EXACT [OBOL:automatic] synonym: "urinary bladder trigone mucosa of organ" EXACT [OBOL:automatic] synonym: "urinary bladder trigone mucous membrane" EXACT [OBOL:automatic] synonym: "urinary bladder trigone organ mucosa" EXACT [OBOL:automatic] synonym: "vesical trigone mucosa" EXACT [OBOL:automatic] synonym: "vesical trigone mucosa of organ" EXACT [OBOL:automatic] synonym: "vesical trigone mucous membrane" EXACT [OBOL:automatic] synonym: "vesical trigone organ mucosa" EXACT [OBOL:automatic] xref: FMA:17847 is_a: UBERON:0001259 ! implied link automatically realized ! mucosa of urinary bladder relationship: part_of UBERON:0001257 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001257 ! trigone of urinary bladder [Term] id: UBERON:0005010 name: mucosa of neck of urinary bladder def: "A mucosa that is part of a neck of urinary bladder [Obol]." [OBOL:automatic] synonym: "bladder neck mucosa" EXACT [OBOL:automatic] synonym: "bladder neck mucosa of organ" EXACT [OBOL:automatic] synonym: "bladder neck mucous membrane" EXACT [OBOL:automatic] synonym: "bladder neck organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of bladder neck" EXACT [OBOL:automatic] synonym: "mucosa of neck of bladder" EXACT [OBOL:automatic] synonym: "mucosa of organ of bladder neck" EXACT [OBOL:automatic] synonym: "mucosa of organ of neck of bladder" EXACT [OBOL:automatic] synonym: "mucosa of organ of neck of urinary bladder" EXACT [OBOL:automatic] synonym: "mucosa of organ of urinary bladder neck" EXACT [OBOL:automatic] synonym: "mucosa of organ of vesical neck" EXACT [OBOL:automatic] synonym: "mucosa of urinary bladder neck" EXACT [OBOL:automatic] synonym: "mucosa of vesical neck" EXACT [OBOL:automatic] synonym: "mucous membrane of bladder neck" EXACT [OBOL:automatic] synonym: "mucous membrane of neck of bladder" EXACT [OBOL:automatic] synonym: "mucous membrane of neck of urinary bladder" EXACT [OBOL:automatic] synonym: "mucous membrane of urinary bladder neck" EXACT [OBOL:automatic] synonym: "mucous membrane of vesical neck" EXACT [OBOL:automatic] synonym: "neck of bladder mucosa" EXACT [OBOL:automatic] synonym: "neck of bladder mucosa of organ" EXACT [OBOL:automatic] synonym: "neck of bladder mucous membrane" EXACT [OBOL:automatic] synonym: "neck of bladder organ mucosa" EXACT [OBOL:automatic] synonym: "neck of urinary bladder mucosa" EXACT [OBOL:automatic] synonym: "neck of urinary bladder mucosa of organ" EXACT [OBOL:automatic] synonym: "neck of urinary bladder mucous membrane" EXACT [OBOL:automatic] synonym: "neck of urinary bladder organ mucosa" EXACT [OBOL:automatic] synonym: "organ mucosa of bladder neck" EXACT [OBOL:automatic] synonym: "organ mucosa of neck of bladder" EXACT [OBOL:automatic] synonym: "organ mucosa of neck of urinary bladder" EXACT [OBOL:automatic] synonym: "organ mucosa of urinary bladder neck" EXACT [OBOL:automatic] synonym: "organ mucosa of vesical neck" EXACT [OBOL:automatic] synonym: "urinary bladder neck mucosa" EXACT [OBOL:automatic] synonym: "urinary bladder neck mucosa of organ" EXACT [OBOL:automatic] synonym: "urinary bladder neck mucous membrane" EXACT [OBOL:automatic] synonym: "vesical neck mucosa" EXACT [OBOL:automatic] synonym: "vesical neck mucosa of organ" EXACT [OBOL:automatic] synonym: "vesical neck mucous membrane" EXACT [OBOL:automatic] synonym: "vesical neck organ mucosa" EXACT [OBOL:automatic] xref: FMA:17846 is_a: UBERON:0001259 ! implied link automatically realized ! mucosa of urinary bladder relationship: part_of UBERON:0001258 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001258 ! neck of urinary bladder [Term] id: UBERON:0005011 name: mucosa of right uterine tube def: "A mucosa that is part of a right uterine tube [Obol]." [OBOL:automatic] synonym: "mucosa of organ of right fallopian tube" EXACT [OBOL:automatic] synonym: "mucosa of organ of right oviduct" EXACT [OBOL:automatic] synonym: "mucosa of organ of right uterine tube" EXACT [OBOL:automatic] synonym: "mucosa of right fallopian tube" EXACT [OBOL:automatic] synonym: "mucosa of right oviduct" EXACT [OBOL:automatic] synonym: "mucous membrane of right fallopian tube" EXACT [OBOL:automatic] synonym: "mucous membrane of right oviduct" EXACT [OBOL:automatic] synonym: "mucous membrane of right uterine tube" EXACT [OBOL:automatic] synonym: "organ mucosa of right fallopian tube" EXACT [OBOL:automatic] synonym: "organ mucosa of right oviduct" EXACT [OBOL:automatic] synonym: "organ mucosa of right uterine tube" EXACT [OBOL:automatic] synonym: "right fallopian tube mucosa" EXACT [OBOL:automatic] synonym: "right fallopian tube mucosa of organ" EXACT [OBOL:automatic] synonym: "right fallopian tube mucous membrane" EXACT [OBOL:automatic] synonym: "right fallopian tube organ mucosa" EXACT [OBOL:automatic] synonym: "right oviduct mucosa" EXACT [OBOL:automatic] synonym: "right oviduct mucosa of organ" EXACT [OBOL:automatic] synonym: "right oviduct mucous membrane" EXACT [OBOL:automatic] synonym: "right oviduct organ mucosa" EXACT [OBOL:automatic] synonym: "right uterine tube mucosa" EXACT [OBOL:automatic] synonym: "right uterine tube mucosa of organ" EXACT [OBOL:automatic] synonym: "right uterine tube mucous membrane" EXACT [OBOL:automatic] synonym: "right uterine tube organ mucosa" EXACT [OBOL:automatic] xref: FMA:18452 is_a: UBERON:0005048 ! implied link automatically realized ! mucosa of uterine tube relationship: part_of UBERON:0001302 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001302 ! right uterine tube [Term] id: UBERON:0005012 name: mucosa of left uterine tube def: "A mucosa that is part of a left uterine tube [Obol]." [OBOL:automatic] synonym: "left fallopian tube mucosa" EXACT [OBOL:automatic] synonym: "left fallopian tube mucosa of organ" EXACT [OBOL:automatic] synonym: "left fallopian tube mucous membrane" EXACT [OBOL:automatic] synonym: "left fallopian tube organ mucosa" EXACT [OBOL:automatic] synonym: "left oviduct mucosa" EXACT [OBOL:automatic] synonym: "left oviduct mucosa of organ" EXACT [OBOL:automatic] synonym: "left oviduct mucous membrane" EXACT [OBOL:automatic] synonym: "left oviduct organ mucosa" EXACT [OBOL:automatic] synonym: "left uterine tube mucosa" EXACT [OBOL:automatic] synonym: "left uterine tube mucosa of organ" EXACT [OBOL:automatic] synonym: "left uterine tube mucous membrane" EXACT [OBOL:automatic] synonym: "left uterine tube organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of left fallopian tube" EXACT [OBOL:automatic] synonym: "mucosa of left oviduct" EXACT [OBOL:automatic] synonym: "mucosa of organ of left fallopian tube" EXACT [OBOL:automatic] synonym: "mucosa of organ of left oviduct" EXACT [OBOL:automatic] synonym: "mucosa of organ of left uterine tube" EXACT [OBOL:automatic] synonym: "mucous membrane of left fallopian tube" EXACT [OBOL:automatic] synonym: "mucous membrane of left oviduct" EXACT [OBOL:automatic] synonym: "mucous membrane of left uterine tube" EXACT [OBOL:automatic] synonym: "organ mucosa of left fallopian tube" EXACT [OBOL:automatic] synonym: "organ mucosa of left oviduct" EXACT [OBOL:automatic] synonym: "organ mucosa of left uterine tube" EXACT [OBOL:automatic] xref: FMA:18453 is_a: UBERON:0005048 ! implied link automatically realized ! mucosa of uterine tube relationship: part_of UBERON:0001303 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001303 ! left uterine tube [Term] id: UBERON:0005013 name: mucosa of male urethra def: "A mucosa that is part of a male urethra [Obol]." [OBOL:automatic] synonym: "male urethra mucosa" EXACT [OBOL:automatic] synonym: "male urethra mucosa of organ" EXACT [OBOL:automatic] synonym: "male urethra mucous membrane" EXACT [OBOL:automatic] synonym: "male urethra organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of organ of male urethra" EXACT [OBOL:automatic] synonym: "mucous membrane of male urethra" EXACT [OBOL:automatic] synonym: "organ mucosa of male urethra" EXACT [OBOL:automatic] xref: FMA:239937 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000344 ! implied link automatically realized ! mucosa is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0001333 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001333 ! male urethra [Term] id: UBERON:0005014 name: mucosa of female urethra def: "A mucosa that is part of a female urethra [Obol]." [OBOL:automatic] synonym: "female urethra mucosa" EXACT [OBOL:automatic] synonym: "female urethra mucosa of organ" EXACT [OBOL:automatic] synonym: "female urethra mucous membrane" EXACT [OBOL:automatic] synonym: "female urethra organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of organ of female urethra" EXACT [OBOL:automatic] synonym: "mucous membrane of female urethra" EXACT [OBOL:automatic] synonym: "organ mucosa of female urethra" EXACT [OBOL:automatic] xref: FMA:239940 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000344 ! implied link automatically realized ! mucosa is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0001334 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001334 ! female urethra [Term] id: UBERON:0005015 name: mucosa of prostatic urethra def: "A mucosa that is part of a prostatic urethra [Obol]." [OBOL:automatic] synonym: "mucosa of organ of prostatic part of urethra" EXACT [OBOL:automatic] synonym: "mucosa of organ of prostatic urethra" EXACT [OBOL:automatic] synonym: "mucosa of prostatic part of urethra" EXACT [OBOL:automatic] synonym: "mucous membrane of prostatic part of urethra" EXACT [OBOL:automatic] synonym: "mucous membrane of prostatic urethra" EXACT [OBOL:automatic] synonym: "organ mucosa of prostatic part of urethra" EXACT [OBOL:automatic] synonym: "organ mucosa of prostatic urethra" EXACT [OBOL:automatic] synonym: "prostatic part of urethra mucosa" EXACT [OBOL:automatic] synonym: "prostatic part of urethra mucosa of organ" EXACT [OBOL:automatic] synonym: "prostatic part of urethra mucous membrane" EXACT [OBOL:automatic] synonym: "prostatic part of urethra organ mucosa" EXACT [OBOL:automatic] synonym: "prostatic urethra mucosa" EXACT [OBOL:automatic] synonym: "prostatic urethra mucosa of organ" EXACT [OBOL:automatic] synonym: "prostatic urethra mucous membrane" EXACT [OBOL:automatic] synonym: "prostatic urethra organ mucosa" EXACT [OBOL:automatic] synonym: "prostatic urethral mucosa" EXACT [FMA:77079] synonym: "tunica mucosa urethrae prosticae" EXACT [FMA:77079, FMA:TA] xref: FMA:77079 is_a: UBERON:0005013 ! implied link automatically realized ! mucosa of male urethra relationship: part_of UBERON:0001335 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001335 ! prostatic urethra [Term] id: UBERON:0005016 name: mucosa of intermediate urethra def: "A mucosa that is part of a membranous urethra [Obol]." [OBOL:automatic] synonym: "intermediate part of urethra mucosa" EXACT [OBOL:automatic] synonym: "intermediate part of urethra mucosa of organ" EXACT [OBOL:automatic] synonym: "intermediate part of urethra mucous membrane" EXACT [OBOL:automatic] synonym: "intermediate part of urethra organ mucosa" EXACT [OBOL:automatic] synonym: "intermediate urethra mucosa" EXACT [OBOL:automatic] synonym: "intermediate urethra mucosa of organ" EXACT [OBOL:automatic] synonym: "intermediate urethra mucous membrane" EXACT [OBOL:automatic] synonym: "intermediate urethra organ mucosa" EXACT [OBOL:automatic] synonym: "intermediate urethral mucosa" EXACT [FMA:77085] synonym: "membranous part of urethra mucosa" EXACT [OBOL:automatic] synonym: "membranous part of urethra mucosa of organ" EXACT [OBOL:automatic] synonym: "membranous part of urethra mucous membrane" EXACT [OBOL:automatic] synonym: "membranous part of urethra organ mucosa" EXACT [OBOL:automatic] synonym: "membranous urethra mucosa" EXACT [OBOL:automatic] synonym: "membranous urethra mucosa of organ" EXACT [OBOL:automatic] synonym: "membranous urethra mucous membrane" EXACT [OBOL:automatic] synonym: "membranous urethra organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of intermediate part of urethra" EXACT [OBOL:automatic] synonym: "mucosa of membranous part of urethra" EXACT [OBOL:automatic] synonym: "mucosa of membranous urethra" EXACT [OBOL:automatic] synonym: "mucosa of organ of intermediate part of urethra" EXACT [OBOL:automatic] synonym: "mucosa of organ of intermediate urethra" EXACT [OBOL:automatic] synonym: "mucosa of organ of membranous part of urethra" EXACT [OBOL:automatic] synonym: "mucosa of organ of membranous urethra" EXACT [OBOL:automatic] synonym: "mucosa of organ of pars membranacea (urethrae)" EXACT [OBOL:automatic] synonym: "mucosa of pars membranacea (urethrae)" EXACT [OBOL:automatic] synonym: "mucous membrane of intermediate part of urethra" EXACT [OBOL:automatic] synonym: "mucous membrane of intermediate urethra" EXACT [OBOL:automatic] synonym: "mucous membrane of membranous part of urethra" EXACT [OBOL:automatic] synonym: "mucous membrane of membranous urethra" EXACT [OBOL:automatic] synonym: "mucous membrane of pars membranacea (urethrae)" EXACT [OBOL:automatic] synonym: "organ mucosa of intermediate part of urethra" EXACT [OBOL:automatic] synonym: "organ mucosa of intermediate urethra" EXACT [OBOL:automatic] synonym: "organ mucosa of membranous part of urethra" EXACT [OBOL:automatic] synonym: "organ mucosa of membranous urethra" EXACT [OBOL:automatic] synonym: "organ mucosa of pars membranacea (urethrae)" EXACT [OBOL:automatic] synonym: "pars membranacea (urethrae) mucosa" EXACT [OBOL:automatic] synonym: "pars membranacea (urethrae) mucosa of organ" EXACT [OBOL:automatic] synonym: "pars membranacea (urethrae) mucous membrane" EXACT [OBOL:automatic] synonym: "pars membranacea (urethrae) organ mucosa" EXACT [OBOL:automatic] xref: FMA:77085 xref: galen:MucousMembraneOfUrethra xref: SCTID:362229009 is_a: UBERON:0005013 ! implied link automatically realized ! mucosa of male urethra relationship: part_of UBERON:0001336 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001336 ! membranous urethra [Term] id: UBERON:0005017 name: mucosa of lacrimal sac def: "A mucosa that is part of a lacrimal sac [Obol]." [OBOL:automatic] synonym: "lacrimal sac mucosa" EXACT [OBOL:automatic] synonym: "lacrimal sac mucosa of organ" EXACT [OBOL:automatic] synonym: "lacrimal sac mucous membrane" EXACT [OBOL:automatic] synonym: "lacrimal sac organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of organ of lacrimal sac" EXACT [OBOL:automatic] synonym: "mucous membrane of lacrimal sac" EXACT [OBOL:automatic] synonym: "organ mucosa of lacrimal sac" EXACT [OBOL:automatic] xref: FMA:72061 is_a: UBERON:0000344 ! implied link automatically realized ! mucosa relationship: part_of UBERON:0001351 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001351 ! lacrimal sac [Term] id: UBERON:0005018 name: mucosa of nasal septum def: "A mucosa that is part of a nasal septum [Obol]." [OBOL:automatic] synonym: "mucosa of organ of nasal septum" EXACT [OBOL:automatic] synonym: "mucous membrane of nasal septum" EXACT [OBOL:automatic] synonym: "nasal septum mucosa" EXACT [OBOL:automatic] synonym: "nasal septum mucosa of organ" EXACT [OBOL:automatic] synonym: "nasal septum mucous membrane" EXACT [OBOL:automatic] synonym: "nasal septum organ mucosa" EXACT [OBOL:automatic] synonym: "organ mucosa of nasal septum" EXACT [OBOL:automatic] xref: FMA:60113 is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0004785 ! implied link automatically realized ! respiratory system mucosa relationship: part_of UBERON:0001706 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001706 ! nasal septum [Term] id: UBERON:0005019 name: mucosa of palate def: "A mucosa that is part of a palate [Obol]." [OBOL:automatic] synonym: "mucosa of oral roof" EXACT [OBOL:automatic] synonym: "mucosa of organ of oral roof" EXACT [OBOL:automatic] synonym: "mucosa of organ of palate" EXACT [OBOL:automatic] synonym: "mucosa of organ of roof of mouth" EXACT [OBOL:automatic] synonym: "mucosa of roof of mouth" EXACT [OBOL:automatic] synonym: "mucous membrane of oral roof" EXACT [OBOL:automatic] synonym: "mucous membrane of palate" EXACT [OBOL:automatic] synonym: "mucous membrane of roof of mouth" EXACT [OBOL:automatic] synonym: "oral roof mucosa" EXACT [OBOL:automatic] synonym: "oral roof mucosa of organ" EXACT [OBOL:automatic] synonym: "oral roof mucous membrane" EXACT [OBOL:automatic] synonym: "oral roof organ mucosa" EXACT [OBOL:automatic] synonym: "organ mucosa of oral roof" EXACT [OBOL:automatic] synonym: "organ mucosa of palate" EXACT [OBOL:automatic] synonym: "organ mucosa of roof of mouth" EXACT [OBOL:automatic] synonym: "palate mucosa" EXACT [OBOL:automatic] synonym: "palate mucosa of organ" EXACT [OBOL:automatic] synonym: "palate mucous membrane" EXACT [OBOL:automatic] synonym: "palate organ mucosa" EXACT [OBOL:automatic] synonym: "roof of mouth mucosa" EXACT [OBOL:automatic] synonym: "roof of mouth mucosa of organ" EXACT [OBOL:automatic] synonym: "roof of mouth mucous membrane" EXACT [OBOL:automatic] synonym: "roof of mouth organ mucosa" EXACT [OBOL:automatic] xref: FMA:59765 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0003729 ! implied link automatically realized ! mouth mucosa relationship: part_of UBERON:0001716 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001716 ! secondary palate [Term] id: UBERON:0005020 name: mucosa of tongue def: "A mucosa that is part of a tongue [Obol]." [OBOL:automatic] synonym: "lingual mucosa" EXACT [FMA:54807] synonym: "mucosa of organ of tongue" EXACT [OBOL:automatic] synonym: "mucous membrane of tongue" EXACT [OBOL:automatic] synonym: "organ mucosa of tongue" EXACT [OBOL:automatic] synonym: "tongue mucosa" EXACT [OBOL:automatic] synonym: "tongue mucosa of organ" EXACT [OBOL:automatic] synonym: "tongue mucous membrane" EXACT [OBOL:automatic] synonym: "tongue organ mucosa" EXACT [OBOL:automatic] synonym: "tunica mucosa linguae" EXACT [FMA:54807, FMA:TA] xref: EFO:0002553 xref: FMA:54807 xref: SCTID:362092002 is_a: UBERON:0003729 ! implied link automatically realized ! mouth mucosa relationship: part_of UBERON:0001723 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001723 ! tongue [Term] id: UBERON:0005021 name: mucosa of sphenoidal sinus def: "A mucosa that is part of a sphenoidal sinus [Obol]." [OBOL:automatic] synonym: "mucosa of organ of sphenoid sinus" EXACT [OBOL:automatic] synonym: "mucosa of organ of sphenoidal sinus" EXACT [OBOL:automatic] synonym: "mucosa of sphenoid sinus" EXACT [OBOL:automatic] synonym: "mucous membrane of sphenoid sinus" EXACT [OBOL:automatic] synonym: "mucous membrane of sphenoidal sinus" EXACT [OBOL:automatic] synonym: "organ mucosa of sphenoid sinus" EXACT [OBOL:automatic] synonym: "organ mucosa of sphenoidal sinus" EXACT [OBOL:automatic] synonym: "sphenoid sinus mucosa" EXACT [OBOL:automatic] synonym: "sphenoid sinus mucosa of organ" EXACT [OBOL:automatic] synonym: "sphenoid sinus mucous membrane" EXACT [OBOL:automatic] synonym: "sphenoid sinus organ mucosa" EXACT [OBOL:automatic] synonym: "sphenoidal sinus mucosa" EXACT [OBOL:automatic] synonym: "sphenoidal sinus mucosa of organ" EXACT [OBOL:automatic] synonym: "sphenoidal sinus mucous membrane" EXACT [OBOL:automatic] synonym: "sphenoidal sinus organ mucosa" EXACT [OBOL:automatic] xref: FMA:59775 xref: SCTID:43774000 is_a: UBERON:0004785 ! implied link automatically realized ! respiratory system mucosa relationship: part_of UBERON:0001724 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001724 ! sphenoidal sinus [Term] id: UBERON:0005022 name: mucosa of nasopharynx def: "A mucosa that is part of a nasopharynx [Obol]." [OBOL:automatic] synonym: "mucosa of nasal part of pharynx" EXACT [OBOL:automatic] synonym: "mucosa of organ of nasal part of pharynx" EXACT [OBOL:automatic] synonym: "mucosa of organ of nasopharynx" EXACT [OBOL:automatic] synonym: "mucosa of organ of rhinopharynx" EXACT [OBOL:automatic] synonym: "mucosa of rhinopharynx" EXACT [OBOL:automatic] synonym: "mucous membrane of nasal part of pharynx" EXACT [OBOL:automatic] synonym: "mucous membrane of nasopharynx" EXACT [OBOL:automatic] synonym: "mucous membrane of rhinopharynx" EXACT [OBOL:automatic] synonym: "nasal part of pharynx mucosa" EXACT [OBOL:automatic] synonym: "nasal part of pharynx mucosa of organ" EXACT [OBOL:automatic] synonym: "nasal part of pharynx mucous membrane" EXACT [OBOL:automatic] synonym: "nasal part of pharynx organ mucosa" EXACT [OBOL:automatic] synonym: "nasopharynx mucosa" EXACT [OBOL:automatic] synonym: "nasopharynx mucosa of organ" EXACT [OBOL:automatic] synonym: "nasopharynx mucous membrane" EXACT [OBOL:automatic] synonym: "nasopharynx organ mucosa" EXACT [OBOL:automatic] synonym: "organ mucosa of nasal part of pharynx" EXACT [OBOL:automatic] synonym: "organ mucosa of nasopharynx" EXACT [OBOL:automatic] synonym: "organ mucosa of rhinopharynx" EXACT [OBOL:automatic] synonym: "rhinopharynx mucosa" EXACT [OBOL:automatic] synonym: "rhinopharynx mucosa of organ" EXACT [OBOL:automatic] synonym: "rhinopharynx mucous membrane" EXACT [OBOL:automatic] synonym: "rhinopharynx organ mucosa" EXACT [OBOL:automatic] xref: FMA:54971 xref: SCTID:361938001 is_a: UBERON:0000355 ! implied link automatically realized ! pharyngeal mucosa relationship: part_of UBERON:0001728 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001728 ! nasopharynx [Term] id: UBERON:0005023 name: mucosa of oropharynx def: "A mucosa that is part of a oropharynx [Obol]." [OBOL:automatic] synonym: "mucosa of oral part of pharynx" EXACT [OBOL:automatic] synonym: "mucosa of organ of oral part of pharynx" EXACT [OBOL:automatic] synonym: "mucosa of organ of oropharynx" EXACT [OBOL:automatic] synonym: "mucous membrane of oral part of pharynx" EXACT [OBOL:automatic] synonym: "mucous membrane of oropharynx" EXACT [OBOL:automatic] synonym: "oral part of pharynx mucosa" EXACT [OBOL:automatic] synonym: "oral part of pharynx mucosa of organ" EXACT [OBOL:automatic] synonym: "oral part of pharynx mucous membrane" EXACT [OBOL:automatic] synonym: "oral part of pharynx organ mucosa" EXACT [OBOL:automatic] synonym: "organ mucosa of oral part of pharynx" EXACT [OBOL:automatic] synonym: "organ mucosa of oropharynx" EXACT [OBOL:automatic] synonym: "oropharynx mucosa" EXACT [OBOL:automatic] synonym: "oropharynx mucosa of organ" EXACT [OBOL:automatic] synonym: "oropharynx mucous membrane" EXACT [OBOL:automatic] synonym: "oropharynx organ mucosa" EXACT [OBOL:automatic] xref: FMA:54933 xref: SCTID:144632009 is_a: UBERON:0000355 ! implied link automatically realized ! pharyngeal mucosa is_a: UBERON:0004786 ! implied link automatically realized ! gastrointestinal system mucosa relationship: part_of UBERON:0001729 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001729 ! oropharynx [Term] id: UBERON:0005024 name: mucosa of soft palate def: "A mucosa that is part of a soft palate [Obol]." [OBOL:automatic] synonym: "mucosa of organ of soft palate" EXACT [OBOL:automatic] synonym: "mucous membrane of soft palate" EXACT [OBOL:automatic] synonym: "organ mucosa of soft palate" EXACT [OBOL:automatic] synonym: "soft palate mucosa" EXACT [OBOL:automatic] synonym: "soft palate mucosa of organ" EXACT [OBOL:automatic] synonym: "soft palate mucous membrane" EXACT [OBOL:automatic] synonym: "soft palate organ mucosa" EXACT [OBOL:automatic] xref: FMA:59784 xref: SCTID:245842003 is_a: UBERON:0003343 ! implied link automatically realized ! mucosa of oral region is_a: UBERON:0005019 ! implied link automatically realized ! mucosa of palate relationship: part_of UBERON:0001733 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001733 ! soft palate [Term] id: UBERON:0005025 name: mucosa of uvula def: "A mucosa that is part of a uvula [Obol]." [OBOL:automatic] synonym: "cerebellum lobule IX mucosa" EXACT [OBOL:automatic] synonym: "cerebellum lobule IX mucosa of organ" EXACT [OBOL:automatic] synonym: "cerebellum lobule IX mucous membrane" EXACT [OBOL:automatic] synonym: "cerebellum lobule IX organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of cerebellum lobule IX" EXACT [OBOL:automatic] synonym: "mucosa of organ of cerebellum lobule IX" EXACT [OBOL:automatic] synonym: "mucosa of organ of uvula" EXACT [OBOL:automatic] synonym: "mucosa of organ of uvula of palate" EXACT [OBOL:automatic] synonym: "mucosa of uvula of palate" EXACT [OBOL:automatic] synonym: "mucous membrane of cerebellum lobule IX" EXACT [OBOL:automatic] synonym: "mucous membrane of uvula" EXACT [OBOL:automatic] synonym: "mucous membrane of uvula of palate" EXACT [OBOL:automatic] synonym: "organ mucosa of cerebellum lobule IX" EXACT [OBOL:automatic] synonym: "organ mucosa of uvula" EXACT [OBOL:automatic] synonym: "organ mucosa of uvula of palate" EXACT [OBOL:automatic] synonym: "uvula mucosa" EXACT [OBOL:automatic] synonym: "uvula mucosa of organ" EXACT [OBOL:automatic] synonym: "uvula mucous membrane" EXACT [OBOL:automatic] synonym: "uvula of palate mucosa" EXACT [OBOL:automatic] synonym: "uvula of palate mucosa of organ" EXACT [OBOL:automatic] synonym: "uvula of palate mucous membrane" EXACT [OBOL:automatic] synonym: "uvula of palate organ mucosa" EXACT [OBOL:automatic] synonym: "uvula organ mucosa" EXACT [OBOL:automatic] xref: FMA:60030 is_a: UBERON:0005024 ! implied link automatically realized ! mucosa of soft palate relationship: part_of UBERON:0001734 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001734 ! uvula [Term] id: UBERON:0005026 name: mucosa of middle ear def: "A mucosa that is part of a middle ear [Obol]." [OBOL:automatic] synonym: "middle ear mucosa" EXACT [OBOL:automatic] synonym: "middle ear mucosa of organ" EXACT [OBOL:automatic] synonym: "middle ear mucous membrane" EXACT [OBOL:automatic] synonym: "middle ear organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of organ of middle ear" EXACT [OBOL:automatic] synonym: "mucosa of tympanic cavity" EXACT [FMA:59663] synonym: "mucous membrane of middle ear" EXACT [OBOL:automatic] synonym: "organ mucosa of middle ear" EXACT [OBOL:automatic] synonym: "tunica mucosa cavitatis tympanicae" EXACT [FMA:59663, FMA:TA] xref: FMA:59663 is_a: UBERON:0000344 ! implied link automatically realized ! mucosa relationship: part_of UBERON:0001756 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001756 ! middle ear [Term] id: UBERON:0005027 name: mucosa of frontal sinus def: "A mucosa that is part of a frontal sinus [Obol]." [OBOL:automatic] synonym: "frontal sinus mucosa" EXACT [OBOL:automatic] synonym: "frontal sinus mucosa of organ" EXACT [OBOL:automatic] synonym: "frontal sinus mucous membrane" EXACT [OBOL:automatic] synonym: "frontal sinus organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of organ of frontal sinus" EXACT [OBOL:automatic] synonym: "mucous membrane of frontal sinus" EXACT [OBOL:automatic] synonym: "organ mucosa of frontal sinus" EXACT [OBOL:automatic] xref: FMA:59774 xref: SCTID:368909005 is_a: UBERON:0004785 ! implied link automatically realized ! respiratory system mucosa relationship: part_of UBERON:0001760 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001760 ! frontal sinus [Term] id: UBERON:0005028 name: mucosa of maxillary sinus def: "A mucosa that is part of a maxillary sinus [Obol]." [OBOL:automatic] synonym: "antrum of highmore mucosa" EXACT [OBOL:automatic] synonym: "antrum of highmore mucosa of organ" EXACT [OBOL:automatic] synonym: "antrum of highmore mucous membrane" EXACT [OBOL:automatic] synonym: "antrum of highmore organ mucosa" EXACT [OBOL:automatic] synonym: "maxillary sinus mucosa" EXACT [OBOL:automatic] synonym: "maxillary sinus mucosa of organ" EXACT [OBOL:automatic] synonym: "maxillary sinus mucous membrane" EXACT [OBOL:automatic] synonym: "maxillary sinus organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of antrum of highmore" EXACT [OBOL:automatic] synonym: "mucosa of organ of antrum of highmore" EXACT [OBOL:automatic] synonym: "mucosa of organ of maxillary sinus" EXACT [OBOL:automatic] synonym: "mucous membrane of antrum of highmore" EXACT [OBOL:automatic] synonym: "mucous membrane of maxillary sinus" EXACT [OBOL:automatic] synonym: "organ mucosa of antrum of highmore" EXACT [OBOL:automatic] synonym: "organ mucosa of maxillary sinus" EXACT [OBOL:automatic] xref: FMA:59773 xref: SCTID:368908002 is_a: UBERON:0004785 ! implied link automatically realized ! respiratory system mucosa relationship: part_of UBERON:0001764 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001764 ! maxillary sinus [Term] id: UBERON:0005029 name: mucosa of lacrimal canaliculus def: "A mucosa that is part of a lacrimal canaliculus [Obol]." [OBOL:automatic] synonym: "lacrimal canalicular mucosa" EXACT [FMA:85366] synonym: "lacrimal canaliculus mucosa" EXACT [OBOL:automatic] synonym: "lacrimal canaliculus mucosa of organ" EXACT [OBOL:automatic] synonym: "lacrimal canaliculus mucous membrane" EXACT [OBOL:automatic] synonym: "lacrimal canaliculus organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of organ of lacrimal canaliculus" EXACT [OBOL:automatic] synonym: "mucous membrane of lacrimal canaliculus" EXACT [OBOL:automatic] synonym: "organ mucosa of lacrimal canaliculus" EXACT [OBOL:automatic] xref: FMA:85366 is_a: UBERON:0000344 ! implied link automatically realized ! mucosa relationship: part_of UBERON:0001770 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001770 ! lacrimal canaliculus [Term] id: UBERON:0005030 name: mucosa of paranasal sinus synonym: "paranasal sinus mucosa" EXACT [OBOL:automatic] xref: FMA:59772 is_a: UBERON:0000344 ! implied link automatically realized ! mucosa relationship: adjacent_to UBERON:0001825 intersection_of: UBERON:0000344 ! mucosa intersection_of: adjacent_to UBERON:0001825 ! paranasal sinus [Term] id: UBERON:0005031 name: mucosa of upper lip def: "A mucosa that is part of a upper lip [Obol]." [OBOL:automatic] synonym: "mucosa of organ of upper lip" EXACT [OBOL:automatic] synonym: "mucous membrane of upper lip" EXACT [OBOL:automatic] synonym: "organ mucosa of upper lip" EXACT [OBOL:automatic] synonym: "upper lip mucosa" EXACT [OBOL:automatic] synonym: "upper lip mucosa of organ" EXACT [OBOL:automatic] synonym: "upper lip mucous membrane" EXACT [OBOL:automatic] synonym: "upper lip organ mucosa" EXACT [OBOL:automatic] xref: FMA:59832 xref: ncithesaurus:Mucosa_of_the_Upper_Lip xref: SCTID:362088009 is_a: UBERON:0003729 ! implied link automatically realized ! mouth mucosa relationship: part_of UBERON:0001834 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001834 ! upper lip [Term] id: UBERON:0005032 name: mucosa of lower lip def: "A mucosa that is part of a lower lip [Obol]." [OBOL:automatic] synonym: "lower lip mucosa" EXACT [OBOL:automatic] synonym: "lower lip mucosa of organ" EXACT [OBOL:automatic] synonym: "lower lip mucous membrane" EXACT [OBOL:automatic] synonym: "lower lip organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of organ of lower lip" EXACT [OBOL:automatic] synonym: "mucous membrane of lower lip" EXACT [OBOL:automatic] synonym: "organ mucosa of lower lip" EXACT [OBOL:automatic] xref: FMA:59833 xref: ncithesaurus:Mucosa_of_the_Lower_Lip xref: SCTID:362089001 is_a: UBERON:0003729 ! implied link automatically realized ! mouth mucosa relationship: part_of UBERON:0001835 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001835 ! lower lip [Term] id: UBERON:0005033 name: mucosa of gallbladder def: "A mucosa that is part of a gallbladder [Obol]." [OBOL:automatic] synonym: "gall bladder mucosa" EXACT [OBOL:automatic] synonym: "gall bladder mucosa of organ" EXACT [OBOL:automatic] synonym: "gall bladder mucous membrane" EXACT [OBOL:automatic] synonym: "gall bladder organ mucosa" EXACT [OBOL:automatic] synonym: "gallbladder mucosa" EXACT [OBOL:automatic] synonym: "gallbladder mucosa of organ" EXACT [OBOL:automatic] synonym: "gallbladder mucous membrane" EXACT [OBOL:automatic] synonym: "gallbladder organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of gall bladder" EXACT [OBOL:automatic] synonym: "mucosa of organ of gall bladder" EXACT [OBOL:automatic] synonym: "mucosa of organ of gallbladder" EXACT [OBOL:automatic] synonym: "mucous membrane of gall bladder" EXACT [OBOL:automatic] synonym: "mucous membrane of gallbladder" EXACT [OBOL:automatic] synonym: "organ mucosa of gall bladder" EXACT [OBOL:automatic] synonym: "organ mucosa of gallbladder" EXACT [OBOL:automatic] synonym: "tunica mucosa (vesica biliaris)" EXACT [FMA:14662] synonym: "tunica mucosa vesicae biliaris" EXACT [FMA:14662, FMA:TA] xref: FMA:14662 xref: SCTID:362196002 is_a: UBERON:0004999 ! implied link automatically realized ! mucosa of biliary tree relationship: part_of UBERON:0002110 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0002110 ! gallbladder [Term] id: UBERON:0005034 name: mucosa of right main bronchus def: "A mucosa that is part of a right main bronchus [Obol]." [OBOL:automatic] synonym: "mucosa of organ of right bronchus" EXACT [OBOL:automatic] synonym: "mucosa of organ of right main bronchus" EXACT [OBOL:automatic] synonym: "mucosa of organ of right principal bronchus" EXACT [OBOL:automatic] synonym: "mucosa of right bronchus" EXACT [OBOL:automatic] synonym: "mucosa of right principal bronchus" EXACT [OBOL:automatic] synonym: "mucous membrane of right bronchus" EXACT [OBOL:automatic] synonym: "mucous membrane of right main bronchus" EXACT [OBOL:automatic] synonym: "mucous membrane of right principal bronchus" EXACT [OBOL:automatic] synonym: "organ mucosa of right bronchus" EXACT [OBOL:automatic] synonym: "organ mucosa of right main bronchus" EXACT [OBOL:automatic] synonym: "organ mucosa of right principal bronchus" EXACT [OBOL:automatic] synonym: "right bronchus mucosa" EXACT [OBOL:automatic] synonym: "right bronchus mucosa of organ" EXACT [OBOL:automatic] synonym: "right bronchus mucous membrane" EXACT [OBOL:automatic] synonym: "right bronchus organ mucosa" EXACT [OBOL:automatic] synonym: "right main bronchial mucosa" EXACT [FMA:13137] synonym: "right main bronchus mucosa" EXACT [OBOL:automatic] synonym: "right main bronchus mucosa of organ" EXACT [OBOL:automatic] synonym: "right main bronchus mucous membrane" EXACT [OBOL:automatic] synonym: "right main bronchus organ mucosa" EXACT [OBOL:automatic] synonym: "right principal bronchus mucosa" EXACT [OBOL:automatic] synonym: "right principal bronchus mucosa of organ" EXACT [OBOL:automatic] synonym: "right principal bronchus mucous membrane" EXACT [OBOL:automatic] synonym: "right principal bronchus organ mucosa" EXACT [OBOL:automatic] xref: FMA:13137 is_a: UBERON:0005036 ! implied link automatically realized ! mucosa of main bronchus relationship: part_of UBERON:0002177 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0002177 ! right main bronchus [Term] id: UBERON:0005035 name: mucosa of left main bronchus def: "A mucosa that is part of a left main bronchus [Obol]." [OBOL:automatic] synonym: "left bronchus mucosa" EXACT [OBOL:automatic] synonym: "left bronchus mucosa of organ" EXACT [OBOL:automatic] synonym: "left bronchus mucous membrane" EXACT [OBOL:automatic] synonym: "left bronchus organ mucosa" EXACT [OBOL:automatic] synonym: "left main bronchial mucosa" EXACT [FMA:13138] synonym: "left main bronchus mucosa" EXACT [OBOL:automatic] synonym: "left main bronchus mucosa of organ" EXACT [OBOL:automatic] synonym: "left main bronchus mucous membrane" EXACT [OBOL:automatic] synonym: "left main bronchus organ mucosa" EXACT [OBOL:automatic] synonym: "left principal bronchus mucosa" EXACT [OBOL:automatic] synonym: "left principal bronchus mucosa of organ" EXACT [OBOL:automatic] synonym: "left principal bronchus mucous membrane" EXACT [OBOL:automatic] synonym: "left principal bronchus organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of left bronchus" EXACT [OBOL:automatic] synonym: "mucosa of left principal bronchus" EXACT [OBOL:automatic] synonym: "mucosa of organ of left bronchus" EXACT [OBOL:automatic] synonym: "mucosa of organ of left main bronchus" EXACT [OBOL:automatic] synonym: "mucosa of organ of left principal bronchus" EXACT [OBOL:automatic] synonym: "mucous membrane of left bronchus" EXACT [OBOL:automatic] synonym: "mucous membrane of left main bronchus" EXACT [OBOL:automatic] synonym: "mucous membrane of left principal bronchus" EXACT [OBOL:automatic] synonym: "organ mucosa of left bronchus" EXACT [OBOL:automatic] synonym: "organ mucosa of left main bronchus" EXACT [OBOL:automatic] synonym: "organ mucosa of left principal bronchus" EXACT [OBOL:automatic] xref: FMA:13138 is_a: UBERON:0005036 ! implied link automatically realized ! mucosa of main bronchus relationship: part_of UBERON:0002178 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0002178 ! left main bronchus [Term] id: UBERON:0005036 name: mucosa of main bronchus def: "A mucosa that is part of a main bronchus [Obol]." [OBOL:automatic] synonym: "bronchus principalis mucosa" EXACT [OBOL:automatic] synonym: "bronchus principalis mucosa of organ" EXACT [OBOL:automatic] synonym: "bronchus principalis mucous membrane" EXACT [OBOL:automatic] synonym: "bronchus principalis organ mucosa" EXACT [OBOL:automatic] synonym: "main bronchial mucosa" EXACT [FMA:13115] synonym: "main bronchus mucosa" EXACT [OBOL:automatic] synonym: "main bronchus mucosa of organ" EXACT [OBOL:automatic] synonym: "main bronchus mucous membrane" EXACT [OBOL:automatic] synonym: "main bronchus organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of bronchus principalis" EXACT [OBOL:automatic] synonym: "mucosa of organ of bronchus principalis" EXACT [OBOL:automatic] synonym: "mucosa of organ of main bronchus" EXACT [OBOL:automatic] synonym: "mucosa of organ of primary bronchus" EXACT [OBOL:automatic] synonym: "mucosa of organ of principal bronchus" EXACT [OBOL:automatic] synonym: "mucosa of primary bronchus" EXACT [OBOL:automatic] synonym: "mucosa of principal bronchus" EXACT [OBOL:automatic] synonym: "mucous membrane of bronchus principalis" EXACT [OBOL:automatic] synonym: "mucous membrane of main bronchus" EXACT [OBOL:automatic] synonym: "mucous membrane of primary bronchus" EXACT [OBOL:automatic] synonym: "mucous membrane of principal bronchus" EXACT [OBOL:automatic] synonym: "organ mucosa of bronchus principalis" EXACT [OBOL:automatic] synonym: "organ mucosa of main bronchus" EXACT [OBOL:automatic] synonym: "organ mucosa of primary bronchus" EXACT [OBOL:automatic] synonym: "organ mucosa of principal bronchus" EXACT [OBOL:automatic] synonym: "primary bronchus mucosa" EXACT [OBOL:automatic] synonym: "primary bronchus mucosa of organ" EXACT [OBOL:automatic] synonym: "primary bronchus mucous membrane" EXACT [OBOL:automatic] synonym: "primary bronchus organ mucosa" EXACT [OBOL:automatic] synonym: "principal bronchus mucosa" EXACT [OBOL:automatic] synonym: "principal bronchus mucosa of organ" EXACT [OBOL:automatic] synonym: "principal bronchus mucous membrane" EXACT [OBOL:automatic] synonym: "principal bronchus organ mucosa" EXACT [OBOL:automatic] xref: FMA:13115 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000410 ! implied link automatically realized ! bronchial mucosa relationship: part_of UBERON:0002182 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0002182 ! main bronchus [Term] id: UBERON:0005037 name: mucosa of lobar bronchus def: "A mucosa that is part of a lobar bronchus [Obol]." [OBOL:automatic] synonym: "lobar bronchial mucosa" EXACT [FMA:62668] synonym: "lobar bronchus mucosa" EXACT [OBOL:automatic] synonym: "lobar bronchus mucosa of organ" EXACT [OBOL:automatic] synonym: "lobar bronchus mucous membrane" EXACT [OBOL:automatic] synonym: "lobar bronchus organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of organ of lobar bronchus" EXACT [OBOL:automatic] synonym: "mucosa of organ of secondary bronchus" EXACT [OBOL:automatic] synonym: "mucosa of secondary bronchus" EXACT [OBOL:automatic] synonym: "mucous membrane of lobar bronchus" EXACT [OBOL:automatic] synonym: "mucous membrane of secondary bronchus" EXACT [OBOL:automatic] synonym: "organ mucosa of lobar bronchus" EXACT [OBOL:automatic] synonym: "organ mucosa of secondary bronchus" EXACT [OBOL:automatic] synonym: "secondary bronchus mucosa" EXACT [OBOL:automatic] synonym: "secondary bronchus mucosa of organ" EXACT [OBOL:automatic] synonym: "secondary bronchus mucous membrane" EXACT [OBOL:automatic] synonym: "secondary bronchus organ mucosa" EXACT [OBOL:automatic] xref: FMA:62668 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000410 ! implied link automatically realized ! bronchial mucosa relationship: part_of UBERON:0002183 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0002183 ! lobar bronchus [Term] id: UBERON:0005038 name: mucosa of segmental bronchus def: "A mucosa that is part of a segmental bronchus [Obol]." [OBOL:automatic] synonym: "mucosa of organ of segmental bronchus" EXACT [OBOL:automatic] synonym: "mucosa of organ of tertiary bronchus" EXACT [OBOL:automatic] synonym: "mucosa of tertiary bronchus" EXACT [OBOL:automatic] synonym: "mucous membrane of segmental bronchus" EXACT [OBOL:automatic] synonym: "mucous membrane of tertiary bronchus" EXACT [OBOL:automatic] synonym: "organ mucosa of segmental bronchus" EXACT [OBOL:automatic] synonym: "organ mucosa of tertiary bronchus" EXACT [OBOL:automatic] synonym: "segmental bronchial mucosa" EXACT [FMA:62666] synonym: "segmental bronchus mucosa" EXACT [OBOL:automatic] synonym: "segmental bronchus mucosa of organ" EXACT [OBOL:automatic] synonym: "segmental bronchus mucous membrane" EXACT [OBOL:automatic] synonym: "segmental bronchus organ mucosa" EXACT [OBOL:automatic] synonym: "tertiary bronchus mucosa" EXACT [OBOL:automatic] synonym: "tertiary bronchus mucosa of organ" EXACT [OBOL:automatic] synonym: "tertiary bronchus mucous membrane" EXACT [OBOL:automatic] synonym: "tertiary bronchus organ mucosa" EXACT [OBOL:automatic] xref: FMA:62666 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000410 ! implied link automatically realized ! bronchial mucosa relationship: part_of UBERON:0002184 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0002184 ! segmental bronchus [Term] id: UBERON:0005039 name: mucosa of bronchiole def: "A mucosa that is part of a bronchiole [Obol]." [OBOL:automatic] synonym: "bronchiole mucosa" EXACT [OBOL:automatic] synonym: "bronchiole mucosa of organ" EXACT [OBOL:automatic] synonym: "bronchiole mucous membrane" EXACT [OBOL:automatic] synonym: "bronchiole organ mucosa" EXACT [OBOL:automatic] synonym: "lobular bronchiole mucosa" EXACT [OBOL:automatic] synonym: "lobular bronchiole mucosa of organ" EXACT [OBOL:automatic] synonym: "lobular bronchiole mucous membrane" EXACT [OBOL:automatic] synonym: "lobular bronchiole organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of lobular bronchiole" EXACT [OBOL:automatic] synonym: "mucosa of organ of bronchiole" EXACT [OBOL:automatic] synonym: "mucosa of organ of lobular bronchiole" EXACT [OBOL:automatic] synonym: "mucous membrane of bronchiole" EXACT [OBOL:automatic] synonym: "mucous membrane of lobular bronchiole" EXACT [OBOL:automatic] synonym: "organ mucosa of bronchiole" EXACT [OBOL:automatic] synonym: "organ mucosa of lobular bronchiole" EXACT [OBOL:automatic] xref: FMA:263230 xref: FMA:62774 xref: SCTID:10887006 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004785 ! implied link automatically realized ! respiratory system mucosa relationship: part_of UBERON:0002186 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0002186 ! bronchiole [Term] id: UBERON:0005040 name: mucosa of terminal bronchiole def: "A mucosa that is part of a terminal bronchiole [Obol]." [OBOL:automatic] synonym: "bronchiolus terminalis mucosa" EXACT [OBOL:automatic] synonym: "bronchiolus terminalis mucosa of organ" EXACT [OBOL:automatic] synonym: "bronchiolus terminalis mucous membrane" EXACT [OBOL:automatic] synonym: "bronchiolus terminalis organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of bronchiolus terminalis" EXACT [OBOL:automatic] synonym: "mucosa of organ of bronchiolus terminalis" EXACT [OBOL:automatic] synonym: "mucosa of organ of terminal bronchiole" EXACT [OBOL:automatic] synonym: "mucous membrane of bronchiolus terminalis" EXACT [OBOL:automatic] synonym: "mucous membrane of terminal bronchiole" EXACT [OBOL:automatic] synonym: "organ mucosa of bronchiolus terminalis" EXACT [OBOL:automatic] synonym: "organ mucosa of terminal bronchiole" EXACT [OBOL:automatic] synonym: "terminal bronchiole mucosa" EXACT [OBOL:automatic] synonym: "terminal bronchiole mucosa of organ" EXACT [OBOL:automatic] synonym: "terminal bronchiole mucous membrane" EXACT [OBOL:automatic] synonym: "terminal bronchiole organ mucosa" EXACT [OBOL:automatic] xref: FMA:263232 is_a: UBERON:0005039 ! implied link automatically realized ! mucosa of bronchiole relationship: part_of UBERON:0002187 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0002187 ! terminal bronchiole [Term] id: UBERON:0005041 name: mucosa of respiratory bronchiole def: "A mucosa that is part of a respiratory bronchiole [Obol]." [OBOL:automatic] synonym: "bronchiolus respiratorius mucosa" EXACT [OBOL:automatic] synonym: "bronchiolus respiratorius mucosa of organ" EXACT [OBOL:automatic] synonym: "bronchiolus respiratorius mucous membrane" EXACT [OBOL:automatic] synonym: "bronchiolus respiratorius organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of bronchiolus respiratorius" EXACT [OBOL:automatic] synonym: "mucosa of organ of bronchiolus respiratorius" EXACT [OBOL:automatic] synonym: "mucosa of organ of respiratory bronchiole" EXACT [OBOL:automatic] synonym: "mucous membrane of bronchiolus respiratorius" EXACT [OBOL:automatic] synonym: "mucous membrane of respiratory bronchiole" EXACT [OBOL:automatic] synonym: "organ mucosa of bronchiolus respiratorius" EXACT [OBOL:automatic] synonym: "organ mucosa of respiratory bronchiole" EXACT [OBOL:automatic] synonym: "respiratory bronchiole mucosa" EXACT [OBOL:automatic] synonym: "respiratory bronchiole mucosa of organ" EXACT [OBOL:automatic] synonym: "respiratory bronchiole mucous membrane" EXACT [OBOL:automatic] synonym: "respiratory bronchiole organ mucosa" EXACT [OBOL:automatic] xref: FMA:263238 is_a: UBERON:0005039 ! implied link automatically realized ! mucosa of bronchiole relationship: part_of UBERON:0002188 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0002188 ! respiratory bronchiole [Term] id: UBERON:0005042 name: mucosa of tympanic membrane def: "A mucosa that is part of a tympanic membrane [Obol]." [OBOL:automatic] synonym: "ear drum mucosa" EXACT [OBOL:automatic] synonym: "ear drum mucosa of organ" EXACT [OBOL:automatic] synonym: "ear drum mucous membrane" EXACT [OBOL:automatic] synonym: "ear drum organ mucosa" EXACT [OBOL:automatic] synonym: "inner epithelial layer of tympanic membrane" EXACT [FMA:56844] synonym: "lateral wall of tympanic cavity mucosa" EXACT [OBOL:automatic] synonym: "lateral wall of tympanic cavity mucosa of organ" EXACT [OBOL:automatic] synonym: "lateral wall of tympanic cavity mucous membrane" EXACT [OBOL:automatic] synonym: "lateral wall of tympanic cavity organ mucosa" EXACT [OBOL:automatic] synonym: "membranous wall of tympanic cavity mucosa" EXACT [OBOL:automatic] synonym: "membranous wall of tympanic cavity mucosa of organ" EXACT [OBOL:automatic] synonym: "membranous wall of tympanic cavity mucous membrane" EXACT [OBOL:automatic] synonym: "membranous wall of tympanic cavity organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of ear drum" EXACT [OBOL:automatic] synonym: "mucosa of lateral wall of tympanic cavity" EXACT [OBOL:automatic] synonym: "mucosa of membranous wall of tympanic cavity" EXACT [OBOL:automatic] synonym: "mucosa of organ of ear drum" EXACT [OBOL:automatic] synonym: "mucosa of organ of lateral wall of tympanic cavity" EXACT [OBOL:automatic] synonym: "mucosa of organ of membranous wall of tympanic cavity" EXACT [OBOL:automatic] synonym: "mucosa of organ of Rivinus ' membrane" EXACT [OBOL:automatic] synonym: "mucosa of organ of tympanic membrane" EXACT [OBOL:automatic] synonym: "mucosa of Rivinus ' membrane" EXACT [OBOL:automatic] synonym: "mucous layer of tympanic membrane" EXACT [FMA:56844] synonym: "mucous membrane of ear drum" EXACT [OBOL:automatic] synonym: "mucous membrane of lateral wall of tympanic cavity" EXACT [OBOL:automatic] synonym: "mucous membrane of membranous wall of tympanic cavity" EXACT [OBOL:automatic] synonym: "mucous membrane of Rivinus ' membrane" EXACT [OBOL:automatic] synonym: "mucous membrane of tympanic membrane" EXACT [OBOL:automatic] synonym: "mucous stratum of tympanic membrane" EXACT [FMA:56844] synonym: "organ mucosa of ear drum" EXACT [OBOL:automatic] synonym: "organ mucosa of lateral wall of tympanic cavity" EXACT [OBOL:automatic] synonym: "organ mucosa of membranous wall of tympanic cavity" EXACT [OBOL:automatic] synonym: "organ mucosa of Rivinus ' membrane" EXACT [OBOL:automatic] synonym: "organ mucosa of tympanic membrane" EXACT [OBOL:automatic] synonym: "Rivinus ' membrane mucosa" EXACT [OBOL:automatic] synonym: "Rivinus ' membrane mucosa of organ" EXACT [OBOL:automatic] synonym: "Rivinus ' membrane mucous membrane" EXACT [OBOL:automatic] synonym: "Rivinus ' membrane organ mucosa" EXACT [OBOL:automatic] synonym: "tympanic membrane mucosa" EXACT [OBOL:automatic] synonym: "tympanic membrane mucosa of organ" EXACT [OBOL:automatic] synonym: "tympanic membrane mucous membrane" EXACT [OBOL:automatic] synonym: "tympanic membrane organ mucosa" EXACT [OBOL:automatic] xref: FMA:56844 xref: SCTID:36411006 is_a: UBERON:0005026 ! implied link automatically realized ! mucosa of middle ear relationship: part_of UBERON:0002364 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0002364 ! tympanic membrane [Term] id: UBERON:0005043 name: mucosa of nasolacrimal duct def: "A mucosa that is part of a nasolacrimal duct [Obol]." [OBOL:automatic] synonym: "mucosa of organ of nasolacrimal duct" EXACT [OBOL:automatic] synonym: "mucous membrane of nasolacrimal duct" EXACT [OBOL:automatic] synonym: "nasolacrimal duct mucosa" EXACT [OBOL:automatic] synonym: "nasolacrimal duct mucosa of organ" EXACT [OBOL:automatic] synonym: "nasolacrimal duct mucous membrane" EXACT [OBOL:automatic] synonym: "nasolacrimal duct organ mucosa" EXACT [OBOL:automatic] synonym: "nasolacrimal ductal mucosa" EXACT [FMA:59664] synonym: "organ mucosa of nasolacrimal duct" EXACT [OBOL:automatic] xref: FMA:59664 is_a: UBERON:0000344 ! implied link automatically realized ! mucosa relationship: part_of UBERON:0002392 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0002392 ! nasolacrimal duct [Term] id: UBERON:0005044 name: mucosa of pharyngotympanic tube def: "A mucosa that is part of a pharyngotympanic tube [Obol]." [OBOL:automatic] synonym: "auditory tube mucosa" EXACT [OBOL:automatic] synonym: "auditory tube mucosa of organ" EXACT [OBOL:automatic] synonym: "auditory tube mucous membrane" EXACT [OBOL:automatic] synonym: "auditory tube organ mucosa" EXACT [OBOL:automatic] synonym: "internal auditory tube mucosa" EXACT [OBOL:automatic] synonym: "internal auditory tube mucosa of organ" EXACT [OBOL:automatic] synonym: "internal auditory tube mucous membrane" EXACT [OBOL:automatic] synonym: "internal auditory tube organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of auditory tube" EXACT [OBOL:automatic] synonym: "mucosa of internal auditory tube" EXACT [OBOL:automatic] synonym: "mucosa of organ of auditory tube" EXACT [OBOL:automatic] synonym: "mucosa of organ of internal auditory tube" EXACT [OBOL:automatic] synonym: "mucosa of organ of pharyngotympanic tube" EXACT [OBOL:automatic] synonym: "mucous membrane of auditory tube" EXACT [OBOL:automatic] synonym: "mucous membrane of internal auditory tube" EXACT [OBOL:automatic] synonym: "mucous membrane of pharyngotympanic tube" EXACT [OBOL:automatic] synonym: "mucuous membrane of eustachian tube" EXACT [FMA:60109] synonym: "mucuous membrane of pharyngotympanic tube" EXACT [FMA:60109] synonym: "organ mucosa of auditory tube" EXACT [OBOL:automatic] synonym: "organ mucosa of internal auditory tube" EXACT [OBOL:automatic] synonym: "organ mucosa of pharyngotympanic tube" EXACT [OBOL:automatic] synonym: "pharyngotympanic tube mucosa" EXACT [OBOL:automatic] synonym: "pharyngotympanic tube mucosa of organ" EXACT [OBOL:automatic] synonym: "pharyngotympanic tube mucous membrane" EXACT [OBOL:automatic] synonym: "pharyngotympanic tube organ mucosa" EXACT [OBOL:automatic] synonym: "tunica mucosa (tuba auditiva)" EXACT [FMA:60109] synonym: "tunica mucosa (tuba auditoria)" EXACT [FMA:60109] xref: FMA:60109 is_a: UBERON:0005026 ! implied link automatically realized ! mucosa of middle ear relationship: part_of UBERON:0002393 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0002393 ! pharyngotympanic tube [Term] id: UBERON:0005045 name: mucosa of ethmoidal sinus def: "A mucosa that is part of a ethmoid sinus [Obol]." [OBOL:automatic] synonym: "ethmoid sinus mucosa" EXACT [OBOL:automatic] synonym: "ethmoid sinus mucosa of organ" EXACT [OBOL:automatic] synonym: "ethmoid sinus mucous membrane" EXACT [OBOL:automatic] synonym: "ethmoid sinus organ mucosa" EXACT [OBOL:automatic] synonym: "ethmoidal sinus mucosa" EXACT [FMA:59776] synonym: "mucosa of ethmoid sinus" EXACT [OBOL:automatic] synonym: "mucosa of organ of ethmoid sinus" EXACT [OBOL:automatic] synonym: "mucous membrane of ethmoid sinus" EXACT [OBOL:automatic] synonym: "organ mucosa of ethmoid sinus" EXACT [OBOL:automatic] xref: FMA:59776 xref: SCTID:65501003 is_a: UBERON:0004785 ! implied link automatically realized ! respiratory system mucosa relationship: part_of UBERON:0002453 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0002453 ! ethmoid sinus [Term] id: UBERON:0005046 name: mucosa of hard palate def: "A mucosa that is part of a hard palate [Obol]." [OBOL:automatic] synonym: "hard palate mucosa" EXACT [OBOL:automatic] synonym: "hard palate mucosa of organ" EXACT [OBOL:automatic] synonym: "hard palate mucous membrane" EXACT [OBOL:automatic] synonym: "hard palate organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of organ of hard palate" EXACT [OBOL:automatic] synonym: "mucous membrane of hard palate" EXACT [OBOL:automatic] synonym: "organ mucosa of hard palate" EXACT [OBOL:automatic] xref: FMA:59783 xref: SCTID:245841005 is_a: UBERON:0005019 ! implied link automatically realized ! mucosa of palate relationship: part_of UBERON:0003216 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0003216 ! hard palate [Term] id: UBERON:0005047 name: mucosa of vocal fold def: "A mucosa that is part of a vocal cord [Obol]." [OBOL:automatic] synonym: "mucosa of glottis" EXACT [FMA:64017] synonym: "mucosa of organ of true vocal cord" EXACT [OBOL:automatic] synonym: "mucosa of organ of vocal cord" EXACT [OBOL:automatic] synonym: "mucosa of true vocal cord" EXACT [OBOL:automatic] synonym: "mucosa of vocal cord" EXACT [OBOL:automatic] synonym: "mucous membrane of true vocal cord" EXACT [OBOL:automatic] synonym: "mucous membrane of vocal cord" EXACT [OBOL:automatic] synonym: "organ mucosa of true vocal cord" EXACT [OBOL:automatic] synonym: "organ mucosa of vocal cord" EXACT [OBOL:automatic] synonym: "true vocal cord mucosa" EXACT [OBOL:automatic] synonym: "true vocal cord mucosa of organ" EXACT [OBOL:automatic] synonym: "true vocal cord mucous membrane" EXACT [OBOL:automatic] synonym: "true vocal cord organ mucosa" EXACT [OBOL:automatic] synonym: "vocal cord mucosa" EXACT [OBOL:automatic] synonym: "vocal cord mucosa of organ" EXACT [OBOL:automatic] synonym: "vocal cord mucous membrane" EXACT [OBOL:automatic] synonym: "vocal cord organ mucosa" EXACT [OBOL:automatic] synonym: "vocal fold mucosa" EXACT [FMA:64017] xref: FMA:64017 is_a: UBERON:0001824 ! implied link automatically realized ! mucosa of larynx relationship: part_of UBERON:0003706 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0003706 ! vocal cord [Term] id: UBERON:0005048 name: mucosa of uterine tube def: "A mucosa that is part of a fallopian tube [Obol]." [OBOL:automatic] synonym: "fallopian tube mucosa" EXACT [OBOL:automatic] synonym: "fallopian tube mucosa of organ" EXACT [OBOL:automatic] synonym: "fallopian tube mucous membrane" EXACT [OBOL:automatic] synonym: "fallopian tube organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of fallopian tube" EXACT [OBOL:automatic] synonym: "mucosa of organ of fallopian tube" EXACT [OBOL:automatic] synonym: "mucosa of organ of uterine tube" EXACT [OBOL:automatic] synonym: "mucosa of oviduct" EXACT [FMA:18319] synonym: "mucous membrane of fallopian tube" EXACT [OBOL:automatic] synonym: "mucous membrane of uterine tube" EXACT [OBOL:automatic] synonym: "organ mucosa of fallopian tube" EXACT [OBOL:automatic] synonym: "organ mucosa of uterine tube" EXACT [OBOL:automatic] synonym: "tunica mucosa tubae uterinae" EXACT [FMA:18319, FMA:TA] synonym: "uterine tubal mucosa" EXACT [FMA:18319] synonym: "uterine tube mucosa" EXACT [OBOL:automatic] synonym: "uterine tube mucosa of organ" EXACT [OBOL:automatic] synonym: "uterine tube mucous membrane" EXACT [OBOL:automatic] synonym: "uterine tube organ mucosa" EXACT [OBOL:automatic] xref: FMA:18319 is_a: UBERON:0000344 ! implied link automatically realized ! mucosa is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0003889 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0003889 ! fallopian tube [Term] id: UBERON:0005049 name: mucosa of infundibulum of uterine tube def: "A mucosa that is part of a uterine tube infundibulum [Obol]." [OBOL:automatic] synonym: "mucosa of infundibulum of fallopian tube" EXACT [FMA:18357] synonym: "mucosa of infundibulum of oviduct" EXACT [FMA:18357] synonym: "mucosa of organ of uterine tube infundibulum" EXACT [OBOL:automatic] synonym: "mucosa of uterine tube infundibulum" EXACT [OBOL:automatic] synonym: "mucous membrane of uterine tube infundibulum" EXACT [OBOL:automatic] synonym: "organ mucosa of uterine tube infundibulum" EXACT [OBOL:automatic] synonym: "uterine tube infundibulum mucosa" EXACT [OBOL:automatic] synonym: "uterine tube infundibulum mucosa of organ" EXACT [OBOL:automatic] synonym: "uterine tube infundibulum mucous membrane" EXACT [OBOL:automatic] synonym: "uterine tube infundibulum organ mucosa" EXACT [OBOL:automatic] xref: FMA:18357 is_a: UBERON:0005048 ! implied link automatically realized ! mucosa of uterine tube relationship: part_of UBERON:0003984 intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0003984 ! uterine tube infundibulum [Term] id: UBERON:0005050 name: liver papillary process synonym: "papillary process of caudate lobe of liver" EXACT [FMA:14506] synonym: "processus papillaris" EXACT [FMA:14506] xref: FMA:14506 xref: MA:0001643 xref: SCTID:271187002 is_a: UBERON:0000063 ! organ segment is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0002107 ! liver [Term] id: UBERON:0005051 name: mediastinum testis def: "The mediastinum testis is a network of fibrous connective tissue that extends from the upper to near the lower extremity of the testis, and is wider above than below. From its front and sides numerous imperfect septa (trabeculæ) are given off, which radiate toward the surface of the organ, and are attached to the tunica albuginea. They divide the interior of the organ into a number of incomplete spaces, called lobules. These are somewhat cone-shaped, being broad at their bases at the surface of the gland, and becoming narrower as they converge to the mediastinum. The mediastinum supports the rete testis and blood vessels of the testis in their passage to and from the substance of the gland[WP]" [Wikipedia:Mediastinum_testis] synonym: "body of highmore" EXACT [FMA:19812] synonym: "mediastinum of testis" EXACT [FMA:19812] synonym: "testis mediastinum" EXACT [FMA:19812] xref: EMAPA:18331 xref: FMA:19812 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b5/Hodenschema.svg/200px-Hodenschema.svg.png xref: SCTID:362279007 is_a: UBERON:0005423 ! developing anatomical structure relationship: has_part UBERON:0002384 ! connective tissue relationship: overlaps UBERON:0003728 ! mediastinum relationship: part_of UBERON:0000473 ! testis relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0005052 name: gizzard def: "The muscular enlargement of the alimentary canal that has usually thick muscular walls and a tough horny lining for grinding the food and when the crop is present follows it and the proventriculus." [BTO:0000520, Wikipedia:Gizzard] comment: BTO also includes: A thickened part of the alimentary canal in some animals (as an insect or an earthworm) that is similar in function to the crop of a bird. subset: organ_slim synonym: "gastric mill" EXACT [Wikipedia:Gizzard] synonym: "gigerium" EXACT [Wikipedia:Gizzard] synonym: "ventriculus" RELATED [Wikipedia:Gizzard] xref: BTO:0000520 xref: GAID:1238 xref: MESH:A.13.853.363 xref: ncithesaurus:Gizzard is_a: UBERON:0000062 ! organ is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: part_of UBERON:0001555 ! digestive tract [Term] id: UBERON:0005053 name: nerve cord subset: dubious_grouping xref: BILA:0000136 xref: BTO:0001656 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001017 ! central nervous system [Term] id: UBERON:0005054 name: dorsal nerve cord def: "The dorsal tubular cord of nervous tissue above the notochord of a chordate that comprises or develops into the central nervous system[BTO]. The nerve cord of chordates develops dorsally in the body as a hollow tube above the notochord. In most species it differentiates in embryogeny into the brain anteriorly and spinal cord that runs through the trunk and tail. Together the brain and spinal cord are the central nervous system to which peripheral sensory and motor nerves connect[TOL]. The dorsal nerve cord is one of the embryonic features unique to chordates, along with a notochord, a post-anal tail and pharyngeal slits. The dorsal nerve cord is a hollow cord dorsal to the notochord. It is formed from a part of the ectoderm that rolls, forming the hollow tube, compared to other animal phyla, which have solid, ventral tubes. The dorsal nerve cord is later modified into the brain and spinal cord. Dorsal nerve cord is mainly found in phylum Vertebrata[WP]." [BTO:0002329, http://tolweb.org/Chordata/2499, Wikipedia:Dorsal_nerve_cord] xref: BTO:0002329 is_a: UBERON:0005053 ! nerve cord relationship: develops_from UBERON:0000924 ! ectoderm [Term] id: UBERON:0005055 name: zone of long bone def: "An organ part that is part of a long bone [Obol]." [OBOL:automatic] subset: uberon_slim synonym: "long bone zone" EXACT [] xref: FMA:24008 is_a: UBERON:0005913 ! implied link automatically realized ! zone of bone organ relationship: part_of UBERON:0002495 intersection_of: UBERON:0005913 ! zone of bone organ intersection_of: part_of UBERON:0002495 ! long bone [Term] id: UBERON:0005056 name: external female genitalia def: "An external reproductive organ that is part of a female reproductive system [Obol]." [OBOL:automatic] subset: organ_slim synonym: "external female genital organ" EXACT [BTO:0003100] synonym: "external genitalia of female reproductive system" EXACT [OBOL:automatic] synonym: "female external genitalia" EXACT [FMA:45649] synonym: "organa genitalia feminina externa" RELATED [BTO:0003100] xref: BTO:0003100 xref: EMAPA:30984 xref: FMA:45649 xref: galen:FemaleExternalGenitalia xref: SCTID:362234008 is_a: UBERON:0003134 ! implied link automatically realized ! female reproductive organ is_a: UBERON:0004176 ! implied link automatically realized ! external reproductive organ relationship: part_of UBERON:0000474 intersection_of: UBERON:0004176 ! external reproductive organ intersection_of: part_of UBERON:0000474 ! female reproductive system disjoint_from: UBERON:0004053 ! external male genitalia [Term] id: UBERON:0005057 name: immune organ def: "An organ that is part of a immune system [Obol]." [OBOL:automatic] subset: organ_slim is_a: UBERON:0000062 ! implied link automatically realized ! organ relationship: part_of UBERON:0002405 intersection_of: UBERON:0000062 ! organ intersection_of: part_of UBERON:0002405 ! immune system [Term] id: UBERON:0005058 name: hemolymphoid system gland def: "A gland that is part of a hemolymphoid system [Obol]." [OBOL:automatic] subset: organ_slim synonym: "hemopoietic or lymphoid gland" EXACT [GOC:cjm] synonym: "hemopoietic or lymphoid organ" BROAD [GO:0048534] xref: MA:0002962 is_a: UBERON:0002530 ! implied link automatically realized ! gland relationship: part_of UBERON:0002193 intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0002193 ! hemolymphoid system [Term] id: UBERON:0005059 name: Drosophila lymph gland comment: out of scope is_obsolete: true [Term] id: UBERON:0005061 name: neural groove def: "The median dorsal longitudinal groove formed in the embryo by the neural plate after the appearance of the neural folds." [GO:0001842, GOC:cjm] xref: AAO:0011071 xref: ncithesaurus:Neural_Groove xref: SCTID:361463007 xref: XAO:0000248 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0003075 ! neural plate [Term] id: UBERON:0005062 name: neural fold def: "One of the two elevated edges of the neural groove." [GO:0001842, MP:0011256] synonym: "medullary fold" EXACT [MP:0011256] xref: EHDAA2:0001249 xref: EMAPA:16090 xref: EMAPA:16093 xref: EMAPA:16142 xref: EMAPA:16146 xref: EMAPA:16151 xref: EMAPA:16155 xref: EMAPA:16159 xref: EMAPA:16162 xref: EMAPA:16288 xref: EMAPA:16292 xref: EMAPA:16295 xref: EMAPA:16299 xref: EMAPA:16303 xref: EMAPA:16307 xref: EMAPA:16528 xref: ncithesaurus:Neural_Fold xref: SCTID:361461009 xref: XAO:0004087 is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0005157 ! epithelial fold is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0003075 ! neural plate [Term] id: UBERON:0005063 name: left ventricular compact myocardium def: "." [GO:0003224] is_a: UBERON:0004127 ! implied link automatically realized ! compact layer of ventricle relationship: part_of UBERON:0002084 intersection_of: UBERON:0004127 ! compact layer of ventricle intersection_of: part_of UBERON:0002084 ! heart left ventricle relationship: part_of UBERON:0003382 {source="GO"} ! cardiac muscle of left ventricle [Term] id: UBERON:0005064 name: left ventricular trabecular myocardium def: "." [GO:0003225] is_a: UBERON:0004126 ! implied link automatically realized ! trabecular layer of ventricle relationship: part_of UBERON:0002084 intersection_of: UBERON:0004126 ! trabecular layer of ventricle intersection_of: part_of UBERON:0002084 ! heart left ventricle relationship: part_of UBERON:0003382 {source="GO"} ! cardiac muscle of left ventricle [Term] id: UBERON:0005065 name: right ventricular compact myocardium def: "." [GO:0003226] is_a: UBERON:0004127 ! implied link automatically realized ! compact layer of ventricle relationship: part_of UBERON:0002080 intersection_of: UBERON:0004127 ! compact layer of ventricle intersection_of: part_of UBERON:0002080 ! heart right ventricle relationship: part_of UBERON:0003381 {source="GO"} ! cardiac muscle of right ventricle [Term] id: UBERON:0005066 name: right ventricular trabecular myocardium def: "." [GO:0003227] is_a: UBERON:0004126 ! implied link automatically realized ! trabecular layer of ventricle relationship: part_of UBERON:0002080 intersection_of: UBERON:0004126 ! trabecular layer of ventricle intersection_of: part_of UBERON:0002080 ! heart right ventricle relationship: part_of UBERON:0003381 {source="GO"} ! cardiac muscle of right ventricle [Term] id: UBERON:0005067 name: amphid sensory organ def: "Amphid sensory organs are the sensory organs of nematodes[GO]." [GO:0003386] subset: organ_slim synonym: "amphid sensillum" EXACT [] xref: WBbt:0005391 is_a: UBERON:0000020 ! sense organ [Term] id: UBERON:0005068 name: neural rod def: "a solid rod of neurectoderm derived from the neural keel. The neural rod is roughly circular in cross section. Neural rod formation occurs during primary neurulation in teleosts[GO]. An intermediate stage in the development of the central nervous system present during the segmentation period; the neural rod is roughly cylindrical in shape, forms from the neural keel, and is not yet hollowed out into the neural tube[ZFIN]." [GO:0014024, ZFA:0000133] xref: EFO:0003498 xref: ZFA:0000133 is_a: UBERON:0005423 ! developing anatomical structure relationship: develops_from UBERON:0002346 ! neural ectoderm relationship: develops_from UBERON:0007135 ! neural keel relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0005069 name: neural fold hinge point def: "The median hinge point extends for the entire length of the neural tube, and the lateral hinge points do not form in the spinal cord region of the neural tube[GO]." [GO:0021504] is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0001049 ! neural tube [Term] id: UBERON:0005070 name: anterior neuropore def: "The anterior neuropore appears before the process of neural tube closure is complete[GO]." [GO:0021506] comment: GO def of anterior neuropore closure is: The joining together of the neural folds of the rostral opening of the neural tube synonym: "cephalic neuropore" EXACT [SCTID:361478000] synonym: "cranial neuropore" EXACT [UBERON:cjm] synonym: "rostral neuropore" EXACT [EMAPA:16523] xref: EHDAA2:0001768 xref: EMAPA:16523 xref: OG:0000768 xref: SCTID:361478000 is_a: UBERON:0005077 ! neuropore [Term] id: UBERON:0005071 name: posterior neuropore def: "The posterior neuropore appears before the process of neural tube closure is complete[GO]." [GO:0021507] synonym: "caudal neuropore" EXACT [EMAPA:16526] xref: EHDAA:900 xref: EHDAA2:0000223 xref: EMAPA:16526 xref: OG:0000769 xref: SCTID:361479008 is_a: UBERON:0005077 ! neuropore [Term] id: UBERON:0005073 name: preganglionic parasympathetic nervous system is_a: UBERON:0000011 ! parasympathetic nervous system [Term] id: UBERON:0005074 name: postganglionic parasympathetic nervous system is_a: UBERON:0000011 ! parasympathetic nervous system relationship: develops_from UBERON:0005073 ! preganglionic parasympathetic nervous system [Term] id: UBERON:0005075 name: forebrain-midbrain boundary synonym: "forebrain midbrain boundary" EXACT [ZFA:0001367] xref: ZFA:0001367 is_a: UBERON:0000015 ! implied link automatically realized ! anatomical boundary relationship: adjacent_to UBERON:0001890 relationship: adjacent_to UBERON:0001891 intersection_of: UBERON:0000015 ! anatomical boundary intersection_of: adjacent_to UBERON:0001890 ! forebrain intersection_of: adjacent_to UBERON:0001891 ! midbrain [Term] id: UBERON:0005076 name: hindbrain-spinal cord boundary is_a: UBERON:0000015 ! implied link automatically realized ! anatomical boundary relationship: adjacent_to UBERON:0002028 relationship: adjacent_to UBERON:0002240 intersection_of: UBERON:0000015 ! anatomical boundary intersection_of: adjacent_to UBERON:0002028 ! hindbrain intersection_of: adjacent_to UBERON:0002240 ! spinal cord [Term] id: UBERON:0005077 name: neuropore def: "Joined neural folds at either end of the neural tube.[GO]." [GO:0021995] xref: SCTID:360408007 is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0001049 ! neural tube [Term] id: UBERON:0005078 name: lamina terminalis def: ".[GO]." [GO:0021996] xref: AAO:0000881 xref: BM:LT xref: EHDAA2:0000903 xref: EMAPA:16649 xref: EMAPA:16904 xref: FMA:61975 xref: SCTID:361483008 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: develops_from UBERON:0005070 ! anterior neuropore [Term] id: UBERON:0005079 name: eggshell def: "a product of the somatic follicle cell epithelium and a structure that supports the egg in a hostile environment, minimizing water loss whilst allowing gas exchanges essential for embryonic respiration[GO]." [GO:0030703, Wikipedia:Eggshell] synonym: "egg shell" EXACT [BTO:0001716] xref: BTO:0001716 xref: MESH:A.13.316 xref: WBbt:0005843 is_a: UBERON:0000476 ! acellular anatomical structure relationship: surrounds UBERON:0007379 ! egg [Term] id: UBERON:0005080 name: metanephric ureteric bud def: "the portion of the ureteric bud tube that contributes to the morphogenesis of the metanephros[GO]." [GO:0035502] is_a: UBERON:0000084 ! implied link automatically realized ! ureteric bud is_a: UBERON:0007497 ! implied link automatically realized ! developing epithelial placode relationship: develops_into UBERON:0000081 intersection_of: UBERON:0000084 ! ureteric bud intersection_of: develops_into UBERON:0000081 ! metanephros [Term] id: UBERON:0005081 name: ureter ureteric bud def: "The portion of the ureteric bud that contributes to the morphogenesis of the ureter. The ureter ureteric bud is the initial structure that forms the ureter[GO]." [GO:0035503] is_a: UBERON:0000084 ! implied link automatically realized ! ureteric bud is_a: UBERON:0007497 ! implied link automatically realized ! developing epithelial placode relationship: develops_into UBERON:0000056 intersection_of: UBERON:0000084 ! ureteric bud intersection_of: develops_into UBERON:0000056 ! ureter [Term] id: UBERON:0005082 name: tube lumen def: "A hole in a tube[GO]." [GO:0060609] xref: AEO:0000078 xref: EHDAA2:0003078 is_a: UBERON:0000464 ! implied link automatically realized ! anatomical space relationship: surrounded_by UBERON:0000025 intersection_of: UBERON:0000464 ! anatomical space intersection_of: surrounded_by UBERON:0000025 ! tube [Term] id: UBERON:0005083 name: nipple sheath def: "a circular ingrowth of the epidermis around the region of the mammary sprout[GO]." [GO:0060659] is_a: UBERON:0001003 ! epidermis is_a: UBERON:0003244 ! implied link automatically realized ! epithelium of mammary gland is_a: UBERON:0008367 ! implied link automatically realized ! breast epithelium relationship: part_of UBERON:0002030 ! nipple [Term] id: UBERON:0005085 name: ectodermal placode def: "An ectodermal placode is a thickening of the ectoderm that is the primordium of many structures derived from the ectoderm[GO]" [GO:0060788] comment: Homology: With the exception of the adenohypophysis, homologues of the nonneurogenic placodes (e.g. placodes giving rise to the teeth, hair follicles and lens), appear to be lacking in invertebrate chordates is_a: UBERON:0001048 ! implied link automatically realized ! primordium relationship: part_of UBERON:0000924 intersection_of: UBERON:0001048 ! primordium intersection_of: part_of UBERON:0000924 ! ectoderm [Term] id: UBERON:0005086 name: hair follicle placode def: "An hair follicle placode is a thickening of the ectoderm that will give rise to the hair follicle bud[GO]." [GO:0060789] synonym: "hair gem" RELATED [ISBN:9780878932504 "Developmental Biology"] synonym: "hair peg" RELATED [ISBN:9780878932504 "Developmental Biology"] synonym: "vibrissa placode" NARROW [] is_a: UBERON:0005085 {source="GO"} ! ectodermal placode relationship: develops_into UBERON:0002073 intersection_of: UBERON:0001048 ! primordium intersection_of: develops_into UBERON:0002073 ! hair follicle relationship: develops_from UBERON:0001003 ! epidermis [Term] id: UBERON:0005087 name: tooth placode def: "An tooth placode is a thickening of the ectoderm that will give rise to the tooth bud[GO]." [GO:0060790] synonym: "dental primordium" EXACT [ZFA:0001153] synonym: "tooth germ" EXACT [ZFA:0001153] xref: BTO:0001511 xref: MESH:A.14.254.900.720 xref: ZFA:0001153 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000479 {source="ZFA"} ! tissue is_a: UBERON:0005085 {source="GO"} ! ectodermal placode is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue relationship: develops_into UBERON:0001091 intersection_of: UBERON:0001048 ! primordium intersection_of: develops_into UBERON:0001091 ! calcareous tooth relationship: part_of UBERON:0003351 {source="ZFA"} ! pharyngeal epithelium [Term] id: UBERON:0005088 name: sebaceous gland placode def: "A sebaceous gland placode is a thickening of the ectoderm that will give rise to the sebaceous gland bud[GO]." [GO:0060791] comment: todo - add bud is_a: UBERON:0005085 {source="GO"} ! ectodermal placode relationship: develops_into UBERON:0001821 intersection_of: UBERON:0001048 ! primordium intersection_of: develops_into UBERON:0001821 ! sebaceous gland [Term] id: UBERON:0005089 name: sweat gland placode def: "An sweat gland placode is a thickening of the ectoderm that will give rise to the sweat gland bud[GO]." [GO:0060793] comment: todo - add bud is_a: UBERON:0005085 {source="GO"} ! ectodermal placode relationship: develops_into UBERON:0001820 intersection_of: UBERON:0001048 ! primordium intersection_of: develops_into UBERON:0001820 ! sweat gland [Term] id: UBERON:0005090 name: muscle structure def: "Muscle structures are contractile cells, tissues or organs that are found in multicellular organisms[GO]." [GO:0061061] xref: FBbt:00005073 is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0005091 name: left horn of sinus venosus xref: EHDAA:482 xref: EHDAA2:0001840 xref: EMAPA:16238 xref: FMA:70321 xref: OG:0000488 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: in_left_side_of UBERON:0002063 ! sinus venosus [Term] id: UBERON:0005092 name: right horn of sinus venosus xref: EHDAA:484 xref: EHDAA2:0001841 xref: EMAPA:16239 xref: FMA:70318 xref: OG:0000489 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: in_right_side_of UBERON:0002063 ! sinus venosus [Term] id: UBERON:0005093 name: cement gland def: "A simple mucus-secreting structure that is positioned at the front of the embryo, attaches the newly hatched embryo to a support before the hatchling can swim well or feed, and marks the anterior-most dorsal ectoderm[XAO]." [GO:0071570, XAO:0000033] subset: organ_slim xref: AAO:0010373 xref: BTO:0002738 xref: XAO:0000033 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0002530 ! gland [Term] id: UBERON:0005094 name: beak def: "The avian beak is an external anatomical structure, in the head region, that is adapted for feeding self and young, catching prey, probing, etc. It encompasses, but is not restricted to, the maxilla, mandible, maxillary ramaphotheca, mandibular ramaphotheca, nostril, nasal fossa, nasal bones, egg tooth and rictus[GO]. The beak, bill or rostrum is an external anatomical structure of birds which is used for eating and for grooming, manipulating objects, killing prey, probing for food, courtship and feeding young. The term beak is also used to refer to a similar mouthpart in some Ornithischian dinosaurs, monotremes, cephalopods, cetaceans, pufferfishes, turtles, Anuran tadpoles and sirens[WP]." [GO:0071728, Wikipedia:Beak] comment: TODO - add superclass synonym: "avian beak" EXACT [] synonym: "bill" RELATED [] synonym: "rostrum" RELATED [] xref: MESH:A.13.114 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0000033 ! head [Term] id: UBERON:0005095 name: kidney rudiment def: "." [GO:0072003] is_a: UBERON:0005423 ! developing anatomical structure relationship: develops_from UBERON:0007687 {source="GO"} ! kidney field relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0005096 name: descending thin limb alt_id: UBERON:0005165 def: "The descending thin limb is a part of the loop of Henle situated just after the proximal straight tubule (S3). It extends to the tip of the loop of Henle[GO]." [GO:0072022, Wikipedia:Descending_limb_of_loop_of_Henle] subset: uberon_slim synonym: "descending limb of henle%27s loop" RELATED [Wikipedia:Descending_limb_of_loop_of_Henle] synonym: "descending limb of loop of henle" RELATED [Wikipedia:Descending_limb_of_loop_of_Henle] synonym: "descending thin limb of loop of Henle" EXACT [] synonym: "loop of Henle descending thin limb" EXACT [] synonym: "loop of henle thin descending limb" EXACT [MA:0002625] synonym: "pars descendens (tubulus attenuatus)" EXACT [FMA:17719] synonym: "thin descending limb" EXACT [] synonym: "thin descending limb of loop of henle" RELATED [Wikipedia:Descending_limb_of_loop_of_Henle] synonym: "thin descending limb of the loop of henle" RELATED [Wikipedia:Descending_limb_of_loop_of_Henle] synonym: "thin descending loop of henle" RELATED [Wikipedia:Descending_limb_of_loop_of_Henle] xref: EMAPA:28325 xref: EMAPA:28355 xref: EMAPA:29681 xref: FMA:17719 xref: MA:0002625 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0001288 ! loop of Henle relationship: part_of UBERON:0004136 ! intermediate tubule [Term] id: UBERON:0005097 name: connecting tubule def: "The connecting tubule is a tubular segment of the nephron; it connects the distal convoluted tubule to the collecting duct[GO]." [GO:0072027, Wikipedia:Connecting_tubule] synonym: "renal connecting tubule" EXACT [MA:0002610] xref: BTO:0004539 xref: EMAPA:27758 xref: EMAPA:27790 xref: EMAPA:27865 xref: EMAPA:28011 xref: MA:0002610 is_a: UBERON:0007685 ! region of nephron tubule relationship: develops_from UBERON:0003220 {source="Wikipedia"} ! metanephric mesenchyme [Term] id: UBERON:0005099 name: short descending thin limb def: "The short descending thin limb is the descending thin limb of a short nephron that has a squamous epithelial morphology[GO]." [GO:0072063] comment: TODO - epithelium types is_a: UBERON:0000483 ! epithelium is_a: UBERON:0004211 ! implied link automatically realized ! nephron epithelium is_a: UBERON:0006914 ! implied link automatically realized ! squamous epithelium relationship: part_of UBERON:0001285 ! nephron [Term] id: UBERON:0005100 name: long descending thin limb def: "The long descending limb starts in the inner stripe of the outer medulla and extends into the inner medulla[GO]." [GO:0072064] is_a: UBERON:0000483 ! epithelium is_a: UBERON:0004211 ! implied link automatically realized ! nephron epithelium relationship: part_of UBERON:0001285 ! nephron [Term] id: UBERON:0005101 name: early distal convoluted tubule def: "The early distal convoluted tubule contains DCT cells and is vasopressin-insensitive[GO]." [GO:0072067] xref: EMAPA:28393 is_a: UBERON:0000483 ! epithelium is_a: UBERON:0008408 ! implied link automatically realized ! distal tubular epithelium relationship: part_of UBERON:0001292 ! distal convoluted tubule [Term] id: UBERON:0005102 name: late distal convoluted tubule def: "The late distal convoluted tubule contains DCT cells and intercalated (IC) alpha and beta cells and is vasopressin-sensitive[GO]." [GO:0072068] comment: TODO - CL xref: EMAPA:28393 is_a: UBERON:0000483 ! epithelium is_a: UBERON:0008408 ! implied link automatically realized ! distal tubular epithelium relationship: part_of UBERON:0001292 ! distal convoluted tubule [Term] id: UBERON:0005103 name: mesonephric epithelium def: "An epithelium that is part of a mesonephros [Obol]." [OBOL:automatic] is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004819 ! implied link automatically realized ! kidney epithelium relationship: part_of UBERON:0000080 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000080 ! mesonephros [Term] id: UBERON:0005104 name: anterior mesonephric tubule def: "The anterior mesonephric tubule is an epithelial tube that is part of the mesonephros[GO]." [GO:0072165] is_a: UBERON:0000083 ! mesonephric tubule [Term] id: UBERON:0005105 name: posterior mesonephric tubule def: "The posterior mesonephric tubule is an epithelial tube that is part of the mesonephros[GO]." [GO:0072166] xref: EMAPA:30571 xref: EMAPA:30574 is_a: UBERON:0000083 ! mesonephric tubule [Term] id: UBERON:0005106 name: metanephric tubule def: "A metanephric tubule is an epithelial tube that is part of the metanephros[GO]." [GO:0072173] xref: OG:0001526 is_a: UBERON:0003914 ! implied link automatically realized ! epithelial tube is_a: UBERON:0005108 ! implied link automatically realized ! metanephric epithelium is_a: UBERON:0006555 ! implied link automatically realized ! excretory tube relationship: part_of UBERON:0000081 intersection_of: UBERON:0003914 ! epithelial tube intersection_of: part_of UBERON:0000081 ! metanephros [Term] id: UBERON:0005107 name: metanephric cap def: "The metanephric cap is formed by the condensation of metanephric mesenchymal cells surrounding the ureteric bud tip[GO]. Mesenchyme closely apposed to the tips of the buds is called cap mesenchyme; it will later go on to form nephrons etc[GUDMAP]." [GO:0072185, http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron] comment: TODO - check EMAPA synonym: "cap mesenchyme" EXACT [EMAPA:27621] xref: EMAPA:27621 xref: MA:0002997 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0003220 ! metanephric mesenchyme relationship: surrounds UBERON:0000084 ! ureteric bud [Term] id: UBERON:0005108 name: metanephric epithelium def: "An epithelium is a tissue that covers the internal or external surfaces of an anatomical structure[GO]." [GO:0072207] is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004819 ! implied link automatically realized ! kidney epithelium relationship: part_of UBERON:0000081 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000081 ! metanephros [Term] id: UBERON:0005109 name: metanephric smooth muscle tissue def: ".[GO]." [GO:0072208] is_a: UBERON:0005321 ! implied link automatically realized ! mesonephric smooth muscle tissue relationship: part_of UBERON:0000081 intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0000081 ! metanephros [Term] id: UBERON:0005110 name: metanephric nephron alt_id: UBERON:0005142 def: "A metanephric nephron is the functional unit of the metanephros[GO]." [GO:0072273] xref: OG:0000719 is_a: UBERON:0001285 ! implied link automatically realized ! nephron relationship: part_of UBERON:0000081 intersection_of: UBERON:0001285 ! nephron intersection_of: part_of UBERON:0000081 ! metanephros relationship: develops_from UBERON:0003220 {source="Wikipedia:Nephron"} ! metanephric mesenchyme [Term] id: UBERON:0005111 name: metanephric pyramid def: "Metanephric pyramids are the conical masses that constitute the renal medulla in a metanephros; they contain the loops of Henle and the medullary collecting ducts[GO]." [GO:0072211] is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004200 ! implied link automatically realized ! kidney pyramid relationship: part_of UBERON:0000081 intersection_of: UBERON:0004200 ! kidney pyramid intersection_of: part_of UBERON:0000081 ! metanephros [Term] id: UBERON:0005113 name: metanephric cortex def: "The metanephric cortex is the outer region of the metanephros[GO]." [GO:0072214] xref: EHDAA2:0001140 xref: OG:0000714 is_a: UBERON:0001225 ! implied link automatically realized ! cortex of kidney is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0000081 intersection_of: UBERON:0001851 ! cortex intersection_of: part_of UBERON:0000081 ! metanephros [Term] id: UBERON:0005114 name: metanephric ascending thin limb def: "The metanephric ascending thin limb is a segment of a nephron tubule in the metanephros lying in the inner medulla that is permeable to ions but not to water and has a simple epithelium; active transepithelial solute transport is absent[GO]." [GO:0072218] is_a: UBERON:0004193 ! implied link automatically realized ! loop of Henle ascending limb thin segment is_a: UBERON:0005146 ! implied link automatically realized ! metanephric nephron tubule relationship: part_of UBERON:0000081 intersection_of: UBERON:0004193 ! loop of Henle ascending limb thin segment intersection_of: part_of UBERON:0000081 ! metanephros [Term] id: UBERON:0005115 name: metanephric cortical collecting duct def: "The metanephric cortical collecting duct is the portion of the metanephric collecting duct that resides in the renal cortex[GO]." [GO:0072219] is_a: UBERON:0004203 ! implied link automatically realized ! cortical collecting duct relationship: part_of UBERON:0000081 intersection_of: UBERON:0004203 ! cortical collecting duct intersection_of: part_of UBERON:0000081 ! metanephros [Term] id: UBERON:0005116 name: metanephric descending thin limb def: "It extends to the tip of the metanephric loop of Henle[GO]." [GO:0072220] is_a: UBERON:0005096 ! implied link automatically realized ! descending thin limb relationship: part_of UBERON:0000081 intersection_of: UBERON:0005096 ! descending thin limb intersection_of: part_of UBERON:0000081 ! metanephros [Term] id: UBERON:0005117 name: metanephric distal convoluted tubule def: "The metanephric distal convoluted tubule is a portion of the metanephric nephron tubule that connects the metanephric loop of Henle to the collecting duct[GO]." [GO:0072221] is_a: UBERON:0001292 ! implied link automatically realized ! distal convoluted tubule is_a: UBERON:0005129 ! implied link automatically realized ! metanephric distal tubule relationship: part_of UBERON:0000081 intersection_of: UBERON:0001292 ! distal convoluted tubule intersection_of: part_of UBERON:0000081 ! metanephros [Term] id: UBERON:0005118 name: metanephric early distal convoluted tubule def: "The metanephric early distal convoluted tubule contains metanephric DCT cells and is vasopressin-insensitive[GO]." [GO:0072222] is_a: UBERON:0005101 ! implied link automatically realized ! early distal convoluted tubule is_a: UBERON:0005134 ! implied link automatically realized ! metanephric nephron epithelium relationship: part_of UBERON:0000081 intersection_of: UBERON:0005101 ! early distal convoluted tubule intersection_of: part_of UBERON:0000081 ! metanephros [Term] id: UBERON:0005119 name: metanephric glomerular mesangium def: "The metanephric glomerular mesangium is the thin membrane connective tissue composed of mesangial cells in the metanephros, which helps to support the capillary loops in a renal glomerulus[GO]." [GO:0072223] is_a: UBERON:0002320 ! implied link automatically realized ! glomerular mesangium relationship: part_of UBERON:0000081 intersection_of: UBERON:0002320 ! glomerular mesangium intersection_of: part_of UBERON:0000081 ! metanephros [Term] id: UBERON:0005120 name: metanephric late distal convoluted tubule def: "The metanephric late distal convoluted tubule contains metanephric DCT cells and intercalated (IC) alpha and beta cells and is vasopressin-sensitive[GO]." [GO:0072225] is_a: UBERON:0005102 ! implied link automatically realized ! late distal convoluted tubule is_a: UBERON:0005134 ! implied link automatically realized ! metanephric nephron epithelium relationship: part_of UBERON:0000081 intersection_of: UBERON:0005102 ! late distal convoluted tubule intersection_of: part_of UBERON:0000081 ! metanephros [Term] id: UBERON:0005121 name: metanephric long descending thin limb bend def: "The metanephric long descending thin limb bend is a part of the descending thin limb of a long nephron that lies beyond the prebend segment in the metanephros[GO]." [GO:0072226] is_a: UBERON:0004206 ! implied link automatically realized ! long descending thin limb bend relationship: part_of UBERON:0000081 intersection_of: UBERON:0004206 ! long descending thin limb bend intersection_of: part_of UBERON:0000081 ! metanephros [Term] id: UBERON:0005122 name: metanephric macula densa def: "The metanephric macula densa is an area of specialized cells in the distal tubule of the metanephros that makes contact with the vascular pole of the glomerulus[GO]." [GO:0072227] is_a: UBERON:0002335 ! implied link automatically realized ! macula densa is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0000081 intersection_of: UBERON:0002335 ! macula densa intersection_of: part_of UBERON:0000081 ! metanephros [Term] id: UBERON:0005123 name: metanephric prebend segment def: "The metanephric prebend segment is a part of the metanephric descending thin limb that lies before the bend and exhibits permeabilities characteristic of the ascending limb, especially negligible water permeability[GO]." [GO:0072228] is_a: UBERON:0004207 ! implied link automatically realized ! prebend segment relationship: part_of UBERON:0000081 intersection_of: UBERON:0004207 ! prebend segment intersection_of: part_of UBERON:0000081 ! metanephros [Term] id: UBERON:0005124 name: metanephric proximal convoluted tubule def: "The metanephric proximal convoluted tubule is the most proximal portion of the metanephric proximal tubule and extends from the metanephric glomerular capsule to the metanephric proximal straight tubule[GO]." [GO:0072229] is_a: UBERON:0001287 ! implied link automatically realized ! proximal convoluted tubule is_a: UBERON:0005151 ! implied link automatically realized ! metanephric proximal tubule relationship: part_of UBERON:0000081 intersection_of: UBERON:0001287 ! proximal convoluted tubule intersection_of: part_of UBERON:0000081 ! metanephros [Term] id: UBERON:0005125 name: metanephric proximal straight tubule def: "The metanephric proximal straight tubule is the part of the metanephric descending limb that extends from the metanephric proximal convoluted tubule to the metanephric descending thin tubule[GO]." [GO:0072230] comment: todo - place mammalian xrefs here rather than at parent is_a: UBERON:0001290 ! implied link automatically realized ! proximal straight tubule is_a: UBERON:0005146 ! implied link automatically realized ! metanephric nephron tubule relationship: part_of UBERON:0000081 intersection_of: UBERON:0001290 ! proximal straight tubule intersection_of: part_of UBERON:0000081 ! metanephros [Term] id: UBERON:0005126 name: metanephric S1 def: "The S1 portion is the initial portion of the metanephric proximal convoluted tubule and is responsible for avid reabsorption of water and solutes[GO]." [GO:0072231] is_a: UBERON:0004196 ! implied link automatically realized ! proximal convoluted tubule segment 1 relationship: part_of UBERON:0000081 intersection_of: UBERON:0004196 ! proximal convoluted tubule segment 1 intersection_of: part_of UBERON:0000081 ! metanephros [Term] id: UBERON:0005127 name: metanephric thick ascending limb def: "At the macula densa, the thick ascending limb connects to the distal convoluted tubule[GO]." [GO:0072233] is_a: UBERON:0001291 ! implied link automatically realized ! thick ascending limb of loop of Henle is_a: UBERON:0005129 ! implied link automatically realized ! metanephric distal tubule relationship: part_of UBERON:0000081 intersection_of: UBERON:0001291 ! thick ascending limb of loop of Henle intersection_of: part_of UBERON:0000081 ! metanephros [Term] id: UBERON:0005129 name: metanephric distal tubule alt_id: UBERON:0005150 def: "The metanephric distal tubule is a metanephric nephron tubule that begins at the metanephric macula densa and extends to the metanephric connecting tubule[GO]." [GO:0072235] is_a: UBERON:0004135 ! implied link automatically realized ! distal tubule is_a: UBERON:0005146 ! implied link automatically realized ! metanephric nephron tubule relationship: part_of UBERON:0000081 intersection_of: UBERON:0004135 ! distal tubule intersection_of: part_of UBERON:0000081 ! metanephros [Term] id: UBERON:0005130 name: metanephric loop of Henle def: "The metanephric loop of Henle is a metanephric nephron tubule that connects the proximal convoluted tubule to the distal convoluted tubule in the metanephros[GO]." [GO:0072236] is_a: UBERON:0001288 ! implied link automatically realized ! loop of Henle is_a: UBERON:0005146 ! implied link automatically realized ! metanephric nephron tubule relationship: part_of UBERON:0000081 intersection_of: UBERON:0001288 ! loop of Henle intersection_of: part_of UBERON:0000081 ! metanephros relationship: part_of UBERON:0004136 ! intermediate tubule [Term] id: UBERON:0005132 name: metanephric long nephron def: "Long nephrons are associated with juxtamedullary glomeruli and extend into the inner medulla in the metanephros[GO]." [GO:0072238] is_a: UBERON:0004194 ! implied link automatically realized ! long nephron is_a: UBERON:0005110 ! implied link automatically realized ! metanephric nephron relationship: part_of UBERON:0000081 intersection_of: UBERON:0004194 ! long nephron intersection_of: part_of UBERON:0000081 ! metanephros [Term] id: UBERON:0005133 name: metanephric glomerulus vasculature alt_id: UBERON:0005143 def: "The metanephric glomerulus vasculature is composed of the tubule structures that carry blood or lymph in the metanephric glomerulus[GO]." [GO:0072239] is_a: UBERON:0004190 ! implied link automatically realized ! glomerulus vasculature relationship: part_of UBERON:0000081 intersection_of: UBERON:0004190 ! glomerulus vasculature intersection_of: part_of UBERON:0000081 ! metanephros [Term] id: UBERON:0005134 name: metanephric nephron epithelium def: "The metanephric nephron epithelium is a tissue that covers the surface of a nephron in the metanephros[GO]." [GO:0072243] is_a: UBERON:0004211 ! implied link automatically realized ! nephron epithelium is_a: UBERON:0005108 ! implied link automatically realized ! metanephric epithelium relationship: part_of UBERON:0000081 intersection_of: UBERON:0004211 ! nephron epithelium intersection_of: part_of UBERON:0000081 ! metanephros relationship: surrounds UBERON:0001285 ! nephron [Term] id: UBERON:0005135 name: metanephric glomerular epithelium def: "A metanephric glomerular visceral epithelial cell is a specialized epithelial cell that contains 'feet' that interdigitate with the 'feet' of other glomerular epithelial cells in the metanephros[GO]." [GO:0072244] is_a: UBERON:0004188 ! implied link automatically realized ! glomerular epithelium is_a: UBERON:0005134 ! implied link automatically realized ! metanephric nephron epithelium relationship: part_of UBERON:0000081 intersection_of: UBERON:0004188 ! glomerular epithelium intersection_of: part_of UBERON:0000081 ! metanephros [Term] id: UBERON:0005136 name: metanephric glomerular endothelium def: "The metanephric glomerular endothelium is an epithelial tissue that covers the internal surfaces of the glomerulus of the metanephros[GO]." [GO:0072264] is_a: UBERON:0004189 ! implied link automatically realized ! glomerular endothelium is_a: UBERON:0005135 ! implied link automatically realized ! metanephric glomerular epithelium relationship: part_of UBERON:0000081 intersection_of: UBERON:0004189 ! glomerular endothelium intersection_of: part_of UBERON:0000081 ! metanephros [Term] id: UBERON:0005137 name: metanephric capsule alt_id: UBERON:0005112 def: "The metanephric capsule is the tough fibrous layer surrounding the metanephros, covered in a thick layer of perinephric adipose tissue. It provides some protection from trauma and damage[GO]." [GO:0072213] is_a: UBERON:0002015 ! implied link automatically realized ! kidney capsule is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0000081 intersection_of: UBERON:0002015 ! kidney capsule intersection_of: part_of UBERON:0000081 ! metanephros [Term] id: UBERON:0005139 name: metanephric long descending thin limb def: "The long descending limb starts in the inner stripe of the outer medulla and extends into the inner medulla[GO]." [GO:0072269] is_a: UBERON:0005100 ! implied link automatically realized ! long descending thin limb is_a: UBERON:0005134 ! implied link automatically realized ! metanephric nephron epithelium relationship: part_of UBERON:0000081 intersection_of: UBERON:0005100 ! long descending thin limb intersection_of: part_of UBERON:0000081 ! metanephros [Term] id: UBERON:0005140 name: metanephric short nephron def: "Short nephrons are associated with mid-cortical and superficial glomeruli, are situated entirely in the outer medulla, and have no thin ascending limb[GO]." [GO:0072270] is_a: UBERON:0004195 ! implied link automatically realized ! short nephron is_a: UBERON:0005110 ! implied link automatically realized ! metanephric nephron relationship: part_of UBERON:0000081 intersection_of: UBERON:0004195 ! short nephron intersection_of: part_of UBERON:0000081 ! metanephros [Term] id: UBERON:0005141 name: metanephric short descending thin limb def: "The metanephric short descending thin limb is the descending thin limb of a short nephron in the metanephros that has a squamous epithelial morphology[GO]." [GO:0072271] is_a: UBERON:0005099 ! implied link automatically realized ! short descending thin limb is_a: UBERON:0005134 ! implied link automatically realized ! metanephric nephron epithelium relationship: part_of UBERON:0000081 intersection_of: UBERON:0005099 ! short descending thin limb intersection_of: part_of UBERON:0000081 ! metanephros [Term] id: UBERON:0005144 name: metanephric glomerular capillary def: "This process pertains to the initial formation of a structure from unspecified parts[GO]." [GO:0072277] is_a: UBERON:0004212 ! implied link automatically realized ! glomerular capillary is_a: UBERON:0005135 ! implied link automatically realized ! metanephric glomerular epithelium is_a: UBERON:0005146 ! implied link automatically realized ! metanephric nephron tubule relationship: part_of UBERON:0000081 intersection_of: UBERON:0004212 ! glomerular capillary intersection_of: part_of UBERON:0000081 ! metanephros [Term] id: UBERON:0005145 name: metanephric comma-shaped body def: "The metanephric comma-shaped body is the precursor structure to the metanephric S-shaped body that contributes to the morphogenesis of a nephron in the metanephros[GO]." [GO:0072278] is_a: UBERON:0004198 ! implied link automatically realized ! comma-shaped body relationship: part_of UBERON:0000081 intersection_of: UBERON:0004198 ! comma-shaped body intersection_of: part_of UBERON:0000081 ! metanephros [Term] id: UBERON:0005146 name: metanephric nephron tubule alt_id: UBERON:0005128 alt_id: UBERON:0005152 def: "A metanephric nephron tubule is an epithelial tube that is part of the metanephric nephron, the functional part of the metanephros[GO]." [GO:0072282] is_a: UBERON:0001231 ! implied link automatically realized ! nephron tubule is_a: UBERON:0005106 ! implied link automatically realized ! metanephric tubule is_a: UBERON:0005134 ! implied link automatically realized ! metanephric nephron epithelium relationship: part_of UBERON:0000081 intersection_of: UBERON:0001231 ! nephron tubule intersection_of: part_of UBERON:0000081 ! metanephros relationship: develops_from UBERON:0003220 {source="ISBN:9780878932504"} ! metanephric mesenchyme [Term] id: UBERON:0005147 name: metanephric renal vesicle def: "The renal vesicle is the primordial structure of the metanephric nephron epithelium, and is formed by the condensation of mesenchymal cells[GO]." [GO:0072283] is_a: UBERON:0004209 ! implied link automatically realized ! renal vesicle is_a: UBERON:0005134 ! implied link automatically realized ! metanephric nephron epithelium relationship: part_of UBERON:0000081 intersection_of: UBERON:0004209 ! renal vesicle intersection_of: part_of UBERON:0000081 ! metanephros [Term] id: UBERON:0005148 name: metanephric S-shaped body def: "The metanephric S-shaped body is the successor of the metanephric comma-shaped body that contributes to the morphogenesis of a nephron in the metanephros[GO]." [GO:0072284] is_a: UBERON:0005332 ! implied link automatically realized ! mesonephric S-shaped body relationship: part_of UBERON:0000081 intersection_of: UBERON:0004199 ! S-shaped body intersection_of: part_of UBERON:0000081 ! metanephros relationship: part_of UBERON:0005322 {notes="todo - automate"} ! mesonephric nephron [Term] id: UBERON:0005149 name: metanephric connecting tubule def: "The metanephric connecting tubule is a tubular segment of the metanephric nephron; it connects the distal convoluted tubule to the collecting duct in the metanephros[GO]." [GO:0072286] is_a: UBERON:0005097 ! implied link automatically realized ! connecting tubule is_a: UBERON:0005146 ! implied link automatically realized ! metanephric nephron tubule relationship: part_of UBERON:0000081 intersection_of: UBERON:0005097 ! connecting tubule intersection_of: part_of UBERON:0000081 ! metanephros [Term] id: UBERON:0005151 name: metanephric proximal tubule alt_id: UBERON:0005131 def: "The metanephric proximal tubule is a metanephric nephron tubule that connects Bowman's capsule to the descending thin limb of the loop of Henle in the metanephros. It has a brush border epithelial morphology[GO]." [GO:0072288] is_a: UBERON:0004134 ! implied link automatically realized ! proximal tubule is_a: UBERON:0005146 ! implied link automatically realized ! metanephric nephron tubule relationship: part_of UBERON:0000081 intersection_of: UBERON:0004134 ! proximal tubule intersection_of: part_of UBERON:0000081 ! metanephros [Term] id: UBERON:0005153 name: epithelial bud def: "A bud is a protrusion that forms from an epithelial sheet by localized folding." [GO:0060572] is_a: UBERON:0005157 ! epithelial fold [Term] id: UBERON:0005154 name: epithelial cord comment: TODO - add superclass of developing structure xref: EHDAA2:0004052 is_a: UBERON:0000483 ! epithelium [Term] id: UBERON:0005155 name: open tracheal system def: "An open tracheal system is a respiratory system, a branched network of epithelial tubes that supplies oxygen to target tissues via spiracles. An example of this is found in Drosophila melanogaster." [GO:0007424] subset: uberon_slim synonym: "invertebrate tracheal system" EXACT [] synonym: "open tracheal system" EXACT [] synonym: "tracheal system" BROAD SENSU [FBbt:00005024] xref: BTO:0003870 xref: FBbt:00005024 xref: SPD:0000427 xref: TADS:0000043 is_a: UBERON:0000467 ! anatomical system is_a: UBERON:0001004 ! implied link automatically realized ! respiratory system [Term] id: UBERON:0005156 name: reproductive structure def: "An anatomical structure that is part of the reproductive system." [GOC:cjm] synonym: "reproductive system structure" EXACT [] is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0000990 intersection_of: UBERON:0000061 ! anatomical structure intersection_of: part_of UBERON:0000990 ! reproductive system [Term] id: UBERON:0005157 name: epithelial fold def: "An epithelial sheet bent on a linear axis." [GO:0060571] is_a: UBERON:0000483 ! epithelium [Term] id: UBERON:0005158 name: parenchyma of central nervous system def: "A parenchyma that is part of a central nervous system [Obol]." [OBOL:automatic] synonym: "central nervous system parenchyma" EXACT [OBOL:automatic] synonym: "CNS parenchyma" EXACT [OBOL:automatic] synonym: "parenchyma of central nervous system" EXACT [] synonym: "parenchyma of CNS" EXACT [OBOL:automatic] is_a: UBERON:0000353 ! implied link automatically realized ! parenchyma is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001017 intersection_of: UBERON:0000353 ! parenchyma intersection_of: part_of UBERON:0001017 ! central nervous system [Term] id: UBERON:0005159 name: pyramid of medulla oblongata def: "The anterior or ventral portion of the medulla oblongata is named the pyramid and lies between the anterior median fissure and the antero-lateral sulcus. Its upper end is slightly constricted, and between it and the pons the fibers of the abducent nerve emerge; a little below the pons it becomes enlarged and prominent, and finally tapers into the anterior funiculus of the medulla spinalis, with which, at first sight, it appears to be directly continuous[WP]." [Wikipedia:Pyramid_(brainstem)] synonym: "lobule VIII of Larsell" EXACT [FMA:75254] synonym: "medullary pyramid" EXACT [FMA:75254] synonym: "pyramid of medulla" EXACT [FMA:75254] synonym: "pyramid of medulla oblongata" EXACT [Wikipedia:Pyramid_(brainstem)] xref: BM:Me-Py xref: FMA:75254 xref: SCTID:9535007 is_a: UBERON:0002678 ! regional part of medulla oblongata disjoint_from: UBERON:0004200 ! kidney pyramid relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0005160 name: vestigial structure is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0005161 name: pelvic spur def: "Pelvic spurs are the externally visible portion of the vestigial remnants of legs found on each side of the vent in primitive snakes, such as boas and pythons[1]. The remnants of a pelvis and femur, which have no connection with the spine, simply 'float' in the muscle mass[1]. The femur protrudes from the snake's body and is covered by a corneal spur, which resembles a claw[1]. Males' spurs are generally longer and more pointed than females', and are used for clasping and tickling during courtship and mating[2], as well as combat with other males in some species" [Wikipedia:Pelvic_spur] synonym: "anal spur" EXACT [Wikipedia:Anal_spur] is_a: UBERON:0000026 ! appendage is_a: UBERON:0005160 ! vestigial structure [Term] id: UBERON:0005162 name: multi-cell-component structure def: "A structure consisting of multiple cell components but which is not itself a cell and does not have (complete) cells as a part." [CARO:0001000] subset: upper_level xref: AAO:0011000 xref: CARO:0001000 xref: FBbt:00007060 is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0005164 name: ascending limb of loop of Henle def: "the distal part of the loop of Henle that is impermeable to water and actively pumps sodium out of the filtrate to generate the hypertonic interstitium that drives countercurrent exchange; it consists of an initial very thin segment lined by simple squamous epithelium followed by a distal thick segment lined by simple cuboidal epithelium[MP]." [MP:0011342, Wikipedia:Ascending_limb_of_loop_of_Henle] comment: TODO: thick/thin check. Also relationship to distal tubule. We need a home for MA:0002634-renal straight tubule subset: uberon_slim synonym: "ascending limb" BROAD [] synonym: "ascending limb of Henle's loop" EXACT [] synonym: "distal straight tubule" RELATED [] synonym: "loop of Henle ascending limb" EXACT [MP:0011342] xref: FMA:17717 xref: MA:0001676 xref: ncithesaurus:Ascending_Limb_of_the_Henle_s_Loop xref: SCTID:245434005 is_a: UBERON:0004135 ! distal tubule relationship: part_of UBERON:0001288 ! loop of Henle [Term] id: UBERON:0005167 name: papillary duct def: "The terminal portions of the medullary collecting ducts are the papillary ducts, which end at the renal papilla and empty into a minor calyx." [Encyclopedia:http\://encyclopedia.thefreedictionary.com/] synonym: "Bellini's duct" RELATED [MP:0011331] synonym: "duct of Bellini" RELATED [] synonym: "papillary duct of kidney" EXACT [SCTID:110623009] xref: BTO:0004540 xref: MA:0001646 xref: SCTID:110623009 is_a: UBERON:0001232 ! collecting duct of renal tubule [Term] id: UBERON:0005168 name: interlobular vein def: "The venae stellatae join to form the interlobular veins, which pass inward between the rays, receive branches from the plexuses around the convoluted tubules, and, having arrived at the bases of the renal pyramids, join with the venae rectae" [Wikipedia:Interlobular_veins] synonym: "venae interlobulares renis" EXACT [FMA:71634, FMA:TA] xref: EMAPA:28218 xref: FMA:71634 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/27/Gray1128.png/200px-Gray1128.png xref: MA:0002594 is_a: UBERON:0001638 ! vein is_a: UBERON:0005269 ! implied link automatically realized ! renal cortex vein relationship: part_of UBERON:0001225 ! cortex of kidney [Term] id: UBERON:0005169 name: interstitial tissue def: "connective tissue between the cellular elements of a structure." [http://medical-dictionary.thefreedictionary.com/tissue] comment: todo - make connective tissue synonym: "interstitium" EXACT [] xref: FMA:86301 xref: SCTID:85293002 is_a: UBERON:0003891 ! stroma [Term] id: UBERON:0005170 name: ovary stratum granulosum subset: vertebrate_core synonym: "granulosa cell layer of ovarian follicle" EXACT [FMA:18660] synonym: "membrana granulosa of ovarian follicle" EXACT [FMA:18660] synonym: "stratum granulosum of ovarian follicle" EXACT [FMA:18660] xref: FMA:18660 xref: MA:0001460 xref: SCTID:258971005 xref: ZFA:0001112 is_a: UBERON:0000158 ! membranous layer is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0001305 ! ovarian follicle [Term] id: UBERON:0005171 name: hepatic duct def: "The hepatic duct is the duct that leads from the liver to the bile duct[GO]. A duct that carries bile from the liver to the small intestine[ZFA]." [GO:0061011] comment: TODO - MA distinguishes between bile duct, hepatic duct, common bile duct and common hepatic duct. in FMA hepatic duct and common hepatic duct are the same subset: vertebrate_core xref: EHDAA:3049 xref: EHDAA2:0000741 xref: EMAPA:16843 xref: EMAPA:18672 xref: galen:HepaticDuct xref: MA:0000357 xref: ncithesaurus:Hepatic_Duct xref: OG:0000219 xref: OpenCyc:Mx4rvWo8WJwpEbGdrcN5Y29ycA xref: SCTID:245399002 xref: TAO:0001100 xref: ZFA:0001100 is_a: UBERON:0002394 ! bile duct relationship: continuous_with UBERON:0002107 ! liver relationship: part_of UBERON:0001173 ! biliary tree [Term] id: UBERON:0005172 name: abdomen organ def: "An organ that is part of an abdomen [Obol]." [OBOL:automatic] subset: organ_slim xref: MA:0000522 xref: SCTID:272631008 is_a: UBERON:0005173 ! implied link automatically realized ! abdominal segment organ relationship: part_of UBERON:0000916 intersection_of: UBERON:0000062 ! organ intersection_of: part_of UBERON:0000916 ! abdomen [Term] id: UBERON:0005173 name: abdominal segment organ xref: MA:0000529 is_a: UBERON:0005177 ! implied link automatically realized ! trunk organ relationship: part_of UBERON:0002417 intersection_of: UBERON:0000062 ! organ intersection_of: part_of UBERON:0002417 ! abdominal segment of trunk relationship: part_of UBERON:0002417 ! abdominal segment of trunk [Term] id: UBERON:0005174 name: back organ def: "An organ that is part of a back [Obol]." [OBOL:automatic] subset: organ_slim xref: MA:0001901 is_a: UBERON:0005177 ! implied link automatically realized ! trunk organ relationship: part_of UBERON:0001137 intersection_of: UBERON:0000062 ! organ intersection_of: part_of UBERON:0001137 ! back [Term] id: UBERON:0005175 name: chest organ def: "An organ that is part of a chest [Obol]." [OBOL:automatic] subset: organ_slim xref: MA:0000552 is_a: UBERON:0005181 ! implied link automatically realized ! thoracic segment organ relationship: part_of UBERON:0001443 intersection_of: UBERON:0000062 ! organ intersection_of: part_of UBERON:0001443 ! chest [Term] id: UBERON:0005176 name: tooth enamel organ def: "Epithelial cells surrounding the dental papilla and differentiated into three layers: the inner enamel epithelium, consisting of ameloblasts which eventually form the enamel, and the enamel pulp and external enamel epithelium, both of which atrophy and disappear before and upon eruption of the tooth, respectively[MESH]." [MESH:A.14.254.900.720.265, Wikipedia:Enamel_organ] comment: A cellular aggregation seen in histologic sections of a developing tooth. It lies above a condensation of ectomesenchymal cells called the dental papilla. Historically, enamel organ has been the term to describe this structure, but it was attempted unsuccessfully in recent years to change the name to dental organ in order to better represent its multiple functions apart from enamel formation[WP] subset: vertebrate_core synonym: "dental organ" EXACT [ZFA:0005138] synonym: "enamel organ" EXACT [MP:0010747] xref: BTO:0001722 xref: MA:0001604 xref: MESH:A.14.254.900.720.265 xref: SCTID:362863002 xref: ZFA:0005138 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0000924 {source="BTO"} ! ectoderm is_a: UBERON:0005087 {source="BTO"} ! tooth placode relationship: develops_from UBERON:0005087 {source="ZFA"} ! tooth placode relationship: develops_from UBERON:0008281 ! tooth bud [Term] id: UBERON:0005177 name: trunk organ def: "An organ that is part of a trunk [Obol]." [OBOL:automatic] subset: organ_slim xref: MA:0000516 is_a: UBERON:0000062 ! implied link automatically realized ! organ relationship: part_of UBERON:0002100 intersection_of: UBERON:0000062 ! organ intersection_of: part_of UBERON:0002100 ! trunk [Term] id: UBERON:0005178 name: thoracic cavity organ def: "An organ that is part of a thoracic cavity [Obol]." [OBOL:automatic] xref: MA:0000557 is_a: UBERON:0005181 ! implied link automatically realized ! thoracic segment organ relationship: part_of UBERON:0002224 intersection_of: UBERON:0000062 ! organ intersection_of: part_of UBERON:0002224 ! thoracic cavity [Term] id: UBERON:0005179 name: pelvis organ def: "An organ that is part of the pelvic region[Obol]." [OBOL:automatic] subset: organ_slim xref: MA:0000543 is_a: UBERON:0005173 ! implied link automatically realized ! abdominal segment organ relationship: part_of UBERON:0002355 intersection_of: UBERON:0000062 ! organ intersection_of: part_of UBERON:0002355 ! pelvis [Term] id: UBERON:0005180 name: lymph organ def: "An organ that is part of a lymph [Obol]." [OBOL:automatic] xref: MA:0000747 is_obsolete: true [Term] id: UBERON:0005181 name: thoracic segment organ synonym: "upper body organ" RELATED [MA:0000563] xref: MA:0000563 is_a: UBERON:0005177 ! implied link automatically realized ! trunk organ relationship: part_of UBERON:0000915 intersection_of: UBERON:0000062 ! organ intersection_of: part_of UBERON:0000915 ! thoracic segment of trunk relationship: part_of UBERON:0000915 ! thoracic segment of trunk [Term] id: UBERON:0005184 name: hair medulla def: "Innermost layer of the hair shaft." [Wikipedia:Medulla_(hair)] synonym: "medulla of hair shaft" RELATED [BTO:0004671] xref: BTO:0004671 xref: MA:0000158 xref: SCTID:318929009 is_a: UBERON:0000958 ! implied link automatically realized ! medulla is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001037 intersection_of: UBERON:0000958 ! medulla intersection_of: part_of UBERON:0001037 ! strand of hair [Term] id: UBERON:0005185 name: renal medulla collecting duct def: "A collecting duct of renal tubule that is part of a renal medulla [Obol]." [OBOL:automatic] xref: MA:0002935 is_a: UBERON:0001232 ! implied link automatically realized ! collecting duct of renal tubule relationship: part_of UBERON:0000362 intersection_of: UBERON:0001232 ! collecting duct of renal tubule intersection_of: part_of UBERON:0000362 ! renal medulla [Term] id: UBERON:0005186 name: outer renal medulla collecting duct def: "A collecting duct of renal tubule that is part of a outer medulla of kidney [Obol]." [OBOL:automatic] xref: MA:0002599 is_a: UBERON:0005185 ! implied link automatically realized ! renal medulla collecting duct relationship: part_of UBERON:0001293 intersection_of: UBERON:0001232 ! collecting duct of renal tubule intersection_of: part_of UBERON:0001293 ! outer medulla of kidney [Term] id: UBERON:0005187 name: inner renal medulla collecting duct def: "A collecting duct of renal tubule that is part of a inner medulla of kidney [Obol]." [OBOL:automatic] synonym: "papillary collecting duct" RELATED [MA:0002598] xref: MA:0002598 is_a: UBERON:0005185 ! implied link automatically realized ! renal medulla collecting duct relationship: part_of UBERON:0001294 intersection_of: UBERON:0001232 ! collecting duct of renal tubule intersection_of: part_of UBERON:0001294 ! inner medulla of kidney [Term] id: UBERON:0005188 name: caput epididymis is_obsolete: true replaced_by: UBERON:0004358 [Term] id: UBERON:0005189 name: corpus epididymis is_obsolete: true replaced_by: UBERON:0004359 [Term] id: UBERON:0005190 name: cauda epididymis is_obsolete: true replaced_by: UBERON:0004360 [Term] id: UBERON:0005191 name: cervical artery def: "An artery that is part of a uterine cervix [Obol]." [OBOL:automatic] xref: MA:0001936 xref: ncithesaurus:Cervical_Artery is_a: UBERON:0002493 ! implied link automatically realized ! uterine artery is_a: UBERON:0004801 ! implied link automatically realized ! cervix epithelium relationship: part_of UBERON:0000002 intersection_of: UBERON:0001637 ! artery intersection_of: part_of UBERON:0000002 ! uterine cervix [Term] id: UBERON:0005192 name: deferent duct artery def: "An artery that is part of a vas deferens [Obol]." [OBOL:automatic] xref: MA:0001940 is_a: UBERON:0001637 ! implied link automatically realized ! artery is_a: UBERON:0004806 ! implied link automatically realized ! vas deferens epithelium relationship: part_of UBERON:0001000 intersection_of: UBERON:0001637 ! artery intersection_of: part_of UBERON:0001000 ! vas deferens [Term] id: UBERON:0005193 name: ethmoidal artery def: "An artery that is part of a ethmoid [Obol]." [OBOL:automatic] xref: MA:0001949 xref: ncithesaurus:Ethmoidal_Artery xref: SCTID:244222007 is_a: UBERON:0001637 ! implied link automatically realized ! artery is_a: UBERON:0003496 ! implied link automatically realized ! head blood vessel is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0005744 ! implied link automatically realized ! cranial conduit relationship: part_of UBERON:0001679 intersection_of: UBERON:0001637 ! artery intersection_of: part_of UBERON:0001679 ! ethmoid [Term] id: UBERON:0005194 name: thoracic vein def: "A vein that is part of a thorax [Obol]." [OBOL:automatic] xref: MA:0002235 xref: ncithesaurus:Thoracic_Vein xref: SCTID:281472008 is_a: UBERON:0001638 ! implied link automatically realized ! vein is_a: UBERON:0003834 ! implied link automatically realized ! thoracic segment blood vessel relationship: part_of UBERON:0000915 intersection_of: UBERON:0001638 ! vein intersection_of: part_of UBERON:0000915 ! thoracic segment of trunk [Term] id: UBERON:0005195 name: deferent duct vein def: "A vein that is part of a vas deferens [Obol]." [OBOL:automatic] xref: MA:0002100 is_a: UBERON:0001638 ! implied link automatically realized ! vein is_a: UBERON:0004806 ! implied link automatically realized ! vas deferens epithelium relationship: part_of UBERON:0001000 intersection_of: UBERON:0001638 ! vein intersection_of: part_of UBERON:0001000 ! vas deferens [Term] id: UBERON:0005196 name: spleen germinal center def: "A portion of secondary nodular lymphoid tissue that is part of a spleen [Obol]." [OBOL:automatic] comment: todo - check xref: MA:0000764 xref: ncithesaurus:Spleen_Germinal_Center is_a: UBERON:0001249 ! implied link automatically realized ! lymphoid nodule of spleen is_a: UBERON:0001745 ! implied link automatically realized ! secondary nodular lymphoid tissue relationship: part_of UBERON:0002106 intersection_of: UBERON:0001745 ! secondary nodular lymphoid tissue intersection_of: part_of UBERON:0002106 ! spleen relationship: part_of UBERON:0001959 {source="MA"} ! white pulp of spleen [Term] id: UBERON:0005197 name: segmental spinal nerve def: "A spinal nerve that is part of a organismal segment [Obol]." [OBOL:automatic] xref: EHDAA:3778 xref: EHDAA2:0001822 xref: EMAPA:16990 xref: EMAPA:25149 xref: MA:0000234 xref: OG:0000920 is_a: UBERON:0001780 ! implied link automatically realized ! spinal nerve relationship: part_of UBERON:0000914 intersection_of: UBERON:0001780 ! spinal nerve intersection_of: part_of UBERON:0000914 ! organismal segment [Term] id: UBERON:0005198 name: coat hair bulb is_obsolete: true [Term] id: UBERON:0005199 name: cervical mammary gland xref: MA:0000789 is_a: UBERON:0001911 ! implied link automatically realized ! mammary gland relationship: part_of UBERON:0005434 intersection_of: UBERON:0001911 ! mammary gland intersection_of: part_of UBERON:0005434 ! cervical region [Term] id: UBERON:0005200 name: thoracic mammary gland def: "A lactiferous gland that is located in the thoracic region/breast." [UBERON:cjm, Wikipedia:Mammary_gland#Other_mammals] comment: Most primates have one pair of mammary glands, which are thoracic. synonym: "anterior mammary gland" RELATED [Wikipedia:Mammary_gland#Other_mammals] synonym: "breast mammary gland" EXACT [] synonym: "lactiferous gland" BROAD SENSU [FMA:62088] synonym: "mammary gland" BROAD SENSU [FMA:62088] xref: EHDAA:6524 xref: EHDAA2:0001056 xref: FMA:62088 xref: MA:0000797 is_a: UBERON:0001911 ! implied link automatically realized ! mammary gland is_a: UBERON:0005175 ! implied link automatically realized ! chest organ relationship: part_of UBERON:0000915 intersection_of: UBERON:0001911 ! mammary gland intersection_of: part_of UBERON:0000915 ! thoracic segment of trunk relationship: part_of UBERON:0000310 {source="BTO"} ! breast [Term] id: UBERON:0005201 name: cervical trunk comment: was obsolete as it was defined incorrectly. See Fig97 of The Anatomy of the Laboratory Mouse. May be included in future versions of this ontology that include more detailed relationships and comparisons of the arterial system xref: http://www.informatics.jax.org/cookbook/figures/figure97.shtml xref: MA:0001937 is_obsolete: true [Term] id: UBERON:0005202 name: distal straight tubule macula densa def: "A macula densa that is part of an ascending limb of loop of Henle [Obol]." [OBOL:automatic] comment: todo - unify terminology - check DST = TAL? Note EMAPA class appears to refer to this segment xref: EMAPA:28399 xref: MA:0002604 is_a: UBERON:0002335 ! implied link automatically realized ! macula densa is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001291 intersection_of: UBERON:0002335 ! macula densa intersection_of: part_of UBERON:0001291 ! thick ascending limb of loop of Henle relationship: part_of UBERON:0001291 {source="MA"} ! thick ascending limb of loop of Henle relationship: part_of UBERON:0006853 {source="MA"} ! renal cortex tubule [Term] id: UBERON:0005203 name: trachea gland def: "A gland that is part of a submucosa of trachea [Obol]." [OBOL:automatic] subset: organ_slim synonym: "glandula trachealis" EXACT [FMA:7473] synonym: "tubular seromucous gland of trachea" EXACT [FMA:7473] xref: FMA:7473 xref: MA:0002937 xref: SCTID:197423006 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002530 ! implied link automatically realized ! gland is_a: UBERON:0005178 ! implied link automatically realized ! thoracic cavity organ relationship: part_of UBERON:0002202 intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0002202 ! submucosa of trachea [Term] id: UBERON:0005204 name: larynx submucosa gland def: "A gland that is part of a larynx submucosa [Obol]." [OBOL:automatic] subset: organ_slim xref: MA:0002729 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002530 ! implied link automatically realized ! gland relationship: part_of UBERON:0004778 intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0004778 ! larynx submucosa [Term] id: UBERON:0005205 name: vagina stroma def: "A stroma that is part of a vagina [Obol]." [OBOL:automatic] xref: MA:0002737 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003891 ! implied link automatically realized ! stroma is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0000996 intersection_of: UBERON:0003891 ! stroma intersection_of: part_of UBERON:0000996 ! vagina [Term] id: UBERON:0005206 name: choroid plexus stroma def: "A stroma that is part of a choroid plexus [Obol]." [OBOL:automatic] xref: MA:0000825 is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain is_a: UBERON:0003566 ! implied link automatically realized ! head connective tissue is_a: UBERON:0003891 ! implied link automatically realized ! stroma relationship: part_of UBERON:0001886 intersection_of: UBERON:0003891 ! stroma intersection_of: part_of UBERON:0001886 ! choroid plexus [Term] id: UBERON:0005207 name: tonsil capsule def: "A capsule that is part of a tonsil [Obol]." [OBOL:automatic] xref: MA:0000776 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0003893 ! implied link automatically realized ! capsule relationship: part_of UBERON:0002372 intersection_of: UBERON:0003893 ! capsule intersection_of: part_of UBERON:0002372 ! tonsil [Term] id: UBERON:0005208 name: right atrium valve def: "A valve that is part of a right atrium [Obol]." [OBOL:automatic] xref: EHDAA2:0000302 xref: EMAPA:17327 xref: MA:0001871 is_a: UBERON:0003978 ! implied link automatically realized ! valve is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0002078 intersection_of: UBERON:0003978 ! valve intersection_of: part_of UBERON:0002078 ! right atrium [Term] id: UBERON:0005211 name: renal medulla interstitium def: "A portion of interstitial tissue that is part of a renal medulla [Obol]." [OBOL:automatic] synonym: "kidney medulla interstitium" EXACT [MA:0002619] xref: EMAPA:18326 xref: MA:0002619 is_a: UBERON:0005215 ! implied link automatically realized ! kidney interstitium relationship: part_of UBERON:0000362 intersection_of: UBERON:0005169 ! interstitial tissue intersection_of: part_of UBERON:0000362 ! renal medulla relationship: part_of UBERON:0005215 {source="MA"} ! kidney interstitium [Term] id: UBERON:0005212 name: testis interstitial tissue def: "The male gonad containing two functional parts: the SEMINIFEROUS TUBULES for the production and transport of male germ cells (SPERMATOGENESIS) and the interstitial compartment containing LEYDIG CELLS that produce ANDROGENS.." [MESH:A.05.360.444.849] synonym: "interstitium of testis" EXACT [UBERON:cjm] synonym: "interstitium of the testis" EXACT [EMAPA:18687] synonym: "testis - interstitial" EXACT [UBERON:cjm] synonym: "testis interstitium" EXACT [UBERON:cjm] xref: EMAPA:18687 xref: MA:0002713 xref: SCTID:362280005 is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure is_a: UBERON:0005169 ! implied link automatically realized ! interstitial tissue relationship: part_of UBERON:0000473 intersection_of: UBERON:0005169 ! interstitial tissue intersection_of: part_of UBERON:0000473 ! testis [Term] id: UBERON:0005213 name: outer renal medulla interstitium def: "A portion of interstitial tissue that is part of a outer medulla of kidney [Obol]." [OBOL:automatic] xref: MA:0002621 is_a: UBERON:0005211 ! implied link automatically realized ! renal medulla interstitium relationship: part_of UBERON:0001293 intersection_of: UBERON:0005169 ! interstitial tissue intersection_of: part_of UBERON:0001293 ! outer medulla of kidney [Term] id: UBERON:0005214 name: inner renal medulla interstitium def: "A portion of interstitial tissue that is part of a inner medulla of kidney [Obol]." [OBOL:automatic] xref: MA:0002620 is_a: UBERON:0005211 ! implied link automatically realized ! renal medulla interstitium relationship: part_of UBERON:0001294 intersection_of: UBERON:0005169 ! interstitial tissue intersection_of: part_of UBERON:0001294 ! inner medulla of kidney [Term] id: UBERON:0005215 name: kidney interstitium def: "A portion of interstitial tissue that is part of a kidney [Obol]." [OBOL:automatic] xref: MA:0002616 is_a: UBERON:0003567 ! implied link automatically realized ! abdomen connective tissue is_a: UBERON:0005169 ! implied link automatically realized ! interstitial tissue is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0002113 intersection_of: UBERON:0005169 ! interstitial tissue intersection_of: part_of UBERON:0002113 ! kidney [Term] id: UBERON:0005216 name: optic eminence surface ectoderm def: "An external ectoderm that is part of a optic eminence [Obol]." [OBOL:automatic] xref: EHDAA2:0001311 xref: EMAPA:16539 xref: OG:0000520 is_a: UBERON:0000076 ! implied link automatically realized ! external ectoderm relationship: part_of UBERON:0004348 intersection_of: UBERON:0000076 ! external ectoderm intersection_of: part_of UBERON:0004348 ! optic eminence [Term] id: UBERON:0005217 name: midbrain subarachnoid space def: "A subarachnoid space that is part of a midbrain [Obol]." [OBOL:automatic] xref: EMAPA:19055 xref: OG:0001304 is_a: UBERON:0000315 ! implied link automatically realized ! subarachnoid space relationship: part_of UBERON:0001891 intersection_of: UBERON:0000315 ! subarachnoid space intersection_of: part_of UBERON:0001891 ! midbrain [Term] id: UBERON:0005218 name: diencephalon subarachnoid space def: "A subarachnoid space that is part of a diencephalon [Obol]." [OBOL:automatic] xref: EMAPA:19053 xref: EMAPA:25079 xref: OG:0001302 is_a: UBERON:0000315 ! implied link automatically realized ! subarachnoid space relationship: part_of UBERON:0001894 intersection_of: UBERON:0000315 ! subarachnoid space intersection_of: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0005219 name: hindbrain subarachnoid space def: "A subarachnoid space that is part of a hindbrain [Obol]." [OBOL:automatic] xref: EMAPA:18211 xref: OG:0001303 is_a: UBERON:0000315 ! implied link automatically realized ! subarachnoid space relationship: part_of UBERON:0002028 intersection_of: UBERON:0000315 ! subarachnoid space intersection_of: part_of UBERON:0002028 ! hindbrain [Term] id: UBERON:0005220 name: pancreas head parenchyma def: "A parenchyma that is part of a head of pancreas [Obol]." [OBOL:automatic] xref: OG:0000838 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000353 ! implied link automatically realized ! parenchyma relationship: part_of UBERON:0001069 intersection_of: UBERON:0000353 ! parenchyma intersection_of: part_of UBERON:0001069 ! head of pancreas [Term] id: UBERON:0005221 name: liver right lobe parenchyma def: "A parenchyma that is part of a right lobe of liver [Obol]." [OBOL:automatic] synonym: "parenchyma of right lobe of liver" EXACT [FMA:71657] xref: EHDAA2:0001010 xref: EMAPA:18317 xref: FMA:71657 xref: OG:0000840 is_a: UBERON:0001280 ! implied link automatically realized ! liver parenchyma relationship: part_of UBERON:0001114 intersection_of: UBERON:0000353 ! parenchyma intersection_of: part_of UBERON:0001114 ! right lobe of liver [Term] id: UBERON:0005222 name: liver left lobe parenchyma def: "A parenchyma that is part of a left lobe of liver [Obol]." [OBOL:automatic] synonym: "parenchyma of left lobe of liver" EXACT [FMA:71658] xref: EHDAA2:0001002 xref: EMAPA:18310 xref: FMA:71658 xref: OG:0000839 is_a: UBERON:0001280 ! implied link automatically realized ! liver parenchyma relationship: part_of UBERON:0001115 intersection_of: UBERON:0000353 ! parenchyma intersection_of: part_of UBERON:0001115 ! left lobe of liver [Term] id: UBERON:0005223 name: pancreas body parenchyma def: "A parenchyma that is part of a body of pancreas [Obol]." [OBOL:automatic] xref: EHDAA2:0001370 xref: OG:0000837 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000353 ! implied link automatically realized ! parenchyma relationship: part_of UBERON:0001150 intersection_of: UBERON:0000353 ! parenchyma intersection_of: part_of UBERON:0001150 ! body of pancreas [Term] id: UBERON:0005224 name: pancreas tail parenchyma def: "A parenchyma that is part of a tail of pancreas [Obol]." [OBOL:automatic] xref: EHDAA2:0001392 xref: OG:0000469 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000353 ! implied link automatically realized ! parenchyma relationship: part_of UBERON:0001151 intersection_of: UBERON:0000353 ! parenchyma intersection_of: part_of UBERON:0001151 ! tail of pancreas [Term] id: UBERON:0005225 name: upper leg epithelium def: "An epithelium that is part of a hindlimb stylopod [Obol]." [OBOL:automatic] xref: EHDAA2:0002131 xref: EMAPA:17500 xref: OG:0001041 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0000376 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000376 ! hindlimb stylopod [Term] id: UBERON:0005226 name: foot digit epithelium def: "An epithelium that is part of a toe [Obol]." [OBOL:automatic] xref: OG:0001031 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001466 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001466 ! foot digit [Term] id: UBERON:0005227 name: hand digit epithelium def: "An epithelium that is part of a finger [Obol]." [OBOL:automatic] xref: EHDAA2:0000406 xref: OG:0001032 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0002389 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002389 ! hand digit [Term] id: UBERON:0005228 name: upper arm epithelium def: "An epithelium that is part of a forelimb stylopod [Obol]." [OBOL:automatic] xref: EHDAA2:0002113 xref: EMAPA:17425 xref: OG:0000990 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0003822 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0003822 ! forelimb stylopod [Term] id: UBERON:0005229 name: lower leg epithelium def: "An epithelium that is part of a lower leg [Obol]." [OBOL:automatic] xref: EHDAA2:0001031 xref: EMAPA:17497 xref: OG:0001050 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0003823 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0003823 ! hindlimb zeugopod [Term] id: UBERON:0005230 name: fundus epithelium comment: obsoleted due to confusion between ocular fundus and other types of fundus is_obsolete: true [Term] id: UBERON:0005233 name: medial-nasal process ectoderm def: "An ectoderm that is part of a medial nasal prominence [Obol]." [OBOL:automatic] xref: EHDAA2:0001078 xref: EMAPA:16809 xref: OG:0000803 is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium is_a: UBERON:0000924 ! implied link automatically realized ! ectoderm is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0004068 intersection_of: UBERON:0000924 ! ectoderm intersection_of: part_of UBERON:0004068 ! medial nasal prominence relationship: develops_from UBERON:0000076 {source="EHDAA2"} ! external ectoderm [Term] id: UBERON:0005234 name: optic eminence ectoderm def: "An ectoderm that is part of a optic eminence [Obol]." [OBOL:automatic] xref: EHDAA:940 xref: EHDAA2:0001309 xref: EMAPA:16323 xref: OG:0001105 is_a: UBERON:0000924 ! implied link automatically realized ! ectoderm relationship: part_of UBERON:0004348 intersection_of: UBERON:0000924 ! ectoderm intersection_of: part_of UBERON:0004348 ! optic eminence [Term] id: UBERON:0005236 name: osseus labyrinth vestibule def: "A small, oval, bony chamber of the labyrinth. The vestibule contains the utricle and saccule, organs which are part of the balancing apparatus of the ear." [BTO:0003382, Wikipedia:Vestibule_of_the_ear] synonym: "bony labyrinth vestibule" EXACT [] synonym: "inner ear vestibule" RELATED [BTO:0003382] synonym: "inner ear vestibulum" EXACT [BTO:0003382] synonym: "osseous labyrinth vestibule" EXACT [Obol:automatic] synonym: "vestibular apparatus" RELATED [GAID:881] synonym: "vestibule" BROAD [XAO:0000199] synonym: "vestibule of bony labyrinth" EXACT [FMA:60183] xref: AAO:0000984 xref: BTO:0003382 xref: EV:0100366 xref: FMA:60183 xref: GAID:881 xref: MA:0001185 xref: MESH:A.09.246.631.909 xref: ncithesaurus:Vestibule xref: OG:0001220 xref: SCTID:181188003 xref: XAO:0000199 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure disjoint_from: UBERON:0001349 ! vestibule relationship: part_of UBERON:0001839 ! bony labyrinth [Term] id: UBERON:0005238 name: tensor tympani muscle def: "A muscle organ that is part of a tensor tympani [Obol]." [OBOL:automatic] xref: EHDAA2:0002002 xref: EMAPA:18587 xref: MESH:A.02.633.567.975 xref: OG:0000698 xref: SCTID:244779001 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002376 ! implied link automatically realized ! muscle of head relationship: part_of UBERON:0001600 intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0001600 ! tensor tympani [Term] id: UBERON:0005239 name: basal plate metencephalon xref: EHDAA2:0001154 xref: EMAPA:17078 xref: OG:0000320 is_a: UBERON:0004064 ! basal plate [Term] id: UBERON:0005240 name: basal plate medulla oblongata xref: EHDAA2:0001093 xref: EMAPA:17557 xref: OG:0000324 is_a: UBERON:0004064 ! basal plate [Term] id: UBERON:0005241 name: apical ectodermal ridge forelimb def: "A forelimb that is part of an apical ectodermal ridge [Obol]." [OBOL:automatic] xref: OG:0001064 is_obsolete: true [Term] id: UBERON:0005242 name: apical ectodermal ridge hindlimb def: "A hindlimb that is part of an apical ectodermal ridge [Obol]." [OBOL:automatic] xref: OG:0001066 is_obsolete: true [Term] id: UBERON:0005243 name: interventricular septum endocardium def: "An endocardium that is part of a interventricular septum [Obol]." [OBOL:automatic] comment: todo - split? synonym: "endocardium of interventricular septum" EXACT [FMA:83584] xref: EHDAA2:0000886 xref: EHDAA2:0000887 xref: FMA:83584 xref: OG:0000615 is_a: UBERON:0002165 ! implied link automatically realized ! endocardium relationship: part_of UBERON:0002094 intersection_of: UBERON:0002165 ! endocardium intersection_of: part_of UBERON:0002094 ! interventricular septum [Term] id: UBERON:0005244 name: lobar bronchus of right lung cranial lobe def: "A lobar bronchus that is part of a upper lobe of right lung [Obol]." [OBOL:automatic] xref: EHDAA2:0001752 xref: OG:0000240 is_a: UBERON:0003404 ! implied link automatically realized ! lobar bronchus of right lung relationship: part_of UBERON:0002170 intersection_of: UBERON:0002183 ! lobar bronchus intersection_of: part_of UBERON:0002170 ! upper lobe of right lung [Term] id: UBERON:0005245 name: lobar bronchus of the right lung caudal lobe def: "A lobar bronchus that is part of a lower lobe of right lung [Obol]." [OBOL:automatic] xref: EHDAA2:0001744 xref: OG:0000250 is_a: UBERON:0003404 ! implied link automatically realized ! lobar bronchus of right lung relationship: part_of UBERON:0002171 intersection_of: UBERON:0002183 ! lobar bronchus intersection_of: part_of UBERON:0002171 ! lower lobe of right lung [Term] id: UBERON:0005248 name: bulbus cordis myocardium def: "A myocardium that is part of a bulbus cordis [Obol]." [OBOL:automatic] xref: OG:0000609 is_a: UBERON:0002349 ! implied link automatically realized ! myocardium relationship: part_of UBERON:0004706 intersection_of: UBERON:0002349 ! myocardium intersection_of: part_of UBERON:0004706 ! bulbus cordis [Term] id: UBERON:0005249 name: metanephric renal pelvis synonym: "metanephros pelvis" EXACT [OG:0000945] xref: OG:0000945 is_a: UBERON:0001224 ! implied link automatically realized ! renal pelvis relationship: part_of UBERON:0000081 intersection_of: UBERON:0001224 ! renal pelvis intersection_of: part_of UBERON:0000081 ! metanephros [Term] id: UBERON:0005250 name: stomatodeum gland subset: organ_slim xref: OG:0000658 is_a: UBERON:0002530 ! implied link automatically realized ! gland is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: part_of UBERON:0000930 intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0000930 ! stomodeum [Term] id: UBERON:0005251 name: yolk sac cavity def: "An anatomical cavity that is part of a yolk sac [Obol]." [OBOL:automatic] synonym: "cavity of yolk sac" EXACT [FMA:63942] xref: EMAPA:16055 xref: FMA:63942 xref: OG:0000843 is_a: UBERON:0002553 ! implied link automatically realized ! anatomical cavity relationship: part_of UBERON:0001040 intersection_of: UBERON:0002553 ! anatomical cavity intersection_of: part_of UBERON:0001040 ! yolk sac [Term] id: UBERON:0005252 name: omental bursa cavity def: "An anatomical cavity that is part of a lesser sac [Obol]." [OBOL:automatic] comment: note EHDAA2 synonym: "cavity of lesser sac" EXACT [FMA:9702] synonym: "cavity of omental bursa" EXACT [FMA:9702] synonym: "cavity of omental bursa viewed anatomically" EXACT [FMA:9702] synonym: "lesser peritoneal sac" EXACT [FMA:9702] synonym: "lesser sac cavity" EXACT [FMA:9702] xref: EHDAA2:0001298 xref: EHDAA2:0004558 xref: EMAPA:18458 xref: EMAPA:18461 xref: FMA:9702 xref: OG:0000827 is_a: UBERON:0002553 ! implied link automatically realized ! anatomical cavity relationship: part_of UBERON:0001341 intersection_of: UBERON:0002553 ! anatomical cavity intersection_of: part_of UBERON:0001341 ! lesser sac [Term] id: UBERON:0005253 name: head mesenchyme def: "Portion of primordial embryonic connective tissue of the developing head, consisting of mesenchymal cells supported in interlaminar jelly, that derive mostly from the mesoderm and contribute to head connective tissue, bone and musculature in conjunction with cranial neural crest cells." [ISBN:0683400088, MP:0011260] comment: todo - merge? subset: vertebrate_core synonym: "cephalic mesenchyme" EXACT [MP:0011260] xref: EFO:0003492 xref: EHDAA:179 xref: EHDAA2:0000732 xref: EMAPA:16098 xref: OG:0000332 xref: ZFA:0000113 is_a: UBERON:0003104 {source="ZFA"} ! mesenchyme [Term] id: UBERON:0005254 name: upper leg mesenchyme def: "A mesenchyme that is part of a hindlimb stylopod [Obol]." [OBOL:automatic] xref: EHDAA2:0002132 xref: EMAPA:17501 xref: OG:0000506 is_a: UBERON:0003860 ! implied link automatically realized ! hindlimb mesenchyme relationship: part_of UBERON:0000376 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0000376 ! hindlimb stylopod [Term] id: UBERON:0005255 name: foot digit mesenchyme def: "A mesenchyme that is part of a toe [Obol]." [OBOL:automatic] xref: OG:0000463 is_a: UBERON:0003860 ! implied link automatically realized ! hindlimb mesenchyme relationship: part_of UBERON:0001466 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001466 ! foot digit [Term] id: UBERON:0005256 name: trunk mesenchyme subset: vertebrate_core xref: EFO:0003485 xref: EHDAA:377 xref: EHDAA2:0002092 xref: EMAPA:16177 xref: OG:0000281 xref: ZFA:0000081 is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme relationship: part_of UBERON:0002100 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0002100 ! trunk [Term] id: UBERON:0005257 name: hand digit mesenchyme def: "A mesenchyme that is part of a finger [Obol]." [OBOL:automatic] xref: EHDAA2:0000407 xref: OG:0001416 is_a: UBERON:0003859 ! implied link automatically realized ! forelimb mesenchyme relationship: part_of UBERON:0002389 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0002389 ! hand digit [Term] id: UBERON:0005258 name: upper arm mesenchyme def: "A mesenchyme that is part of a forelimb stylopod [Obol]." [OBOL:automatic] xref: EHDAA2:0002114 xref: EMAPA:17426 xref: OG:0000505 is_a: UBERON:0003859 ! implied link automatically realized ! forelimb mesenchyme relationship: part_of UBERON:0003822 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0003822 ! forelimb stylopod [Term] id: UBERON:0005259 name: lower leg mesenchyme def: "A mesenchyme that is part of a lower leg [Obol]." [OBOL:automatic] xref: EHDAA2:0001032 xref: EMAPA:17498 xref: OG:0000752 is_a: UBERON:0003860 ! implied link automatically realized ! hindlimb mesenchyme relationship: part_of UBERON:0003823 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0003823 ! hindlimb zeugopod [Term] id: UBERON:0005260 name: foot plate mesenchyme def: "A mesenchyme that is part of a foot plate [Obol]." [OBOL:automatic] xref: OG:0001055 is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue relationship: part_of UBERON:0004343 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0004343 ! foot plate [Term] id: UBERON:0005261 name: atrium cardiac jelly def: "A cardiac jelly that is part of an atrium [Obol]." [OBOL:automatic] xref: EMAPA:16690 xref: EMAPA:16814 xref: EMAPA:16821 xref: OG:0000941 is_a: UBERON:0003906 ! implied link automatically realized ! cardiac jelly is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0002081 intersection_of: UBERON:0003906 ! cardiac jelly intersection_of: part_of UBERON:0002081 ! cardiac atrium [Term] id: UBERON:0005262 name: ventricle cardiac jelly def: "A cardiac jelly that is part of a ventricle [Obol]." [OBOL:automatic] xref: OG:0000943 is_a: UBERON:0003906 ! implied link automatically realized ! cardiac jelly relationship: part_of UBERON:0002300 intersection_of: UBERON:0003906 ! cardiac jelly intersection_of: part_of UBERON:0002300 ! ventricle [Term] id: UBERON:0005263 name: outflow tract cardiac jelly def: "A cardiac jelly that is part of a outflow tract [Obol]." [OBOL:automatic] xref: EHDAA2:0001354 xref: EMAPA:16230 xref: EMAPA:16347 xref: OG:0000940 is_a: UBERON:0003906 ! implied link automatically realized ! cardiac jelly is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0004145 intersection_of: UBERON:0003906 ! cardiac jelly intersection_of: part_of UBERON:0004145 ! outflow tract [Term] id: UBERON:0005264 name: midbrain neural fold xref: OG:0000793 is_obsolete: true [Term] id: UBERON:0005265 name: hindbrain neural fold xref: OG:0001211 is_obsolete: true [Term] id: UBERON:0005266 name: spinal cord neural fold xref: OG:0000628 is_obsolete: true [Term] id: UBERON:0005267 name: renal cortex collecting duct def: "A collecting duct of renal tubule that is part of a cortex of kidney [Obol]." [OBOL:automatic] xref: MA:0002600 is_a: UBERON:0001232 ! implied link automatically realized ! collecting duct of renal tubule relationship: part_of UBERON:0001225 intersection_of: UBERON:0001232 ! collecting duct of renal tubule intersection_of: part_of UBERON:0001225 ! cortex of kidney [Term] id: UBERON:0005268 name: renal cortex artery def: "An artery that is part of a cortex of kidney [Obol]." [OBOL:automatic] synonym: "kidney cortex artery" EXACT [MP:0011314] synonym: "renal cortex arterial system" RELATED [MA:0002582] synonym: "renal cortex artery" EXACT [MA:0002582] xref: EMAPA:28035 xref: MA:0002582 is_a: UBERON:0001637 ! implied link automatically realized ! artery is_a: UBERON:0003644 ! implied link automatically realized ! kidney arterial blood vessel relationship: part_of UBERON:0001225 intersection_of: UBERON:0001637 ! artery intersection_of: part_of UBERON:0001225 ! cortex of kidney [Term] id: UBERON:0005269 name: renal cortex vein def: "A vein that is part of a cortex of kidney [Obol]." [OBOL:automatic] synonym: "kidney cortex vein" RELATED [MP:0011322] synonym: "renal cortex venous system" RELATED [MA:0002592] xref: EMAPA:28152 xref: MA:0002592 is_a: UBERON:0001140 ! implied link automatically realized ! renal vein relationship: part_of UBERON:0001225 intersection_of: UBERON:0001638 ! vein intersection_of: part_of UBERON:0001225 ! cortex of kidney [Term] id: UBERON:0005270 name: renal cortex interstitium def: "A portion of interstitial tissue that is part of a cortex of kidney [Obol]." [OBOL:automatic] xref: EMAPA:28136 xref: MA:0002608 is_a: UBERON:0005215 ! implied link automatically realized ! kidney interstitium relationship: part_of UBERON:0001225 intersection_of: UBERON:0005169 ! interstitial tissue intersection_of: part_of UBERON:0001225 ! cortex of kidney [Term] id: UBERON:0005271 name: juxtamedullary cortex def: "the part of the renal cortex nearest to the medulla." [http://medical-dictionary.thefreedictionary.com/juxtamedullary+cortex] synonym: "inner cortex of kidney" EXACT [FMA:74288] synonym: "inner renal cortex" EXACT [KUPO:0001008] synonym: "juxtamedullary cortex of kidney" EXACT [FMA:74288] xref: FMA:74288 xref: KUPO:0001008 xref: MA:0001648 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001225 {source="FMA", source="KUPO"} ! cortex of kidney [Term] id: UBERON:0005272 name: peritubular capillary def: "In the renal system, peritubular capillaries are tiny blood vessels that travel alongside nephrons allowing reabsorption and secretion between blood and the inner lumen of the nephron. Ions and minerals that need to be saved in the body are reabsorbed into the peritubular capillaries through active transport, secondary active transport, or transcytosis. The ions that need to be excreted as waste are secreted from the capillaries into the nephron to be sent towards the bladder and out of the body. The majority of exchange through the peritubular capillaries occurs because of chemical gradients, osmosis and Na+ pumps[WP]." [Wikipedia:Peritubular_capillaries] xref: MA:0002588 is_a: UBERON:0003527 ! kidney capillary [Term] id: UBERON:0005273 name: nail bed def: "Region of skin beneath the nail plate[WP]." [UBERON:gvg] xref: EV:0100158 xref: MA:0002706 xref: OG:0001362 xref: SCTID:181578005 is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0005275 ! dorsal skin of digit relationship: adjacent_to UBERON:0008198 ! nail plate relationship: part_of UBERON:0001705 {source="MA"} ! nail [Term] id: UBERON:0005274 name: proximal nail bed xref: MA:0002709 is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0005275 ! dorsal skin of digit relationship: part_of UBERON:0001705 ! nail [Term] id: UBERON:0005275 name: dorsal skin of digit synonym: "dorsal digit skin" EXACT [] synonym: "skin of dorsal part of digit" EXACT [] is_a: UBERON:0000014 ! zone of skin is_a: UBERON:0001419 ! implied link automatically realized ! skin of limb relationship: part_of UBERON:0002544 ! digit [Term] id: UBERON:0005276 name: dorsal skin of finger comment: this class is explicitly the union of the two FMA classes synonym: "dorsal finger skin" EXACT [] synonym: "skin of dorsal part of finger" EXACT [FMA:38320] synonym: "subdivision of skin of dorsal part of finger" EXACT [FMA:60346] xref: FMA:38320 xref: FMA:60346 is_a: UBERON:0003533 ! implied link automatically realized ! hand digit skin is_a: UBERON:0005275 ! implied link automatically realized ! dorsal skin of digit relationship: part_of UBERON:0002389 intersection_of: UBERON:0005275 ! dorsal skin of digit intersection_of: part_of UBERON:0002389 ! hand digit [Term] id: UBERON:0005277 name: dorsal skin of toe comment: this class is explicitly the union of the two FMA classes synonym: "dorsal toe skin" EXACT [] synonym: "skin of dorsal part of toe" EXACT [FMA:37868] synonym: "subdivision of skin of dorsal part of toe" EXACT [FMA:60523] xref: FMA:37868 xref: FMA:60523 is_a: UBERON:0003530 ! implied link automatically realized ! foot digit skin is_a: UBERON:0005275 ! implied link automatically realized ! dorsal skin of digit relationship: part_of UBERON:0001466 intersection_of: UBERON:0005275 ! dorsal skin of digit intersection_of: part_of UBERON:0001466 ! foot digit [Term] id: UBERON:0005278 name: nail bed of finger xref: FMA:60348 xref: SCTID:244199003 is_a: UBERON:0005276 ! dorsal skin of finger [Term] id: UBERON:0005279 name: nail bed of toe xref: FMA:60529 xref: SCTID:244200000 is_a: UBERON:0005277 ! dorsal skin of toe [Term] id: UBERON:0005280 name: head mesoderm synonym: "cranial mesoderm" EXACT [] xref: AAO:0011051 xref: EFO:0003337 xref: XAO:0000053 is_a: UBERON:0005423 ! developing anatomical structure relationship: develops_from UBERON:0003063 ! prechordal plate relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0000926 ! mesoderm [Term] id: UBERON:0005281 name: ventricular system of central nervous system def: "a set of structures containing cerebrospinal fluid in the brain. It is continuous with the central canal of the spinal cord." [Wikipedia:Ventricular_system] subset: vertebrate_core synonym: "ventricular system" EXACT [ZFA:0001261] synonym: "ventricular system of neuraxis" EXACT [FMA:242675] xref: EFO:0003650 xref: EV:0100306 xref: FMA:242675 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Gray734.png/200px-Gray734.png xref: TAO:0001261 xref: ZFA:0001261 is_a: UBERON:0000467 ! anatomical system is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001017 ! central nervous system [Term] id: UBERON:0005282 name: ventricular system of brain synonym: "brain ventricular system" EXACT [OG:0000005] xref: EV:0100306 xref: FMA:242787 xref: OG:0000005 is_a: UBERON:0000467 ! anatomical system is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain relationship: part_of UBERON:0000955 ! brain relationship: part_of UBERON:0005281 ! ventricular system of central nervous system [Term] id: UBERON:0005283 name: tela choroidea def: "Portion of tissue that is part of the primitive meninx which forms a fold, roofing a ventricle of the brain and supporting the choroid plexus." [ISBN:0030223695, ISBN:0683014617, Wikipedia:Tela_chorioidea, ZFA:0000447] comment: TODO check relationship to choroid plexus - MP implies it is part of, as does WP. ZF def implies adjacency subset: vertebrate_core synonym: "tela chorioidea" RELATED [FMA:242849] xref: EHDAA:7567 xref: EHDAA2:0000250 xref: EMAPA:17548 xref: FMA:242849 xref: TAO:0000447 xref: ZFA:0000447 is_a: UBERON:0005358 {source="FMA"} ! ventricle of nervous system relationship: overlaps UBERON:0001886 ! choroid plexus relationship: overlaps UBERON:0002360 ! meninx [Term] id: UBERON:0005284 name: brain vasculature def: "A vasculature that is part of a brain [Obol]." [OBOL:automatic] subset: vertebrate_core synonym: "vasculature of brain" EXACT [FMA:242007] xref: EFO:0003491 xref: FMA:242007 xref: TAO:0000099 xref: ZFA:0000099 is_a: UBERON:0002200 ! implied link automatically realized ! vasculature of head is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain is_a: UBERON:0006876 ! implied link automatically realized ! vasculature of organ relationship: part_of UBERON:0000955 intersection_of: UBERON:0002049 ! vasculature intersection_of: part_of UBERON:0000955 ! brain [Term] id: UBERON:0005286 name: tela choroidea of tectal ventricle def: "Tela choroidea that lines the tectal ventricle." [ZFIN:curator] synonym: "tela chorioidea tectal ventricle" EXACT [ZFA:0005157] synonym: "tela choroidea of cerebral aqueduct" EXACT [OBOL:automatic] synonym: "tela choroidea tectal ventricle" EXACT [ZFA:0005157] xref: ZFA:0005157 is_a: UBERON:0005283 ! tela choroidea relationship: part_of UBERON:0002289 intersection_of: UBERON:0005283 ! tela choroidea intersection_of: part_of UBERON:0002289 ! cerebral aqueduct relationship: part_of UBERON:0002289 ! cerebral aqueduct [Term] id: UBERON:0005287 name: tela choroidea of fourth ventricle def: "Tela chorioidea that lines the fourth ventricle[ZFA]. The tela chorioidea of the fourth ventricle is the name applied to the triangular fold of pia mater which is carried upward between the cerebellum and the medulla oblongata. It consists of two layers, which are continuous with each other in front, and are more or less adherent throughout: The posterior layer covers the antero-inferior surface of the cerebellum. The anterior layer is applied to the structures which form the lower part of the roof of the ventricle, and is continuous inferiorly with the pia mater on the inferior peduncles and closed part of the medulla[WP]." [Wikipedia:Tela_chorioidea_of_fourth_ventricle, ZFIN:curator] subset: vertebrate_core synonym: "choroid membrane" EXACT [FMA:78493] synonym: "choroid membrane of fourth ventricle" EXACT [FMA:78493] synonym: "tela chorioidea fourth ventricle" EXACT [] synonym: "tela choroidea" BROAD [FMA:78493, FMA:TA] synonym: "tela choroidea fourth ventricle" EXACT [] synonym: "tela choroidea of fourth ventricle" EXACT [] synonym: "tela choroidea ventriculi quarti" EXACT [FMA:78493, FMA:TA] xref: FMA:78493 xref: SCTID:362321009 xref: ZFA:0005158 xref: ZFIN:ZDB-ANAT-090922-200 is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain is_a: UBERON:0005283 ! tela choroidea relationship: part_of UBERON:0002422 intersection_of: UBERON:0005283 ! tela choroidea intersection_of: part_of UBERON:0002422 ! fourth ventricle relationship: part_of UBERON:0002422 ! fourth ventricle [Term] id: UBERON:0005288 name: tela choroidea of third ventricle def: "Tela chorioidea that lines the third ventricle[ZFA]. The part of the choroid plexus in relation to the body of the ventricle forms the vascular fringed margin of a triangular process of pia mater, named the tela chorioidea of the third ventricle, and projects from under cover of the lateral edge of the fornix. Blood is supplied by branches from the superior cerebellar artery[WP]." [Wikipedia:Tela_chorioidea_of_third_ventricle, ZFIN:curator] subset: vertebrate_core synonym: "choroid membrane of third ventricle" EXACT [FMA:78463] synonym: "tela chorioidea of third ventricle" EXACT [] synonym: "tela chorioidea third ventricle" EXACT [ZFA:0005159] synonym: "tela choroidea third ventricle" EXACT [] synonym: "tela choroidea ventriculi tertii" EXACT [FMA:78463, FMA:TA] xref: FMA:78463 xref: SCTID:362320005 xref: ZFA:0005159 is_a: UBERON:0005283 ! tela choroidea relationship: part_of UBERON:0002286 intersection_of: UBERON:0005283 ! tela choroidea intersection_of: part_of UBERON:0002286 ! third ventricle relationship: part_of UBERON:0002286 ! third ventricle [Term] id: UBERON:0005289 name: tela choroidea of telencephalic ventricle def: "Tela chorioidea that lines the telencephalic ventricle." [ZFIN:curator] subset: vertebrate_core synonym: "tela chorioidea of lateral ventricle" EXACT [] synonym: "tela chorioidea of telencephalic ventricle" EXACT [] synonym: "tela chorioidea telencephalic ventricle" EXACT [ZFA:0005160] synonym: "tela choroidea of lateral ventricle" EXACT [] synonym: "tela choroidea telencephalic ventricle" EXACT [] xref: FMA:83712 xref: SCTID:362319004 xref: ZFA:0005160 xref: ZFIN:ZDB-ANAT-090922-202 is_a: UBERON:0005283 ! tela choroidea relationship: part_of UBERON:0002285 intersection_of: UBERON:0005283 ! tela choroidea intersection_of: part_of UBERON:0002285 ! lateral ventricle [Term] id: UBERON:0005290 name: myelencephalon def: "The posterior part of the developing vertebrate hindbrain or the corresponding part of the adult brain composed of the medulla oblongata and a portion of the fourth ventricle; as well as the glossopharyngeal nerve (CN IX), vagus nerve (CN X), accessory nerve (CN XI), hypoglossal nerve (CN XII), and a portion of the vestibulocochlear nerve (CN VIII).[BTO,WP]." [BTO:0000758, Wikipedia:Myelencephalon] comment: the terms metencephalon and myelencephalon are only meaningful in mammals and birds - Neuroanatomy of the Zebrafish Brain. Note that its not clear if this refers to the developing medulla oblongata - MA (adult) has two distinct classes subset: uberon_slim xref: BTO:0000758 xref: EHDAA:5526 xref: EHDAA2:0001207 xref: EMAPA:17082 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/54/EmbryonicBrain.svg/200px-EmbryonicBrain.svg.png xref: MA:0000205 xref: OG:0000456 is_a: UBERON:0000063 ! organ segment is_a: UBERON:0004733 ! implied link automatically realized ! segmental subdivision of hindbrain relationship: part_of UBERON:0002028 ! hindbrain [Term] id: UBERON:0005291 name: embryonic tissue def: "A portion of tissue that is part of an embryo." [OBOL:automatic] synonym: "developing tissue" RELATED [] synonym: "portion of embryonic tissue" EXACT [OBOL:automatic] is_a: UBERON:0000479 ! implied link automatically realized ! tissue is_a: UBERON:0002050 ! implied link automatically realized ! embryonic structure relationship: part_of UBERON:0000922 intersection_of: UBERON:0000479 ! tissue intersection_of: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0002050 ! embryonic structure [Term] id: UBERON:0005292 name: extraembryonic tissue def: "Portion of tissue that is contiguous with the embryo and is comprised of portions of tissue or cells that will not contribute to the embryo." [UBERON:cjm] synonym: "extra-embryonic tissue" EXACT [] xref: BTO:0003360 xref: EFO:0001406 xref: MAT:0000061 xref: MIAA:0000061 is_a: UBERON:0000478 ! implied link automatically realized ! extraembryonic structure is_a: UBERON:0000479 ! implied link automatically realized ! tissue relationship: adjacent_to UBERON:0002050 relationship: existence_starts_and_ends_during UBERON:0000068 intersection_of: UBERON:0000479 ! tissue intersection_of: adjacent_to UBERON:0002050 ! embryonic structure intersection_of: existence_starts_and_ends_during UBERON:0000068 ! embryo stage [Term] id: UBERON:0005293 name: cerebellum lobe synonym: "cerebellar lobe" EXACT [FMA:242392] synonym: "lobe of cerebellum" EXACT [FMA:242392] synonym: "lobe parts of the cerebellar cortex" EXACT [NIF_GrossAnatomy:birnlex_1076] xref: FMA:242392 xref: MA:0002963 xref: NIF_GrossAnatomy:birnlex_1076 xref: SCTID:263971006 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0002129 ! cerebellar cortex [Term] id: UBERON:0005294 name: genital ridge def: "The precursor to the gonads." [Wikipedia:Gonadal_ridge] comment: TODO - check developmental relationships. merge with urogenital ridge? synonym: "gonadal ridge" EXACT [Wikipedia:Gonadal_ridge] xref: AAO:0011047 xref: EHDAA2:0004044 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray1106.png/200px-Gray1106.png xref: ncithesaurus:Gonadal_Ridge xref: SCTID:361399001 xref: XAO:0000018 is_a: UBERON:0005423 ! developing anatomical structure relationship: develops_from UBERON:0004876 ! urogenital ridge relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0004122 ! genitourinary system [Term] id: UBERON:0005295 name: sex cord def: "Cordlike masses of epithelial tissue that invaginate from germinal epithelium of the gonad and give rise to seminiferous tubules and rete testes in the male, and primary ovarian follicles and rete ovarii in the female." [http://www.answers.com/topic/sex-cord, Wikipedia:Sex_cords] synonym: "primitive sex cord" RELATED [] xref: EHDAA2:0001523 xref: EHDAA2:0004051 is_a: UBERON:0005423 ! developing anatomical structure relationship: develops_from UBERON:0005294 ! genital ridge relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0005296 name: ovary sex cord def: "structures that develop from sex cords in the female. After further development they become the ovarian follicles." [Wikipedia:Cortical_cords] comment: TODO check secondary vs cortical vs ovary synonym: "cortical cord" RELATED [] synonym: "cortical sex cord" RELATED [] synonym: "ovary primitive sex cord" RELATED [] synonym: "secondary cord" RELATED [] xref: EHDAA:8130 xref: EHDAA2:0001363 xref: ncithesaurus:Cortical_Cord is_a: UBERON:0005295 ! implied link automatically realized ! sex cord relationship: part_of UBERON:0000992 intersection_of: UBERON:0005295 ! sex cord intersection_of: part_of UBERON:0000992 ! female gonad [Term] id: UBERON:0005297 name: testis sex cord def: "The testis cords are precursors to the rete testis. They play several different roles in the development of the male genitals[WP]." [Wikipedia:Testis_cords] comment: check primary vs testis synonym: "primary sex cord" RELATED [] synonym: "testis cord" EXACT [MP:0006424] synonym: "testis primitive sex cord" RELATED [] xref: EHDAA:8152 xref: EHDAA2:0002011 xref: EMAPA:29098 xref: OG:0001321 is_a: UBERON:0005295 ! implied link automatically realized ! sex cord relationship: part_of UBERON:0000473 intersection_of: UBERON:0005295 ! sex cord intersection_of: part_of UBERON:0000473 ! testis [Term] id: UBERON:0005298 name: skin of clitoris def: "A zone of skin that is part of a clitoris [Obol]." [OBOL:automatic] synonym: "clitoris skin" EXACT [] xref: FMA:20168 xref: SCTID:361374002 is_a: UBERON:0000014 ! implied link automatically realized ! zone of skin is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0002411 intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0002411 ! clitoris [Term] id: UBERON:0005299 name: prepuce of clitoris def: "In female human anatomy, the clitoral hood, is a fold of skin that surrounds and protects the clitoral glans. It develops as part of the labia minora and is homologous with the foreskin (equally called prepuce) in male genitals." [Wikipedia:Clitoral_hood] comment: Note FMA has FMA:27886 skin of prepuce of clitoris- how is this different? synonym: "clitoral hood" EXACT [Wikipedia:Clitoral_hood] synonym: "clitoral prepuce" EXACT [] synonym: "clitoris prepuce" EXACT [] synonym: "prepuce of female" EXACT [EMAPA:30699] synonym: "prepuce of the clitoris" EXACT [] synonym: "preputium clitoridis" EXACT [Wikipedia:Clitoral_hood] xref: EMAPA:30699 xref: FMA:20169 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bd/Clitoris_outer_anatomy.gif/200px-Clitoris_outer_anatomy.gif xref: ncithesaurus:Female_Prepuce xref: SCTID:362242009 is_a: UBERON:0000014 ! zone of skin is_a: UBERON:0005298 ! implied link automatically realized ! skin of clitoris relationship: part_of UBERON:0005298 ! skin of clitoris [Term] id: UBERON:0005300 name: reproductive gland is_obsolete: true replaced_by: UBERON:0003937 [Term] id: UBERON:0005301 name: male preputial gland def: "One of the sebaceous glands of the corona and neck of the glans penis." [MP:0002717] synonym: "gland of Tyson" RELATED [BTO:0001111] synonym: "preputial gland" BROAD [BTO:0001111, EMAPA:30640] synonym: "preputial gland of male" EXACT [] synonym: "preputial gland of penis" EXACT [FMA:19653] xref: BTO:0001111 xref: EMAPA:30502 xref: EMAPA:30640 xref: EMAPA:30659 xref: FMA:19653 xref: MA:0000403 xref: ncithesaurus:Preputial_Gland is_a: UBERON:0000359 ! implied link automatically realized ! preputial gland is_a: UBERON:0003487 ! implied link automatically realized ! skin sebaceous gland is_a: UBERON:0005399 ! implied link automatically realized ! male reproductive gland relationship: part_of UBERON:0003101 intersection_of: UBERON:0000359 ! preputial gland intersection_of: part_of UBERON:0003101 ! male organism relationship: part_of UBERON:0001332 ! prepuce of penis [Term] id: UBERON:0005302 name: female preputial gland def: "A preputial gland that is part of a female organism [Obol]." [OBOL:automatic] comment: TODO: check MA terms synonym: "clitoral gland" EXACT [MA:0001702] synonym: "preputial gland of female" EXACT [EMAPA:30499] xref: BTO:0003119 xref: EMAPA:30499 xref: EMAPA:30711 xref: MA:0001702 xref: MA:0001703 xref: ncithesaurus:Clitoral_Gland is_a: UBERON:0000359 ! implied link automatically realized ! preputial gland is_a: UBERON:0005398 ! implied link automatically realized ! female reproductive gland relationship: part_of UBERON:0003100 intersection_of: UBERON:0000359 ! preputial gland intersection_of: part_of UBERON:0003100 ! female organism relationship: part_of UBERON:0000474 ! female reproductive system [Term] id: UBERON:0005303 name: hypogastric nerve def: "the transition between the superior hypogastric plexus and the inferior hypogastric plexus." [Wikipedia:Hypogastric_nerve] comment: check plexus vs nerve. WP indicates it is a 'transition' synonym: "hypogastric nerve plexus" EXACT [MA:0001140] synonym: "hypogastric plexus" EXACT [EMAPA:18225] xref: EMAPA:18225 xref: FMA:77596 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2d/Gray847.png/200px-Gray847.png xref: MA:0001140 xref: MESH:A.08.800.050.050.400 xref: ncithesaurus:Hypogastric_Nerve_Plexus xref: SCTID:181061006 is_a: UBERON:0001816 ! autonomic nerve plexus [Term] id: UBERON:0005304 name: submucous nerve plexus def: "The nerves of the small intestines are derived from the plexuses of parasympathetic nerves around the superior mesenteric artery. From this source they run to the myenteric plexus of nerves and ganglia situated between the circular muscular fibers and the mucosal cells. From this a secondary plexus, the plexus of the submucosa (Meissner's plexus, Submucous plexus, submucosal plexus) is derived, and it is formed by branches that have perforated the circular muscular fibers. This plexus lies in the submucous coat of the intestine; it also contains ganglia from which nerve fibers pass to the muscularis mucosae and to the mucous membrane. The nerve bundles of the submucous plexus are finer than those of the myenteric plexus. Its function is to innervate cells in the epithelial layer and the smooth muscle of the[WP]." [Wikipedia:Meissner's_plexus] comment: check myenteric vs submucosal synonym: "Henle's plexus" RELATED [] synonym: "meissner's plexus" RELATED [] synonym: "Meissner's plexus" RELATED [MA:0001149] synonym: "submucosal nerve plexus" EXACT [FMA:21542, Wikipedia:Meissner's_plexus] xref: FMA:21542 xref: GAID:801 xref: MA:0001149 xref: MESH:A.08.800.050.050.850 xref: ncithesaurus:Submucous_Nerve_Plexus is_a: UBERON:0001816 ! autonomic nerve plexus relationship: part_of UBERON:0000429 ! enteric plexus [Term] id: UBERON:0005305 name: thyroid follicle def: "Discrete, cystlike units of the thyroid gland that are lined with cuboidal epithelium and are filled with a colloid substance, about 30 to each lobule[BTO]." [BTO:0004708] subset: uberon_slim subset: vertebrate_core synonym: "thyroid gland follicle" EXACT [] xref: BTO:0004708 xref: FMA:68805 xref: MA:0000726 xref: ncithesaurus:Thyroid_Gland_Follicle xref: SCTID:176685006 xref: TAO:0001072 xref: ZFA:0001072 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: part_of UBERON:0002046 ! thyroid gland [Term] id: UBERON:0005306 name: blastema def: "A blastema is a mass of cells capable of growth and regeneration into organs or body parts. Historically blastema have been thought to be composed of undifferentiated pluripotent cells, but recent research indicates that in some organisms blastema may retain memory of tissue origin.[1] Blastemata are typically found in the early stages of an organism's development such as in embryos, and in the regeneration of tissues, organs and bone[WP]. A regenerating tissue composed of a proliferative mass of undifferentiated progenitor cells from which new differentiated structures arise[ZFA]." [Wikipedia:Blastema, ZFA:0001270, ZFIN:ZDB-PUB-061108-12] synonym: "regeneration blastema" EXACT [ZFIN:ZDB-PUB-061108-12] xref: BTO:0001638 xref: EFO:0003658 xref: TAO:0001270 xref: XAO:0004060 xref: ZFA:0001270 is_a: UBERON:0000479 ! tissue [Term] id: UBERON:0005307 name: chorion-containing eggshell def: "An eggshell that contains chorion. An example of this is found in Drosophila melanogaster." [GO:0007304] is_a: UBERON:0005079 ! eggshell relationship: has_part UBERON:0000920 ! egg chorion [Term] id: UBERON:0005308 name: nephrostome def: "The nephrostome is the opening of the pronephros into the body cavity[GO]." [GO:0039018] xref: AAO:0011069 xref: XAO:0000062 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0002120 ! pronephros [Term] id: UBERON:0005309 name: pronephric nephron def: "A pronephric nephron is the functional unit of the pronephros[GO]." [GO:0039019] xref: AAO:0011091 xref: XAO:0000285 is_a: UBERON:0001285 ! implied link automatically realized ! nephron relationship: part_of UBERON:0002120 intersection_of: UBERON:0001285 ! nephron intersection_of: part_of UBERON:0002120 ! pronephros [Term] id: UBERON:0005310 name: pronephric nephron tubule def: "The pronephric nephron tubule is an epithelial tube that is part of the pronephric nephron and connects the filtration unit (glomerulus or glomus) of the pronephros to the pronephric duct[GO]." [GO:0039020] synonym: "pronephric tubule" EXACT [ZFA:0001558] xref: XAO:0004105 xref: ZFA:0001558 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0001231 ! implied link automatically realized ! nephron tubule relationship: part_of UBERON:0005309 intersection_of: UBERON:0001231 ! nephron tubule intersection_of: part_of UBERON:0005309 ! pronephric nephron relationship: part_of UBERON:0005309 {source="GO"} ! pronephric nephron [Term] id: UBERON:0005311 name: mammary placode def: "The mammary placode is a transient lens shaped structure that will give rise to the mammary bud proper[GO]." [GO:0060596] comment: TODO develops_from is_a: UBERON:0005085 {source="GO"} ! ectodermal placode relationship: develops_from UBERON:0008425 {source="Stedmans"} ! mammary ridge [Term] id: UBERON:0005312 name: primary ureteric bud def: ".[GO]." [GO:0060682] is_a: UBERON:0000084 ! ureteric bud [Term] id: UBERON:0005313 name: mammary duct terminal end bud def: ".[GO]." [GO:0060763] is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001765 ! mammary duct [Term] id: UBERON:0005314 name: alveolar primary septum def: "A primary alveolar septum is a specialized epithelium that surrounds the saccule as it forms[GO]." [GO:0061143] comment: TODO - check UBERON:0004893 interalveolar septum is_a: UBERON:0000115 ! lung epithelium relationship: surrounds UBERON:0000116 ! lung saccule [Term] id: UBERON:0005315 name: alveolar secondary septum def: "A secondary alveolar septum is a specialized epithelium that subdivides the initial saccule[GO]." [GO:0061144] comment: TODO - check UBERON:0004893 interalveolar septum is_a: UBERON:0000115 ! lung epithelium is_a: UBERON:0004821 ! implied link automatically realized ! pulmonary alveolus epithelium relationship: part_of UBERON:0000116 ! lung saccule [Term] id: UBERON:0005316 name: endocardial endothelium def: "The endocardium is an anatomical structure comprised of an endothelium and an extracellular matrix that forms the innermost layer of tissue of the heart, and lines the heart chambers[GO]." [GO:0061147] synonym: "endocardium endothelium" EXACT [FMA:83596] xref: FMA:83596 is_a: UBERON:0001986 {source="FMA"} ! endothelium is_a: UBERON:0004638 ! implied link automatically realized ! blood vessel endothelium is_a: UBERON:0008307 ! implied link automatically realized ! heart endothelium relationship: part_of UBERON:0002165 intersection_of: UBERON:0001986 ! endothelium intersection_of: part_of UBERON:0002165 ! endocardium relationship: part_of UBERON:0002165 {source="FMA"} ! endocardium [Term] id: UBERON:0005317 name: pulmonary artery endothelium def: "An pulmonary artery endothelium is an epithelium that lines the pulmonary artery[GO]." [GO:0061155] synonym: "pulmonary artery endothelial tube" EXACT [GO:0061155] xref: BTO:0000137 is_a: UBERON:0001917 ! implied link automatically realized ! endothelium of artery relationship: part_of UBERON:0002012 intersection_of: UBERON:0001986 ! endothelium intersection_of: part_of UBERON:0002012 ! pulmonary artery [Term] id: UBERON:0005319 name: mesonephric collecting duct def: "The collecting duct is the final common path through which urine flows before entering the ureter and then emptying into the bladder[GO]." [GO:0061211] xref: AAO:0010390 xref: XAO:0000151 is_a: UBERON:0001232 ! implied link automatically realized ! collecting duct of renal tubule relationship: part_of UBERON:0000080 intersection_of: UBERON:0001232 ! collecting duct of renal tubule intersection_of: part_of UBERON:0000080 ! mesonephros [Term] id: UBERON:0005320 name: mesonephric juxtaglomerular apparatus def: "The juxtaglomerular apparatus lies adjacent to the glomerulus and regulates kidney function by maintaining the blood flow to the kidney and the filtration rate[GO]." [GO:0061212] is_a: UBERON:0002303 ! implied link automatically realized ! juxtaglomerular apparatus is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0000080 intersection_of: UBERON:0002303 ! juxtaglomerular apparatus intersection_of: part_of UBERON:0000080 ! mesonephros [Term] id: UBERON:0005321 name: mesonephric smooth muscle tissue def: ".[GO]." [GO:0061214] is_a: UBERON:0001135 ! implied link automatically realized ! smooth muscle tissue is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0002113 intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0002113 ! kidney [Term] id: UBERON:0005322 name: mesonephric nephron def: "A nephron is the functional unit of the kidney[GO]." [GO:0061215] comment: TODO synonym: "stage IV nephron" RELATED [ZFA:0005592] xref: AAO:0010387 xref: XAO:0000292 xref: ZFA:0005592 is_a: UBERON:0001285 ! implied link automatically realized ! nephron relationship: part_of UBERON:0000080 intersection_of: UBERON:0001285 ! nephron intersection_of: part_of UBERON:0000080 ! mesonephros relationship: develops_from UBERON:0005323 {source="XAO"} ! mesonephric mesenchyme [Term] id: UBERON:0005323 name: mesonephric mesenchyme def: "Mesonephric mesenchyme is the tissue made up of loosely connected mesenchymal cells in the mesonephros[GO]." [GO:0061219] xref: AAO:0011062 xref: EHDAA2:0001132 xref: EMAPA:27585 xref: EMAPA:27661 xref: XAO:0000291 is_a: UBERON:0005256 ! implied link automatically realized ! trunk mesenchyme is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0000080 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0000080 ! mesonephros [Term] id: UBERON:0005324 name: mesonephric macula densa def: "The mesonephric macula densa is an area of specialized cells in the distal tubule of the mesonephros that makes contact with the vascular pole of the glomerulus[GO]." [GO:0061220] is_a: UBERON:0002335 ! implied link automatically realized ! macula densa is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0000080 intersection_of: UBERON:0002335 ! macula densa intersection_of: part_of UBERON:0000080 ! mesonephros [Term] id: UBERON:0005325 name: mesonephric glomerulus def: "The mesonephric glomerulus is a capillary tuft which forms a close network with the visceral epithelium (podocytes) and the mesangium to form the filtration barrier and is surrounded by Bowman's capsule in nephrons of the mature vertebrate kidney, or mesonephros[GO]." [GO:0061224] synonym: "glomerulus" BROAD SENSU [AAO:0010388] xref: AAO:0010388 xref: EMAPA:30568 xref: EMAPA:30580 xref: OG:0001238 is_a: UBERON:0000074 ! implied link automatically realized ! renal glomerulus relationship: part_of UBERON:0000080 intersection_of: UBERON:0000074 ! renal glomerulus intersection_of: part_of UBERON:0000080 ! mesonephros [Term] id: UBERON:0005326 name: mesonephric glomerulus vasculature def: "The mesonephric glomerulus vasculature is composed of the tubule structures that carry blood or lymph in the mesonephric glomerulus[GO]." [GO:0061231] is_a: UBERON:0004190 ! implied link automatically realized ! glomerulus vasculature relationship: part_of UBERON:0000080 intersection_of: UBERON:0004190 ! glomerulus vasculature intersection_of: part_of UBERON:0000080 ! mesonephros [Term] id: UBERON:0005327 name: mesonephric glomerular epithelium def: "A mesonephric glomerular visceral epithelial cell is a specialized epithelial cell that contains 'feet' that interdigitate with the 'feet' of other glomerular epithelial cells in the mesonephros[GO]." [GO:0061232] is_a: UBERON:0004188 ! implied link automatically realized ! glomerular epithelium is_a: UBERON:0005330 ! implied link automatically realized ! mesonephric nephron epithelium relationship: part_of UBERON:0000080 intersection_of: UBERON:0004188 ! glomerular epithelium intersection_of: part_of UBERON:0000080 ! mesonephros [Term] id: UBERON:0005328 name: mesonephric comma-shaped body def: "The mesonephric comma-shaped body is the precursor structure to the mesonephric S-shaped body that contributes to the morphogenesis of a nephron in the mesonephros[GO]." [GO:0061236] is_a: UBERON:0004198 ! implied link automatically realized ! comma-shaped body relationship: part_of UBERON:0000080 intersection_of: UBERON:0004198 ! comma-shaped body intersection_of: part_of UBERON:0000080 ! mesonephros [Term] id: UBERON:0005329 name: mesonephric nephron tubule def: "A mesonephric nephron tubule is an epithelial tube that is part of the mesonephric nephron, the functional part of the mesonephros[GO]." [GO:0061240] synonym: "mesonephric renal tubule" EXACT [UBERON:cjm] is_a: UBERON:0000083 ! implied link automatically realized ! mesonephric tubule is_a: UBERON:0001231 ! nephron tubule is_a: UBERON:0005330 ! implied link automatically realized ! mesonephric nephron epithelium relationship: part_of UBERON:0000080 ! mesonephros [Term] id: UBERON:0005330 name: mesonephric nephron epithelium def: "The mesonephric nephron epithelium is a tissue that covers the surface of a nephron in the mesonephros[GO]." [GO:0061241] is_a: UBERON:0004211 ! implied link automatically realized ! nephron epithelium is_a: UBERON:0005103 ! implied link automatically realized ! mesonephric epithelium relationship: part_of UBERON:0000080 intersection_of: UBERON:0004211 ! nephron epithelium intersection_of: part_of UBERON:0000080 ! mesonephros [Term] id: UBERON:0005331 name: mesonephric renal vesicle def: "The renal vesicle is the primordial structure of the mesonephric nephron epithelium, and is formed by the condensation of mesenchymal cells[GO]." [GO:0061243] is_a: UBERON:0004209 ! implied link automatically realized ! renal vesicle is_a: UBERON:0005330 ! implied link automatically realized ! mesonephric nephron epithelium relationship: part_of UBERON:0000080 intersection_of: UBERON:0004209 ! renal vesicle intersection_of: part_of UBERON:0000080 ! mesonephros [Term] id: UBERON:0005332 name: mesonephric S-shaped body def: "The mesonephric S-shaped body is the successor of the mesonephric comma-shaped body that contributes to the morphogenesis of a nephron in the mesonephros[GO]." [GO:0061244] is_a: UBERON:0004199 ! implied link automatically realized ! S-shaped body relationship: part_of UBERON:0000080 intersection_of: UBERON:0004199 ! S-shaped body intersection_of: part_of UBERON:0000080 ! mesonephros [Term] id: UBERON:0005333 name: mammary bud alt_id: UBERON:0004181 def: "Mammary gland buds form by an outpocketing of the mammary placodes and grow to invade the mammary fat, when they form the mammary cord[GO]. produced along the length of the embryonic mammary ridge these buds represent the future locations of the mammary glands. Invagination of ectoderm at each bud leads to the development of epithelial diverticula, later maturing as lactiferous ducts[TFD]." [GO:0060648, http://medical-dictionary.thefreedictionary.com/mammary+bud] synonym: "mammary gland bud" EXACT [GO:0060648] synonym: "milk bud" RELATED [] is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0005153 ! epithelial bud is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue relationship: develops_from UBERON:0005311 ! mammary placode relationship: part_of UBERON:0000076 {source="PMID:20484386"} ! external ectoderm [Term] id: UBERON:0005334 name: oral lamina propria synonym: "lamina propria of oral mucosa" EXACT [] xref: EMAPA:26947 is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0004779 ! implied link automatically realized ! respiratory system lamina propria relationship: part_of UBERON:0003343 intersection_of: UBERON:0000030 ! lamina propria intersection_of: part_of UBERON:0003343 ! mucosa of oral region [Term] id: UBERON:0005335 name: chorioallantoic membrane def: "The chorioallantoic membrane ( also called the chorioallantois or abbreviated to CAM ) is a vascular membrane found in eggs of some amniotes, such as birds and reptiles. It is formed by the fusion of the mesodermal layers of two developmental structures: the allantois and the chorion. Three different layers compose the chorioallantoic membrane; these are called the chorionic epithelium, the mesenchyme and the allantoic epithelium. Blood capillaries and sinuses are found between epithelial cells of the chorionic layer, allowing close contact (within 0.2 N' shaped notch. The maxillary process forms the lateral wall and floor of the orbit, and in it are ossified the zygomatic bone and the greater part of the maxilla; it meets with the lateral nasal process, from which, however, it is separated for a time by a groove, the naso-optic furrow, that extends from the furrow encircling the eyeball to the olfactory pit. The maxillary processes ultimately fuse with the lateral nasal and globular processes, and form the lateral parts of the upper lip and the posterior boundaries of the nares. It is innervated by the maxillary nerve." [Wikipedia:Maxillary_prominence] synonym: "maxillary process" EXACT [EHDAA2:0001070] synonym: "maxillary process of embryo" EXACT [SCTID:346355001] xref: EHDAA:5877 xref: EHDAA2:0001070 xref: EMAPA:17359 xref: ncithesaurus:Maxillary_Prominence xref: SCTID:346355001 is_a: UBERON:0005423 ! developing anatomical structure disjoint_from: UBERON:0005869 ! maxillary process of inferior nasal concha relationship: develops_from UBERON:0007238 ! 1st arch maxillary component relationship: part_of UBERON:0000166 ! oral opening relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0005869 name: maxillary process of inferior nasal concha def: "From the lower border of the inferior nasal concha, a thin lamina, the maxillary process, curves downward and lateralward; it articulates with the maxilla and forms a part of the medial wall of the maxillary sinus." [Wikipedia:Maxillary_process_of_inferior_nasal_concha] synonym: "maxillary process of inferior concha" EXACT [FMA:54741] synonym: "maxillary process of inferior nasal turbinate" EXACT [FMA:54741] synonym: "maxillary process of inferior turbinate" EXACT [FMA:54741] synonym: "processus maxillaris (concha nasalis inferior)" EXACT [FMA:54741] synonym: "processus maxillaris conchae nasalis inferioris" EXACT [FMA:54741, FMA:TA] xref: FMA:54741 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:0005922 ! inferior nasal concha [Term] id: UBERON:0005870 name: olfactory pit def: "By the upgrowth of the surrounding parts the olfactory areas are converted into pits, the olfactory pits, which indent the fronto-nasal process and divide it into a medial and two lateral nasal processes[WP]. an indentation of the olfactory placode which ends when the pits hollows out to form the nasopharynx[GO]." [GO:0060166, Wikipedia:Olfactory_pit] comment: we represent the relationship as develops from, though in fact the pit is formed as an indentation in the placode synonym: "nasal pit" EXACT [XAO:0000275] xref: AAO:0011068 xref: EFO:0003496 xref: EHDAA:4772 xref: EHDAA2:0001295 xref: EMAPA:16800 xref: SCTID:361485001 xref: XAO:0000275 is_a: UBERON:0005423 ! developing anatomical structure relationship: develops_from UBERON:0003050 ! olfactory placode relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0005871 name: palatine process of maxilla def: "The palatine process of the maxilla (palatal process), thick and strong, is horizontal and projects medialward from the nasal surface of the bone. It forms a considerable part of the floor of the nose and the roof of the mouth and is much thicker in front than behind. Its inferior surface is concave, rough and uneven, and forms, with the palatine process of the opposite bone, the anterior three-fourths of the hard palate. It is perforated by numerous foramina for the passage of the nutrient vessels; is channelled at the back part of its lateral border by a groove, sometimes a canal, for the transmission of the descending palatine vessels and the anterior palatine nerve from the spheno-palatine ganglion; and presents little depressions for the lodgement of the palatine glands. When the two maxillae are articulated, a funnel-shaped opening, the incisive foramen, is seen in the middle line, immediately behind the incisor teeth. In this opening the orifices of two lateral canals are visible; they are named the incisive canals or foramina of Stenson; through each of them passes the terminal branch of the descending palatine artery and the nasopalatine nerve. Occasionally two additional canals are present in the middle line; they are termed the foramina of Scarpa, and when present transmit the nasopalatine nerves, the left passing through the anterior, and the right through the posterior canal. On the under surface of the palatine process, a delicate linear suture, well seen in young skulls, may sometimes be noticed extending lateralward and forward on either side from the incisive foramen to the interval between the lateral incisor and the canine tooth. The small part in front of this suture constitutes the premaxilla (os incisivum), which in most vertebrates forms an independent bone; it includes the whole thickness of the alveolus, the corresponding part of the floor of the nose and the anterior nasal spine, and contains the sockets of the incisor teeth. The upper surface of the palatine process is concave from side to side, smooth, and forms the greater part of the floor of the nasal cavity. It presents, close to its medial margin, the upper orifice of the incisive canal. The lateral border of the process is incorporated with the rest of the bone. The medial border is thicker in front than behind, and is raised above into a ridge, the nasal crest, which, with the corresponding ridge of the opposite bone, forms a groove for the reception of the vomer. The front part of this ridge rises to a considerable height, and is named the incisor crest; it is prolonged forward into a sharp process, which forms, together with a similar process of the opposite bone, the anterior nasal spine. The posterior border is serrated for articulation with the horizontal part of the palatine bone." [Wikipedia:Palatine_process_of_maxilla] synonym: "palatal process" EXACT [Wikipedia:Palatine_process_of_maxilla] synonym: "palatine process" EXACT [Wikipedia:Palatine_process_of_maxilla] synonym: "processus palatinus (maxilla)" EXACT [FMA:52896] xref: FMA:52896 xref: SCTID:368870009 is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0004529 ! anatomical projection is_a: UBERON:0004530 ! implied link automatically realized ! bony projection relationship: part_of UBERON:0002397 ! maxilla [Term] id: UBERON:0005872 name: 1st arch branchial groove xref: EHDAA:575 xref: EHDAA2:0000008 xref: EMAPA:16119 xref: OG:0000969 is_a: UBERON:0005879 ! implied link automatically realized ! branchial groove relationship: part_of UBERON:0004362 intersection_of: UBERON:0005879 ! branchial groove intersection_of: part_of UBERON:0004362 ! mandibular arch [Term] id: UBERON:0005873 name: 2nd arch branchial groove xref: EHDAA:613 xref: EHDAA2:0000054 xref: EMAPA:16396 xref: OG:0000972 is_a: UBERON:0005879 ! implied link automatically realized ! branchial groove relationship: part_of UBERON:0003066 intersection_of: UBERON:0005879 ! branchial groove intersection_of: part_of UBERON:0003066 ! hyoid arch [Term] id: UBERON:0005874 name: 3rd arch branchial groove xref: EHDAA:1082 xref: EHDAA2:0000071 xref: EMAPA:16581 xref: OG:0000973 is_a: UBERON:0005879 ! implied link automatically realized ! branchial groove relationship: part_of UBERON:0003114 intersection_of: UBERON:0005879 ! branchial groove intersection_of: part_of UBERON:0003114 ! pharyngeal arch 3 [Term] id: UBERON:0005875 name: 4th arch branchial groove xref: EHDAA:1665 xref: EHDAA2:0000088 xref: EMAPA:16761 xref: OG:0000968 is_a: UBERON:0005879 ! implied link automatically realized ! branchial groove relationship: part_of UBERON:0003115 intersection_of: UBERON:0005879 ! branchial groove intersection_of: part_of UBERON:0003115 ! pharyngeal arch 4 [Term] id: UBERON:0005876 name: genital tubercle def: "A genital tubercle is a body of tissue present in the development of the urinary and reproductive organs. It forms in the ventral, caudal region of mammalian embryos of both sexes, and eventually develops into a phallus. In the human fetus the genital tubercle develops around week 4 of gestation, and by week 9 becomes recognizably either a clitoris or penis. This should not be confused with the sinus tubercle which is a proliferation of endoderm induced by paramesonephic ducts. Even after the phallus is developed, the term genital tubercle remains, but only as the terminal end of it[2], which develops into either the glans penis or the glans clitoridis. The genital tubercle is sensitive to dihydrotestosterone and rich in 5-alpha-reductase, so that the amount of fetal testosterone present after the second month is a major determinant of phallus size at birth.[WP]." [Wikipedia:Genital_tubercle] comment: todo - add only in taxon mammalia constraint xref: EHDAA:5925 xref: EHDAA2:0000705 xref: EMAPA:17382 xref: SCTID:308798005 is_a: UBERON:0005423 ! developing anatomical structure relationship: develops_from UBERON:0004874 ! somatopleure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0000990 ! reproductive system [Term] id: UBERON:0005879 name: branchial groove def: "the counterpart of the branchial pouch on the ectodermal side. The first pharyngeal groove produces the external auditory meatus.[2] The rest (2, 3, and 4) are overlapped by the growing 2nd pharyngeal arch, and form the floor of the depression termed the cervical sinus, which opens ventrally, and finally obliterated[WP]." [Wikipedia:Pharyngeal_groove] comment: todo - check cleft vs groove synonym: "branchial cleft" RELATED [Wikipedia:Pharyngeal_groove] synonym: "pharyngeal cleft" RELATED [AAO:0010623, Wikipedia:Pharyngeal_groove] synonym: "pharyngeal groove" EXACT [Wikipedia:Pharyngeal_groove] xref: AAO:0010623 xref: ncithesaurus:Pharyngeal_Groove is_a: UBERON:0005423 ! developing anatomical structure relationship: adjacent_to UBERON:0002539 ! pharyngeal arch relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0005880 name: prepollex def: "a rudimentary additional digit on the preaxial side of the thumb of certain amphibians and mammals[dictionary.com]. A prepollex does not contain phalanges nor does it articulate with a metacarpal. It articulates with elements of the carpal (wrist) skeleton[AAO:DB]. Two or more elements located ventral and medial to the metacarpal of digit II(I). The proximal prepollex is small and round whereas distal prepollex 1 is usually large and wedge-shaped. When more elements are present, they are smaller than previous elements." [AAO:0000852, AAO:Fabrezi_and_Alberch_1996, AAO:Maglia_et_al_2007] comment: not homologous to digit 1 of tetrapods. TODO: add articulation relations synonym: "cartilago pre-pollicis" RELATED [AAO:0000852] synonym: "pseudothumb" RELATED [doi:10.1098/rsbl.2009.1038] xref: AAO:0000852 is_a: UBERON:0005881 ! limb outgrowth [Term] id: UBERON:0005881 name: limb outgrowth comment: encompasses digits and prepollex is_a: UBERON:0002529 ! limb segment [Term] id: UBERON:0005882 name: alar plate def: "the mantle layer of the neural tube that lies dorsal to the sulcus limitans and contains primarily sensory neurons and interneurons involved in communication of sensory impulses; the alar plate develops into the dorsal horn in the grey matter of the spinal cord." [MP:0009692, Wikipedia:Alar_plate] synonym: "alar lamina" RELATED [Wikipedia:Alar_lamina] synonym: "spinal cord alar column" EXACT [MP:0009692] synonym: "spinal cord alar lamina" EXACT [MP:0009692] is_a: UBERON:0005423 ! developing anatomical structure relationship: dorsal_to UBERON:0005478 ! sulcus limitans of neural tube relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0001049 ! neural tube [Term] id: UBERON:0005883 name: neural tube lateral wall mantle layer comment: TODO - expand subtypes post EHDAA2-revision, check lateral wall xref: EHDAA2:0001261 is_a: UBERON:0004061 ! neural tube mantle layer relationship: part_of UBERON:0005496 ! neural tube lateral wall [Term] id: UBERON:0005884 name: hyoid arch skeleton synonym: "pharyngeal arch 2 skeleton" EXACT [ZFA:0001276] xref: AAO:0010370 xref: XAO:0003177 xref: ZFA:0001276 is_a: UBERON:0008895 ! implied link automatically realized ! pharyngeal arch skeleton relationship: part_of UBERON:0003066 intersection_of: UBERON:0000075 ! subdivision of skeletal system intersection_of: part_of UBERON:0003066 ! hyoid arch [Term] id: UBERON:0005886 name: pharyngeal arch 3-7 skeleton synonym: "branchial arch skeleton" RELATED SENSU [XAO:0003180] xref: XAO:0003180 xref: ZFA:0000095 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0008895 ! implied link automatically realized ! pharyngeal arch skeleton relationship: part_of UBERON:0008896 intersection_of: UBERON:0000075 ! subdivision of skeletal system intersection_of: part_of UBERON:0008896 ! pharyngeal arch 3-7 relationship: part_of UBERON:0001704 {source="XAO"} ! viscerocranium relationship: part_of UBERON:0008896 {source="ZFA"} ! pharyngeal arch 3-7 [Term] id: UBERON:0005889 name: zygote cortex comment: todo - request from GO synonym: "cortex" RELATED [XAO:0000216] xref: AAO:0010327 xref: EMAPA:18427 xref: XAO:0000216 is_a: UBERON:0000470 ! cell part [Term] id: UBERON:0005890 name: gonad germinal epithelium synonym: "coelomic epithelium" RELATED [EMAPA:17384] synonym: "germinal epithelium" EXACT [EHDAA2:0000706] xref: BTO:0004524 xref: EHDAA2:0000706 xref: EMAPA:17384 xref: EV:0200046 xref: OG:0000629 is_a: UBERON:0000483 ! epithelium is_a: UBERON:0004909 ! implied link automatically realized ! epithelium of gonad relationship: part_of UBERON:0000991 ! gonad relationship: part_of UBERON:0005891 ! coelomic epithelium [Term] id: UBERON:0005891 name: coelomic epithelium def: "The epithelial lining of the coelom." [Wikipedia:Coelomic_epithelium, XAO:0000329] xref: EHDAA2:0004049 xref: XAO:0000329 is_a: UBERON:0000483 ! epithelium is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: develops_from UBERON:0004871 ! somatic layer of lateral plate mesoderm relationship: develops_from UBERON:0004872 ! splanchnic layer of lateral plate mesoderm [Term] id: UBERON:0005892 name: mesonephric early distal tubule def: "The mesonephric equivalent of the ascending limb, or straight distal segment, of metanephric nephrons." [XB:curator] synonym: "mesonephric ascending limb" RELATED [XAO:0000333] synonym: "mesonephric straight distal segment" RELATED [XAO:0000333] xref: AAO:0010391 xref: XAO:0000333 is_a: UBERON:0000083 ! mesonephric tubule relationship: develops_from UBERON:0005322 ! mesonephric nephron [Term] id: UBERON:0005893 name: leg bone xref: MA:0000670 xref: MESH:A.02.835.232.500 is_a: UBERON:0003464 ! hindlimb bone relationship: part_of UBERON:0000978 ! leg [Term] id: UBERON:0005894 name: locomotive weight-bearing appendage def: "A leg is a limb on which an animal walks and stands (GO:0035110)." [GO:0035110, Wikipedia:Leg] comment: Functional grouping, currently encompasses vertebrate and insect legs subset: functional_classification synonym: "leg" RELATED [] is_a: UBERON:0000026 ! appendage [Term] id: UBERON:0005895 name: insect leg def: "The walking appendages of each segment of the ventral adult external thorax[FBbt]. A leg derived from an imaginal disc[GO]." [FBbt:00004640, GO:0007480] synonym: "imaginal disc-derived leg" EXACT [GO:0007480] xref: FBbt:00004640 xref: MAT:0000095 xref: MIAA:0000095 xref: TGMA:0000164 is_a: UBERON:0005894 ! locomotive weight-bearing appendage [Term] id: UBERON:0005896 name: jointed/prehensile appendage def: "A jointed or prehensible appendage used for locomotion or manipulation. Examples: human arm, human leg, octopus tentacle, insect limb[Wikipedia]. A limb is an appendage of an animal used for locomotion or grasping. For example a leg, arm or some types of fin[GO]." [GO:0035108, Wikipedia:Limb_(anatomy)] synonym: "Extremitaet" RELATED [BTO:0001492] synonym: "extremity" RELATED [] synonym: "limb" RELATED [AEO:0000172, BTO:0001492, GO:0035108] xref: AEO:0000172 xref: BTO:0001492 xref: MESH:A.01.378 xref: ncithesaurus:Extremities is_a: UBERON:0000026 ! appendage [Term] id: UBERON:0005897 name: hand bone xref: MA:0000619 xref: SCTID:265809008 is_a: UBERON:0008962 ! implied link automatically realized ! forelimb bone relationship: part_of UBERON:0002398 intersection_of: UBERON:0001474 ! bone intersection_of: part_of UBERON:0002398 ! hand [Term] id: UBERON:0005899 name: foot bone xref: GAID:192 xref: MA:0000643 xref: MESH:A.02.835.232.300 xref: SCTID:361371005 is_a: UBERON:0003464 ! implied link automatically realized ! hindlimb bone relationship: part_of UBERON:0002387 intersection_of: UBERON:0001474 ! bone intersection_of: part_of UBERON:0002387 ! foot [Term] id: UBERON:0005902 name: occipital region def: "Anatomical cluster that is located in the posterior region of the cranium and forms the margin of the foramen magnum and occipital condyles." [TAO:0001414] comment: TODO - check synonym: "basicranial region" EXACT [ZFA:0001414] xref: AAO:0010199 xref: SCTID:362618001 xref: TAO:0001414 xref: XAO:0003173 xref: ZFA:0001414 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0003128 ! cranium [Term] id: UBERON:0005903 name: duct of seminal vesicle synonym: "ductus excretorius (vesicula seminalis)" EXACT [FMA:19473] synonym: "ductus excretorius glandulae vesiculosae" EXACT [FMA:19473, FMA:TA] synonym: "excretory duct of seminal gland" EXACT [FMA:19473] synonym: "seminal vesicle duct" EXACT [FMA:19473] xref: EMAPA:29282 xref: FMA:19473 xref: SCTID:279675008 is_a: UBERON:0000058 ! duct is_a: UBERON:0005904 ! implied link automatically realized ! duct of male reproductive system relationship: part_of UBERON:0000998 ! seminal vesicle [Term] id: UBERON:0005904 name: duct of male reproductive system subset: grouping_class is_a: UBERON:0000058 ! implied link automatically realized ! duct is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0000079 intersection_of: UBERON:0000058 ! duct intersection_of: part_of UBERON:0000079 ! male reproductive system [Term] id: UBERON:0005905 name: insect labrum def: "A mouthpart of insects." [Wikipedia:Insect_mouthparts#Labrum] synonym: "insect labium" EXACT [BTO:0004104] synonym: "labium" RELATED [BTO:0004104] synonym: "labrum" RELATED [BTO:0004104] xref: BTO:0004104 xref: FBbt:00004522 xref: HAO:0000456 xref: TADS:0000039 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0000165 ! mouth [Term] id: UBERON:0005906 name: serous sac def: "Organ with organ cavity, which has as parts a serous membrane and a serous cavity . Examples: pleural sac, pericardial sac, tendon sheath, bursa.[FMA]" [FMA:9689] xref: FMA:9689 xref: SCTID:362890006 is_a: UBERON:0000062 ! organ [Term] id: UBERON:0005908 name: conjunctival sac def: "Serous sac, which has as parts the conjunctiva and the cavity of conjunctiva. Examples: There are only two conjunctival sacs, the right and the left.[FMA]" [FMA:20291, FMA:FMA] xref: EMAPA:18233 xref: FMA:20291 xref: SCTID:362531001 is_a: UBERON:0005906 ! serous sac relationship: part_of UBERON:0000019 ! camera-type eye relationship: part_of UBERON:0001811 ! conjunctiva [Term] id: UBERON:0005910 name: transitional epithelium def: "Multilaminar epithelium, which of consists of more than one layer of epithelial cells, in contact with a basement membrane, that can undergo distention and contraction without losing its integrity and consistency. Examples: urothelium.[FMA]" [FMA:63914, FMA:FMA, Wikipedia:Transitional_epithelium] comment: see comments for urothelium synonym: "epithelium transitionale" EXACT [FMA:63914] synonym: "urothelium" NARROW [EMAPA:28089, Wikipedia:Transitional_epithelium] xref: BTO:0003906 xref: FMA:63914 xref: MESH:A.10.272.850 xref: ncithesaurus:Transitional_Epithelium xref: SCTID:30117005 is_a: UBERON:0000486 ! multilaminar epithelium is_a: UBERON:0005911 ! endo-epithelium [Term] id: UBERON:0005911 name: endo-epithelium def: "Epithelium that derives from the endoderm. Examples: urothelium, transitional epithelium of ureter, epithelium of prostatic gland.[FMA]" [FMA:69065, FMA:FMA] xref: FMA:69065 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: develops_from UBERON:0000925 intersection_of: UBERON:0000483 ! epithelium intersection_of: develops_from UBERON:0000925 ! endoderm [Term] id: UBERON:0005912 name: transitional epithelium of major calyx synonym: "urothelium of major calyx" EXACT [OBOL:automatic] xref: FMA:263266 is_a: UBERON:0003350 ! implied link automatically realized ! epithelium of mucosa is_a: UBERON:0004788 ! implied link automatically realized ! kidney pelvis urothelium relationship: part_of UBERON:0005007 intersection_of: UBERON:0001254 ! urothelium of ureter intersection_of: part_of UBERON:0005007 ! mucosa of major calyx [Term] id: UBERON:0005913 name: zone of bone organ synonym: "bone organ zone" EXACT [FMA:10483] xref: FMA:10483 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004765 ! skeletal element relationship: part_of UBERON:0001474 ! bone [Term] id: UBERON:0005919 name: supreme nasal concha def: "a thin bony plate occasionally found projecting from the inner wall of the ethmoid labyrinth, above the bony superior nasal concha, and the mucous membrane covering the plate." [http://medical-dictionary.thefreedictionary.com/supreme+nasal+concha] synonym: "concha nasi suprema" EXACT [FMA:57457, FMA:TA] synonym: "highest nasal concha" EXACT [FMA:57457] synonym: "supreme nasal turbinate" EXACT [FMA:57457] synonym: "supreme turbinate" EXACT [FMA:57457] xref: FMA:57457 xref: SCTID:361935003 is_a: UBERON:0003973 ! nasal concha of ethmoid bone [Term] id: UBERON:0005920 name: superior nasal concha def: "The back part of the medial surface of the labyrinth of ethmoid is subdivided by a narrow oblique fissure, the superior meatus of the nose, bounded above by a thin, curved plate, the superior nasal concha. The bone found in superior nasal concha is part of the ethmoid bone." [Wikipedia:Superior_nasal_concha] synonym: "superior concha" RELATED [Wikipedia:Superior_nasal_concha] synonym: "superior nasal turbinate" EXACT [FMA:57458] synonym: "superior turbinate" EXACT [FMA:57458] xref: FMA:57458 xref: SCTID:361934004 is_a: UBERON:0003973 ! nasal concha of ethmoid bone [Term] id: UBERON:0005921 name: middle nasal concha def: "The medial surface of the labyrinth of ethmoid consists of a thin lamella, which descends from the under surface of the cribriform plate, and ends below in a free, convoluted margin, the middle nasal concha. It is rough, and marked above by numerous grooves, directed nearly vertically downward from the cribriform plate; they lodge branches of the olfactory nerves, which are distributed to the mucous membrane covering the superior nasal concha." [Wikipedia:Middle_nasal_concha] synonym: "middle concha" RELATED [Wikipedia:Middle_nasal_concha] synonym: "middle nasal turbinate" EXACT [FMA:57459] synonym: "middle turbinate" EXACT [FMA:57459] xref: FMA:57459 xref: SCTID:361933005 is_a: UBERON:0003973 ! nasal concha of ethmoid bone [Term] id: UBERON:0005922 name: inferior nasal concha def: "The inferior nasal concha (Inferior Turbinated Bone) is one of the turbinates in the nose. It extends horizontally along the lateral wall of the nasal cavity [Fig. 1] and consists of a of spongy bone, curled upon itself like a scroll. Each inferior nasal concha is considered a facial pair of bones since they arise from the maxillae bones and projects horizontally into the nasal cavity. They are also termed 'inferior nasal turbinates' because they function similar to that of a turbine. As the air passes through the turbinates, the air is churned against these mucosa-lined bones in order to receive warmth, moisture and cleansing. Superior to inferior nasal concha are the middle nasal concha and superior nasal concha which arise from the cranial portion of the skull. Hence, these two are considered as a part of the cranial bones. It has two surfaces, two borders, and two extremities." [Wikipedia:Inferior_nasal_concha] comment: note that in FMA this is not classified with the other turbinates. In Uberon we subdivide the turbinates into the ethmoturbinates and the inferior turbinate. TODO: check ethmoidal process of inferior nasal concha synonym: "inferior concha" RELATED [Wikipedia:Inferior_nasal_concha] synonym: "inferior nasal turbinate" EXACT [FMA:54736] synonym: "inferior turbinate" EXACT [FMA:54736] synonym: "inferior turbinated" RELATED [Wikipedia:Inferior_nasal_concha] xref: FMA:54736 xref: ncithesaurus:Inferior_Turbinate xref: SCTID:361932000 is_a: UBERON:0001762 ! nasal concha is_a: UBERON:0003462 ! implied link automatically realized ! viscerocranium bone is_a: UBERON:0008001 {source="FMA"} ! irregular bone relationship: develops_from UBERON:0006332 {source="ISBN10:1588903958"} ! nasal capsule relationship: part_of UBERON:0001704 ! viscerocranium [Term] id: UBERON:0005925 name: ethmoidal process of inferior nasal concha def: "Behind the lacrimal process of the inferior nasal conchae lies a broad, thin plate, the ethmoidal process, which ascends to join the uncinate process of the ethmoid; from its lower border a thin lamina, the maxillary process, curves downward and lateralward; it articulates with the maxilla and forms a part of the medial wall of the maxillary sinus." [Wikipedia:Ethmoidal_process_of_inferior_nasal_concha] synonym: "ethmoidal process of inferior concha" EXACT [FMA:54742] synonym: "ethmoidal process of inferior nasal turbinate" EXACT [FMA:54742] synonym: "ethmoidal process of inferior turbinate" EXACT [FMA:54742] synonym: "processus ethmoidalis (concha nasalis inferior)" EXACT [FMA:54742] synonym: "processus ethmoidalis conchae nasalis inferioris" EXACT [FMA:54742, FMA:TA] xref: FMA:54742 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:0005922 ! inferior nasal concha [Term] id: UBERON:0005928 name: external naris def: "Surface structure that provides one of the small external openings of the head that give passage to air for breathing." [OMD:nostril, Wikipedia:Nostril] comment: Fish have two pairs of external nostrils. There is a case for classifying ZFA:0001427 here as well as anterior naris. subset: vertebrate_core synonym: "anterior naris" EXACT [ZFA:0001427] synonym: "blowhole" NARROW [Wikipedia:Blowhole_(anatomy)] synonym: "external nares" EXACT PLURAL [] synonym: "nostril" EXACT [FMA:59645, XAO:0003033] xref: AAO:0000024 xref: AAO:0010358 xref: EHDAA:9085 xref: EHDAA2:0001275 xref: EMAPA:17848 xref: FMA:59645 xref: MA:0001320 xref: ncithesaurus:Nostril xref: OG:0000544 xref: OpenCyc:Mx4rvViCLpwpEbGdrcN5Y29ycA xref: SCTID:276165005 xref: TAO:0001427 xref: XAO:0003033 xref: ZFA:0001427 is_a: UBERON:0000003 {source="MA"} ! naris is_a: UBERON:0003102 {source="ZFA"} ! surface structure relationship: part_of UBERON:0000004 ! olfactory apparatus [Term] id: UBERON:0005931 name: primary choana def: "initial opening of the nasal pits and olfactory sac of the embryo into the rostral part of the primordial oronasal cavity, before the formation of the secondary palate." [http://www.drugs.com/dict/primary-choana.html] comment: TODO - check. MA says part_of external naris. xref: EHDAA:9087 xref: EMAPA:17851 xref: MA:0001322 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0005928 ! external naris [Term] id: UBERON:0005932 name: bulb of hair follicle comment: see https://sourceforge.net/tracker/?func=detail&aid=3213510&group_id=76834&atid=1205376 synonym: "coat hair bulb" NARROW SENSU [MA:0000161] synonym: "hair bulb" EXACT [FMA:70666] synonym: "hair follicle bulb" EXACT [FMA:70666] xref: EMAPA:18770 xref: FMA:70666 xref: MA:0000161 xref: MA:0000783 xref: ncithesaurus:Hair_Bulb xref: SCTID:361360009 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0002073 ! hair follicle [Term] id: UBERON:0005933 name: hair root sheath comment: see https://sourceforge.net/tracker/?func=detail&aid=3213510&group_id=76834&atid=1205376 xref: EMAPA:18772 xref: MA:0000162 xref: MA:0000784 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0005932 ! bulb of hair follicle [Term] id: UBERON:0005941 name: hair inner root sheath def: "The cells of the inner root sheath are interlocked with those of the cuticle of the hair, firmly anchoring the hair in the follicle. The inner root sheath must grow at the same rate as the hair, or faster as it molds and guides the shaft in its passage outward[BTO]. the multilayered tube composed of terminally differentiated hair follicle keratinocytes that is surrounded by the outer root sheath; the layers of the inner root sheath include the companion layer, Henle's layer, Huxley's layer and the inner root sheath cuticle[MP]." [https://sourceforge.net/tracker/?func=detail&aid=3213510&group_id=76834&atid=1205376, Keratin.com:http\://www.keratin.com/, MP:0010685] synonym: "hair follicle inner root sheath" EXACT [MP:0010685] synonym: "inner root sheath" RELATED [BTO:0003971] synonym: "inner root sheath of hair follicle" EXACT [FMA:70935] synonym: "inner sheath of hair follicle" EXACT [FMA:70935] synonym: "internal root sheath of hair follicle" EXACT [FMA:70935] xref: BTO:0003971 xref: FMA:70935 xref: MA:0000779 xref: MA:0000785 is_a: UBERON:0005933 ! hair root sheath [Term] id: UBERON:0005942 name: hair outer root sheath def: "It surrounds the hair follicle like a sleeve all the way to the bulb. The outer root sheath is essentially a stratified epithelium that is contiguous with the epidermis." [https://sourceforge.net/tracker/?func=detail&aid=3213510&group_id=76834&atid=1205376, Keratin.com:http\://www.keratin.com/] synonym: "external root sheath of hair follicle" EXACT [FMA:70943] synonym: "hair follicle outer root sheath" EXACT [BTO:0003969] synonym: "ORS" RELATED [BTO:0003969] synonym: "outer root sheath" RELATED [BTO:0003969] synonym: "outer root sheath of hair follicle" EXACT [FMA:70943] xref: BTO:0003969 xref: FMA:70943 xref: MA:0000780 xref: MA:0000786 is_a: UBERON:0005933 ! hair root sheath [Term] id: UBERON:0005943 name: hair root sheath matrix xref: MA:0000781 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0005933 ! hair root sheath [Term] id: UBERON:0005944 name: axial skeleton def: "Subdivision of skeleton which consists of skull, set of all vertebrae, set of all ribs and sternum[FMA]." [FMA:71221, Wikipedia:Axial_skeleton] comment: note that in versions of FMA prior to v3, axial skeleton did _not_ include the skull subset: uberon_slim xref: AAO:0000963 xref: EMAPA:17214 xref: EMAPA:18043 xref: FMA:71221 xref: MA:0000308 xref: ncithesaurus:Axial_Skeleton xref: SCTID:361725000 xref: VAO:0000056 xref: XAO:0004011 is_a: UBERON:0000075 ! subdivision of skeletal system relationship: develops_from UBERON:0003089 ! sclerotome relationship: part_of UBERON:0004288 ! skeleton [Term] id: UBERON:0005945 name: neurocranial trabecula synonym: "neurocranial trabeculae" EXACT PLURAL [ZFA:0001321] synonym: "trabecula" BROAD SENSU [ZFA:0001321] synonym: "trabecular cartilage" BROAD [ZFA:0001321] xref: EFO:0003677 xref: ZFA:0001321 is_a: UBERON:0000440 ! trabecula is_a: UBERON:0003932 ! chondrocranium cartilage relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0003112 ! olfactory region [Term] id: UBERON:0005946 name: outflow tract of atrium synonym: "outflow part of atrium" EXACT [FMA:14141] xref: FMA:14141 is_a: UBERON:0004145 ! implied link automatically realized ! outflow tract relationship: part_of UBERON:0002081 intersection_of: UBERON:0004145 ! outflow tract intersection_of: part_of UBERON:0002081 ! cardiac atrium relationship: continuous_with UBERON:0002082 ! cardiac ventricle [Term] id: UBERON:0005953 name: outflow part of right ventricle def: "Outflow part of ventricle which is continuous with the pulmonary trunk[FNA]. The right ventricular outflow tract (RVOT) is an infundibular extension of the ventricular cavity which connects to the pulmonary artery[WP]." [FMA:7216] synonym: "conus arteriosus (infundibulum)" EXACT [FMA:7216] synonym: "infundibulum of right ventricle" EXACT [FMA:7216] synonym: "outflow tract of right ventricle" EXACT [FMA:7216] synonym: "pulmonary conus" EXACT [FMA:7216] synonym: "RVOT" EXACT [] xref: FMA:7216 xref: SCTID:244379003 is_a: UBERON:0005337 ! implied link automatically realized ! outflow tract of ventricle relationship: part_of UBERON:0002080 intersection_of: UBERON:0005337 ! outflow tract of ventricle intersection_of: part_of UBERON:0002080 ! heart right ventricle relationship: continuous_with UBERON:0002333 ! pulmonary trunk relationship: develops_from UBERON:0009889 {source="PMID:17276708"} ! secondary heart field [Term] id: UBERON:0005956 name: outflow part of left ventricle def: "Outflow part of ventricle which is continuous with the aorta[FMA]. The left ventricular outflow tract (LVOT), which connects to the aorta, is nearly indistinguishable from the rest of the ventricle[WP]." [FMA:9473] synonym: "aortic vestibule" EXACT [FMA:9473] synonym: "left ventricular outflow" EXACT [FMA:9473] synonym: "LVOT" EXACT [] synonym: "outflow tract of left ventricle" EXACT [FMA:9473] synonym: "vestibulum aortae" EXACT [FMA:9473, FMA:TA] xref: FMA:9473 xref: SCTID:264070001 is_a: UBERON:0005337 ! implied link automatically realized ! outflow tract of ventricle relationship: part_of UBERON:0002084 intersection_of: UBERON:0005337 ! outflow tract of ventricle intersection_of: part_of UBERON:0002084 ! heart left ventricle [Term] id: UBERON:0005965 name: outflow part of right atrium def: "Outflow part of atrium which consists of wall and cavity of the outflow part of right atrium and the tricuspid valve.[FMA]" [FMA:9550, FMA:FMA] synonym: "main part of right atrium" EXACT [FMA:9550] synonym: "outflow tract of right atrium" EXACT [FMA:9550] xref: FMA:9550 is_a: UBERON:0005946 ! implied link automatically realized ! outflow tract of atrium relationship: part_of UBERON:0002078 intersection_of: UBERON:0005946 ! outflow tract of atrium intersection_of: part_of UBERON:0002078 ! right atrium [Term] id: UBERON:0005966 name: outflow part of left atrium synonym: "main part of left atrium" EXACT [FMA:9551] synonym: "outflow tract of left atrium" EXACT [FMA:9551] xref: FMA:9551 is_a: UBERON:0005946 ! implied link automatically realized ! outflow tract of atrium relationship: part_of UBERON:0002079 intersection_of: UBERON:0005946 ! outflow tract of atrium intersection_of: part_of UBERON:0002079 ! left atrium [Term] id: UBERON:0005967 name: conotruncal ridge def: "One of the pair of spiral mesenchymal swellings in the primordial ventricular outflow tract, that eventually fuse to form the conotruncal septum, dividing the subvalvular outflow tract and contributing to the membranous interventricular septum[MP]" [MP:0010585, PMID:8823298] synonym: "aortico-pulmonary spiral ridges" EXACT [MP:0010585] synonym: "bulbar ridge" EXACT [MP:0010585] synonym: "conotruncal cushion" EXACT [MP:0010585] synonym: "endocardial ridge" EXACT [MP:0010585] synonym: "outflow tract cushion" EXACT [MP:0010585] synonym: "outflow tract endocardial cushion" EXACT [MP:0010585] xref: EHDAA:1914 xref: EHDAA2:0000194 xref: EMAPA:17332 xref: EMAPA:17867 xref: OG:0001385 is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue is_a: UBERON:0009751 ! implied link automatically realized ! cardiac mesenchyme relationship: part_of UBERON:0004706 ! bulbus cordis relationship: part_of UBERON:0005337 ! outflow tract of ventricle [Term] id: UBERON:0005968 name: infundibulum of hair follicle synonym: "dermal piliary canal" EXACT [FMA:70722] synonym: "hair follicle infundibulum" EXACT [FMA:70722] xref: FMA:70722 xref: ncithesaurus:Hair_Follicle_Infundibulum xref: SCTID:319522000 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure disjoint_from: UBERON:0002434 ! pituitary stalk relationship: part_of UBERON:0002073 ! hair follicle [Term] id: UBERON:0005969 name: reticulum trabeculare alt_id: UBERON:0004028 def: "The trabecular meshwork is an area of tissue in the eye located around the base of the cornea, near the ciliary body, and is responsible for draining the aqueous humor from the eye via the anterior chamber (the chamber on the front of the eye covered by the cornea). The tissue is spongy and lined by trabeculocytes; it allows fluid to drain into a set of tubes called Schlemm's canal flowing into the blood system[WP]. A porelike structure surrounding the entire circumference of the anterior chamber through which aqueous humor circulates to the canal of Schlemm.[GAID] the pore-like structure surrounding the entire circumference of the anterior chamber through which aqueous humor circulates[MP]." [MP:0005203, Wikipedia:Trabecular_meshwork] comment: TODO check syns - ligaments synonym: "cribiform ligament" RELATED [Wikipedia:Trabecular_meshwork] synonym: "Hueck's ligament" RELATED [BTO:0001605] synonym: "iridis" RELATED [Wikipedia:Trabecular_meshwork] synonym: "ligamentum peactin-tum iridis" RELATED [Wikipedia:Trabecular_meshwork] synonym: "ligamentum pectinatum" RELATED [Wikipedia:Trabecular_meshwork] synonym: "ligamentum pectinatum anguli iridocornealis" RELATED [BTO:0001605] synonym: "ligamentum pectinatum iridis" RELATED [Wikipedia:Trabecular_meshwork] synonym: "pectinate ligament" RELATED [BTO:0001605] synonym: "pectinate ligament of iris" RELATED [BTO:0001605] synonym: "scleral trabeculae" RELATED [Wikipedia:Trabecular_meshwork] synonym: "scleral trabecular" RELATED [Wikipedia:Trabecular_meshwork] synonym: "scleral trabecule" RELATED [Wikipedia:Trabecular_meshwork] synonym: "scribiform ligament" RELATED [Wikipedia:Trabecular_meshwork] synonym: "trabecular mesh" RELATED [Wikipedia:Trabecular_meshwork] synonym: "trabecular meshwork" RELATED [BTO:0001605] synonym: "trabecular meshwork of the eye" EXACT [Wikipedia:Trabecular_meshwork] xref: BTO:0001605 xref: EFO:0003077 xref: EV:0100352 xref: GAID:897 xref: MESH:A.09.371.060.932 xref: ncithesaurus:Trabecular_Meshwork is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0000019 ! camera-type eye relationship: part_of UBERON:0003956 ! aqueous drainage system relationship: surrounds UBERON:0001766 ! anterior chamber of eyeball [Term] id: UBERON:0005970 name: brain commissure is_a: UBERON:0001020 ! implied link automatically realized ! commissure is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain relationship: part_of UBERON:0000955 intersection_of: UBERON:0001020 ! commissure intersection_of: part_of UBERON:0000955 ! brain [Term] id: UBERON:0005971 name: amniotic fold def: "the folded edge of the amnion where it rises over and finally encloses the embryo[TFD]." [http://medical-dictionary.thefreedictionary.com/amniotic+fold] xref: EMAPA:16076 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0000305 ! amnion [Term] id: UBERON:0005972 name: tunnel of Corti def: "A triangular, fluid-filled space normally found between the inner and outer rows of supporting pillar cells in the organ of Corti." [MP:0003151] is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0002227 ! spiral organ of cochlea [Term] id: UBERON:0005973 name: blood-inner ear barrier def: "the function of the group of barriers and transport systems which regulate the transport of various substances from blood to inner ear tissue and maintain the microhomeostasis and functional integrity of the inner ear; the endothelial cells of the inner ear blood capillaries, linked to each other by tight junctions, represent the main component of the blood-inner ear barrier" [MP:0004999] is_a: UBERON:0001981 ! blood vessel is_a: UBERON:0003496 ! implied link automatically realized ! head blood vessel is_a: UBERON:0006937 ! implied link automatically realized ! inner ear epithelium relationship: part_of UBERON:0001846 ! internal ear [Term] id: UBERON:0005974 name: posterior cerebellomedullary cistern def: "A space between the cerebellum and the dorsal surface of the medulla[MP]. The cisterna magna (or cerebellomedullary cistern) is one of three principal openings in the subarachnoid space between the arachnoid and pia mater layers of the meninges surrounding the brain. The openings are collectively referred to as cisterns. The cisterna magna is located between the cerebellum and the dorsal surface of the medulla oblongata. Cerebrospinal fluid produced in the fourth ventricle drains into the cisterna magna via the lateral apertures and median aperture. The two other principal cisterns are the pontine cistern located between the pons and the medulla, and the interpeduncular cistern located between the cerebral peduncles. Cerebral spinal fluid can also be obtained by puncture of the cisterna magna (cistern puncture)." [MP:0009036, Wikipedia:Cisterna_magna] synonym: "cisterna cerebellomedullaris posterior" EXACT [MP:0009033] synonym: "cisterna magna" EXACT [MP:0009033] xref: FMA:83721 xref: GAID:690 xref: MESH:A.08.186.566.166.686.351 xref: ncithesaurus:Cisterna_Magna xref: SCTID:280391002 is_a: UBERON:0004049 ! cerebellomedullary cistern [Term] id: UBERON:0005975 name: hair follicle bulge def: "the area located in the bottom of the permanent portion of a resting (telogen) hair follicle where the cells of the external root sheath of the hair follicle are contiguous with the basal layer of the epidermis; this portion of the follicle is involved in the generation of a new hair at the onset of the hair growth cycle (anagen) and contains the hair follicle stem cells" [MP:0009759] synonym: "bulge of hair follicle" EXACT [FMA:70735] xref: BTO:0004904 xref: FMA:70735 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0002073 ! hair follicle [Term] id: UBERON:0005976 name: ansiform lobule crus I def: "." [MP:0010002] comment: TODO - check synonym: "crus II of the ansiform lobule (HVII)" EXACT [NIF_GrossAnatomy:nlx_anat_20081209] synonym: "crus primum lobuli ansiformis cerebelli [h vii a]" EXACT [FMA:72524, FMA:TA] synonym: "first crus of ansiform lobule of cerebellum [h vii a]" EXACT [FMA:72524] synonym: "hemispheric lobule viibi" EXACT [NIF_GrossAnatomy:nlx_anat_20081209] synonym: "lobulus ansiform crus II" EXACT [NIF_GrossAnatomy:nlx_anat_20081209] synonym: "lobulus semilunaris inferior" EXACT [NIF_GrossAnatomy:nlx_anat_20081209] synonym: "lobulus semilunaris superior cerebelli" EXACT [FMA:72524, FMA:TA] synonym: "posterior superior lobule" EXACT [FMA:72524] synonym: "semilunar lobule-2 (superior)" EXACT [FMA:72524] synonym: "superior semilunar lobule" EXACT [FMA:72524] synonym: "superior semilunar lobule " EXACT [FMA:72524] synonym: "superior semilunar lobule of cerebellum" EXACT [FMA:72524] xref: ABA:ANcr1 xref: FMA:72524 xref: NIF_GrossAnatomy:nlx_anat_20081209 is_a: UBERON:0005348 ! ansiform lobule [Term] id: UBERON:0005977 name: ansiform lobule crus II def: "." [MP:0010003] comment: TODO - check synonym: "crus I of the ansiform lobule (HVII)" EXACT [NIF_GrossAnatomy:nlx_anat_20081208] synonym: "crus secundum lobuli ansiformis cerebelli [h vii a" EXACT [FMA:72525, FMA:TA] synonym: "hemispheric lobule viia" EXACT [NIF_GrossAnatomy:nlx_anat_20081208] synonym: "inferior semilunar lobule" EXACT [FMA:72525] synonym: "inferior semilunar lobule of cerebellum" EXACT [FMA:72525] synonym: "lobulus ansiform crus I" EXACT [NIF_GrossAnatomy:nlx_anat_20081208] synonym: "lobulus semilunaris inferior cerebelli" EXACT [FMA:72525, FMA:TA] synonym: "lobulus semilunaris superior" EXACT [NIF_GrossAnatomy:nlx_anat_20081208] synonym: "posterior inferior lobule" EXACT [FMA:72525] synonym: "second crus of ansiform lobule of cerebellum [h vii a]" EXACT [FMA:72525] synonym: "semilunar lobule-2 (inferior)" EXACT [FMA:72525] xref: ABA:ANcr2 xref: FMA:72525 xref: NIF_GrossAnatomy:nlx_anat_20081208 is_a: UBERON:0005348 ! ansiform lobule [Term] id: UBERON:0005978 name: olfactory bulb outer nerve layer def: "the outermost layer of the olfactory bulb; consists primarily of olfactory afferent axons and ensheathing glia" [MP:0010057] is_a: UBERON:0004001 ! olfactory bulb layer relationship: part_of UBERON:0002264 ! olfactory bulb [Term] id: UBERON:0005979 name: crista terminalis def: "the vertical crest of the interior wall of the right atrium that lies to the right of the sinus of the vena cava and separates this from the remainder of the right atrium" [MP:0010495] synonym: "crista terminalis atrii dextri" EXACT [FMA:9236, FMA:TA] synonym: "crista terminalis cordis" EXACT [FMA:9236] synonym: "crista terminalis of right atrium" EXACT [FMA:9236] xref: FMA:9236 xref: SCTID:277693004 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0002078 ! right atrium [Term] id: UBERON:0005980 name: pectinate muscle def: "the prominent ridges of atrial myocardium located on the inner surface of most of the right atrium and both the right and left auricular regions[MP]." [MP:0010496, Wikipedia:Musculi_pectinati] synonym: "musculi pectinati" EXACT PLURAL [Wikipedia:Musculi_pectinati] synonym: "musculus pectinatus" EXACT [FMA:12226] xref: FMA:12226 xref: SCTID:277718001 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0002302 ! myocardium of atrium [Term] id: UBERON:0005981 name: vena cava sinus def: "the portion of the cavity of the right atrium of the heart that receives the blood from the vena cavae and is separated from the rest of the atrium by the crista terminalis" [MP:0010497] synonym: "cavity of inflow part of right atrium" EXACT [FMA:13246] synonym: "posterior right atrial cavity" EXACT [FMA:13246] synonym: "sinus venarum cavarum" EXACT [FMA:13246] xref: FMA:13246 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0002078 ! right atrium [Term] id: UBERON:0005982 name: Bachmann's bundle def: "the impulse conduction tract that originates in the sinoatrial node and transmits signal to the left atrium" [MP:0010517, Wikipedia:Bachmann's_bundle] synonym: "anterior interatrial band" EXACT [UBERON:gg] xref: http://upload.wikimedia.org/wikipedia/commons/thumb/0/05/ConductionsystemoftheheartwithouttheHeart.png/350px-ConductionsystemoftheheartwithouttheHeart.png is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0002350 {source="MP"} ! conducting system of heart [Term] id: UBERON:0005983 name: heart layer def: "the laminar structure of the heart" [MP:0010545] is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004923 ! implied link automatically realized ! organ component layer relationship: part_of UBERON:0000948 intersection_of: UBERON:0004923 ! organ component layer intersection_of: part_of UBERON:0000948 ! heart [Term] id: UBERON:0005984 name: subendocardium layer def: "the layer of loose fibrous tissue located between the endocardium and myocardium which contains the nerves and the impulse-conducting system (Purkinje fibers) of the heart" [MP:0010546] is_a: UBERON:0005983 ! heart layer [Term] id: UBERON:0005985 name: coronary vessel def: "any of the arteries or veins that supply blood to the heart or return blood from the heart muscles to the circulation" [MP:0010551] comment: TODO - change relation from part_of xref: MESH:A.07.231.114.269 is_a: UBERON:0000055 ! implied link automatically realized ! vessel is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0000948 intersection_of: UBERON:0000055 ! vessel intersection_of: part_of UBERON:0000948 ! heart [Term] id: UBERON:0005986 name: left branch of atrioventricular bundle def: "Subdivision of conducting system of heart which enters the septal myocardium of left ventricle and is continuous with the anterior, septal and posterior divisions of the left branch of the atrioventricular bundle[FMA]. the left branch of the atrioventricular bundle that separates at the bundle of His, descends the septal wall of the left ventricle and connects to the terminal Purkinje fiber[MP]." [FMA:9487, MP:0010566] synonym: "crus sinistrum (fasciculi atrioventricularis)" EXACT [FMA:9487] synonym: "left bundle branch" EXACT [FMA:9487] synonym: "left posterior branch" EXACT [MP:0010566] xref: FMA:9487 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: in_left_side_of UBERON:0002353 ! atrioventricular bundle relationship: part_of UBERON:0002350 {source="FMA"} ! conducting system of heart [Term] id: UBERON:0005987 name: right branch of atrioventricular bundle def: "Subdivision of conducting system of heart which enters the septal myocardium of right ventricle to reach the anterior papillary muscle and then subendocardially to the apex of the heart[FMA]. the right branch of the atrioventricular bundle that separates just below the bundle of His, descends the septal wall of the right ventricle and connects to the terminal Purkinje fibers[MP]." [FMA:9486, MP:0010567] synonym: "crus dextrum (fasciculi atrioventricularis)" EXACT [FMA:9486] synonym: "right bundle" EXACT [FMA:9486, MP:0010567] synonym: "right bundle branch" EXACT [FMA:9486] xref: FMA:9486 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: in_right_side_of UBERON:0002353 ! atrioventricular bundle relationship: part_of UBERON:0002350 {source="FMA"} ! conducting system of heart [Term] id: UBERON:0005988 name: atrium myocardial trabecula def: "the supporting bundles of muscular fibers lining the walls of the atria" [MP:0010581] synonym: "atrial trabecula" EXACT [] synonym: "atrium myocardial trabeculae" EXACT PLURAL [MP:0010581] synonym: "trabecula of atrium" EXACT [] is_a: UBERON:0000440 ! trabecula is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0002302 ! myocardium of atrium [Term] id: UBERON:0005989 name: atrioventricular septum def: "the wall of the heart that separates the right atrium and left ventricle; and is located just above the septal cusp of the tricuspid valve" [MP:0010592] synonym: "membranous atrioventricular septum" EXACT [FMA:7136] xref: FMA:7136 xref: SCTID:280151006 is_a: UBERON:0002099 ! implied link automatically realized ! cardiac septum is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: adjacent_to UBERON:0002078 relationship: adjacent_to UBERON:0002084 intersection_of: UBERON:0002099 ! cardiac septum intersection_of: adjacent_to UBERON:0002078 ! right atrium intersection_of: adjacent_to UBERON:0002084 ! heart left ventricle relationship: develops_from UBERON:0002062 {source="PMID:15797462", source="Wikipedia"} ! endocardial cushion [Term] id: UBERON:0005990 name: aortic valve cusp def: "the three fibrous triangular components and associated flap of the aortic valve" [MP:0010595] synonym: "aortic semilunar valvule" EXACT [FMA:7251] synonym: "aortic valvular cusp" EXACT [FMA:7251] synonym: "cusp of aortic valve" EXACT [FMA:7251] synonym: "semilunar valvule of aortic valve" EXACT [FMA:7251] xref: FMA:7251 xref: SCTID:362026005 is_a: UBERON:0006009 ! cusp of cardiac valve relationship: part_of UBERON:0002137 ! aortic valve [Term] id: UBERON:0005991 name: aortic valve anulus def: "the fibrous ring of the aortic valve that attaches the cusps of aortic valve to the wall of left ventricle, and which consists of portions of the fibrous scallops of the posterior, right anterior and left anterior cusps" [MP:0010598] synonym: "anulus of aortic valve" EXACT [FMA:9502] synonym: "aortic anulus" EXACT [FMA:9502] synonym: "aortic valvar anulus" EXACT [FMA:9502] synonym: "fibrous ring of aortic valve" EXACT [FMA:9502] xref: FMA:9502 is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0006008 ! fibrous ring of heart relationship: part_of UBERON:0002137 ! aortic valve [Term] id: UBERON:0005992 name: pulmonary valve cusp def: "the three fibrous triangular components and associated flap of the pulmonary valve" [MP:0010602] synonym: "cusp of pulmonary valve" EXACT [FMA:7248] synonym: "pulmonary semilunar valvule" EXACT [FMA:7248] synonym: "pulmonary valvular cusp" EXACT [FMA:7248] synonym: "semilunar cusp of pulmonary valve" EXACT [FMA:7248] synonym: "semilunar valvule of pulmonary valve" EXACT [FMA:7248] xref: FMA:7248 is_a: UBERON:0006009 ! cusp of cardiac valve relationship: part_of UBERON:0002146 ! pulmonary valve [Term] id: UBERON:0005993 name: pulmonary valve anulus def: "the fibrous ring of the pulmonary valve that attaches the cusps of pulmonary valve to the wall of right ventricle, and which consists of portions of the fibrous scallops of the anterior, right posterior and left posterior cusps" [MP:0010606] synonym: "anulus of pulmonary valve" EXACT [FMA:9503] synonym: "fibrous ring of pulmonary valve" EXACT [FMA:9503] synonym: "pulmonary anulus" EXACT [FMA:9503] synonym: "pulmonary valvar anulus" EXACT [FMA:9503] xref: FMA:9503 is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0006008 ! fibrous ring of heart relationship: part_of UBERON:0002146 ! pulmonary valve [Term] id: UBERON:0005994 name: chordae tendineae def: "the tendinous strands that connect the papillary muscles on the wall of the ventricles to the leaflets of the atrioventricular valves; the chordae tendineae serve to prevent the AV valves from prolapsing back into the atria" [MP:0010608, Wikipedia:Chordae_tendineae] synonym: "chorda tendinea" EXACT [FMA:12225] xref: FMA:12225 xref: GAID:564 xref: MESH:A.07.541.510.240 xref: ncithesaurus:Chordae_Tendineae is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0002133 ! atrioventricular valve [Term] id: UBERON:0005995 name: mitral valve anulus def: "the fibrous ring of the mitral valve that attaches the cusps of mitral valve to the heart, and which consists of portions of the fibrous scallops of the anterior and posterior cusps" [MP:0010613] synonym: "anulus of mitral valve" EXACT [FMA:9498] synonym: "fibrous ring of mitral valve" EXACT [FMA:9498] synonym: "mitral anulus" EXACT [FMA:9498] synonym: "mitral valvar anulus" EXACT [FMA:9498] xref: FMA:9498 is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0006008 ! fibrous ring of heart relationship: part_of UBERON:0002135 ! mitral valve [Term] id: UBERON:0005996 name: mitral valve cusp def: "the two fibrous components and associated flaps of the mitral valve" [MP:0010614] comment: TODO - add generic parent is_a: UBERON:0006009 ! cusp of cardiac valve relationship: part_of UBERON:0002135 ! mitral valve [Term] id: UBERON:0005997 name: tricuspid valve anulus def: "the fibrous ring of the tricuspid valve that attaches the cusps of tricuspid valve to the heart, and which consists of portions of the fibrous scallops of the anterior cusp (infundibular cusp), the posterior cusp (marginal cusp), and the septal cusp (medial cusp)" [MP:0010621] synonym: "anulus of tricuspid valve" EXACT [FMA:9500] synonym: "fibrous ring of tricuspid valve" EXACT [FMA:9500] synonym: "tricuspid anulus" EXACT [FMA:9500] synonym: "tricuspid valvar anulus" EXACT [FMA:9500] xref: FMA:9500 is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0006008 ! fibrous ring of heart relationship: part_of UBERON:0002134 ! tricuspid valve [Term] id: UBERON:0005998 name: tricuspid valve cusp def: "the three fibrous triangular components and associated flaps of the tricuspid valve" [MP:0010622] comment: TODO - check synonym: "cuspis septalis valvae atrioventricularis dextrae" EXACT [FMA:7240, FMA:TA] synonym: "septal cusp of right atrioventricular valve" EXACT [FMA:7240] synonym: "septal cusp of tricuspid valve" EXACT [FMA:7240] synonym: "septal leaflet of tricuspid valve" EXACT [FMA:7240] synonym: "septal tricuspid leaflet" EXACT [FMA:7240] xref: FMA:7240 xref: SCTID:261417002 is_a: UBERON:0005484 ! tricuspid valve leaflet is_a: UBERON:0006009 ! cusp of cardiac valve relationship: part_of UBERON:0002134 ! tricuspid valve [Term] id: UBERON:0005999 name: aorticopulmonary septum def: "the spiral septum that separates the truncus arteriosus into a ventral pulmonary trunk and the dorsal aorta" [MP:0010650] is_a: UBERON:0002099 ! implied link automatically realized ! cardiac septum relationship: adjacent_to UBERON:0002333 relationship: adjacent_to UBERON:0005805 intersection_of: UBERON:0002099 ! cardiac septum intersection_of: adjacent_to UBERON:0002333 ! pulmonary trunk intersection_of: adjacent_to UBERON:0005805 ! dorsal aorta [Term] id: UBERON:0006001 name: intersomitic artery def: "the small branching sprouts of the dorsal aorta that grow across the medial surface of the somite, turn right angles to grow over that surface and then fuse with other sprouts and form the vertebral arteries adjacent to the neural tube; the intersomitic arteries supply the body wall and persist in the adult as the posterior intercostal, subcostal and the lumbar arteries" [MP:0010662] xref: XAO:0004165 is_a: UBERON:0001637 ! artery is_a: UBERON:0003513 ! implied link automatically realized ! trunk blood vessel is_a: UBERON:0004573 ! implied link automatically realized ! systemic artery relationship: part_of UBERON:0005805 ! dorsal aorta [Term] id: UBERON:0006002 name: vitelline artery def: "the paired arteries that carry blood to the yolk sac from the dorsal aorta; the vitelline arteries give rise to the celiac artery, superior mesenteric artery, and inferior mesenteric artery in the adult" [MP:0010664, Wikipedia:Vitelline_arteries] xref: EHDAA2:0002208 xref: EMAPA:16207 is_a: UBERON:0001637 ! implied link automatically realized ! artery relationship: continuous_with UBERON:0001040 relationship: continuous_with UBERON:0005805 intersection_of: UBERON:0001637 ! artery intersection_of: continuous_with UBERON:0001040 ! yolk sac intersection_of: continuous_with UBERON:0005805 ! dorsal aorta [Term] id: UBERON:0006003 name: skin adnexa def: "the tissue or structures associated with or embedded in the skin such as hair and hair follicles, sweat glands, sebaceous glands and claws or nails" [http://code.google.com/p/caro2/issues/detail?id=5, MP:0010678, Wikipedia:Skin_appendage] comment: editor note - add subclasses based on resolution of CARO tracker item. Also check: adnexal gland is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0002416 ! integumental system [Term] id: UBERON:0006004 name: hair follicle matrix region def: "the bulb region adjacent to the dermal papilla that contains rapidly proliferating matrix cells that give rise to the various cell lineages of the hair shaft and inner root sheath" [MP:0010686] synonym: "germinal matrix of hair bulb" EXACT [FMA:70772] synonym: "lower part of bulb of hair follicle" EXACT [FMA:70772] synonym: "lower zone of bulb of hair follicle" EXACT [FMA:70772] xref: FMA:70772 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0005932 ! bulb of hair follicle [Term] id: UBERON:0006005 name: hair follicle isthmus def: "the middle part of the hair follicle that extends from the sebaceous duct to the bulge" [MP:0010694] synonym: "isthmus of hair follicle" EXACT [FMA:70723] xref: FMA:70723 xref: ncithesaurus:Hair_Follicle_Isthmus is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0002073 ! hair follicle [Term] id: UBERON:0006006 name: metoptic pilar def: "posterior border of the optic nerve foramen." [MP:0010705] is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0005745 ! optic canal [Term] id: UBERON:0006007 name: pre-Botzinger complex def: "the group of interneurons within the medulla oblongata's ventral respiratory group that are important for the generation of ventilatory (inspiratory) rhythmogenesis[MP]. The Pre-Bötzinger Complex (preBötC) is a cluster of interneurons in the ventrolateral medulla of the brainstem, which is essential to the generation of respiratory rhythm in mammals[WP]." [MP:0010745, Wikipedia:Pre-botzinger_complex] comment: the MP class implies this is part of both the medulla oblongata and the PSNS, which violates the spatial disjointness constraint. We weaken this to continuous_with here. synonym: "Pre-Bötzinger Complex" EXACT [Wikipedia:Pre-botzinger_complex] synonym: "preBötC" EXACT [Wikipedia:Pre-botzinger_complex] xref: MA:0002577 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: continuous_with UBERON:0000011 ! parasympathetic nervous system relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0006008 name: fibrous ring of heart def: "The right and left fibrous rings of heart (anulus fibrosus cordis) surround the atrioventricular and arterial orifices, and are stronger upon the left than on the right side of the heart. The right fibrous ring is known as the anulus fibrosus dexter cordis, and the left is known as the anulus fibrosus sinister cordis. The atrioventricular rings serve for the attachment of the muscular fibers of the atria and ventricles, and for the attachment of the bicuspid and tricuspid valves. The left atrioventricular ring is closely connected, by its right margin, with the aortic arterial ring; between these and the right atrioventricular ring is a triangular mass of fibrous tissue, the trigonum fibrosum, which represents the os cordis seen in the heart of some of the larger animals, as the ox and elephant. Lastly, there is the tendinous band, already referred to, the posterior surface of the conus arteriosus. The fibrous rings surrounding the arterial orifices serve for the attachment of the great vessels and semilunar valves, they are known as The aortic annulus. Each ring receives, by its ventricular margin, the attachment of some of the muscular fibers of the ventricles; its opposite margin presents three deep semicircular notches, to which the middle coat of the artery is firmly fixed. The attachment of the artery to its fibrous ring is strengthened by the external coat and serous membrane externally, and by the endocardium internally. From the margins of the semicircular notches the fibrous structure of the ring is continued into the segments of the valves. The middle coat of the artery in this situation is thin, and the vessel is dilated to form the sinuses of the aorta and pulmonary artery." [Wikipedia:Fibrous_rings_of_heart] synonym: "annulus fibrosus cordis" RELATED [Wikipedia:Fibrous_rings_of_heart] synonym: "anulus fibrosus cordis" RELATED [Wikipedia:Fibrous_rings_of_heart] synonym: "anulus fibrosus of heart" EXACT [FMA:9497] synonym: "aortic annulus" RELATED [Wikipedia:Fibrous_rings_of_heart] synonym: "coronary tendon" RELATED [BTO:0003628] synonym: "fibrous ring of heart" RELATED [Wikipedia:Fibrous_rings_of_heart] synonym: "Lower's ring" RELATED [BTO:0003628] xref: BTO:0003628 xref: FMA:9497 is_a: UBERON:0006444 ! implied link automatically realized ! annulus fibrosus relationship: part_of UBERON:0000948 intersection_of: UBERON:0006444 ! annulus fibrosus intersection_of: part_of UBERON:0000948 ! heart [Term] id: UBERON:0006009 name: cusp of cardiac valve def: "Organ component which has as its parts the cusp proper, lunule and nodule of semilunar valvule[FMA]. The cusps of the heart valves serve to seal the heart valves when closed. There are three cusps for each valve except for the mitral valve, which has only two (hence its alternate name, \"bicuspid valve\"). \"Nodules\" are located at the tip of the valve, to form a tighter seal[WP]." [FMA:7232, Wikipedia:Cusps_of_heart_valves] synonym: "cardiac valve cusp" EXACT [FMA:7232] synonym: "cardiac valvular cusp" EXACT [FMA:7232] synonym: "cardiac valvule" EXACT [FMA:7232] synonym: "cardial valve cusp" EXACT [] synonym: "semilunar valvule" EXACT [FMA:7232] xref: FMA:7232 xref: ncithesaurus:Cardiac_Valve_Cusp xref: SCTID:30822008 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0000946 ! cardial valve [Term] id: UBERON:0006010 name: hyaloid canal def: "Hyaloid canal is a small transparent canal running through the vitreous body from the optical nerve disc to the lens; in foetus it contains a prolongation of the central artery of the retina, the hyaloid artery. Other names: Cloquet's canal, Stilling's canal. The function of the canal is to provide an adjustable reservoir of mobile liquid which may be easily and rapidly displaced backwards in positive accommodation, forwards in negative accommodation[WP]. a passage running from in front of the optic disk to the lens of the eye; in the fetus, it transmits the hyaloid artery[TFD]." [http://medical-dictionary.thefreedictionary.com/Hyaloid+canal, Wikipedia:Hyaloid_canal] comment: in FMA, this is_a FMA:67388 portion of vitreous humor synonym: "canal of cloquet" EXACT [FMA:58837] synonym: "cloquet's canal" EXACT [FMA:58837] synonym: "stilling's canal" EXACT [FMA:58837] xref: FMA:58837 xref: SCTID:362506002 is_a: UBERON:0004111 ! anatomical conduit relationship: part_of UBERON:0001798 ! vitreous body [Term] id: UBERON:0006011 name: hyaloid vein def: "Vein internal to the eye." [ZFIN:ZDB-PUB-010205-5] synonym: "hyaloid veins" EXACT PLURAL [ZFA:0005047] xref: XAO:0004156 xref: ZFA:0005047 is_a: UBERON:0001638 ! vein is_a: UBERON:0005492 ! hyaloid vessel [Term] id: UBERON:0006012 name: interdigital region synonym: "interdigit" RELATED [] synonym: "interdigit region" EXACT [] xref: BTO:0004670 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: adjacent_to UBERON:0002544 {cardinality="2"} ! digit relationship: part_of UBERON:0002470 ! autopod [Term] id: UBERON:0006013 name: hand interdigital region synonym: "hand interdigit region" EXACT [MA:0000627] xref: MA:0000627 xref: OG:0000991 is_a: UBERON:0006012 ! implied link automatically realized ! interdigital region relationship: part_of UBERON:0002398 intersection_of: UBERON:0006012 ! interdigital region intersection_of: part_of UBERON:0002398 ! hand relationship: adjacent_to UBERON:0002389 {cardinality="2"} ! hand digit [Term] id: UBERON:0006014 name: foot interdigital region synonym: "foot interdigit region" EXACT [MA:0000651] xref: MA:0000651 xref: OG:0000992 is_a: UBERON:0006012 ! implied link automatically realized ! interdigital region relationship: part_of UBERON:0002387 intersection_of: UBERON:0006012 ! interdigital region intersection_of: part_of UBERON:0002387 ! foot relationship: adjacent_to UBERON:0001466 {cardinality="2"} ! foot digit [Term] id: UBERON:0006015 name: webbed interdigital region def: "Interdigital webbing is the presence of membranes of skin between the digits. Normally in mammals, webbing is present in the embryo but resorbed later in development, but in various mammal species it occasionally persists in adulthood.[1] In humans, it can be found in those suffering from LEOPARD syndrome and from Aarskog-Scott syndrome. Webbing between the digits of the hindfoot is also present in several mammals that spend part of their time in the water.[3] Webbing accommodates movement in the water[WP]." [Wikipedia:Interdigital_webbing] synonym: "interdigital webbing" EXACT [] synonym: "syndactylous interdigital region" EXACT [] synonym: "web" BROAD [] is_a: UBERON:0006012 ! interdigital region relationship: part_of UBERON:0008440 ! webbed autpod [Term] id: UBERON:0006016 name: interdigital region between digits 1 and 2 is_a: UBERON:0006012 ! interdigital region relationship: adjacent_to UBERON:0006048 relationship: adjacent_to UBERON:0006049 intersection_of: UBERON:0006012 ! interdigital region intersection_of: adjacent_to UBERON:0006048 ! digit 1 intersection_of: adjacent_to UBERON:0006049 ! digit 2 relationship: part_of UBERON:0002470 ! autopod [Term] id: UBERON:0006019 name: interdigital region between digits 2 and 3 is_a: UBERON:0006012 ! interdigital region relationship: adjacent_to UBERON:0006049 relationship: adjacent_to UBERON:0006050 intersection_of: UBERON:0006012 ! interdigital region intersection_of: adjacent_to UBERON:0006049 ! digit 2 intersection_of: adjacent_to UBERON:0006050 ! digit 3 relationship: part_of UBERON:0002470 ! autopod [Term] id: UBERON:0006022 name: interdigital region between digits 3 and 4 is_a: UBERON:0006012 ! interdigital region relationship: adjacent_to UBERON:0006050 relationship: adjacent_to UBERON:0006051 intersection_of: UBERON:0006012 ! interdigital region intersection_of: adjacent_to UBERON:0006050 ! digit 3 intersection_of: adjacent_to UBERON:0006051 ! digit 4 relationship: part_of UBERON:0002470 ! autopod [Term] id: UBERON:0006025 name: interdigital region between digits 4 and 5 is_a: UBERON:0006012 ! interdigital region relationship: adjacent_to UBERON:0006051 relationship: adjacent_to UBERON:0006052 intersection_of: UBERON:0006012 ! interdigital region intersection_of: adjacent_to UBERON:0006051 ! digit 4 intersection_of: adjacent_to UBERON:0006052 ! digit 5 relationship: part_of UBERON:0002470 ! autopod [Term] id: UBERON:0006026 name: interdigital region between fingers 1 and 2 xref: EHDAA:6298 xref: EHDAA2:0000844 xref: EMAPA:17445 is_a: UBERON:0006013 ! implied link automatically realized ! hand interdigital region is_a: UBERON:0006016 ! implied link automatically realized ! interdigital region between digits 1 and 2 relationship: adjacent_to UBERON:0001463 relationship: adjacent_to UBERON:0003622 intersection_of: UBERON:0006012 ! interdigital region intersection_of: adjacent_to UBERON:0001463 ! hand digit 1 intersection_of: adjacent_to UBERON:0003622 ! hand digit 2 relationship: part_of UBERON:0002398 ! hand [Term] id: UBERON:0006029 name: interdigital region between fingers 2 and 3 xref: EHDAA:6304 xref: EHDAA2:0000847 xref: EMAPA:17448 is_a: UBERON:0006013 ! implied link automatically realized ! hand interdigital region is_a: UBERON:0006019 ! implied link automatically realized ! interdigital region between digits 2 and 3 relationship: adjacent_to UBERON:0003622 relationship: adjacent_to UBERON:0003623 intersection_of: UBERON:0006012 ! interdigital region intersection_of: adjacent_to UBERON:0003622 ! hand digit 2 intersection_of: adjacent_to UBERON:0003623 ! hand digit 3 relationship: part_of UBERON:0002398 ! hand [Term] id: UBERON:0006032 name: interdigital region between fingers 3 and 4 xref: EHDAA:6310 xref: EHDAA2:0000850 xref: EMAPA:17451 is_a: UBERON:0006013 ! implied link automatically realized ! hand interdigital region is_a: UBERON:0006022 ! implied link automatically realized ! interdigital region between digits 3 and 4 relationship: adjacent_to UBERON:0003623 relationship: adjacent_to UBERON:0003624 intersection_of: UBERON:0006012 ! interdigital region intersection_of: adjacent_to UBERON:0003623 ! hand digit 3 intersection_of: adjacent_to UBERON:0003624 ! hand digit 4 relationship: part_of UBERON:0002398 ! hand [Term] id: UBERON:0006035 name: interdigital region between fingers 4 and 5 xref: EHDAA:6316 xref: EHDAA2:0000853 xref: EMAPA:17454 is_a: UBERON:0006013 ! implied link automatically realized ! hand interdigital region is_a: UBERON:0006025 ! implied link automatically realized ! interdigital region between digits 4 and 5 relationship: adjacent_to UBERON:0003624 relationship: adjacent_to UBERON:0003625 intersection_of: UBERON:0006012 ! interdigital region intersection_of: adjacent_to UBERON:0003624 ! hand digit 4 intersection_of: adjacent_to UBERON:0003625 ! hand digit 5 relationship: part_of UBERON:0002398 ! hand [Term] id: UBERON:0006038 name: interdigital region between toes 1 and 2 xref: EHDAA:6148 xref: EHDAA2:0000856 xref: EMAPA:17476 is_a: UBERON:0006014 ! implied link automatically realized ! foot interdigital region is_a: UBERON:0006016 ! implied link automatically realized ! interdigital region between digits 1 and 2 relationship: adjacent_to UBERON:0003631 relationship: adjacent_to UBERON:0003632 intersection_of: UBERON:0006012 ! interdigital region intersection_of: adjacent_to UBERON:0003631 ! foot digit 1 intersection_of: adjacent_to UBERON:0003632 ! foot digit 2 relationship: part_of UBERON:0002387 ! foot [Term] id: UBERON:0006041 name: interdigital region between toes 2 and 3 xref: EHDAA:6154 xref: EHDAA2:0000859 xref: EMAPA:17479 is_a: UBERON:0006014 ! implied link automatically realized ! foot interdigital region is_a: UBERON:0006019 ! implied link automatically realized ! interdigital region between digits 2 and 3 relationship: adjacent_to UBERON:0003632 relationship: adjacent_to UBERON:0003633 intersection_of: UBERON:0006012 ! interdigital region intersection_of: adjacent_to UBERON:0003632 ! foot digit 2 intersection_of: adjacent_to UBERON:0003633 ! foot digit 3 relationship: part_of UBERON:0002387 ! foot [Term] id: UBERON:0006044 name: interdigital region between toes 3 and 4 xref: EHDAA:6160 xref: EHDAA2:0000862 xref: EMAPA:17482 is_a: UBERON:0006014 ! implied link automatically realized ! foot interdigital region is_a: UBERON:0006022 ! implied link automatically realized ! interdigital region between digits 3 and 4 relationship: adjacent_to UBERON:0003633 relationship: adjacent_to UBERON:0003634 intersection_of: UBERON:0006012 ! interdigital region intersection_of: adjacent_to UBERON:0003633 ! foot digit 3 intersection_of: adjacent_to UBERON:0003634 ! foot digit 4 relationship: part_of UBERON:0002387 ! foot [Term] id: UBERON:0006047 name: interdigital region between toes 4 and 5 xref: EHDAA:6166 xref: EHDAA2:0000865 xref: EMAPA:17485 is_a: UBERON:0006014 ! implied link automatically realized ! foot interdigital region is_a: UBERON:0006025 ! implied link automatically realized ! interdigital region between digits 4 and 5 relationship: adjacent_to UBERON:0003634 relationship: adjacent_to UBERON:0003635 intersection_of: UBERON:0006012 ! interdigital region intersection_of: adjacent_to UBERON:0003634 ! foot digit 4 intersection_of: adjacent_to UBERON:0003635 ! foot digit 5 relationship: part_of UBERON:0002387 ! foot [Term] id: UBERON:0006048 name: digit 1 comment: comment: This class represents all instances of the 1st digit of the in human and mouse, and all homologues of this digit in other vertebrates. See http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553264/ is_a: UBERON:0002544 ! digit [Term] id: UBERON:0006049 name: digit 2 comment: comment: This class represents all instances of the 2nd digit of the in human and mouse, and all homologues of this digit in other vertebrates. See http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553264/ is_a: UBERON:0002544 ! digit [Term] id: UBERON:0006050 name: digit 3 comment: comment: This class represents all instances of the 3rd digit of the in human and mouse, and all homologues of this digit in other vertebrates. See http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553264/ is_a: UBERON:0002544 ! digit [Term] id: UBERON:0006051 name: digit 4 comment: comment: This class represents all instances of the 4th digit of the in human and mouse, and all homologues of this digit in other vertebrates. See http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553264/ is_a: UBERON:0002544 ! digit [Term] id: UBERON:0006052 name: digit 5 comment: comment: This class represents all instances of the 5th digit of the in human and mouse, and all homologues of this digit in other vertebrates. See http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553264/ is_a: UBERON:0002544 ! digit [Term] id: UBERON:0006054 name: surface of occiput def: "The occiput is the anatomical term for the posterior (back) portion of the head." [Wikipedia:Occiput] synonym: "occiput" RELATED [FMA:46479] synonym: "occiput surface" EXACT [FMA:46479] synonym: "regio occipitalis (capitis)" EXACT [FMA:46479] xref: FMA:46479 xref: galen:Occiput is_a: UBERON:0006056 ! posterior surface of head [Term] id: UBERON:0006056 name: posterior surface of head is_a: UBERON:0000015 ! anatomical boundary relationship: part_of UBERON:0000033 ! head [Term] id: UBERON:0006057 name: multi-segment region is_a: UBERON:0000061 ! anatomical structure relationship: has_part UBERON:0000914 ! organismal segment [Term] id: UBERON:0006058 name: multi-limb segment region is_a: UBERON:0006057 ! multi-segment region relationship: has_part UBERON:0002529 ! limb segment [Term] id: UBERON:0006059 name: falx cerebri def: "The falx cerebri, also known as the cerebral falx, so named from its sickle-like form, is a strong, arched fold of dura mater which descends vertically in the longitudinal fissure between the cerebral hemispheres. It is narrow in front, where it is attached to the crista galli of the ethmoid; and broad behind, where it is connected with the upper surface of the tentorium cerebelli. Its upper margin is convex, and attached to the inner surface of the skull in the middle line, as far back as the internal occipital protuberance; it contains the superior sagittal sinus. Its lower margin is free and concave, and contains the inferior sagittal sinus. The falx cerebri is known to calcify with age." [Wikipedia:Falx_cerebri] synonym: "cerebral falx" EXACT [FMA:83967] xref: EMAPA:18551 xref: FMA:83967 xref: ncithesaurus:Falx_Cerebri xref: SCTID:279275004 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0002363 ! dura mater [Term] id: UBERON:0006060 name: conotruncus def: "The distal portion of Bulbus cordis that forms an outflow channel and gives rise to the proximal conus cordis." [UBERON:gg] synonym: "rostral half of bulbus cordis" EXACT [EMAPA:16221] xref: EMAPA:16221 xref: EMAPA:16338 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0004706 ! bulbus cordis [Term] id: UBERON:0006061 name: process of vertebra comment: todo review w.r.t cartilage vs bone synonym: "vertebral process" EXACT [FMA:24530] xref: FMA:24530 is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:0002412 ! vertebra [Term] id: UBERON:0006062 name: articular process of vertebra def: "Paired processes at the cephalic and caudal ends of the neural arch. They function as interlocking structures between adjacent vertebrae, and limit dorsoventral flexion and lateral movement of the column in the trunk region[AAO]. The articular processes or zygapophyses of a vertebra, in human anatomy contain two superior and two inferior, spring from the junctions of the pedicles and laminae. These stick out of an end of a vertebra to lock with a zygapophysis on the next vertebra, to make the backbone more stable. The superior processes project upward from a lower vertebra, and their articular surfaces are directed more or less backward. The inferior processes project downward from a higher vertebra, and their articular surfaces are directed more or less forward and outward. The articular surfaces are coated with hyaline cartilage." [AAO:Pugener_and_Maglia_2008, Wikipedia:Articular_processes] comment: todo - class as endochondral bone, check species subset: vertebrate_core synonym: "articular process" BROAD [Wikipedia:Articular_processes] synonym: "processus articularis (zygapophysis)" EXACT [FMA:11952] synonym: "zygapophysis" EXACT [Wikipedia:Articular_processes] xref: AAO:0000710 xref: FMA:11952 xref: SCTID:317570004 xref: ZFA:0001603 is_a: UBERON:0006061 ! process of vertebra [Term] id: UBERON:0006063 name: cartilaginous neural arch def: "One of the cartilaginous structures surrounding the embryonic spinal cord, formed by the dorsal growth of the dorsolateral arcualia; it is the primordium of the vertebral arch." [BTO:0001763] xref: BTO:0001763 is_a: UBERON:0002050 ! implied link automatically realized ! embryonic structure is_a: UBERON:0004765 ! skeletal element relationship: has_part UBERON:0002418 ! cartilage tissue relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0006065 name: hemal arch def: "Bony canal attached to the ventral surface or the vertebral centrum that encloses and protects the caudal artery and vein ventrally. The arch consists of right and left halves, which are fused ventrally to give a V- or Y-shape to the ventral aspect of the vertebra[AAO]. Hemal arches extend ventrally from the centra of caudal and transitional vertebrae to enclose the caudal artery and vein. In cyprinids, the hemal arch forms directly in membrane bone[ZFA]." [AAO:0000726, Wikipedia:Haemal_arch, ZFIN:curator] comment: TODO - add connection to neural arch subset: organ_slim synonym: "haemal arch" EXACT [AAO:0000726, ZFA:0000519] synonym: "ventral arch" RELATED [AAO:0000726] synonym: "ventral arcocentrum" EXACT [ZFA:0000519] xref: AAO:0000726 xref: ZFA:0000519 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004247 ! implied link automatically realized ! back bone relationship: part_of UBERON:0001095 ! caudal vertebra [Term] id: UBERON:0006067 name: musculature of hindlimb zeugopod synonym: "leg musculature" EXACT [FMA:50211] synonym: "muscle group of leg" EXACT [FMA:50211] synonym: "set of muscles of leg" EXACT [FMA:50211] xref: FMA:50211 is_a: UBERON:0004482 ! implied link automatically realized ! musculature of lower limb relationship: part_of UBERON:0003823 intersection_of: UBERON:0001015 ! musculature intersection_of: part_of UBERON:0003823 ! hindlimb zeugopod [Term] id: UBERON:0006068 name: bone of tail synonym: "tail bone" EXACT [MA:0000696] xref: MA:0000696 is_a: UBERON:0001474 ! implied link automatically realized ! bone relationship: part_of UBERON:0007812 intersection_of: UBERON:0001474 ! bone intersection_of: part_of UBERON:0007812 ! post-anal tail [Term] id: UBERON:0006070 name: coccygeal vertebra comment: todo - check why this is in MA as a separate class synonym: "caudal vertebra" BROAD SENSU [FMA:12527] synonym: "coccygea" RELATED [MA:0001420] synonym: "coccygeal segment" EXACT [] synonym: "fused tail vertebra" EXACT [UBERON:cjm] xref: FMA:12527 xref: galen:CoccygealVertebra xref: MA:0001420 xref: ncithesaurus:Coccygeal_Vertebra xref: OpenCyc:Mx4rv9IEzZwpEbGdrcN5Y29ycA xref: SCTID:361774004 is_a: UBERON:0001095 ! implied link automatically realized ! caudal vertebra relationship: part_of UBERON:0001350 intersection_of: UBERON:0001095 ! caudal vertebra intersection_of: part_of UBERON:0001350 ! coccyx [Term] id: UBERON:0006071 name: caudal region comment: merge with tail? synonym: "postsacral region" RELATED [AAO:0000082] synonym: "tail region" RELATED [AAO:0000082] xref: XAO:0000087 is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0000154 ! posterior region of body [Term] id: UBERON:0006072 name: cervical region of vertebral column def: "That portion of the spine comprising the cervical vertebrae. The neck area of the spine." [Medical_Dictionary:http\://medical-dictionary.thefreedictionary.com/] synonym: "cervical spinal column" EXACT [FMA:24138] synonym: "cervical spine" EXACT [FMA:24138] synonym: "cervical vertebral column" EXACT [FMA:24138] xref: AAO:0000092 xref: BTO:0004148 xref: EHDAA:5051 xref: EHDAA2:0000238 xref: EMAPA:17215 xref: FMA:24138 xref: ncithesaurus:Cervical_Spine xref: SCTID:260488005 is_a: UBERON:0006077 ! implied link automatically realized ! subdivision of vertebral column relationship: part_of UBERON:0005434 intersection_of: UBERON:0006077 ! subdivision of vertebral column intersection_of: part_of UBERON:0005434 ! cervical region relationship: part_of UBERON:0002090 ! postcranial axial skeleton [Term] id: UBERON:0006073 name: thoracic region of vertebral column def: "That part of the spine comprising the thoracic vertebrae." [Medical_Dictionary:http\://medical-dictionary.thefreedictionary.com/] synonym: "columna vertebralis thoracicus" EXACT [FMA:9140] synonym: "thoracic spine" EXACT [FMA:9140] synonym: "thoracic vertebral column" EXACT [FMA:9140] xref: AAO:0000612 xref: BTO:0004150 xref: EHDAA:5063 xref: EHDAA2:0002013 xref: EMAPA:17396 xref: FMA:9140 xref: ncithesaurus:Thoracic_Spine xref: SCTID:243931006 is_a: UBERON:0006077 ! implied link automatically realized ! subdivision of vertebral column relationship: part_of UBERON:0005482 intersection_of: UBERON:0006077 ! subdivision of vertebral column intersection_of: part_of UBERON:0005482 ! thoracic region relationship: part_of UBERON:0002090 ! postcranial axial skeleton [Term] id: UBERON:0006074 name: lumbar region of vertebral column def: "That portion of the spine comprising the lumbar vertebrae." [Medical_Dictionary:http\://medical-dictionary.thefreedictionary.com/] synonym: "lumbar spine" EXACT [BTO:0004147] synonym: "lumbar vertebral column" EXACT [FMA:16203] xref: BTO:0004147 xref: EHDAA:5055 xref: EHDAA2:0001037 xref: EMAPA:17393 xref: FMA:16203 xref: GAID:31 xref: ncithesaurus:Lumbar_Spine xref: SCTID:243932004 is_a: UBERON:0006077 ! implied link automatically realized ! subdivision of vertebral column relationship: part_of UBERON:0005462 intersection_of: UBERON:0006077 ! subdivision of vertebral column intersection_of: part_of UBERON:0005462 ! lower back relationship: part_of UBERON:0002090 ! postcranial axial skeleton [Term] id: UBERON:0006075 name: sacral region of vertebral column xref: AAO:0000724 xref: EHDAA:5059 xref: EHDAA2:0001772 xref: EMAPA:17676 xref: GAID:32 is_a: UBERON:0006077 ! implied link automatically realized ! subdivision of vertebral column relationship: part_of UBERON:0005473 intersection_of: UBERON:0006077 ! subdivision of vertebral column intersection_of: part_of UBERON:0005473 ! sacral region relationship: part_of UBERON:0002090 ! postcranial axial skeleton [Term] id: UBERON:0006076 name: caudal region of vertebral column def: "Region of the vertebral column posterior to the caudal-sacral region, that may consists of two or three to more than 100 vertebrae. These vertebrae exhibit a gradual reduction in the sizes of their transverse processes and zygapophyses, but these structures are never entirely absent. All caudal vertebrae bear haemal arches." [AAO:Duellman_and_Trueb_1994] synonym: "caudal region" RELATED [AAO:0000082] synonym: "postsacral region" RELATED [AAO:0000082] synonym: "tail region" RELATED [AAO:0000082] xref: AAO:0000082 is_a: UBERON:0006077 ! implied link automatically realized ! subdivision of vertebral column relationship: part_of UBERON:0006071 intersection_of: UBERON:0006077 ! subdivision of vertebral column intersection_of: part_of UBERON:0006071 ! caudal region [Term] id: UBERON:0006077 name: subdivision of vertebral column synonym: "vertebral column subdivision" EXACT [FMA:16201] xref: FMA:16201 is_a: UBERON:0000075 ! subdivision of skeletal system is_a: UBERON:0009568 ! implied link automatically realized ! trunk region of vertebral column relationship: part_of UBERON:0001130 ! vertebral column [Term] id: UBERON:0006078 name: subdivision of spinal cord lateral column is_a: UBERON:0006080 ! segment of white matter of spinal cord relationship: part_of UBERON:0005374 ! spinal cord lateral column [Term] id: UBERON:0006079 name: subdivision of spinal cord dorsal column synonym: "segment of dorsal funiculus of spinal cord" RELATED [FMA:258190] xref: FMA:258190 is_a: UBERON:0006080 ! segment of white matter of spinal cord relationship: part_of UBERON:0005373 ! spinal cord dorsal column [Term] id: UBERON:0006080 name: segment of white matter of spinal cord xref: FMA:258174 is_a: UBERON:0002318 ! white matter of spinal cord [Term] id: UBERON:0006081 name: fundus of gallbladder def: "The fundus of gallbladder is the portion of the gallbladder which lies the farthest from the cystic duct. It is covered with peritoneum. A traditional cholecystectomy is most commonly performed from the infundibulum to the fundus. It's at the same level as the transpyloric plane." [Wikipedia:Fundus_of_gallbladder] synonym: "fundus of the gallbladder" RELATED [Wikipedia:Fundus_of_gallbladder] synonym: "gallbladder fundus" RELATED [Wikipedia:Fundus_of_gallbladder] synonym: "gallbladder fundus" EXACT [FMA:14536] xref: FMA:14536 xref: ncithesaurus:Gallbladder_Fundus xref: SCTID:245391004 is_a: UBERON:0000064 ! organ part is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0002110 ! gallbladder [Term] id: UBERON:0006082 name: fundus of urinary bladder def: "The fundus of the urinary bladder is the base of the bladder, formed by the posterior wall. It is lymphatically drained by the external iliac lymph nodes. The peritoneum lies superior to the fundus[WP]." [Wikipedia:Fundus_of_the_urinary_bladder#Fundus] synonym: "base of urinary bladder" EXACT [FMA:15908] synonym: "fundus of bladder" BROAD [FMA:15908] synonym: "fundus vesicae" EXACT [FMA:15908, FMA:TA] synonym: "urinary bladder fundus" EXACT [FMA:15908] synonym: "urinary bladder fundus region" EXACT [MA:0001694] xref: EHDAA:9330 xref: EHDAA2:0000582 xref: EMAPA:18322 xref: FMA:15908 xref: MA:0001694 xref: ncithesaurus:Bladder_Fundus xref: OG:0001184 xref: SCTID:362226002 is_a: UBERON:0000064 ! organ part is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0001255 ! urinary bladder [Term] id: UBERON:0006083 name: Perirhinal cortex synonym: "Perirhinal area" EXACT [NIF_GrossAnatomy:nlx_anat_1005006] synonym: "perirhinal cortex" EXACT [NIF_GrossAnatomy:nlx_anat_1005006] xref: ABA:PERI xref: BM:Tel-Cx-PRh xref: BTO:0004355 xref: EFO:0001978 xref: MA:0000912 xref: NIF_GrossAnatomy:nlx_anat_1005006 is_a: UBERON:0002791 ! regional part of telencephalon relationship: part_of UBERON:0002022 ! insula [Term] id: UBERON:0006086 name: stria medullaris def: "." [NIF_GrossAnatomy:birnlex_1066] synonym: "stria habenularis" EXACT [NIF_GrossAnatomy:birnlex_1066] synonym: "stria medullaris (wenzel - wenzel)" EXACT [NIF_GrossAnatomy:birnlex_1066] synonym: "stria medullaris of thalamus" EXACT [FMA:62080, NIF_GrossAnatomy:birnlex_1066] synonym: "stria medullaris thalami" EXACT PLURAL [NIF_GrossAnatomy:birnlex_1066] synonym: "stria medullaris thalamica" EXACT [NIF_GrossAnatomy:birnlex_1066] xref: BM:Die-SM xref: FMA:62080 xref: NIF_GrossAnatomy:birnlex_1066 xref: SCTID:362368004 is_a: UBERON:0002757 ! regional part of epithalamus [Term] id: UBERON:0006087 name: internal arcuate fiber bundle synonym: "arcuate fibers medial lemniscus" EXACT [NIF_GrossAnatomy:birnlex_1091] synonym: "fibrae arcuatae internae" EXACT [FMA:72629, FMA:TA] synonym: "internal arcuate fibers" EXACT [NIF_GrossAnatomy:birnlex_1091] synonym: "internal arcuate fibers" EXACT [FMA:72629] synonym: "internal arcuate fibres" EXACT [FMA:72629] synonym: "internal arcuate tract" EXACT [FMA:72629] xref: FMA:72629 xref: NIF_GrossAnatomy:birnlex_1091 is_a: UBERON:0000122 ! neuron projection bundle relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0006088 name: inferior parietal cortex def: "Component of the parietal lobe. The inferior parietal cortex label includes the inferior parietal gyrus and the angular gyrus and lies inferior to the superior parietal gyrus. The rostral and caudal boundaries were the supramarginal gyrus and the parieto-occipital incisure respectively. The medial and lateral boundaries were the superior parietal gyrus and the middle temporal gyrus respectively (Christine Fennema-Notestine)." [NIF_GrossAnatomy:birnlex_1194] synonym: "inferior parietal cortex" EXACT [NIF_GrossAnatomy:birnlex_1194] synonym: "inferior parietal lobule" EXACT [NIF_GrossAnatomy:birnlex_1194] synonym: "inferior parietal lobule" EXACT [FMA:77536] xref: EFO:0001951 xref: FMA:77536 xref: NIF_GrossAnatomy:birnlex_1194 xref: SCTID:362336007 is_a: UBERON:0002791 ! regional part of telencephalon is_a: UBERON:0003022 ! lobe parts of cerebral cortex [Term] id: UBERON:0006089 name: dorsal external arcuate fiber bundle synonym: "dorsal external arcuate fiber bundle" EXACT [NIF_GrossAnatomy:birnlex_1250] synonym: "dorsal external arcuate fibers" EXACT [NIF_GrossAnatomy:birnlex_1250] synonym: "dorsal external arcuate fibers" EXACT [FMA:72630] synonym: "dorsal external arcuate tract" EXACT [FMA:72630] synonym: "dorsal superficial arcuate fibers" EXACT [NIF_GrossAnatomy:birnlex_1250] synonym: "dorsal superficial arcuate fibers" EXACT [FMA:72630] synonym: "external arcuate fibers" EXACT [NIF_GrossAnatomy:birnlex_1250] xref: FMA:72630 xref: NIF_GrossAnatomy:birnlex_1250 is_a: UBERON:0000122 ! neuron projection bundle relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0006090 name: glossopharyngeal nerve fiber bundle synonym: "central part of glossopharyngeal nerve" EXACT [NIF_GrossAnatomy:birnlex_1274] synonym: "central part of glossopharyngeal nerve" EXACT [FMA:72627] synonym: "glossopharyngeal nerve fiber bundle" EXACT [NIF_GrossAnatomy:birnlex_1274] synonym: "glossopharyngeal nerve fibers" EXACT [NIF_GrossAnatomy:birnlex_1274] synonym: "glossopharyngeal nerve fibers" EXACT [FMA:72627] synonym: "glossopharyngeal nerve tract" EXACT [FMA:72627] synonym: "ninth cranial nerve fibers" EXACT [NIF_GrossAnatomy:birnlex_1274] synonym: "ninth cranial nerve fibers" EXACT [FMA:72627] xref: FMA:72627 xref: NIF_GrossAnatomy:birnlex_1274 is_a: UBERON:0002678 ! regional part of medulla oblongata relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0006091 name: inferior horn of the lateral ventricle def: "The part of the lateral ventricle extending downward and anteriorly in the temporal lobe." [NIF_GrossAnatomy:birnlex_1292] synonym: "cornu inferius ventriculi lateralis" EXACT [FMA:83701, FMA:TA] synonym: "inferior horn of lateral ventricle" EXACT [FMA:83701] synonym: "inferior horn of the lateral ventricle" EXACT [NIF_GrossAnatomy:birnlex_1292] synonym: "temporal horn of lateral ventricle" EXACT [NIF_GrossAnatomy:birnlex_1292] xref: FMA:83701 xref: NIF_GrossAnatomy:birnlex_1292 xref: SCTID:362315005 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0002285 ! lateral ventricle [Term] id: UBERON:0006092 name: cuneus cortex def: "Component of the occipital lobe. The rostral boundary was the first coronal slice above the calcarine sulcus where the cuneus cortex becomes visible whereas the caudal boundary was the last slice where the calcarine sulcus was visualized. The medial boundary was the most medial portion of the occipital and parietal cortices. The superio-lateral boundary was the parieto-occipital fissure whereas the inferolateral boundary was the pericalcarine cortex (Christine Fennema-Notestine)." [NIF_GrossAnatomy:birnlex_1396] synonym: "cuneate lobule" EXACT [NIF_GrossAnatomy:birnlex_1396] synonym: "cuneate lobule" EXACT [FMA:61903] synonym: "cuneus" EXACT [NIF_GrossAnatomy:birnlex_1396] synonym: "cuneus cortex" EXACT [NIF_GrossAnatomy:birnlex_1396] synonym: "cuneus gyrus" EXACT [NIF_GrossAnatomy:birnlex_1396] synonym: "cuneus gyrus" EXACT [FMA:61903] synonym: "cuneus of hemisphere" EXACT [NIF_GrossAnatomy:birnlex_1396] synonym: "cuneus of hemisphere" EXACT [FMA:61903] xref: FMA:61903 xref: NIF_GrossAnatomy:birnlex_1396 xref: SCTID:279199007 is_a: UBERON:0002791 ! regional part of telencephalon is_a: UBERON:0003022 ! lobe parts of cerebral cortex relationship: part_of UBERON:0001950 ! neocortex relationship: part_of UBERON:0002021 ! occipital lobe [Term] id: UBERON:0006093 name: precuneus cortex def: "Component of the pareital lobe. The rostral boundary was the posterior extent of the paracentral lobule whereas the caudal boundary was the lingual gyrus. The medial and lateral boundaries were the parieto-occipital fissure and the superior parietal gyrus respectively (Christine Fennema-Notestine)." [NIF_GrossAnatomy:birnlex_1446] synonym: "precuneate lobule" EXACT [NIF_GrossAnatomy:birnlex_1446] synonym: "precuneate lobule" EXACT [FMA:61900] synonym: "precuneus" EXACT [NIF_GrossAnatomy:birnlex_1446] synonym: "precuneus cortex" EXACT [NIF_GrossAnatomy:birnlex_1446] synonym: "quadrate lobule" EXACT [NIF_GrossAnatomy:birnlex_1446] synonym: "quadrate lobule" EXACT [FMA:61900] xref: FMA:61900 xref: NIF_GrossAnatomy:birnlex_1446 xref: SCTID:279200005 is_a: UBERON:0002791 ! regional part of telencephalon is_a: UBERON:0003022 ! lobe parts of cerebral cortex relationship: part_of UBERON:0001872 ! parietal lobe relationship: part_of UBERON:0001950 ! neocortex [Term] id: UBERON:0006094 name: superior parietal cortex def: "Copmonent of the parietal lobe. The rostral and caudal boundaries of the superior parietal cortex were the precentral gyrus and lateral occipital cortex respectively. The medial and lateral boundaries were the precuneus and/or cuneus cortex and the infererior parietal cortex respectively (Christine Fennema-Notestine)." [NIF_GrossAnatomy:birnlex_1450] synonym: "superior parietal cortex" EXACT [NIF_GrossAnatomy:birnlex_1450] synonym: "superior parietal gyrus" EXACT [NIF_GrossAnatomy:birnlex_1450] synonym: "superior parietal gyrus" EXACT [FMA:61899] synonym: "superior parietal lobule" EXACT [NIF_GrossAnatomy:birnlex_1450] synonym: "superior portion of parietal gyrus" EXACT [NIF_GrossAnatomy:birnlex_1450] synonym: "superior portion of parietal gyrus" EXACT [FMA:61899] xref: FMA:61899 xref: NIF_GrossAnatomy:birnlex_1450 xref: SCTID:279168006 is_a: UBERON:0002791 ! regional part of telencephalon is_a: UBERON:0003022 ! lobe parts of cerebral cortex relationship: part_of UBERON:0001872 ! parietal lobe relationship: part_of UBERON:0001950 ! neocortex [Term] id: UBERON:0006095 name: anterior transverse termporal area 41 synonym: "anterior transverse temporal area 41" EXACT [FMA:68638] synonym: "anterior transverse termporal area 41" EXACT [NIF_GrossAnatomy:birnlex_1582] synonym: "area 41 of Brodmann" EXACT [NIF_GrossAnatomy:birnlex_1582] synonym: "area 41 of Brodmann" EXACT [FMA:68638] synonym: "brodmann area 41" EXACT [FMA:68638] synonym: "Brodmann's area 41" EXACT [NIF_GrossAnatomy:birnlex_1582] synonym: "principle auditory receptive areas" EXACT [NIF_GrossAnatomy:birnlex_1582] xref: FMA:68638 xref: NIF_GrossAnatomy:birnlex_1582 is_a: UBERON:0002619 ! regional part of cerebral cortex is_a: UBERON:0003022 ! lobe parts of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0006096 name: posterior transverse termporal area 42 synonym: "area 42 of Brodmann" EXACT [NIF_GrossAnatomy:birnlex_1589] synonym: "area 42 of Brodmann" EXACT [FMA:68639] synonym: "auditory association area" EXACT [NIF_GrossAnatomy:birnlex_1589] synonym: "brodmann area 42" EXACT [FMA:68639] synonym: "Brodmann's area 42" EXACT [NIF_GrossAnatomy:birnlex_1589] synonym: "posterior transverse temporal area 42" EXACT [FMA:68639] synonym: "posterior transverse termporal area 42" EXACT [NIF_GrossAnatomy:birnlex_1589] xref: FMA:68639 xref: NIF_GrossAnatomy:birnlex_1589 is_a: UBERON:0000064 ! organ part is_a: UBERON:0002619 ! regional part of cerebral cortex is_a: UBERON:0003022 ! lobe parts of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0006097 name: ventral external arcuate fiber bundle synonym: "ventral external arcuate fiber bundle" EXACT [NIF_GrossAnatomy:birnlex_1628] synonym: "ventral external arcuate fibers" EXACT [NIF_GrossAnatomy:birnlex_1628] synonym: "ventral external arcuate fibers" EXACT [FMA:72631] synonym: "ventral external arcuate tract" EXACT [FMA:72631] xref: FMA:72631 xref: NIF_GrossAnatomy:birnlex_1628 is_a: UBERON:0000122 ! neuron projection bundle is_a: UBERON:0002678 ! regional part of medulla oblongata relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0006098 name: basal nuclear complex def: "The deep nuclei found in the basal forebrain." [NIF_GrossAnatomy:birnlex_1629] synonym: "Basal ganglia" EXACT [NIF_GrossAnatomy:birnlex_1629] synonym: "basal ganglia" EXACT [FMA:84013] synonym: "basal ganglia set" EXACT [FMA:84013] synonym: "basal nuclear complex" EXACT [NIF_GrossAnatomy:birnlex_1629] synonym: "basal nuclei" EXACT [NIF_GrossAnatomy:birnlex_1629] synonym: "basal nuclei of the forebrain" EXACT [NIF_GrossAnatomy:birnlex_1629] xref: BM:Tel-BG xref: EV:0100182 xref: FMA:84013 xref: MESH:A.08.186.211.730.885.105 xref: NIF_GrossAnatomy:birnlex_1629 is_a: UBERON:0002780 ! regional part of forebrain relationship: part_of UBERON:0000454 ! cerebral subcortex [Term] id: UBERON:0006099 name: Brodmann (1909) area 1 def: "." [NIF_GrossAnatomy:birnlex_1732] synonym: "area 1 of Brodmann" EXACT [FMA:68597] synonym: "area 1 of Brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1732] synonym: "Area postcentralis intermedia" EXACT [NIF_GrossAnatomy:birnlex_1732] synonym: "B09-1" EXACT [NIF_GrossAnatomy:birnlex_1732] synonym: "Brodmann (1909) area 1" EXACT [NIF_GrossAnatomy:birnlex_1732] synonym: "Brodmann area 1" EXACT [NIF_GrossAnatomy:birnlex_1732] synonym: "Brodmann's area 1" EXACT [FMA:68597] synonym: "intermediate postcentral" EXACT [NIF_GrossAnatomy:birnlex_1732] synonym: "intermediate postcentral area" EXACT [FMA:68597] xref: FMA:68597 xref: NIF_GrossAnatomy:birnlex_1732 is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0006100 name: Brodmann (1909) area 3 def: "." [NIF_GrossAnatomy:birnlex_1734] synonym: "area 3 of Brodmann" EXACT [FMA:68599] synonym: "area 3 of Brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1734] synonym: "Area postcentralis oralis" EXACT [NIF_GrossAnatomy:birnlex_1734] synonym: "B09-3" EXACT [NIF_GrossAnatomy:birnlex_1734] synonym: "Brodmann (1909) area 3" EXACT [NIF_GrossAnatomy:birnlex_1734] synonym: "Brodmann area 3" EXACT [NIF_GrossAnatomy:birnlex_1734] synonym: "Brodmann's area 3" EXACT [FMA:68599] synonym: "rostral postcentral" EXACT [NIF_GrossAnatomy:birnlex_1734] synonym: "rostral postcentral area" EXACT [FMA:68599] xref: FMA:68599 xref: NIF_GrossAnatomy:birnlex_1734 is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0006101 name: Brodmann (1909) area 24 def: "." [NIF_GrossAnatomy:birnlex_1755] synonym: "area 24 of Brodmann" EXACT [FMA:68621] synonym: "area 24 of Brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1755] synonym: "Area cingularis anterior ventralis" EXACT [NIF_GrossAnatomy:birnlex_1755] synonym: "B09-24" EXACT [NIF_GrossAnatomy:birnlex_1755] synonym: "Brodmann (1909) area 24" EXACT [NIF_GrossAnatomy:birnlex_1755] synonym: "Brodmann area 24" EXACT [NIF_GrossAnatomy:birnlex_1755] synonym: "ventral anterior cingulate" EXACT [NIF_GrossAnatomy:birnlex_1755] xref: FMA:68621 xref: NIF_GrossAnatomy:birnlex_1755 is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0006102 name: Brodmann (1909) area 35 synonym: "area 35 of Brodmann" EXACT [FMA:68632] synonym: "area 35 of Brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1768] synonym: "Area perirhinalis" EXACT [NIF_GrossAnatomy:birnlex_1768] synonym: "B09-35" EXACT [NIF_GrossAnatomy:birnlex_1768] synonym: "Brodmann (1909) area 35" EXACT [NIF_GrossAnatomy:birnlex_1768] synonym: "Brodmann Area 35" EXACT [NIF_GrossAnatomy:birnlex_1768] synonym: "Brodmann area 35, perirhinal" EXACT [NIF_GrossAnatomy:birnlex_1768] synonym: "Brodmann's area 35" EXACT [FMA:68632] synonym: "Brodmann.35" EXACT [NIF_GrossAnatomy:birnlex_1768] synonym: "perirhinal area 35" EXACT [FMA:68632] xref: BTO:0004356 xref: FMA:68632 xref: NIF_GrossAnatomy:birnlex_1768 xref: SCTID:384790006 is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0006104 name: Brodmann (1909) area 36 synonym: "area 36 of Brodmann" EXACT [FMA:68633] synonym: "area 36 of Brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1769] synonym: "Area ectorhinalis" EXACT [NIF_GrossAnatomy:birnlex_1769] synonym: "B09-36" EXACT [NIF_GrossAnatomy:birnlex_1769] synonym: "Brodmann (1909) area 36" EXACT [NIF_GrossAnatomy:birnlex_1769] synonym: "Brodmann area 36" EXACT [NIF_GrossAnatomy:birnlex_1769] synonym: "Brodmann.36" EXACT [NIF_GrossAnatomy:birnlex_1769] synonym: "ectorhinal" EXACT [NIF_GrossAnatomy:birnlex_1769] synonym: "ectorhinal area 36" EXACT [FMA:68633] xref: BTO:0004357 xref: FMA:68633 xref: NIF_GrossAnatomy:birnlex_1769 is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0006105 name: basis modioli synonym: "basis modioli cochleae" EXACT [FMA:75640, FMA:TA] xref: FMA:75640 xref: NIF_GrossAnatomy:birnlex_2522 is_obsolete: true [Term] id: UBERON:0006106 name: cochlear canal synonym: "cochlear canal" EXACT [NIF_GrossAnatomy:birnlex_2553] synonym: "spiral canal of cochlea" EXACT [NIF_GrossAnatomy:birnlex_2553] synonym: "wall of cochlea" EXACT [FMA:75371] xref: FMA:75371 xref: NIF_GrossAnatomy:birnlex_2553 xref: SCTID:279779009 is_a: UBERON:0002558 ! organ cavity relationship: part_of UBERON:0001844 ! cochlea [Term] id: UBERON:0006107 name: basolateral amygdaloid nuclear complex synonym: "amygdalar basolateral nucleus" EXACT [NIF_GrossAnatomy:birnlex_2679] synonym: "amygdaloid basolateral complex" EXACT [NIF_GrossAnatomy:birnlex_2679] synonym: "amygdaloid basolateral complex" EXACT [FMA:84016] synonym: "basolateral amygdaloid nuclear complex" EXACT [NIF_GrossAnatomy:birnlex_2679] synonym: "Basolateral nuclear complex" EXACT [NIF_GrossAnatomy:birnlex_2679] synonym: "basolateral nuclear group" EXACT [NIF_GrossAnatomy:birnlex_2679] synonym: "basolateral nuclear group" EXACT [FMA:84016] synonym: "basolateral nuclei of amygdala" EXACT [FMA:84016] synonym: "BL" EXACT [NIF_GrossAnatomy:birnlex_2679] synonym: "pars basolateralis (Corpus amygdaloideum)" EXACT [NIF_GrossAnatomy:birnlex_2679] synonym: "vicarious cortex" EXACT [NIF_GrossAnatomy:birnlex_2679] synonym: "vicarious cortex" EXACT [FMA:84016] xref: FMA:84016 xref: NIF_GrossAnatomy:birnlex_2679 is_a: UBERON:0000465 ! material anatomical entity is_a: UBERON:0002791 ! regional part of telencephalon relationship: spatially_disjoint_from UBERON:0002023 {source="ABA"} ! claustrum [Term] id: UBERON:0006108 name: corticomedial nuclear complex synonym: "amygdalar corticomedial nucleus" EXACT [NIF_GrossAnatomy:birnlex_2680] synonym: "CMA" EXACT [NIF_GrossAnatomy:birnlex_2680] synonym: "corticomedial nuclear complex" EXACT [NIF_GrossAnatomy:birnlex_2680] synonym: "corticomedial nuclear group" EXACT [NIF_GrossAnatomy:birnlex_2680] synonym: "corticomedial nuclear group" EXACT [FMA:84015] synonym: "corticomedial nuclei of amygdala" EXACT [FMA:84015] synonym: "pars corticomedialis (Corpus amygdaloideum)" EXACT [NIF_GrossAnatomy:birnlex_2680] xref: FMA:84015 xref: NIF_GrossAnatomy:birnlex_2680 is_a: UBERON:0000465 ! material anatomical entity is_a: UBERON:0002791 ! regional part of telencephalon [Term] id: UBERON:0006114 name: lateral occipital cortex def: "Component of the occipital lobe. The rostral and caudal boundaries of the lateral occipital cortex were the superior parietal gyrus and as the last visible portion of occipital cortex respectively. The medial and lateral boundaries were the cuneus/pericalcarine cortex and the inferior temporal/inferior parietal gyri respectively (Christine Fennema-Notestine)." [NIF_GrossAnatomy:birnlex_735] synonym: "gyrus occipitalis medius (mai)" EXACT [FMA:61902] synonym: "gyrus occipitalis secundus" EXACT [FMA:61902] synonym: "lateral occipital cortex" EXACT [NIF_GrossAnatomy:birnlex_735] synonym: "lateral occipital gyrus" EXACT [NIF_GrossAnatomy:birnlex_735] xref: FMA:61902 xref: NIF_GrossAnatomy:birnlex_735 xref: SCTID:369218006 is_a: UBERON:0003022 ! lobe parts of cerebral cortex relationship: part_of UBERON:0001950 ! neocortex relationship: part_of UBERON:0002021 ! occipital lobe [Term] id: UBERON:0006115 name: posterior column of fornix synonym: "crus fornicis" EXACT [FMA:61969, FMA:TA] synonym: "crus of fornix" EXACT [NIF_GrossAnatomy:birnlex_754] synonym: "crus of fornix" EXACT [FMA:61969] synonym: "posterior column of fornix" EXACT [NIF_GrossAnatomy:birnlex_754] synonym: "posterior column of fornix of forebrain" EXACT [FMA:61969] synonym: "posterior crus of fornix" EXACT [NIF_GrossAnatomy:birnlex_754] synonym: "posterior crus of fornix" EXACT [FMA:61969] synonym: "posterior pillar of fornix" EXACT [NIF_GrossAnatomy:birnlex_754] synonym: "posterior pillar of fornix" EXACT [FMA:61969] xref: FMA:61969 xref: NIF_GrossAnatomy:birnlex_754 xref: SCTID:369116002 is_a: UBERON:0000122 ! neuron projection bundle is_a: UBERON:0002780 ! regional part of forebrain [Term] id: UBERON:0006116 name: vagal nerve fiber bundle synonym: "central part of vagus nerve" EXACT [NIF_GrossAnatomy:birnlex_765] synonym: "central part of vagus nerve" EXACT [FMA:72628] synonym: "tenth cranial nerve fibers" EXACT [NIF_GrossAnatomy:birnlex_765] synonym: "tenth cranial nerve fibers" EXACT [FMA:72628] synonym: "vagal nerve fiber bundle" EXACT [NIF_GrossAnatomy:birnlex_765] synonym: "vagal nerve fibers" EXACT [NIF_GrossAnatomy:birnlex_765] synonym: "vagal nerve fibers" EXACT [FMA:72628] synonym: "vagal nerve tract" EXACT [FMA:72628] xref: FMA:72628 xref: NIF_GrossAnatomy:birnlex_765 is_a: UBERON:0000122 ! neuron projection bundle relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0006117 name: accessory nerve fiber bundle synonym: "accessory nerve fiber bundle" EXACT [NIF_GrossAnatomy:birnlex_916] synonym: "accessory nerve fibers" EXACT [NIF_GrossAnatomy:birnlex_916] synonym: "accessory nerve fibers" EXACT [FMA:72626] synonym: "accessory nerve tract" EXACT [FMA:72626] synonym: "eleventh cranial nerve fibers" EXACT [FMA:72626] xref: FMA:72626 xref: NIF_GrossAnatomy:birnlex_916 is_a: UBERON:0000122 ! neuron projection bundle relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0006118 name: lamina I of gray matter of spinal cord synonym: "lamina i of gray matter of spinal cord" EXACT [NIF_GrossAnatomy:nlx_anat_100203] synonym: "Lamina marginalis" EXACT [NIF_GrossAnatomy:nlx_anat_100203] synonym: "lamina marginalis" EXACT [FMA:68862] synonym: "lamina spinalis i" EXACT [FMA:68862, FMA:TA] synonym: "Layer of Waldeyer" EXACT [NIF_GrossAnatomy:nlx_anat_100203] synonym: "layer of waldeyer" EXACT [FMA:68862] synonym: "Rexed lamina I" EXACT [NIF_GrossAnatomy:nlx_anat_100203] synonym: "rexed lamina i" EXACT [FMA:68862] synonym: "Rexed layer 1" EXACT [NIF_GrossAnatomy:nlx_anat_100203] synonym: "Spinal lamina I" EXACT [NIF_GrossAnatomy:nlx_anat_100203] synonym: "spinal lamina i" EXACT [FMA:68862] xref: FMA:68862 xref: NIF_GrossAnatomy:nlx_anat_100203 is_a: UBERON:0001948 ! regional part of spinal cord relationship: part_of UBERON:0002256 ! dorsal horn of spinal cord [Term] id: UBERON:0006119 name: subbrachial nucleus synonym: "subbrachial nucleus" EXACT [NIF_GrossAnatomy:nlx_anat_1005003] synonym: "tegmental area of tsai" EXACT [FMA:77494] xref: FMA:77494 xref: NIF_GrossAnatomy:nlx_anat_1005003 is_a: UBERON:0002950 ! regional part of midbrain [Term] id: UBERON:0006120 name: superior colliculus superficial gray layer synonym: "lamina colliculi superioris ii" EXACT [FMA:72407, FMA:TA] synonym: "lamina II of superior colliculus" EXACT [Wikipedia:Superior_colliculus#Neural_circuit] synonym: "layer II of superior colliculus" EXACT [FMA:72407] synonym: "outer gray layer of superior colliculus" EXACT [FMA:72407] synonym: "stratum griseum superficiale colliculi superioris" EXACT [FMA:72407, FMA:TA] synonym: "stratum griseum superficiale of superior colliculus" EXACT [Wikipedia:Superior_colliculus#Neural_circuit] synonym: "superficial gray layer of superior colliculus" EXACT [FMA:72407] synonym: "superficial grey layer of superior colliculus" EXACT [FMA:72407] synonym: "superior colliculus superficial gray layer" EXACT [NIF_GrossAnatomy:nlx_anat_1005034] xref: ABA:SCsg xref: FMA:72407 xref: NIF_GrossAnatomy:nlx_anat_1005034 is_a: UBERON:0006785 ! gray matter layer of superior colliculus is_a: UBERON:0006791 ! superficial layer of superior colliculus relationship: spatially_disjoint_from UBERON:0006779 {source="ABA"} ! superficial white layer of superior colliculus relationship: spatially_disjoint_from UBERON:0006780 {source="ABA"} ! zonal layer of superior colliculus [Term] id: UBERON:0006121 name: hemispheric lobule VIII synonym: "Biventer 1 (HVIII)" EXACT [NIF_GrossAnatomy:nlx_anat_20081211] synonym: "biventer lobule" EXACT [FMA:72526] synonym: "Biventral Lobule" EXACT [NIF_GrossAnatomy:nlx_anat_20081211] synonym: "biventral lobule" EXACT [FMA:72526] synonym: "biventral lobule [h viii]" EXACT [FMA:72526] synonym: "cuneiform lobe" EXACT [FMA:72526] synonym: "dorsal parafloccularis [h viii b]" EXACT [FMA:72526] synonym: "dorsal paraflocculus" EXACT [FMA:72526] synonym: "hemispheric lobule viii" EXACT [NIF_GrossAnatomy:nlx_anat_20081211] synonym: "Lobulus Biventer" EXACT [NIF_GrossAnatomy:nlx_anat_20081211] synonym: "lobulus biventer [h viii]" EXACT [FMA:72526, FMA:TA] synonym: "lobulus parafloccularis dorsalis [h viii b]" EXACT [FMA:72526, FMA:TA] synonym: "Paraflocculus Dorsalis" EXACT [NIF_GrossAnatomy:nlx_anat_20081211] xref: FMA:72526 xref: NIF_GrossAnatomy:nlx_anat_20081211 is_a: UBERON:0004003 ! cerebellum hemisphere lobule [Term] id: UBERON:0006122 name: retrorubral area synonym: "A8" EXACT [NIF_GrossAnatomy:nlx_anat_20090301] synonym: "a8" EXACT [FMA:66581] synonym: "anterior basal segmental arterial trunk" EXACT [FMA:66581] synonym: "retrorubral area" EXACT [NIF_GrossAnatomy:nlx_anat_20090301] synonym: "trunk of anterior basal segmental artery" EXACT [FMA:66581] xref: FMA:66581 xref: NIF_GrossAnatomy:nlx_anat_20090301 is_a: UBERON:0002950 ! regional part of midbrain [Term] id: UBERON:0006123 name: horizontal limb of the diagonal band synonym: "Diagonal band horizontal limb" EXACT [NIF_GrossAnatomy:nlx_anat_20090303] synonym: "hDBB" EXACT [NIF_GrossAnatomy:nlx_anat_20090303] synonym: "horizontal limb of diagonal band" EXACT [FMA:77611] synonym: "horizontal limb of the diagonal band" EXACT [NIF_GrossAnatomy:nlx_anat_20090303] synonym: "Horizontal limb of the diagonal band of Broca" EXACT [NIF_GrossAnatomy:nlx_anat_20090303] xref: FMA:77611 xref: NIF_GrossAnatomy:nlx_anat_20090303 is_a: UBERON:0006125 ! subdivision of diagonal band [Term] id: UBERON:0006124 name: vertical limb of the diagonal band synonym: "vertical limb of diagonal band" EXACT [FMA:77612] synonym: "vertical limb of the diagonal band" EXACT [NIF_GrossAnatomy:nlx_anat_20090304] synonym: "Vertical limb of the diagonal band of Broca" EXACT [NIF_GrossAnatomy:nlx_anat_20090304] xref: FMA:77612 xref: NIF_GrossAnatomy:nlx_anat_20090304 is_a: UBERON:0006125 ! subdivision of diagonal band [Term] id: UBERON:0006125 name: subdivision of diagonal band synonym: "diagonal band subdivision" EXACT [FMA:77610] synonym: "regional part of diagonal band" EXACT [NIF_GrossAnatomy:nlx_anat_20090302] xref: FMA:77610 xref: NIF_GrossAnatomy:nlx_anat_20090302 is_a: UBERON:0002791 ! regional part of telencephalon [Term] id: UBERON:0006127 name: funiculus of spinal cord synonym: "spinal cord funiculus" EXACT [FMA:77460] synonym: "white column of spinal cord" EXACT [FMA:77460] xref: FMA:77460 is_a: UBERON:0006080 ! segment of white matter of spinal cord is_a: UBERON:0006133 ! funiculus of neuraxis relationship: part_of UBERON:0002240 ! spinal cord [Term] id: UBERON:0006133 name: funiculus of neuraxis def: "The cerebrospinal nerves consist of numerous nerve fibers collected together and enclosed in membranous sheaths. A small bundle of fibers, enclosed in a tubular sheath, is called a funiculus; if the nerve is of small size, it may consist only of a single funiculus; but if large, the funiculi are collected together into larger bundles or fasciculi, which are bound together in a common membranous investment. Examples include: Anterior funiculus of the spinal cord Lateral funiculus of the spinal cord Posterior funiculus of the spinal cord Funiculus solitarius of the medulla Funiculus separans" [Wikipedia:Funiculus_%28neurology%29] xref: FMA:76738 is_a: UBERON:0000122 ! neuron projection bundle [Term] id: UBERON:0006134 name: nerve fiber def: "A threadlike extension of a nerve cell and consists of an axon and myelin sheath (if existence) in the nervous system. There are nerve fibers in the central nervous system and peripheral nervous system. A nerve fiber may be myelinated and/or unmyelinated. In the central nervous system (CNS), myelin by oligodendroglia cells is formed. Schwann cells form myelin in the peripheral nervous system (PNS). Schwann cells also make a thin covering in an axon without myelin (in the PNS). A peripheral nerve fiber contains an axon, myelin sheath, schwann cells and its endoneurium. There are no endoneurium and schwann cells in the central nervous system" [Wikipedia:Nerve_fiber] synonym: "nerve fibre" EXACT [FMA:5914] synonym: "neurofibra" EXACT [FMA:5914, FMA:TA] synonym: "neurofibrum" EXACT [FMA:5914] xref: FMA:5914 xref: MESH:A.08.663.542 xref: SCTID:88545005 is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system is_a: UBERON:0000470 ! cell part relationship: part_of UBERON:0001019 ! fascicle [Term] id: UBERON:0006135 name: myelinated nerve fiber comment: consider adding link to UBERON:0002316 xref: FMA:5915 xref: GAID:745 xref: MESH:A.08.663.542.512 xref: ncithesaurus:Myelinated_Nerve_Fiber xref: SCTID:362296008 is_a: UBERON:0006134 ! nerve fiber [Term] id: UBERON:0006136 name: unmyelinated nerve fiber synonym: "non-myelinated nerve fiber" EXACT [FMA:5916] xref: FMA:5916 xref: GAID:767 xref: MESH:A.08.663.542.756 xref: ncithesaurus:Unmyelinated_Nerve_Fiber xref: SCTID:46920005 is_a: UBERON:0006134 ! nerve fiber [Term] id: UBERON:0006137 name: proper palmar digital artery def: "The proper palmar digital arteries travel along the sides of the phalanges (along the contiguous sides of the index, middle, ring, and little fingers), each artery lying just below its corresponding digital nerve. Alternative names for these arteries are: proper volar digital arteries, collateral digital arteries, arteriae digitales palmares propriae, or aa. digitales volares propriae. They anastomose freely in the subcutaneous tissue of the finger tips and by smaller branches near the interphalangeal joints. Each also gives off a couple of dorsal branches which anastomose with the dorsal digital arteries, and supply the soft parts on the back of the second and third phalanges, including the matrix of the fingernail. The proper palmar digital artery for the medial side of the little finger arises directly from the ulnar artery deep to the palmaris brevis muscle, but the rest arise from the common palmar digital arteries." [Wikipedia:Proper_palmar_digital_arteries] comment: the MA term, even though plural, represents the singular, as it is an isa child of artery synonym: "arteriae digitales palmares propriae" EXACT [FMA:70804, FMA:TA] synonym: "proper palmal digital arteries" EXACT [MA:0001959] synonym: "proper palmar digital arteries" EXACT [MA:0001959] synonym: "proper palmar digital arteries set" EXACT [FMA:70804] synonym: "proper volar digital arteries" RELATED [Wikipedia:Proper_palmar_digital_arteries] synonym: "proper volar digital artery" RELATED [Wikipedia:Proper_palmar_digital_arteries] xref: FMA:70804 xref: MA:0001959 is_a: UBERON:0006141 ! palmar digital artery [Term] id: UBERON:0006138 name: plantar digital artery xref: FMA:43971 xref: SCTID:230727008 is_a: UBERON:0004554 ! hindlimb digital artery [Term] id: UBERON:0006139 name: plantar digital vein def: "The plantar digital veins arise from plexuses on the plantar surfaces of the digits, and, after sending intercapitular veins to join the dorsal digital veins, unite to form four metatarsal veins." [Wikipedia:Plantar_digital_veins] xref: FMA:44517 is_a: UBERON:0004564 ! hindlimb digital vein [Term] id: UBERON:0006140 name: palmar digital vein def: "The palmar digital veins (or volar digital veins) on each finger are connected to the dorsal digital veins by oblique intercapitular veins. Some sources distinguish between the \"proper palmar digital veins\", which are more distal, and the \"common palmar digital veins\", which are more proximal." [Wikipedia:Palmar_digital_veins] synonym: "palmar digital veins" EXACT PLURAL [FMA:70895] synonym: "palmar digital veins set" EXACT PLURAL [FMA:70895] synonym: "venae digitales palmares" EXACT [FMA:70895, FMA:TA] synonym: "volar digital veins" RELATED [Wikipedia:Palmar_digital_veins] xref: FMA:70895 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/ba/Gray574.png/200px-Gray574.png xref: SCTID:83229009 is_a: UBERON:0004563 ! forelimb digital vein [Term] id: UBERON:0006141 name: palmar digital artery is_a: UBERON:0004553 ! forelimb digital artery [Term] id: UBERON:0006142 name: common plantar digital vein synonym: "common plantar vein" EXACT [MA:0002134] xref: MA:0002134 is_a: UBERON:0006139 ! plantar digital vein [Term] id: UBERON:0006143 name: proper plantar digital vein synonym: "proper plantar vein" EXACT [MA:0002138] xref: MA:0002138 is_a: UBERON:0006139 ! plantar digital vein [Term] id: UBERON:0006144 name: medial plantar digital vein synonym: "medial plantar vein" EXACT [MA:0002172] xref: MA:0002172 is_a: UBERON:0006139 ! plantar digital vein [Term] id: UBERON:0006145 name: dorsal digital artery of foot def: "The dorsal digital arteries of foot are small arteries which supply the toes." [Wikipedia:Dorsal_digital_arteries_of_foot] xref: FMA:44660 xref: SCTID:230173000 is_a: UBERON:0004554 ! implied link automatically realized ! hindlimb digital artery is_a: UBERON:0006163 ! implied link automatically realized ! dorsal digital artery relationship: part_of UBERON:0002103 intersection_of: UBERON:0006163 ! dorsal digital artery intersection_of: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0006146 name: dorsal digital artery of hand def: "Dorsal digital arteries arise from the bifurcation of dorsal metacarpal arteries. They travel along the sides and dorsal aspects of the phalanges of the middle finger, ring finger, and little finger. They communicate with the proper palmar digital arteries. They run with the dorsal digital nerves of ulnar nerve and dorsal digital nerves of radial nerve." [Wikipedia:Dorsal_digital_arteries] synonym: "dorsal digital artery" BROAD [Wikipedia:Dorsal_digital_arteries] xref: SCTID:91793005 is_a: UBERON:0004553 ! implied link automatically realized ! forelimb digital artery is_a: UBERON:0006163 ! implied link automatically realized ! dorsal digital artery relationship: part_of UBERON:0002102 intersection_of: UBERON:0006163 ! dorsal digital artery intersection_of: part_of UBERON:0002102 ! forelimb [Term] id: UBERON:0006163 name: dorsal digital artery synonym: "arteriae digitales dorsales" EXACT [FMA:70801, FMA:TA] synonym: "dorsal digital arteries" EXACT [FMA:70801] synonym: "dorsal digital arteries set" EXACT [FMA:70801] xref: FMA:70801 is_a: UBERON:0004552 ! digital artery [Term] id: UBERON:0006164 name: forelimb common dorsal digital arteries xref: MA:0001954 is_a: UBERON:0006146 ! dorsal digital artery of hand [Term] id: UBERON:0006165 name: median dorsal digital artery for digit 1 synonym: "median dorsal digital artery for digit 01" EXACT [MA:0001955] xref: MA:0001955 is_a: UBERON:0006146 ! dorsal digital artery of hand [Term] id: UBERON:0006166 name: lateral dorsal digital artery for digit 5 synonym: "lateral dorsal digital artery for digit 05" EXACT [MA:0001956] xref: MA:0001956 is_a: UBERON:0006146 ! dorsal digital artery of hand [Term] id: UBERON:0006167 name: forelimb proper dorsal digital arteries xref: MA:0001958 is_a: UBERON:0006146 ! dorsal digital artery of hand [Term] id: UBERON:0006168 name: hindlimb common dorsal digital arteries xref: MA:0001965 is_a: UBERON:0006145 ! dorsal digital artery of foot [Term] id: UBERON:0006169 name: hindlimb proper dorsal digital arteries xref: MA:0001967 is_a: UBERON:0006145 ! dorsal digital artery of foot [Term] id: UBERON:0006170 name: mesonephric capsule def: "The mesonephric capsule is the tough fibrous layer surrounding the mesonephros, covered in a thick layer of perinephric adipose tissue." [GO:0061285, GOC:mtg_kidney_jan10] is_a: UBERON:0002015 ! implied link automatically realized ! kidney capsule is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0000080 intersection_of: UBERON:0002015 ! kidney capsule intersection_of: part_of UBERON:0000080 ! mesonephros [Term] id: UBERON:0006171 name: renal sinus xref: FMA:15611 xref: SCTID:362222000 is_a: UBERON:0002558 ! organ cavity relationship: part_of UBERON:0002113 ! kidney [Term] id: UBERON:0006172 name: rectal diverticulum def: "The rectal diverticulum is an outgrowth of the cloaca and links the pronephric kidney to the exterior" [GO:0039009] xref: XAO:0001015 is_a: UBERON:0000061 ! anatomical structure relationship: continuous_with UBERON:0000163 ! embryonic cloaca relationship: continuous_with UBERON:0002120 ! pronephros [Term] id: UBERON:0006173 name: pronephric proximal tubule def: "A pronephric nephron tubule is an epithelial tube that is part of the pronephros" [GO:0039011] synonym: "pronephros proximal tubule" EXACT [GO:0039011] is_a: UBERON:0004134 ! implied link automatically realized ! proximal tubule relationship: part_of UBERON:0002120 intersection_of: UBERON:0004134 ! proximal tubule intersection_of: part_of UBERON:0002120 ! pronephros [Term] id: UBERON:0006174 name: pronephric sinus def: "The pronephric sinus is an ill-defined capillary network that lies between the pronephric tubules" [GO:0039012] comment: todo - check relationship to renal sinus, improve definition xref: AAO:0011092 xref: XAO:0000385 is_a: UBERON:0006171 ! implied link automatically realized ! renal sinus relationship: part_of UBERON:0002120 intersection_of: UBERON:0006171 ! renal sinus intersection_of: part_of UBERON:0002120 ! pronephros [Term] id: UBERON:0006175 name: pronephric distal tubule def: "A pronephric nephron tubule is an epithelial tube that is part of the pronephros" [GO:0039013] is_a: UBERON:0004135 ! implied link automatically realized ! distal tubule is_a: UBERON:0005310 ! pronephric nephron tubule relationship: part_of UBERON:0002120 intersection_of: UBERON:0004135 ! distal tubule intersection_of: part_of UBERON:0002120 ! pronephros [Term] id: UBERON:0006182 name: mesonephric glomerular mesangium def: "The mesonephric glomerular mesangium is the thin membrane connective tissue composed of mesangial cells in the mesonephros, which helps to support the capillary loops in a renal glomerulus" [GO:0061247] is_a: UBERON:0002320 ! implied link automatically realized ! glomerular mesangium relationship: part_of UBERON:0000080 intersection_of: UBERON:0002320 ! glomerular mesangium intersection_of: part_of UBERON:0000080 ! mesonephros [Term] id: UBERON:0006183 name: mesonephric glomerular capillary def: "." [GO:0061249] is_a: UBERON:0000083 ! implied link automatically realized ! mesonephric tubule is_a: UBERON:0004212 ! implied link automatically realized ! glomerular capillary is_a: UBERON:0005327 ! implied link automatically realized ! mesonephric glomerular epithelium relationship: part_of UBERON:0000080 intersection_of: UBERON:0004212 ! glomerular capillary intersection_of: part_of UBERON:0000080 ! mesonephros [Term] id: UBERON:0006189 name: mesonephric connecting tubule def: "The mesonephric connecting tubule is a tubular segment of the mesonephric nephron; it connects the distal tubule to the collecting duct in the mesonephros" [GO:0061272] is_a: UBERON:0000083 ! implied link automatically realized ! mesonephric tubule is_a: UBERON:0005097 ! implied link automatically realized ! connecting tubule is_a: UBERON:0005330 ! implied link automatically realized ! mesonephric nephron epithelium relationship: part_of UBERON:0000080 intersection_of: UBERON:0005097 ! connecting tubule intersection_of: part_of UBERON:0000080 ! mesonephros [Term] id: UBERON:0006190 name: mesonephric distal tubule def: "The mesonephric distal tubule is a mesonephric nephron tubule that begins at the macula densa and extends to the mesonephric connecting tubule" [GO:0061273] comment: note that ZFA has terms for developing tubule is_a: UBERON:0000083 ! implied link automatically realized ! mesonephric tubule is_a: UBERON:0004135 ! implied link automatically realized ! distal tubule is_a: UBERON:0005330 ! implied link automatically realized ! mesonephric nephron epithelium relationship: part_of UBERON:0000080 intersection_of: UBERON:0004135 ! distal tubule intersection_of: part_of UBERON:0000080 ! mesonephros [Term] id: UBERON:0006192 name: mesonephric proximal tubule def: "The mesonephric proximal tubule extends from the capsule to the distal tubule" [GO:0061275] comment: note that ZFA has terms for developing tubule is_a: UBERON:0000083 ! implied link automatically realized ! mesonephric tubule is_a: UBERON:0004134 ! implied link automatically realized ! proximal tubule is_a: UBERON:0005330 ! implied link automatically realized ! mesonephric nephron epithelium relationship: part_of UBERON:0000080 intersection_of: UBERON:0004134 ! proximal tubule intersection_of: part_of UBERON:0000080 ! mesonephros [Term] id: UBERON:0006194 name: renal sinus of right kidney synonym: "right renal sinus" EXACT [FMA:17621] xref: FMA:17621 is_a: UBERON:0006171 ! implied link automatically realized ! renal sinus relationship: part_of UBERON:0004539 intersection_of: UBERON:0006171 ! renal sinus intersection_of: part_of UBERON:0004539 ! right kidney [Term] id: UBERON:0006195 name: renal sinus of left kidney synonym: "left renal sinus" EXACT [FMA:17622] xref: FMA:17622 is_a: UBERON:0006171 ! implied link automatically realized ! renal sinus relationship: part_of UBERON:0004538 intersection_of: UBERON:0006171 ! renal sinus intersection_of: part_of UBERON:0004538 ! left kidney [Term] id: UBERON:0006196 name: mesonephric sinus comment: todo - check relationship to renal sinus, add definition xref: AAO:0011063 xref: XAO:0000381 is_a: UBERON:0006171 ! implied link automatically realized ! renal sinus relationship: part_of UBERON:0000080 intersection_of: UBERON:0006171 ! renal sinus intersection_of: part_of UBERON:0000080 ! mesonephros [Term] id: UBERON:0006197 name: auricular vein xref: ncithesaurus:Auricular_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0006198 name: dorsal intercostal artery def: "The highest intercostal artery (supreme intercostal artery, superior intercostal artery) is an artery in the human body that usually gives rise to the first and second posterior intercostal arteries, which supply blood to their corresponding intercostal space. It usually arises from the costocervical trunk, which is a branch of the subclavian artery." [Wikipedia:Highest_intercostal_artery] comment: classes unified on basis of spatial anatomy ontology synonyms synonym: "dorsal branch of superior intercostal artery" RELATED [http://www.mondofacto.com/facts/dictionary?dorsal+branch+of+the+superior+intercostal+artery] synonym: "superior intercostal artery" EXACT [FMA:76998, Wikipedia:Highest_intercostal_artery] synonym: "supreme intercostal artery" EXACT [FMA:76998, Wikipedia:Highest_intercostal_artery] xref: FMA:76998 xref: MA:0001943 xref: SCTID:198427009 is_a: UBERON:0005612 ! intercostal artery [Term] id: UBERON:0006199 name: caudal auricular vein def: "The posterior auricular vein begins upon the side of the head, in a plexus which communicates with the tributaries of the occipital vein and superficial temporal veins. It descends behind the auricula, and joins the posterior division of the posterior facial vein to form the external jugular. It receive the stylomastoid vein, and some tributaries from the cranial surface of the auricula." [Wikipedia:Posterior_auricular_vein] comment: classes unified on basis of spatial anatomy ontology synonyms synonym: "posterior auricular vein" EXACT [FMA:50851] xref: FMA:50851 xref: MA:0002090 xref: ncithesaurus:Posterior_Auricular_Vein xref: SCTID:150188002 is_a: UBERON:0006197 ! auricular vein relationship: tributary_of UBERON:0001101 {source="FMA/obol"} ! external jugular vein relationship: tributary_of UBERON:0001587 {source="FMA/obol"} ! subclavian vein [Term] id: UBERON:0006200 name: caudal humeral circumflex vein comment: classes unified on basis of spatial anatomy ontology synonyms synonym: "posterior circumflex humeral vein" EXACT [FMA:71216] synonym: "posterior humeral circumflex vein" EXACT [FMA:71216] synonym: "vena circumflexa humeri posterior" EXACT [FMA:71216, FMA:TA] xref: FMA:71216 xref: MA:0002091 is_a: UBERON:0001638 ! vein relationship: tributary_of UBERON:0000985 {source="FMA/obol"} ! axillary vein relationship: tributary_of UBERON:0001587 {source="FMA/obol"} ! subclavian vein [Term] id: UBERON:0006201 name: dorsal cerebral vein comment: classes unified on basis of spatial anatomy ontology synonyms synonym: "superior cerebral vein" EXACT [FMA:50978] xref: FMA:50978 xref: MA:0002103 xref: SCTID:244393005 is_a: UBERON:0001663 ! cerebral vein [Term] id: UBERON:0006202 name: ventral labial vein def: "The inferior labial vein is the vein receiving blood from the lower lip." [Wikipedia:Inferior_labial_vein] comment: classes unified on basis of spatial anatomy ontology synonyms synonym: "inferior labial vein" EXACT [FMA:52541] xref: FMA:52541 xref: MA:0002260 xref: SCTID:422955002 is_a: UBERON:0001638 ! vein relationship: tributary_of UBERON:0001653 {source="FMA/obol"} ! facial vein [Term] id: UBERON:0006203 name: conchal part of pinna synonym: "concha" BROAD [FMA:61006] synonym: "concha auriculae" EXACT [FMA:61006, FMA:TA] synonym: "concha of auricle" EXACT [FMA:61006] synonym: "concha of pinna" EXACT [FMA:61006] xref: FMA:61006 xref: ncithesaurus:Concha is_a: UBERON:0000064 ! organ part disjoint_from: UBERON:0001762 ! nasal concha relationship: part_of UBERON:0001757 ! pinna [Term] id: UBERON:0006204 name: inguinal ligament def: "a band running from the pubic tubercle to the anterior superior iliac spine. Its anatomy is very important for operating on hernia patients. It forms the base of the inguinal canal through which an indirect inguinal hernia may develop. The inguinal ligament runs from the anterior superior iliac spine of the ilium to the pubic tubercle of the pubic bone. It is formed by the external abdominal oblique aponeurosis and is continuous with the fascia lata of the thigh." [Wikipedia:Inguinal_ligament] synonym: "fallopian ligament" EXACT DUBIOUS [FMA:19855, Wikipedia:Inguinal_ligament] synonym: "Poupart's ligament" EXACT DUBIOUS [FMA:19855, Wikipedia:Inguinal_ligament] synonym: "Vesalius' ligament" EXACT [FMA:19855] xref: FMA:19855 xref: SCTID:361900000 is_a: UBERON:0000211 ! ligament is_a: UBERON:0003567 ! implied link automatically realized ! abdomen connective tissue is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0005442 ! external oblique [Term] id: UBERON:0006205 name: pectineal ligament comment: we include a disjointness axiom to avoid confusion that may arise from the synonyms 'ligamentum pectineale' and 'ligamentum pectinum' synonym: "cooper's ligament (groin)" EXACT [FMA:20188] synonym: "ligamentum pectineale" EXACT [FMA:20188] xref: FMA:20188 xref: SCTID:256661003 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure disjoint_from: UBERON:0005969 ! reticulum trabeculare relationship: part_of UBERON:0006204 ! inguinal ligament [Term] id: UBERON:0006206 name: iridocorneal angle def: "acute angle occurring between the iris and the cornea at the periphery of the anterior chamber of the eye[MP]." [MP:0004221] synonym: "anterior chamber angle" EXACT [FMA:58577] xref: FMA:58577 xref: SCTID:244498000 is_a: UBERON:0000015 ! anatomical boundary relationship: part_of UBERON:0003956 ! aqueous drainage system [Term] id: UBERON:0006207 name: aortico-pulmonary spiral septum def: "The aorticopulmonary septum is developmentally formed from neural crest, specifically the cardiac neural crest, and actively separates the aorta and pulmonary arteries and fuses with the interventricular septum within the heart during development. The actual mechanism of septation of the outflow tract is poorly understood, but is recognized as a dynamic process with contributions from contractile, hemodynamic, and extracellular matrix interactions." [Wikipedia:Aorticopulmonary_septum] subset: emapa_ehdaa2 synonym: "aortic septum" RELATED [Wikipedia:Aorticopulmonary_septum] synonym: "aortico-pulmonary septum" RELATED [Wikipedia:Aorticopulmonary_septum] synonym: "aorticopulmonary septum" RELATED [Wikipedia:Aorticopulmonary_septum] synonym: "spiral septum" RELATED [Wikipedia:Aorticopulmonary_septum] xref: EHDAA:2592 xref: EHDAA2:0000136 xref: EMAPA:16827 xref: OG:0000502 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: develops_from UBERON:0002342 {source="Wikipedia"} ! neural crest relationship: part_of UBERON:0004145 {source="EMAPA"} ! outflow tract [Term] id: UBERON:0006208 name: auditory hillocks subset: emapa_ehdaa2 xref: EHDAA:4685 xref: EHDAA2:0000155 xref: EMAPA:17280 xref: OG:0001364 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0001691 ! external ear [Term] id: UBERON:0006209 name: basioccipital cartilage condensation subset: emapa_ehdaa2 xref: EHDAA:7141 xref: EHDAA2:0000164 xref: EMAPA:18337 xref: OG:0001124 is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_from UBERON:0009197 {source="EHDAA2"} ! basioccipital pre-cartilage condensation relationship: develops_into UBERON:0001692 ! basioccipital bone [Term] id: UBERON:0006210 name: body-wall mesenchyme subset: emapa_ehdaa2 xref: EHDAA:3217 xref: EHDAA2:0000179 xref: EMAPA:16893 is_a: UBERON:0003104 ! mesenchyme [Term] id: UBERON:0006211 name: buccopharyngeal membrane def: "The region where the crescentic masses of the ectoderm and endoderm come into direct contact with each other constitutes a thin membrane, the buccopharyngeal membrane (or oropharyngeal membrane), which forms a septum between the primitive mouth and pharynx. In front of the buccopharyngeal area, where the lateral crescents of mesoderm fuse in the middle line, the pericardium is afterward developed, and this region is therefore designated the pericardial area." [Wikipedia:Buccopharyngeal_membrane] subset: emapa_ehdaa2 synonym: "oropharyngeal membrane" RELATED [Wikipedia:Buccopharyngeal_membrane] xref: EHDAA:536 xref: EHDAA2:0000189 xref: EMAPA:16259 xref: OG:0000380 xref: SCTID:361412007 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0003037 ! septum relationship: has_part UBERON:0000924 ! ectoderm relationship: has_part UBERON:0000925 ! endoderm relationship: overlaps UBERON:0000930 ! stomodeum relationship: overlaps UBERON:0001042 ! chordate pharynx relationship: part_of UBERON:0006264 {source="EHDAA2"} ! mouth-foregut junction [Term] id: UBERON:0006212 name: bulbo-ventricular groove subset: emapa_ehdaa2 xref: EHDAA:766 xref: EHDAA2:0000195 xref: EMAPA:16693 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0000948 ! heart [Term] id: UBERON:0006213 name: carpus cartilage condensation subset: emapa_ehdaa2 xref: EHDAA:8544 xref: EHDAA2:0000221 xref: EMAPA:18102 xref: OG:0001123 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_into UBERON:0004452 ! carpus [Term] id: UBERON:0006214 name: carpus pre-cartilage condensation subset: emapa_ehdaa2 xref: EHDAA:6324 xref: EHDAA2:0000222 xref: EMAPA:17724 xref: OG:0000955 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_into UBERON:0004452 ! carpus [Term] id: UBERON:0006215 name: rhombic lip def: "The interface between the dorsal neuroepithelium and the roof plate of the fourth ventricle. The source of a number of migratory neuron populations of the hindbrain." [ZFIN:curator] subset: vertebrate_core synonym: "cerebellum primordium" RELATED [EMAPA:17074] synonym: "dorsal part of alar plate of metencephalon" RELATED [EMAPA:17074] xref: EHDAA2:0000229 xref: EMAPA:17074 xref: XAO:0004135 xref: ZFA:0001440 is_a: UBERON:0001048 ! primordium relationship: develops_into UBERON:0002037 ! cerebellum relationship: part_of UBERON:0002028 ! hindbrain [Term] id: UBERON:0006216 name: cervical sinus def: "The mandibular and hyoid arches grow more rapidly than those behind them, with the result that the latter become, to a certain extent, telescoped within the former, and a deep depression, the cervical sinus, is formed on either side of the neck. This sinus is bounded in front by the hyoid arch, and behind by the thoracic wall; it is ultimately obliterated by the fusion of its walls." [Wikipedia:Cervical_sinus] subset: emapa_ehdaa2 xref: EHDAA2:0000078 xref: EHDAA2:0000239 xref: EMAPA:17526 is_a: UBERON:0002050 ! embryonic structure [Term] id: UBERON:0006217 name: cloacal membrane def: "The cloacal membrane is the membrane that covers the embryonic cloaca when still in the development of the urinary and reproductive organs. It is formed by ectoderm and endoderm coming into contact with each other. After separation of the cloaca into the urogenital and anal parts, the cloacal membrane, in turn, is separated into a urogenital membrane and an anal membrane." [Wikipedia:Cloacal_membrane] subset: emapa_ehdaa2 xref: EHDAA:214 xref: EHDAA:2933 xref: EHDAA2:0000257 xref: EMAPA:16832 xref: ncithesaurus:Cloacal_Membrane xref: OG:0001198 xref: SCTID:308826008 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002050 ! embryonic structure relationship: develops_from UBERON:0004341 {source="Wikipedia"} ! primitive streak relationship: part_of UBERON:0000163 ! embryonic cloaca [Term] id: UBERON:0006218 name: common atrial chamber subset: emapa_ehdaa2 xref: EHDAA:1267 xref: EHDAA2:0000268 xref: EMAPA:16225 xref: EMAPA:16342 xref: EMAPA:16689 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0002081 ! cardiac atrium [Term] id: UBERON:0006219 name: deltoid pre-muscle mass subset: emapa_ehdaa2 xref: EHDAA:6002 xref: EHDAA2:0000340 xref: EMAPA:17749 is_a: UBERON:0008714 ! pre-muscle mass [Term] id: UBERON:0006220 name: diencephalic part of interventricular foramen subset: emapa_ehdaa2 xref: EHDAA:3476 xref: EHDAA2:0000384 xref: EMAPA:16643 xref: EMAPA:16901 xref: OG:0000808 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0002286 ! third ventricle [Term] id: UBERON:0006222 name: future diencephalon subset: emapa_ehdaa2 subset: vertebrate_core xref: EFO:0003442 xref: EHDAA:844 xref: EHDAA2:0000386 xref: EMAPA:16514 xref: ZFA:0000574 is_a: UBERON:0002050 ! embryonic structure relationship: develops_into UBERON:0001894 ! diencephalon [Term] id: UBERON:0006223 name: dorsal meso-oesophagus subset: emapa_ehdaa2 xref: EHDAA:2945 xref: EHDAA2:0000412 xref: EMAPA:16704 xref: EMAPA:16837 xref: EMAPA:18865 xref: MA:0001570 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0003283 ! mesentery of oesophagus [Term] id: UBERON:0006224 name: elbow joint primordium subset: emapa_ehdaa2 xref: EHDAA:8483 xref: EHDAA2:0000431 xref: EMAPA:17710 is_a: UBERON:0001048 ! primordium relationship: develops_into UBERON:0001490 ! elbow joint relationship: part_of UBERON:0003318 ! mesenchyme of elbow [Term] id: UBERON:0006225 name: endocardial tissue comment: consider merging with endocardium subset: emapa_ehdaa2 xref: EHDAA2:0000435 xref: EMAPA:17868 is_a: UBERON:0002050 ! embryonic structure [Term] id: UBERON:0006226 name: endolymphatic appendage subset: emapa_ehdaa2 xref: EHDAA2:0000437 xref: EMAPA:16994 xref: EMAPA:17283 xref: OG:0000373 is_a: UBERON:0002050 ! embryonic structure [Term] id: UBERON:0006227 name: ethmoid bone primordium comment: check UBERON:0007215 subset: emapa_ehdaa2 xref: EHDAA:8363 xref: EHDAA2:0000456 xref: EMAPA:18023 is_a: UBERON:0001048 ! primordium relationship: develops_from UBERON:0007213 {source="EHDAA2"} ! mesenchyme derived from head neural crest relationship: develops_into UBERON:0001679 ! ethmoid [Term] id: UBERON:0006228 name: exoccipital pre-cartilage condensation subset: emapa_ehdaa2 xref: EHDAA:8355 xref: EHDAA2:0000457 xref: EMAPA:18014 xref: OG:0000963 is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_into UBERON:0001693 ! exoccipital bone [Term] id: UBERON:0006230 name: extrinsic ocular pre-muscle mass subset: emapa_ehdaa2 xref: EHDAA:2925 xref: EHDAA2:0000483 xref: EMAPA:17845 is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0008714 ! pre-muscle mass relationship: develops_from UBERON:0003314 {source="EHDAA2"} ! eye mesenchyme relationship: part_of UBERON:0003269 {source="EHDAA2"} ! skeletal muscle of eye [Term] id: UBERON:0006231 name: facial bones primordia subset: emapa_ehdaa2 xref: EHDAA:9552 xref: EHDAA2:0000488 xref: EMAPA:18024 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001704 ! viscerocranium [Term] id: UBERON:0006232 name: facio-acoustic VII-VIII preganglion complex subset: emapa_ehdaa2 xref: EHDAA:1477 xref: EHDAA2:0000496 xref: EMAPA:16660 xref: OG:0000715 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: develops_from UBERON:0005565 ! facio-acoustic neural crest relationship: part_of UBERON:0005706 {source="EHDAA2"} ! central nervous system cranial ganglion [Term] id: UBERON:0006233 name: female genital tubercle subset: emapa_ehdaa2 xref: EHDAA:8118 xref: EHDAA2:0000500 xref: EMAPA:18680 xref: OG:0000666 is_a: UBERON:0005876 ! implied link automatically realized ! genital tubercle relationship: part_of UBERON:0000474 intersection_of: UBERON:0005876 ! genital tubercle intersection_of: part_of UBERON:0000474 ! female reproductive system [Term] id: UBERON:0006234 name: femur pre-cartilage condensation subset: emapa_ehdaa2 xref: EHDAA2:0000508 xref: EMAPA:17502 xref: OG:0000951 is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_into UBERON:0000981 ! femur [Term] id: UBERON:0006235 name: foregut-midgut junction subset: emapa_ehdaa2 xref: EHDAA:526 xref: EHDAA2:0000569 xref: EMAPA:16363 xref: OG:0000291 is_a: UBERON:0000015 ! implied link automatically realized ! anatomical boundary relationship: adjacent_to UBERON:0001041 relationship: adjacent_to UBERON:0001045 intersection_of: UBERON:0000015 ! anatomical boundary intersection_of: adjacent_to UBERON:0001041 ! foregut intersection_of: adjacent_to UBERON:0001045 ! midgut relationship: part_of UBERON:0001555 ! digestive tract [Term] id: UBERON:0006236 name: frontal bone primordium subset: emapa_ehdaa2 xref: EHDAA:9540 xref: EHDAA2:0000577 xref: EMAPA:18017 is_a: UBERON:0002050 ! embryonic structure [Term] id: UBERON:0006238 name: future brain comment: obsoleted in EHDAA2 subset: emapa_ehdaa2 subset: vertebrate_core synonym: "presumptive brain" EXACT [ZFA:0000146] xref: EFO:0003431 xref: EHDAA:300 xref: EHDAA:830 xref: EHDAA2:0000591 xref: EMAPA:16089 xref: EMAPA:16471 xref: ZFA:0000146 is_a: UBERON:0005423 ! developing anatomical structure relationship: develops_into UBERON:0000955 ! brain relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0006239 name: future central tendon subset: emapa_ehdaa2 xref: EHDAA:4118 xref: EHDAA2:0000593 xref: EMAPA:25035 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0006240 name: future forebrain comment: TODO. Add relationships to neural plate (both ZFA and EMAPA time this with the neural plate) subset: emapa_ehdaa2 subset: vertebrate_core synonym: "presumptive forebrain" EXACT [ZFA:0000062] synonym: "prosencephalon" RELATED [] xref: EFO:0003423 xref: EHDAA:2643 xref: EMAPA:16640 xref: ZFA:0000062 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0005423 ! developing anatomical structure relationship: develops_into UBERON:0001890 ! forebrain relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0006238 ! future brain [Term] id: UBERON:0006241 name: future spinal cord subset: vertebrate_core synonym: "presumptive spinal cord" EXACT [ZFA:0000417] xref: EFO:0003438 xref: EHDAA:898 xref: EHDAA2:0000674 xref: EMAPA:16092 xref: EMAPA:16525 xref: EMAPA:16755 xref: ZFA:0000417 is_a: UBERON:0005423 ! developing anatomical structure relationship: develops_into UBERON:0002240 ! spinal cord relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0001017 ! central nervous system [Term] id: UBERON:0006242 name: gall bladder primordium subset: emapa_ehdaa2 xref: EHDAA:3047 xref: EHDAA2:0000700 xref: EMAPA:16713 xref: EMAPA:16842 xref: XAO:0004205 is_a: UBERON:0001048 ! primordium is_a: UBERON:0005423 ! developing anatomical structure relationship: develops_into UBERON:0002110 ! gallbladder relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0002423 ! hepatobiliary system relationship: part_of UBERON:0004912 ! biliary bud [Term] id: UBERON:0006243 name: glossopharyngeal IX preganglion subset: emapa_ehdaa2 xref: EHDAA:1479 xref: EHDAA2:0000713 xref: EMAPA:16661 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0005706 ! central nervous system cranial ganglion [Term] id: UBERON:0006244 name: hip joint primordium subset: emapa_ehdaa2 xref: EHDAA:8462 xref: EHDAA2:0000785 xref: EMAPA:17739 is_a: UBERON:0001048 ! primordium relationship: develops_into UBERON:0001486 ! hip joint relationship: part_of UBERON:0003320 ! mesenchyme of hip [Term] id: UBERON:0006245 name: humerus cartilage condensation subset: emapa_ehdaa2 xref: EHDAA:6240 xref: EHDAA2:0000787 xref: EMAPA:17713 xref: OG:0001120 is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_into UBERON:0000976 ! humerus [Term] id: UBERON:0006246 name: humerus pre-cartilage condensation subset: emapa_ehdaa2 xref: EHDAA:4192 xref: EHDAA2:0000788 xref: EMAPA:17427 xref: OG:0000950 is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_into UBERON:0000976 ! humerus [Term] id: UBERON:0006247 name: iliac cartilage condensation subset: emapa_ehdaa2 xref: EHDAA:9568 xref: EHDAA2:0000809 xref: EMAPA:18029 xref: EMAPA:18347 xref: OG:0001126 is_a: UBERON:0005863 ! cartilaginous condensation relationship: part_of UBERON:0001271 ! pelvic girdle [Term] id: UBERON:0006248 name: incus pre-cartilage condensation subset: emapa_ehdaa2 xref: EHDAA:9024 xref: EHDAA2:0000813 xref: EMAPA:17825 xref: OG:0000957 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_into UBERON:0001688 ! incus [Term] id: UBERON:0006249 name: inferior recess subset: emapa_ehdaa2 xref: EHDAA:6083 xref: EHDAA2:0000825 xref: EMAPA:18048 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001341 ! lesser sac [Term] id: UBERON:0006250 name: infundibular recess of 3rd ventricle def: "The floor of the third ventricle is prolonged downward as a funnel-shaped recess, the infundibular recess, into the infundibulum, and to the apex of the latter the hypophysis or pititary is attached" [Wikipedia:Infundibular_recess] comment: Editor note: in FMA this is a cavity, whereas in EHDAA2 it is an epithelial sac synonym: "infundibular recess" EXACT [FMA:78456] synonym: "recessus infundibularis" EXACT [FMA:TA] synonym: "recessus infundibuli" EXACT [FMA:TA] xref: EHDAA:4479 xref: EHDAA2:0000827 xref: EMAPA:16648 xref: EMAPA:16899 xref: FMA:78456 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue is_a: UBERON:0007499 {source="EHDAA2"} ! epithelial sac relationship: develops_from UBERON:0003309 {source="EHDAA2"} ! floor plate of diencephalon relationship: part_of UBERON:0000007 {source="EHDAA2"} ! pituitary gland [Term] id: UBERON:0006251 name: interparietal bone primordium subset: emapa_ehdaa2 xref: EHDAA2:0000881 xref: EMAPA:18018 is_a: UBERON:0001048 ! primordium relationship: develops_into UBERON:0002229 ! interparietal bone [Term] id: UBERON:0006252 name: intersubcardinal venous anastomosis subset: emapa_ehdaa2 xref: EHDAA:3452 xref: EHDAA2:0000883 xref: EMAPA:16828 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0004581 ! systemic venous system [Term] id: UBERON:0006253 name: intraretinal space subset: emapa_ehdaa2 xref: EHDAA:4761 xref: EHDAA2:0000889 xref: EMAPA:16676 xref: EMAPA:17170 xref: OG:0000534 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0000966 ! retina [Term] id: UBERON:0006254 name: ischial cartilage condensation subset: emapa_ehdaa2 xref: EHDAA:9570 xref: EHDAA2:0000890 xref: EMAPA:26930 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0001271 ! pelvic girdle [Term] id: UBERON:0006255 name: ischial pre-cartilage condensation subset: emapa_ehdaa2 xref: EHDAA:7153 xref: EHDAA2:0000891 xref: EMAPA:18348 xref: OG:0000962 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0001271 ! pelvic girdle [Term] id: UBERON:0006256 name: knee joint primordium subset: emapa_ehdaa2 xref: EHDAA:8467 xref: EHDAA2:0000897 xref: EMAPA:17740 is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: develops_into UBERON:0001485 ! knee joint relationship: part_of UBERON:0003321 ! mesenchyme of knee [Term] id: UBERON:0006257 name: laryngo-tracheal groove subset: emapa_ehdaa2 xref: EHDAA2:0000909 xref: EHDAA2:0004073 xref: EMAPA:16739 xref: SCTID:361426003 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: part_of UBERON:0001558 ! lower respiratory tract [Term] id: UBERON:0006258 name: lateral plate mesenchyme comment: todo - merge subset: emapa_ehdaa2 xref: EHDAA:379 xref: EHDAA2:0000919 xref: EMAPA:16179 is_a: UBERON:0003104 {source="Obol"} ! mesenchyme is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue relationship: part_of UBERON:0003081 {source="Obol"} ! lateral plate mesoderm [Term] id: UBERON:0006259 name: lens pit def: "a pitlike depression in the ectoderm of the lens placode where the primordial lens is developing[TFD]." [http://medical-dictionary.thefreedictionary.com/lens+pit] subset: emapa_ehdaa2 xref: EHDAA:3809 xref: EHDAA2:0000981 xref: EMAPA:16799 xref: ncithesaurus:Lens_Pit xref: OG:0000806 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000019 ! camera-type eye relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0000965 ! lens [Term] id: UBERON:0006260 name: lingual swelling subset: emapa_ehdaa2 xref: EHDAA2:0000996 xref: EMAPA:17186 xref: OG:0000449 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0006261 name: male genital tubercle subset: emapa_ehdaa2 xref: EHDAA:8138 xref: EHDAA2:0001048 xref: EMAPA:17969 xref: OG:0000667 is_a: UBERON:0005876 ! implied link automatically realized ! genital tubercle relationship: part_of UBERON:0000079 intersection_of: UBERON:0005876 ! genital tubercle intersection_of: part_of UBERON:0000079 ! male reproductive system [Term] id: UBERON:0006262 name: malleus pre-cartilage condensation subset: emapa_ehdaa2 xref: EHDAA:9026 xref: EHDAA2:0001055 xref: EMAPA:17826 xref: OG:0000958 is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_into UBERON:0001689 ! malleus [Term] id: UBERON:0006263 name: Meckel's cartilage pre-cartilage condensation subset: emapa_ehdaa2 xref: EHDAA2:0001074 xref: EMAPA:17358 xref: OG:0001121 is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue is_a: UBERON:0005423 ! developing anatomical structure is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_into UBERON:0003107 ! Meckel's cartilage relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0006264 name: mouth-foregut junction subset: emapa_ehdaa2 xref: EHDAA:534 xref: EHDAA2:0001205 xref: EMAPA:16258 xref: OG:0000592 is_a: UBERON:0000015 ! implied link automatically realized ! anatomical boundary relationship: adjacent_to UBERON:0000165 relationship: adjacent_to UBERON:0001041 intersection_of: UBERON:0000015 ! anatomical boundary intersection_of: adjacent_to UBERON:0000165 ! mouth intersection_of: adjacent_to UBERON:0001041 ! foregut relationship: part_of UBERON:0005409 ! gastrointestinal system [Term] id: UBERON:0006265 name: mural trophectoderm def: "Trophectoderm that surrounds blastocyst cavity." [PMID:16341078] subset: early_development subset: emapa_ehdaa2 xref: EHDAA:58 xref: EHDAA2:0001206 xref: EMAPA:16047 xref: OG:0000597 is_a: UBERON:0000478 ! extraembryonic structure relationship: part_of UBERON:0004345 ! trophectoderm relationship: surrounds UBERON:0000090 ! blastocele [Term] id: UBERON:0006266 name: nasolacrimal groove def: "On the nasal surface of the body of the maxilla, in front of the opening of the sinus is a deep groove, the lacrimal groove (or lacrimal sulcus), which is converted into the nasolacrimal canal, by the lacrimal bone and inferior nasal concha; this canal opens into the inferior meatus of the nose and transmits the nasolacrimal duct." [Wikipedia:Lacrimal_groove] subset: emapa_ehdaa2 xref: EHDAA:4770 xref: EHDAA2:0001238 xref: EMAPA:16679 xref: ncithesaurus:Nasolacrimal_Groove xref: OG:0001307 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000004 ! olfactory apparatus relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0006267 name: notochordal plate subset: emapa_ehdaa2 xref: EHDAA:264 xref: EHDAA2:0001278 xref: EMAPA:16101 xref: ncithesaurus:Notochordal_Plate xref: OG:0001212 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0006268 name: notochordal process subset: emapa_ehdaa2 xref: EHDAA:224 xref: EHDAA2:0001279 xref: EMAPA:16102 xref: ncithesaurus:Notochordal_Process xref: OG:0001213 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0006269 name: optic foramen subset: emapa_ehdaa2 xref: EHDAA:10646 xref: EHDAA2:0001312 xref: EMAPA:18716 xref: OG:0001408 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0001704 ! viscerocranium [Term] id: UBERON:0006270 name: optic pit subset: emapa_ehdaa2 xref: EHDAA:944 xref: EHDAA2:0001316 xref: EMAPA:16325 xref: OG:0001162 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000019 ! camera-type eye relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0006271 name: orbital fissure subset: emapa_ehdaa2 xref: EHDAA:10648 xref: EHDAA2:0001328 xref: EMAPA:18717 xref: SCTID:280546005 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0001704 ! viscerocranium [Term] id: UBERON:0006272 name: oronasal cavity def: "In humans, the oronasal membrane ruptures during the seventh week, producing a single, large oronasal cavity" [http://cwx.prenhall.com/bookbind/pubbooks/martini10/chapter24/custom3/deluxe-content.html] subset: emapa_ehdaa2 xref: EHDAA:5882 xref: EHDAA2:0001331 xref: EMAPA:17200 xref: OG:0001352 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0000166 ! oral opening relationship: replaces UBERON:0009672 ! oronasal membrane [Term] id: UBERON:0006273 name: otic pit subset: emapa_ehdaa2 xref: EHDAA:929 xref: EHDAA2:0001336 xref: EMAPA:16536 xref: ncithesaurus:Otic_Pit xref: OG:0001147 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0006274 name: parietal bone primordium subset: emapa_ehdaa2 xref: EHDAA:9544 xref: EHDAA2:0001404 xref: EMAPA:18019 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0006275 name: pericardio-peritoneal canal subset: emapa_ehdaa2 xref: EHDAA:636 xref: EHDAA2:0001440 xref: EMAPA:16282 xref: ncithesaurus:Pericardioperitoneal_Canal xref: OG:0000564 xref: SCTID:361428002 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0002323 ! body cavity [Term] id: UBERON:0006276 name: perioptic mesenchyme subset: emapa_ehdaa2 xref: EHDAA:4751 xref: EHDAA2:0001444 xref: EMAPA:17167 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000019 ! camera-type eye relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0006277 name: pleuropericardial canals subset: emapa_ehdaa2 xref: EHDAA:4122 xref: EHDAA2:0001479 xref: EMAPA:17704 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0006278 name: pleuropericardial folds subset: emapa_ehdaa2 xref: EHDAA:4126 xref: EHDAA2:0001480 xref: EMAPA:17706 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0006279 name: pleuroperitoneal canal subset: emapa_ehdaa2 xref: EHDAA:4128 xref: EHDAA2:0001481 xref: EMAPA:17707 xref: EMAPA:25031 xref: SCTID:361413002 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0006280 name: polar trophectoderm def: "Trophectoderm that surrounds the inner cell mass (ICM)." [PMID:16341078] subset: early_development subset: emapa_ehdaa2 xref: EHDAA:60 xref: EHDAA2:0001484 xref: EMAPA:16048 xref: OG:0000980 is_a: UBERON:0000478 ! extraembryonic structure relationship: develops_from UBERON:0004345 {source="EHDAA2"} ! trophectoderm relationship: part_of UBERON:0004345 {source="EMAPA"} ! trophectoderm relationship: surrounds UBERON:0000087 ! inner cell mass [Term] id: UBERON:0006281 name: pre-hepatic part subset: emapa_ehdaa2 xref: EHDAA:8701 xref: EHDAA2:0001492 xref: EMAPA:18422 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0006282 name: primary head vein subset: emapa_ehdaa2 xref: EHDAA:818 xref: EHDAA2:0001498 xref: EMAPA:16242 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0004581 ! systemic venous system relationship: part_of UBERON:0004582 ! venous system [Term] id: UBERON:0006283 name: primitive ventricle of heart subset: emapa_ehdaa2 synonym: "primitive ventricle" EXACT [EHDAA2:0001531] xref: EHDAA2:0001531 xref: EMAPA:16233 xref: EMAPA:16350 xref: SCTID:361524003 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0005498 {source="EMAPA"} ! primitive heart tube [Term] id: UBERON:0006284 name: prosencephalic vesicle comment: todo - all vesicles subset: emapa_ehdaa2 xref: EHDAA:1356 xref: EHDAA2:0001571 xref: EMAPA:16521 xref: OG:0000644 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0006285 name: pubic cartilage condensation subset: emapa_ehdaa2 xref: EHDAA:9572 xref: EHDAA2:0001574 xref: EMAPA:18349 xref: EMAPA:26928 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0001271 ! pelvic girdle [Term] id: UBERON:0006286 name: radius cartilage condensation subset: emapa_ehdaa2 xref: EHDAA:7267 xref: EHDAA2:0001585 xref: EMAPA:18054 xref: OG:0001318 is_a: UBERON:0003327 ! implied link automatically realized ! mesenchyme of forearm is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_into UBERON:0001423 ! radius relationship: part_of UBERON:0003327 ! mesenchyme of forearm [Term] id: UBERON:0006287 name: radius-ulna pre-cartilage condensation subset: emapa_ehdaa2 xref: EHDAA:4178 xref: EHDAA2:0001587 xref: EMAPA:17420 xref: OG:0000949 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0003327 ! mesenchyme of forearm [Term] id: UBERON:0006288 name: rib cartilage condensation subset: emapa_ehdaa2 xref: EHDAA:8347 xref: EHDAA2:0001716 xref: EMAPA:17678 xref: OG:0001122 is_a: UBERON:0005256 ! implied link automatically realized ! trunk mesenchyme is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue is_a: UBERON:0005423 ! developing anatomical structure is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_into UBERON:0002228 ! rib relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0005482 ! thoracic region relationship: part_of UBERON:0006073 ! thoracic region of vertebral column [Term] id: UBERON:0006289 name: rib pre-cartilage condensation subset: emapa_ehdaa2 xref: EHDAA:6026 xref: EHDAA2:0001717 xref: EMAPA:17397 xref: OG:0000681 is_a: UBERON:0005256 ! implied link automatically realized ! trunk mesenchyme is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue is_a: UBERON:0005423 ! developing anatomical structure is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_into UBERON:0002228 ! rib relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0005482 ! thoracic region relationship: part_of UBERON:0006073 ! thoracic region of vertebral column [Term] id: UBERON:0006290 name: scapula cartilage condensation subset: emapa_ehdaa2 xref: EHDAA:8368 xref: EHDAA2:0001777 xref: EMAPA:18343 xref: OG:0001125 is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue is_a: UBERON:0005423 ! developing anatomical structure is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_into UBERON:0006849 ! scapula relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0006291 name: scapula pre-cartilage condensation subset: emapa_ehdaa2 xref: EHDAA:6041 xref: EHDAA2:0001778 xref: EMAPA:18027 xref: OG:0000960 is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue is_a: UBERON:0005423 ! developing anatomical structure is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_into UBERON:0006849 ! scapula relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0006292 name: shoulder joint primordium subset: emapa_ehdaa2 xref: EHDAA:8493 xref: EHDAA2:0001836 xref: EMAPA:17712 is_a: UBERON:0001048 ! primordium is_a: UBERON:0005423 ! developing anatomical structure relationship: develops_into UBERON:0001470 ! glenohumeral joint relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0001440 ! forelimb skeleton relationship: part_of UBERON:0003322 ! mesenchyme of shoulder [Term] id: UBERON:0006293 name: spleen primordium def: "A dense syncitial-like mesenchymal thickening in the dorsal mesogastrium." [ISBN:0123747295] comment: todo - check difference between splenic and spleen in EMAPA synonym: "left spleen primordium" NARROW [XAO:0000326] synonym: "splenic primordium" EXACT [EHDAA2:0001904] xref: EHDAA:3003 xref: EHDAA2:0001904 xref: EMAPA:18535 xref: EMAPA:18659 xref: XAO:0000326 is_a: UBERON:0001048 {source="XAO"} ! primordium relationship: develops_from UBERON:0004872 {source="XAO"} ! splanchnic layer of lateral plate mesoderm relationship: part_of UBERON:0005602 {source="EHDAA2-modified"} ! dorsal mesogastrium [Term] id: UBERON:0006294 name: stapes pre-cartilage condensation subset: emapa_ehdaa2 xref: EHDAA:5699 xref: EHDAA2:0001910 xref: EMAPA:17827 xref: OG:0000956 is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_into UBERON:0001687 ! stapes [Term] id: UBERON:0006295 name: sternebral bone pre-cartilage condensation subset: emapa_ehdaa2 xref: EHDAA:9565 xref: EHDAA2:0001912 xref: EMAPA:18345 xref: OG:0000961 is_a: UBERON:0005256 ! implied link automatically realized ! trunk mesenchyme is_a: UBERON:0005866 {source="EHDAA2"} ! pre-cartilage condensation relationship: develops_from UBERON:0006210 {source="EHDAA2"} ! body-wall mesenchyme relationship: part_of UBERON:0000975 ! sternum [Term] id: UBERON:0006296 name: subcardinal vein subset: emapa_ehdaa2 xref: EHDAA:2631 xref: EHDAA2:0001932 xref: EMAPA:16829 xref: ncithesaurus:Subcardinal_Vein xref: OG:0001336 xref: SCTID:308830006 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0004581 ! systemic venous system relationship: part_of UBERON:0004582 ! venous system [Term] id: UBERON:0006297 name: sublingual gland primordium subset: emapa_ehdaa2 xref: EHDAA:7989 xref: EHDAA2:0001935 xref: EMAPA:17752 is_a: UBERON:0001048 ! primordium is_a: UBERON:0005423 ! developing anatomical structure relationship: develops_into UBERON:0001832 ! sublingual gland relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0001044 ! salivary gland [Term] id: UBERON:0006298 name: submandibular gland primordium subset: emapa_ehdaa2 xref: EHDAA:9255 xref: EHDAA2:0001939 xref: EMAPA:17755 is_a: UBERON:0001048 ! primordium is_a: UBERON:0005423 ! developing anatomical structure relationship: develops_into UBERON:0001736 ! submandibular gland relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0001044 ! salivary gland [Term] id: UBERON:0006299 name: superior recess subset: emapa_ehdaa2 xref: EHDAA:2343 xref: EHDAA2:0001958 xref: EMAPA:18049 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0001341 ! lesser sac [Term] id: UBERON:0006300 name: supracardinal vein def: "Either of two veins in the mammalian embryo and various adult lower vertebrate forms located in the thoracic and abdominal regions dorsolateral to and on either side of the descending aorta and giving rise to the azygos and hemiazygos veins and a part of the inferior vena cava[MW]. These veins drain the body wall via the segmental intercostal veins, thus taking over the function of the posterior cardinals[ISBN]" [http://www.merriam-webster.com/medical/supracardinal%20vein, ISBN-10:0443065837 "Human embryology, Larsen"] subset: emapa_ehdaa2 xref: EHDAA:7492 xref: EHDAA2:0001964 xref: EMAPA:16830 xref: ncithesaurus:Supracardinal_Vein xref: SCTID:308829001 is_a: UBERON:0001638 ! vein is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0004581 ! systemic venous system [Term] id: UBERON:0006301 name: telencephalic part of interventricular foramen subset: emapa_ehdaa2 xref: EHDAA:5474 xref: EHDAA2:0001980 xref: EMAPA:16654 xref: EMAPA:16915 xref: OG:0000809 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0002285 ! lateral ventricle [Term] id: UBERON:0006303 name: tracheal diverticulum subset: emapa_ehdaa2 xref: EHDAA2:0002072 xref: EMAPA:16740 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0006304 name: trigeminal V preganglion subset: emapa_ehdaa2 xref: EHDAA:924 xref: EHDAA2:0002089 xref: EMAPA:16663 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0005706 ! central nervous system cranial ganglion [Term] id: UBERON:0006305 name: tunica vasculosa lentis def: "an extensive capillary network, spreading over the posterior and lateral surfaces of the lens of the eye. It disappears shortly after birth." [Wikipedia:Tunica_vasculosa_lentis] subset: emapa_ehdaa2 xref: EHDAA:5705 xref: EHDAA2:0002097 xref: EMAPA:18235 xref: OG:0000978 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0005607 ! hyaloid vascular plexus [Term] id: UBERON:0006306 name: ulna cartilage condensation subset: emapa_ehdaa2 xref: EHDAA:7269 xref: EHDAA2:0002098 xref: EMAPA:18055 xref: OG:0001155 is_a: UBERON:0003327 ! implied link automatically realized ! mesenchyme of forearm is_a: UBERON:0005423 ! developing anatomical structure is_a: UBERON:0005863 ! cartilaginous condensation relationship: develops_into UBERON:0001424 ! ulna relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0003327 ! mesenchyme of forearm [Term] id: UBERON:0006307 name: urogenital membrane comment: During the 7th week the urorectal septum divides the cloacal membrane into a urogenital membrane (ventrally) and an anal membrane (dorsally) [http://www.embryology.ch/anglais/ugenital/genitexterne01.html] subset: emapa_ehdaa2 xref: EHDAA:7011 xref: EHDAA2:0002141 xref: EHDAA2:0004025 xref: EMAPA:17210 xref: EMAPA:17378 xref: OG:0001187 xref: SCTID:172994001 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: develops_from UBERON:0006217 {source="EHDAA2"} ! cloacal membrane relationship: part_of UBERON:0001008 {source="EHDAA2"} ! excretory system relationship: part_of UBERON:0004122 ! genitourinary system [Term] id: UBERON:0006308 name: vagal X nerve trunk subset: emapa_ehdaa2 xref: EHDAA:4659 xref: EHDAA2:0002160 xref: EMAPA:17272 xref: OG:0000736 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0002464 ! nerve trunk relationship: part_of UBERON:0004293 ! parasympathetic nerve [Term] id: UBERON:0006309 name: venous vitelline plexus subset: emapa_ehdaa2 xref: EHDAA:1945 xref: EHDAA2:0002172 xref: EMAPA:17020 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0004581 ! systemic venous system relationship: part_of UBERON:0004582 ! venous system [Term] id: UBERON:0006310 name: vitelline venous plexus subset: emapa_ehdaa2 xref: EHDAA:1945 xref: EHDAA2:0002210 xref: EMAPA:17020 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0004581 ! systemic venous system relationship: part_of UBERON:0004582 ! venous system [Term] id: UBERON:0006311 name: chamber of eyeball def: "Chamber of eyeball[FMA]" [FMA:58071] synonym: "eye chamber" EXACT [MA:0002459] synonym: "eyeball chamber" EXACT [FMA:58071] xref: BTO:0002085 xref: FMA:58071 xref: MA:0002459 xref: ncithesaurus:Chamber_of_the_Eye xref: SCTID:280540004 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0000019 ! camera-type eye [Term] id: UBERON:0006312 name: ocular refractive media xref: MA:0001911 is_a: UBERON:0000463 ! portion of organism substance relationship: part_of UBERON:0000019 ! camera-type eye [Term] id: UBERON:0006314 name: bodily fluid def: "Liquid components of living organisms. includes fluids that are excreted or secreted from the body as well as body water that normally is not." [MESH:A.12.207, Wikipedia:Body_fluid] comment: consider merging with parent class synonym: "body fluid" EXACT [GAID:266] xref: GAID:266 xref: galen:BodyFluid xref: MESH:A.12.207 xref: NIF_GrossAnatomy:birnlex_20 is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0006318 name: orbitalis muscle def: "An orbitalis muscle is a rudimentary nonstriated muscle (smooth muscle) that crosses from the infraorbital groove and sphenomaxillary fissure and intimately united with the periosteum of the orbit. It is often called Muller's muscle. One characteristic of Horner's Syndrome is enophthalmos (retraction of the eyeball into the orbit due to paralysis of the orbitalis muscle that spans the inferior orbital fissure). Its function is eyeball protrusion." [Wikipedia:Orbitalis_muscle] comment: subclass of 'muscle layer' in FMA synonym: "musculus orbitalis" EXACT [FMA:49034, FMA:TA] synonym: "orbital muscle" EXACT [FMA:49034] synonym: "orbital muscle of muller" EXACT [FMA:49034] synonym: "orbitalis" RELATED [Wikipedia:Orbitalis_muscle] synonym: "orbitalis" EXACT [FMA:49034] xref: FMA:49034 xref: MA:0001274 xref: ncithesaurus:Orbitalis_Muscle xref: SCTID:368790005 is_a: UBERON:0003660 ! eyelid muscle is_a: UBERON:0006660 ! muscle layer [Term] id: UBERON:0006319 name: spinal cord reticular nucleus synonym: "spinal reticular nucleus" EXACT [FMA:73909] xref: FMA:73909 xref: MA:0001123 is_a: UBERON:0000125 ! neural nucleus is_a: UBERON:0002020 ! gray matter of neuraxis relationship: part_of UBERON:0002256 ! dorsal horn of spinal cord [Term] id: UBERON:0006320 name: inferior oblique extraocular muscle subset: vertebrate_core synonym: "inferior oblique" EXACT [FMA:49040] synonym: "obliquus inferior" EXACT [FMA:49040] xref: FMA:49040 xref: MA:0001276 xref: OG:0001132 xref: SCTID:181156006 xref: ZFA:0000861 is_a: UBERON:0006532 {source="MA"} ! oblique extraocular muscle [Term] id: UBERON:0006321 name: superior oblique extraocular muscle subset: vertebrate_core synonym: "obliquus superior" EXACT [FMA:49039] synonym: "superior oblique" EXACT [FMA:49039] xref: FMA:49039 xref: MA:0001277 xref: OG:0001131 xref: SCTID:181155005 xref: ZFA:0000738 is_a: UBERON:0006532 {source="MA"} ! oblique extraocular muscle [Term] id: UBERON:0006322 name: inferior rectus extraocular muscle subset: vertebrate_core synonym: "inferior rectus" EXACT [FMA:49036] xref: FMA:49036 xref: MA:0001279 xref: OG:0001130 xref: SCTID:181154009 xref: ZFA:0000457 is_a: UBERON:0006533 {source="MA"} ! rectus extraocular muscle [Term] id: UBERON:0006323 name: superior rectus extraocular muscle subset: vertebrate_core synonym: "superior rectus" EXACT [FMA:49035] xref: FMA:49035 xref: MA:0001282 xref: OG:0001128 xref: SCTID:181153003 xref: ZFA:0000345 is_a: UBERON:0006533 {source="MA"} ! rectus extraocular muscle [Term] id: UBERON:0006325 name: laryngeal intrinsic ligament synonym: "intrinsic ligament of larynx" EXACT [FMA:72058] xref: FMA:72058 xref: MA:0001757 xref: SCTID:279557001 is_a: UBERON:0001743 ! ligament of larynx [Term] id: UBERON:0006326 name: base of arytenoid synonym: "arytenoid cartilage base" EXACT [FMA:55349] synonym: "base of arytenoid" EXACT [FMA:55349] synonym: "base of arytenoid cartilage" EXACT [FMA:55349] xref: FMA:55349 xref: MA:0001761 xref: SCTID:279532006 is_a: UBERON:0001994 ! hyaline cartilage is_a: UBERON:0003406 ! implied link automatically realized ! cartilage of respiratory system is_a: UBERON:0003572 ! implied link automatically realized ! chest connective tissue is_a: UBERON:0003583 ! implied link automatically realized ! larynx connective tissue is_a: UBERON:0004267 ! implied link automatically realized ! back connective tissue is_a: UBERON:0005055 ! implied link automatically realized ! zone of long bone is_a: UBERON:0005174 ! implied link automatically realized ! back organ is_a: UBERON:0005175 ! implied link automatically realized ! chest organ is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001740 ! arytenoid cartilage [Term] id: UBERON:0006327 name: laryngeal extrinsic muscle synonym: "extrinsic muscle of larynx" EXACT [FMA:55225] xref: FMA:55225 xref: MA:0001769 xref: SCTID:244808004 is_a: UBERON:0001568 ! muscle of larynx [Term] id: UBERON:0006328 name: laryngeal intrinsic muscle synonym: "intrinsic muscle of larynx" EXACT [FMA:55226] xref: FMA:55226 xref: MA:0001770 xref: SCTID:244810002 is_a: UBERON:0001568 ! muscle of larynx [Term] id: UBERON:0006329 name: superior pharyngeal constrictor synonym: "constrictor muscle of pharynx superior" EXACT [FMA:46621] synonym: "musculus constrictor pharyngis superior" EXACT [FMA:46621, FMA:TA] synonym: "superior constrictor" EXACT [FMA:46621] synonym: "superior constrictor of pharynx" EXACT [FMA:46621] synonym: "superior constrictor pharyngeus" EXACT [FMA:46621] xref: FMA:46621 xref: MA:0002280 xref: SCTID:244800006 is_a: UBERON:0001569 ! constrictor muscle of pharynx [Term] id: UBERON:0006330 name: anterior lingual gland synonym: "anterior lingual salivary gland" EXACT [FMA:59796] synonym: "lingual salivary gland" EXACT [FMA:59796] xref: FMA:59796 xref: MA:0002701 xref: ncithesaurus:Lingual_Salivary_Gland xref: SCTID:362179003 is_a: UBERON:0001830 ! minor salivary gland relationship: part_of UBERON:0000165 ! mouth [Term] id: UBERON:0006331 name: brainstem nucleus xref: MA:0000821 is_a: UBERON:0002308 ! implied link automatically realized ! nucleus of brain relationship: part_of UBERON:0002298 intersection_of: UBERON:0002308 ! nucleus of brain intersection_of: part_of UBERON:0002298 ! brainstem [Term] id: UBERON:0006332 name: nasal capsule def: "Multi-tissue structure composed of connective tissue that surrounds, the internal portions of the olfactory epithelium[ZFA]. The cartilage surrounding the developing nasal cavity of an embryo[TFD]. Structure that has both respiratory and olfactory functions and lies anterior to the braincase, in the foremost section of the cranium[AAO]." [AAO:0000313, http://dictionary.reference.com/browse/nasal+capsule, ZFA:0005507] comment: todo - check this. split? subset: vertebrate_core xref: AAO:0000313 xref: EMAPA:17852 xref: MA:0000283 xref: ZFA:0005507 is_a: UBERON:0000481 {source="ZFA"} ! multi-tissue structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0000004 {source="MA"} ! olfactory apparatus [Term] id: UBERON:0006333 name: snout def: "Surface structure that is the region of the head in front of and between the orbits, and above the lower jaw. Nares are located on the snout." [ZFA:0005496] subset: vertebrate_core synonym: "muzzle" RELATED [MA:0001910] xref: MA:0001910 xref: SCTID:41127006 xref: ZFA:0005496 is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0001456 ! face [Term] id: UBERON:0006334 name: posterior lateral line def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFA:0000944] comment: check XAO/AAO subset: dubious_grouping synonym: "pll" EXACT [ZFA:0000944] xref: AAO:0011024 xref: EFO:0003595 xref: XAO:0000465 xref: ZFA:0000944 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0002540 {source="XAO"} ! lateral line system [Term] id: UBERON:0006336 name: unspecified xref: XAO:0003003 xref: ZFA:0001093 is_obsolete: true [Term] id: UBERON:0006337 name: distal early tubule def: "Portion of the renal tubule which is just posterior to the proximal straight tubule." [ZFA:0005293] comment: in XAO this is pronephric; in ZFA it is an adult structure. we treat it here as generic. consider placing XAO under proneprhic subclass. check relationship with EDCT. subset: vertebrate_core xref: AAO:0011034 xref: EMAPA:27788 xref: EMAPA:28007 xref: EMAPA:28390 xref: XAO:0000287 xref: ZFA:0005293 is_a: UBERON:0007685 ! region of nephron tubule [Term] id: UBERON:0006338 name: lateral ventricle choroid plexus stroma comment: editors note: definitions should be fixed to use generic stroma class xref: MA:0000963 is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon is_a: UBERON:0005206 ! implied link automatically realized ! choroid plexus stroma relationship: part_of UBERON:0002285 intersection_of: UBERON:0005206 ! choroid plexus stroma intersection_of: part_of UBERON:0002285 ! lateral ventricle relationship: part_of UBERON:0002307 ! choroid plexus of lateral ventricle [Term] id: UBERON:0006339 name: third ventricle choroid plexus stroma xref: MA:0000881 is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon is_a: UBERON:0005206 ! implied link automatically realized ! choroid plexus stroma relationship: part_of UBERON:0002286 intersection_of: UBERON:0005206 ! choroid plexus stroma intersection_of: part_of UBERON:0002286 ! third ventricle relationship: part_of UBERON:0002288 ! choroid plexus of third ventricle [Term] id: UBERON:0006340 name: fourth ventricle choroid plexus stroma xref: MA:0000985 is_a: UBERON:0002946 ! implied link automatically realized ! regional part of cerebellum is_a: UBERON:0005206 ! implied link automatically realized ! choroid plexus stroma relationship: part_of UBERON:0002422 intersection_of: UBERON:0005206 ! choroid plexus stroma intersection_of: part_of UBERON:0002422 ! fourth ventricle relationship: part_of UBERON:0002290 ! choroid plexus of fourth ventricle [Term] id: UBERON:0006341 name: outer renal medulla peritubular capillary xref: MA:0002589 is_a: UBERON:0005272 ! implied link automatically realized ! peritubular capillary relationship: part_of UBERON:0001293 intersection_of: UBERON:0005272 ! peritubular capillary intersection_of: part_of UBERON:0001293 ! outer medulla of kidney [Term] id: UBERON:0006342 name: left hepatic recess xref: EMAPA:18047 xref: MA:0000444 is_a: UBERON:0006442 ! hepatic recess [Term] id: UBERON:0006343 name: right hepatic recess xref: EMAPA:18050 xref: MA:0000450 is_a: UBERON:0006442 ! hepatic recess [Term] id: UBERON:0006345 name: stapedial artery def: "A small artery in the embryo that passes through the ring of the stapes and is later obliterated (in humans)." [http://www.biology-online.org/dictionary/Stapedial_artery] xref: EHDAA2:0001908 xref: EMAPA:17313 xref: MA:0002044 xref: ncithesaurus:Stapedial_Artery xref: SCTID:361518009 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0001637 ! artery is_a: UBERON:0005911 ! implied link automatically realized ! endo-epithelium relationship: develops_from UBERON:0003119 {source="Wikipedia"} ! aortic arch 2 [Term] id: UBERON:0006347 name: communicating artery xref: EMAPA:18598 xref: MA:0001938 xref: ncithesaurus:Communicating_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0006349 name: epigastric artery xref: EMAPA:18750 xref: MA:0001948 xref: MESH:A.07.231.114.330 xref: ncithesaurus:Epigastric_Artery xref: SCTID:261400009 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0006351 name: principal vein of forelimb xref: EMAPA:17018 xref: MA:0002199 is_a: UBERON:0003515 ! implied link automatically realized ! forelimb blood vessel is_a: UBERON:0006443 ! implied link automatically realized ! prinicipal vein of limb relationship: part_of UBERON:0002102 intersection_of: UBERON:0006443 ! prinicipal vein of limb intersection_of: part_of UBERON:0002102 ! forelimb [Term] id: UBERON:0006353 name: principal vein of hindlimb xref: EMAPA:17019 xref: MA:0002200 is_a: UBERON:0003516 ! implied link automatically realized ! hindlimb blood vessel is_a: UBERON:0006443 ! implied link automatically realized ! prinicipal vein of limb relationship: part_of UBERON:0002103 intersection_of: UBERON:0006443 ! prinicipal vein of limb intersection_of: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0006355 name: superior vesical vein xref: EMAPA:18646 xref: MA:0002227 is_a: UBERON:0002460 ! vesical vein [Term] id: UBERON:0006356 name: epigastric vein xref: EMAPA:18759 xref: MA:0002114 xref: ncithesaurus:Epigastric_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0006358 name: vasa hyaloidea propria xref: EMAPA:18236 xref: MA:0001285 is_a: UBERON:0005607 ! hyaloid vascular plexus [Term] id: UBERON:0006359 name: mesoduodenum xref: EMAPA:17183 xref: EMAPA:17198 xref: EMAPA:19082 xref: MA:0001556 is_a: UBERON:0001170 ! mesentery of small intestine [Term] id: UBERON:0006360 name: intermolar eminence xref: EMAPA:18273 xref: EMAPA:18876 xref: MA:0001590 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001723 ! tongue [Term] id: UBERON:0006364 name: ureteric tip xref: EMAPA:27605 xref: EMAPA:27625 xref: EMAPA:27694 xref: EMAPA:27749 xref: MA:0002601 is_a: UBERON:0001232 ! collecting duct of renal tubule [Term] id: UBERON:0006373 name: perihilar interstitium xref: EMAPA:28083 xref: MA:0002618 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0001224 {source="MA"} ! renal pelvis relationship: part_of UBERON:0005215 {source="MA"} ! kidney interstitium [Term] id: UBERON:0006374 name: part of afferent arteriole forming the juxtaglomerular complex synonym: "renin-producing cells" RELATED [MA:0002580] xref: EMAPA:28269 xref: MA:0002580 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0002303 ! juxtaglomerular apparatus relationship: part_of UBERON:0004639 ! afferent arteriole [Term] id: UBERON:0006376 name: premacula segment of distal straight tubule def: "." [https://sourceforge.net/tracker/?func=detail&aid=3123600&group_id=76834&atid=1205376, PMID:14595018] synonym: "kidney medulla loop of Henle ascending limb thick segment" EXACT [MA:th] synonym: "medullary thick ascending limb of Henle's loop" EXACT [MA:th] synonym: "renal medulla loop of Henle ascending limb thick segment" EXACT [MA:th] synonym: "renal medulla thick ascending limb" EXACT [MA:th] xref: EMAPA:28331 xref: EMAPA:29683 xref: EMAPA:31379 xref: MA:0002628 is_a: UBERON:0007685 ! region of nephron tubule is_a: UBERON:0008408 ! implied link automatically realized ! distal tubular epithelium relationship: part_of UBERON:0001291 {source="MA"} ! thick ascending limb of loop of Henle relationship: part_of UBERON:0006541 {source="MA"} ! outer medulla inner stripe loop of henle relationship: part_of UBERON:0006542 {source="MA"} ! outer medulla outer stripe loop of henle [Term] id: UBERON:0006377 name: remnant of Rathke's pouch synonym: "hypophyseal cleft" RELATED [MA:0000857] xref: EMAPA:17518 xref: MA:0000857 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: develops_from UBERON:0005356 ! Rathke's pouch relationship: part_of UBERON:0002196 ! adenohypophysis [Term] id: UBERON:0006378 name: vibrissa def: "specialized hairs (or, in certain bird species, specialized feathers) usually employed for tactile sensation. Vibrissae hair grow around the nostrils, above the lips, and on other parts of the face of most mammals, as well as on the forelegs and feet of some animals. Vibrissae are usually thicker and stiffer than other types of hair. Vibrissae consist of inert material and contain no nerves, but do have special sensory cells associated with them. Vibrissae are different from other hairs mainly because they are implanted in a special follicle sealed by a capsule of blood, called a blood sinus. Touching a vibrissa causes it to bend, and the blood in the sinus is pushed to one side or the other. The blood amplifies the movement and allows the mechanoreceptors at the base of the vibrissa to detect extremely small deflections[WP]." [https://sourceforge.net/tracker/?func=detail&aid=3213510&group_id=76834&atid=1205376, Wikipedia:Whiskers] comment: Editor note: add distinct subclasses for whisker, hair of nose, etc. // Note that the FMA class should probably NOT be grouped here - fix in later release synonym: "hair of nose" NARROW [FMA:53670] synonym: "hair of vestibular part of nose" NARROW [FMA:53670] synonym: "nose hair" NARROW [FMA:53670] synonym: "whisker" NARROW [MA:0000163] xref: BTO:0003488 xref: EMAPA:17529 xref: FMA:53670 xref: http://eulep.pdn.cam.ac.uk/~skinbase/Anatomic_hair_types/FOOT_VIBRISSAE_ANNOTATED.jpg xref: MA:0000163 xref: MESH:A.13.950 is_a: UBERON:0001037 {source="FMA"} ! strand of hair relationship: part_of UBERON:0002416 ! integumental system [Term] id: UBERON:0006428 name: basisphenoid bone def: "Endochondral ossification of the ventromedial portion of the braincase." [AAO:0000040] synonym: "basisphenoid" EXACT [AAO:0000040] xref: AAO:0000040 xref: EMAPA:18706 xref: MA:0001463 xref: SCTID:95945003 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0003465 ! chondrocranium bone relationship: develops_from UBERON:0009194 {source="cjm"} ! basisphenoid cartilage condenstion relationship: part_of UBERON:0001677 ! sphenoid bone [Term] id: UBERON:0006430 name: xiphoid cartilage subset: uberon_slim synonym: "cartilage of xiphoid process" EXACT [FMA:32574] synonym: "ensiform cartilage" RELATED [Wikipedia:Xiphoid_process] synonym: "xiphoid cartilage" EXACT [] synonym: "xiphoid process cartilage" EXACT [FMA:32574] xref: AAO:0000940 xref: EMAPA:18725 xref: FMA:32574 xref: MA:0001884 is_a: UBERON:0000398 ! sternal cartilage is_a: UBERON:0002236 ! implied link automatically realized ! costal cartilage relationship: part_of UBERON:0002207 intersection_of: UBERON:0002236 ! costal cartilage intersection_of: part_of UBERON:0002207 ! xiphoid process [Term] id: UBERON:0006431 name: xiphoid process bone synonym: "bone tissue of xiphoid process" EXACT [FMA:32577] synonym: "xiphoid bone" RELATED [Wikipedia:Xiphoid_process] xref: FMA:32577 xref: GAID:248 is_a: UBERON:0002481 ! implied link automatically realized ! bone tissue is_a: UBERON:0003837 ! implied link automatically realized ! thoracic segment connective tissue relationship: part_of UBERON:0002207 intersection_of: UBERON:0002481 ! bone tissue intersection_of: part_of UBERON:0002207 ! xiphoid process [Term] id: UBERON:0006435 name: os penis def: "a bone found in the penis of most mammals. It is absent in humans, but present in other primates, such as the closely-related chimpanzee. The bone aids in sexual intercourse[WP]." [Wikipedia:Baculum] synonym: "baculum" EXACT [Wikipedia:Baculum] synonym: "penile bone" EXACT [Wikipedia:Baculum] synonym: "penis bone" EXACT [Wikipedia:Baculum] xref: EMAPA:29769 xref: MA:0000406 xref: SCTID:27962002 is_a: UBERON:0007719 ! os penis/os clitoris relationship: part_of UBERON:0000989 intersection_of: UBERON:0001474 ! bone intersection_of: part_of UBERON:0000989 ! penis [Term] id: UBERON:0006436 name: principal artery to forelimb xref: EMAPA:16811 xref: MA:0002024 is_a: UBERON:0007718 ! principal artery to limb [Term] id: UBERON:0006438 name: principal artery to hindlimb xref: EMAPA:16812 xref: MA:0002025 is_a: UBERON:0007718 ! principal artery to limb [Term] id: UBERON:0006440 name: os clitoris synonym: "baubellum" EXACT [Wikipedia:Baculum] synonym: "os clitoridis" EXACT [Wikipedia:Baculum] xref: EMAPA:30823 xref: MA:0000387 is_a: UBERON:0007719 ! os penis/os clitoris relationship: part_of UBERON:0002411 intersection_of: UBERON:0001474 ! bone intersection_of: part_of UBERON:0002411 ! clitoris [Term] id: UBERON:0006442 name: hepatic recess is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0001179 ! peritoneal cavity [Term] id: UBERON:0006443 name: prinicipal vein of limb is_a: UBERON:0001638 ! vein is_a: UBERON:0003514 ! implied link automatically realized ! limb blood vessel relationship: part_of UBERON:0002101 ! limb [Term] id: UBERON:0006444 name: annulus fibrosus def: "A ring of fibrous or fibrocartilaginous tissue (as of an intervertebral disk or surrounding an orifice of the heart)." [BTO:0003627] synonym: "anulus fibrosus" EXACT [FMA:76704] synonym: "fibrous ring" RELATED [BTO:0003627] xref: BTO:0003627 xref: FMA:76704 is_a: UBERON:0001995 ! fibrocartilage [Term] id: UBERON:0006445 name: caudal middle frontal gyrus def: "Component of the middle frontal gyrus. The rostral boundary of the middle frontal gyrus was the rostral extent of the middle frontal gyrus whereas the caudal boundary was the precentral gyrus. The medial and lateral boundaries were designated as the superior frontal sulcus and the inferior frontal sulcus respectively (Christine Fennema-Notestine)." [NIF_GrossAnatomy:birnlex_1083] synonym: "caudal middle frontal gyrus" EXACT [NIF_GrossAnatomy:birnlex_1083] synonym: "posterior part of middle frontal gyrus" EXACT [FMA:70688] xref: FMA:70688 xref: NIF_GrossAnatomy:birnlex_1083 is_a: UBERON:0002791 ! regional part of telencephalon is_a: UBERON:0003022 ! lobe parts of cerebral cortex relationship: part_of UBERON:0002702 ! middle frontal gyrus [Term] id: UBERON:0006446 name: rostral middle frontal gyrus def: "Component of the middle frontal gyrus The rostral boundary is the first appearance of the superior frontal sulcus whereas the caudal boundary is the middle frontal gyrus. The medial and lateral boundaries are the superior frontal sulcus and the inferior frontal sulcus respectively (Christine Fennema-Notestine)." [NIF_GrossAnatomy:birnlex_1090] synonym: "anterior part of middle frontal gyrus" EXACT [FMA:70687] synonym: "rostral middle frontal gyrus" EXACT [NIF_GrossAnatomy:birnlex_1090] xref: FMA:70687 xref: NIF_GrossAnatomy:birnlex_1090 is_a: UBERON:0002791 ! regional part of telencephalon is_a: UBERON:0003022 ! lobe parts of cerebral cortex relationship: part_of UBERON:0002702 ! middle frontal gyrus [Term] id: UBERON:0006447 name: fifth lumbar spinal cord segment subset: defined_by_ordinal_series synonym: "fifth lumbar spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1251] synonym: "L5 segment" EXACT [FMA:71191] synonym: "L5 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1251] xref: FMA:71191 xref: NIF_GrossAnatomy:birnlex_1251 xref: SCTID:278775008 is_a: UBERON:0007716 ! lumbar subsegment of spinal cord [Term] id: UBERON:0006448 name: first lumbar spinal cord segment subset: defined_by_ordinal_series synonym: "first lumbar spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1336] synonym: "L1 segment" EXACT [FMA:71187] synonym: "L1 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1336] xref: FMA:71187 xref: NIF_GrossAnatomy:birnlex_1336 xref: SCTID:278776009 is_a: UBERON:0007716 ! lumbar subsegment of spinal cord [Term] id: UBERON:0006449 name: third lumbar spinal cord segment subset: defined_by_ordinal_series synonym: "L3 segment" EXACT [FMA:71189] synonym: "L3 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1340] synonym: "third lumbar spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1340] xref: FMA:71189 xref: NIF_GrossAnatomy:birnlex_1340 xref: SCTID:278778005 is_a: UBERON:0007716 ! lumbar subsegment of spinal cord [Term] id: UBERON:0006450 name: second lumbar spinal cord segment subset: defined_by_ordinal_series synonym: "l2 segment" EXACT [FMA:71188] synonym: "L2 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1345] synonym: "second lumbar spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1345] xref: FMA:71188 xref: NIF_GrossAnatomy:birnlex_1345 xref: SCTID:278777000 is_a: UBERON:0007716 ! lumbar subsegment of spinal cord [Term] id: UBERON:0006451 name: fourth lumbar spinal cord segment subset: defined_by_ordinal_series synonym: "L4 segment" EXACT [FMA:71190] synonym: "L4 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1352] xref: FMA:71190 xref: NIF_GrossAnatomy:birnlex_1352 xref: SCTID:278779002 is_a: UBERON:0007716 ! lumbar subsegment of spinal cord [Term] id: UBERON:0006452 name: fourth thoracic spinal cord segment subset: defined_by_ordinal_series synonym: "T4 segment" EXACT [FMA:71170] synonym: "T4 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1378] xref: FMA:71170 xref: NIF_GrossAnatomy:birnlex_1378 xref: SCTID:278766006 is_a: UBERON:0007715 ! thoracic subsegment of spinal cord [Term] id: UBERON:0006453 name: fifth thoracic spinal cord segment subset: defined_by_ordinal_series synonym: "fifth thoracic spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1383] synonym: "t5 segment" EXACT [FMA:71171] synonym: "T5 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1383] xref: FMA:71171 xref: NIF_GrossAnatomy:birnlex_1383 xref: SCTID:278767002 is_a: UBERON:0007715 ! thoracic subsegment of spinal cord [Term] id: UBERON:0006454 name: sixth thoracic spinal cord segment subset: defined_by_ordinal_series synonym: "sixth thoracic spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1387] synonym: "t6 segment" EXACT [FMA:71172] synonym: "T6 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1387] xref: FMA:71172 xref: NIF_GrossAnatomy:birnlex_1387 xref: SCTID:278768007 is_a: UBERON:0007715 ! thoracic subsegment of spinal cord [Term] id: UBERON:0006455 name: seventh thoracic spinal cord segment subset: defined_by_ordinal_series synonym: "seventh thoracic spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1392] synonym: "t7 segment" EXACT [FMA:71173] synonym: "T7 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1392] xref: FMA:71173 xref: NIF_GrossAnatomy:birnlex_1392 xref: SCTID:278769004 is_a: UBERON:0007715 ! thoracic subsegment of spinal cord [Term] id: UBERON:0006456 name: eighth thoracic spinal cord segment subset: defined_by_ordinal_series synonym: "eighth thoracic spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1398] synonym: "t8 segment" EXACT [FMA:71174] synonym: "T8 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1398] xref: FMA:71174 xref: NIF_GrossAnatomy:birnlex_1398 xref: SCTID:278770003 is_a: UBERON:0007715 ! thoracic subsegment of spinal cord [Term] id: UBERON:0006457 name: first thoracic spinal cord segment subset: defined_by_ordinal_series synonym: "first thoracic spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1452] synonym: "t1 segment" EXACT [FMA:62421] synonym: "T1 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1452] xref: FMA:62421 xref: NIF_GrossAnatomy:birnlex_1452 xref: SCTID:278762008 is_a: UBERON:0007715 ! thoracic subsegment of spinal cord [Term] id: UBERON:0006458 name: second thoracic spinal cord segment subset: defined_by_ordinal_series synonym: "second thoracic spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1454] synonym: "t2 segment" EXACT [FMA:62422] synonym: "T2 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1454] xref: FMA:62422 xref: NIF_GrossAnatomy:birnlex_1454 xref: SCTID:278763003 is_a: UBERON:0007715 ! thoracic subsegment of spinal cord [Term] id: UBERON:0006459 name: third thoracic spinal cord segment subset: defined_by_ordinal_series synonym: "t3 segment" EXACT [FMA:71169] synonym: "T3 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1458] synonym: "third thoracic spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1458] xref: FMA:71169 xref: NIF_GrossAnatomy:birnlex_1458 xref: SCTID:278764009 is_a: UBERON:0007715 ! thoracic subsegment of spinal cord [Term] id: UBERON:0006460 name: first sacral spinal cord segment subset: defined_by_ordinal_series synonym: "first sacral spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1532] synonym: "S1 segment" EXACT [FMA:256625] synonym: "S1 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1532] xref: FMA:256625 xref: NIF_GrossAnatomy:birnlex_1532 xref: SCTID:278780004 is_a: UBERON:0007717 ! sacral subsegment of spinal cord [Term] id: UBERON:0006461 name: second sacral spinal cord segment subset: defined_by_ordinal_series synonym: "S2 segment" EXACT [FMA:256627] synonym: "S2 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1539] synonym: "second sacral spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1539] xref: FMA:256627 xref: NIF_GrossAnatomy:birnlex_1539 xref: SCTID:278781000 is_a: UBERON:0007717 ! sacral subsegment of spinal cord [Term] id: UBERON:0006462 name: third sacral spinal cord segment subset: defined_by_ordinal_series synonym: "S3 segment" EXACT [FMA:256629] synonym: "S3 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1544] synonym: "third sacral spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1544] xref: FMA:256629 xref: NIF_GrossAnatomy:birnlex_1544 xref: SCTID:278782007 is_a: UBERON:0007717 ! sacral subsegment of spinal cord [Term] id: UBERON:0006463 name: fourth sacral spinal cord segment subset: defined_by_ordinal_series synonym: "S4 segment" EXACT [FMA:256631] synonym: "S4 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1548] xref: FMA:256631 xref: NIF_GrossAnatomy:birnlex_1548 xref: SCTID:278783002 is_a: UBERON:0007717 ! sacral subsegment of spinal cord [Term] id: UBERON:0006464 name: fifth sacral spinal cord segment subset: defined_by_ordinal_series synonym: "fifth sacral spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1553] synonym: "S5 segment" EXACT [FMA:256633] synonym: "S5 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1553] xref: FMA:256633 xref: NIF_GrossAnatomy:birnlex_1553 xref: SCTID:278784008 is_a: UBERON:0007717 ! sacral subsegment of spinal cord [Term] id: UBERON:0006465 name: ninth thoracic spinal cord segment subset: defined_by_ordinal_series synonym: "ninth thoracic spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1584] synonym: "t9 segment" EXACT [FMA:71175] synonym: "T9 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1584] xref: FMA:71175 xref: NIF_GrossAnatomy:birnlex_1584 xref: SCTID:278771004 is_a: UBERON:0007715 ! thoracic subsegment of spinal cord [Term] id: UBERON:0006466 name: tenth thoracic spinal cord segment subset: defined_by_ordinal_series synonym: "t10 segment" EXACT [FMA:71176] synonym: "T10 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1591] synonym: "tenth thoracic spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1591] xref: FMA:71176 xref: NIF_GrossAnatomy:birnlex_1591 xref: SCTID:278772006 is_a: UBERON:0007715 ! thoracic subsegment of spinal cord [Term] id: UBERON:0006467 name: eleventh thoracic spinal cord segment subset: defined_by_ordinal_series synonym: "eleventh thoracic spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1596] synonym: "t11 segment" EXACT [FMA:71177] synonym: "T11 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1596] xref: FMA:71177 xref: NIF_GrossAnatomy:birnlex_1596 xref: SCTID:278773001 is_a: UBERON:0007715 ! thoracic subsegment of spinal cord [Term] id: UBERON:0006468 name: twelfth thoracic spinal cord segment subset: defined_by_ordinal_series synonym: "t12 segment" EXACT [FMA:71178] synonym: "T12 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1598] synonym: "twelfth thoracic spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1598] xref: FMA:71178 xref: NIF_GrossAnatomy:birnlex_1598 xref: SCTID:278774007 is_a: UBERON:0007715 ! thoracic subsegment of spinal cord [Term] id: UBERON:0006469 name: first cervical spinal cord segment subset: defined_by_ordinal_series synonym: "C1 segment" EXACT [FMA:71179] synonym: "C1 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1694] synonym: "first cervical spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1694] xref: FMA:71179 xref: NIF_GrossAnatomy:birnlex_1694 xref: SCTID:278754000 is_a: UBERON:0007714 ! cervical subsegment of spinal cord [Term] id: UBERON:0006470 name: eighth cervical spinal cord segment subset: defined_by_ordinal_series synonym: "C8 segment" EXACT [FMA:71186] synonym: "C8 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1696] synonym: "eighth cervical spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1696] xref: FMA:71186 xref: NIF_GrossAnatomy:birnlex_1696 xref: SCTID:278761001 is_a: UBERON:0007714 ! cervical subsegment of spinal cord [Term] id: UBERON:0006471 name: brodmann (1909) area 5 def: "Brodmann area 5 is one of Brodmann's cytologically defined regions of the brain. It is involved in somatosensory processing and association." [Wikipedia:Brodmann_area_5] synonym: "area 5 of Brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1736] synonym: "Area praeparietalis" EXACT [NIF_GrossAnatomy:birnlex_1736] synonym: "B09-5" EXACT [NIF_GrossAnatomy:birnlex_1736] synonym: "brodmann (1909) area 5" EXACT [NIF_GrossAnatomy:birnlex_1736] synonym: "brodmann area 5" EXACT [FMA:68601] synonym: "Brodmann area 5, preparietal" EXACT [NIF_GrossAnatomy:birnlex_1736] synonym: "preparietal area 5" RELATED [Wikipedia:Brodmann_area_5] synonym: "preparietal area 5" EXACT [FMA:68601] synonym: "secondary somatosensory cortex" RELATED [Wikipedia:Brodmann_area_5] xref: FMA:68601 xref: NIF_GrossAnatomy:birnlex_1736 xref: SCTID:384764008 is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0006472 name: brodmann (1909) area 6 def: "Brodmann area 6, or BA6, is part of the frontal cortex in the human brain. Situated just anterior to the primary motor cortex, it is composed of the premotor cortex and, medially, the supplementary motor area, or SMA. This large area of the frontal cortex is believed to play a role in the planning of complex, coordinated movements. Brodmann area 6 is also called agranular frontal area 6 in humans because it lacks an internal granular cortical layer (layer IV). It is a subdivision of the cytoarchitecturally defined precentral region of cerebral cortex. In the human brain, it is located on the portions of the precentral gyrus that are not occupied by the gigantopyramidal area 4; furthermore, BA6 extends onto the caudal portions of the superior frontal and middle frontal gyri. It extends from the cingulate sulcus on the medial aspect of the hemisphere to the lateral sulcus on the lateral aspect. It is bounded rostrally by the granular frontal region and caudally by the gigantopyramidal area 4 (Brodmann, 1909)." [Wikipedia:Brodmann_area_6] synonym: "agranular frontal area 6" RELATED [Wikipedia:Brodmann_area_6] synonym: "agranular frontal area 6" EXACT [FMA:68602] synonym: "area 6 of brodmann" EXACT [FMA:68602] synonym: "area 6 of Brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1737] synonym: "Area frontalis agranularis" EXACT [NIF_GrossAnatomy:birnlex_1737] synonym: "B09-6" EXACT [NIF_GrossAnatomy:birnlex_1737] synonym: "brodmann (1909) area 6" EXACT [NIF_GrossAnatomy:birnlex_1737] synonym: "brodmann area 6" EXACT [FMA:68602] synonym: "Brodmann area 6, agranular frontal" EXACT [NIF_GrossAnatomy:birnlex_1737] synonym: "frontal belt" EXACT [FMA:68602] xref: FMA:68602 xref: NIF_GrossAnatomy:birnlex_1737 xref: SCTID:384765009 is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0006473 name: brodmann (1909) area 18 def: "." [NIF_GrossAnatomy:birnlex_1749] synonym: "area 18 of brodmann" EXACT [FMA:68615] synonym: "area 18 of Brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1749] synonym: "Area parastriata" EXACT [NIF_GrossAnatomy:birnlex_1749] synonym: "B09-18" EXACT [NIF_GrossAnatomy:birnlex_1749] synonym: "brodmann (1909) area 18" EXACT [NIF_GrossAnatomy:birnlex_1749] synonym: "brodmann area 18" EXACT [FMA:68615] synonym: "Brodmann area 18, parastriate" EXACT [NIF_GrossAnatomy:birnlex_1749] synonym: "brodmann's area 18" EXACT [FMA:68615] synonym: "parastriate area 18" EXACT [FMA:68615] synonym: "secondary visual area" EXACT [FMA:68615] synonym: "visual area ii" EXACT [FMA:68615] xref: FMA:68615 xref: NIF_GrossAnatomy:birnlex_1749 xref: SCTID:384773000 is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0006474 name: brodmann (1909) area 30 synonym: "agranular retrolimbic area 30" EXACT [FMA:68627] synonym: "area 30 of brodmann" EXACT [FMA:68627] synonym: "area 30 of Brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1764] synonym: "Area retrolimbica agranularis" EXACT [NIF_GrossAnatomy:birnlex_1764] synonym: "B09-30" EXACT [NIF_GrossAnatomy:birnlex_1764] synonym: "brodmann (1909) area 30" EXACT [NIF_GrossAnatomy:birnlex_1764] synonym: "brodmann area 30" EXACT [FMA:68627] synonym: "Brodmann area 30, agranular retrolimbic" EXACT [NIF_GrossAnatomy:birnlex_1764] synonym: "brodmann's area 30" EXACT [FMA:68627] xref: FMA:68627 xref: NIF_GrossAnatomy:birnlex_1764 xref: SCTID:384784007 is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0006475 name: brodmann (1909) area 31 synonym: "area 31 of brodmann" EXACT [FMA:68628] synonym: "area 31 of Brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1765] synonym: "Area cingularis posterior dorsalis" EXACT [NIF_GrossAnatomy:birnlex_1765] synonym: "B09-31" EXACT [NIF_GrossAnatomy:birnlex_1765] synonym: "brodmann (1909) area 31" EXACT [NIF_GrossAnatomy:birnlex_1765] synonym: "brodmann area 31" EXACT [FMA:68628] synonym: "Brodmann area 31, dorsal posterior cingulate" EXACT [NIF_GrossAnatomy:birnlex_1765] synonym: "brodmann's area 31" EXACT [FMA:68628] synonym: "cinguloparietal transition area" EXACT [FMA:68628] synonym: "dorsal posterior cingulate area 31" EXACT [FMA:68628] xref: FMA:68628 xref: NIF_GrossAnatomy:birnlex_1765 xref: SCTID:384785008 is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0006476 name: brodmann (1909) area 33 synonym: "area 33 of brodmann" EXACT [FMA:68630] synonym: "area 33 of Brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1766] synonym: "Area praegenualis" EXACT [NIF_GrossAnatomy:birnlex_1766] synonym: "B09-33" EXACT [NIF_GrossAnatomy:birnlex_1766] synonym: "brodmann (1909) area 33" EXACT [NIF_GrossAnatomy:birnlex_1766] synonym: "brodmann area 33" EXACT [FMA:68630] synonym: "Brodmann area 33, pregenual" EXACT [NIF_GrossAnatomy:birnlex_1766] synonym: "brodmann's area 33" EXACT [FMA:68630] synonym: "pregenual area 33" EXACT [FMA:68630] xref: FMA:68630 xref: NIF_GrossAnatomy:birnlex_1766 xref: SCTID:384788005 is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0006477 name: brodmann (1909) area 34 synonym: "area 34 of brodmann" EXACT [FMA:68631] synonym: "area 34 of Brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1767] synonym: "Area entorhinalis dorsalis" EXACT [NIF_GrossAnatomy:birnlex_1767] synonym: "B09-34" EXACT [NIF_GrossAnatomy:birnlex_1767] synonym: "brodmann (1909) area 34" EXACT [NIF_GrossAnatomy:birnlex_1767] synonym: "brodmann area 34" EXACT [FMA:68631] synonym: "Brodmann area 34, dorsal entorhinal" EXACT [NIF_GrossAnatomy:birnlex_1767] synonym: "dorsal entorhinal area 34" EXACT [FMA:68631] xref: FMA:68631 xref: NIF_GrossAnatomy:birnlex_1767 xref: SCTID:384789002 is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0006478 name: brodmann (1909) area 37 synonym: "area 37 0f brodmann" EXACT [FMA:68634] synonym: "area 37 of Brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1770] synonym: "Area occipitotemporalis" EXACT [NIF_GrossAnatomy:birnlex_1770] synonym: "B09-37" EXACT [NIF_GrossAnatomy:birnlex_1770] synonym: "brodmann (1909) area 37" EXACT [NIF_GrossAnatomy:birnlex_1770] synonym: "brodmann area 37" EXACT [FMA:68634] synonym: "Brodmann area 37, occipitotemporal" EXACT [NIF_GrossAnatomy:birnlex_1770] synonym: "occipitotemporal area 37" EXACT [FMA:68634] xref: FMA:68634 xref: NIF_GrossAnatomy:birnlex_1770 xref: SCTID:384792003 is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0006479 name: brodmann (1909) area 38 synonym: "area 38 of brodmann" EXACT [FMA:68635] synonym: "area 38 of Brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1771] synonym: "Area temporopolaris" EXACT [NIF_GrossAnatomy:birnlex_1771] synonym: "B09-38" EXACT [NIF_GrossAnatomy:birnlex_1771] synonym: "brodmann (1909) area 38" EXACT [NIF_GrossAnatomy:birnlex_1771] synonym: "brodmann area 38" EXACT [FMA:68635] synonym: "Brodmann area 38, temporopolar" EXACT [NIF_GrossAnatomy:birnlex_1771] synonym: "temporopolar area 38" EXACT [FMA:68635] xref: FMA:68635 xref: NIF_GrossAnatomy:birnlex_1771 xref: SCTID:384793008 is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0006480 name: brodmann (1909) area 39 synonym: "angular area 39" EXACT [FMA:68636] synonym: "area 39 of brodmann" EXACT [FMA:68636] synonym: "area 39 of Brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1772] synonym: "Area angularis" EXACT [NIF_GrossAnatomy:birnlex_1772] synonym: "B09-39" EXACT [NIF_GrossAnatomy:birnlex_1772] synonym: "brodmann (1909) area 39" EXACT [NIF_GrossAnatomy:birnlex_1772] synonym: "brodmann area 39" EXACT [FMA:68636] synonym: "Brodmann area 39, angular" EXACT [NIF_GrossAnatomy:birnlex_1772] xref: FMA:68636 xref: NIF_GrossAnatomy:birnlex_1772 xref: SCTID:384794002 is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0006481 name: brodmann (1909) area 44 synonym: "area 44 of brodmann" EXACT [FMA:68641] synonym: "area 44 of Brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1776] synonym: "Area opercularis" EXACT [NIF_GrossAnatomy:birnlex_1776] synonym: "B09-44" EXACT [NIF_GrossAnatomy:birnlex_1776] synonym: "brodmann (1909) area 44" EXACT [NIF_GrossAnatomy:birnlex_1776] synonym: "brodmann area 44" EXACT [FMA:68641] synonym: "Brodmann area 44, opercular" EXACT [NIF_GrossAnatomy:birnlex_1776] synonym: "opercular area 44" EXACT [FMA:68641] xref: FMA:68641 xref: NIF_GrossAnatomy:birnlex_1776 xref: SCTID:384803008 is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0006482 name: brodmann (1909) area 45 synonym: "area 45 of brodmann" EXACT [FMA:68642] synonym: "area 45 of Brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1777] synonym: "Area triangularis" EXACT [NIF_GrossAnatomy:birnlex_1777] synonym: "B09-45" EXACT [NIF_GrossAnatomy:birnlex_1777] synonym: "brodmann (1909) area 45" EXACT [NIF_GrossAnatomy:birnlex_1777] synonym: "brodmann area 45" EXACT [FMA:68642] synonym: "Brodmann area 45, triangular" EXACT [NIF_GrossAnatomy:birnlex_1777] synonym: "triangular area 45" EXACT [FMA:68642] xref: FMA:68642 xref: NIF_GrossAnatomy:birnlex_1777 xref: SCTID:384805001 is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0006483 name: brodmann (1909) area 46 def: "Brodmann area 46, or BA46, is part of the frontal cortex in the human brain. It is between BA10 and BA45. BA46 is known as middle frontal area 46. In the human it occupies approximately the middle third of the middle frontal gyrus and the most rostral portion of the inferior frontal gyrus. Brodmann area 46 roughly corresponds with the dorsolateral prefrontal cortex (DLPFC), although the borders of area 46 are based on cytoarchitecture rather than function. The DLPFC also encompasses part of granular frontal area 9, directly adjacent on the dorsal surface of the cortex. Cytoarchitecturally, BA46 is bounded dorsally by the granular frontal area 9, rostroventrally by the frontopolar area 10 and caudally by the triangular area 45 (Brodmann-1909). There is some discrepancy between the extent of BA8 (Brodmann-1905) and the same area as described by Walker (1940)" [Wikipedia:Brodmann_area_46] synonym: "area 46 of brodmann" EXACT [FMA:68643] synonym: "area 46 of Brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1778] synonym: "Area frontalis media" EXACT [NIF_GrossAnatomy:birnlex_1778] synonym: "B09-46" EXACT [NIF_GrossAnatomy:birnlex_1778] synonym: "brodmann (1909) area 46" EXACT [NIF_GrossAnatomy:birnlex_1778] synonym: "brodmann area 46" EXACT [FMA:68643] synonym: "Brodmann area 46, middle frontal" EXACT [NIF_GrossAnatomy:birnlex_1778] synonym: "middle frontal area 46" RELATED [Wikipedia:Brodmann_area_46] synonym: "middle frontal area 46" EXACT [FMA:68643] xref: FMA:68643 xref: NIF_GrossAnatomy:birnlex_1778 xref: SCTID:384806000 is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0006484 name: brodmann (1909) area 47 synonym: "area 47 of brodmann" EXACT [FMA:68644] synonym: "area 47 of Brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1779] synonym: "Area orbitalis" EXACT [NIF_GrossAnatomy:birnlex_1779] synonym: "B09-47" EXACT [NIF_GrossAnatomy:birnlex_1779] synonym: "brodmann (1909) area 47" EXACT [NIF_GrossAnatomy:birnlex_1779] synonym: "brodmann area 47" EXACT [FMA:68644] synonym: "Brodmann area 47, orbital" EXACT [NIF_GrossAnatomy:birnlex_1779] synonym: "orbital area 47" EXACT [FMA:68644] xref: FMA:68644 xref: NIF_GrossAnatomy:birnlex_1779 xref: SCTID:384807009 is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0006485 name: brodmann (1909) area 48 synonym: "area 48 of brodmann" EXACT [FMA:81151] synonym: "Area retrosubicularis" EXACT [NIF_GrossAnatomy:birnlex_1791] synonym: "B09-48" EXACT [NIF_GrossAnatomy:birnlex_1791] synonym: "brodmann (1909) area 48" EXACT [NIF_GrossAnatomy:birnlex_1791] synonym: "brodmann area 48" EXACT [FMA:81151] synonym: "Brodmann area 48, retrosubicular" EXACT [NIF_GrossAnatomy:birnlex_1791] synonym: "brodmann's area 48" EXACT [FMA:81151] synonym: "retrosubicular area 48" EXACT [FMA:81151] xref: FMA:81151 xref: NIF_GrossAnatomy:birnlex_1791 xref: SCTID:384808004 is_a: UBERON:0002619 ! regional part of cerebral cortex [Term] id: UBERON:0006486 name: brodmann (1909) area 52 synonym: "area 52 of brodmann" EXACT [FMA:81153] synonym: "Area parainsularis" EXACT [NIF_GrossAnatomy:birnlex_1792] synonym: "B09-52" EXACT [NIF_GrossAnatomy:birnlex_1792] synonym: "brodmann (1909) area 52" EXACT [NIF_GrossAnatomy:birnlex_1792] synonym: "brodmann area 52" EXACT [FMA:81153] synonym: "Brodmann area 52, parainsular" EXACT [NIF_GrossAnatomy:birnlex_1792] synonym: "parainsular area 52" EXACT [FMA:81153] xref: FMA:81153 xref: NIF_GrossAnatomy:birnlex_1792 xref: SCTID:384809007 is_a: UBERON:0002619 ! regional part of cerebral cortex [Term] id: UBERON:0006487 name: hadjikhani et al. (1998) visuotopic area v2d synonym: "hadjikhani et al. (1998) visuotopic area v2d" EXACT [NIF_GrossAnatomy:birnlex_4055] xref: NIF_GrossAnatomy:birnlex_4055 is_a: UBERON:0003022 ! lobe parts of cerebral cortex [Term] id: UBERON:0006488 name: third cervical spinal cord segment subset: defined_by_ordinal_series synonym: "C3 segment" EXACT [FMA:71181] synonym: "C3 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_744] synonym: "third cervical spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_744] xref: FMA:71181 xref: NIF_GrossAnatomy:birnlex_744 xref: SCTID:278756003 is_a: UBERON:0007714 ! cervical subsegment of spinal cord [Term] id: UBERON:0006489 name: second cervical spinal cord segment subset: defined_by_ordinal_series synonym: "C2 segment" EXACT [FMA:71180] synonym: "C2 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_752] synonym: "second cervical spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_752] xref: FMA:71180 xref: NIF_GrossAnatomy:birnlex_752 xref: SCTID:278755004 is_a: UBERON:0007714 ! cervical subsegment of spinal cord [Term] id: UBERON:0006490 name: fourth cervical spinal cord segment subset: defined_by_ordinal_series synonym: "C4 segment" EXACT [FMA:71182] synonym: "C4 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_753] synonym: "forth cervical spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_753] xref: FMA:71182 xref: NIF_GrossAnatomy:birnlex_753 xref: SCTID:278757007 is_a: UBERON:0007714 ! cervical subsegment of spinal cord [Term] id: UBERON:0006491 name: fifth cervical spinal cord segment subset: defined_by_ordinal_series synonym: "C5 segment" EXACT [FMA:71183] synonym: "C5 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_760] synonym: "fifth cervical spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_760] xref: FMA:71183 xref: NIF_GrossAnatomy:birnlex_760 xref: SCTID:278758002 is_a: UBERON:0007714 ! cervical subsegment of spinal cord [Term] id: UBERON:0006492 name: sixth cervical spinal cord segment subset: defined_by_ordinal_series synonym: "C6 segment" EXACT [FMA:71184] synonym: "C6 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_766] synonym: "sixth cervical spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_766] xref: FMA:71184 xref: NIF_GrossAnatomy:birnlex_766 xref: SCTID:278759005 is_a: UBERON:0007714 ! cervical subsegment of spinal cord [Term] id: UBERON:0006493 name: seventh cervical spinal cord segment subset: defined_by_ordinal_series synonym: "C7 segment" EXACT [FMA:71185] synonym: "C7 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_773] synonym: "seventh cervical spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_773] xref: FMA:71185 xref: NIF_GrossAnatomy:birnlex_773 xref: SCTID:278760000 is_a: UBERON:0007714 ! cervical subsegment of spinal cord [Term] id: UBERON:0006494 name: apex of arytenoid synonym: "apex of arytenoid cartilage" EXACT [FMA:55348] synonym: "arytenoid cartilage apex" EXACT [FMA:55348] xref: FMA:55348 xref: MA:0001760 xref: SCTID:279534007 is_a: UBERON:0001996 ! elastic cartilage is_a: UBERON:0003406 ! implied link automatically realized ! cartilage of respiratory system is_a: UBERON:0003572 ! implied link automatically realized ! chest connective tissue is_a: UBERON:0003583 ! implied link automatically realized ! larynx connective tissue is_a: UBERON:0004267 ! implied link automatically realized ! back connective tissue relationship: part_of UBERON:0001740 ! arytenoid cartilage [Term] id: UBERON:0006495 name: osseus cochlear canal synonym: "osseous cochlear canal" EXACT [FMA:75666] xref: FMA:75666 xref: MA:0001183 is_a: UBERON:0005744 ! cranial conduit [Term] id: UBERON:0006496 name: external acoustic meatus osseus part synonym: "osseous external acoustic tube" EXACT [FMA:61290] synonym: "osseous part of external acoustic meatus" EXACT [FMA:61290] xref: FMA:61290 xref: MA:0001235 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001352 ! external acoustic meatus [Term] id: UBERON:0006497 name: foot interosseus muscle synonym: "foot interosseous" EXACT [FMA:37456] synonym: "interosseous of foot" EXACT [FMA:37456] xref: FMA:37456 xref: MA:0002302 xref: ncithesaurus:Foot_Interosseous_Muscle xref: SCTID:181714004 is_a: UBERON:0001498 ! implied link automatically realized ! muscle of foot is_a: UBERON:0006508 ! implied link automatically realized ! interosseus muscle relationship: part_of UBERON:0002387 intersection_of: UBERON:0006508 ! interosseus muscle intersection_of: part_of UBERON:0002387 ! foot [Term] id: UBERON:0006499 name: dorsal foot interosseus muscle synonym: "dorsal interosseous of foot" EXACT [FMA:37457] xref: FMA:37457 xref: MA:0002303 xref: ncithesaurus:Dorsal_Foot_Interosseous_Muscle is_a: UBERON:0006497 ! foot interosseus muscle [Term] id: UBERON:0006502 name: plantar foot interosseus muscle synonym: "plantar interosseous of foot" EXACT [FMA:37458] xref: FMA:37458 xref: MA:0002304 xref: ncithesaurus:Plantar_Foot_Interosseus_Muscle is_a: UBERON:0006497 ! foot interosseus muscle [Term] id: UBERON:0006505 name: palmar hand interosseus muscle synonym: "palmar interosseous of hand" EXACT [FMA:37419] xref: FMA:37419 xref: MA:0002315 xref: ncithesaurus:Palmar_Hand_Interosseus_Muscle is_a: UBERON:0001502 ! interosseous muscle of hand [Term] id: UBERON:0006508 name: interosseus muscle is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0003661 ! implied link automatically realized ! limb muscle relationship: part_of UBERON:0002470 ! autopod [Term] id: UBERON:0006514 name: pallidum def: "Part of what are called the basal ganglia of the brain which consist of the globus pallidus and the ventral pallidum." [http://www.medterms.com/script/main/art.asp?articlekey=11614] synonym: "neuraxis pallidum" EXACT [FMA:83684] synonym: "pallidum of neuraxis" EXACT [FMA:83684] xref: ABA:PAL xref: FMA:83684 xref: MA:0000889 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0002420 ! basal ganglion relationship: spatially_disjoint_from UBERON:0002435 {source="ABA"} ! striatum [Term] id: UBERON:0006516 name: dorsal pallidum synonym: "dorsal globus pallidus" RELATED [BTO:0004376] xref: BTO:0004376 xref: FMA:77619 is_a: UBERON:0006514 ! pallidum [Term] id: UBERON:0006517 name: kidney calyx def: "Recesses of the kidney pelvis which divides into two wide, cup-shaped major renal calices, with each major calix subdivided into 7 to 14 minor calices. Urine empties into a minor calix from collecting tubules, then passes through the major calix, renal pelvis, and ureter to enter the urinary bladder. (From Moore, Clinically Oriented Anatomy, 3d ed, p211)" [MESH:A.05.810.453.537.503] synonym: "calyx" BROAD [EMAPA:18676] synonym: "renal calyx" RELATED [MA:0000369] xref: EMAPA:18676 xref: GAID:427 xref: MA:0000369 xref: MESH:A.05.810.453.537.503 xref: ncithesaurus:Renal_Calyx is_a: UBERON:0000063 ! organ segment is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0001224 ! renal pelvis [Term] id: UBERON:0006518 name: right lung lobe synonym: "lobe of the right lung" EXACT [ncithesaurus:Lobe_of_the_Right_Lung] xref: MA:0001791 xref: ncithesaurus:Lobe_of_the_Right_Lung xref: SCTID:272654004 is_a: UBERON:0000101 ! implied link automatically realized ! lobe of lung relationship: part_of UBERON:0002167 intersection_of: UBERON:0000101 ! lobe of lung intersection_of: part_of UBERON:0002167 ! right lung [Term] id: UBERON:0006524 name: alveolar system def: "System pertaining to a bronchus and alveoli." [BTO:0000136] synonym: "bronchoalveolar system" RELATED [BTO:0000136] synonym: "pulmonary alveolar system" EXACT [MP:0010899] xref: BTO:0000136 xref: EMAPA:19001 xref: EMAPA:19003 xref: EMAPA:19005 xref: EMAPA:19007 xref: EMAPA:19009 xref: MA:0000416 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000467 ! anatomical system relationship: part_of UBERON:0002048 ! lung [Term] id: UBERON:0006525 name: left lung alveolar system xref: MA:0001775 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0002168 ! left lung relationship: part_of UBERON:0006524 ! alveolar system [Term] id: UBERON:0006526 name: right lung alveolar system xref: MA:0001784 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0002167 ! right lung relationship: part_of UBERON:0006524 ! alveolar system [Term] id: UBERON:0006530 name: seminal fluid def: "The fluid portion of the semen, in which the spermatozoa are suspended[BTO]." [BTO:0001232] synonym: "prostate fluid" RELATED [BTO:0001232] synonym: "prostatic fluid" RELATED [BTO:0001232] synonym: "seminal fluid" RELATED [BTO:0001232] synonym: "seminal plasma" EXACT [BTO:0001232] xref: BTO:0001232 xref: FMA:62967 xref: MA:0002523 xref: MAT:0000057 xref: MIAA:0000057 xref: ncithesaurus:Seminal_Fluid is_a: UBERON:0000456 ! implied link automatically realized ! secretion relationship: part_of UBERON:0001968 relationship: secreted_by UBERON:0002367 intersection_of: UBERON:0000456 ! secretion intersection_of: part_of UBERON:0001968 ! semen intersection_of: secreted_by UBERON:0002367 ! prostate gland [Term] id: UBERON:0006531 name: oculomotor muscle def: "The muscles that move the eye. Included in this group are the medial rectus, lateral rectus, superior rectus, inferior rectus, inferior oblique, superior oblique, musculus orbitalis, and levator palpebrae superioris." [MESH:A.02.633.567.700] comment: we follow MA in making this a subckass of extra-ocular muscle but the distinction is not clear xref: MA:0002432 xref: MESH:A.02.633.567.700 xref: ncithesaurus:Oculomotor_Muscle is_a: UBERON:0001601 {source="MA"} ! extra-ocular muscle [Term] id: UBERON:0006532 name: oblique extraocular muscle xref: MA:0001275 is_a: UBERON:0006531 ! oculomotor muscle [Term] id: UBERON:0006533 name: rectus extraocular muscle xref: MA:0001278 is_a: UBERON:0006531 ! oculomotor muscle [Term] id: UBERON:0006534 name: renal convoluted tubule synonym: "convoluted tubule" EXACT [] xref: MA:0001665 xref: ncithesaurus:Convoluted_Tubule xref: SCTID:361333002 is_a: UBERON:0007685 ! region of nephron tubule [Term] id: UBERON:0006535 name: skin fluid/secretion synonym: "skin fluid" RELATED [] synonym: "skin secretion" RELATED [] xref: MA:0002537 is_a: UBERON:0000463 ! implied link automatically realized ! portion of organism substance relationship: secreted_by UBERON:0000014 intersection_of: UBERON:0000463 ! portion of organism substance intersection_of: secreted_by UBERON:0000014 ! zone of skin [Term] id: UBERON:0006536 name: male reproductive system fluid/secretion synonym: "male reproductive system fluid" RELATED [] synonym: "male reproductive system secretion" RELATED [] xref: MA:0002521 is_a: UBERON:0000463 ! implied link automatically realized ! portion of organism substance relationship: secreted_by UBERON:0000079 intersection_of: UBERON:0000463 ! portion of organism substance intersection_of: secreted_by UBERON:0000079 ! male reproductive system [Term] id: UBERON:0006537 name: female reproductive system fluid/secretion synonym: "female reproductive system fluid" RELATED [] synonym: "female reproductive system secretion" RELATED [] xref: MA:0002510 is_a: UBERON:0000463 ! implied link automatically realized ! portion of organism substance relationship: secreted_by UBERON:0000474 intersection_of: UBERON:0000463 ! portion of organism substance intersection_of: secreted_by UBERON:0000474 ! female reproductive system [Term] id: UBERON:0006538 name: respiratory system fluid/secretion synonym: "respiratory system fluid" RELATED [] synonym: "respiratory system secretion" RELATED [] xref: MA:0002533 is_a: UBERON:0000463 ! implied link automatically realized ! portion of organism substance relationship: secreted_by UBERON:0001004 intersection_of: UBERON:0000463 ! portion of organism substance intersection_of: secreted_by UBERON:0001004 ! respiratory system [Term] id: UBERON:0006539 name: mammary gland fluid/secretion synonym: "lactiferous gland fluid" RELATED [] synonym: "lactiferous gland secretion" RELATED [] synonym: "mammary gland fluid" RELATED [] synonym: "mammary gland secretion" RELATED [] xref: MA:0002505 is_a: UBERON:0006540 ! implied link automatically realized ! exocrine gland fluid/secretion relationship: secreted_by UBERON:0001911 intersection_of: UBERON:0000463 ! portion of organism substance intersection_of: secreted_by UBERON:0001911 ! mammary gland [Term] id: UBERON:0006540 name: exocrine gland fluid/secretion def: "Secretion discharged by an exocrine gland to an external or internal surface of the body." [BTO:0002977] synonym: "exocrine gland fluid" RELATED [] synonym: "exocrine gland secretion" RELATED [] synonym: "external secretion" RELATED [BTO:0002977] xref: BTO:0002977 xref: MA:0002504 is_a: UBERON:0000456 {source="BTO"} ! secretion relationship: secreted_by UBERON:0002365 intersection_of: UBERON:0000463 ! portion of organism substance intersection_of: secreted_by UBERON:0002365 ! exocrine gland [Term] id: UBERON:0006541 name: outer medulla inner stripe loop of henle xref: EMAPA:29679 xref: MA:0002627 is_a: UBERON:0001288 ! implied link automatically realized ! loop of Henle relationship: part_of UBERON:0004201 intersection_of: UBERON:0001288 ! loop of Henle intersection_of: part_of UBERON:0004201 ! kidney outer medulla inner stripe [Term] id: UBERON:0006542 name: outer medulla outer stripe loop of henle xref: EMAPA:29665 xref: MA:0002630 is_a: UBERON:0001288 ! implied link automatically realized ! loop of Henle relationship: part_of UBERON:0004202 intersection_of: UBERON:0001288 ! loop of Henle intersection_of: part_of UBERON:0004202 ! kidney outer medulla outer stripe [Term] id: UBERON:0006544 name: kidney vasculature subset: vertebrate_core xref: EMAPA:28457 xref: ZFA:0005305 is_a: UBERON:0002201 ! implied link automatically realized ! vasculature of trunk is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure is_a: UBERON:0006876 ! implied link automatically realized ! vasculature of organ relationship: part_of UBERON:0002113 intersection_of: UBERON:0002049 ! vasculature intersection_of: part_of UBERON:0002113 ! kidney [Term] id: UBERON:0006553 name: renal duct def: "A tube in the kidney that collect and transport urine." [ZFIN:ZDB-PUB-071029-9] comment: in ZFA this is defined as part of mesonephros xref: ZFA:0005289 is_a: UBERON:0000058 ! implied link automatically realized ! duct is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0002113 intersection_of: UBERON:0000058 ! duct intersection_of: part_of UBERON:0002113 ! kidney [Term] id: UBERON:0006554 name: urinary system structure comment: editor note: note that we do not explicitly exclude entities such as WBbt:0005777 (excretory duct) here, but they will be automatically classified under this class after reasoning xref: SCTID:122489005 is_a: UBERON:0000061 ! implied link automatically realized ! anatomical structure relationship: part_of UBERON:0001008 intersection_of: UBERON:0000061 ! anatomical structure intersection_of: part_of UBERON:0001008 ! excretory system [Term] id: UBERON:0006555 name: excretory tube is_a: UBERON:0000025 ! implied link automatically realized ! tube is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0001008 intersection_of: UBERON:0000025 ! tube intersection_of: part_of UBERON:0001008 ! excretory system [Term] id: UBERON:0006558 name: lymphatic part of lymphoid system synonym: "lymphatic system" EXACT [FMA:7162, MA:0002435] synonym: "lymphatic tree system" EXACT [FMA:7162] xref: AAO:0010522 xref: EFO:0000870 xref: EMAPA:18248 xref: FMA:7162 xref: MA:0002961 xref: MESH:A.15.382.520 xref: SCTID:362597000 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0002465 ! lymphoid system relationship: part_of UBERON:0004535 ! cardiovascular system [Term] id: UBERON:0006561 name: non-lymphatic part of lymphoid system synonym: "non-lymphatic lymphoid system" EXACT [FMA:74623] xref: FMA:74623 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0002465 ! lymphoid system [Term] id: UBERON:0006562 name: pharynx def: "The pharynx is the part of the digestive system immediately posterior to the mouth[GO]." [GO:0060465] comment: This is a dubious grouping class that collects structures as diverse as the chordate pharynx (which is a subclass - UBERON:0001042) and the nematode pharynx. This portion of the ontology should be revised, but this should be done in sync with GO, from which this grouping arises subset: grouping_class subset: uberon_slim xref: AAO:0000967 xref: FBbt:00005380 xref: MAT:0000049 xref: MIAA:0000049 xref: SCTID:181211006 xref: WBbt:0003681 is_a: UBERON:0004921 ! subdivision of digestive tract relationship: continuous_with UBERON:0001043 ! esophagus [Term] id: UBERON:0006563 name: tunica media of pulmonary trunk def: "Tunica media of artery which is continuous with the myocardium of right ventricle.[FMA]" [FMA:85030, FMA:FMA] xref: FMA:85030 is_a: UBERON:0002522 ! implied link automatically realized ! tunica media relationship: part_of UBERON:0002333 intersection_of: UBERON:0002522 ! tunica media intersection_of: part_of UBERON:0002333 ! pulmonary trunk [Term] id: UBERON:0006564 name: superficial palmar arch synonym: "arcus palmaris superficialis" EXACT [FMA:22834, FMA:TA] synonym: "Superficial palmar arch" EXACT [FMA:22834] synonym: "superficial palmar arterial arch" EXACT [FMA:22834] xref: FMA:22834 xref: MA:0002127 xref: ncithesaurus:Superficial_Palmar_Arch xref: SCTID:362051006 is_a: UBERON:0004563 ! forelimb digital vein [Term] id: UBERON:0006565 name: female urethral meatus synonym: "external orifice of female urethra" EXACT [FMA:85266] synonym: "External urethral orifice (female)" EXACT [FMA:85266] synonym: "female urethral meatus" EXACT [FMA:85266] synonym: "ostium urethrae externum (urethra feminina)" EXACT [FMA:85266, FMA:TA] xref: FMA:85266 xref: MA:0002639 xref: SCTID:279479008 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000161 ! orifice is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0001334 ! female urethra [Term] id: UBERON:0006566 name: left ventricle myocardium def: "Myocardium of ventricle which is continuous with the tunica media of aorta.[FMA]" [FMA:9558, FMA:FMA] synonym: "Left ventricular myocardium" EXACT [FMA:9558] synonym: "myocardium of left ventricle" EXACT [FMA:9558] xref: FMA:9558 xref: MA:0002983 xref: SCTID:362021000 is_a: UBERON:0001083 ! implied link automatically realized ! myocardium of ventricle relationship: part_of UBERON:0002084 intersection_of: UBERON:0001083 ! myocardium of ventricle intersection_of: part_of UBERON:0002084 ! heart left ventricle relationship: continuous_with UBERON:0003618 ! aorta tunica media [Term] id: UBERON:0006567 name: right ventricle myocardium def: "Myocardium of ventricle which is continuous with the tunica media of the pulmonary trunk.[FMA]" [FMA:9535, FMA:FMA] synonym: "myocardium of right ventricle" EXACT [FMA:9535] synonym: "Right ventricular myocardium" EXACT [FMA:9535] xref: FMA:9535 xref: MA:0002984 xref: SCTID:362020004 is_a: UBERON:0001083 ! implied link automatically realized ! myocardium of ventricle relationship: part_of UBERON:0002080 intersection_of: UBERON:0001083 ! myocardium of ventricle intersection_of: part_of UBERON:0002080 ! heart right ventricle relationship: continuous_with UBERON:0006563 ! tunica media of pulmonary trunk [Term] id: UBERON:0006568 name: hypothalamic nucleus synonym: "nucleus of hypothalamus" EXACT [FMA:258762] xref: BTO:0002449 xref: FMA:258762 xref: MA:0002426 xref: SCTID:279304003 is_a: UBERON:0003048 ! implied link automatically realized ! regional part of hypothalamus is_a: UBERON:0006569 ! implied link automatically realized ! diencephalic nucleus relationship: part_of UBERON:0001898 intersection_of: UBERON:0002308 ! nucleus of brain intersection_of: part_of UBERON:0001898 ! hypothalamus [Term] id: UBERON:0006569 name: diencephalic nucleus xref: ZFA:0001659 is_a: UBERON:0002308 ! implied link automatically realized ! nucleus of brain is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon relationship: part_of UBERON:0001894 intersection_of: UBERON:0002308 ! nucleus of brain intersection_of: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0006570 name: trabecula carnea of right ventricle synonym: "trabeculae carneae (ventriculus dexter)" EXACT [FMA:7270] xref: FMA:7270 xref: SCTID:192373001 is_a: UBERON:0002511 ! implied link automatically realized ! trabecula carnea relationship: part_of UBERON:0002080 intersection_of: UBERON:0002511 ! trabecula carnea intersection_of: part_of UBERON:0002080 ! heart right ventricle [Term] id: UBERON:0006571 name: trabecula carnea of left ventricle synonym: "trabeculae carneae (ventriculus sinister)" EXACT [FMA:7271] xref: FMA:7271 xref: SCTID:190344008 is_a: UBERON:0002511 ! implied link automatically realized ! trabecula carnea relationship: part_of UBERON:0002084 intersection_of: UBERON:0002511 ! trabecula carnea intersection_of: part_of UBERON:0002084 ! heart left ventricle [Term] id: UBERON:0006574 name: pectinate line def: "The pectinate line (anocutaneous line, dentate line, anorectal junction) is a line which divides the upper 2/3rds and lower 1/3rd of the anal canal. Developmentally, this line represents the hindgut-proctodeum junction. It is an important anatomical landmark, and several distinctions can be made based upon the location of a structure relative to this line:" [Wikipedia:Pectinate_line] comment: FMA also has FMA:29321 but it's not clear how this differs synonym: "dentate line" RELATED [Wikipedia:Pectinate_line] synonym: "Hilton's 'white line'" RELATED [EMAPA:19159] synonym: "pectinate line of anal canal" EXACT [FMA:75383] synonym: "recto-anal junction" RELATED [Wikipedia:Pectinate_line] synonym: "site of anal membrane" RELATED [EMAPA:19159] xref: EMAPA:19159 xref: FMA:75383 xref: ncithesaurus:Pectinate_Line xref: SCTID:245445008 xref: Wikipedia:Pectinate_line is_a: UBERON:0000015 ! implied link automatically realized ! anatomical boundary relationship: adjacent_to UBERON:0000931 relationship: adjacent_to UBERON:0001046 intersection_of: UBERON:0000015 ! anatomical boundary intersection_of: adjacent_to UBERON:0000931 ! proctodeum intersection_of: adjacent_to UBERON:0001046 ! hindgut relationship: part_of UBERON:0000159 ! anal canal [Term] id: UBERON:0006575 name: mantle def: "A fold or lobe or pair of lobes of the body wall of a mollusk or brachiopod that in shell-bearing forms lines the shell and bears shell-secreting glands." [BTO:0000825, Wipikedia:Mantle_(mollusc)] synonym: "mantle tissue" RELATED [BTO:0000825] synonym: "pallium" RELATED [Wipikedia:Mantle_(mollusc)] xref: BTO:0000825 is_a: UBERON:0000309 ! body wall [Term] id: UBERON:0006580 name: mantle cavity def: "Within the shell is a fleshy layer of tissue called the mantle; there is a cavity (the mantle cavity) between the mantle and the body wall proper." [BTO:0000826] xref: BTO:0000826 is_a: UBERON:0002553 ! implied link automatically realized ! anatomical cavity relationship: part_of UBERON:0006575 intersection_of: UBERON:0002553 ! anatomical cavity intersection_of: part_of UBERON:0006575 ! mantle [Term] id: UBERON:0006581 name: mantle muscle xref: BTO:0000827 is_a: UBERON:0003896 ! implied link automatically realized ! muscle of body wall relationship: part_of UBERON:0006575 intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0006575 ! mantle [Term] id: UBERON:0006582 name: statolith def: "Acellular mineralized structure located in the statocyst (balance organ) of some aquatic invertebrates[WP,CJM]." [UBERON:cjm] is_a: UBERON:0000476 ! acellular anatomical structure relationship: part_of UBERON:0006583 ! statocyst [Term] id: UBERON:0006583 name: statocyst def: "Acellular mineralized structure located in the statocyst (balance organ) of some aquatic invertebrates[WP]." [Wikipedia:Statocyst] comment: todo - add statolith organ subset: organ_slim is_a: UBERON:0000062 ! organ [Term] id: UBERON:0006585 name: vestibular organ synonym: "balance organ" EXACT [UBERON:cjm] xref: NIF_GrossAnatomy:birnlex_2519 is_a: UBERON:0000020 ! implied link automatically realized ! sense organ relationship: part_of UBERON:0004681 intersection_of: UBERON:0000062 ! organ intersection_of: part_of UBERON:0004681 ! vestibular system [Term] id: UBERON:0006586 name: otolymph xref: MA:0002527 xref: ncithesaurus:Otolymph is_a: UBERON:0000463 ! portion of organism substance relationship: part_of UBERON:0001846 ! internal ear [Term] id: UBERON:0006587 name: ligamentum venosum def: "The ligamentum venosum is the fibrous remnant of the ductus venosus of the fetal circulation. Usually, it is attached to the left branch of the portal vein within the porta hepatis (gateway to the liver). It may be continuous with the round ligament of liver (ligamentum teres hepatis). It is invested by the peritoneal folds of the lesser omentum within a fissure on the inferior surface of the liver between the caudate and main parts of the left lobe." [Wikipedia:Ligamentum_venosum] synonym: "ligament of arantius" EXACT [FMA:14080] synonym: "ligamentum venosum (ductus venosus)" EXACT [FMA:14080] synonym: "ligamentum venosum of liver" EXACT [FMA:14080] synonym: "ligamentum venosus" EXACT [Wikipedia:Ligamentum_venosum] xref: FMA:14080 xref: SCTID:80391004 is_a: UBERON:0006592 {source="FMA"} ! transformed vein relationship: develops_from UBERON:0002083 ! ductus venosus [Term] id: UBERON:0006588 name: round ligament of liver def: "a degenerative string of tissue that exists in the free edge of the falciform ligament of the liver. Anatomically, the round ligament divides the left part of the liver into medial and lateral sections. The round ligament represents the remnant of the fetal left umbilical vein. The round ligament therefore only exists in mammals. Prenatally and for a month or two after birth, the left umbilical vein is patent, subsequently degenerating to fibrous tissue, the round ligament. The umbilical vein/round ligament inserts around the umbilicus and is an important landmark of the inner surface of the anterior abdominal wall[WP]." [Wikipedia:Round_ligament_of_liver] synonym: "ligamentum teres" BROAD [Wikipedia:Round_ligament_of_liver] synonym: "ligamentum teres hepatis" EXACT [FMA:14079, FMA:TA] synonym: "ligamentum teres hepatitis" EXACT [Wikipedia:Round_ligament_of_liver] synonym: "ligamentum teres of liver" EXACT [FMA:14079] xref: FMA:14079 xref: ncithesaurus:Round_Ligament_of_the_Liver xref: SCTID:262209009 is_a: UBERON:0006592 ! transformed vein [Term] id: UBERON:0006589 name: round ligament of uterus def: "The round ligament of the uterus originates at the uterine horns, in the parametrium. It leaves the pelvis via the deep inguinal ring, passes through the inguinal canal and continues on to the labia majora where its fibers spread and mix with the tissue of the mons pubis[WP]. A fibromuscular band that attaches to the uterus and then passes along the broad ligament, out through the inguinal ring, and into the labium majus[MESH]." [MESH:A.02.513.803, Wikipedia:Round_ligament_of_uterus] synonym: "Hunter's ligament" EXACT [FMA:20420] synonym: "ligamentum teres of uterus" EXACT [] synonym: "ligamentum teres uteri" EXACT [Wikipedia:Round_ligament_of_uterus] synonym: "round ligament" BROAD [GAID:130] synonym: "round ligament of the uterus" EXACT [Wikipedia:Round_ligament_of_uterus] xref: FMA:20420 xref: GAID:130 xref: ncithesaurus:Round_Ligament_of_the_Uterus xref: SCTID:245495009 is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0008845 {source="FMA"} ! nonskeletal ligament disjoint_from: UBERON:0006588 ! round ligament of liver relationship: develops_from UBERON:0004346 {source="Wikipedia"} ! gubernaculum [Term] id: UBERON:0006590 name: vestigial embryonic structure def: "Anatomical structure which is a remnant of an embryonic structure in the postnatal period. Examples: median umbilical ligament, paroohoron, prostatic utricle, ligamentum arteriosum.[FMA]" [FMA:16558, FMA:FMA] xref: FMA:16558 is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0006591 name: transformed artery xref: FMA:14076 is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0006590 ! implied link automatically realized ! vestigial embryonic structure relationship: develops_from UBERON:0001637 intersection_of: UBERON:0006590 ! vestigial embryonic structure intersection_of: develops_from UBERON:0001637 ! artery [Term] id: UBERON:0006592 name: transformed vein xref: FMA:14078 is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0006590 ! implied link automatically realized ! vestigial embryonic structure relationship: develops_from UBERON:0001638 intersection_of: UBERON:0006590 ! vestigial embryonic structure intersection_of: develops_from UBERON:0001638 ! vein [Term] id: UBERON:0006594 name: chorda gubernaculum def: "A portion of the gubernaculum testis and round ligament that develops in the body wall of the embryo." [Dorlands_Medical_Dictionary:MerckSource] xref: BTO:0002814 is_a: UBERON:0002050 ! implied link automatically realized ! embryonic structure is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure is_a: UBERON:0006590 ! vestigial embryonic structure relationship: part_of UBERON:0004346 ! gubernaculum [Term] id: UBERON:0006595 name: presumptive endoderm xref: AAO:0000471 xref: EFO:0003437 xref: ZFA:0000416 is_a: UBERON:0006598 ! presumptive structure [Term] id: UBERON:0006596 name: presumptive blood xref: AAO:0000468 xref: EFO:0003439 xref: ZFA:0000568 is_a: UBERON:0006598 ! presumptive structure [Term] id: UBERON:0006597 name: quadrate def: "The quadrate is the dorsal bone in the jaw joint with the anguloarticular of the lower jaw. Ossification of the quadrate, a cartilage bone, begins as a posteriorly projecting membranous spine between the symplectic cartilage and the preopercle (5.1 mm NL). The body of the quadrate ossifies first at the ball-and-socket articulation with the anguloarticular (6.5 mm). The adult quadrate is shaped roughly like an inverted triangle with a long, posteriorly projecting spine off its posteroventral edge. The presence of a posteroventral or posterior process of the quadrate is a synapomorphy of Teleostei." [ZFA:0000621] comment: In snakes, the quadrate bone has become elongated and very mobile, and contributes greatly to their ability to swallow very large prey items. In mammals the articular and quadrate bones have migrated to the middle ear and are known as the malleus and incus. In fact, paleontologists regard this modification as the defining characteristic of mammalian hearing structures.[1] This migration was first described by Reichert in 1837. In pig embryos he discovered that the mandible ossifies on the side of Meckel's cartilage, while the posterior part of that cartilage is ossified and then detaches from the rest of the cartilage to enter the middle ear where it becomes the malleus synonym: "quadrate - incus" BROAD [OG:0000689] synonym: "quadrate bone" EXACT [AAO:0000525] xref: AAO:0000525 xref: EFO:0003547 xref: OG:0000689 xref: ZFA:0000621 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0003462 ! implied link automatically realized ! viscerocranium bone relationship: develops_from UBERON:0004752 ! palatoquadrate cartilage relationship: homologous_to UBERON:0001688 {source="Wikipedia:Incus"} ! incus relationship: part_of UBERON:0001709 ! upper jaw relationship: part_of UBERON:0003108 ! suspensorium [Term] id: UBERON:0006598 name: presumptive structure synonym: "presumptive structures" EXACT [ZFA:0001116] xref: AAO:0000479 xref: ZFA:0001116 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0006599 name: presumptive hypochord xref: AAO:0000474 xref: EFO:0003453 xref: ZFA:0001217 is_a: UBERON:0006598 ! presumptive structure [Term] id: UBERON:0006600 name: presumptive enteric nervous system xref: AAO:0000472 xref: EFO:0003462 xref: ZFA:0001334 is_a: UBERON:0006598 ! presumptive structure relationship: develops_from UBERON:0005428 ! vagal neural crest [Term] id: UBERON:0006601 name: presumptive ectoderm def: "Presumptive structure at the animal poll of the blastula that will develop into ectoderm via the epiblast. Determined by fate mapping." [ZFA:0001376] comment: note: AAO:0000473 synonym: "presumptive epidermis" RELATED [ZFA:0001376] xref: AAO:0000470 xref: EFO:0003466 xref: XAO:0004132 xref: ZFA:0001376 is_a: UBERON:0006598 ! presumptive structure [Term] id: UBERON:0006603 name: presumptive mesoderm xref: AAO:0000476 xref: EFO:0003467 xref: ZFA:0001377 is_a: UBERON:0006598 ! presumptive structure [Term] id: UBERON:0006604 name: lamina orbitonasalis def: "Cranial cartilage which is bilaterally paired and develops as a dorsal plate-like projection of the anterolateral ethmoid plate, which are oriented perpendicular to the ethmoid plate. It fuses dorsally to the taenia marginalis anterior, and it joins the ethmoid cartilage medially." [ZFA:0001503] synonym: "laminas orbitonasalis" EXACT [ZFA:0001503] xref: AAO:0000262 xref: ZFA:0001503 is_a: UBERON:0003932 ! chondrocranium cartilage relationship: part_of UBERON:0001703 ! neurocranium [Term] id: UBERON:0006605 name: tectum synoticum def: "Unpaired thin dorsal sheet of cartilage that partially covers the posterior chondrocranium." [ZFA:0001506] xref: AAO:0000602 xref: AAO:0010129 xref: ZFA:0001506 is_a: UBERON:0003932 ! chondrocranium cartilage relationship: part_of UBERON:0001703 ! neurocranium [Term] id: UBERON:0006606 name: mandibular symphysis def: "Joint that articulates the left and right dentary bones. Mandibular symphysis is unpaired[TAO]. The external surface of the mandible is marked in the median line by a faint ridge, indicating the symphysis menti, mandibular symphysis, or line of junction of the two pieces of which the bone is composed at an early period of life. This ridge divides below and encloses a triangular eminence, the mental protuberance, the base of which is depressed in the center but raised on either side to form the mental tubercle. It serves as the origin for the Geniohyoid and the Genioglossus[WP]" [Wikipedia:Symphysis_menti, ZFA:0005488] comment: todo - check subset: vertebrate_core synonym: "mental symphysis" RELATED [Wikipedia:Symphysis_menti] synonym: "symphysis menti" EXACT [MA:0001490] xref: AAO:0000277 xref: FMA:75779 xref: MA:0001490 xref: ZFA:0005488 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0002213 ! cartilaginous joint relationship: part_of UBERON:0001684 {source="MA"} ! mandible relationship: part_of UBERON:0001710 ! lower jaw [Term] id: UBERON:0006607 name: medial umbilical ligament def: "The medial umbilical ligament is a paired structure found in human anatomy. It is on the deep surface of the anterior abdominal wall, and is covered by the medial umbilical folds." [Wikipedia:Medial_umbilical_ligament] synonym: "ligamentum umbilicale mediale" EXACT [FMA:14077] synonym: "medial umbilical fold" RELATED [Wikipedia:Medial_umbilical_ligament] synonym: "medial umbilical ligaments" RELATED [Wikipedia:Medial_umbilical_ligament] xref: FMA:14077 is_a: UBERON:0006591 ! transformed artery [Term] id: UBERON:0006608 name: corpus cavernosum clitoridis def: "The corpus cavernosum clitoridis is one of a pair of sponge-like regions of erectile tissue which contain most of the blood in the clitoris during clitoral erection. This is homologous to the corpus cavernosum penis in the male; the body of the clitoris contains erectile tissue in a pair of corpora cavernosa (literally \"cave-like bodies\"), with a recognisably similar structure." [Wikipedia:Corpus_cavernosum_of_clitoris] synonym: "cavernous body of clitoris" RELATED [BTO:0002018] synonym: "clitoral corpus cavernosum" RELATED [BTO:0002018] synonym: "corpus cavernosum" RELATED [BTO:0002018] xref: BTO:0002018 xref: FMA:20172 is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure is_a: UBERON:0006609 ! implied link automatically realized ! corpus cavernosum relationship: part_of UBERON:0002411 intersection_of: UBERON:0006609 ! corpus cavernosum intersection_of: part_of UBERON:0002411 ! clitoris [Term] id: UBERON:0006609 name: corpus cavernosum xref: SCTID:245468004 is_a: UBERON:0008324 ! erectile tissue [Term] id: UBERON:0006610 name: tunica albuginea def: "White covering over one of: penis, testicles or ovaries." [Wikipedia:Tunica_albuginea] xref: ncithesaurus:Tunica_Albuginea is_a: UBERON:0000158 ! membranous layer [Term] id: UBERON:0006611 name: exoskeleton def: "Exoskeleton or shell, including those of mollusks, turtles, insects and crustaceans." [Wikipedia:Exoskeleton] comment: Editor note: consider adding a separate class for dermal skeleton synonym: "shell" RELATED [BTO:0004659] xref: BTO:0004659 is_a: UBERON:0002199 ! integument [Term] id: UBERON:0006612 name: shell subset: grouping_class xref: ncithesaurus:Shell is_a: UBERON:0006611 ! exoskeleton [Term] id: UBERON:0006614 name: aponeurosis def: "Aponeuroses are layers of flat broad tendons. They have a shiny, whitish-silvery color, and are histologically similar to tendons, but are very sparingly supplied with blood vessels and nerves. When dissected, aponeuroses are papery, and peel off by sections. The primary regions with thick aponeurosis is in the ventral abdominal region, the dorsal lumbar region, and in the palmar region. Their primary function is to join muscles and the body parts the muscles act upon." [Wikipedia:Aponeurosis] synonym: "aponeuroses" RELATED PLURAL [Wikipedia:Aponeurosis] synonym: "aponeurotic" RELATED [Wikipedia:Aponeurosis] xref: AEO:0000092 xref: EHDAA2:0003092 xref: FMA:9722 xref: ncithesaurus:Aponeurosis xref: SCTID:331712004 is_a: UBERON:0000158 ! membranous layer is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001630 ! muscle organ [Term] id: UBERON:0006615 name: venous sinus comment: todo - add subclasses xref: EMAPA:18633 xref: MA:0000070 xref: ncithesaurus:Venous_Sinus xref: SCTID:341586007 is_a: UBERON:0003920 ! venous blood vessel [Term] id: UBERON:0006616 name: right external ear synonym: "right auricular region" BROAD [FMA:53643] xref: FMA:53643 xref: SCTID:368567003 is_a: UBERON:0001691 ! implied link automatically realized ! external ear relationship: part_of UBERON:0004532 intersection_of: UBERON:0001691 ! external ear intersection_of: part_of UBERON:0004532 ! right side of organism [Term] id: UBERON:0006617 name: left external ear synonym: "left auricular region" BROAD [FMA:53644] xref: FMA:53644 xref: SCTID:368589004 is_a: UBERON:0001691 ! implied link automatically realized ! external ear relationship: part_of UBERON:0004531 intersection_of: UBERON:0001691 ! external ear intersection_of: part_of UBERON:0004531 ! left side of organism [Term] id: UBERON:0006618 name: atrium auricular region def: "A small conical pouch projections located on the upper anterior portion of each atrium of the heart." [MP:0010489] synonym: "atrial auricle" EXACT [MP:0010489] synonym: "auricle of heart" EXACT [FMA:77110] synonym: "auricula atrii" EXACT [FMA:77110, FMA:TA] synonym: "heart atrium auriclular region" EXACT [MP:0010489] xref: FMA:77110 xref: MA:0002955 is_a: UBERON:0000481 {source="EHDAA2"} ! multi-tissue structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure disjoint_from: UBERON:0001691 ! external ear relationship: part_of UBERON:0002081 ! cardiac atrium [Term] id: UBERON:0006630 name: left atrium auricular region synonym: "left atrial appendage" RELATED [MA:0001869] synonym: "left auricle" EXACT [FMA:7219] synonym: "left auricular region" BROAD [EMAPA:16816] xref: EHDAA:5343 xref: EHDAA2:0000276 xref: EMAPA:16816 xref: FMA:7219 xref: MA:0001869 xref: OG:0001229 is_a: UBERON:0006618 ! implied link automatically realized ! atrium auricular region relationship: part_of UBERON:0002079 intersection_of: UBERON:0006618 ! atrium auricular region intersection_of: part_of UBERON:0002079 ! left atrium [Term] id: UBERON:0006631 name: right atrium auricular region synonym: "right atrial appendage" RELATED [MA:0001870] synonym: "right auricle" EXACT [FMA:7218] synonym: "right auricular region" BROAD [EMAPA:16824] xref: EHDAA:5352 xref: EHDAA2:0000291 xref: EMAPA:16824 xref: FMA:7218 xref: MA:0001870 xref: OG:0001232 is_a: UBERON:0006618 ! implied link automatically realized ! atrium auricular region relationship: part_of UBERON:0002078 intersection_of: UBERON:0006618 ! atrium auricular region intersection_of: part_of UBERON:0002078 ! right atrium [Term] id: UBERON:0006632 name: musculo-phrenic artery xref: EMAPA:19215 xref: FMA:10645 xref: SCTID:244242003 is_a: UBERON:0003834 ! implied link automatically realized ! thoracic segment blood vessel is_a: UBERON:0004573 ! systemic artery relationship: branch_of UBERON:0002456 ! internal thoracic artery relationship: part_of UBERON:0002456 ! internal thoracic artery [Term] id: UBERON:0006633 name: coracoid process def: "The coracoid process is a small hook-like structure on the lateral edge of the superior anterior portion of the scapula. Pointing laterally forward, it, together with the acromion, serves to stabilize the shoulder joint. It is palpable in the deltopectoral groove between the deltoid and pectoralis major muscles. It is the site of attachment for several structures: * The pectoralis minor muscle - to 3rd to 5th ribs. * The short head of biceps brachii muscle - to Radial tuberosity. * The coracobrachialis muscle - to medial humerus. * The coracoclavicular ligament - to the clavicle. (The ligament is formed by the conoid ligament and trapezoid ligament.) * The coracoacromial ligament - to the acromion[WP]." [Wikipedia:Coracoid_process] synonym: "coracoid process of the scapula" RELATED [Wikipedia:Coracoid_process] xref: EMAPA:25121 xref: FMA:13455 is_a: UBERON:0005913 ! zone of bone organ disjoint_from: UBERON:0004743 ! coracoid relationship: part_of UBERON:0001124 ! tetrapod scapula [Term] id: UBERON:0006634 name: lingual vein def: "The lingual veins begin on the dorsum, sides, and under surface of the tongue, and, passing backward along the course of the lingual artery, end in the internal jugular vein. The vena comitans of the hypoglossal nerve (ranine vein), a branch of considerable size, begins below the tip of the tongue, and may join the lingual; generally, however, it passes backward on the Hyoglossus, and joins the common facial." [Wikipedia:Lingual_veins] synonym: "deep lingual veins" RELATED [Wikipedia:Lingual_veins] synonym: "lingual vein" RELATED [Wikipedia:Lingual_veins] synonym: "ranine" RELATED [Wikipedia:Lingual_veins] synonym: "ranine vein" RELATED [Wikipedia:Lingual_veins] xref: AAO:0010514 xref: EMAPA:19312 xref: FMA:14326 xref: SCTID:181375007 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0006635 name: anterior abdominal wall xref: EHDAA:5976 xref: EMAPA:17744 xref: FMA:14627 xref: OG:0000764 xref: SCTID:362696003 is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0003697 ! abdominal wall [Term] id: UBERON:0006636 name: lumbar artery def: "The lumbar arteries are in series with the intercostals. They are usually four in number on either side, and arise from the back of the aorta, opposite the bodies of the upper four lumbar vertebrC&. A fifth pair, small in size, is occasionally present: they arise from the middle sacral artery. They run lateralward and backward on the bodies of the lumbar vertebrC&, behind the sympathetic trunk, to the intervals between the adjacent transverse processes, and are then continued into the abdominal wall. The arteries of the right side pass behind the inferior vena cava, and the upper two on each side run behind the corresponding crus of the diaphragm. The arteries of both sides pass beneath the tendinous arches which give origin to the Psoas major, and are then continued behind this muscle and the lumbar plexus. They now cross the Quadratus lumborum, the upper three arteries running behind, the last usually in front of the muscle. At the lateral border of the Quadratus lumborum they pierce the posterior aponeurosis of the Transversus abdominis and are carried forward between this muscle and the Obliquus internus. They anastomose with the lower intercostal, the subcostal, the iliolumbar, the deep iliac circumflex, and the inferior epigastric arteries." [Wikipedia:Lumbar_arteries] synonym: "arteria lumbalis" RELATED [Wikipedia:Lumbar_arteries] synonym: "Lumbar arterial tree" EXACT [FMA:14735] synonym: "lumbar artery" RELATED [Wikipedia:Lumbar_arteries] xref: EMAPA:19096 xref: FMA:14735 xref: ncithesaurus:Lumbar_Artery xref: SCTID:244285007 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0006637 name: coeliac trunk def: "The celiac artery, also known as the celiac trunk, is the first major branch of the abdominal aorta. Branching from the aorta 'anterior to the upper part of T12' vertebra in humans, it is one of three anterior/ midline branches of the abdominal aorta." [Wikipedia:Celiac_artery] synonym: "arteria celiaca" RELATED [Wikipedia:Celiac_artery] synonym: "celiac axis" RELATED [Wikipedia:Celiac_artery] synonym: "celiac trunk" RELATED [Wikipedia:Celiac_artery] synonym: "coeliac axis" RELATED [Wikipedia:Celiac_artery] synonym: "coeliac trunck" RELATED [Wikipedia:Celiac_artery] synonym: "coeliac trunk" RELATED [Wikipedia:Celiac_artery] synonym: "coeliac trunk" EXACT [FMA:14812] synonym: "coeliaco-mesenteric trunk" EXACT [FMA:14812] synonym: "Haller's tripus" EXACT [FMA:14812] synonym: "truncus coeliacus" RELATED [Wikipedia:Celiac_artery] xref: EHDAA2:0004519 xref: EMAPA:19212 xref: FMA:14812 xref: galen:CeliacTrunk is_a: UBERON:0000063 ! organ segment is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001640 ! celiac artery [Term] id: UBERON:0006638 name: median umbilical ligament def: "The median umbilical ligament is a structure in human anatomy. It is a shrivelled piece of tissue that represents the remnant of the embryonic urachus. It extends from the apex of the bladder to the umbilicus, on the deep surface of the anterior abdominal wall. It is unpaired. It is covered by the median umbilical fold Lateral to this structure are the medial umbilical ligament (which is a different structure, not to be confused) and the lateral umbilical ligament." [Wikipedia:Median_umbilical_ligament] synonym: "median umbilical fold" RELATED [Wikipedia:Median_umbilical_ligament] synonym: "middle umbilical ligament" RELATED [Wikipedia:Median_umbilical_ligament] xref: EMAPA:29637 xref: FMA:16568 xref: SCTID:89583000 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: develops_from UBERON:0002068 ! urachus relationship: part_of UBERON:0001008 ! excretory system [Term] id: UBERON:0006639 name: crus penis def: "For their anterior three-fourths the corpora cavernosa penis lie in intimate apposition with one another, but behind they diverge in the form of two tapering processes, known as the crura, which are firmly connected to the ischial rami. Traced from behind forward, each crus begins by a blunt-pointed process in front of the tuberosity of the ischium, along the perineal surface of the conjoined (ischiopubic) ramus. Just before it meets its fellow it presents a slight enlargement, named by Georg Ludwig Kobelt (1804-1857) the bulb of the corpus cavernosum penis. Beyond this point the crus undergoes a constriction and merges into the corpus cavernosum proper, which retains a uniform diameter to its anterior end." [Wikipedia:Crus_of_penis] synonym: "crura of penis" RELATED [Wikipedia:Crus_of_penis] synonym: "Crus of penis" EXACT [FMA:18248] xref: EMAPA:19294 xref: FMA:18248 xref: SCTID:362270006 is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0004713 ! corpus cavernosum penis [Term] id: UBERON:0006640 name: crus of clitoris def: "The clitoral crura are an internal portion of the clitoris. A single one is called a clitoral crus. They are shaped like an inverted \"V\" with the vertex of the \"V\" connecting to the clitoral body. They are near the vestibular bulbs, also known as the clitoral bulbs. They are to the left and right of the urethra, urethral sponge, and vagina and extend back toward the pubic bone. The clitoral crura contain muscles called the ischiocavernosi. \"Crus\" basically translates as \"leg\", thus \"crura\" as \"legs\". Each clitoral crus connects to the rami of the pubis and the ischium. The crura, like the rest of the clitoris, are composed of two corpus cavernosa muscles, which are made up of erectile tissue." [Wikipedia:Clitoral_crura] synonym: "Clitoris crus" EXACT [FMA:20175] synonym: "crura of clitoris" RELATED [Wikipedia:Clitoral_crura] synonym: "crus clitoridis" RELATED [Wikipedia:Clitoral_crura] synonym: "crus of clitoris" RELATED [Wikipedia:Clitoral_crura] xref: EMAPA:19169 xref: EMAPA:30821 xref: FMA:20175 xref: SCTID:279860002 is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0006608 ! corpus cavernosum clitoridis [Term] id: UBERON:0006641 name: appendix epididymis def: "On the head of the epididymis is a small stalked appendage (sometimes duplicated). It is named the appendix of the epididymis (or pedunculated hydatid), and is usually regarded as a detached efferent duct. This structure is derived from the Wolffian duct as opposed to the appendix testis which is derived from the mullerian duct remnant." [Wikipedia:Appendix_of_epididymidis] synonym: "appendix epididymis" RELATED [Wikipedia:Appendix_of_epididymidis] synonym: "appendix of the epididymis" RELATED [Wikipedia:Appendix_of_epididymidis] synonym: "epididymal appendix" EXACT [FMA:18268] synonym: "epididymis appendix" EXACT [FMA:18268] xref: EMAPA:19086 xref: FMA:18268 is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure is_a: UBERON:0005160 ! vestigial structure relationship: develops_from UBERON:0003074 ! mesonephric duct relationship: part_of UBERON:0001301 ! epididymis [Term] id: UBERON:0006642 name: muscle layer of oviduct synonym: "Muscle layer of fallopian tube" EXACT [FMA:18318] synonym: "Muscle layer of oviduct" EXACT [FMA:18318] synonym: "Muscular coat of uterine tube" EXACT [FMA:18318] synonym: "Muscular layer of uterine tube" EXACT [FMA:18318] synonym: "Muscularis of uterine tube" EXACT [FMA:18318] synonym: "Tunica muscularis (Tuba uterina)" EXACT [FMA:18318] synonym: "tunica muscularis tubae uterinae" EXACT [FMA:18318, FMA:TA] synonym: "Uterine tubal muscularis" EXACT [FMA:18318] xref: EMAPA:29046 xref: FMA:18318 is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure is_a: UBERON:0006660 ! implied link automatically realized ! muscle layer relationship: part_of UBERON:0003889 intersection_of: UBERON:0006660 ! muscle layer intersection_of: part_of UBERON:0003889 ! fallopian tube [Term] id: UBERON:0006643 name: tunica albuginea of testis def: "The Tunica Albuginea is the fibrous covering of the testis. It is a dense blue-white membrane, composed of bundles of white fibrous tissue which interlace in every direction. It is covered by the tunica vaginalis, except at the points of attachment of the epididymis to the testis, and along its posterior border, where the spermatic vessels enter the gland. It is applied to the tunica vasculosa over the glandular substance of the testis, and, at its posterior border, is reflected into the interior of the gland, forming an incomplete vertical septum, called the mediastinum testis (corpus Highmori)." [Wikipedia:Tunica_albuginea_of_testis] synonym: "tunica albuginea %28testicles%29" RELATED [Wikipedia:Tunica_albuginea_of_testis] synonym: "Tunica albuginea (testis)" EXACT [FMA:19843] xref: EHDAA:9388 xref: EHDAA2:0002096 xref: EMAPA:19289 xref: FMA:19843 xref: OG:0000801 xref: SCTID:279604006 is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure is_a: UBERON:0006610 ! implied link automatically realized ! tunica albuginea relationship: part_of UBERON:0000473 intersection_of: UBERON:0006610 ! tunica albuginea intersection_of: part_of UBERON:0000473 ! testis [Term] id: UBERON:0006644 name: tunica albuginea of ovary def: "The tunica albuginea is the fibrous envelope of the corpora cavernosa penis. It is comprised of approximately 5% elastin, an extensible tissue that is primarily made up of the amino acids glycine, valine, alanine, and proline. The majority of the remaining tissue is comprised of collagen, which is made up of lysine, proline, glycine, alanine, and other amino acids . The tunica albuginea is directly involved in maintaining an erection; that is due to Buck's fascia constricting the deep dorsal vein of the penis, preventing blood from leaving and thus sustaining the erect state. The trabeculC& of the tunica albuginea are more delicate, nearly uniform in size, and the meshes between them smaller than in the corpora cavernosa penis: their long diameters, for the most part, corresponding with that of the penis. The external envelope or outer coat of the corpus spongiosum is formed partly of unstriped muscular fibers, and a layer of the same tissue immediately surrounds the canal of the urethra." [Wikipedia:Tunica_albuginea_%28penis%29] xref: EMAPA:30522 xref: FMA:18630 xref: SCTID:258409003 is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure is_a: UBERON:0006610 ! implied link automatically realized ! tunica albuginea relationship: part_of UBERON:0000992 intersection_of: UBERON:0006610 ! tunica albuginea intersection_of: part_of UBERON:0000992 ! female gonad relationship: part_of UBERON:0001307 ! capsule of ovary [Term] id: UBERON:0006645 name: adventitia of epididymis synonym: "epididymis adventitia" EXACT [FMA:19136] xref: EMAPA:30443 xref: FMA:19136 is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure is_a: UBERON:0005742 ! implied link automatically realized ! adventitia relationship: part_of UBERON:0001301 intersection_of: UBERON:0005742 ! adventitia intersection_of: part_of UBERON:0001301 ! epididymis [Term] id: UBERON:0006646 name: muscle layer of epididymis xref: EMAPA:30447 xref: EMAPA:30747 xref: FMA:19149 is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure is_a: UBERON:0006660 ! implied link automatically realized ! muscle layer relationship: part_of UBERON:0001301 intersection_of: UBERON:0006660 ! muscle layer intersection_of: part_of UBERON:0001301 ! epididymis [Term] id: UBERON:0006647 name: adventitia of ductus deferens synonym: "Adventitia of ductus deferens" EXACT [FMA:19238] synonym: "Adventitia of vas deferens" EXACT [FMA:19238] synonym: "Deferent ductal adventitia" EXACT [FMA:19238] synonym: "Tunica adventitia (Ductus deferens)" EXACT [FMA:19238] synonym: "tunica adventitia ductus deferentis" EXACT [FMA:19238, FMA:TA] xref: EMAPA:29767 xref: FMA:19238 is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure is_a: UBERON:0005742 ! implied link automatically realized ! adventitia relationship: part_of UBERON:0001000 intersection_of: UBERON:0005742 ! adventitia intersection_of: part_of UBERON:0001000 ! vas deferens [Term] id: UBERON:0006648 name: adventitia of seminal vesicle synonym: "Adventitia of seminal gland" EXACT [FMA:19403] synonym: "Seminal vesicle adventitia" EXACT [FMA:19403] synonym: "Tunica adventitia (Vesicula seminalis)" EXACT [FMA:19403] synonym: "tunica adventitia glandulae vesiculosae" EXACT [FMA:19403, FMA:TA] xref: EMAPA:29775 xref: FMA:19403 xref: SCTID:252406002 is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure is_a: UBERON:0005742 ! implied link automatically realized ! adventitia relationship: part_of UBERON:0000998 intersection_of: UBERON:0005742 ! adventitia intersection_of: part_of UBERON:0000998 ! seminal vesicle [Term] id: UBERON:0006649 name: suspensory ligament of ovary def: "is a fold of peritoneum that extends out from the ovary to the wall of the pelvis. " [Wikipedia:Suspensory_ligament_of_ovary] comment: Some sources consider it a part of the broad ligament of uterus[2] while other sources just consider it a "termination" of the ligament.[3] synonym: "infundibulopelvic fold" EXACT [FMA:19822] synonym: "infundibulopelvic ligament" EXACT [FMA:19822] xref: EMAPA:19085 xref: FMA:19822 xref: SCTID:279917007 is_a: UBERON:0002095 {source="FMA"} ! mesentery is_a: UBERON:0008841 {source="Obol"} ! suspensory ligament disjoint_from: UBERON:0008847 ! ovarian ligament relationship: attached_to UBERON:0000992 ! female gonad relationship: develops_from UBERON:0000080 {source="Wikipedia"} ! mesonephros [Term] id: UBERON:0006650 name: tunica vaginalis testis def: "The tunica vaginalis is the serous covering of the testis. It is a pouch of serous membrane, derived from the saccus vaginalis of the peritoneum, which in the fetus preceded the descent of the testis from the abdomen into the scrotum. After its descent, that portion of the pouch which extends from the abdominal inguinal ring to near the upper part of the gland becomes obliterated; the lower portion remains as a shut sac, which invests the surface of the testis, and is reflected on to the internal surface of the scrotum; hence it may be described as consisting of a visceral and a parietal lamina." [Wikipedia:Tunica_vaginalis] synonym: "lamina parietalis" RELATED [Wikipedia:Tunica_vaginalis] synonym: "lamina visceralis" RELATED [Wikipedia:Tunica_vaginalis] synonym: "tunica vaginalis testis" RELATED [Wikipedia:Tunica_vaginalis] xref: EMAPA:19179 xref: FMA:19844 is_a: UBERON:0000158 ! membranous layer is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: develops_from UBERON:0005344 ! peritoneal vaginal process [Term] id: UBERON:0006651 name: appendix testis def: "The appendix testis is a vestigial remnant of the Mullerian duct, present on the upper pole of the testis and attached to the tunica vaginalis. It is present about 90% of the time." [Wikipedia:Appendix_of_testis] synonym: "appendices testis" RELATED [Wikipedia:Appendix_of_testis] synonym: "appendix of the testis" RELATED [Wikipedia:Appendix_of_testis] synonym: "appendix testis" RELATED [Wikipedia:Appendix_of_testis] synonym: "Testis appendix" EXACT [FMA:19846] xref: EMAPA:19087 xref: FMA:19846 xref: SCTID:279601003 is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0006590 ! vestigial embryonic structure relationship: develops_from UBERON:0003890 ! Mullerian duct [Term] id: UBERON:0006652 name: muscular layer of vagina synonym: "Muscular coat of vagina" EXACT [FMA:19976] synonym: "tunica muscularis vaginae" EXACT [FMA:19976, FMA:TA] xref: EMAPA:30997 xref: FMA:19976 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002385 ! implied link automatically realized ! muscle tissue is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0000996 intersection_of: UBERON:0002385 ! muscle tissue intersection_of: part_of UBERON:0000996 ! vagina [Term] id: UBERON:0006653 name: glans clitoris def: "Erectile tissue at the end of the clitoris, which is continuous with the intermediate part of the vestibulovaginal bulbs[BTO]. The clitoral glans (glans clitoridis) is an external portion of the clitoris[WP]." [BTO:0003117, Wikipedia:Clitoral_glans] synonym: "clitoris glans" EXACT [FMA:19999] synonym: "glans clitoridis" RELATED [Wikipedia:Clitoral_glans] synonym: "glans clitoris" RELATED [Wikipedia:Clitoral_glans] xref: BTO:0003117 xref: EMAPA:19170 xref: EMAPA:30829 xref: FMA:19999 xref: ncithesaurus:Glans_Clitoris is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue is_a: UBERON:0008324 ! erectile tissue relationship: part_of UBERON:0002411 ! clitoris relationship: part_of UBERON:0006233 ! female genital tubercle [Term] id: UBERON:0006654 name: perineal body def: "The perineal body (or central tendon of perineum) is a pyramidal fibromuscular mass in the middle line of the perineum at the junction between the urogenital triangle and the anal triangle . It is found in both males and females. In males, it is found between the bulb of penis and the anus; in females, is found between the vagina and anus, and about 1.25 cm in front of the latter. The perineal body is essential for the integrity of the pelvic floor, particularly in females. Its rupture during delivery leads to widening of the gap between the anterior free borders of levator ani muscle of both sides, thus predisposing the woman to prolapse of the uterus, rectum, or even the urinary bladder." [Wikipedia:Perineal_body] synonym: "central tendinous point" RELATED [Wikipedia:Perineal_body] synonym: "central tendinous point of the perineum" RELATED [Wikipedia:Perineal_body] synonym: "central tendon of perineum" RELATED [Wikipedia:Perineal_body] synonym: "central tendon of perineum" EXACT [FMA:20274] xref: EMAPA:17892 xref: EMAPA:18921 xref: FMA:20274 xref: SCTID:367754000 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0002356 ! perineum [Term] id: UBERON:0006655 name: septum of scrotum synonym: "Scrotal septum" EXACT [FMA:20729] xref: EMAPA:29745 xref: FMA:20729 xref: SCTID:279591002 is_a: UBERON:0003037 ! septum is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0001300 ! scrotum [Term] id: UBERON:0006656 name: deep dorsal vein of penis xref: EMAPA:19219 xref: FMA:21354 xref: SCTID:55433007 is_a: UBERON:0001638 ! vein is_a: UBERON:0004803 ! implied link automatically realized ! penis epithelium relationship: part_of UBERON:0000989 ! penis relationship: tributary_of UBERON:0001317 {source="FMA/obol"} ! internal iliac vein [Term] id: UBERON:0006657 name: glenoid fossa def: "Cavity for the articulation of the forelimb formed by the scapula, coracoid, and clavicle." [AAO:Maglia_et_al_2007] synonym: "cavitas glenoidalis scapulae" EXACT [FMA:23275, FMA:TA] synonym: "Cavitus glenoidalis" EXACT [FMA:23275] synonym: "glenoid cavity" RELATED [AAO:0000749] synonym: "Glenoid cavity" EXACT [FMA:23275] synonym: "Glenoid cavity of scapula" EXACT [FMA:23275] xref: AAO:0000749 xref: EMAPA:25122 xref: FMA:23275 xref: ncithesaurus:Glenoid_Fossa is_a: UBERON:0002553 ! anatomical cavity relationship: adjacent_to UBERON:0001124 ! tetrapod scapula [Term] id: UBERON:0006658 name: inter-phalangeal joint synonym: "interphalangeal joint" EXACT [galen:InterphalangealJoint] xref: FMA:42765 xref: galen:InterphalangealJoint is_a: UBERON:0002217 ! synovial joint relationship: adjacent_to UBERON:0003221 ! phalanx [Term] id: UBERON:0006659 name: cruciate ligament def: "One of a pair of ligaments arranged like a letter X.[1] They occur in several joints of the body, such as the knee. In a fashion similar to the cords in a toy Jacob's ladder, the crossed ligaments stabilize the joint while allowing a very large range of motion[WP]." [Wikipedia:Cruciate_ligament] synonym: "cruciform ligament" EXACT [Wikipedia:Cruciate_ligament] xref: EMAPA:19010 xref: FMA:44611 xref: galen:CruciateLigament is_a: UBERON:0000211 ! ligament [Term] id: UBERON:0006660 name: muscle layer comment: TODO - add subclasses. See also: muscular coat synonym: "muscular layer" EXACT [OBOL:automatic] synonym: "muscularis layer" EXACT [FMA:45634] xref: EMAPA:29034 xref: FMA:45634 xref: ncithesaurus:Muscle_Layer is_a: UBERON:0002385 ! muscle tissue [Term] id: UBERON:0006661 name: epicranial aponeurosis def: "The galea aponeurotica (epicranial aponeurosis, aponeurosis epicranialis) is a tough layer of dense fibrous tissue which covers the upper part of the cranium; behind, it is attached, in the interval between its union with the Occipitales, to the external occipital protuberance and highest nuchal lines of the occipital bone; in front, it forms a short and narrow prolongation between its union with the Frontales. On either side it gives origin to the Auriculares anterior and superior; in this situation it loses its aponeurotic character, and is continued over the temporal fascia to the zygomatic arch as a layer of laminated areolar tissue. It is closely connected to the integument by the firm, dense, fibro-fatty layer which forms the superficial fascia of the scalp: it is attached to the pericranium by loose cellular tissue, which allows the aponeurosis, carrying with it the integument to move through a considerable distance." [Wikipedia:Galea_aponeurotica] synonym: "aponeurosis epicranialis" EXACT [FMA:46768, FMA:TA] synonym: "cranial aponeurosis" RELATED [Wikipedia:Galea_aponeurotica] synonym: "epicranial aponeurosis" RELATED [Wikipedia:Galea_aponeurotica] synonym: "Epicranial aponeurosis" EXACT [FMA:46768] synonym: "Epicranius aponeurosis" EXACT [FMA:46768] synonym: "galea aponeurosis" RELATED [Wikipedia:Galea_aponeurotica] synonym: "Galea aponeurotica" EXACT [FMA:46768] synonym: "galeal aponeurosis" RELATED [Wikipedia:Galea_aponeurotica] xref: EMAPA:19210 xref: FMA:46768 xref: SCTID:368677009 is_a: UBERON:0006614 ! aponeurosis relationship: part_of UBERON:0000403 ! scalp [Term] id: UBERON:0006662 name: musculo-phrenic vein xref: EMAPA:19222 xref: FMA:4732 xref: SCTID:1895000 is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0001589 ! internal thoracic vein relationship: tributary_of UBERON:0001589 {source="FMA/obol"} ! internal thoracic vein [Term] id: UBERON:0006663 name: hemiazygos vein def: "The hemiazygos vein (vena azygos minor inferior) is a vein running superiorly in the lower thoracic region, just to the left side of the vertebral column." [Wikipedia:Hemiazygos_vein] synonym: "hemi-azygos vein" EXACT [FMA:4944] synonym: "hemiazygos" RELATED [Wikipedia:Hemiazygos_vein] synonym: "hemiazygos veins" RELATED [Wikipedia:Hemiazygos_vein] synonym: "hemiazygous vein" RELATED [Wikipedia:Hemiazygos_vein] synonym: "hemiazygous vein" EXACT [FMA:4944] synonym: "inferior hemi-azygos vein" EXACT [FMA:4944] synonym: "vena hemiazygos" EXACT [FMA:4944, FMA:TA] xref: EHDAA2:0004534 xref: EMAPA:18251 xref: FMA:4944 xref: SCTID:244408009 is_a: UBERON:0001638 ! vein relationship: develops_from UBERON:0008267 {source="ISBN-10:0443065837"} ! left supracardinal vein relationship: part_of UBERON:0001594 ! azygos vein relationship: tributary_of UBERON:0001594 {source="FMA/obol"} ! azygos vein [Term] id: UBERON:0006664 name: greater palatine artery def: "The greater palatine artery is a terminal branch of the maxillary artery. It branches off of the maxillary artery in the pterygopalatine fossa and descends through the greater palatine foramen along with the greater palatine nerve and supplies the hard palate. It also anastomosis through the incisive canal with the sphenopalatine artery to supply the nasal cavity." [Wikipedia:Greater_palatine_artery] comment: todo - check for synonymy between greater and major xref: EMAPA:18754 xref: FMA:49795 xref: MA:0001993 xref: SCTID:312163002 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0006665 name: accessory hemiazygos vein def: "The accessory hemiazygos vein (vena azygos minor superior) is a vein on the left side of the vertebral column that generally drains the fifth through eighth intercostal spaces on the left side of the body[WP]." [Wikipedia:Accessory_hemiazygos_vein] comment: todo - add superclass synonym: "Accessory hemi-azygos vein" EXACT [FMA:5011] synonym: "Superior hemi-azygos vein" EXACT [FMA:5011] synonym: "Vena azygos accessoria" EXACT [FMA:5011] synonym: "vena hemiazygos accessoria" EXACT [FMA:5011, FMA:TA] xref: EMAPA:19217 xref: FMA:5011 is_a: UBERON:0001638 ! vein relationship: tributary_of UBERON:0001594 {source="FMA/obol"} ! azygos vein [Term] id: UBERON:0006666 name: great cerebral vein of Galen synonym: "great cerebral vein of Galen" EXACT [FMA:50993] synonym: "vein of Galen" EXACT [FMA:50993] xref: EMAPA:19311 xref: FMA:50993 xref: ncithesaurus:Great_Cerebral_Vein_of_Galen is_a: UBERON:0001663 ! cerebral vein [Term] id: UBERON:0006667 name: pituitary fossa synonym: "hypophyseal fossa" EXACT [FMA:54721] synonym: "pituitary fossa" EXACT [FMA:54721] xref: EMAPA:19195 xref: FMA:54721 xref: SCTID:264194004 is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0003689 ! sella turcica [Term] id: UBERON:0006668 name: carotid canal def: "On the interior surface of the temporal bone, behind the rough surface of the apex, is the large circular aperture of the carotid canal, which ascends at first vertically, and then, making a bend, runs horizontally forward and medialward. It transmits into the cranium, the internal carotid artery, and the carotid plexus of nerves. Sympathetics to the head also pass through the carotid canal. They have several motor functions: raise the eyelid (superior tarsal muscle), dilate pupil, innervate sweat glands of face and scalp and constricts blood vessels in head[WP]." [Wikipedia:Carotid_canal] xref: EMAPA:18707 xref: FMA:55805 is_a: UBERON:0005744 ! cranial conduit [Term] id: UBERON:0006669 name: alveolar canal def: "The infratemporal surface of the maxilla is pierced about its center by the apertures of the alveolar canals, which transmit the posterior superior alveolar vessels and nerves[WP]." [Wikipedia:Alveolar_canals] xref: EMAPA:25099 xref: FMA:57743 is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0005744 ! cranial conduit relationship: part_of UBERON:0001710 {source="EMAPA"} ! lower jaw [Term] id: UBERON:0006670 name: central tendon synonym: "central tendon of diaphragm" EXACT [FMA:58279] synonym: "centrum tendineum" EXACT [FMA:58279] synonym: "centrum tendineum diaphragmatis" EXACT [FMA:58279, FMA:TA] xref: EMAPA:17702 xref: FMA:58279 xref: ncithesaurus:Central_Tendon_of_the_Diaphragm xref: OG:0001399 xref: SCTID:244943002 is_a: UBERON:0000043 ! tendon relationship: attached_to UBERON:0002359 ! fibrous pericardium [Term] id: UBERON:0006671 name: orbital fat pad synonym: "Intraorbital fat pad" EXACT [FMA:59005] synonym: "Orbital fat" EXACT [FMA:59005] synonym: "Retrobulbar fat" EXACT [FMA:59005] xref: EMAPA:19152 xref: FMA:59005 xref: SCTID:363656009 is_a: UBERON:0003566 ! implied link automatically realized ! head connective tissue is_a: UBERON:0003916 ! fat pad relationship: part_of UBERON:0000019 ! camera-type eye [Term] id: UBERON:0006672 name: incisive canal xref: EMAPA:19034 xref: FMA:59107 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0005744 ! cranial conduit relationship: part_of UBERON:0003216 ! hard palate [Term] id: UBERON:0006673 name: mandibular canal xref: EMAPA:19161 xref: FMA:59473 xref: SCTID:368876003 is_a: UBERON:0005744 ! cranial conduit [Term] id: UBERON:0006674 name: inguinal ring xref: EMAPA:19172 xref: EMAPA:29307 xref: FMA:65075 xref: SCTID:278830004 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0006204 ! inguinal ligament [Term] id: UBERON:0006675 name: venous valve synonym: "Valve of vein" EXACT [FMA:68095] xref: EMAPA:17010 xref: EMAPA:17328 xref: FMA:68095 is_a: UBERON:0003978 ! implied link automatically realized ! valve is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001638 intersection_of: UBERON:0003978 ! valve intersection_of: part_of UBERON:0001638 ! vein [Term] id: UBERON:0006676 name: muscularis mucosa def: "The lamina muscularis mucosae (or muscularis mucosa) is the thin layer of smooth muscle found in most parts of the gastrointestinal tract, located outside the lamina propria mucosae and separating it from the submucosa. In the gastrointestinal tract, the term mucosa or \"mucous membrane\" refers to the combination of epithelium, lamina propria, and (where it occurs) muscularis mucosa. The etymology suggests this since the Latin names translate to \"the mucosa's own special layer\" (lamina propria mucosae) and \"muscular layer of the mucosa\" (lamina muscularis mucosae). The muscularis mucosa is composed of several thin layers of smooth muscle fibers oriented in different ways which keeps the mucosal surface and underlying glands in a constant state of gentle agitation to expel contents of glandular crypts and enhance contact between epithelium and the contents of the lumen." [Wikipedia:Muscularis_mucosae] synonym: "laminar muscularis mucosa" RELATED [Wikipedia:Muscularis_mucosae] synonym: "muscularis mucosae" EXACT [FMA:68413] xref: BTO:0004839 xref: FMA:68413 xref: galen:MuscularisMucosae xref: ncithesaurus:Muscularis_Mucosa xref: SCTID:370140002 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001135 ! smooth muscle tissue relationship: part_of UBERON:0001555 ! digestive tract [Term] id: UBERON:0006677 name: surface of epithelium synonym: "epithelium surface" EXACT [FMA:70997] xref: FMA:70997 is_a: UBERON:0000015 ! implied link automatically realized ! anatomical boundary relationship: adjacent_to UBERON:0000483 intersection_of: UBERON:0000015 ! anatomical boundary intersection_of: adjacent_to UBERON:0000483 ! epithelium [Term] id: UBERON:0006678 name: foramen secundum def: "a foramen in the septum primum." [Wikipedia:Foramen_secundum] synonym: "ostium secundum" EXACT [SCTID:308854001] xref: EHDAA2:0001828 xref: EMAPA:17863 xref: FMA:71105 xref: ncithesaurus:Foramen_Secundum xref: OG:0001471 xref: SCTID:308854001 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004111 ! anatomical conduit is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure disjoint_from: UBERON:0004754 ! foramen ovale of heart relationship: part_of UBERON:0004154 {source="EHDAA2"} ! septum primum [Term] id: UBERON:0006679 name: carina tracheae def: "In anatomy, the carina is a cartilaginous ridge within the trachea that runs anteroposteriorly between the two primary bronchi at the site of the tracheal bifurcation at the lower end of the trachea (usually at the level of the 4th to 5th thoracic vertebrae). The mucous membrane of the carina is the most sensitive area of the trachea and larynx for triggering a cough reflex. Widening and distortion of the carina is a serious sign because it usually indicates carcinoma of the lymph nodes around the region where the trachea divides. Tracheobronchial injury, an injury to the airways, occurs within 2.5 cm of the carina 40b80% of the time." [Wikipedia:Carina_of_trachea] synonym: "bifurcation of the trachea" RELATED [Wikipedia:Carina_of_trachea] synonym: "Carina" EXACT [FMA:7465] synonym: "carina %28anatomy%29" RELATED [Wikipedia:Carina_of_trachea] synonym: "carina of trachea" RELATED [Wikipedia:Carina_of_trachea] synonym: "Tracheal carina" EXACT [FMA:7465] xref: EMAPA:18407 xref: FMA:7465 xref: ncithesaurus:Carina xref: SCTID:181214003 is_a: UBERON:0002418 ! cartilage tissue [Term] id: UBERON:0006680 name: trachealis def: "A smooth muscle tissue that bridges the gap between free ends of C-shaped cartilages at the posterior border of the trachea, adjacent to the esophagus. A primary function of the trachealis is to constrict the windpipe, allowing for higher velocity of air in the windpipe during coughing[WP, modified]." [Wikipedia:Trachealis_muscle] synonym: "Tracheal muscle" EXACT [FMA:7466] synonym: "Trachealis muscle" EXACT [FMA:7466] xref: EMAPA:19193 xref: FMA:7466 is_a: UBERON:0001135 ! smooth muscle tissue is_a: UBERON:0003387 ! implied link automatically realized ! smooth muscle of trachea relationship: part_of UBERON:0003387 ! smooth muscle of trachea [Term] id: UBERON:0006681 name: interthalamic adhesion synonym: "Interthalamic connection" EXACT [FMA:74869] synonym: "Middle commissure" EXACT [FMA:74869] xref: EMAPA:18546 xref: FMA:74869 is_a: UBERON:0001020 ! commissure [Term] id: UBERON:0006682 name: hypoglossal canal xref: EMAPA:19012 xref: FMA:75370 xref: SCTID:139380001 is_a: UBERON:0004111 ! anatomical conduit [Term] id: UBERON:0006683 name: posterior fontanelle xref: EMAPA:19200 xref: FMA:75440 is_a: UBERON:0002221 ! fontanelle [Term] id: UBERON:0006684 name: sphenoidal fontanelle xref: EMAPA:19229 xref: FMA:75441 is_a: UBERON:0002221 ! fontanelle [Term] id: UBERON:0006685 name: pharyngeal tubercle xref: EMAPA:19250 xref: FMA:75746 is_a: UBERON:0005813 ! tubercle [Term] id: UBERON:0006686 name: spinal vein synonym: "Spinal vein" EXACT [FMA:76735] synonym: "vena spinalis" EXACT [FMA:76735, FMA:TA] xref: EMAPA:18255 xref: FMA:76735 xref: SCTID:181376008 is_a: UBERON:0001638 ! implied link automatically realized ! vein is_a: UBERON:0004258 ! implied link automatically realized ! back blood vessel relationship: part_of UBERON:0001130 intersection_of: UBERON:0001638 ! vein intersection_of: part_of UBERON:0001130 ! vertebral column [Term] id: UBERON:0006687 name: median sacral vein xref: EMAPA:26064 xref: FMA:77168 is_a: UBERON:0001638 ! vein relationship: tributary_of UBERON:0001317 {source="FMA/obol"} ! internal iliac vein [Term] id: UBERON:0006688 name: sublingual caruncle def: "The sublingual caruncle is a site on either side of the frenulum linguae on the sublingual surface of the tongue. There it denotes the site at which the submandibular gland empties into the oral cavity." [Wikipedia:Sublingual_caruncle] xref: EMAPA:18961 xref: FMA:77273 xref: SCTID:85139009 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001723 ! tongue [Term] id: UBERON:0006689 name: frenulum of tongue def: "The frenulum of tongue (or lingual frenulum) is the frenulum of the tongue, a small fold of mucous membrane extending from the floor of the mouth to the midline of the underside of the tongue." [Wikipedia:Frenulum_of_tongue] synonym: "frenulum lingu%c3%a6" RELATED [Wikipedia:Frenulum_of_tongue] synonym: "frenulum linguae" RELATED [Wikipedia:Frenulum_of_tongue] synonym: "frenulum of the tongue" RELATED [Wikipedia:Frenulum_of_tongue] synonym: "lingual frenulum" RELATED [Wikipedia:Frenulum_of_tongue] synonym: "lingual frenum" RELATED [Wikipedia:Frenulum_of_tongue] synonym: "tongue frenulum" EXACT [FMA:54659] xref: EMAPA:18656 xref: EMAPA:18874 xref: FMA:54659 is_a: UBERON:0000344 ! mucosa is_a: UBERON:0005020 ! implied link automatically realized ! mucosa of tongue relationship: part_of UBERON:0001723 ! tongue [Term] id: UBERON:0006690 name: deep dorsal vein of clitoris xref: EMAPA:19218 xref: FMA:77504 xref: SCTID:25834009 is_a: UBERON:0001638 ! vein is_a: UBERON:0003480 ! implied link automatically realized ! vein of clitoris relationship: part_of UBERON:0002411 ! clitoris relationship: tributary_of UBERON:0001317 {source="FMA/obol"} ! internal iliac vein [Term] id: UBERON:0006691 name: tentorium cerebelli def: "The tentorium cerebelli or cerebellar tentorium is an extension of the dura mater that separates the cerebellum from the inferior portion of the occipital lobes." [Wikipedia:Tentorium_cerebelli] synonym: "Cerebellar tentorium" EXACT [FMA:83966] synonym: "infratentorial neoplasms" RELATED [Wikipedia:Tentorium_cerebelli] synonym: "supratentorial neoplasms" RELATED [Wikipedia:Tentorium_cerebelli] xref: EMAPA:18210 xref: FMA:83966 xref: ncithesaurus:Tentorium_Cerebelli xref: OG:0001298 xref: SCTID:244428008 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0002363 ! dura mater [Term] id: UBERON:0006692 name: vertebral canal def: "The spinal canal (or vertebral canal or spinal cavity) is the space in vertebrae through which the spinal cord passes. It is a process of the dorsal human body cavity. This canal is enclosed within the vertebral foramen of the vertebrae. In the intervertebral spaces, the canal is protected by the ligamentum flavum posteriorly and the posterior longitudinal ligament anteriorly. The outermost layer of the meninges, the dura mater, is closely associated with the arachnoid which in turn is loosely connected to the innermost layer of the meninges, the pia mater. The meninges divide the spinal canal into the epidural space and the subarachnoid space. The pia mater is closely attached to the spinal cord. A subdural space is generally only present due to trauma and/or pathological situations. The subarachnoid space is filled with cerebrospinal fluid and contains the vessels that supply the spinal cord, namely the anterior spinal artery and the paired posterior spinal arteries, accompanied by a corresponding spinal veins. The spinal arteries form anastomoses known as the vasocorona of the spinal cord. The epidural space contains loose fatty tissue, and a network of large, thin-walled blood vessels called the anterior vertebral venous plexus and the posterior vertebral venous plexus The spinal canal was first described by Jean Fernel." [Wikipedia:Spinal_canal] comment: todo - check neural vs vertebral cabal synonym: "foramen vertebrale" RELATED [AAO:0000693] synonym: "neural canal" RELATED [AAO:0000693] synonym: "spinal canal" RELATED [AAO:0000693] synonym: "spinal cavity" RELATED [Wikipedia:Spinal_canal] synonym: "vertebral canal" RELATED [Wikipedia:Spinal_canal] xref: AAO:0000693 xref: EMAPA:25440 xref: EMAPA:25448 xref: EMAPA:25456 xref: EMAPA:25464 xref: EMAPA:25472 xref: EMAPA:25480 xref: EMAPA:25488 xref: EMAPA:25496 xref: EMAPA:25504 xref: EMAPA:25512 xref: EMAPA:25520 xref: EMAPA:25528 xref: EMAPA:25536 xref: EMAPA:25544 xref: EMAPA:25552 xref: EMAPA:25560 xref: EMAPA:25568 xref: EMAPA:25576 xref: EMAPA:25584 xref: EMAPA:25592 xref: EMAPA:25600 xref: EMAPA:25608 xref: EMAPA:25616 xref: EMAPA:25624 xref: EMAPA:25632 xref: EMAPA:25640 xref: EMAPA:25648 xref: EMAPA:25656 xref: EMAPA:25664 xref: EMAPA:25672 xref: EMAPA:25680 xref: EMAPA:25688 xref: EMAPA:25731 xref: EMAPA:25738 xref: EMAPA:25745 xref: EMAPA:25752 xref: EMAPA:25759 xref: EMAPA:26521 xref: EMAPA:26537 xref: FMA:9680 xref: GAID:242 xref: ncithesaurus:Vertebral_Canal is_a: UBERON:0004111 ! anatomical conduit is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001130 ! vertebral column relationship: surrounds UBERON:0002240 ! spinal cord [Term] id: UBERON:0006693 name: protein-based cuticle def: "An example of this is found in Caenorhabditis elegans" [GO:0007592] is_a: UBERON:0001002 ! cuticle [Term] id: UBERON:0006694 name: cerebellum vasculature is_a: UBERON:0002049 ! vasculature is_a: UBERON:0002946 ! implied link automatically realized ! regional part of cerebellum is_a: UBERON:0005284 ! implied link automatically realized ! brain vasculature relationship: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0006695 name: mammillary axonal complex def: "The mammillary axonal complex is formed by the axons from the lateral, medial mammillary and the dorsal premammillary nuclei which share a branching pattern. Every neuron gives off one axonal stem that bifurcates into 2 branches. One of the branches is directed dorsally to the thalamus and another caudally to the midbrain[GO]." [GO:0061373] is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0002206 ! mammillary body [Term] id: UBERON:0006696 name: mammillothalamic axonal tract def: "The mammillothalamic tract is the collection of axons that connects the two major subdivisions of the diencephalon (hypothalamus and thalamus) and closes the diencephalic circuit[GO]." [GO:0061374] is_a: UBERON:0001018 ! axon tract relationship: continuous_with UBERON:0001897 ! thalamus relationship: continuous_with UBERON:0001898 ! hypothalamus relationship: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0006697 name: mammillotectal axonal tract def: "The mammillotectal tract is the collection of axons that connects the ventral diencephalon to the superior colliculus." [GO:0061375] is_a: UBERON:0001018 ! axon tract relationship: continuous_with UBERON:0001894 ! diencephalon relationship: continuous_with UBERON:0001945 ! superior colliculus [Term] id: UBERON:0006698 name: mammillotegmental axonal tract def: " The mammillotegmental tract is the collection of axons that connects the ventral diencephalon to the tegmentum and pons" [GO:0061376] is_a: UBERON:0001018 ! axon tract relationship: continuous_with UBERON:0000988 ! pons relationship: continuous_with UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0006699 name: foramen caecum of tongue def: "The dorsum of the tongue is convex and marked by a median sulcus, which divides it into symmetrical halves; this sulcus ends behind, about 2.5 cm from the root of the organ, in a depression, the foramen cecum, from which a shallow groove, the sulcus terminalis, runs lateral and anterior on either side to the margin of the tongue. The foramen cecum is the point of attachment of the thyroglossal duct and is formed during the embryological descent of the thyroid gland." [Wikipedia:Foramen_cecum_%28tongue%29] comment: consider merging with FC of thyroid synonym: "foramen cecum of tongue" EXACT [FMA:54828] synonym: "foramen of morgagni" EXACT [FMA:54828] synonym: "morand's foramen" EXACT [FMA:54828] xref: FMA:54828 xref: SCTID:368738001 is_a: UBERON:0000061 ! anatomical structure relationship: develops_from UBERON:0002539 ! pharyngeal arch [Term] id: UBERON:0006713 name: foramen cecum of frontal bone def: "The frontal crest of the frontal bone ends below in a small notch which is converted into a foramen, the foramen cecum, by articulation with the ethmoid. This foramen varies in size in different subjects, and is frequently impervious; when open, it transmits a vein from the nose to the superior sagittal sinus. This has clinical importance in that infections of the nose and nearby areas can be transmitted to the meninges and brain from what is known as the danger triangle of the face." [Wikipedia:Foramen_cecum_%28frontal_bone%29] comment: todo - check if this is what the FMA ID really denotes xref: FMA:57443 is_a: UBERON:0005744 ! cranial conduit [Term] id: UBERON:0006714 name: tibiofibula def: "Paired, endochondral bones formed by the fusion of the tibia and fibula. They form the shanks, extending from the knees to the ankles." [AAO:Maglia_et_al_2007] synonym: "os cruris" RELATED [AAO:0000902] synonym: "tibia-fibula" EXACT [XAO:0003213] synonym: "tibiofibula" EXACT [] xref: AAO:0000902 xref: XAO:0003213 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004251 ! implied link automatically realized ! lower leg bone relationship: has_fused_element UBERON:0000979 ! tibia relationship: has_fused_element UBERON:0001446 ! fibula relationship: part_of UBERON:0001441 ! hindlimb skeleton relationship: part_of UBERON:0003823 ! hindlimb zeugopod [Term] id: UBERON:0006715 name: radio-ulna def: "Paired, long bones of endochondral origin formed by the fusion of the radius and ulna." [AAO:Maglia_et_al_2007] synonym: "radioulna" EXACT [XAO:0003209] synonym: "radius-ulna" EXACT [XAO:0003209] xref: AAO:0000901 xref: XAO:0003209 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0008962 ! implied link automatically realized ! forelimb bone relationship: has_fused_element UBERON:0001423 ! radius relationship: has_fused_element UBERON:0001424 ! ulna relationship: part_of UBERON:0001440 ! forelimb skeleton [Term] id: UBERON:0006716 name: mesopodium def: "The third segment of the limb, including either the wrist segment (carpus) or the ankle segment (tarsus)" [MA:th, Wikipedia:Carpus_and_tarsus_of_land_vertebrates] synonym: "carpus/tarsus" EXACT [] is_a: UBERON:0002529 ! limb segment relationship: part_of UBERON:0002470 {source="MA:th"} ! autopod [Term] id: UBERON:0006717 name: skeleton of autopod is_a: UBERON:0004381 ! implied link automatically realized ! skeleton of limb relationship: part_of UBERON:0002470 intersection_of: UBERON:0000075 ! subdivision of skeletal system intersection_of: part_of UBERON:0002470 ! autopod [Term] id: UBERON:0006718 name: medial pterygoid muscle def: "The medial pterygoid (or internal pterygoid muscle), is a thick, quadrilateral muscle of mastication. The mandibular branch of the fifth cranial nerve, the trigeminal nerve, innervates the medial pterygoid muscle." [Wikipedia:Medial_pterygoid_muscle] synonym: "internal pterygoid" RELATED [Wikipedia:Medial_pterygoid_muscle] synonym: "medial pteregoid" RELATED [Wikipedia:Medial_pterygoid_muscle] synonym: "pterygoid medialis" EXACT [MA:0002361] synonym: "pterygoidei internus" RELATED [Wikipedia:Medial_pterygoid_muscle] synonym: "pterygoideus internus" RELATED [Wikipedia:Medial_pterygoid_muscle] synonym: "pterygoideus medial" RELATED [Wikipedia:Medial_pterygoid_muscle] xref: FMA:49011 xref: MA:0002361 xref: SCTID:244771003 is_a: UBERON:0006720 ! pterygoid muscle [Term] id: UBERON:0006719 name: lateral pterygoid muscle def: "The lateral pterygoid (or external pterygoid) is a muscle of mastication with two heads." [Wikipedia:Lateral_pterygoid_muscle] synonym: "external pterygoid muscle" RELATED [Wikipedia:Lateral_pterygoid_muscle] synonym: "lateral pteregoid" RELATED [Wikipedia:Lateral_pterygoid_muscle] synonym: "lateral pteregoid muscle" RELATED [Wikipedia:Lateral_pterygoid_muscle] synonym: "lateral pterygoid" RELATED [Wikipedia:Lateral_pterygoid_muscle] synonym: "lateral pterygoid" EXACT [FMA:49015] synonym: "musculus pterygoides lateralis" EXACT [FMA:49015] synonym: "pterygoid lateralis" EXACT [MA:0002360] synonym: "pterygoideus externus" RELATED [Wikipedia:Lateral_pterygoid_muscle] synonym: "pterygoideus externus muscle" RELATED [Wikipedia:Lateral_pterygoid_muscle] synonym: "pterygoideus lateral" RELATED [Wikipedia:Lateral_pterygoid_muscle] xref: EMAPA:25140 xref: FMA:49015 xref: MA:0002360 xref: ncithesaurus:External_Pterygoid_Muscle xref: SCTID:244772005 is_a: UBERON:0006720 ! pterygoid muscle [Term] id: UBERON:0006720 name: pterygoid muscle xref: EMAPA:25139 xref: GAID:147 xref: MESH:A.02.633.567.600.700 xref: SCTID:244770002 is_a: UBERON:0003681 ! masticatory muscle [Term] id: UBERON:0006721 name: alisphenoid bone synonym: "ala major (os sphenoidale)" EXACT [FMA:52868] synonym: "alisphenoid bone" EXACT [MA:0002772] synonym: "greater wing of sphenoid bone" RELATED [MA:0002772] synonym: "greater wing of sphenoidal bone" EXACT [FMA:52868] xref: FMA:52868 xref: MA:0002772 xref: SCTID:361298007 is_a: UBERON:0003465 {source="MA"} ! chondrocranium bone relationship: develops_from UBERON:0009637 {source="ISBN10:1588903958"} ! alisphenoid center relationship: part_of UBERON:0001677 {source="MA"} ! sphenoid bone [Term] id: UBERON:0006722 name: manubrium of malleus def: "The handle of the malleus; the portion that extends downward, inward, and backward from the neck of the malleus; it is embedded throughout its length in the tympanic membrane." [http://www.mondofacto.com/facts/dictionary?manubrium+of+malleus] synonym: "handle of malleus" RELATED [MA:0002985] synonym: "malleal manubrium" RELATED [MA:0002985] synonym: "malleus handle" RELATED [MA:0002985] synonym: "malleus handle" EXACT [FMA:52760] synonym: "malleus manubrium" RELATED [MA:0002985] synonym: "manubrium mallei" RELATED [MA:0002985] synonym: "manubrium of malleus" RELATED [MA:0002985] synonym: "manubrium of malleus" EXACT [FMA:52760] xref: FMA:52760 xref: MA:0002985 xref: SCTID:264091009 is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001689 ! malleus [Term] id: UBERON:0006723 name: cochlear modiolus def: "a conical shaped central axis in the cochlea. It consists of spongy bone and the cochlea turns approximately 2.5 times around it. The spiral ganglion is situated inside it." [Wikipedia:Modiolus_(cochlea)] subset: organ_slim synonym: "cochlea modiolus" EXACT [FMA:61278] synonym: "modiolus" EXACT [MA:0001182] synonym: "modiolus of cochlea" EXACT [FMA:61278] xref: BTO:0001693 xref: FMA:61278 xref: MA:0001182 xref: ncithesaurus:Modiolus xref: SCTID:361314007 is_a: UBERON:0000032 ! implied link automatically realized ! cranial structure is_a: UBERON:0005913 ! zone of bone organ is_a: UBERON:0006585 ! implied link automatically realized ! vestibular organ relationship: part_of UBERON:0001844 ! cochlea [Term] id: UBERON:0006724 name: osseus spiral lamina synonym: "lamina modioli cochleae" EXACT [FMA:77710, FMA:TA] synonym: "lamina of modiolus cochleae" EXACT [FMA:77710] synonym: "lamina of modiolus of cochlea" EXACT [FMA:77710] synonym: "osseous spiral lamina of cochlea" EXACT [FMA:77710] xref: FMA:77710 xref: MA:0001184 is_a: UBERON:0005913 ! zone of bone organ [Term] id: UBERON:0006725 name: spiral ligament comment: Note that this is not classified as a ligament in FMA synonym: "spiral ligament of cochlear duct" EXACT [FMA:77834] xref: FMA:77834 xref: MA:0001192 is_a: UBERON:0000211 ! ligament is_a: UBERON:0003566 ! implied link automatically realized ! head connective tissue is_a: UBERON:0008846 ! implied link automatically realized ! skeletal ligament relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth [Term] id: UBERON:0006726 name: outer canthus comment: see also FMA:59321 synonym: "lateral angle of eye" RELATED [FMA:59321] synonym: "lateral canthus" RELATED [MA:0001264] synonym: "lateral canthus of eye" EXACT [FMA:59321] synonym: "lateral palpebral commissure" EXACT [FMA:59315] xref: EHDAA:9039 xref: EHDAA2:0000910 xref: FMA:59315 xref: MA:0001264 xref: ncithesaurus:Outer_Canthus is_a: UBERON:0006742 ! canthus [Term] id: UBERON:0006727 name: liver left lateral lobe synonym: "lateral segment of left lobe of liver" EXACT [FMA:14501] synonym: "lateral segment of liver" EXACT [FMA:14501] synonym: "segmentum laterale (lobus hepatis sinister)" EXACT [FMA:14501] xref: FMA:14501 xref: MA:0001641 xref: SCTID:271288003 is_a: UBERON:0001115 ! left lobe of liver [Term] id: UBERON:0006728 name: liver left medial lobe synonym: "medial segment of left lobe of liver" EXACT [FMA:14500] synonym: "medial segment of liver" EXACT [FMA:14500] synonym: "segmentum mediale (lobus hepatis sinister)" EXACT [FMA:14500] xref: FMA:14500 xref: MA:0001642 xref: SCTID:271085007 is_a: UBERON:0001115 ! left lobe of liver [Term] id: UBERON:0006729 name: liver perisinusoidal space synonym: "Disse's space" EXACT [FMA:63162] synonym: "hepatic perisinusoidal space" EXACT [FMA:63162] synonym: "perisinusoidal space of Disse" EXACT [FMA:63162] synonym: "space of Disse" EXACT [FMA:63162] xref: FMA:63162 xref: MA:0002497 xref: SCTID:17779003 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0004647 ! liver lobule [Term] id: UBERON:0006742 name: canthus def: "Canthus (pl. canthi, palpebral commissures) is either corner of the eye where the upper and lower eyelids meet. The bicanthal plane is the transversal plane linking both canthi and defines the upper boundary of the midface." [Wikipedia:Canthus] synonym: "bicanthal" RELATED [Wikipedia:Canthus] synonym: "bicanthal plane" RELATED [Wikipedia:Canthus] synonym: "canthi" RELATED [Wikipedia:Canthus] synonym: "canthoplasty" RELATED [Wikipedia:Canthus] synonym: "canthorum" RELATED [Wikipedia:Canthus] synonym: "canthus %28anatomy%29" RELATED [Wikipedia:Canthus] synonym: "lateral palpebral commissure" RELATED [Wikipedia:Canthus] synonym: "medial palpebral commissure" RELATED [Wikipedia:Canthus] synonym: "palpebral commissure" EXACT [FMA:59222] synonym: "palpebral commissures" RELATED [Wikipedia:Canthus] xref: FMA:59222 xref: SCTID:181145006 is_a: UBERON:0000061 ! anatomical structure relationship: adjacent_to UBERON:0001712 ! upper eyelid relationship: adjacent_to UBERON:0001713 ! lower eyelid [Term] id: UBERON:0006743 name: paleodentate of dentate nucleus synonym: "paleodentate of dentate nucleus" EXACT [NIF_GrossAnatomy:birnlex_1490] synonym: "paleodentate portion of dentate nucleus" EXACT [FMA:72540] synonym: "PDT" EXACT [NIF_GrossAnatomy:birnlex_1490] xref: FMA:72540 xref: NIF_GrossAnatomy:birnlex_1490 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002946 ! regional part of cerebellum is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0002132 ! dentate nucleus [Term] id: UBERON:0006749 name: superior parathyroid gland subset: organ_slim xref: EHDAA:3870 xref: EHDAA:9135 xref: EHDAA2:0001954 xref: FMA:55558 xref: ncithesaurus:Superior_Parathyroid_Gland xref: SCTID:245540001 is_a: UBERON:0001132 ! parathyroid gland [Term] id: UBERON:0006755 name: inferior parathyroid gland subset: organ_slim xref: EHDAA:3864 xref: EHDAA:9127 xref: EHDAA2:0000821 xref: FMA:55559 xref: ncithesaurus:Inferior_Parathyroid_Gland xref: SCTID:245542009 is_a: UBERON:0001132 ! parathyroid gland relationship: develops_from UBERON:0007124 {source="http://emedicine.medscape.com/article/845125-overview"} ! pharyngeal pouch 3 [Term] id: UBERON:0006756 name: tuberculum impar def: "During the third week of embryological development there appears, immediately behind the ventral ends of the two halves of the mandibular arch, a rounded swelling named the tuberculum impar, which was described by His as undergoing enlargement to form the buccal part of the tongue. More recent researches, however, show that this part of the tongue is mainly, if not entirely, developed from a pair of lateral swellings which rise from the inner surface of the mandibular arch and meet in the middle line. The site of their meeting remains post-embryonically as the median sulcus of the tongue. The tuberculum impar is said to form the central part of the tongue immediately in front of the foramen cecum, but Hammar insists that it is purely a transitory structure and forms no part of the adult tongue[WP, Gray's]." [Wikipedia:Tuberculum_impar] comment: The thyroid initially develops caudal to the tuberculum impar . This embryonic swelling arises from the first pharyngeal arch and occurs midline on the floor of the developing pharynx, eventually helping form the tongue as the 2 lateral lingual swellings overgrow it. [http://emedicine.medscape.com/article/845125-overview] synonym: "median lingual swelling" EXACT [EHDAA2:0001081] synonym: "median tongue bud" EXACT [http://emedicine.medscape.com/article/845125-overview] xref: EHDAA2:0001081 xref: EMAPA:17187 xref: OG:0000730 xref: SCTID:308821003 is_a: UBERON:0005423 ! developing anatomical structure relationship: develops_from UBERON:0004362 ! mandibular arch relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0006260 ! lingual swelling [Term] id: UBERON:0006757 name: lateral lingual swelling def: "During the third week there appears, immediately behind the ventral ends of the two halves of the mandibular arch, a rounded swelling named the tuberculum impar, which was described by His as undergoing enlargement to form the buccal part of the tongue. More recent researches, however, show that this part of the tongue is mainly, if not entirely, developed from a pair of lateral swellings (or distal tongue bud) which rise from the inner surface of the mandibular arch and meet in the middle line." [Wikipedia:Lateral_lingual_swelling] synonym: "lateral swellings" RELATED [Wikipedia:Lateral_lingual_swelling] synonym: "tuberculum laterale" RELATED [Wikipedia:Lateral_lingual_swelling] xref: EHDAA2:0000911 xref: EMAPA:17189 xref: OG:0000731 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0006260 ! lingual swelling [Term] id: UBERON:0006761 name: corneo-scleral junction def: "The corneal limbus is the border of the cornea and the sclera (the white of the eye). The limbus is a common site for the occurrence of corneal epithelial neoplasm. Limbus contains radially oriented fibrovascular ridges known as the palisades of Vogt that may harbour a stem cell population[WP]. An annular transitional zone, approximately 1 mm wide, between the cornea and the bulbar conjunctiva and sclera. It is highly vascular and is involved in the metabolism of the cornea. It is ophthalmologically significant in that it appears on the outer surface of the eyeball as a slight furrow, marking the line between the clear cornea and the sclera. (Dictionary of Visual Science, 3d ed)[MeSH]" [Wikipedia:Corneal_limbus] subset: vertebrate_core synonym: "corneal limbus" RELATED [GAID:896] synonym: "corneal limbus" EXACT [FMA:58342] synonym: "corneoscleral junction" RELATED [GAID:896] synonym: "limbus corneae" RELATED [Wikipedia:Corneal_limbus] synonym: "sclerocorneal junction" EXACT [FMA:58342] synonym: "sclerocorneal limbus" RELATED [GAID:896] xref: EFO:0001403 xref: FMA:58342 xref: GAID:896 xref: MESH:A.09.371.060.217.659 xref: SCTID:63716004 xref: ZFA:0005570 is_a: UBERON:0000015 ! implied link automatically realized ! anatomical boundary relationship: adjacent_to UBERON:0000964 relationship: adjacent_to UBERON:0001773 intersection_of: UBERON:0000015 ! anatomical boundary intersection_of: adjacent_to UBERON:0000964 ! cornea intersection_of: adjacent_to UBERON:0001773 ! sclera [Term] id: UBERON:0006762 name: suspensory ligament of lens def: "The zonule of Zinn (Zinn's membrane, ciliary zonule) is a ring of fibrous strands connecting the ciliary body with the crystalline lens of the eye. The zonule of Zinn is split into two layers: a thin layer, which lines the hyaloid fossa, and a thicker layer, which is a collection of zonular fibers. Together, the fibers are known as the suspensory ligament of the lens[WP]. Modified or toughened vitreous that suspend the lens at the equator to the non-pigmented epithelium of the ciliary zone. In zebrafish, dorsal zonules are thickened as compared to ventral zonules. In both dorsal and ventral regions, these fibers delimit the vitreous body aqueous humor boundary[ZFA]." [Wikipedia:Zonule_of_Zinn] subset: vertebrate_core synonym: "ciliary zonule" RELATED [Wikipedia:Zonule_of_Zinn] synonym: "ciliary zonule" EXACT [FMA:58838] synonym: "suspensory ligament of the lens" RELATED [Wikipedia:Zonule_of_Zinn] synonym: "Zinn's membrane" EXACT [FMA:58838] synonym: "zonula" RELATED [Wikipedia:Zonule_of_Zinn] synonym: "zonula ciliaris" RELATED [Wikipedia:Zonule_of_Zinn] synonym: "zonular fiber" RELATED [Wikipedia:Zonule_of_Zinn] synonym: "zonule" RELATED [Wikipedia:Zonule_of_Zinn] synonym: "zonule of Zinn" EXACT [FMA:58838] synonym: "zonules" EXACT PLURAL [ZFA:0005573] xref: FMA:58838 xref: SCTID:362524000 xref: ZFA:0005573 is_a: UBERON:0000463 {source="ZFA"} ! portion of organism substance is_a: UBERON:0003566 ! implied link automatically realized ! head connective tissue is_a: UBERON:0008841 {source="Obol"} ! suspensory ligament relationship: continuous_with UBERON:0000965 ! lens relationship: continuous_with UBERON:0001775 ! ciliary body relationship: develops_from UBERON:0001797 {source="ZFA"} ! vitreous humor relationship: part_of UBERON:0000019 {source="FMA"} ! camera-type eye [Term] id: UBERON:0006763 name: epithelium of conjunctiva synonym: "conjunctiva epithelium" EXACT [FMA:62131] synonym: "conjunctival epithelium" EXACT [BTO:0005131] xref: BTO:0005131 xref: EFO:0001916 xref: FMA:62131 xref: ncithesaurus:Conjunctival_Epithelium is_a: UBERON:0000486 ! multilaminar epithelium is_a: UBERON:0007625 ! implied link automatically realized ! pigment epithelium of eye relationship: part_of UBERON:0001811 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001811 ! conjunctiva relationship: part_of UBERON:0001811 {source="BTO"} ! conjunctiva [Term] id: UBERON:0006764 name: anterior communicating artery def: "In human anatomy, the anterior communicating artery is a blood vessel of the brain that connects the left and right anterior cerebral arteries. The anterior communicating artery connects the two anterior cerebral arteries across the commencement of the longitudinal fissure. Sometimes this vessel is wanting, the two arteries joining together to form a single trunk, which afterward divides; or it may be wholly, or partially, divided into two. Its length averages about 4 mm, but varies greatly. It gives off some of the anteromedial ganglionic vessels, but these are principally derived from the anterior cerebral artery. It is part of the cerebral arterial circle, also known as the circle of Willis." [Wikipedia:Anterior_communicating_artery] xref: EHDAA2:0000586 xref: EMAPA:18599 xref: FMA:50169 xref: ncithesaurus:Anterior_Communicating_Artery xref: SCTID:181311009 is_a: UBERON:0006347 ! communicating artery relationship: branch_of UBERON:0001624 ! anterior cerebral artery relationship: part_of UBERON:0003709 ! circle of Willis [Term] id: UBERON:0006765 name: left anterior vena cava xref: EMAPA:18418 is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0001585 ! anterior vena cava [Term] id: UBERON:0006766 name: right anterior vena cava comment: The mouse has both left and right anterior vena cava. adult humans only have a right. Postnatally the left regresses and becomes non-functional (Wessels and Sedmera 2003). Note that FMA:4720 is equivalent to both anterior vena cava and right anterior vena cava xref: EMAPA:18419 xref: FMA:4720 is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0001585 ! anterior vena cava [Term] id: UBERON:0006767 name: head of femur def: "The hemispheric articular surface at the upper extremity of the thigh bone[Stedman, 26th ed]. The femur head is the highest part of the thigh bone. It is supported by the neck of the femur. The head is globular and forms rather more than a hemisphere, is directed upward, medialward, and a little forward, the greater part of its convexity being above and in front. Its surface is smooth, coated with cartilage in the fresh state, except over an ovoid depression, the fovea capitis femoris, which is situated a little below and behind the center of the head, and gives attachment to the ligament of head of femur. If there is a fracture of the neck of the femur, the blood supply through the ligament becomes crucial. In orthopedic surgery, the head of the femur is important because it can undergo avascular necrosis and consequent osteochondritis dissecans. The head is removed in total hip replacement surgery [WP]." [MESH:A.02.835.232.500.247.343, Wikipedia:Femur_head] synonym: "acetabular head" EXACT [AAO:0000892] synonym: "capital femoral epiphysis" RELATED [http://medical-dictionary.thefreedictionary.com/capital+femoral+epiphysis] synonym: "caput femoris" RELATED [AAO:0000892, Wikipedia:Femur_head] synonym: "femoral head" EXACT [FMA:32851] synonym: "femur head" RELATED [MESH:A.02.835.232.500.247.343] xref: AAO:0000892 xref: FMA:32851 xref: galen:FemoralHead xref: MESH:A.02.835.232.500.247.343 xref: ncithesaurus:Head_of_the_Femur xref: SCTID:361791000 is_a: UBERON:0005055 ! implied link automatically realized ! zone of long bone is_a: UBERON:0005913 ! zone of bone organ relationship: adjacent_to UBERON:0001269 ! acetabular part of hip bone relationship: part_of UBERON:0004412 ! proximal epiphysis of femur [Term] id: UBERON:0006768 name: epiphyseal line synonym: "epiphysial junction" EXACT [FMA:9918] synonym: "line of bony union" EXACT [FMA:9918] xref: FMA:9918 xref: SCTID:333108008 is_a: UBERON:0000982 ! skeletal joint relationship: develops_from UBERON:0002516 ! epiphyseal plate relationship: part_of UBERON:0001438 ! metaphysis [Term] id: UBERON:0006770 name: apophysis xref: FMA:75428 xref: SCTID:65000005 is_a: UBERON:0004530 ! bony projection [Term] id: UBERON:0006771 name: long bone epiphyseal plate proliferative zone def: "germinal layer of the epiphyseal plate where cells are actively dividing as well as producing extracellular matrix[MP]." [MP:0003662] comment: In this zone, chondrocytes undergo rapid mitosis, forming distinctive looking stacks[WP] synonym: "epiphyseal plate proliferative zone" EXACT [] synonym: "zone of proliferation" RELATED [MA:0002976] xref: MA:0002976 is_a: UBERON:0006775 ! zone of epiphyseal plate [Term] id: UBERON:0006772 name: long bone epiphyseal plate hypertrophic zone def: "the layer of the epiphyseal plate of a long bone where chondrocytes mature and enlarge[MP]." [https://sourceforge.net/tracker/?func=detail&aid=3442184&group_id=76834&atid=1205376, MP:0000165] comment: note that there is also MA:0002849 synonym: "epiphyseal plate hypertrophic zone" EXACT [] synonym: "hypertrophic chondrocyte zone" RELATED [MP:0000165] synonym: "maturation zone" RELATED [MA:0002977] synonym: "zone of hypertrophic chondrocytes" RELATED [MA:0002977] xref: MA:0002977 is_a: UBERON:0006775 ! zone of epiphyseal plate [Term] id: UBERON:0006773 name: long bone epiphyseal plate ossification zone def: "layer of the epiphyseal plate where new bone matrix is deposited[MP]." [MP:0006399] synonym: "epiphyseal plate ossification zone" EXACT [] is_a: UBERON:0006775 ! zone of epiphyseal plate [Term] id: UBERON:0006775 name: zone of epiphyseal plate is_a: UBERON:0002418 ! cartilage tissue relationship: part_of UBERON:0002516 ! epiphyseal plate [Term] id: UBERON:0006776 name: annular epiphysis def: "secondary growth centers occurring as rings at the periphery of the superior and inferior surfaces of the vertebral body." [http://medical-dictionary.thefreedictionary.com/epiphysis] comment: note that here epiphysis means deriving from a separate ossification center synonym: "anular epiphysis" EXACT [FMA:75792] xref: FMA:75792 is_a: UBERON:0005913 ! zone of bone organ relationship: adjacent_to UBERON:0001075 ! body of vertebra [Term] id: UBERON:0006777 name: tectal plate def: "embryologic structure that is formed by two longitudinal eminences, one on each alar plate of the midbrain. These eminences become the superior colliculus and inferior colliculus ( Carpenter-1983 )]" [http://braininfo.rprc.washington.edu/centraldirectory.aspx?type=a&ID=453] comment: The term "tectal plate" (or "quadrigeminal plate") is used to describe the junction of the gray and white matter in the embryo. (NeuroNames ancil-453) synonym: "lamina quadrigemina" EXACT [FMA:77488, FMA:TA] synonym: "quadrigeminal plate" EXACT [FMA:77488] xref: FMA:77488 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0006779 name: superficial white layer of superior colliculus def: "superficial white matter layer of superior collilculus that consists mainly of axions from the optic nerve." [Wikipedia:Superior_colliculus#Neural_circuit] synonym: "lamina colliculi superioris iii" EXACT [FMA:71112, FMA:TA] synonym: "lamina III of superior colliculus" EXACT [Wikipedia:Superior_colliculus#Neural_circuit] synonym: "layer III of superior colliculus" EXACT [FMA:71112] synonym: "optic layer" EXACT [FMA:71112] synonym: "optic layer of superior colliculus" EXACT [FMA:71112] synonym: "stratum opticum colliculi superioris" EXACT [FMA:71112, FMA:TA] xref: ABA:SCop xref: FMA:71112 is_a: UBERON:0006786 ! white matter layer of superior colliculus is_a: UBERON:0006791 ! superficial layer of superior colliculus relationship: spatially_disjoint_from UBERON:0006120 {source="ABA"} ! superior colliculus superficial gray layer relationship: spatially_disjoint_from UBERON:0006780 {source="ABA"} ! zonal layer of superior colliculus [Term] id: UBERON:0006780 name: zonal layer of superior colliculus def: "a thin layer consisting of small myelinated axons together with marginal and horizontal cells." [Wikipedia:Superior_colliculus#Neural_circuit] synonym: "lamina colliculi superioris i" EXACT [FMA:72406, FMA:TA] synonym: "lamina I of superior colliculus" EXACT [Wikipedia:Superior_colliculus#Neural_circuit] synonym: "layer I of superior colliculus" EXACT [FMA:72406] synonym: "stratum zonale of superior colliculus" EXACT [FMA:72406] xref: ABA:SCzo xref: FMA:72406 is_a: UBERON:0006785 ! gray matter layer of superior colliculus is_a: UBERON:0006791 ! superficial layer of superior colliculus relationship: spatially_disjoint_from UBERON:0006120 {source="ABA"} ! superior colliculus superficial gray layer relationship: spatially_disjoint_from UBERON:0006779 {source="ABA"} ! superficial white layer of superior colliculus [Term] id: UBERON:0006782 name: stratum lemnisci of superior colliculus xref: FMA:72408 is_a: UBERON:0006785 ! gray matter layer of superior colliculus [Term] id: UBERON:0006783 name: layer of superior colliculus def: "The microstructure of the optic tectum / superior colliculus varies across species. As a general rule, there is always a clear distinction between superficial layers, which receive input primarily from the visual system and show primarily visual responses, and deeper layers, which receive many types of input and project to numerous motor-related brain areas. The distinction between these two zones is so clear and consistent that some anatomists have suggested that they should be considered separate brain structures. In mammals, neuroanatomists conventionally identify seven layers[WP]." [Wikipedia:Superior_colliculus#Neural_circuit] xref: NIF_GrossAnatomy:nlx_anat_1005033 is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0004923 ! implied link automatically realized ! organ component layer relationship: part_of UBERON:0001945 intersection_of: UBERON:0004923 ! organ component layer intersection_of: part_of UBERON:0001945 ! superior colliculus [Term] id: UBERON:0006785 name: gray matter layer of superior colliculus xref: FMA:77870 is_a: UBERON:0006783 ! layer of superior colliculus [Term] id: UBERON:0006786 name: white matter layer of superior colliculus xref: FMA:83899 xref: NIF_GrossAnatomy:birnlex_1023 is_a: UBERON:0006783 ! layer of superior colliculus [Term] id: UBERON:0006787 name: middle white layer of superior colliculus subset: vertebrate_core synonym: "intermediate white layer" EXACT [FMA:71113] synonym: "intermediate white layer of superior colliculus" EXACT [FMA:71113] synonym: "lamina colliculi superioris v" EXACT [FMA:71113, FMA:TA] synonym: "lamina V of superior colliculus" EXACT [Wikipedia:Superior_colliculus#Neural_circuit] synonym: "layer V of superior colliculus" EXACT [FMA:71113] synonym: "stratum album intermediale of superior colliculus" EXACT [Wikipedia:Superior_colliculus#Neural_circuit] synonym: "stratum medullare intermedium colliculi superioris" EXACT [FMA:71113, FMA:TA] xref: FMA:71113 xref: ZFA:0001351 is_a: UBERON:0006786 ! white matter layer of superior colliculus is_a: UBERON:0006792 ! intermediate layer of superior colliculus [Term] id: UBERON:0006788 name: middle gray layer of superior colliculus subset: vertebrate_core synonym: "intermediate gray layer" EXACT [FMA:72409] synonym: "intermediate grey layer of superior colliculus" EXACT [FMA:72409] synonym: "lamina colliculi superioris iv" EXACT [FMA:72409, FMA:TA] synonym: "lamina IV of superior colliculus" EXACT [Wikipedia:Superior_colliculus#Neural_circuit] synonym: "layer IV of superior colliculus" EXACT [FMA:72409] synonym: "stratum griseum intermediale of superior colliculus" EXACT [Wikipedia:Superior_colliculus#Neural_circuit] synonym: "stratum griseum intermedium colliculi superioris" EXACT [FMA:72409, FMA:TA] xref: FMA:72409 xref: ZFA:0001350 is_a: UBERON:0006785 ! gray matter layer of superior colliculus is_a: UBERON:0006792 ! intermediate layer of superior colliculus [Term] id: UBERON:0006789 name: deep gray layer of superior colliculus synonym: "deep grey layer of superior colliculus" EXACT [FMA:72410] synonym: "lamina colliculi superioris vi" EXACT [FMA:72410, FMA:TA] synonym: "lamina VI of superior colliculus" EXACT [Wikipedia:Superior_colliculus#Neural_circuit] synonym: "layer VI of superior colliculus" EXACT [FMA:72410] synonym: "stratum griseum profundum colliculi superioris" EXACT [FMA:72410, FMA:TA] synonym: "stratum griseum profundum of superior colliculus" EXACT [Wikipedia:Superior_colliculus#Neural_circuit] xref: FMA:72410 is_a: UBERON:0006785 ! gray matter layer of superior colliculus is_a: UBERON:0006793 ! deep layer of superior colliculus [Term] id: UBERON:0006790 name: deep white layer of superior colliculus def: "deep white matter layer of superior collilculus that consists entirely of fibers." [Wikipedia:Superior_colliculus#Neural_circuit] subset: vertebrate_core synonym: "lamina colliculi superioris vii" EXACT [FMA:72416, FMA:TA] synonym: "lamina VII of superior colliculus" EXACT [Wikipedia:Superior_colliculus#Neural_circuit] synonym: "layer VII of superior colliculus" EXACT [FMA:72416] synonym: "stratum album profundum of superior colliculus" EXACT [Wikipedia:Superior_colliculus#Neural_circuit] xref: FMA:72416 xref: ZFA:0000494 is_a: UBERON:0006786 ! white matter layer of superior colliculus is_a: UBERON:0006793 ! deep layer of superior colliculus [Term] id: UBERON:0006791 name: superficial layer of superior colliculus xref: BM:MB-Tec-SCS xref: ZFA:0000686 is_a: UBERON:0006783 ! layer of superior colliculus [Term] id: UBERON:0006792 name: intermediate layer of superior colliculus xref: BM:MB-Tec-SCI xref: ZFA:0000327 is_a: UBERON:0006783 ! implied link automatically realized ! layer of superior colliculus relationship: adjacent_to UBERON:0006791 relationship: adjacent_to UBERON:0006793 intersection_of: UBERON:0006783 ! layer of superior colliculus intersection_of: adjacent_to UBERON:0006791 ! superficial layer of superior colliculus intersection_of: adjacent_to UBERON:0006793 ! deep layer of superior colliculus [Term] id: UBERON:0006793 name: deep layer of superior colliculus xref: BM:MB-Tec-SCD is_a: UBERON:0006783 ! layer of superior colliculus [Term] id: UBERON:0006794 name: visual processing part of nervous system synonym: "optic lobe" RELATED [GAID:1233] xref: GAID:1233 is_a: UBERON:0000073 ! regional part of nervous system [Term] id: UBERON:0006795 name: arthropod optic lobe def: "A region of the adult brain that processes the visual information from the compound eyes." [FBC:gg, ISBN:978-3-11-014898-5] synonym: "optic lobe" RELATED SENSU [FBbt:00003701] xref: FBbt:00003701 is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain is_a: UBERON:0006794 ! visual processing part of nervous system relationship: part_of UBERON:0000955 ! brain [Term] id: UBERON:0006796 name: cephalopod optic lobe def: "Large lobes of the brain associated with the eyes. In octopods and some squids the optic lobes may be separated from the rest of the brain by an optic stalk of varying length. In Octopus the optic lobes contain 92 million cells compared with only 42 million in the main central mass of the brain (J. Young, 1963) ." [http://tolweb.org/accessory/Cephalopoda_Glossary?acc_id=587] synonym: "optic lobe" RELATED SENSU [] is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain is_a: UBERON:0006794 ! visual processing part of nervous system relationship: part_of UBERON:0000955 ! brain [Term] id: UBERON:0006798 name: efferent nerve def: "A group of neurons that provides a nervous signal to a tissue." [AEO:JB] xref: AEO:0000202 xref: EHDAA2:0003231 is_a: UBERON:0001021 ! nerve [Term] id: UBERON:0006799 name: glandular epithelium def: "Epithelium composed of secretory cells." [Online_Medical_Dictionary:http\://cancerweb.ncl.ac.uk/] xref: BTO:0002991 xref: ncithesaurus:Glandular_Epithelium is_a: UBERON:0000483 ! implied link automatically realized ! epithelium relationship: secretes UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0006800 name: anatomical line def: "Non-material anatomical entity of one dimension, which forms a boundary of an anatomical surface or is a modulation of an anatomical surface." [CARO:MAH] subset: upper_level xref: AAO:0010267 xref: AEO:0000008 xref: BILA:0000008 xref: CARO:0000008 xref: EHDAA2:0003008 xref: FMA:9657 xref: HAO:0000008 xref: TGMA:0001828 xref: XAO:0004003 xref: ZFA:0001689 is_a: UBERON:0000015 ! anatomical boundary disjoint_from: UBERON:0000464 ! anatomical space [Term] id: UBERON:0006801 name: head of humerus def: "Hemispherical ball located at the lower end of the humerus that stands out prominently from the surrounding structures toward the flexor surface of the forelimb and fits into the socket joint of the olecranon process." [AAO:0000838] synonym: "eminentia capitata" RELATED [AAO:0000838] synonym: "humeral head" EXACT [FMA:13304] synonym: "radial condyle" RELATED [AAO:0000838] xref: AAO:0000838 xref: FMA:13304 xref: galen:HeadOfHumerus xref: ncithesaurus:Head_of_the_Humerus xref: SCTID:181924000 is_a: UBERON:0005055 ! implied link automatically realized ! zone of long bone is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0004411 ! proximal epiphysis of humerus [Term] id: UBERON:0006802 name: acetabular rim def: "Cartilaginous ring that forms the entire acetabular margin." [AAO:0000864] xref: AAO:0000864 xref: FMA:16941 is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001269 ! acetabular part of hip bone [Term] id: UBERON:0006803 name: obturator foramen def: "The obturator foramen is the hole created by the ischium and pubis bones of the pelvis through which nerves and muscles pass." [Wikipedia:Obturator_foramen] synonym: "foramen obturatorium" EXACT [FMA:16999] xref: AAO:0000863 xref: FMA:16999 xref: ncithesaurus:Obturator_Foramen xref: SCTID:361777006 is_a: UBERON:0004111 ! anatomical conduit is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0007832 {source="AAO"} ! skeleton of pelvic girdle [Term] id: UBERON:0006804 name: reticular tissue def: "Loose connective tissue which consists of an irregular network of cells and reticular fibers and is spatially associated with myeloid and lymphoid cells. Examples: stroma of bone marrow, stroma of spleen, stroma of lymph node.[FMA]" [FMA:20116, FMA:FMA] synonym: "reticular connective tissue" EXACT [FMA:20116] synonym: "textus connectivus reticularis" EXACT [FMA:20116] xref: AAO:0000542 xref: FMA:20116 xref: SCTID:57987007 is_a: UBERON:0002384 ! connective tissue is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001135 ! smooth muscle tissue [Term] id: UBERON:0006805 name: sternal end of clavicle def: "Medial end of the clavicle, which usually lies on the ventral side of the epicoracoid cartilage, just posterior to the epicoracoid bridge." [AAO:0000812] synonym: "extremitas medialis" RELATED [AAO:0000812] synonym: "extremitas sternalis (Clavicula)" EXACT [FMA:23297] synonym: "medial end" RELATED [AAO:0000812] synonym: "medial end of clavicle" EXACT [FMA:23297] xref: AAO:0000812 xref: FMA:23297 xref: SCTID:181920009 is_a: UBERON:0005055 ! implied link automatically realized ! zone of long bone is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001105 ! clavicle [Term] id: UBERON:0006806 name: medial epicondyle of humerus def: "The medial epicondyle of the humerus, larger and more prominent than the lateral epicondyle, is directed a little backward. In birds, where the arm is somewhat rotated compared to other tetrapods, it is called ventral epicondyle of the humerus. It gives attachment to the ulnar collateral ligament of the elbow-joint, to the Pronator teres, and to a common tendon of origin of some of the Flexor muscles of the forearm. The ulnar nerve runs in a groove on the back of this epicondyle[WP]. Rounded projection at the distal head of the humerus and medial to the humeral head, which serves as a place of attachment for the flexor muscles antogonistic to those that attach to the lateral epicondyle[AAO]." [AAO:0000782, Wikipedia:Medial_epicondyle_of_the_humerus] synonym: "elbow pit" RELATED [Wikipedia:Medial_epicondyle_of_the_humerus] synonym: "epicondylus medialis (Humerus)" EXACT [FMA:23441] synonym: "epicondylus medialis humeri" RELATED [AAO:0000782] synonym: "medial epicondyle" BROAD [AAO:0000782] synonym: "medial epicondyle of humerus" RELATED [Wikipedia:Medial_epicondyle_of_the_humerus] synonym: "ulnar condyle of humerus" RELATED [http://www.termiumplus.gc.ca] synonym: "ventral epicondyle of humerus" RELATED SENSU [Wikipedia:Medial_epicondyle_of_the_humerus] xref: AAO:0000782 xref: FMA:23441 xref: SCTID:181929005 is_a: UBERON:0005055 ! implied link automatically realized ! zone of long bone is_a: UBERON:0009978 {source="FMA"} ! epicondyle relationship: part_of UBERON:0004404 {source="FMA"} ! distal epiphysis of humerus [Term] id: UBERON:0006807 name: lateral epicondyle of humerus def: "The lateral epicondyle of the humerus is a small, tuberculated eminence, curved a little forward, and giving attachment to the radial collateral ligament of the elbow-joint, and to a tendon common to the origin of the Supinator and some of the Extensor muscles. In birds, where the arm is somewhat rotated compared to other tetrapods, it is termed dorsal epicondyle of the humerus[WP]. Rounded projection at the distal head of the humerus (larger and more prominent than the lateral epicondyle) and lateral to the humeral head, which serves as a place of attachment for the mm extensor antebrachii et carpi radialis, extensor digitorum communis, and in part to the m extensor antebrachii et carpi ulnaris[AAO]." [AAO:0000758, Wikipedia:Lateral_epicondyle_of_the_humerus] synonym: "dorsal epicondyle of the humerus" RELATED SENSU [Wikipedia:Lateral_epicondyle_of_the_humerus] synonym: "epicondylus lateralis (Humerus)" EXACT [FMA:23442] synonym: "epicondylus lateralis humeri" RELATED [AAO:0000758] xref: AAO:0000758 xref: FMA:23442 xref: SCTID:181933003 is_a: UBERON:0005055 ! implied link automatically realized ! zone of long bone is_a: UBERON:0009978 {source="FMA"} ! epicondyle relationship: part_of UBERON:0004404 {source="FMA"} ! distal epiphysis of humerus [Term] id: UBERON:0006809 name: supporting connective tissue def: "Specialized connective tissue is a connective tissue, which consists of osteocytes and chondrocytes, the intercellular matrix of which is chondrified or calcified.[FMA]" [FMA:37374, FMA:FMA] comment: made obsolete because FMA:37374 is a General anatomical term rather than a true class in the FMA synonym: "specialized connective tissue" EXACT [FMA:37374] xref: AAO:0000571 xref: FMA:37374 is_obsolete: true [Term] id: UBERON:0006810 name: olecranon def: "The olecranon is a large, thick, curved bony eminence of the forearm that projects behind the elbow. It is situated at the upper (proximal) end of the ulna, one of the two bones in the forearm. When the hand faces forward the olecranon faces towards the back (posteriorly). It is bent forward at the summit so as to present a prominent lip which is received into the olecranon fossa of the humerus in extension of the forearm. Its base is contracted where it joins the body and the narrowest part of the upper end of the ulna. Its posterior surface, directed backward, is triangular, smooth, subcutaneous, and covered by a bursa. Its superior surface is of quadrilateral form, marked behind by a rough impression for the insertion of the Triceps brachii; and in front, near the margin, by a slight transverse groove for the attachment of part of the posterior ligament of the elbow-joint. Its anterior surface is smooth, concave, and forms the upper part of the semilunar notch. Its borders present continuations of the groove on the margin of the superior surface; they serve for the attachment of ligaments, viz. , the back part of the ulnar collateral ligament medially, and the posterior ligament laterally. From the medial border a part of the Flexor carpi ulnaris arises; while to the lateral border the anconeus muscle is attached." [Wikipedia:Olecranon] synonym: "olecranon process" RELATED [Wikipedia:Olecranon] synonym: "ulnar process" RELATED [AAO:0000843] xref: AAO:0000843 xref: FMA:39795 xref: ncithesaurus:Olecranon xref: SCTID:181949001 is_a: UBERON:0005055 ! implied link automatically realized ! zone of long bone is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0006822 ! proximal epiphysis of ulna [Term] id: UBERON:0006811 name: occipital condyle def: "The occipital condyles are undersurface facets of the occipital bone in vertebrates, which function in articulation with the superior facets of the atlas vertebra. The condyles are oval or reniform (kidney-shaped) in shape, and their anterior extremities, directed forward and medialward, are closer together than their posterior, and encroach on the basilar portion of the bone; the posterior extremities extend back to the level of the middle of the foramen magnum. The articular surfaces of the condyles are convex from before backward and from side to side, and look downward and lateralward. To their margins are attached the capsules of the atlantoC6ccipital articulations, and on the medial side of each is a rough impression or tubercle for the alar ligament. At the base of either condyle the bone is tunnelled by a short canal, the hypoglossal canal." [Wikipedia:Occipital_condyle] comment: birds have a single occipital condyle[WP] xref: AAO:0000330 xref: FMA:52861 is_a: UBERON:0000032 ! implied link automatically realized ! cranial structure is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001693 ! exoccipital bone [Term] id: UBERON:0006812 name: mental foramen def: "The mental foramen is one of two holes (\"foramina\") located on the anterior surface of the mandible. It permits passage of the mental nerve and vessels. The mental foramen descends slightly in edentulous individuals." [Wikipedia:Mental_foramen] synonym: "foramen mentalis" RELATED [Wikipedia:Mental_foramen] synonym: "mental foramina" EXACT PLURAL [OBOL:automatic] xref: AAO:0000298 xref: FMA:53171 xref: SCTID:244686000 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0004111 ! anatomical conduit relationship: part_of UBERON:0001684 ! mandible [Term] id: UBERON:0006813 name: nasal skeleton def: "Structural framework that provides support to the nasal sacs and ducts." [AAO:0000320] synonym: "skeleton of nose" EXACT [FMA:60116] xref: AAO:0000320 xref: FMA:60116 xref: SCTID:281486007 is_a: UBERON:0000075 {source="FMA"} ! subdivision of skeletal system is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0000004 intersection_of: UBERON:0000075 ! subdivision of skeletal system intersection_of: part_of UBERON:0000004 ! olfactory apparatus relationship: part_of UBERON:0000004 {source="FMA"} ! olfactory apparatus [Term] id: UBERON:0006815 name: areolar connective tissue def: "Loose connective tissue located at the outer and inner layers of organs. Examples: submucosal connective tissue, tunica adventitia of artery, papillary dermis, superficial fascia of dorsum of hand.[FMA]" [FMA:63897, FMA:FMA] comment: consider adding separate class for LCT synonym: "loose areolar connective tissue" EXACT [FMA:63897] synonym: "loose connective tissue" EXACT [AAO:0000027] xref: AAO:0000027 xref: FMA:63897 xref: ncithesaurus:Loose_Connective_Tissue xref: SCTID:68477002 is_a: UBERON:0002384 ! connective tissue relationship: part_of UBERON:0000030 ! lamina propria [Term] id: UBERON:0006820 name: body of sternum def: "The body of the sternum (gladiolus), considerably lengthier, narrower, and thinner than the manubrium, attains its greatest breadth close to the lower end." [Wikipedia:Body_of_sternum] comment: AAO - Proximal portion of the sternum, usually elaborated into a stylum that may be ossified. [AAO:0000939] synonym: "body of the sternum" RELATED [Wikipedia:Body_of_sternum] synonym: "gladiolus of sternum" EXACT [FMA:7487] synonym: "mesosternum" EXACT [FMA:7487] synonym: "sternal body" EXACT [FMA:7487] xref: AAO:0000939 xref: FMA:7487 xref: SCTID:361743001 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0000975 ! sternum [Term] id: UBERON:0006821 name: cutaneous muscle xref: AAO:0000119 xref: FMA:74996 xref: ncithesaurus:Cutaneous_Muscle is_a: UBERON:0002385 ! muscle tissue relationship: part_of UBERON:0001774 ! muscle of trunk [Term] id: UBERON:0006822 name: proximal epiphysis of ulna def: "The head of ulna presents an articular surface, part of which, of an oval or semilunar form, is directed downward, and articulates with the upper surface of the triangular articular disk which separates it from the wrist-joint; the remaining portion, directed lateralward, is narrow, convex, and received into the ulnar notch of the radius." [Wikipedia:Head_of_ulna] synonym: "caput ulnae" EXACT [FMA:33751, FMA:TA] synonym: "head of ulna" EXACT [FMA:33751] synonym: "proximal end of ulna" EXACT [FMA:33751] synonym: "upper end of ulna" EXACT [FMA:33751] xref: FMA:33751 xref: galen:HeadOfUlna xref: SCTID:304590006 is_a: UBERON:0004380 ! implied link automatically realized ! proximal epiphysis is_a: UBERON:0004386 ! implied link automatically realized ! epiphysis of ulna relationship: part_of UBERON:0001424 intersection_of: UBERON:0004380 ! proximal epiphysis intersection_of: part_of UBERON:0001424 ! ulna [Term] id: UBERON:0006828 name: trabecula carnea of atrium def: "the supporting bundles of muscular fibers lining the walls of the atria[MP]." [MP:0010581] comment: Dubious: Not present in any AO. Note that WP states that trabecular carnea are ventricular and 'They should not be confused with the pectinate muscles, which are present in the right[1] and left atria only' is_a: UBERON:0002511 ! implied link automatically realized ! trabecula carnea relationship: part_of UBERON:0002081 intersection_of: UBERON:0002511 ! trabecula carnea intersection_of: part_of UBERON:0002081 ! cardiac atrium [Term] id: UBERON:0006829 name: remnant of left anterior vena cava def: "." [Wikipedia:Persistent_left_superior_vena_cava] comment: The mouse has both left and right anterior vena cava. adult humans only have a right. Postnatally the left regresses and becomes non-functional (Wessels and Sedmera 2003). is_a: UBERON:0001638 ! vein is_a: UBERON:0004148 ! implied link automatically realized ! coronary vein relationship: develops_from UBERON:0006765 ! left anterior vena cava relationship: part_of UBERON:0002078 ! right atrium [Term] id: UBERON:0006831 name: pre-tracheal muscle synonym: "pretracheal muscle" EXACT [MA:0001798] xref: EMAPA:25142 xref: MA:0001798 is_a: UBERON:0000933 ! pharyngeal muscle [Term] id: UBERON:0006832 name: lumen of open tracheal system trachea synonym: "tracheal lumen" RELATED SENSU [FBbt:00007410] xref: FBbt:00007410 is_a: UBERON:0000464 ! implied link automatically realized ! anatomical space relationship: surrounded_by UBERON:0003127 intersection_of: UBERON:0000464 ! anatomical space intersection_of: surrounded_by UBERON:0003127 ! open tracheal system trachea [Term] id: UBERON:0006833 name: lumen of trachea synonym: "lumen of cartilaginous trachea" EXACT [OBOL:automatic] synonym: "tracheal lumen" EXACT [FMA:7469] xref: FMA:7469 xref: SCTID:197486000 is_a: UBERON:0000464 ! implied link automatically realized ! anatomical space relationship: surrounded_by UBERON:0003126 intersection_of: UBERON:0000464 ! anatomical space intersection_of: surrounded_by UBERON:0003126 ! trachea [Term] id: UBERON:0006834 name: uterus or analog def: "An internal female reproductive organ that is the site of embryo development." [] subset: grouping_class synonym: "uterus" BROAD SENSU [FBbt:00004924] xref: FBbt:00004924 xref: TADS:0000421 xref: WBbt:0006760 is_a: UBERON:0003975 ! implied link automatically realized ! internal female genitalia relationship: part_of UBERON:0000474 ! female reproductive system [Term] id: UBERON:0006835 name: arthropod oviduct def: "A tube that connects ovary to the uterus." [TADS:0000415] xref: FBbt:00004911 xref: TADS:0000415 is_a: UBERON:0003914 {source="FBbt"} ! epithelial tube is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: continuous_with UBERON:0000992 ! female gonad relationship: continuous_with UBERON:0006834 ! uterus or analog relationship: part_of UBERON:0000474 ! female reproductive system [Term] id: UBERON:0006836 name: medial tibial tarsal bone comment: AAO: One of two element that constitute the basal row of tarsals. The tibiale constitutes the postaxial element. In salamanders this element is aproximatelly rounded, whereas in anurans it is an elongate, cylindrical bone with the proximal and distal heads fused to the heads of the fibulare. todo - check grouping synonym: "tibiale" RELATED [AAO:0000912, MA:0001350] xref: AAO:0000912 xref: MA:0001350 is_a: UBERON:0001447 ! tarsal bone [Term] id: UBERON:0006837 name: tegmen tympani def: "The Tegmental Wall or Roof (paries tegmentalis) is formed by a thin plate of bone, the tegmen tympani, which separates the cranial and tympanic cavities. It is situated on the anterior surface of the petrous portion of the temporal bone close to its angle of junction with the squama temporalis; it is prolonged backward so as to roof in the tympanic antrum, and forward to cover in the semicanal for the Tensor tympani muscle. Its lateral edge corresponds with the remains of the petrosquamous suture[Grays] ." [http://education.yahoo.com/reference/gray/subjects/subject/230] comment: todo - check AAO; grouping is made on basis of related synonym. Crista parotica: seems to be the same as the crista prootica. However, since this lateral ridge of the otic capsule is frequently formed by the opisthotic, rather than the prootic, this may be a better name.; Crista prootica: a ledge or ridge which elaborates the dorsal surface of the prootic or, more generally, the roof of the otic capsule, laterally. The crista may extend posteriorly & laterally, continuous with the paroccipital process, and/or anteriorly or anteroventrally to protect cranial nerve foramina and form part of the fenestra ovalis/vestibuli. In basal tetrapodomorphs and tetrapods, the crista prootica forms the floor of the posttemporal fenestra. See The Prootic. In many tetrapods, the crista prootica is not ossified, or incompletely ossified. However, in frogs, the crista is the main strut joining the skull roofing bones (frontoparietals) with the squamosals. The crista prootica has a similarly expanded role in mammals where it forms an important part of the epitympanic recess and anchors the tympanohyal.[http://www.palaeos.com] subset: dubious_grouping synonym: "crista parotica" RELATED HOMOLOGY [AAO:0000116] synonym: "crista prootica" RELATED HOMOLOGY [AAO:0000116, http://www.palaeos.com/Vertebrates/Lists/Glossary/GlossaryCr.html] synonym: "paries tegmentalis cavi tympani" EXACT [FMA:56002, FMA:TA] synonym: "processus muscularis capsulae auditivae" RELATED [AAO:0000116] synonym: "processus squamosus" RELATED HOMOLOGY [AAO:0000116] synonym: "tegmental roof of tympanic cavity" EXACT [FMA:56002] synonym: "tegmental wall of tympanic cavity" EXACT [FMA:56002] xref: AAO:0000116 xref: FMA:56002 is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001756 ! middle ear [Term] id: UBERON:0006838 name: anterior ramus of spinal nerve def: "The ventral ramus (anterior ramus, anterior branch, anterior divisions of the spinal nerves) supply the antero-lateral parts of the trunk, and the limbs; they are for the most part larger than the posterior divisions. In the thoracic region they remain distinct from each other and each innervates a narrow strip of muscle and skin along the sides, chest, ribs, and abdominal wall. These rami are called the intercostal nerves. In regions other than the thoracic, ventral rami converge with each other to form networks of nerves called nerve plexuses. Within each plexus, fibers from the various ventral rami branch and become redistributed so that each nerve exiting the plexus has fibers from several different spinal nerves. One advantage to having plexuses is that damage to a single spinal nerve will not completely paralyze a limb. There are four main plexuses formed by the ventral rami: The cervical plexus contains ventral rami from spinal nerves C1-C5. Branches of the cervical plexus, which include the phrenic nerve, innervate muscles of the neck, the diaphragm, and the skin of the neck and upper chest. The brachial plexus contains ventral rami from spinal nerves C5-T1. This plexus innervates the pectoral girdle and upper limb. The lumbar plexus contains ventral rami from spinal nerves L1-L4. The sacral plexus contains ventral rami from spinal nerves L4-S4. The lumbar and sacral plexuses innervate the pelvic girdle and lower limbs. The Ventral rami, including the sinuvertebral nerve branches, supply structures anterior to the facet joint, including the vertebral bodies, the discs and their ligaments and joints other spinal nerves to form the lumbo-sacral plexus." [Wikipedia:Anterior_ramus_of_spinal_nerve] synonym: "anterior primary ramus of spinal nerve" EXACT [FMA:5982] synonym: "ramus anterior" BROAD [FMA:5982] synonym: "ventral ramus of spinal nerve" EXACT [FMA:5982] xref: FMA:5982 is_a: UBERON:0001021 ! nerve relationship: branch_of UBERON:0005476 ! spinal nerve trunk relationship: part_of UBERON:0001780 ! spinal nerve [Term] id: UBERON:0006839 name: posterior ramus of spinal nerve def: "The posterior (or dorsal) branches (or divisions) of the spinal nerves are as a rule smaller than the anterior divisions. They are also referred to as the dorsal rami. They are directed backward, and, with the exceptions of those of the first cervical, the fourth and fifth sacral, and the coccygeal, divide into medial and lateral branches for the supply of the muscles and skin of the posterior part of the trunk. Shortly after a spinal nerve exits the intervertebral foramen, it branches into the dorsal ramus, ventral ramus, and rami communicantes. Each of these latter three structures carries both sensory and motor information. Because each spinal nerve carries both sensory and motor information, spinal nerves are referred to as bmixed nerves. b Dorsal rami carry visceral motor, somatic motor, and sensory information to and from the skin and muscles of the back. Dorsal rami remain distinct from each other, and each innervates a narrow strip of skin and muscle along the back, more or less at the level from which the ramus leaves the spinal nerve. The smaller, posteriorly-directed major terminal branch (with the ventral primary ramus) of all 31 pairs of mixed spinal nerves, formed at the intervertebral foramen and turning abruptly posteriorly to divide into lateral and medial branches, both of which will supply the deep (true) muscles of the back. The medial branch (rami medialis) of the dorsal primary ramus also supplies articular branches to the zygopophyseal joints and the periosteum of the vertebral arch. In the neck and upper back, the medial branch continues through the deep and superficial back muscles to supply overlying skin; in the lower back, the lateral branch does this. Nomina Anatomica lists dorsal primary rami as \"rami dorsales\" for each group of spinal nerves: 1) cervical (nervorum cervicalium), 2) thoracic (nervorum thoracicorum), 3) lumbar (nervorum lumbalium), 4) sacral (nervorum sacralium), and 5) coccygeal (nervi coccygei). Synonyms: ramus dorsalis nervorum spinalium, ramus dorsalis, rami posteriores nervorum spinalium, dorsal branch, posterior primary division." [Wikipedia:Posterior_ramus_of_spinal_nerve] synonym: "dorsal ramus" EXACT [FMA:5983] synonym: "dorsal ramus of spinal nerve" EXACT [FMA:5983] synonym: "posterior primary ramus" EXACT [FMA:5983] synonym: "ramus posterior" BROAD [FMA:5983] xref: AAO:0010800 xref: FMA:5983 is_a: UBERON:0001021 ! nerve relationship: branch_of UBERON:0005476 ! spinal nerve trunk relationship: part_of UBERON:0001780 ! spinal nerve [Term] id: UBERON:0006840 name: nucleus of lateral lemniscus comment: not clear if the ZFA class denotes the same entity; check relationship to midbrain tegmentum - this leads to inconsistency with ABA. The FMA class should represnet the grouping, but there is no FMA class for the singular at the moment subset: vertebrate_core synonym: "lateral lemniscus nuclei" EXACT [ZFA:0000380] synonym: "nuclei lemnisci lateralis" EXACT [FMA:84025, FMA:TA] synonym: "nuclei of lateral lemniscus" RELATED [FMA:84025] xref: ABA:NLL xref: EV:0100265 xref: FMA:84025 xref: SCTID:369023003 xref: ZFA:0000380 is_a: UBERON:0002308 ! nucleus of brain relationship: spatially_disjoint_from UBERON:0002128 {source="ABA"} ! superior olivary complex relationship: spatially_disjoint_from UBERON:0002597 {source="ABA"} ! principal sensory nucleus of trigeminal nerve relationship: spatially_disjoint_from UBERON:0007634 {source="ABA"} ! parabrachial nucleus [Term] id: UBERON:0006841 name: central vein of liver def: "Vein that is central to a lobule in the liver." [ZFA:0005168] subset: vertebrate_core synonym: "terminal branch of hepatic vein" EXACT [FMA:17544] synonym: "terminal hepatic venule" EXACT [FMA:17544] synonym: "vena centralis (Hepar)" EXACT [FMA:17544] xref: FMA:17544 xref: SCTID:272023004 xref: ZFA:0005168 is_a: UBERON:0001143 ! implied link automatically realized ! hepatic vein is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0004647 ! liver lobule [Term] id: UBERON:0006842 name: lymphatic capillary def: "Microvessel of the lymphatic system lined with a single layer of overlapping endothelial cells." [ZFA:0005252] comment: todo - check superclass subset: vertebrate_core synonym: "lymph capillary" EXACT [FMA:5028] xref: FMA:5028 xref: ncithesaurus:Lymphatic_Capillary xref: ZFA:0005252 is_a: UBERON:0001473 ! lymphatic vessel relationship: part_of UBERON:0004536 ! lymph vasculature [Term] id: UBERON:0006843 name: root of cranial nerve comment: Editor note: recommend asserting under this class rather than relying on inference, as relations may change subset: vertebrate_core synonym: "cranial nerve root" EXACT [FMA:52609] synonym: "cranial neural root" EXACT [FMA:52609] xref: FMA:52609 xref: SCTID:280161004 xref: ZFA:0001663 is_a: UBERON:0002211 ! implied link automatically realized ! nerve root relationship: continuous_with UBERON:0001785 intersection_of: UBERON:0002211 ! nerve root intersection_of: continuous_with UBERON:0001785 ! cranial nerve [Term] id: UBERON:0006844 name: cusp of tooth def: "Acellular anatomical structure that is a natural outgrowth, prominence, or point that is part of the surface of a tooth." [ZFA:0005434] subset: vertebrate_core synonym: "tooth cusp" EXACT [FMA:56481] xref: FMA:56481 xref: SCTID:362107000 xref: ZFA:0005434 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0000476 ! acellular anatomical structure relationship: part_of UBERON:0003675 ! tooth crown [Term] id: UBERON:0006845 name: abductor muscle def: "A muscle that moves a body part away from the sagittal plane/midline of the body[ZFA]. For example, the abductor muscles of the legs spread the legs away from the midline and away from one another. An abductor muscle opposes an adductor muscle[BTO]." [ZFA:0005269] comment: note that in FMA the Adbuctor muscle is a subclass of Relation. It's unclear what this actually means, we leave it here as a grouping for now subset: grouping_class xref: BTO:0004642 xref: FMA:74997 xref: ZFA:0005269 is_a: UBERON:0001134 ! skeletal muscle tissue [Term] id: UBERON:0006846 name: groove def: "Anatomical line that delineates a furrow or depression in an organ or tissue." [ZFA:0001690] subset: grouping_class xref: AAO:0010276 xref: AEO:0000161 xref: EHDAA2:0003161 xref: FMA:75037 xref: ZFA:0001690 is_a: UBERON:0006800 ! anatomical line [Term] id: UBERON:0006847 name: cerebellar commissure subset: vertebrate_core synonym: "commissura cerebelli" EXACT [ZFA:0000490] xref: FMA:77522 xref: ZFA:0000490 is_a: UBERON:0001020 ! commissure is_a: UBERON:0002317 ! white matter of cerebellum [Term] id: UBERON:0006848 name: posterior pretectal nucleus def: "Diencephalic nucleus that is part of the superficial pretectum and is rostrally contiguous with the magnocellular superficial pretectal nucleus. Cells of the caudal pretectal nucleus are slightly smaller and less orderly around a central neuropil than those of the magnocellular superficial pretectal nucleus. From Neuroanatomy of the Zebrafish Brain." [ZFA:0000631] subset: dubious_grouping subset: vertebrate_core synonym: "caudal pretectal nuclei" EXACT [ZFA:0000631] synonym: "posterior pretectal nucleus" EXACT [ZFA:0000631] xref: ABA:PPT xref: FMA:84355 xref: ZFA:0000631 is_a: UBERON:0006569 ! diencephalic nucleus relationship: spatially_disjoint_from UBERON:0002565 {source="ABA"} ! olivary pretectal nucleus relationship: spatially_disjoint_from UBERON:0002711 {source="ABA"} ! nucleus of posterior commissure relationship: spatially_disjoint_from UBERON:0002996 {source="ABA"} ! nucleus of optic tract [Term] id: UBERON:0006849 name: scapula def: "In tetrapods: bone that connects the humerus (upper arm bone) with the clavicle. In teleosts: Endochondral bone that is located medial to the cleithrum, and articulates ventrally with the coracoid, medially with the mesocoracoid when the later is present and posteriorly with the upper one to three proximal radials. The scapula develops from the scapulocoracoid cartilage and belongs to the primary pectoral girdle. It may be perforated by the scapular foramen or it may be notched ventrally and forms together with a similar notch of the coracoid the scapulocoracoid foramen." [TAO:curator] comment: note we create a specific subclass for tetrapod scapula synonym: "scapulae" EXACT PLURAL [ZFA:0000583] xref: MESH:A.02.835.232.087.783 xref: SCTID:302517007 xref: TAO:0000583 xref: ZFA:0000583 is_a: UBERON:0002513 {source="ZFA"} ! endochondral bone is_a: UBERON:0007829 ! implied link automatically realized ! pectoral girdle bone relationship: develops_from UBERON:0004753 {source="ZFA"} ! scapulocoracoid relationship: part_of UBERON:0007831 {source="ZFA"} ! skeleton of pectoral girdle [Term] id: UBERON:0006850 name: tetrapod pectoral girdle is_obsolete: true [Term] id: UBERON:0006851 name: renal cortex peritubular capillary xref: MA:0002590 is_a: UBERON:0005272 ! implied link automatically realized ! peritubular capillary relationship: part_of UBERON:0001225 intersection_of: UBERON:0005272 ! peritubular capillary intersection_of: part_of UBERON:0001225 ! cortex of kidney [Term] id: UBERON:0006852 name: glomerular visceral epithelium synonym: "podocyte layer" RELATED [MA:0002607] xref: EMAPA:28254 xref: MA:0002607 is_a: UBERON:0004188 ! glomerular epithelium relationship: part_of UBERON:0000074 ! renal glomerulus [Term] id: UBERON:0006853 name: renal cortex tubule xref: EMAPA:18976 xref: MA:0002609 is_a: UBERON:0007685 ! implied link automatically realized ! region of nephron tubule relationship: part_of UBERON:0001225 intersection_of: UBERON:0007685 ! region of nephron tubule intersection_of: part_of UBERON:0001225 ! cortex of kidney relationship: part_of UBERON:0001225 {source="MA"} ! cortex of kidney [Term] id: UBERON:0006854 name: distal straight tubule postmacula segment def: "." [https://sourceforge.net/tracker/?func=detail&aid=3123598&group_id=76834&atid=1205376] synonym: "cortical thick ascending limb of Henle's loop" EXACT [MA:th] synonym: "kidney cortex loop of Henle ascending limb thick segment" EXACT [MA:th] synonym: "renal cortex loop of Henle ascending limb thick segment" EXACT [MA:th] synonym: "renal cortex thick ascending limb" EXACT [MA:th] xref: EMAPA:28402 xref: MA:0002615 is_a: UBERON:0006853 ! implied link automatically realized ! renal cortex tubule is_a: UBERON:0007685 ! region of nephron tubule is_a: UBERON:0008408 ! implied link automatically realized ! distal tubular epithelium relationship: part_of UBERON:0001291 {source="MA"} ! thick ascending limb of loop of Henle relationship: part_of UBERON:0006853 {source="MA"} ! renal cortex tubule [Term] id: UBERON:0006855 name: ureter muscle layer synonym: "muscular coat of ureter" EXACT [FMA:15893] synonym: "muscular layer of ureter" EXACT [FMA:15893] synonym: "muscularis of ureter" EXACT [FMA:15893] synonym: "tunica muscularis (ureter)" EXACT [FMA:TA] synonym: "tunica muscularis ureteris" EXACT [FMA:TA] xref: FMA:15893 xref: MA:0002654 xref: SCTID:3563003 is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure is_a: UBERON:0006660 ! implied link automatically realized ! muscle layer relationship: part_of UBERON:0000056 intersection_of: UBERON:0006660 ! muscle layer intersection_of: part_of UBERON:0000056 ! ureter relationship: part_of UBERON:0009916 {source="FMA"} ! wall of ureter [Term] id: UBERON:0006856 name: interrenal gland def: "Structures in fishes homologous to the cortical tissue of the mammalian adrenal gland; they are in close proximity to or imbedded in the head kidney." [BTO:0000808, doi:10.1242/dev.00427] comment: check isa - not a true gland? There are two types of interrenal cells identified (1) The noradrenaline type, which contain heterogeneous vesicles with electron-dense granules located asymmetrically within the vesicular membrane. (2) The adrenaline type, in which the vesicles are smaller and contain homogenous electron-lucent granules that are separated from the vesicular membrane by a visible -- halo http://dev.biologists.org/content/130/10/2107.full subset: organ_slim synonym: "interrenal" RELATED [http://dev.biologists.org/content/130/10/2107.full] synonym: "interrenal body" RELATED [BTO:0000808] xref: BTO:0000808 xref: GAID:1227 xref: MESH:A.13.530 xref: ZFA:0001345 is_a: UBERON:0002368 ! endocrine gland is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004177 ! implied link automatically realized ! hemopoietic organ is_a: UBERON:0005058 ! implied link automatically realized ! hemolymphoid system gland is_a: UBERON:0005172 ! implied link automatically realized ! abdomen organ is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: develops_from UBERON:0006857 {source="ZFA"} ! interrenal primordium relationship: homologous_to UBERON:0001235 {source="ZFA:0001345"} ! adrenal cortex relationship: part_of UBERON:0007132 {source="ZFA"} ! head kidney [Term] id: UBERON:0006857 name: interrenal primordium xref: TAO:0001346 xref: ZFA:0001346 xref: ZFIN:ZDB-ANAT-060131-24 is_a: UBERON:0000481 {source="ZFA"} ! multi-tissue structure is_a: UBERON:0001048 {source="Obol"} ! primordium is_a: UBERON:0002050 ! implied link automatically realized ! embryonic structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: develops_from UBERON:0003064 ! intermediate mesoderm relationship: part_of UBERON:0000080 ! mesonephros relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0006858 name: adrenal/interrenal gland def: "This gland can either be a discrete structure located bilaterally above each kidney, or a cluster of cells in the head kidney that perform the functions of the adrenal gland. In either case, this organ consists of two cells types, aminergic chromaffin cells and steroidogenic cortical cells[GO]" [GO:0030325] comment: check isa - not a true gland? subset: organ_slim xref: OG:0001141 is_a: UBERON:0002368 ! endocrine gland is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0005172 ! implied link automatically realized ! abdomen organ relationship: develops_from UBERON:0003064 ! intermediate mesoderm relationship: part_of UBERON:0000916 ! abdomen [Term] id: UBERON:0006859 name: swim bladder bud def: "Embryonic structure that forms from the anterior gut epithelium at the level of the second somite that then matures to form the swim bladder." [ZFIN:ZDB-PUB-090511-18, ZFIN:ZDB-PUB-100202-11] xref: TAO:0005335 xref: ZFA:0005335 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0006860 name: swim bladder alt_id: UBERON:0008980 def: "A thin membranous, sometimes alveolated sac in the dorsal portion of the abdominal cavity. Contains a varying mixture of gases, not identical to the composition of air. May be one, two or three chambered. May be connected to the gut by a tube, the ductus pneumaticus (then called physostomous) or unconnected (then called physoclistous). May function as one or more of:- hydrostatic organ, sound producing organ, sound receptor, respiratory organ. Found in Actinopterygii. Often lacking in bottom fishes." [http://www.briancoad.com/Dictionary/S.htm] subset: organ_slim synonym: "gas bladder" EXACT [http://www.briancoad.com/Dictionary/S.htm, ZFA:0000076] xref: BTO:0001607 xref: BTO:0002148 xref: EFO:0003483 xref: SCTID:64748009 xref: TAO:0000076 xref: ZFA:0000076 xref: ZFIN:ZDB-ANAT-010921-495 is_a: UBERON:0000489 ! cavitated compound organ relationship: develops_from UBERON:0006859 ! swim bladder bud relationship: homologous_to UBERON:0002048 ! lung relationship: part_of UBERON:0002323 ! body cavity [Term] id: UBERON:0006861 name: diaphysis proper def: "Subdivision of long bone which forms the part of the bone between two metaphyses." [UBERON:cjm] comment: The MA class is placed here because we assume it means diaphysis proper, because in MA epiphysis is not part of MA:0002803 synonym: "body proper of long bone" EXACT [FMA:32688] synonym: "long bone diaphysis" RELATED INCONSISTENT [MA:0002803] synonym: "shaft proper of long bone" EXACT [FMA:32688] xref: FMA:32688 xref: MA:0002803 is_a: UBERON:0005055 ! zone of long bone relationship: part_of UBERON:0004769 ! diaphysis [Term] id: UBERON:0006862 name: diaphysis of femur synonym: "body of femur" EXACT [FMA:32847] synonym: "corpus femoris" EXACT [FMA:32847, FMA:TA] synonym: "femoral diaphysis" EXACT [FMA:32847] synonym: "shaft of femur" EXACT [FMA:32847] xref: FMA:32847 xref: SCTID:182048009 is_a: UBERON:0004769 ! implied link automatically realized ! diaphysis relationship: part_of UBERON:0000981 intersection_of: UBERON:0004769 ! diaphysis intersection_of: part_of UBERON:0000981 ! femur [Term] id: UBERON:0006863 name: proximal metaphysis of femur xref: FMA:32878 is_a: UBERON:0004378 ! implied link automatically realized ! proximal metaphysis is_a: UBERON:0006865 ! implied link automatically realized ! metaphysis of femur relationship: part_of UBERON:0000981 intersection_of: UBERON:0004378 ! proximal metaphysis intersection_of: part_of UBERON:0000981 ! femur [Term] id: UBERON:0006864 name: distal metaphysis of femur xref: FMA:32881 is_a: UBERON:0004377 ! implied link automatically realized ! distal metaphysis is_a: UBERON:0006865 ! implied link automatically realized ! metaphysis of femur relationship: part_of UBERON:0000981 intersection_of: UBERON:0004377 ! distal metaphysis intersection_of: part_of UBERON:0000981 ! femur [Term] id: UBERON:0006865 name: metaphysis of femur synonym: "femoral metaphysis" EXACT [FMA:32875] xref: FMA:32875 is_a: UBERON:0001438 ! implied link automatically realized ! metaphysis relationship: part_of UBERON:0000981 intersection_of: UBERON:0001438 ! metaphysis intersection_of: part_of UBERON:0000981 ! femur [Term] id: UBERON:0006866 name: terminal part of digestive tract xref: FBbt:00005756 xref: WBbt:0005773 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004921 ! subdivision of digestive tract relationship: continuous_with UBERON:0001245 ! anus relationship: part_of UBERON:0001046 ! hindgut [Term] id: UBERON:0006867 name: anal part of perineum def: "The anal triangle is the posterior part of the perineum. It contains the anal canal. [WP,unvetted]." [Wikipedia:Anal_triangle] synonym: "anal region" BROAD [FMA:20347] synonym: "anal triangle" EXACT [FMA:20347] synonym: "regio analis" EXACT [FMA:20347, FMA:TA] xref: FMA:20347 xref: SCTID:243995004 is_a: UBERON:0000064 ! organ part is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure relationship: contains UBERON:0000159 ! anal canal relationship: part_of UBERON:0001353 ! anal region relationship: part_of UBERON:0002356 ! perineum [Term] id: UBERON:0006868 name: seminal gland subset: organ_slim xref: FBbt:00004958 xref: WBbt:0006870 is_a: UBERON:0005399 ! implied link automatically realized ! male reproductive gland relationship: secretes UBERON:0006530 intersection_of: UBERON:0002530 ! gland intersection_of: secretes UBERON:0006530 ! seminal fluid relationship: part_of UBERON:0000079 ! male reproductive system relationship: part_of UBERON:0006947 ! male genital duct [Term] id: UBERON:0006869 name: electric organ def: "A specialized tract of tissue (as in the electric eel) in which electricity is generated." [BTO:0000376, Wikipedia:Electric_organ] comment: todo - request go term for function assignment xref: BTO:0000376 xref: GAID:1210 xref: MESH:A.13.332 is_a: UBERON:0000062 ! organ relationship: part_of UBERON:0002415 ! tail [Term] id: UBERON:0006870 name: endostyle def: "An endostyle is a longitudinal ciliated groove on the ventral wall of the pharynx which produces mucus to gather food particles. It is found in urochordates and cephalochordates, and in the larvae of lampreys. It aids in transporting food to the esophagus. It is also called the hypopharyngeal groove. The endostyle in larval lampreys (ammocetes) metamorphoses into the thyroid gland in adults, and is regarded as being homologous to the thyroid gland in vertebrates. However, Dumont, et al. question whether the endostyle in ammocetes is homologous with that of the urochordates and cephalochordates. Since the endostyle is found in the three branches of chordates, it is presumed to have arisen in the common ancestor of these taxa, along with a shift to internal feeding for extracting suspended food from the water." [Wikipedia:Endostyle] comment: Dumont, et al. question whether the endostyle in ammocetes is homologous with that of the urochordates and cephalochordates[WP]. synonym: "hypopharyngeal groove" RELATED [BTO:0003173] xref: ANISEED:1235299 xref: BTO:0003173 is_a: UBERON:0006846 ! groove relationship: develops_into UBERON:0002046 ! thyroid gland relationship: part_of UBERON:0000949 {source="http://webs.lander.edu/rsfox/invertebrates/ammocoetes.html"} ! endocrine system relationship: part_of UBERON:0006562 ! pharynx [Term] id: UBERON:0006871 name: footplate xref: EHDAA:5143 xref: EHDAA:6096 xref: EMAPA:17249 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0005418 ! hindlimb bud [Term] id: UBERON:0006872 name: handplate apical ectodermal ridge xref: EHDAA2:0000729 xref: EMAPA:17247 is_a: UBERON:0005421 ! implied link automatically realized ! anterior limb/fin apical ectodermal ridge relationship: part_of UBERON:0006875 intersection_of: UBERON:0004356 ! apical ectodermal ridge intersection_of: part_of UBERON:0006875 ! handplate [Term] id: UBERON:0006875 name: handplate xref: EHDAA:4194 xref: EHDAA:6242 xref: EMAPA:17245 xref: ncithesaurus:Hand_Plate is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0005417 ! forelimb bud [Term] id: UBERON:0006876 name: vasculature of organ synonym: "organ vasculature" EXACT [FMA:74612] synonym: "set of blood vessels of organ" EXACT [FMA:74612] xref: FMA:74612 is_a: UBERON:0002049 ! implied link automatically realized ! vasculature relationship: part_of UBERON:0000062 intersection_of: UBERON:0002049 ! vasculature intersection_of: part_of UBERON:0000062 ! organ [Term] id: UBERON:0006877 name: vasculature of liver comment: the EHDAA2 term and the FMA term may not be exact equivalents - check synonym: "hepatic vasculature" EXACT [FMA:73748] synonym: "liver vascular system" RELATED [EHDAA2:0003454] xref: EHDAA2:0003454 xref: FMA:73748 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002201 ! implied link automatically realized ! vasculature of trunk is_a: UBERON:0006876 ! implied link automatically realized ! vasculature of organ relationship: part_of UBERON:0002107 intersection_of: UBERON:0002049 ! vasculature intersection_of: part_of UBERON:0002107 ! liver [Term] id: UBERON:0006878 name: decidua parietalis def: "The part of the decidua in the pregnant human female lining the uterus." [Fast_Health_Medical_Dictionary:http\://www.fasthealth.com/dictionary/] synonym: "decidua vera" RELATED [BTO:0000334] xref: BTO:0000334 xref: FMA:86479 xref: ncithesaurus:Decidua_Parietalis xref: SCTID:255413006 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000478 ! extraembryonic structure is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0002450 ! decidua [Term] id: UBERON:0006904 name: mesenchyme derived from head mesoderm subset: vertebrate_core synonym: "head mesenchyme from head mesoderm" EXACT [EHDAA2:0001118] synonym: "mesenchyme derived from head mesoderm" EXACT [EHDAA:1057] xref: EFO:0003603 xref: EHDAA:655 xref: EHDAA2:0001118 xref: EMAPA:16099 xref: OG:0000185 xref: ZFA:0000998 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005253 {source="ZFA"} ! head mesenchyme relationship: develops_from UBERON:0005280 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: develops_from UBERON:0005280 ! head mesoderm [Term] id: UBERON:0006905 name: mandibular process mesenchyme xref: EHDAA:5861 xref: EHDAA:5873 xref: EHDAA2:0001062 xref: EMAPA:17357 xref: OG:0000425 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue relationship: part_of UBERON:0005867 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0005867 ! mandibular prominence [Term] id: UBERON:0006906 name: ala of nose def: "The lateral surface of the external nose ends below in a rounded eminence, the wing of the nose. It is elevated by the Levator labii superioris alaeque nasi muscle[WP]. the tissue comprising the lateral boundary of the nose, inferiorly, surrounding the naris[EoM]." [http://onlinelibrary.wiley.com/doi/10.1002/ajmg.a.32600/full, Wikipedia:Ala_of_nose] synonym: "ala nasi" RELATED [Wikipedia:Ala_of_nose] synonym: "ala of the nose" RELATED [Wikipedia:Ala_of_nose] synonym: "nasal ala" EXACT [FMA:59519] synonym: "wing of nose" RELATED [Wikipedia:Ala_of_nose] synonym: "wing of the nose" RELATED [Wikipedia:Ala_of_nose] synonym: "wings of the nose" RELATED [Wikipedia:Ala_of_nose] xref: FMA:59519 is_a: UBERON:0000063 ! organ segment is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: develops_from UBERON:0004067 ! lateral nasal prominence relationship: part_of UBERON:0000004 ! olfactory apparatus [Term] id: UBERON:0006907 name: slow muscle tissue def: "The darker-colored muscle tissue of some mammals, composed of slow twitch muscle fibers." [BTO:0002317] comment: The fast and slow skeletal muscles are different in terms of twitching speed (Fitts 1994), and they are believed to be derived from distinct myogenic precursors (Stockdale 1992) synonym: "red muscle" RELATED [BTO:0002317] synonym: "slow muscle" EXACT [BTO:0002317] synonym: "slow skeletal muscle tissue" EXACT [] xref: BTO:0002317 is_a: UBERON:0001134 ! implied link automatically realized ! skeletal muscle tissue [Term] id: UBERON:0006908 name: fast muscle tissue def: "The paler-colored muscle tissue of some mammals, composed of fast twitch muscle fibers." [BTO:0002318] comment: The fast and slow skeletal muscles are different in terms of twitching speed (Fitts 1994), and they are believed to be derived from distinct myogenic precursors (Stockdale 1992) synonym: "fast muscle" EXACT [BTO:0002318] synonym: "fast skeletal muscle tissue" EXACT [] synonym: "white muscle" RELATED [BTO:0002318] xref: BTO:0002318 is_a: UBERON:0001134 ! implied link automatically realized ! skeletal muscle tissue [Term] id: UBERON:0006909 name: lumen of gut synonym: "digestive tract lumen" EXACT [UBERON:cjm] synonym: "gut cavity" EXACT [BTO:0000349] synonym: "gut lumen" EXACT [FMA:45677] synonym: "lumen of alimentary tract" EXACT [UBERON:cjm] synonym: "lumen of digestive tract" EXACT [UBERON:cjm] xref: BTO:0000349 xref: FMA:45677 is_a: UBERON:0000464 ! implied link automatically realized ! anatomical space relationship: surrounded_by UBERON:0001555 intersection_of: UBERON:0000464 ! anatomical space intersection_of: surrounded_by UBERON:0001555 ! digestive tract [Term] id: UBERON:0006911 name: digestive system fluid or secretion xref: BTO:0000346 xref: MA:0002512 is_a: UBERON:0000463 ! portion of organism substance relationship: secreted_by UBERON:0001007 ! digestive system [Term] id: UBERON:0006912 name: urinary bladder muscularis mucosa synonym: "muscularis mucosa of bladder " BROAD [EMAPA:28619] synonym: "muscularis mucosa of urinary bladder " EXACT [OBOL:automatic] xref: EMAPA:28619 xref: MA:0002490 xref: ncithesaurus:Bladder_Muscularis_Mucosa is_a: UBERON:0004228 ! implied link automatically realized ! urinary bladder smooth muscle is_a: UBERON:0006676 ! implied link automatically realized ! muscularis mucosa relationship: part_of UBERON:0001255 intersection_of: UBERON:0006676 ! muscularis mucosa intersection_of: part_of UBERON:0001255 ! urinary bladder relationship: part_of UBERON:0001261 ! lamina propria of urinary bladder [Term] id: UBERON:0006913 name: lip epithelium xref: BTO:0004468 xref: ZFA:0005334 is_a: UBERON:0003929 ! implied link automatically realized ! gut epithelium is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001833 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001833 ! lip [Term] id: UBERON:0006914 name: squamous epithelium def: "Epithelium composed of flattened platelike cells." [Dorlands_Medical_Dictionary:MerckSource] xref: BTO:0002072 xref: ncithesaurus:Squamous_Epithelium xref: SCTID:40118003 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium [Term] id: UBERON:0006915 name: stratified squamous epithelium def: "Multilaminar epithelium which consists of more than one layer of squamous cells only one layer of which is in contact with a basement membrane. Examples: keratinized stratified squamous epithelium, epithelium of wall of esophagus.[FMA]" [FMA:45563] synonym: "epithelium stratificatum squamosum" EXACT [FMA:45563] xref: FMA:45563 xref: ncithesaurus:Stratified_Squamous_Epithelium is_a: UBERON:0000486 ! implied link automatically realized ! multilaminar epithelium is_a: UBERON:0006914 ! implied link automatically realized ! squamous epithelium [Term] id: UBERON:0006916 name: non-keratinized epithelium of tongue xref: FMA:62130 is_a: UBERON:0006919 ! tongue squamous epithelium [Term] id: UBERON:0006918 name: parakeratinized epithelium of tongue xref: FMA:74908 is_a: UBERON:0000488 ! atypical epithelium is_a: UBERON:0003357 ! implied link automatically realized ! epithelium of tongue relationship: part_of UBERON:0001723 ! tongue [Term] id: UBERON:0006919 name: tongue squamous epithelium comment: note this is a singleton subclass of tongue epithelium in MA synonym: "squamous epithelium of tongue" EXACT [OBOL:automatic] xref: MA:0002786 is_a: UBERON:0003357 ! implied link automatically realized ! epithelium of tongue is_a: UBERON:0006914 ! implied link automatically realized ! squamous epithelium relationship: part_of UBERON:0001723 intersection_of: UBERON:0006914 ! squamous epithelium intersection_of: part_of UBERON:0001723 ! tongue [Term] id: UBERON:0006920 name: esophagus squamous epithelium comment: MA introduces basal and squamous subtypes of esophagus epithelium; consider adding the FMA class 'epithelium of esophagus' here, because it is classified as squamous. BTO also has a singleton subclass synonym: "esophageal squamous epithelium" RELATED [OBOL:automatic] synonym: "squamous epithelium of esophagus" RELATED [OBOL:automatic] synonym: "squamous oesophageal epithelium" RELATED [MA:0001567] xref: BTO:0003635 xref: MA:0001567 xref: ncithesaurus:Esophageal_Squamous_Epithelium is_a: UBERON:0001976 ! implied link automatically realized ! epithelium of esophagus is_a: UBERON:0006914 ! implied link automatically realized ! squamous epithelium relationship: part_of UBERON:0001043 intersection_of: UBERON:0006914 ! squamous epithelium intersection_of: part_of UBERON:0001043 ! esophagus [Term] id: UBERON:0006921 name: stomach squamous epithelium xref: MA:0001611 is_a: UBERON:0000487 ! implied link automatically realized ! simple squamous epithelium is_a: UBERON:0001276 ! epithelium of stomach relationship: part_of UBERON:0000945 intersection_of: UBERON:0006914 ! squamous epithelium intersection_of: part_of UBERON:0000945 ! stomach [Term] id: UBERON:0006922 name: cervix squamous epithelium xref: MA:0001725 xref: ncithesaurus:Cervix_Squamous_Epithelium is_a: UBERON:0004801 ! implied link automatically realized ! cervix epithelium is_a: UBERON:0006914 ! implied link automatically realized ! squamous epithelium relationship: part_of UBERON:0000002 intersection_of: UBERON:0006914 ! squamous epithelium intersection_of: part_of UBERON:0000002 ! uterine cervix [Term] id: UBERON:0006923 name: vagina squamous epithelium comment: note that this is a singleton subclass of vagina epithelium in MA synonym: "vaginal squamous epithelium" EXACT [] xref: MA:0001731 xref: ncithesaurus:Vaginal_Squamous_Epithelium is_a: UBERON:0001344 ! implied link automatically realized ! epithelium of vagina is_a: UBERON:0006915 ! stratified squamous epithelium relationship: part_of UBERON:0000996 intersection_of: UBERON:0006914 ! squamous epithelium intersection_of: part_of UBERON:0000996 ! vagina [Term] id: UBERON:0006924 name: stomach glandular epithelium xref: MA:0002784 is_a: UBERON:0001276 ! implied link automatically realized ! epithelium of stomach is_a: UBERON:0006799 ! implied link automatically realized ! glandular epithelium relationship: part_of UBERON:0000945 intersection_of: UBERON:0006799 ! glandular epithelium intersection_of: part_of UBERON:0000945 ! stomach relationship: part_of UBERON:0006931 ! stomach glandular region mucosa [Term] id: UBERON:0006925 name: digestive gland def: "A gland, such as the liver or pancreas, that secretes into the alimentary canal substances necessary for digestion." [The_American_Heritage_Dictionary_of_the_English_Language:Fourth_Edition._2000.] subset: organ_slim synonym: "digestive system gland" EXACT [AAO:0000130] xref: AAO:0000130 xref: BTO:0000345 is_a: UBERON:0002368 ! implied link automatically realized ! endocrine gland relationship: part_of UBERON:0001007 intersection_of: UBERON:0002368 ! endocrine gland intersection_of: part_of UBERON:0001007 ! digestive system [Term] id: UBERON:0006929 name: glandular columnar epithelium def: "Simple columnar epithelium that constitutes the secretory part of a gland. Examples: epithelium of stomach, luminal epithelium of lactiferous duct.[FMA]" [FMA:64800, FMA:FMA] xref: FMA:64800 is_a: UBERON:0000485 ! simple columnar epithelium is_a: UBERON:0006799 ! implied link automatically realized ! glandular epithelium [Term] id: UBERON:0006930 name: glandular cuboidal epithelium xref: FMA:66809 is_a: UBERON:0000484 ! simple cuboidal epithelium is_a: UBERON:0006799 ! implied link automatically realized ! glandular epithelium [Term] id: UBERON:0006931 name: stomach glandular region mucosa xref: MA:0001614 is_a: UBERON:0001199 ! mucosa of stomach [Term] id: UBERON:0006932 name: vestibular epithelium synonym: "epithelium of vestibular labyrinth" EXACT [OBOL:automatic] synonym: "inner ear vestibular component epithelium" EXACT [EHDAA2:0000834] synonym: "vestibular sensory epithelium" EXACT [FMA:75606] xref: EHDAA2:0000834 xref: FMA:75606 xref: MA:0002892 is_a: UBERON:0006934 ! sensory epithelium is_a: UBERON:0006937 ! implied link automatically realized ! inner ear epithelium relationship: part_of UBERON:0001862 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001862 ! vestibular labyrinth [Term] id: UBERON:0006934 name: sensory epithelium def: "Simple columnar epithelium made up of cells specialized to serve as sensory cells for the reception of external stimuli, as the sensory cells of the cochlea, vestibule, nasal mucosa, and tongue." [BTO:0000314] comment: note that the definition sourced from Dorlands say 'simple columnar', but FMA says atypical synonym: "neuroepithelium" RELATED INCONSISTENT [BTO:0000314] xref: FMA:62410 xref: SCTID:309045006 is_a: UBERON:0000488 ! atypical epithelium is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure disjoint_from: UBERON:0004022 ! embryonic neuroepithelium relationship: part_of UBERON:0000010 ! peripheral nervous system [Term] id: UBERON:0006935 name: crista ampullaris neuroepithelium synonym: "ampullary crest neuroepithelium" RELATED [MA:0002870] synonym: "epithelium of crista of ampulla of semicircular duct of membranous labyrinth" EXACT [FMA:75636] xref: FMA:75636 xref: MA:0002870 is_a: UBERON:0006932 {source="FMA"} ! vestibular epithelium relationship: part_of UBERON:0004721 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0004721 ! crista ampullaris relationship: part_of UBERON:0004721 {source="MA"} ! crista ampullaris [Term] id: UBERON:0006936 name: thymus subcapsular epithelium comment: todo - check whether this is part of the thymus or borders it xref: MA:0000769 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium relationship: part_of UBERON:0002122 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002122 ! capsule of thymus [Term] id: UBERON:0006937 name: inner ear epithelium xref: MA:0001189 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium relationship: part_of UBERON:0001846 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001846 ! internal ear [Term] id: UBERON:0006938 name: pinna surface epithelium xref: EHDAA:8983 xref: EHDAA2:0001470 xref: EMAPA:17592 xref: OG:0000632 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium relationship: part_of UBERON:0001757 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001757 ! pinna [Term] id: UBERON:0006946 name: efferent duct synonym: "efferent ductule" EXACT [FMA:19081] synonym: "vasa efferentia" RELATED [EMAPA:18993] xref: AAO:0010532 xref: EMAPA:18993 xref: FMA:19081 xref: MA:0000398 xref: ncithesaurus:Efferent_Ductule is_a: UBERON:0000058 ! duct is_a: UBERON:0005904 ! implied link automatically realized ! duct of male reproductive system relationship: part_of UBERON:0000079 ! male reproductive system relationship: part_of UBERON:0006947 ! male genital duct [Term] id: UBERON:0006947 name: male genital duct def: "Organ with organ cavity which connects the rete testis to the prostatic urethra. Examples: There are only two male genital ducts, the right and the left male genital ducts.[FMA]" [FMA:55678] xref: FMA:55678 is_a: UBERON:0000058 ! duct is_a: UBERON:0005904 ! implied link automatically realized ! duct of male reproductive system relationship: part_of UBERON:0000079 ! male reproductive system relationship: part_of UBERON:0004054 ! internal male genitalia [Term] id: UBERON:0006948 name: efferent duct epithelium synonym: "epithelium of efferent ductule of testis" EXACT [FMA:19195] xref: FMA:19195 xref: MA:0001734 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0006946 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0006946 ! efferent duct [Term] id: UBERON:0006949 name: cervical loop def: "The cervical loop is the location on an enamel organ in a developing tooth where the outer enamel epithelium and the inner enamel epithelium join. The cervical loop is a histologic term indicating a specific epithelial structure at the apical side of the tooth germ, consisting of loosely aggregated stellate reticulum in the center surrounded by stratum intermedium. These tissues are enveloped by a basal layer of epithelium known on the outside of the tooth as outer enamel epithelium and on the inside as inner enamel epithelium. During root formation the inner layers of epithelium disappear and only the basal layers are left creating Hertwig's Epithelial Root Sheath (HERS). At this point it is usually referred to as HERS instead of the cervical loop to indicate the structural difference[WP]." [Wikipedia:Cervical_loop] is_a: UBERON:0003843 ! tooth epithelium relationship: part_of UBERON:0005176 ! tooth enamel organ [Term] id: UBERON:0006950 name: stellate reticulum alt_id: UBERON:0007441 def: "The stellate reticulum is a group of cells located in the center of the enamel organ of a developing tooth. These cells are star shaped and synthesize glycosaminoglycans. As glycosamingoglycans are produced, water is drawn in between the cells and stretch them apart. As they are moved further away from one another, the stellate reticulum maintain contact with one another through desmosomes, resulting in their unique appearance. stellate reticulum is lost after the first layer of dentin is laid down. this brings cells in inner enamel epithelium closer to blood vessels at the periphery[WP]." [Wikipedia:Stellate_reticulum] xref: BTO:0003910 xref: ncithesaurus:Stellate_Reticulum is_a: UBERON:0003843 ! tooth epithelium relationship: part_of UBERON:0005176 {source="BTO"} ! tooth enamel organ relationship: part_of UBERON:0006949 ! cervical loop [Term] id: UBERON:0006951 name: inner dental epithelium def: "Inner layer of the dental organ, composed of ameloblasts[ZFA]. The inner enamel epithelium, also known as the internal enamel epithelium, is a layer of cells located on the rim nearest the dental papilla of the enamel organ in a developing tooth. This layer is first seen during the bell stage. The location of the enamel organ where the outer and inner enamel epithelium join is called the cervical loop[WP]." [Wikipedia:Inner_enamel_epithelium, ZFIN:curator] synonym: "inner enamel epithelium" EXACT [ZFA:0005136] xref: BTO:0003463 xref: ncithesaurus:Inner_Enamel_Epithelium xref: ZFA:0005136 is_a: UBERON:0003843 {source="ZFA"} ! tooth epithelium relationship: part_of UBERON:0005176 ! tooth enamel organ [Term] id: UBERON:0006952 name: outer dental epithelium def: "Outer layer of the dental organ[ZFA]. a layer of cuboidal cells located on the periphery of the enamel organ in a developing tooth. This layer is first seen during the bell stage." [Wikipedia:Outer_enamel_epithelium, ZFIN:curator] synonym: "external dental epithelium" EXACT [BTO:0003462] synonym: "external enamel epithelium" EXACT [Wikipedia:Outer_enamel_epithelium] synonym: "outer enamel epithelium" EXACT [OBOL:automatic] xref: BTO:0003462 xref: ncithesaurus:Outer_Enamel_Epithelium xref: ZFA:0005137 is_a: UBERON:0003843 {source="ZFA"} ! tooth epithelium relationship: part_of UBERON:0005176 ! tooth enamel organ [Term] id: UBERON:0006953 name: ejaculatory duct epithelium def: "The ejaculatory duct epithelium is composed of cuboidal to columnar cells between or through which project the terminal parts of the ducts of the unicellular prostate glands." [PMID:1238970] comment: TODO: split off insect classes xref: BTO:0002618 xref: TADS:0000490 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0000999 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000999 ! ejaculatory duct [Term] id: UBERON:0006954 name: mammary myoepithelium synonym: "lactiferous ductal myo-epithelium" EXACT [FMA:67798] synonym: "myo-epithelium of lactiferous duct" EXACT [FMA:67798] synonym: "myoepithelium of lactiferous duct" EXACT [FMA:67798] xref: BTO:0002310 xref: FMA:67798 is_a: UBERON:0000420 ! implied link automatically realized ! myoepithelium is_a: UBERON:0003244 ! implied link automatically realized ! epithelium of mammary gland relationship: part_of UBERON:0001911 intersection_of: UBERON:0000420 ! myoepithelium intersection_of: part_of UBERON:0001911 ! mammary gland [Term] id: UBERON:0006955 name: uterine epithelium synonym: "uterus epithelium" RELATED [BTO:0003082] xref: BTO:0003082 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0000995 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000995 ! uterus [Term] id: UBERON:0006956 name: buccal mucosa def: "The inner lining of the cheeks and lips." [Medical_Dictionary:http\://www.medterms.com/] xref: BTO:0003833 xref: FMA:59785 xref: ncithesaurus:Buccal_Mucosa xref: SCTID:16811007 is_a: UBERON:0000344 ! mucosa is_a: UBERON:0003729 ! implied link automatically realized ! mouth mucosa relationship: part_of UBERON:0001567 ! cheek relationship: part_of UBERON:0003729 ! mouth mucosa [Term] id: UBERON:0006957 name: submandibular gland primordium epithelium xref: EHDAA:9257 xref: EHDAA2:0001940 xref: EMAPA:17756 is_a: UBERON:0004809 ! implied link automatically realized ! salivary gland epithelium is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue relationship: part_of UBERON:0006298 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0006298 ! submandibular gland primordium [Term] id: UBERON:0006958 name: great vein of heart def: "The Great Cardiac Vein (left coronary vein) begins at the apex of the heart and ascends along the anterior longitudinal sulcus to the base of the ventricles. It then curves to the left in the coronary sulcus, and reaching the back of the heart, opens into the left extremity of the coronary sinus. It receives tributaries from the left atrium and from both ventricles: one, the left marginal vein, is of considerable size, and ascends along the left margin of the heart." [Wikipedia:Great_cardiac_vein] synonym: "great cardiac vein" EXACT [FMA:4707] xref: EHDAA2:0004508 xref: FMA:4707 xref: MA:0002131 xref: ncithesaurus:Great_Cardiac_Vein xref: SCTID:277728005 is_a: UBERON:0004148 ! coronary vein relationship: in_left_side_of UBERON:0000948 ! heart [Term] id: UBERON:0006959 name: mandible angular process def: "a process which protrudes from the ventral caudal angle of the mandible, and acts as the attachment of the digastric muscle." [http://medical-dictionary.thefreedictionary.com/mandibular+angular+process] synonym: "mandibular angle" RELATED [MA:0002873] synonym: "Mandibular angle" EXACT [FMA:59459] xref: MA:0002873 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:0001684 ! mandible [Term] id: UBERON:0006960 name: ovary stroma def: "The stroma of the ovary is a peculiar soft tissue, abundantly supplied with blood vessels, consisting for the most part of spindle-shaped cells with a small amount of ordinary connective tissue. These cells have been regarded by some anatomists as unstriped muscle cells, which, indeed, they most resemble; by others as connective-tissue cells. On the surface of the organ this tissue is much condensed, and forms a layer composed of short connective-tissue fibers, with fusiform cells between them. The stroma of the ovary may contain interstitial cells resembling those of the testis." [Wikipedia:Stroma_of_ovary] synonym: "interstitial tissue of ovary" EXACT [FMA:18626] synonym: "ovary stroma" EXACT [MA:0002991] synonym: "stroma of the ovary" EXACT [Wikipedia:Stroma_of_ovary] synonym: "stroma ovarica" EXACT [FMA:18626] xref: EMAPA:28880 xref: FMA:18626 xref: MA:0002991 xref: SCTID:259306002 is_a: UBERON:0003891 ! implied link automatically realized ! stroma is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0000992 intersection_of: UBERON:0003891 ! stroma intersection_of: part_of UBERON:0000992 ! female gonad [Term] id: UBERON:0006964 name: pars distalis of adenohypophysis def: "The distal part of adenohypophysis: the part that makes up the main body of the gland." [Dorlands_Medical_Dictionary:MerckSource, Wikipedia:Pars_distalis] subset: vertebrate_core synonym: "anterior lobe" RELATED [MA:0000854] synonym: "pars anterior" BROAD [EHDAA2:0001416, MA:0000854, ZFA:0001195] synonym: "pars anterior of adenohypophysis" EXACT [FMA:74630] synonym: "pars distalis" RELATED [MA:0000854] synonym: "pars distalis (glandula pituitaria)" EXACT [FMA:74630, FMA:TA] synonym: "pars distalis adenohypophyseos" RELATED [BTO:0001787] synonym: "pars distalis adenohypophysis" EXACT [FMA:74630, FMA:TA] synonym: "pars distalis lobi anterioris hypophyseos" RELATED [BTO:0001787] synonym: "pars distalis of anterior lobe of pituitary gland" EXACT [FMA:74630] synonym: "pars glandularis" RELATED [MA:0000854] synonym: "pars glandularis of adenohypophysis" EXACT [FMA:74630] xref: AAO:0010542 xref: BTO:0001787 xref: EHDAA:7532 xref: EHDAA2:0001416 xref: EMAPA:17515 xref: FMA:74630 xref: MA:0000854 xref: OG:0000244 xref: ZFA:0001195 is_a: UBERON:0000483 {source="EHDAA2"} ! epithelium is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0005911 ! implied link automatically realized ! endo-epithelium relationship: part_of UBERON:0002196 {source="MA"} ! adenohypophysis [Term] id: UBERON:0006965 name: vascular cord def: "The vascular cord is the primordial vasculature that will develop into blood vessels by the process of tubulogenesis[GO]. The vascular cord is composed of angioblast or vascular endothelial cells in a solid linear mass called a cord. The cord then undergoes tubulogenesis to form the lumen of the vessels[ZFA]." [GO:0072360, ZFA:0005077] xref: EFO:0003709 xref: ZFA:0005077 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0004535 ! cardiovascular system [Term] id: UBERON:0006966 name: heart capillary def: "." [GO:0003248] is_a: UBERON:0001982 ! implied link automatically realized ! capillary is_a: UBERON:0003498 ! implied link automatically realized ! heart blood vessel relationship: part_of UBERON:0000948 intersection_of: UBERON:0001982 ! capillary intersection_of: part_of UBERON:0000948 ! heart [Term] id: UBERON:0006967 name: horn def: "a pointed projection of the skin on the head of various animals, consisting of a covering of horn (keratin and other proteins) surrounding a core of living bone." [:Horn_(anatomy)] xref: GAID:1225 xref: MESH:A.13.507 is_a: UBERON:0006969 ! cranial appendage [Term] id: UBERON:0006968 name: keratin sheath of horn is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0006967 ! horn [Term] id: UBERON:0006969 name: cranial appendage is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0000033 ! head [Term] id: UBERON:0006970 name: bony core of horn is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:0006967 ! horn [Term] id: UBERON:0006971 name: antler def: "Antlers are the usually large, branching bony appendages on the heads of most deer species." [Wikipedia:Antler] xref: BTO:0001684 xref: GAID:1226 xref: MESH:A.13.507.288 xref: SCTID:410034008 is_a: UBERON:0006969 ! cranial appendage [Term] id: UBERON:0006972 name: nephridium def: "An exceretory tubule that usually opens to the exterior by a nephridiopore. The inner end of the tubule may be blind, ending in flame cells (protonephridium) or may open into the coelom through a ciliated funnel (metanephridium)." [Wikipedia:Nephridium] xref: BTO:0000923 is_a: UBERON:0006555 ! excretory tube [Term] id: UBERON:0006973 name: protonephridium def: "a network of dead-end tubules lacking internal openings found in the Phylums Platyhelminthes, kinorhyncha and Rotifera. The ends are called flame cells (if cilliated) or solenocytes (if flagellated); they function in osmoregulation and ionoregulation. The terminal cells are located at the blind end of the protonephridium. Each cell has one or more cilia and their beating inside the protonephridial tube creates an outward going current and hence a partial pressurization in the blind of the tube. Because of this pressurization drives waste fluids from the inside of the animal, they are pulled through small perforations in the terminal cells and into the protonephridium. The perforations in the terminal cell are large enough for small molecules to pass, but larger proteins are retained within the animal. From the bottom of the protonephridium the solutes are led through the tube, formed by the canal cells, and exits the animal from a small opening formed by the nephridiopore. Selective reabsorption of useful molecules by the canal cells occurs as the solutes pass down the tubule. Protonephridia are generally found in basal organisms such as flatworms. Protonephridia likely first arose as a way to cope with a hypotonic environment by removing excess water from the organism (osmoregulation). Their use as excretory/ionoregulatory structures likely arose secondarily." [Wikipedia:Nephridium#Metanephridia] xref: BILA:0000126 is_a: UBERON:0006972 ! nephridium [Term] id: UBERON:0006974 name: metanephridium def: "a type of excretory gland or nephridium found in many types of invertebrates such as Annelids, Arthropods and Molluscs. It typically consists of a ciliated funnel opening into the body cavity or coelom connected to a duct which may be variously glandularized, folded or expanded (vesiculate) and which typically opens to the organism's exterior. These ciliated tubules pump water carrying surplus ions, metabolic waste, toxins from food, and useless hormones out of the organism through openings known as nephrostomes. This waste is passed out of the body at the nephridiopore. The primary urine produced by filtration of blood (or a similar functioning fluid) is modified into secondary urine through selective reabsorption by the cells lining the metanephridium. In many earthworms the nephridial ducts open into the digestive tract instead, a condition known as enteronephry." [Wikipedia:Nephridium#Metanephridia] xref: BILA:0000127 is_a: UBERON:0006972 ! nephridium [Term] id: UBERON:0006976 name: peptonephridium def: "Organs opening into the buccal cavity of pharynx (supposedly modified nephridia) of invertebrates." [BTO:0004280] subset: organ_slim synonym: "esophageal appendage" RELATED [BTO:0004280] synonym: "oesophageal appendage" RELATED [BTO:0004280] xref: BTO:0004280 is_a: UBERON:0000062 ! organ is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005178 ! implied link automatically realized ! thoracic cavity organ relationship: develops_from UBERON:0006972 ! nephridium relationship: part_of UBERON:0001043 ! esophagus [Term] id: UBERON:0006983 name: anatomical point def: "Non-material anatomical entity of zero dimension, which forms a boundary of an anatomical line or surface." [CARO:MAH] subset: upper_level xref: AAO:0010266 xref: AEO:0000009 xref: BILA:0000009 xref: CARO:0000009 xref: EHDAA2:0003009 xref: FMA:9658 is_a: UBERON:0000466 ! immaterial anatomical entity [Term] id: UBERON:0006984 name: anatomical surface def: "Non-material anatomical entity of two dimensions, that is demarcated by anatomical lines or points on the external or internal surfaces of anatomical structures." [CARO:MAH] subset: upper_level xref: AAO:0010270 xref: BILA:0000010 xref: CARO:0000010 xref: EHDAA2:0003192 xref: FMA:24137 xref: ID:0000000 xref: ncithesaurus:Anatomic_Surface xref: ZFA:0005594 is_a: UBERON:0000466 ! immaterial anatomical entity [Term] id: UBERON:0007005 name: cardiac mesoderm def: "the splanchnic mesoderm in the cardiogenic region where the heart develops; it gives rise to endocardial heart tubes that fuse to form the primordial cardiac tube, the heart primordium[web]. Two migratory heart primordia that move ventrally during the course of neurulation, and then fuse[XAO]." [http://www.drugs.com/dict/cardiogenic-mesoderm.html, XAO:0000235] comment: consider FBbt:00005541 synonym: "cardiogenic mesoderm" RELATED [http://www.drugs.com/dict/cardiogenic-mesoderm.html] synonym: "heart primordia" RELATED [XAO:0000235] xref: AAO:0011021 xref: BILA:0000051 xref: EHDAA:385 xref: OG:0001641 xref: SCTID:360387000 xref: XAO:0000235 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue relationship: develops_from UBERON:0004872 ! splanchnic layer of lateral plate mesoderm relationship: induced_by UBERON:0009881 ! anterior lateral plate mesoderm relationship: part_of UBERON:0004140 ! heart field relationship: part_of UBERON:0009881 ! anterior lateral plate mesoderm [Term] id: UBERON:0007006 name: blastomere def: "a type of cell produced by division of the egg after fertilization." [Wikipedia:Blastomere] xref: BILA:0000052 xref: FMA:72551 xref: OG:0001221 xref: XAO:0003016 xref: ZFA:0000093 is_obsolete: true [Term] id: UBERON:0007010 name: cleaving embryo xref: BILA:0000058 is_a: UBERON:0000922 ! embryo relationship: existence_ends_with UBERON:0000107 relationship: existence_starts_with UBERON:0000107 intersection_of: UBERON:0000468 ! multi-cellular organism intersection_of: existence_ends_with UBERON:0000107 ! cleavage stage intersection_of: existence_starts_with UBERON:0000107 ! cleavage stage [Term] id: UBERON:0007021 name: juvenile organism synonym: "juvenile" BROAD [] xref: BILA:0000076 is_a: UBERON:0000468 ! multi-cellular organism relationship: existence_ends_with UBERON:0000112 relationship: existence_starts_with UBERON:0000112 intersection_of: UBERON:0000468 ! multi-cellular organism intersection_of: existence_ends_with UBERON:0000112 ! juvenile stage intersection_of: existence_starts_with UBERON:0000112 ! juvenile stage [Term] id: UBERON:0007023 name: adult organism synonym: "adult" BROAD [] xref: BILA:0000078 xref: FBbt:00003004 xref: galen:Adult xref: HAO:0000087 xref: ncithesaurus:Adult is_a: UBERON:0000468 ! multi-cellular organism relationship: existence_ends_with UBERON:0000113 relationship: existence_starts_with UBERON:0000113 intersection_of: UBERON:0000468 ! multi-cellular organism intersection_of: existence_ends_with UBERON:0000113 ! post-juvenile adult stage intersection_of: existence_starts_with UBERON:0000113 ! post-juvenile adult stage [Term] id: UBERON:0007026 name: primitive gut xref: BILA:0000084 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: develops_from UBERON:0000925 ! endoderm relationship: develops_into UBERON:0001555 ! digestive tract relationship: existence_starts_during UBERON:0000109 ! gastrula stage [Term] id: UBERON:0007029 name: surface synonym: "skin" RELATED [BILA:0000118] xref: AEO:0000154 xref: BILA:0000118 xref: EHDAA2:0003154 xref: galen:Surface xref: ncithesaurus:Surface is_a: UBERON:0000475 ! organism subdivision [Term] id: UBERON:0007036 name: photosensory system xref: BILA:0000140 is_a: UBERON:0001032 ! sensory system [Term] id: UBERON:0007037 name: mechanosensory system xref: BILA:0000142 is_a: UBERON:0001032 ! implied link automatically realized ! sensory system [Term] id: UBERON:0007094 name: visceral muculature xref: BILA:0000132 is_a: UBERON:0000383 ! musculature of body [Term] id: UBERON:0007095 name: somatic musculature xref: BILA:0000133 is_a: UBERON:0000383 ! musculature of body [Term] id: UBERON:0007096 name: cardiac musculature xref: BILA:0000134 is_a: UBERON:0000383 ! musculature of body [Term] id: UBERON:0007097 name: chordo neural hinge def: "Portion of tissue that is posterior to the developing notochord during tail bud extension." [http://dev.biologists.org/content/136/10/1591.full, ZFA:0001082] comment: In mouse and chick, the derivative of the NSB (with a minor contribution from the CLE), the `chordo-neural-hinge'(CNH) (Cambray and Wilson, 2007; Catala et al., 1995; Charrier et al., 1999), contains progenitors for the ventral neural tube, somites and notochord (Cambray and Wilson, 2002; McGrew et al., 2008). The CNH is continuous with the most recently formed neural tube and notochord (Fig. 2C-D′). By contrast, the tissue immediately caudal to the CNH exclusively produces somites in mouse and chick (McGrew et al., 2008). xref: EFO:0003623 xref: OG:0001382 xref: XAO:0000108 xref: ZFA:0001082 is_a: UBERON:0000479 ! tissue is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue relationship: part_of UBERON:0002533 ! tail bud [Term] id: UBERON:0007098 name: mandibular neural crest def: "Cranial neural crest that migrates into the mandibular arch." [ZFA:0007064] xref: XAO:0000024 xref: ZFA:0007064 is_a: UBERON:0003099 ! cranial neural crest relationship: part_of UBERON:0003852 ! rhombencephalon neural crest [Term] id: UBERON:0007099 name: hyoid neural crest def: "Cranial neural crest that migrates into the hyoid arch." [ZFA:0007065] xref: XAO:0000025 xref: ZFA:0007065 is_a: UBERON:0003099 ! cranial neural crest relationship: part_of UBERON:0003852 ! rhombencephalon neural crest [Term] id: UBERON:0007100 name: circulatory organ def: "A hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood[GO]." [GO:0007507] comment: editor note: we need to find the appropriate GO process to use for the definition - 'blood circulation' may not apply to invertebrates; 'circulatory system process' is circular. Note we cannot use a part_of-based definition as this results in the iris and all vascular elements being categorized as circulatory organs. Taxon notes: note we reserve the subclass 'heart' from the vertebrate multi-chambered heart. "The first heart-like organ is believed to have appeared 500my ago in an ancestral bilaterian". Amniotes: four-chambered heart. Amphibians: two atria, one ventricle, pulmonary; fish: single atrium and ventricle; amphioxus: tubular, non-striated, closed, unidirectional; ascidians: tubular, striated, open, bidirectional; arthropods: tubular, open; C elegans: contractile pharynx; Cnideria: striated muscle cells associated with gastrodermis subset: grouping_class synonym: "adult heart" RELATED [FBbt:00003154] synonym: "cardiac structure" EXACT [] synonym: "dorsal tube" NARROW [Wikipedia:Heart] synonym: "heart" NARROW [GO:0007507] synonym: "heart or heart like organ" EXACT [] xref: ANISEED:1235302 xref: FBbt:00003154 xref: http://www.sciencemag.org/content/313/5795/1922/F1.large.jpg xref: TADS:0000147 is_a: UBERON:0003103 ! compound organ relationship: part_of UBERON:0001009 ! circulatory system [Term] id: UBERON:0007105 name: vitelline duct def: "In the human embryo, the vitelline duct, also known as the omphalomesenteric duct, is a long narrow tube that joins the yolk-sac to the midgut lumen of the developing fetus. It appears at the end of the fourth week, when the yolk-sac presents the appearance of a small pear-shaped vesicle (the umbilical vesicle). The vesicle can be seen in the afterbirth as a small, somewhat oval-shaped body whose diameter varies from 1 mm to 5 mm. It is situated between the amnion and the chorion and may lie on or at a varying distance from the placenta. Generally, the duct fully obliterates (narrows and disappears) during the seventh week, but a failure of the duct to close is termed a vitelline fistula. This results in discharge of meconium from the umbilicus. About two per cent of fetuses exhibit a type of vitelline fistula characterized by persistence of the proximal part of the vitelline duct as a diverticulum protruding from the small intestine, Meckel's diverticulum, which is situated about two feet above the ileocecal junction, and may be attached by a fibrous cord to the abdominal wall at the umbilicus. Sometimes a narrowing of the lumen of the ileum is seen opposite the site of attachment of the duct." [Wikipedia:Vitelline_duct] synonym: "embryonic yolk stalk" RELATED [Wikipedia:Vitelline_duct] synonym: "omphalomesenteric duct" RELATED [Wikipedia:Vitelline_duct] synonym: "omphalomesenteric duct" RELATED [MESH:A.16.254.891] synonym: "yolk duct" RELATED [Wikipedia:Vitelline_duct] synonym: "yolk-stalk" RELATED [Wikipedia:Vitelline_duct] xref: EMAPA:26139 xref: GAID:1314 xref: MESH:A.16.254.891 xref: Wikipedia:Vitelline_duct is_a: UBERON:0000058 ! duct is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: develops_from UBERON:0001045 ! midgut [Term] id: UBERON:0007106 name: chorionic villus def: "One of the minute vascular projections of the fetal chorion that combines with maternal uterine tissue to form the placenta." [BTO:0001161, Wikipedia:Chorionic_villi] synonym: "chorionic villi" RELATED [MESH:A.16.254.403.473.200] synonym: "chorionic villous" RELATED [Wikipedia:Chorionic_villi] synonym: "chorionic villus" RELATED [GAID:1300] synonym: "placental villi" RELATED [GAID:1300] synonym: "placental villus" RELATED [GAID:1300] xref: BTO:0001161 xref: MESH:A.16.254.403.473.200 xref: ncithesaurus:Chorionic_Villus is_a: UBERON:0002050 ! embryonic structure relationship: develops_from UBERON:0004027 {source="Obol"} ! chorionic plate relationship: part_of UBERON:0003124 {source="BTO"} ! chorion [Term] id: UBERON:0007108 name: vernix caseosa def: "An unctuous substance composed of sebum and desquamated epithelial cells, which covers the skin of the fetus." [MESH:A.12.200.946] synonym: "vernix caseosa" RELATED [MESH:A.12.200.946] xref: GAID:1174 xref: MESH:A.12.200.946 xref: ncithesaurus:Vernix_Caseosa is_a: UBERON:0000456 ! secretion relationship: part_of UBERON:0000323 ! late embryo [Term] id: UBERON:0007109 name: meconium def: "A dark greenish mass that accumulates in the bowel during fetal life and is discharged shortly after birth." [BTO:0000838] xref: BTO:0000838 xref: ncithesaurus:Meconium is_a: UBERON:0001988 ! feces relationship: part_of UBERON:0000323 ! late embryo [Term] id: UBERON:0007111 name: douglas' pouch def: "The rectouterine pouch (or rectouterine excavation, rectovaginal, Ehrhardt-Cole Recess or Pouch of Douglas) is the extension of the peritoneal cavity between the rectum and back wall of the uterus in the female human body. The rectouterine pouch is used in the treatment of end-stage renal failure in patients who are treated by peritoneal dialysis. The tip of the dialysis catheter is placed into the deepest point of the pouch. In women it is the deepest point of the peritoneal cavity, posterior to (behind) the uterus and anterior to (in front of) rectum. (The pouch on the other side of the uterus is the vesicouterine excavation. ) It is near the posterior fornix of the vagina. In men, the region corresponding to the rectouterine pouch is the rectovesical excavation, which lies between the urinary bladder and rectum. (There is no equivalent to the vesicouterine excavation.)" [Wikipedia:Recto-uterine_pouch] synonym: "cul de sac of dougla" RELATED [MESH:A.01.047.025.600.225] synonym: "cul-de-sac of dougla" RELATED [MESH:A.01.047.025.600.225] synonym: "douglas cul-de-sac" RELATED [MESH:A.01.047.025.600.225] synonym: "douglas pouch" RELATED [MESH:A.01.047.025.600.225] synonym: "douglas' cul de sac" RELATED [MESH:A.01.047.025.600.225] synonym: "douglas' cul-de-sac" RELATED [MESH:A.01.047.025.600.225] synonym: "douglas' pouch" RELATED [MESH:A.01.047.025.600.225] synonym: "excavatio recto-uterina" EXACT [FMA:14728] synonym: "excavatio rectouterina" EXACT [FMA:14728, FMA:TA] synonym: "recto-uterine pouch" EXACT [FMA:14728] synonym: "rectouterine pouch" EXACT [FMA:14728, MESH:A.01.047.025.600.225] xref: FMA:14728 xref: GAID:20 xref: MESH:A.01.047.025.600.225 xref: SCTID:181447009 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0002358 ! peritoneum [Term] id: UBERON:0007113 name: venom def: "Poisonous animal secretions forming fluid mixtures of many different enzymes, toxins, and other substances. These substances are produced in specialized glands and secreted through specialized delivery systems (nematocysts, spines, fangs, etc.) for disabling prey or predator." [MESH:A.12.200.935] synonym: "venom" RELATED [MESH:A.12.200.935] xref: BTO:0001439 xref: MESH:A.12.200.935 is_a: UBERON:0000456 ! secretion [Term] id: UBERON:0007115 name: deciduous tooth def: "One of the first set of teeth in the growth development of humans and many other mammals[WP]. The 20 teeth of the first dentition, which are shed and replaced by the permanent teeth, usually by the age of six years. All deciduous teeth are normally expected to erupt by the age of two and a half years[MESH]." [MESH:A.14.254.860.700, Wikipedia:Deciduous_teeth] comment: GAT in FMA. synonym: "primary tooth" EXACT [FMA:55655] synonym: "temporary tooth" EXACT [FMA:55655] xref: FMA:55655 xref: GAID:1266 xref: MESH:A.14.254.860.700 xref: ncithesaurus:Temporary_Tooth xref: SCTID:245612004 is_a: UBERON:0001091 ! implied link automatically realized ! calcareous tooth relationship: part_of UBERON:0007116 intersection_of: UBERON:0001091 ! calcareous tooth intersection_of: part_of UBERON:0007116 ! primary dentition [Term] id: UBERON:0007116 name: primary dentition def: "The set of teeth first in order or time of development that will be replaced by permanent dentition upon their loss." [MESH:A.14.254.245] synonym: "baby teeth" EXACT [FMA:75151] synonym: "deciduous dentition" RELATED [GAID:1252] synonym: "deciduous teeth" EXACT [FMA:75151] synonym: "dentes decidui" EXACT [FMA:75151, FMA:TA] synonym: "milk teeth" EXACT [FMA:75151] synonym: "primary teeth" EXACT [GAID:1266] synonym: "primary teeth" EXACT [FMA:75151] synonym: "set of deciduous teeth" EXACT [FMA:75151] synonym: "set of primary teeth" EXACT [FMA:75151] synonym: "tooth of primary dentition" EXACT [] xref: FMA:75151 xref: GAID:1252 xref: MESH:A.14.254.245 is_a: UBERON:0003672 ! dentition [Term] id: UBERON:0007118 name: umbilicus def: "The pit in the center of the abdominal wall marking the point where the umbilical cord entered in the fetus." [MESH:A.01.047.849] synonym: "navel" EXACT [FMA:61584] synonym: "umbilical part of abdomen" EXACT [FMA:61584] synonym: "umbilical region" EXACT [FMA:61584] xref: FMA:61584 xref: GAID:29 xref: galen:Umbilicus xref: MESH:A.01.047.849 xref: ncithesaurus:Umbilicus xref: SCTID:243961003 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0000916 ! abdomen [Term] id: UBERON:0007119 name: neck of femur def: "The femur neck or neck of the femur is a flattened pyramidal process of bone, connecting the femoral head with the femoral shaft, and forming with the latter a wide angle opening medialward." [Wikipedia:Femur_neck] synonym: "femoral neck" RELATED [Wikipedia:Femur_neck] synonym: "femoral neck" EXACT [FMA:42385] synonym: "femur neck" RELATED [Wikipedia:Femur_neck] synonym: "neck of femur" RELATED [Wikipedia:Femur_neck] synonym: "neck of the femur" RELATED [Wikipedia:Femur_neck] xref: FMA:42385 xref: GAID:201 xref: galen:NeckOfFemur xref: MESH:A.02.835.232.500.247.510 xref: ncithesaurus:Femoral_Neck xref: SCTID:361792007 is_a: UBERON:0005055 ! implied link automatically realized ! zone of long bone is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0006863 ! proximal metaphysis of femur [Term] id: UBERON:0007120 name: premolar tooth def: "The premolar teeth or bicuspids are transitional teeth located between the canine and molar teeth. In humans, there are two premolars per quadrant, making eight premolars total in the mouth. They have at least two cusps. Premolars can be considered as a 'transitional tooth' during chewing, or mastication. It has properties of both the anterior canines and posterior molars, and so food can be transferred from the canines to the premolars and finally to the molars for grinding, instead of directly from the canines to the molars. The premolars in humans are the maxillary first premolar, maxillary second premolar, mandibular first premolar, and the mandibular second premolar. There is always one large buccal cusp, especially so in the mandibular first premolar. The lower second premolar almost always presents with two lingual cusps. Premolar teeth by definition are permanent teeth distal to the canines preceded by deciduous molars. In primitive mammals there are four premolars per quadrant. The most mesial two have been lost in Catarrhines. Paleontologists refer to human premolars as Pm3 and Pm4." [Wikipedia:Premolar] synonym: "bicuspid" RELATED [Wikipedia:Premolar] synonym: "bicuspid teeth" RELATED [Wikipedia:Premolar] synonym: "bicuspid tooth" RELATED [Wikipedia:Premolar] synonym: "bicuspids" RELATED [Wikipedia:Premolar] synonym: "biscuspid" RELATED [Wikipedia:Premolar] synonym: "dens premolaris" RELATED [Wikipedia:Premolar] synonym: "dentes premolares" RELATED [Wikipedia:Premolar] synonym: "first bicuspid" RELATED [Wikipedia:Premolar] synonym: "first premolar" RELATED [Wikipedia:Premolar] synonym: "mandibular bicuspid" RELATED [Wikipedia:Premolar] synonym: "maxillary bicuspid" RELATED [Wikipedia:Premolar] synonym: "maxillary premolar" RELATED [Wikipedia:Premolar] synonym: "pm3 %28dentistry%29" RELATED [Wikipedia:Premolar] synonym: "pr%c3%a6molares" RELATED [Wikipedia:Premolar] synonym: "praemolares" RELATED [Wikipedia:Premolar] synonym: "premolar teeth" RELATED [Wikipedia:Premolar] synonym: "premolar tooth" RELATED [Wikipedia:Premolar] synonym: "premolars" RELATED [Wikipedia:Premolar] synonym: "second bicuspid" RELATED [Wikipedia:Premolar] synonym: "second premolar" RELATED [Wikipedia:Premolar] synonym: "secondary premolar tooth" EXACT [FMA:55637] xref: FMA:55637 xref: GAID:1261 xref: MESH:A.14.254.860.150 xref: ncithesaurus:Bicuspid_Tooth xref: SCTID:304572005 is_a: UBERON:0001091 ! calcareous tooth disjoint_from: UBERON:0002135 ! mitral valve [Term] id: UBERON:0007121 name: dermatome segment of skin def: "A dermatome is an area of skin that is mainly supplied by a single spinal nerve. There are eight cervical nerves, twelve thoracic nerves, five lumbar nerves and five sacral nerves. Each of these nerves relays sensation (including pain) from a particular region of skin to the brain[WP]." [Wikipedia:Dermatome_(anatomy)] xref: FMA:80301 is_a: UBERON:0000014 ! zone of skin disjoint_from: UBERON:0004016 ! dermatome [Term] id: UBERON:0007122 name: pharyngeal pouch 1 alt_id: UBERON:0005718 def: "The endoderm lines the future auditory tube (Pharyngotympanic Eustachian tube) , middle ear, mastoid antrum, and inner layer of the tympanic membrane. & origin of Mandibular nerve & Maxillary artery[WP]. The first pouch lies between the first and second arches[PMID]" [PMID:16313389, Wikipedia:Pharyngeal_pouch_(embryology)#First_pouch] comment: we use adjacency relations rather than part_of, as in EHDAA2 synonym: "1st arch branchial pouch" EXACT [EHDAA2:0000013] synonym: "1st arch branchial pouch endoderm" EXACT [EHDAA2:0000016] synonym: "first arch pharyngeal pouch" EXACT [OBOL:automatic] synonym: "first visceral pouch" EXACT [XAO:0000102] synonym: "pharyngeal pouches 1" EXACT PLURAL [ZFA:0001128] synonym: "visceral pouch 1" EXACT [XAO:0000102] xref: AAO:0011114 xref: EFO:0003631 xref: EHDAA2:0000016 xref: EMAPA:16124 xref: ncithesaurus:First_Pharyngeal_Pouch xref: OG:0000970 xref: SCTID:345248006 xref: XAO:0000102 xref: ZFA:0001128 is_a: UBERON:0004117 ! implied link automatically realized ! pharyngeal pouch relationship: adjacent_to UBERON:0003066 relationship: adjacent_to UBERON:0004362 intersection_of: UBERON:0004117 ! pharyngeal pouch intersection_of: adjacent_to UBERON:0003066 ! hyoid arch intersection_of: adjacent_to UBERON:0004362 ! mandibular arch [Term] id: UBERON:0007123 name: pharyngeal pouch 2 alt_id: UBERON:0005715 def: "The second pouch between the second and third arches. Contributes to the middle ear, epithelial lining of Crypts (spaces) of the palatine tonsils, supplied by the facial nerve[WP]" [PMID:16313389, Wikipedia:Pharyngeal_pouch_(embryology)#Second_pouch] synonym: "2nd arch branchial pouch" EXACT [EHDAA2:0000060] synonym: "2nd arch branchial pouch endoderm" EXACT [EHDAA2:0000061] synonym: "pharyngeal pouches 2" EXACT PLURAL [ZFA:0001130] synonym: "second arch pharyngeal pouch" EXACT [OBOL:automatic] synonym: "second visceral pouch" EXACT [XAO:0000247] synonym: "visceral pouch 2" EXACT [XAO:0000247] xref: AAO:0011115 xref: EFO:0003633 xref: EHDAA2:0000060 xref: EHDAA2:0000061 xref: EMAPA:16275 xref: ncithesaurus:Second_Pharyngeal_Pouch xref: OG:0000967 xref: SCTID:345349000 xref: XAO:0000247 xref: ZFA:0001130 is_a: UBERON:0004117 ! implied link automatically realized ! pharyngeal pouch relationship: adjacent_to UBERON:0003066 relationship: adjacent_to UBERON:0003114 intersection_of: UBERON:0004117 ! pharyngeal pouch intersection_of: adjacent_to UBERON:0003066 ! hyoid arch intersection_of: adjacent_to UBERON:0003114 ! pharyngeal arch 3 [Term] id: UBERON:0007124 name: pharyngeal pouch 3 alt_id: UBERON:0005716 def: "The third pouch possesses Dorsal and Ventral wings. Derivatives of the dorsal wings include the inferior parathyroid glands, while the ventral wings fuse to form the cytoreticular cells of the thymus. The main nerve supply to the derivatives of this pouch is Cranial Nerve IX, glossopharyngeal nerve[WP]. The third pouch lies between the third and fourth arches[PMID]." [PMID:16313389, Wikipedia:Pharyngeal_pouch_(embryology)#Third_pouch] synonym: "3rd arch branchial pouch" EXACT [EHDAA2:0000076] synonym: "3rd arch branchial pouch endoderm" EXACT [EHDAA2:0000077] synonym: "pharyngeal pouches 3" EXACT PLURAL [ZFA:0001131] synonym: "third arch pharyngeal pouch" EXACT [OBOL:automatic] synonym: "third visceral pouch" EXACT [XAO:0000251] synonym: "visceral pouch 3" EXACT [XAO:0000251] xref: AAO:0011116 xref: EFO:0003634 xref: EHDAA2:0000076 xref: EHDAA2:0000077 xref: EMAPA:16586 xref: ncithesaurus:Third_Pharyngeal_Pouch xref: OG:0000966 xref: SCTID:345450001 xref: XAO:0000251 xref: ZFA:0001131 is_a: UBERON:0004117 ! implied link automatically realized ! pharyngeal pouch relationship: adjacent_to UBERON:0003114 relationship: adjacent_to UBERON:0003115 intersection_of: UBERON:0004117 ! pharyngeal pouch intersection_of: adjacent_to UBERON:0003114 ! pharyngeal arch 3 intersection_of: adjacent_to UBERON:0003115 ! pharyngeal arch 4 [Term] id: UBERON:0007125 name: pharyngeal pouch 4 def: "A pouch that is situated between the 4th and 5th pharyngeal arch[Bard]. Derivatives include: superior parathyroid glands and ultimobranchial body which forms the parafollicular C-Cells of the thyroid gland. Musculature and cartilage of larynx (along with the sixth pharyngeal pouch)[WP]" [PMID:16313389, Wikipedia:Pharyngeal_pouch_(embryology)#Fourth_pouch] comment: todo - check relationships synonym: "4th arch branchial pouch" EXACT [EHDAA2:0000090] synonym: "4th arch branchial pouch endoderm" EXACT [EHDAA2:0000091] synonym: "fourth arch pharyngeal pouch" EXACT [OBOL:automatic] synonym: "fourth pharyngeal pouch" RELATED [OG:0000971] synonym: "fourth visceral pouch" EXACT [XAO:0000254] synonym: "pharyngeal pouches 4" EXACT PLURAL [ZFA:0001134] synonym: "visceral pouch 4" EXACT [XAO:0000254] xref: AAO:0011117 xref: EFO:0003637 xref: EHDAA2:0000090 xref: EHDAA2:0000091 xref: EMAPA:16766 xref: ncithesaurus:Fourth_Pharyngeal_Pouch xref: OG:0000971 xref: SCTID:362858001 xref: XAO:0000254 xref: ZFA:0001134 is_a: UBERON:0004117 ! pharyngeal pouch [Term] id: UBERON:0007126 name: pharyngeal pouch 5 def: "Rudimentary structure, becomes part of the fourth pouch contributing to thyroid C-cells[WP]." [Wikipedia:Pharyngeal_pouch_(embryology)#Fifth_pouch] synonym: "5th pharyngeal pouch" RELATED [OG:0001206] synonym: "5th visceral pouch" RELATED [OG:0001206] synonym: "fifth pharyngeal pouch" RELATED [OG:0001206] synonym: "fifth visceral pouch" EXACT [XAO:0000255] synonym: "fifth visceral pouch" RELATED [OG:0001206] synonym: "pharyngeal pouches 5" EXACT PLURAL [ZFA:0001133] synonym: "visceral pouch 5" EXACT [XAO:0000255] xref: AAO:0011118 xref: EFO:0003636 xref: ncithesaurus:Fifth_Pharyngeal_Pouch xref: OG:0001206 xref: XAO:0000255 xref: ZFA:0001133 is_a: UBERON:0004117 ! pharyngeal pouch [Term] id: UBERON:0007127 name: pharyngeal pouch 6 def: "Along with the fourth pouch, contributes to the formation of the musculature and cartilage of the larynx[WP]." [Wikipedia:Pharyngeal_pouch_(embryology)#Sixth_pouch] synonym: "pharyngeal pouches 6" EXACT PLURAL [ZFA:0001132] synonym: "sixth visceral pouch" EXACT [XAO:0000265] synonym: "visceral pouch 6" EXACT [XAO:0000265] xref: AAO:0011119 xref: EFO:0003635 xref: XAO:0000265 xref: ZFA:0001132 is_a: UBERON:0004117 ! pharyngeal pouch [Term] id: UBERON:0007128 name: glomeral mesenchyme def: "Portion of tissue that consists of the precursors of the pronephric glomus or glomerulus; derived from the medial portion of the pronephric intermediate mesoderm." [ISBN:0815318960] synonym: "corpuscle" RELATED [XAO:0000110] synonym: "glomerulus" RELATED [XAO:0000110] xref: XAO:0000110 is_a: UBERON:0005423 ! developing anatomical structure relationship: develops_from UBERON:0003064 ! intermediate mesoderm relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0007132 name: head kidney def: "The zebrafish head kidney consists of fused bilateral lobes located in the anterior part of the kidney. It is analogous to the mammalian bone marrow and the primary site of definitive hematopoiesis." [doi:10.1242/dev.00427, ZFIN:ZDB-PUB-040923-1] comment: in GO, head kidney isa pronephros. Modified the ZFA relationships - the HK is derived from the anterior part of the pronephros and persists until adulthood subset: organ_slim synonym: "anterior kidney" EXACT [ZFA:0000669] synonym: "kidney marrow" EXACT [ZFA:0000669] xref: TAO:0000669 xref: ZFA:0000669 is_a: UBERON:0003103 ! compound organ is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004177 ! implied link automatically realized ! hemopoietic organ is_a: UBERON:0005172 ! implied link automatically realized ! abdomen organ is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: develops_from UBERON:0002120 {source="cjm"} ! pronephros relationship: part_of UBERON:0000949 ! endocrine system relationship: part_of UBERON:0002113 ! kidney relationship: part_of UBERON:0002390 ! hematopoietic system [Term] id: UBERON:0007134 name: trunk ganglion def: "Ganglion which is located in the trunk." [ZFIN:curator] synonym: "body ganglion" EXACT [MAT:0000344] synonym: "trunk ganglia" EXACT PLURAL [ZFA:0001573] xref: EFO:0000901 xref: MAT:0000344 xref: MIAA:0000344 xref: TAO:0001573 xref: ZFA:0001573 is_a: UBERON:0000045 ! implied link automatically realized ! ganglion relationship: part_of UBERON:0002100 intersection_of: UBERON:0000045 ! ganglion intersection_of: part_of UBERON:0002100 ! trunk [Term] id: UBERON:0007135 name: neural keel def: "An intermediate stage (between the neural plate and neural rod) during the early segmentation period in the morphogenesis of the central nervous system primordium; the keel is roughly triangular shaped in cross section." [ZFIN:ZDB-PUB-961014-576] synonym: "presumptive central nervous system" RELATED [ZFA:0000131] xref: EFO:0003497 xref: TAO:0000131 xref: ZFA:0000131 xref: ZFIN:ZDB-ANAT-010921-559 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: develops_from UBERON:0003075 ! neural plate [Term] id: UBERON:0007136 name: rectouterine fold def: "These folds of the rectouterine excavation are named the sacrogenital or rectouterine folds. They contain a considerable amount of fibrous tissue and non-striped muscular fibers which are attached to the front of the sacrum and constitute the uterosacral ligaments." [Wikipedia:Recto-uterine_fold] synonym: "fold of douglas" EXACT [FMA:16533] synonym: "plica rectouterina" EXACT [FMA:16533, FMA:TA] synonym: "posterior ligament of uterus" EXACT [FMA:16533] synonym: "recto-uterine fold" EXACT [FMA:16533] synonym: "rectovaginal fold" EXACT [FMA:16533] xref: FMA:16533 xref: SCTID:361301006 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0002358 ! peritoneum [Term] id: UBERON:0007140 name: parietal mesothelium def: "Mesothelium overs the body walls is called the parietal mesothelium" [http://en.wikipedia.org/wiki/Mesothelium] xref: MA:0000566 is_a: UBERON:0001136 ! mesothelium [Term] id: UBERON:0007141 name: visceral mesothelium def: "Mesothelium that covers the internal organs is called visceral mesothelium" [http://en.wikipedia.org/wiki/Mesothelium] xref: MA:0000567 is_a: UBERON:0001136 ! mesothelium [Term] id: UBERON:0007142 name: left internal carotid artery synonym: "arteria caritis interna sinistra" EXACT [FMA:4062] xref: EMAPA:16329 xref: FMA:4062 xref: SCTID:161452006 is_a: UBERON:0001532 ! implied link automatically realized ! internal carotid artery relationship: branch_of UBERON:0001536 intersection_of: UBERON:0001532 ! internal carotid artery intersection_of: branch_of UBERON:0001536 ! left common carotid artery relationship: part_of UBERON:0001536 ! left common carotid artery [Term] id: UBERON:0007143 name: right internal carotid artery synonym: "arteria carotis interna dextra" EXACT [FMA:3949] xref: EMAPA:16330 xref: FMA:3949 xref: SCTID:161251001 is_a: UBERON:0001532 ! implied link automatically realized ! internal carotid artery relationship: branch_of UBERON:0001531 intersection_of: UBERON:0001532 ! internal carotid artery intersection_of: branch_of UBERON:0001531 ! right common carotid artery relationship: part_of UBERON:0001531 ! right common carotid artery [Term] id: UBERON:0007144 name: tail of embryo synonym: "embryo tail" EXACT [FMA:85540] xref: EMAPA:16748 xref: FMA:85540 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0007145 name: dome of diaphragm synonym: "diaphragm dome" EXACT [FMA:13332] xref: EMAPA:18046 xref: FMA:13332 xref: SCTID:244940004 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001103 ! diaphragm [Term] id: UBERON:0007146 name: posterior spinal artery synonym: "dorsal spinal artery" EXACT [FMA:50522] xref: EMAPA:18243 xref: FMA:50522 xref: ncithesaurus:Posterior_Spinal_Artery xref: SCTID:181330009 is_a: UBERON:0002458 ! implied link automatically realized ! spinal artery is_a: UBERON:0004573 ! systemic artery relationship: part_of UBERON:0002458 ! spinal artery [Term] id: UBERON:0007147 name: lumen of midgut synonym: "midgut lumen" EXACT [FMA:54366] xref: EMAPA:18377 xref: FMA:54366 is_a: UBERON:0002553 ! implied link automatically realized ! anatomical cavity relationship: part_of UBERON:0001045 intersection_of: UBERON:0002553 ! anatomical cavity intersection_of: part_of UBERON:0001045 ! midgut [Term] id: UBERON:0007148 name: lumen of hindgut synonym: "hindgut lumen" EXACT [FMA:54367] xref: EMAPA:18396 xref: FMA:54367 is_a: UBERON:0002553 ! implied link automatically realized ! anatomical cavity relationship: part_of UBERON:0001046 intersection_of: UBERON:0002553 ! anatomical cavity intersection_of: part_of UBERON:0001046 ! hindgut [Term] id: UBERON:0007149 name: inferior thyroid artery xref: EMAPA:18623 xref: FMA:10662 xref: ncithesaurus:Inferior_Thyroid_Artery xref: SCTID:303419004 is_a: UBERON:0003847 ! implied link automatically realized ! thyroid artery is_a: UBERON:0004573 ! systemic artery relationship: part_of UBERON:0003847 ! thyroid artery [Term] id: UBERON:0007150 name: superior thyroid artery xref: EMAPA:18624 xref: FMA:49472 xref: ncithesaurus:Superior_Thyroid_Artery xref: SCTID:244218002 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0003847 ! implied link automatically realized ! thyroid artery is_a: UBERON:0004573 ! systemic artery relationship: branch_of UBERON:0001070 ! external carotid artery relationship: part_of UBERON:0003847 ! thyroid artery [Term] id: UBERON:0007151 name: leaflets of mitral valve def: "Leaf of cardiac valve which has as its parts the anterior, and posterior leaflets that is attached to the chorda tendinea of left ventricle and to the frbrous ring of mitral valve.[FMA]" [FMA:7241, FMA:FMA] synonym: "mitral valve leaflet" EXACT [FMA:7241] synonym: "mitral valvular leaflet" EXACT [FMA:7241] xref: EMAPA:18628 xref: FMA:7241 xref: SCTID:244353007 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: attached_to UBERON:0005995 ! mitral valve anulus relationship: part_of UBERON:0002135 ! mitral valve [Term] id: UBERON:0007152 name: inferior sagittal sinus xref: EMAPA:18635 xref: FMA:50768 xref: ncithesaurus:Inferior_Sagittal_Sinus xref: SCTID:279260007 is_a: UBERON:0003499 ! implied link automatically realized ! brain blood vessel is_a: UBERON:0006615 {source="cjm"} ! venous sinus relationship: part_of UBERON:0005486 ! venous dural sinus [Term] id: UBERON:0007153 name: superior epigastric artery xref: EMAPA:18752 xref: FMA:10646 xref: SCTID:244287004 is_a: UBERON:0003834 ! implied link automatically realized ! thoracic segment blood vessel is_a: UBERON:0004573 ! systemic artery relationship: branch_of UBERON:0002456 ! internal thoracic artery relationship: part_of UBERON:0002456 ! internal thoracic artery relationship: part_of UBERON:0006349 ! epigastric artery [Term] id: UBERON:0007154 name: inferior epigastric vein xref: EMAPA:18760 xref: FMA:21162 xref: ncithesaurus:Deep_Epigastric_Vein xref: SCTID:286872000 is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0006356 ! epigastric vein [Term] id: UBERON:0007155 name: superior epigastric vein xref: EMAPA:18761 xref: FMA:4731 xref: SCTID:286596001 is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0006356 ! epigastric vein relationship: tributary_of UBERON:0001589 {source="FMA/obol"} ! internal thoracic vein [Term] id: UBERON:0007156 name: inferior thyroid vein synonym: "inferior thyroid venous tree" EXACT [FMA:4728] synonym: "vena thyroidea inferioris" EXACT [FMA:4728] xref: EMAPA:18763 xref: FMA:4728 xref: SCTID:303423007 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0007157 name: superior thyroid vein xref: EMAPA:18764 xref: FMA:14323 xref: SCTID:303421009 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0007158 name: lumen of anal canal synonym: "anal canal lumen" EXACT [FMA:17357] xref: EMAPA:18836 xref: FMA:17357 is_a: UBERON:0007148 ! implied link automatically realized ! lumen of hindgut relationship: part_of UBERON:0000159 intersection_of: UBERON:0002553 ! anatomical cavity intersection_of: part_of UBERON:0000159 ! anal canal [Term] id: UBERON:0007159 name: lumen of colon synonym: "colon lumen" EXACT [FMA:18374] xref: EMAPA:18945 xref: FMA:18374 xref: SCTID:362156004 is_a: UBERON:0002553 ! implied link automatically realized ! anatomical cavity relationship: part_of UBERON:0001155 intersection_of: UBERON:0002553 ! anatomical cavity intersection_of: part_of UBERON:0001155 ! colon [Term] id: UBERON:0007160 name: inferior petrosal sinus synonym: "sinus petrosal inferior" EXACT [FMA:50770] xref: EMAPA:19234 xref: FMA:50770 xref: SCTID:279263009 is_a: UBERON:0001638 ! vein is_a: UBERON:0003499 ! implied link automatically realized ! brain blood vessel relationship: part_of UBERON:0005486 ! venous dural sinus [Term] id: UBERON:0007161 name: medial arcuate ligament xref: EMAPA:19237 xref: FMA:58282 is_a: UBERON:0000211 ! ligament [Term] id: UBERON:0007162 name: lateral arcuate ligament xref: EMAPA:19238 xref: FMA:58283 is_a: UBERON:0000211 ! ligament [Term] id: UBERON:0007163 name: superior meatus def: "The superior meatus, the smallest of the three meatuses of the nose, occupies the middle third of the lateral wall of the nasal cavity. It lies between the superior nasal conchC& and middle nasal conchC&; the sphenopalatine foramen opens into it behind, and the posterior ethmoidal cells in front. The sphenoidal sinus opens into a recess, the sphenoethmoidal recess, which is placed above and behind the superior concha." [Wikipedia:Superior_nasal_meatus] comment: todo - check FMA synonym: "superior nasal meatus" RELATED [Wikipedia:Superior_nasal_meatus] xref: EMAPA:19276 xref: FMA:53138 xref: FMA:57480 is_a: UBERON:0002553 ! anatomical cavity [Term] id: UBERON:0007164 name: distal radio-ulnar joint synonym: "articulation radioulnaris distalis" EXACT [FMA:35290] synonym: "distal radioulnar joint" EXACT [FMA:35290] synonym: "inferior radioulnar joint" EXACT [FMA:35290] xref: EMAPA:19316 xref: FMA:35290 xref: SCTID:182170009 is_a: UBERON:0001528 ! radio-ulnar joint [Term] id: UBERON:0007165 name: proximal radio-ulnar joint synonym: "superior radioulnar joint" EXACT [FMA:38860] xref: EMAPA:19317 xref: FMA:38860 xref: SCTID:361837005 is_a: UBERON:0001528 ! radio-ulnar joint [Term] id: UBERON:0007166 name: left dome of diaphragm synonym: "left dome of diaphragm viewed radiologically" EXACT [FMA:13334] xref: EMAPA:25047 xref: FMA:13334 xref: SCTID:244941000 is_a: UBERON:0007145 ! dome of diaphragm [Term] id: UBERON:0007167 name: right dome of diaphragm synonym: "right dome of diaphragm viewed radiologically" EXACT [FMA:13333] xref: EMAPA:25048 xref: FMA:13333 xref: SCTID:244942007 is_a: UBERON:0007145 ! dome of diaphragm [Term] id: UBERON:0007168 name: long head of biceps brachii def: "The long head originates on the supraglenoid tubercle just above the shoulder joint from where its tendon passes down along the intertubercular groove of the humerus into the joint capsule of the shoulder joint. [1] When the humerus is in motion, the tendon of the long head is held firmly in place in the intertubercular groove by the greater and lesser tubercles and the overlying transverse humeral ligament. During the motion from external to internal rotation, the tendon is forced medially against the lesser tubercle and superiorly against the transverse ligament." [Wikipedia:Biceps_brachii_muscle#Origin_and_insertion] synonym: "caput longum (musculus biceps brachii)" EXACT [FMA:37683] xref: EMAPA:25054 xref: FMA:37683 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0000043 ! tendon relationship: part_of UBERON:0001507 ! biceps brachii [Term] id: UBERON:0007169 name: short head of biceps brachii def: "Proximally (towards the body), the short head of the biceps attaches to (originates from) the coracoid process at the top of the scapula." [Wikipedia:Biceps_brachii_muscle#Origin_and_insertion] xref: EMAPA:25055 xref: FMA:37682 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0000043 ! tendon relationship: part_of UBERON:0001507 ! biceps brachii [Term] id: UBERON:0007170 name: squamous part of occipital bone synonym: "occipital squama" EXACT [FMA:52860] synonym: "squama of occipital bone" EXACT [FMA:52860] xref: EMAPA:25113 xref: FMA:52860 xref: SCTID:139077005 is_a: UBERON:0000032 ! implied link automatically realized ! cranial structure is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001676 ! occipital bone [Term] id: UBERON:0007171 name: border of scapula synonym: "scapular border" EXACT [FMA:23797] xref: EMAPA:25124 xref: FMA:23797 is_a: UBERON:0006800 ! anatomical line relationship: part_of UBERON:0001124 ! tetrapod scapula [Term] id: UBERON:0007172 name: angle of scapula synonym: "scapular angle" EXACT [FMA:23800] xref: EMAPA:25125 xref: FMA:23800 is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001124 ! tetrapod scapula [Term] id: UBERON:0007173 name: lateral border of scapula synonym: "axillary border of scapula" EXACT [FMA:23239] synonym: "lateral border of scapula" EXACT [FMA:23239] synonym: "margo lateralis (scapula)" EXACT [FMA:23239] synonym: "margo lateralis scapulae" EXACT [FMA:23239, FMA:TA] xref: EMAPA:25126 xref: FMA:23239 is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001124 ! tetrapod scapula [Term] id: UBERON:0007174 name: medial part of scapula synonym: "margo medialis (scapula)" EXACT [FMA:23242] synonym: "margo medialis scapulae" EXACT [FMA:23242, FMA:TA] synonym: "medial border of scapula" EXACT [FMA:23242] synonym: "vertebral border of scapula" EXACT [FMA:23242] xref: EMAPA:25127 xref: FMA:23242 xref: SCTID:368187009 is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001124 ! tetrapod scapula [Term] id: UBERON:0007175 name: inferior angle of scapula synonym: "angulus inferior (scapula)" EXACT [FMA:13315] xref: EMAPA:25128 xref: FMA:13315 is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001124 ! tetrapod scapula [Term] id: UBERON:0007176 name: superior angle of scapula synonym: "angulus superior (scapula)" EXACT [FMA:23248] xref: EMAPA:25129 xref: FMA:23248 is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001124 ! tetrapod scapula [Term] id: UBERON:0007177 name: lamina propria of mucosa of colon synonym: "colonic lamina propria" EXACT [FMA:15657] synonym: "lamina propria of colonic mucosa" EXACT [FMA:15657] synonym: "lamina propria of colonic mucous membrane" EXACT [FMA:15657] xref: EMAPA:27395 xref: FMA:15657 xref: SCTID:113284008 is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure is_a: UBERON:0004780 ! implied link automatically realized ! gastrointestinal system lamina propria relationship: part_of UBERON:0000317 intersection_of: UBERON:0000030 ! lamina propria intersection_of: part_of UBERON:0000317 ! colonic mucosa [Term] id: UBERON:0007178 name: muscularis mucosa of mucosa of colon synonym: "lamina muscularis of colonic mucosa" EXACT [FMA:15656] synonym: "lamina muscularis of colonic mucous membrane" EXACT [FMA:15656] xref: EMAPA:27399 xref: FMA:15656 xref: SCTID:885000 is_a: UBERON:0001239 ! implied link automatically realized ! muscularis mucosae of large intestine relationship: part_of UBERON:0000317 intersection_of: UBERON:0006676 ! muscularis mucosa intersection_of: part_of UBERON:0000317 ! colonic mucosa [Term] id: UBERON:0007179 name: basal cell layer of urothelium synonym: "basal cell layer of uroepithelium" EXACT [FMA:84154] xref: EMAPA:28806 xref: FMA:84154 is_a: UBERON:0000119 ! cell layer is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0000365 ! urothelium [Term] id: UBERON:0007180 name: atretic follicle of ovary synonym: "folliculus atreticus (Ovarium)" EXACT [FMA:18697] xref: EMAPA:29874 xref: FMA:18697 xref: SCTID:259073003 is_a: UBERON:0001305 ! ovarian follicle [Term] id: UBERON:0007181 name: serosa of infundibulum of uterine tube synonym: "serosa of infundibulum of fallopian tube" EXACT [FMA:18324] synonym: "serosa of infundibulum of oviduct" EXACT [FMA:18324] xref: EMAPA:29903 xref: FMA:18324 is_a: UBERON:0000042 ! implied link automatically realized ! serous membrane is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure is_a: UBERON:0005983 ! implied link automatically realized ! heart layer relationship: part_of UBERON:0003984 intersection_of: UBERON:0000042 ! serous membrane intersection_of: part_of UBERON:0003984 ! uterine tube infundibulum relationship: part_of UBERON:0003983 ! conus arteriosus [Term] id: UBERON:0007182 name: muscle layer of infundibulum of uterine tube synonym: "muscle layer of infundibulum of fallopian tube" EXACT [FMA:18336] synonym: "muscle layer of infundibulum of oviduct" EXACT [FMA:18336] synonym: "muscularis of infundibulum of uterine tube" EXACT [FMA:18336] xref: EMAPA:31264 xref: FMA:18336 is_a: UBERON:0006642 ! implied link automatically realized ! muscle layer of oviduct relationship: part_of UBERON:0003984 intersection_of: UBERON:0006660 ! muscle layer intersection_of: part_of UBERON:0003984 ! uterine tube infundibulum relationship: part_of UBERON:0003983 ! conus arteriosus [Term] id: UBERON:0007185 name: pericardio-peritoneal canal mesothelium xref: EHDAA2:0001442 xref: EMAPA:16284 xref: OG:0000447 is_a: UBERON:0001136 ! implied link automatically realized ! mesothelium is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue relationship: part_of UBERON:0006275 intersection_of: UBERON:0001136 ! mesothelium intersection_of: part_of UBERON:0006275 ! pericardio-peritoneal canal [Term] id: UBERON:0007186 name: pericardial visceral mesothelium xref: EMAPA:16589 xref: FMA:19741 xref: OG:0000778 is_a: UBERON:0007141 ! implied link automatically realized ! visceral mesothelium relationship: part_of UBERON:0002407 intersection_of: UBERON:0007141 ! visceral mesothelium intersection_of: part_of UBERON:0002407 ! pericardium [Term] id: UBERON:0007187 name: pericardial parietal mesothelium xref: EMAPA:16588 xref: FMA:19742 is_a: UBERON:0007140 ! implied link automatically realized ! parietal mesothelium relationship: part_of UBERON:0002407 intersection_of: UBERON:0007140 ! parietal mesothelium intersection_of: part_of UBERON:0002407 ! pericardium [Term] id: UBERON:0007188 name: mesothelium of serous pericardium synonym: "mesothelium of pericardium" EXACT [FMA:18149] synonym: "pericardial mesothelium" EXACT [FMA:18149] synonym: "serous pericardium mesothelium" EXACT [FMA:18149] xref: BTO:0003157 xref: EMAPA:16133 xref: FMA:18149 xref: SCTID:67300002 is_a: UBERON:0001136 ! implied link automatically realized ! mesothelium relationship: part_of UBERON:0002357 intersection_of: UBERON:0001136 ! mesothelium intersection_of: part_of UBERON:0002357 ! serous pericardium [Term] id: UBERON:0007190 name: paracentral gyrus xref: FMA:77537 is_a: UBERON:0000200 ! gyrus [Term] id: UBERON:0007191 name: anterior paracentral gyrus xref: FMA:77537 is_a: UBERON:0007190 ! paracentral gyrus [Term] id: UBERON:0007192 name: posterior paracentral gyrus xref: FMA:77538 is_a: UBERON:0007190 ! paracentral gyrus [Term] id: UBERON:0007193 name: orbital gyrus xref: FMA:256194 xref: SCTID:280372002 is_a: UBERON:0000200 ! gyrus [Term] id: UBERON:0007194 name: vesicular gland def: "The vesicular gland is part of the male reproductive system. The vesicular gland contributes fluids, energy substrates, and buffers to semen. It can be found near the Coagulating gland, which also belongs to the reproductive system." [BTO:0003717] comment: todo - check this agaist seminal vesicle xref: BTO:0003717 xref: MA:0000405 xref: ncithesaurus:Vesicular_Gland is_a: UBERON:0005399 ! male reproductive gland [Term] id: UBERON:0007195 name: stroma of bone marrow def: "The stroma of the bone marrow is all tissue not directly involved in the primary function of hematopoiesis. The yellow bone marrow belongs here, and makes the majority of the bone marrow stroma, in addition to stromal cells located in the red bone marrow. Yellow bone marrow is found in the Medullary cavity. Still, the stroma is indirectly involved in hematopoiesis, since it provides the hematopoietic microenvironment that facilitates hematopoiesis by the parenchymal cells. For instance, they generate colony stimulating factors, affecting hematopoiesis." [Wikipedia:Bone_marrow#Stroma] synonym: "bone marrow stroma" EXACT [FMA:21426] xref: FMA:21426 is_a: UBERON:0002384 ! connective tissue is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0002371 ! bone marrow [Term] id: UBERON:0007196 name: tracheobronchial tree def: "the structure from the trachea, bronchi, and bronchioles that forms the airways that supply air to the lungs. The lining of the tracheobronchial tree consists of ciliated columnar epithelial cells." [Wikipedia:Tracheobronchial_tree] subset: organ_slim xref: FMA:7393 xref: SCTID:361384001 is_a: UBERON:0000062 ! organ is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: has_part UBERON:0007592 {source="Wikipedia"} ! ciliated columnar epithelium relationship: part_of UBERON:0001558 ! lower respiratory tract [Term] id: UBERON:0007197 name: hermaphroditic organism def: "Multi-cellular organism that can produce both male and female gametes." [CARO:MAH] synonym: "dioecious organism" RELATED [BILA:0000029] synonym: "hermaphrodite" RELATED [WBbt:0007849] xref: AAO:0010035 xref: BILA:0000029 xref: CARO:0000029 xref: HAO:0000029 xref: TADS:0000601 xref: WBbt:0007849 is_a: UBERON:0000468 ! multi-cellular organism [Term] id: UBERON:0007198 name: hermaphrodite anatomical structure alt_id: AEO:0000177 def: "An anatomical structure present only in hermaphrodites." [JB:DEF] synonym: "hermaphrodite-specific" RELATED [WBbt:0005758] xref: EHDAA2:0003177 xref: WBbt:0005758 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0007197 ! hermaphroditic organism [Term] id: UBERON:0007204 name: brachiocephalic vasculature is_a: UBERON:0002049 ! vasculature [Term] id: UBERON:0007213 name: mesenchyme derived from head neural crest subset: vertebrate_core synonym: "head mesenchyme from neural crest" EXACT [EHDAA2:0000735] xref: EFO:0003572 xref: EHDAA2:0000735 xref: EMAPA:16169 xref: ZFA:0000787 is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0005253 ! head mesenchyme relationship: develops_from UBERON:0003099 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: develops_from UBERON:0003099 ! cranial neural crest [Term] id: UBERON:0007214 name: mesenchyme derived from trunk neural crest subset: vertebrate_core synonym: "trunk mesenchyme from neural crest" EXACT [EHDAA2:0002093] xref: EHDAA2:0002093 xref: EMAPA:16182 xref: ZFA:0000999 is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0005256 ! trunk mesenchyme relationship: develops_from UBERON:0003083 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: develops_from UBERON:0003083 ! trunk neural crest [Term] id: UBERON:0007215 name: trabecula cranii def: "Paired thin medially aligned bar of cartilage that extends from the anterior end of the chondrocranium to just anterior to the anterior end of the notochord. The posterior ends of the trabeculae cranii are continuous with the parachordal cartilages, and they enclose the hypophyseal fenestra." [ZFIN:curator] comment: A paired cartilaginous element appearing in the preotic section of the head at the border between the brain and visceral structures (The Trabecula cranii: development and homology of an enigmatic vertebrate head structure - Cerny et al 2006) synonym: "trabeculae cranii" EXACT PLURAL [ZFA:0001507] xref: TAO:0001507 xref: ZFA:0001507 is_a: UBERON:0003932 ! chondrocranium cartilage relationship: part_of UBERON:0005945 ! neurocranial trabecula [Term] id: UBERON:0007220 name: late embryonic stage synonym: "embryo late (growth) stage" EXACT [MIAA:0000399] synonym: "embryo late growth stage" RELATED [BTO:0000449] synonym: "embryo late stage" RELATED [BTO:0000449] synonym: "fetal stage" NARROW SENSU [UBERON:cjm] synonym: "fetus" NARROW [MIAA:0000399] synonym: "fetus stage" NARROW SENSU [UBERON:cjm] xref: EV:0300011 xref: EVM:2990031 xref: FBdv:00005333 xref: MIAA:0000399 xref: OGES:000023 xref: SCTID:367619004 is_a: UBERON:0000067 ! implied link automatically realized ! embryo stage part is_a: UBERON:0000105 ! life cycle stage relationship: has_end UBERON:0000103 ! life cycle stage boundary relationship: part_of UBERON:0000068 ! embryo stage [Term] id: UBERON:0007221 name: neonate stage def: "Of or pertaining to the period of time immediately following birth, or to the newborn." [http://en.wiktionary.org/wiki/neonatal, Wikipedia:Infant] synonym: "fledgling stage" NARROW SENSU [UBERON:cjm] synonym: "hatchling stage" NARROW SENSU [UBERON:cjm] synonym: "infant stage" NARROW SENSU [UBERON:cjm] synonym: "neonatal stage" EXACT [OBOL:automatic] synonym: "nestling stage" NARROW SENSU [UBERON:cjm] synonym: "newborn stage" RELATED [UBERON:cjm] xref: BTO:0001762 xref: EV:0300037 xref: NIF_Organism:birnlex_695 xref: OGES:000025 is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000112 ! juvenile stage [Term] id: UBERON:0007222 name: late adult stage synonym: "elderly" RELATED [EV:0300123] synonym: "elderly stage" RELATED [EV:0300123] synonym: "geriatric" RELATED [EV:0300123] synonym: "geriatric stage" RELATED [EV:0300123] xref: EV:0300123 xref: ncithesaurus:Elderly xref: NIF_Organism:birnlex_691 is_a: UBERON:0000113 ! post-juvenile adult stage [Term] id: UBERON:0007223 name: osseus cochlea def: "The osseous cochlea is the bony foundation that forms the small shell arrangement for the cochlear nerve." [http://www.innerbody.com/image_nerv14/nerv175.html] comment: todo - check this. in MA, cochlea is not part of the bony labyrinth xref: MA:0000239 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001839 ! bony labyrinth relationship: part_of UBERON:0001844 ! cochlea [Term] id: UBERON:0007224 name: medial entorhinal cortex def: "The entorhinal cortex (EC) is an important memory center in the brain. In rodents, the EC is located at the caudal end of the temporal lobe. In primates it is located at the rostral end of the temporal lobe and stretches dorsolaterally. It is usually divided into medial and lateral regions with three bands with distinct properties and connectivity running perpendicular across the whole area." [BTO:0004347] xref: BTO:0004346 xref: MA:0000922 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0002728 ! entorhinal area relationship: part_of UBERON:0002895 ! secondary olfactory cortex [Term] id: UBERON:0007225 name: lateral entorhinal cortex def: "The entorhinal cortex (EC) is an important memory center in the brain. In rodents, the EC is located at the caudal end of the temporal lobe. In primates it is located at the rostral end of the temporal lobe and stretches dorsolaterally. It is usually divided into medial and lateral regions with three bands with distinct properties and connectivity running perpendicular across the whole area." [BTO:0004347] synonym: "Entorhinal area, lateral part" EXACT [ABA:ENTl] xref: ABA:ENTl xref: BTO:0004347 xref: MA:0000911 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0002728 ! entorhinal area relationship: part_of UBERON:0002895 ! secondary olfactory cortex [Term] id: UBERON:0007227 name: superior vestibular nucleus def: "The superior vestibular nucleus is the dorso-lateral part of the vestibular nucleus and receives collaterals and terminals from the ascending branches of the vestibular nerve. Its axons terminate in much the same manner as do those from the lateral nucleus." [Wikipedia:Superior_vestibular_nucleus] synonym: "Bechterew's nucleus" RELATED [Wikipedia:Superior_vestibular_nucleus] synonym: "nucleus of Bechterew" EXACT [FMA:54617] xref: ABA:SUV xref: BM:Me-VS-VSS xref: BTO:0004372 xref: EV:0100257 xref: FMA:54617 xref: ncithesaurus:Superior_Vestibular_Nucleus is_a: UBERON:0007228 ! vestibular nucleus relationship: spatially_disjoint_from UBERON:0001721 {source="ABA"} ! inferior vestibular nucleus relationship: spatially_disjoint_from UBERON:0001722 {source="ABA"} ! medial vestibular nucleus relationship: spatially_disjoint_from UBERON:0007230 {source="ABA"} ! lateral vestibular nucleus [Term] id: UBERON:0007228 name: vestibular nucleus def: "The vestibular nuclei are the cranial nuclei for the vestibular nerve. [WP,unvetted]." [Wikipedia:Vestibular_nucleus] comment: In Terminologia Anatomica they are grouped in both the pons and medulla. synonym: "vestibular nucleus of acoustic nerve" EXACT [FMA:54602] synonym: "vestibular nucleus of eighth cranial nerve" EXACT [FMA:54602] xref: EV:0100254 xref: FMA:54602 xref: ncithesaurus:Vestibular_Nucleus xref: SCTID:362462004 is_a: UBERON:0000126 ! cranial nerve nucleus is_a: UBERON:0002584 ! implied link automatically realized ! regional part of vestibular nuclear complex is_a: UBERON:0007635 ! implied link automatically realized ! nucleus of medulla oblongata relationship: part_of UBERON:0002673 ! vestibular nuclear complex [Term] id: UBERON:0007230 name: lateral vestibular nucleus def: "The lateral vestibular nucleus (Deitersbs nucleus) is the continuation upward and lateralward of the principal nucleus, and in it terminate many of the ascending branches of the vestibular nerve." [Wikipedia:Lateral_vestibular_nucleus] synonym: "Deiter's nucleus" EXACT [FMA:54614] synonym: "Deiters' nucleus" EXACT [FMA:54614] synonym: "lateral nucleus of Deiters" EXACT [FMA:54614] synonym: "nucleus of Deiters" EXACT [FMA:54614] xref: ABA:LAV xref: BM:Me-VS-VSL xref: BTO:0004370 xref: FMA:54614 xref: GAID:603 xref: MESH:A.08.186.211.132.810.428.600.800.800 xref: ncithesaurus:Lateral_Vestibular_Nucleus xref: SCTID:280176007 is_a: UBERON:0007228 ! vestibular nucleus relationship: spatially_disjoint_from UBERON:0001721 {source="ABA"} ! inferior vestibular nucleus relationship: spatially_disjoint_from UBERON:0001722 {source="ABA"} ! medial vestibular nucleus relationship: spatially_disjoint_from UBERON:0007227 {source="ABA"} ! superior vestibular nucleus [Term] id: UBERON:0007232 name: 2 cell stage synonym: "NF stage 2 (2-cell)" NARROW SENSU [XAO:1000011] synonym: "two-cell stage" EXACT [OBOL:automatic] xref: EMAPA:16036 xref: XAO:1000011 xref: ZFS:0000002 is_a: UBERON:0000067 ! implied link automatically realized ! embryo stage part is_a: UBERON:0000105 ! life cycle stage relationship: directly_preceded_by UBERON:0000106 ! zygote stage relationship: part_of UBERON:0000107 ! cleavage stage [Term] id: UBERON:0007233 name: 4 cell stage synonym: "four-cell stage" EXACT [OBOL:automatic] synonym: "NF stage 3 (4-cell)" NARROW SENSU [XAO:1000013] xref: XAO:1000013 xref: ZFS:0000003 is_a: UBERON:0000067 ! implied link automatically realized ! embryo stage part is_a: UBERON:0000105 ! life cycle stage relationship: directly_preceded_by UBERON:0007232 ! 2 cell stage relationship: part_of UBERON:0000107 ! cleavage stage relationship: starts UBERON:0007234 ! 4-8 cell stage [Term] id: UBERON:0007234 name: 4-8 cell stage synonym: "four-eight cell stage" EXACT [OBOL:automatic] xref: EMAPA:16037 is_a: UBERON:0000067 ! implied link automatically realized ! embryo stage part is_a: UBERON:0000105 ! life cycle stage relationship: directly_preceded_by UBERON:0007232 ! 2 cell stage relationship: part_of UBERON:0000107 ! cleavage stage [Term] id: UBERON:0007236 name: 8 cell stage synonym: "eight-cell stage" EXACT [OBOL:automatic] synonym: "NF stage 4 (8-cell)" NARROW SENSU [XAO:1000014] xref: XAO:1000014 xref: ZFS:0000004 is_a: UBERON:0000067 ! implied link automatically realized ! embryo stage part is_a: UBERON:0000105 ! life cycle stage relationship: directly_preceded_by UBERON:0007233 ! 4 cell stage relationship: finishes UBERON:0007234 ! 4-8 cell stage relationship: part_of UBERON:0000107 ! cleavage stage [Term] id: UBERON:0007237 name: 1st arch mandibular component xref: EHDAA:583 xref: EHDAA2:0000031 xref: EMAPA:16382 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0004362 ! mandibular arch [Term] id: UBERON:0007238 name: 1st arch maxillary component xref: EHDAA:595 xref: EHDAA2:0000038 xref: EMAPA:16388 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0004362 ! mandibular arch [Term] id: UBERON:0007239 name: tunica media of artery synonym: "arterial media" EXACT [EV:0100029] synonym: "tunica media (arteriae)" EXACT [FMA:14273] xref: EV:0100029 xref: FMA:14273 xref: SCTID:84300001 is_a: UBERON:0002522 ! implied link automatically realized ! tunica media is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001637 intersection_of: UBERON:0002522 ! tunica media intersection_of: part_of UBERON:0001637 ! artery relationship: part_of UBERON:0000415 ! artery wall [Term] id: UBERON:0007240 name: tunica adventitia of artery synonym: "arterial adventitia" EXACT [EV:0100030] synonym: "tunica externa (adventitia)(arteriae)" EXACT [FMA:14274] xref: EV:0100030 xref: FMA:14274 xref: SCTID:113261001 is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0005734 ! implied link automatically realized ! tunica adventitia relationship: part_of UBERON:0001637 intersection_of: UBERON:0005734 ! tunica adventitia intersection_of: part_of UBERON:0001637 ! artery relationship: part_of UBERON:0000415 ! artery wall [Term] id: UBERON:0007241 name: tunica adventitia of vein synonym: "tunica externa (adventitia)(venae)" EXACT [FMA:14355] synonym: "venous adventitia" EXACT [EV:0100034] xref: EV:0100034 xref: FMA:14355 xref: SCTID:13202006 is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0005734 ! implied link automatically realized ! tunica adventitia relationship: part_of UBERON:0001638 intersection_of: UBERON:0005734 ! tunica adventitia intersection_of: part_of UBERON:0001638 ! vein [Term] id: UBERON:0007242 name: tunica intima of vein synonym: "tunica interna (intima)(venae)" EXACT [FMA:14353] synonym: "venous intima" EXACT [EV:0100032] xref: EV:0100032 xref: FMA:14353 xref: SCTID:2436009 is_a: UBERON:0002523 ! implied link automatically realized ! tunica intima relationship: part_of UBERON:0001638 intersection_of: UBERON:0002523 ! tunica intima intersection_of: part_of UBERON:0001638 ! vein [Term] id: UBERON:0007243 name: tunica media of vein synonym: "tunica media (venae)" EXACT [FMA:14354] synonym: "venous media" EXACT [EV:0100033] xref: EV:0100033 xref: FMA:14354 xref: SCTID:42049001 is_a: UBERON:0002522 ! implied link automatically realized ! tunica media is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001638 intersection_of: UBERON:0002522 ! tunica media intersection_of: part_of UBERON:0001638 ! vein [Term] id: UBERON:0007244 name: inferior olivary nucleus def: "The inferior olivary nucleus is the largest nucleus situated in the olivary body, part of the medulla oblongata." [Wikipedia:Inferior_olivary_nucleus] synonym: "inferior olive" RELATED [Wikipedia:Inferior_olivary_nucleus] xref: BTO:0003844 xref: EMAPA:19241 xref: OG:0001380 xref: SCTID:369066005 is_a: UBERON:0002574 ! implied link automatically realized ! regional part of inferior olivary complex is_a: UBERON:0007635 ! implied link automatically realized ! nucleus of medulla oblongata relationship: part_of UBERON:0002127 intersection_of: UBERON:0002308 ! nucleus of brain intersection_of: part_of UBERON:0002127 ! inferior olivary complex [Term] id: UBERON:0007245 name: nuclear complex of neuraxis def: "Internal gray matter component which consists of an assemblage of nuclei of neuraxis. Example: cerebellar nuclear complex, Vestibular nuclear complex.[FMA]" [FMA:84059, FMA:FMA] comment: todo - move existing complex classes currently under nucleus to be under this class xref: FMA:84059 is_a: UBERON:0002020 ! gray matter of neuraxis [Term] id: UBERON:0007247 name: superior olivary nucleus synonym: "nucleus of superior olivary complex" EXACT [FMA:72246] synonym: "superior olive" RELATED [MA:0001026] xref: FMA:72246 xref: MA:0001026 xref: OG:0001381 xref: SCTID:369024009 is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! implied link automatically realized ! hindbrain nucleus relationship: part_of UBERON:0002128 intersection_of: UBERON:0002308 ! nucleus of brain intersection_of: part_of UBERON:0002128 ! superior olivary complex [Term] id: UBERON:0007249 name: dorsal accessory inferior olivary nucleus def: "The inferior olivary nucleus that is the smallest, and appears on transverse section as a curved lamina behind the primary olivary nucleus" [Wikipedia:Olivary_body#Olivary_nuclei] synonym: "dorsal accessory olivary nucleus" EXACT [FMA:72593] synonym: "inferior olivary complex, dorsal accessory olive" EXACT [FMA:72593] synonym: "inferior olive, dorsal nucleus" EXACT [FMA:72593] synonym: "nucleus olivaris accessorius posterior" EXACT [FMA:72593, FMA:TA] synonym: "posterior accessory olivary nucleus" EXACT [FMA:72593] xref: FMA:72593 xref: SCTID:369068006 is_a: UBERON:0007244 ! inferior olivary nucleus [Term] id: UBERON:0007250 name: lingual tonsil def: "The lingual tonsils are rounded masses of lymphatic tissue that cover the posterior region of the tongue. They are on the dorsal surface at the base of the tongue. Their lymphatic tissue are dense and nodular, their surface is covered with stratified squamous epithelium which invaginates as a single crypt into each lingual tonsil. They are partially surrounded by connective tissue placing them in the group of Partially-Encapsulated Lymphatic Organs, tonsils, the only one of its kind. They have associated mucous glands which are drained by ducts directly into the single tonsillar crypt." [Wikipedia:Lingual_tonsils] xref: FMA:54836 xref: ncithesaurus:Lingual_Tonsil xref: SCTID:276957006 is_a: UBERON:0002372 ! tonsil [Term] id: UBERON:0007251 name: preoptic nucleus xref: EV:0100226 is_a: UBERON:0006569 ! implied link automatically realized ! diencephalic nucleus relationship: part_of UBERON:0001928 intersection_of: UBERON:0002308 ! nucleus of brain intersection_of: part_of UBERON:0001928 ! preoptic area [Term] id: UBERON:0007252 name: intervertebral disk of cervical vertebra synonym: "cervical intervertebral disc" EXACT [FMA:13895] synonym: "intervertebral disc of cervical region" EXACT [EMAPA:19415] xref: EMAPA:19415 xref: FMA:13895 xref: SCTID:68818006 is_a: UBERON:0001066 ! implied link automatically realized ! intervertebral disk relationship: part_of UBERON:0006072 intersection_of: UBERON:0001066 ! intervertebral disk intersection_of: part_of UBERON:0006072 ! cervical region of vertebral column [Term] id: UBERON:0007254 name: intervertebral disk of thoracic vertebra synonym: "intervertebral disc of thoracic region" EXACT [EMAPA:19489] xref: EMAPA:19489 xref: FMA:10455 is_a: UBERON:0001066 ! implied link automatically realized ! intervertebral disk is_a: UBERON:0005181 ! implied link automatically realized ! thoracic segment organ relationship: part_of UBERON:0006073 intersection_of: UBERON:0001066 ! intervertebral disk intersection_of: part_of UBERON:0006073 ! thoracic region of vertebral column [Term] id: UBERON:0007255 name: intervertebral disk of lumbar vertebra synonym: "intervertebral disc of lumbar region" EXACT [EMAPA:19468] xref: EMAPA:19468 xref: FMA:13894 is_a: UBERON:0001066 ! implied link automatically realized ! intervertebral disk is_a: UBERON:0005173 ! implied link automatically realized ! abdominal segment organ relationship: part_of UBERON:0006074 intersection_of: UBERON:0001066 ! intervertebral disk intersection_of: part_of UBERON:0006074 ! lumbar region of vertebral column [Term] id: UBERON:0007257 name: intervertebral disk of sacral vertebra synonym: "intervertebral disc of sacral region" EXACT [EMAPA:19575] xref: EMAPA:19575 is_a: UBERON:0001066 ! implied link automatically realized ! intervertebral disk is_a: UBERON:0005179 ! implied link automatically realized ! pelvis organ relationship: part_of UBERON:0006075 intersection_of: UBERON:0001066 ! intervertebral disk intersection_of: part_of UBERON:0006075 ! sacral region of vertebral column [Term] id: UBERON:0007260 name: intervertebral disk of third cervical vertebra synonym: "C3 intervertebral disk" EXACT [FMA:13896] synonym: "intervertebral disk, C3-C4" EXACT [FMA:13896] xref: EMAPA:19422 xref: FMA:13896 is_a: UBERON:0007252 ! intervertebral disk of cervical vertebra [Term] id: UBERON:0007261 name: intervertebral disk of fourth cervical vertebra synonym: "intervertebral disc of fourth cervical vertebra" EXACT [FMA:13897] synonym: "intervertebral disk, C4-C5" EXACT [FMA:13897] xref: EMAPA:19425 xref: FMA:13897 xref: SCTID:361748005 is_a: UBERON:0007252 ! intervertebral disk of cervical vertebra [Term] id: UBERON:0007262 name: intervertebral disk of fifth cervical vertebra synonym: "intervertebral disc of fifth cervical vertebra" EXACT [FMA:13898] synonym: "intervertebral disk, C5-C6" EXACT [FMA:13898] xref: EMAPA:19428 xref: FMA:13898 xref: SCTID:361749002 is_a: UBERON:0007252 ! intervertebral disk of cervical vertebra [Term] id: UBERON:0007263 name: intervertebral disk of sixth cervical vertebra synonym: "intervertebral disk, C6-C7" EXACT [FMA:13899] xref: EMAPA:19460 xref: FMA:13899 is_a: UBERON:0007252 ! intervertebral disk of cervical vertebra [Term] id: UBERON:0007264 name: intervertebral disk of seventh cervical vertebra synonym: "intervertebral disk, C7-T1" EXACT [FMA:13900] xref: EMAPA:19463 xref: FMA:13900 is_a: UBERON:0007252 ! intervertebral disk of cervical vertebra [Term] id: UBERON:0007265 name: intervertebral disk of axis synonym: "C2 disk" EXACT [FMA:25058] synonym: "C2 intervertebral disk" EXACT [FMA:25058] synonym: "intervertebral disc of second cervical vertebra" EXACT [FMA:25058] synonym: "intervertebral disk of second cervical vertebra" EXACT [FMA:25058] synonym: "intervertebral disk, C2-C3" EXACT [FMA:25058] synonym: "second cervical intervertebral disk" EXACT [FMA:25058] xref: EMAPA:19419 xref: FMA:25058 is_a: UBERON:0007252 ! intervertebral disk of cervical vertebra [Term] id: UBERON:0007266 name: intervertebral disk of atlas synonym: "C1 disk" EXACT [] synonym: "C1 intervertebral disk" EXACT [] synonym: "first cervical intervertebral disk" EXACT [] synonym: "intervertebral disc of first cervical vertebra" EXACT [] synonym: "intervertebral disk of first cervical vertebra" EXACT [] synonym: "intervertebral disk, C1-C2" EXACT [] xref: EMAPA:19416 xref: FMA:25058 is_a: UBERON:0007252 ! intervertebral disk of cervical vertebra [Term] id: UBERON:0007267 name: trachea pre-cartilage rings synonym: "cartilaginous ring of trachea " EXACT [EMAPA:18699] xref: EHDAA:7082 xref: EHDAA2:0002070 xref: EMAPA:18699 is_a: UBERON:0005866 ! implied link automatically realized ! pre-cartilage condensation is_a: UBERON:0009505 ! implied link automatically realized ! associated mesenchyme of trachea relationship: part_of UBERON:0003126 intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0003126 ! trachea [Term] id: UBERON:0007268 name: upper esophageal sphincter def: "The upper esophageal sphincter (UES) (also called the Pharyngoesophageal sphincter) refers to the superior portion of the esophagus. Unlike the lower esophageal sphincter, it consists of striated muscle and is under conscious control. The primary muscle of the UES is the cricopharyngeus portion of the inferior pharyngeal constrictor. During swallowing the upper esophageal sphincter opens so the bolus can pass into the esophagus. A secondary role of the UES is to reduce backflow from the esophagus into the pharynx." [Wikipedia:Upper_esophageal_sphincter] synonym: "upper oesophageal sphincter" EXACT [Wikipedia:Upper_esophageal_sphincter] xref: ncithesaurus:Upper_Esophageal_Sphincter xref: Wikipedia:Upper_esophageal_sphincter is_a: UBERON:0004590 ! sphincter muscle is_a: UBERON:0007652 ! implied link automatically realized ! esophageal sphincter relationship: part_of UBERON:0001043 ! esophagus [Term] id: UBERON:0007269 name: fore limb/fin musculature synonym: "pectoral fin musculature" NARROW SENSU [ZFA:0000563] xref: EFO:0003540 xref: ZFA:0000563 is_a: UBERON:0007271 ! implied link automatically realized ! limb/fin musculature relationship: part_of UBERON:0004710 intersection_of: UBERON:0001015 ! musculature intersection_of: part_of UBERON:0004710 ! limb/fin of anterior region of body [Term] id: UBERON:0007270 name: hind limb/fin musculature synonym: "pelvic fin musculature" NARROW SENSU [ZFA:0000258] xref: ZFA:0000258 is_a: UBERON:0007271 ! implied link automatically realized ! limb/fin musculature relationship: part_of UBERON:0004709 intersection_of: UBERON:0001015 ! musculature intersection_of: part_of UBERON:0004709 ! limb/fin of posterior region of body [Term] id: UBERON:0007271 name: limb/fin musculature synonym: "fin musculature" NARROW SENSU [ZFA:0000207] xref: ZFA:0000207 is_a: UBERON:0001015 ! implied link automatically realized ! musculature relationship: part_of UBERON:0004708 intersection_of: UBERON:0001015 ! musculature intersection_of: part_of UBERON:0004708 ! limb/fin [Term] id: UBERON:0007272 name: fore limb/fin skeleton synonym: "pectoral fin skeleton" NARROW SENSU [ZFA:0000943] xref: EFO:0003594 xref: ZFA:0000943 is_a: UBERON:0004288 ! implied link automatically realized ! skeleton relationship: part_of UBERON:0004710 intersection_of: UBERON:0004288 ! skeleton intersection_of: part_of UBERON:0004710 ! limb/fin of anterior region of body [Term] id: UBERON:0007273 name: hind limb/fin skeleton synonym: "pelvic fin skeleton" NARROW SENSU [ZFA:0001387] xref: ZFA:0001387 is_a: UBERON:0004288 ! implied link automatically realized ! skeleton relationship: part_of UBERON:0004709 intersection_of: UBERON:0004288 ! skeleton intersection_of: part_of UBERON:0004709 ! limb/fin of posterior region of body [Term] id: UBERON:0007274 name: crista of ampulla of anterior semicircular duct of membranous laybrinth comment: todo - unvetted subset: vertebrate_core synonym: "anterior crista ampullaris" EXACT [ZFA:0000619] synonym: "anterior cristae" EXACT PLURAL [ZFA:0000619] synonym: "anterior semicircular canal sensory patch" EXACT [ZFA:0000619] synonym: "anterior semicircular canal sensory patches" EXACT PLURAL [ZFA:0000619] synonym: "rostral crista" EXACT [ZFA:0000619] xref: FMA:75610 xref: XAO:0004137 xref: ZFA:0000619 is_a: UBERON:0003238 ! implied link automatically realized ! epithelium of superior semicircular canal is_a: UBERON:0006935 ! implied link automatically realized ! crista ampullaris neuroepithelium relationship: part_of UBERON:0001857 intersection_of: UBERON:0006935 ! crista ampullaris neuroepithelium intersection_of: part_of UBERON:0001857 ! anterior semicircular duct [Term] id: UBERON:0007275 name: crista of ampulla of posterior semicircular duct of membranous laybrinth comment: todo - unvetted subset: vertebrate_core synonym: "caudal crista" EXACT [ZFA:0000566] synonym: "posterior crista ampullaris" EXACT [ZFA:0000566] synonym: "posterior cristae" EXACT PLURAL [ZFA:0000566] synonym: "posterior semicircular canal sensory patch" EXACT [ZFA:0000566] synonym: "posterior semicircular canal sensory patches" EXACT PLURAL [ZFA:0000566] xref: FMA:75611 xref: XAO:0004133 xref: ZFA:0000566 is_a: UBERON:0003239 ! implied link automatically realized ! epithelium of posterior semicircular canal is_a: UBERON:0006935 ! implied link automatically realized ! crista ampullaris neuroepithelium relationship: part_of UBERON:0001858 intersection_of: UBERON:0006935 ! crista ampullaris neuroepithelium intersection_of: part_of UBERON:0001858 ! posterior semicircular duct [Term] id: UBERON:0007276 name: crista of ampulla of lateral semicircular duct of membranous laybrinth comment: todo - unvetted subset: vertebrate_core synonym: "lateral crista ampullaris" EXACT [ZFA:0000166] synonym: "lateral cristae" EXACT PLURAL [ZFA:0000166] synonym: "lateral semicircular canal sensory patch" EXACT [ZFA:0000166] synonym: "lateral semicircular canal sensory patches" EXACT PLURAL [ZFA:0000166] xref: FMA:75612 xref: ZFA:0000166 is_a: UBERON:0003240 ! implied link automatically realized ! epithelium of lateral semicircular canal is_a: UBERON:0006935 ! implied link automatically realized ! crista ampullaris neuroepithelium relationship: part_of UBERON:0001859 intersection_of: UBERON:0006935 ! crista ampullaris neuroepithelium intersection_of: part_of UBERON:0001859 ! lateral semicircular duct [Term] id: UBERON:0007277 name: presumptive hindbrain xref: EFO:0003440 xref: ZFA:0000569 is_a: UBERON:0006598 ! implied link automatically realized ! presumptive structure relationship: develops_into UBERON:0002028 intersection_of: UBERON:0006598 ! presumptive structure intersection_of: develops_into UBERON:0002028 ! hindbrain [Term] id: UBERON:0007278 name: presumptive sinus venosus xref: ZFA:0001722 is_a: UBERON:0006598 ! implied link automatically realized ! presumptive structure relationship: develops_into UBERON:0002063 intersection_of: UBERON:0006598 ! presumptive structure intersection_of: develops_into UBERON:0002063 ! sinus venosus [Term] id: UBERON:0007279 name: presumptive atrioventricular canal xref: ZFA:0001723 is_a: UBERON:0006598 ! implied link automatically realized ! presumptive structure relationship: develops_into UBERON:0002087 intersection_of: UBERON:0006598 ! presumptive structure intersection_of: develops_into UBERON:0002087 ! atrioventricular canal [Term] id: UBERON:0007280 name: presumptive endocardium xref: ZFA:0001724 is_a: UBERON:0006598 ! implied link automatically realized ! presumptive structure relationship: develops_into UBERON:0002165 intersection_of: UBERON:0006598 ! presumptive structure intersection_of: develops_into UBERON:0002165 ! endocardium [Term] id: UBERON:0007281 name: presumptive midbrain hindbrain boundary synonym: "presumptive MHB" EXACT [UBERON:cjm] xref: EFO:0003446 xref: XAO:0004086 xref: ZFA:0001187 is_a: UBERON:0009774 ! implied link automatically realized ! embryonic midbrain hindbrain boundary relationship: part_of UBERON:0002346 intersection_of: UBERON:0009774 ! embryonic midbrain hindbrain boundary intersection_of: part_of UBERON:0002346 ! neural ectoderm [Term] id: UBERON:0007282 name: presumptive segmental plate xref: EFO:0003421 xref: ZFA:0000053 is_a: UBERON:0006598 ! implied link automatically realized ! presumptive structure relationship: develops_into UBERON:0003059 intersection_of: UBERON:0006598 ! presumptive structure intersection_of: develops_into UBERON:0003059 ! presomitic mesoderm [Term] id: UBERON:0007283 name: presumptive shield xref: EFO:0003444 xref: ZFA:0001121 is_a: UBERON:0006598 ! implied link automatically realized ! presumptive structure relationship: develops_into UBERON:0003062 intersection_of: UBERON:0006598 ! presumptive structure intersection_of: develops_into UBERON:0003062 ! primitive knot [Term] id: UBERON:0007284 name: presumptive neural plate xref: EFO:0003424 xref: ZFA:0000063 is_a: UBERON:0006598 ! implied link automatically realized ! presumptive structure relationship: develops_into UBERON:0003075 intersection_of: UBERON:0006598 ! presumptive structure intersection_of: develops_into UBERON:0003075 ! neural plate [Term] id: UBERON:0007285 name: presumptive paraxial mesoderm xref: EFO:0003443 xref: XAO:0004134 xref: ZFA:0000591 is_a: UBERON:0006598 ! implied link automatically realized ! presumptive structure relationship: develops_into UBERON:0003077 intersection_of: UBERON:0006598 ! presumptive structure intersection_of: develops_into UBERON:0003077 ! paraxial mesoderm [Term] id: UBERON:0007286 name: presumptive floor plate xref: EFO:0003454 xref: ZFA:0001218 is_a: UBERON:0006598 ! implied link automatically realized ! presumptive structure relationship: develops_into UBERON:0003079 intersection_of: UBERON:0006598 ! presumptive structure intersection_of: develops_into UBERON:0003079 ! floor plate [Term] id: UBERON:0007287 name: presumptive bulbus arteriosus xref: ZFA:0001712 is_a: UBERON:0006598 ! implied link automatically realized ! presumptive structure relationship: develops_into UBERON:0004152 intersection_of: UBERON:0006598 ! presumptive structure intersection_of: develops_into UBERON:0004152 ! bulbus arteriosus [Term] id: UBERON:0007288 name: presumptive forebrain midbrain boundary xref: EFO:0003463 xref: ZFA:0001368 is_a: UBERON:0006598 ! implied link automatically realized ! presumptive structure relationship: develops_into UBERON:0005075 intersection_of: UBERON:0006598 ! presumptive structure intersection_of: develops_into UBERON:0005075 ! forebrain-midbrain boundary [Term] id: UBERON:0007289 name: presumptive rhombomere 1 xref: ZFA:0001207 is_a: UBERON:0006598 ! implied link automatically realized ! presumptive structure relationship: develops_into UBERON:0005499 intersection_of: UBERON:0006598 ! presumptive structure intersection_of: develops_into UBERON:0005499 ! rhombomere 1 [Term] id: UBERON:0007290 name: presumptive rhombomere 3 xref: EFO:0003451 xref: ZFA:0001213 is_a: UBERON:0006598 ! implied link automatically realized ! presumptive structure relationship: develops_into UBERON:0005507 intersection_of: UBERON:0006598 ! presumptive structure intersection_of: develops_into UBERON:0005507 ! rhombomere 3 [Term] id: UBERON:0007291 name: presumptive rhombomere 4 xref: EFO:0003450 xref: ZFA:0001212 is_a: UBERON:0006598 ! implied link automatically realized ! presumptive structure relationship: develops_into UBERON:0005511 intersection_of: UBERON:0006598 ! presumptive structure intersection_of: develops_into UBERON:0005511 ! rhombomere 4 [Term] id: UBERON:0007292 name: presumptive rhombomere 5 xref: EFO:0003449 xref: ZFA:0001211 is_a: UBERON:0006598 ! implied link automatically realized ! presumptive structure relationship: develops_into UBERON:0005515 intersection_of: UBERON:0006598 ! presumptive structure intersection_of: develops_into UBERON:0005515 ! rhombomere 5 [Term] id: UBERON:0007293 name: presumptive rhombomere 6 xref: EFO:0003448 xref: ZFA:0001210 is_a: UBERON:0006598 ! implied link automatically realized ! presumptive structure relationship: develops_into UBERON:0005519 intersection_of: UBERON:0006598 ! presumptive structure intersection_of: develops_into UBERON:0005519 ! rhombomere 6 [Term] id: UBERON:0007294 name: presumptive rhombomere 7 xref: EFO:0003447 xref: ZFA:0001209 is_a: UBERON:0006598 ! implied link automatically realized ! presumptive structure relationship: develops_into UBERON:0005523 intersection_of: UBERON:0006598 ! presumptive structure intersection_of: develops_into UBERON:0005523 ! rhombomere 7 [Term] id: UBERON:0007295 name: presumptive rhombomere 8 xref: EFO:0003452 xref: ZFA:0001214 is_a: UBERON:0006598 ! implied link automatically realized ! presumptive structure relationship: develops_into UBERON:0005527 intersection_of: UBERON:0006598 ! presumptive structure intersection_of: develops_into UBERON:0005527 ! rhombomere 8 [Term] id: UBERON:0007296 name: presumptive rhombomere 2 xref: ZFA:0001208 is_a: UBERON:0006598 ! implied link automatically realized ! presumptive structure relationship: develops_into UBERON:0005569 intersection_of: UBERON:0006598 ! presumptive structure intersection_of: develops_into UBERON:0005569 ! rhombomere 2 [Term] id: UBERON:0007297 name: presumptive pronephric mesoderm synonym: "nephron primordium" EXACT [ZFA:0001070] xref: EFO:0003619 xref: ZFA:0001070 is_a: UBERON:0006598 ! implied link automatically realized ! presumptive structure relationship: develops_into UBERON:0005721 intersection_of: UBERON:0006598 ! presumptive structure intersection_of: develops_into UBERON:0005721 ! pronephric mesoderm [Term] id: UBERON:0007298 name: pronephric proximal convoluted tubule xref: ZFA:0001620 is_a: UBERON:0001287 ! implied link automatically realized ! proximal convoluted tubule is_a: UBERON:0006173 ! implied link automatically realized ! pronephric proximal tubule relationship: part_of UBERON:0002120 intersection_of: UBERON:0001287 ! proximal convoluted tubule intersection_of: part_of UBERON:0002120 ! pronephros [Term] id: UBERON:0007299 name: choroid plexus of tectal ventricle synonym: "choroid plexus tectal ventricle" EXACT [ZFA:0001445] xref: ZFA:0001445 is_a: UBERON:0001886 ! implied link automatically realized ! choroid plexus is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain relationship: part_of UBERON:0002289 intersection_of: UBERON:0001886 ! choroid plexus intersection_of: part_of UBERON:0002289 ! cerebral aqueduct [Term] id: UBERON:0007300 name: fore limb/fin blood vessel synonym: "pectoral fin blood vessel" NARROW SENSU [ZFA:0005301] xref: ZFA:0005301 is_a: UBERON:0007301 ! implied link automatically realized ! limb/fin blood vessel relationship: part_of UBERON:0004710 intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0004710 ! limb/fin of anterior region of body [Term] id: UBERON:0007301 name: limb/fin blood vessel synonym: "fin blood vessel" NARROW SENSU [ZFA:0005299] xref: ZFA:0005299 is_a: UBERON:0001981 ! implied link automatically realized ! blood vessel relationship: part_of UBERON:0004708 intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0004708 ! limb/fin [Term] id: UBERON:0007302 name: fore limb/fin vasculature synonym: "pectoral fin vasculature" NARROW SENSU [ZFA:0005096] xref: ZFA:0005096 is_a: UBERON:0007304 ! implied link automatically realized ! limb/fin vasculature relationship: part_of UBERON:0004710 intersection_of: UBERON:0002049 ! vasculature intersection_of: part_of UBERON:0004710 ! limb/fin of anterior region of body [Term] id: UBERON:0007303 name: pharyngeal vasculature synonym: "branchial vasculature" EXACT [ZFA:0005003] xref: ZFA:0005003 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002049 ! implied link automatically realized ! vasculature relationship: part_of UBERON:0001042 intersection_of: UBERON:0002049 ! vasculature intersection_of: part_of UBERON:0001042 ! chordate pharynx [Term] id: UBERON:0007304 name: limb/fin vasculature synonym: "fin vasculature" NARROW SENSU [ZFA:0005095] xref: ZFA:0005095 is_a: UBERON:0002049 ! implied link automatically realized ! vasculature relationship: part_of UBERON:0004708 intersection_of: UBERON:0002049 ! vasculature intersection_of: part_of UBERON:0004708 ! limb/fin [Term] id: UBERON:0007306 name: pronephric glomerular capillary xref: ZFA:0005309 is_a: UBERON:0004212 ! implied link automatically realized ! glomerular capillary relationship: part_of UBERON:0002120 intersection_of: UBERON:0004212 ! glomerular capillary intersection_of: part_of UBERON:0002120 ! pronephros [Term] id: UBERON:0007307 name: pronephric glomerular basement membrane xref: ZFA:0005313 is_a: UBERON:0005777 ! implied link automatically realized ! glomerular basement membrane relationship: part_of UBERON:0002120 intersection_of: UBERON:0005777 ! glomerular basement membrane intersection_of: part_of UBERON:0002120 ! pronephros [Term] id: UBERON:0007308 name: pronephric distal early tubule xref: ZFA:0001622 is_a: UBERON:0006337 ! implied link automatically realized ! distal early tubule relationship: part_of UBERON:0002120 intersection_of: UBERON:0006337 ! distal early tubule intersection_of: part_of UBERON:0002120 ! pronephros [Term] id: UBERON:0007311 name: sputum def: "Matter ejected from the lungs, bronchi, and trachea, through the mouth." [Dorlands_Medical_Dictionary:MerckSource] synonym: "expectoration" RELATED [BTO:0001297] xref: BTO:0001297 xref: GAID:1171 xref: MA:0002536 xref: MESH:A.12.200.808 xref: ncithesaurus:Sputum is_a: UBERON:0006538 ! respiratory system fluid/secretion relationship: part_of UBERON:0006524 ! alveolar system [Term] id: UBERON:0007312 name: pudendal artery xref: MA:0002028 xref: SCTID:277968003 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0007314 name: superior external pudendal artery xref: MA:0002029 is_a: UBERON:0007312 ! pudendal artery [Term] id: UBERON:0007315 name: internal pudendal artery def: "The internal pudendal artery is an artery that branches off the internal iliac artery, providing blood to the external genitalia. The internal pudendal artery is the terminal branch of the anterior trunk of the internal iliac artery. It is smaller in the female than in the male." [Wikipedia:Internal_pudendal_artery] synonym: "internal pudendal vessels" RELATED [Wikipedia:Internal_pudendal_artery] synonym: "internal pudic artery" RELATED [Wikipedia:Internal_pudendal_artery] xref: FMA:18835 xref: SCTID:244309002 is_a: UBERON:0007312 ! pudendal artery [Term] id: UBERON:0007316 name: deep external pudendal artery def: "The deep external pudendal artery (deep external pudic artery), more deeply seated than the superficial external pudendal artery, passes medialward across the Pectineus and the Adductor longus muscles; it is covered by the fascia lata, which it pierces at the medial side of the thigh, and is distributed, in the male, to the integument of the scrotum and perineum, in the female to the labium majus; its branches anastomose with the scrotal (or labial) branches of the perineal artery." [Wikipedia:Deep_external_pudendal_artery] xref: FMA:20739 xref: SCTID:31708008 is_a: UBERON:0007312 ! pudendal artery [Term] id: UBERON:0007317 name: superficial external pudendal artery def: "The superficial external pudendal artery (superficial external pudic artery) arises from the medial side of the femoral artery, close to the superficial epigastric artery and superficial iliac circumflex artery." [Wikipedia:Superficial_external_pudendal_artery] xref: FMA:20738 xref: SCTID:47954000 is_a: UBERON:0007312 ! pudendal artery relationship: branch_of UBERON:0002060 ! femoral artery relationship: part_of UBERON:0001308 ! external iliac artery relationship: part_of UBERON:0002060 ! femoral artery [Term] id: UBERON:0007318 name: saphenous vein def: "Either of two main superficial veins of the leg, one larger than the other, that begin at the foot." [BTO:0001808] xref: BTO:0001808 xref: MA:0002215 xref: MESH:A.07.231.908.819 xref: ncithesaurus:Saphenous_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0007319 name: medial saphenous vein comment: todo - check synonym: "medial accessory saphenous vein" EXACT [FMA:44322] xref: FMA:44322 xref: MA:0002173 is_a: UBERON:0007318 ! saphenous vein relationship: tributary_of UBERON:0001361 {source="FMA/obol"} ! femoral vein relationship: tributary_of UBERON:0001363 {source="FMA/obol"} ! great saphenous vein [Term] id: UBERON:0007321 name: lateral saphenous vein comment: todo - check synonym: "lateral accessory saphenous vein" EXACT [FMA:44321] xref: FMA:44321 xref: MA:0002161 is_a: UBERON:0007318 ! saphenous vein relationship: tributary_of UBERON:0001361 {source="FMA/obol"} ! femoral vein relationship: tributary_of UBERON:0001363 {source="FMA/obol"} ! great saphenous vein [Term] id: UBERON:0007324 name: pancreatic lobe comment: todo - check synonym: "lobulus pancreaticus" EXACT [FMA:16012] synonym: "pancreatic lobule" EXACT [FMA:16012] xref: FMA:16012 xref: MA:0000721 is_a: UBERON:0000064 ! organ part is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0000017 ! exocrine pancreas [Term] id: UBERON:0007329 name: pancreatic duct def: "A duct that is part of the pancreas and connected to the duodenum." [UBERON:cjm, Wikipedia:Pancreatic_duct] comment: note that this class groups together accessory (dorsal) and main (ventral) pancreatic ducts. subset: vertebrate_core synonym: "duct of pancreas" EXACT [OBOL:automatic] synonym: "pancreas duct" EXACT [OBOL:automatic] xref: EHDAA:9194 xref: FMA:10419 xref: MA:0000124 xref: SCTID:181278006 xref: TAO:0001372 xref: ZFA:0001372 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003928 {source="ZFA"} ! digestive system duct relationship: continuous_with UBERON:0002114 ! duodenum relationship: develops_from UBERON:0003922 ! pancreatic bud relationship: part_of UBERON:0001264 ! pancreas [Term] id: UBERON:0007330 name: rhamphotheca def: "The horny sheath, or rhamphotheca, is produced by the outer layers of the Malpighian cells, and resembles in structure other horny parts, as claws, nails, and spurs. The horny sheath of the bill sometimes consists of a number of pieces more or less separate. In the Ostriches and Tinamous there is a lateral pair and an unpaired piece for each jaw; in the Tubinares on the upper jaw at least one pair of lateral or maxillary pieces, an unpaired piece which covers the culmen and is continued into the prolonged nasal tubes, and an apical hook, strongly curved and pointed: each half of the under jaw is covered by one ventral, one dorsal, and one terminal piece, the latter partly fusing with that of the other side into a strong scoop." [http://www.thewonderofbirds.com/biology/bill-beak/] synonym: "horny sheath" RELATED [] is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0005094 ! beak [Term] id: UBERON:0007331 name: maxillary rhamphotheca synonym: "gnathotheca" RELATED [] synonym: "maxillary beak" RELATED [] is_a: UBERON:0007330 ! rhamphotheca relationship: part_of UBERON:0005094 ! beak [Term] id: UBERON:0007332 name: mandibular rhamphotheca synonym: "gnathotheca" RELATED [] synonym: "mandibular beak" RELATED [] is_a: UBERON:0007330 ! rhamphotheca relationship: part_of UBERON:0005094 ! beak [Term] id: UBERON:0007333 name: avian pallium def: "In the anatomy of animals, an avian pallium is the dorsal telencephalon of a bird's brain. Pallium of avian species tend to be relatively large, comprising ~75% of the telencephalic volume." [Wikipedia:Avian_pallium] xref: BTO:0003399 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001893 ! telencephalon [Term] id: UBERON:0007334 name: nidopallium def: "The nidopallium, meaning nested pallium, is the region of the avian brain that is used mostly for some types of executive functions but also other higher cognitive tasks. The region was renamed to nidopallium in 2002 during the Avian Brain Nomenclature Consortium because the prior name suggested that the region was used for more primitive functions." [http://en.wikipedia.org/wiki/Avian_Brain_Nomenclature_Consortium, Wikipedia:Nidopallium] synonym: "nested pallium" RELATED [BTO:0003389] xref: BTO:0003389 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0007333 ! avian pallium [Term] id: UBERON:0007347 name: hyperpallium def: "Birds have a unique pallial structure known as the hyperpallium, once called the hyperstriatum." [Wikipedia:Hyperpallium] synonym: "hyperstriatum" RELATED [BTO:0003400] xref: BTO:0003400 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0007333 ! avian pallium [Term] id: UBERON:0007349 name: mesopallium synonym: "middle pallium" RELATED [BTO:0003405] xref: BTO:0003405 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0007333 ! avian pallium [Term] id: UBERON:0007350 name: arcopallium def: "The arcopallium refers to regions of the avian brain which partially overlap regions homologous to the amygdala of mammals. These regions have formerly been referred to as archistriatum, and before this epistriatum or amygdaloid complex[1], and a recent change of nomenclature has divided the region into the arcopallium and posterior pallial amygdala.[2] The new nomenclature, adopted in 2004, reflects a modern understanding that the avian brain is broadly similar to the mammalian brain, containing large regions homologous to the mammalian neocortex, claustrum, and pallial amygdala. The outdated nomenclature it replaced perceived the avian brain as consisting almost entirely of enlarged basal ganglia, to which more complex outer layers had been added during a progress toward mammalian intelligence." [Wikipedia:Arcopallium] synonym: "arched pallium" RELATED [BTO:0003408] synonym: "archistriatum" RELATED [BM:ARCO, http://www.avianbrain.org/archistriatum.html] xref: BM:ARCO xref: BTO:0003408 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0007333 ! avian pallium [Term] id: UBERON:0007351 name: nucleus isthmo-opticus synonym: "nucleus isthmoopticus" RELATED [BTO:0003411] xref: BTO:0003411 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0007333 ! avian pallium [Term] id: UBERON:0007352 name: stria vascularis vasculature def: "blood vessels supplying the stria vascularis in the cochlea of the inner ear." [MP:0004368] is_a: UBERON:0002200 ! implied link automatically realized ! vasculature of head is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0004522 ! implied link automatically realized ! vasculature of musculoskeletal system is_a: UBERON:0006876 ! implied link automatically realized ! vasculature of organ relationship: part_of UBERON:0002282 intersection_of: UBERON:0002049 ! vasculature intersection_of: part_of UBERON:0002282 ! stria vascularis of cochlear duct [Term] id: UBERON:0007354 name: cartilage of pharyngotympanic tube def: "The cartilage of pharyngotympanic tube, about 24 mm. in length, is formed of a triangular plate of elastic fibrocartilage, the apex of which is attached to the margin of the medial end of the osseous portion of the tube, while its base lies directly under the mucous membrane of the nasal part of the pharynx, where it forms an elevation, the torus tubarius or cushion, behind the pharyngeal orifice of the tube. The upper edge of the cartilage is curled upon itself, being bent laterally so as to present on transverse section the appearance of a hook; a groove or furrow is thus produced, which is open below and laterally, and this part of the canal is completed by fibrous membrane. The cartilage lies in a groove between the petrous part of the temporal and the great wing of the sphenoid; this groove ends opposite the middle of the medial pterygoid plate. The cartilaginous and bony portions of the tube are not in the same plane, the former inclining downward a little more than the latter. The diameter of the tube is not uniform throughout, being greatest at the pharyngeal orifice, least at the junction of the bony and cartilaginous portions, and again increased toward the tympanic cavity; the narrowest part of the tube is termed the isthmus. The position and relations of the pharyngeal orifice are described with the nasal part of the pharynx. The mucous membrane of the tube is continuous in front with that of the nasal part of the pharynx, and behind with that of the tympanic cavity; it is covered with ciliated epithelium and is thin in the osseous portion, while in the cartilaginous portion it contains many mucous glands and near the pharyngeal orifice a considerable amount of adenoid tissue, which has been named by Gerlach the tube tonsil. The tube is opened during deglutition by the Salpingopharyngeus and Dilatator tubC&. The latter arises from the hook of the cartilage and from the membranous part of the tube, and blends below with the Tensor veli palatini." [Wikipedia:Cartilage_of_pharyngotympanic_tube] synonym: "cartilage of auditory tube" EXACT [FMA:60096] synonym: "cartilage of eustachian tube" EXACT [FMA:60096] synonym: "cartilago tubae auditivae" EXACT [FMA:60096, FMA:TA] synonym: "cartilago tubae auditoriae" EXACT [FMA:60096, FMA:TA] synonym: "pharyngotympanic tube cartilage" EXACT [FMA:60096] xref: FMA:60096 is_a: UBERON:0002418 ! implied link automatically realized ! cartilage tissue is_a: UBERON:0003566 ! implied link automatically realized ! head connective tissue relationship: part_of UBERON:0002393 intersection_of: UBERON:0002418 ! cartilage tissue intersection_of: part_of UBERON:0002393 ! pharyngotympanic tube [Term] id: UBERON:0007355 name: bony part of pharyngotympanic tube def: "The bony part of pharyngotympanic tube is about 12 mm. in length. It begins in the carotid wall of the tympanic cavity, below the septum canalis musculotubarii, and, gradually narrowing, ends at the angle of junction of the squama and the petrous portion of the temporal bone, its extremity presenting a jagged margin which serves for the attachment of the cartilaginous portion." [Wikipedia:Bony_part_of_pharyngotympanic_tube] synonym: "bony part of auditory tube" EXACT [FMA:60057] synonym: "bony part of eustachian tube" EXACT [FMA:60057] synonym: "osseous portion" RELATED [Wikipedia:Bony_part_of_pharyngotympanic_tube] synonym: "osseous portion of eustachian tube" EXACT [FMA:60057] synonym: "pars ossea (tuba auditiva)" EXACT [FMA:60057] synonym: "pars ossea (tuba auditoria)" EXACT [FMA:60057] xref: FMA:60057 is_a: UBERON:0002481 ! implied link automatically realized ! bone tissue is_a: UBERON:0003566 ! implied link automatically realized ! head connective tissue relationship: part_of UBERON:0002393 intersection_of: UBERON:0002481 ! bone tissue intersection_of: part_of UBERON:0002393 ! pharyngotympanic tube [Term] id: UBERON:0007356 name: crop def: "A pouched enlargement of the gullet of many birds that serves as a receptacle for food and for its preliminary maceration." [BTO:0000301, Wikipedia:Crop_(anatomy)#Birds] comment: TODO - BTO says part of pharynx, WP says part_of esophagus xref: BTO:0000301 xref: SCTID:68028003 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004921 ! subdivision of digestive tract relationship: part_of UBERON:0001042 ! chordate pharynx [Term] id: UBERON:0007357 name: proventriculus def: "The glandular or true stomach of a bird that is situated between the crop and gizzard." [BTO:0001136, Wikipedia:Proventriculus] subset: organ_slim xref: BTO:0001136 xref: GAID:1239 xref: MESH:A.13.853.710 xref: SCTID:63897003 is_a: UBERON:0000062 ! organ relationship: continuous_with UBERON:0005052 ! gizzard relationship: continuous_with UBERON:0007356 ! crop relationship: part_of UBERON:0005409 ! gastrointestinal system [Term] id: UBERON:0007358 name: abomasum def: "The fourth stomach of ruminating animals. It is also called the \"true\" stomach. It is an elongated pear-shaped sac lying on the floor of the abdomen, on the right-hand side, and roughly between the seventh and twelfth ribs. It leads to the beginning of the small intestine. (From Black's Veterinary Dictionary, 17th ed)" [MESH:A.13.869.106, Wikipedia:Abomasum] subset: organ_slim synonym: "fourth stomach" RELATED [BTO:0000024] synonym: "maw" RELATED [Wikipedia:Abomasum] synonym: "read" RELATED [Wikipedia:Abomasum] synonym: "rennet-bag" RELATED [Wikipedia:Abomasum] xref: BTO:0000024 xref: GAID:1241 xref: http://upload.wikimedia.org/wikipedia/commons/2/2b/Abomasum_%28PSF%29.png xref: MESH:A.13.869.106 xref: SCTID:410028001 is_a: UBERON:0007366 ! ruminant stomach [Term] id: UBERON:0007359 name: ruminant forestomach def: "Any of the first three stomachs of a ruminant, i.e., the rumen, reticulum, or omasum." [BTO:0000480] subset: organ_slim synonym: "forestomach" BROAD SENSU [BTO:0000480] xref: BTO:0000480 xref: http://upload.wikimedia.org/wikipedia/commons/2/2b/Abomasum_%28PSF%29.png is_a: UBERON:0007366 ! ruminant stomach [Term] id: UBERON:0007361 name: ruminant reticulum def: "The second stomach of ruminants. It lies almost in the midline in the front of the abdomen, in contact with the liver and diaphragm and communicates freely with the RUMEN via the ruminoreticular orifice. The lining of the reticulum is raised into folds forming a honeycomb pattern over the surface. (From Concise Veterinary Dictionary, 1988)" [MESH:A.13.869.697, Wikipedia:Reticulum_(anatomy)] synonym: "reticulum" BROAD SENSU [BTO:0000347] xref: BTO:0000347 xref: http://upload.wikimedia.org/wikipedia/commons/2/2b/Abomasum_%28PSF%29.png xref: MESH:A.13.869.697 xref: SCTID:23703003 is_a: UBERON:0007359 ! ruminant forestomach relationship: part_of UBERON:0007364 ! reticulorumen [Term] id: UBERON:0007362 name: omasum def: "The third stomach of ruminants, situated on the right side of the abdomen at a higher level than the fourth stomach and between this latter and the second stomach, with both of which it communicates. From its inner surface project large numbers of leaves or folia, each of which possesses roughened surfaces. In the center of each folium is a band of muscle fibers which produces a rasping movement of the leaf when it contracts. One leaf rubs against those on either side of it, and large particles of food material are ground down between the rough surfaces, preparatory to further digestion in the succeeeding parts of the alimentary canal. (Black's Veterinary Dictionary, 17th ed)" [MESH:A.13.869.524, Wikipedia:Omasum] synonym: "omasum" RELATED [MESH:A.13.869.524] xref: BTO:0000348 xref: GAID:1242 xref: http://upload.wikimedia.org/wikipedia/commons/2/2b/Abomasum_%28PSF%29.png xref: MESH:A.13.869.524 xref: SCTID:410028001 is_a: UBERON:0007359 ! ruminant forestomach [Term] id: UBERON:0007364 name: reticulorumen def: "first chamber in the alimentary canal of ruminant animals. It is composed of the rumen and reticulum. The reticulum differs from the rumen with regard to the texture of its lining. The rumen wall is covered in small finger like projections called papillae, which are flattened, approximately 0.5 cm in length and 0.3 cm wide in cattle. The reticulum is lined with ridges that form a hexagonal honeycomb pattern. The ridges are approximately 0.1 - 0.2 mm wide and are raised 0.5 cm above the reticulum wall. The hexagons in the reticulum are approximately 2-5 cm wide in cattle. Despite the differences in the texture of the lining of the two parts of the reticulorumen, it represents one functional space. Microbial fermentation degrades ingested carbohydrates in the reticulorumen to the volatile fatty acids acetate, propionate and butyrate, and proteins to short peptides, amino acids and ammonia. This fermentation is anaerobic and allows the microbes in the reticulorumen to derive the energy and amino nitrogen in order that they can reproduce. Ruminants absorb the volatile fatty acids across the reticulorumen wall and use them for energy, while the microbes eventually flow out of the rumen into the remainder of the alimentary canal, where they are eventually digested and absorbed. The reticulum, at approximately 5-20 litres, is considerably smaller in capacity than the rumen, which is approximately 100-200 litres in cattle. The oesophageal groove, which links the oesophagus and the omasum is located in the reticulum[WP]." [Wikipedia:Reticulorumen] xref: BTO:0001168 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004921 ! subdivision of digestive tract relationship: part_of UBERON:0007366 ! ruminant stomach [Term] id: UBERON:0007365 name: rumen def: "The first stomach of ruminants. It lies on the left side of the body, occupying the whole of the left side of the abdomen and even stretching across the median plane of the body to the right side. It is capacious, divided into an upper and a lower sac, each of which has a blind sac at its posterior extremity. The rumen is lined by mucous membrane containing no digestive glands, but mucus-secreting glands are present in large numbers. Coarse, partially chewed food is stored and churned in the rumen until the animal finds circumstances convenient for rumination. When this occurs, little balls of food are regurgitated through the esophagus into the mouth, and are subjected to a second more thorough mastication, swallowed, and passed on into other parts of the compound stomach. (From Black's Veterinary Dictionary, 17th ed)." [MESH:A.13.869.804, Wikipedia:Rumen] synonym: "paunch" RELATED [BTO:0001194] xref: BTO:0001194 xref: GAID:1244 xref: http://upload.wikimedia.org/wikipedia/commons/2/2b/Abomasum_%28PSF%29.png xref: MESH:A.13.869.804 xref: SCTID:45138000 is_a: UBERON:0007359 ! ruminant forestomach relationship: part_of UBERON:0007364 ! reticulorumen [Term] id: UBERON:0007366 name: ruminant stomach xref: GAID:1240 xref: http://upload.wikimedia.org/wikipedia/commons/2/2b/Abomasum_%28PSF%29.png xref: MESH:A.13.869 is_a: UBERON:0000945 ! stomach [Term] id: UBERON:0007367 name: surface of tongue synonym: "tongue surface" EXACT [FMA:54647] xref: FMA:54647 is_a: UBERON:0006984 ! implied link automatically realized ! anatomical surface relationship: part_of UBERON:0001723 intersection_of: UBERON:0006984 ! anatomical surface intersection_of: part_of UBERON:0001723 ! tongue [Term] id: UBERON:0007371 name: superior surface of tongue synonym: "dorsal surface of tongue" EXACT [FMA:54646] xref: FMA:54646 is_a: UBERON:0007367 ! surface of tongue [Term] id: UBERON:0007373 name: inferior surface of tongue synonym: "ventral surface of tongue" EXACT [FMA:54648] xref: FMA:54648 xref: SCTID:362100003 is_a: UBERON:0007367 ! surface of tongue [Term] id: UBERON:0007374 name: incus cartilage condensation xref: EMAPA:18228 is_a: UBERON:0005863 ! cartilaginous condensation is_a: UBERON:0009506 ! implied link automatically realized ! associated mesenchyme of middle ear relationship: part_of UBERON:0001686 ! auditory ossicle [Term] id: UBERON:0007375 name: palate subset: grouping_class xref: AAO:0010535 xref: SCTID:181227004 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0000033 ! head [Term] id: UBERON:0007376 name: outer epithelial layer def: "The epidermis is the entire outer epithelial layer of an animal, it may be a single layer that produces an extracellular material (e.g. the cuticle of arthropods) or a complex stratified squamous epithelium, as in the case of many vertebrate species[GO]. The epidermis of a more complex invertebrate is just one-layer deep, and may be protected by a non-cellular cuticle. The epidermis of a higher vertebrate has many layers, and the outer layers are reinforced with keratin and then die[WP]." [Wikipedia:Epidermis_(zoology)] subset: grouping_class synonym: "epidermis" NARROW [GO:0008544] synonym: "hypodermis" RELATED INCONSISTENT [GO:0008544, WBbt:0005733] synonym: "outer epidermal layer" EXACT [] xref: FBbt:00004993 xref: HAO:0000298 xref: TADS:0000109 xref: WBbt:0005733 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium is_a: UBERON:0003102 ! surface structure relationship: surrounds UBERON:0000468 intersection_of: UBERON:0000483 ! epithelium intersection_of: surrounds UBERON:0000468 ! multi-cellular organism [Term] id: UBERON:0007377 name: stratum compactum def: "Portion of the dermis characterized by a well-arranged, plywood-like, collagenous network." [ISBN10:0073040584 "Vertebrates, Kardong", ZFIN:ZDB-PUB-040726-12] comment: connective tissue in the skin is usually diffuse and irregular, although in some species collagen bundles are arranged in a distinct ordered layer in the dermis synonym: "dermal deep region" EXACT [ZFA:0001182] xref: AAO:0010600 xref: TAO:0001182 xref: ZFA:0001182 is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004923 ! organ component layer relationship: part_of UBERON:0002067 ! dermis [Term] id: UBERON:0007378 name: egg yolk def: "The yellow spheroidal mass of stored food that forms the inner portion of the egg of a bird or reptile and is surrounded by the white." [BTO:0000371, Wikipedia:Yolk] synonym: "yolk" RELATED [BTO:0000371] xref: AAO:0010579 xref: BTO:0000371 xref: MESH:A.16.631.325 xref: ncithesaurus:Egg_Yolk is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0007379 ! egg [Term] id: UBERON:0007379 name: egg def: "The hard-shelled reproductive body produced by a bird and especially by the common domestic chicken; also: its contents used as food." [BTO:0000369, Wikipedia:Egg_(biology)] xref: BTO:0000369 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: develops_from UBERON:0000474 ! female reproductive system [Term] id: UBERON:0007380 name: dermal scale def: "Dermal bone that is thin, flexible, and platelike, and that develops in overlapping skinfolds that cover the body and often the head of fish and the bases of the fins." [TAO:curator, Wikipedia:Scale_(zoology)#Fish_scales] synonym: "fish scale" RELATED [Wikipedia:Scale_(zoology)#Fish_scales] synonym: "scales" EXACT PLURAL [ZFA:0000277] xref: AAO:0010056 xref: TAO:0000277 xref: VAO:0000048 xref: ZFA:0000277 is_a: UBERON:0002542 ! scale is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0002067 ! dermis [Term] id: UBERON:0007381 name: epidermal scale def: "." [Wikipedia:Reptile_scales] is_a: UBERON:0002542 ! scale is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001003 ! epidermis [Term] id: UBERON:0007383 name: enveloping layer of ectoderm def: "Outermost monolayer of cells surrounding the embryo that become very flattened in the blastula and give rise to the periderm. Originallu this tissue is one cell layer thick but in most vertebrates it soon becomes a two layered structure. The outer layer gives rise to the periderm." [ISBN:9780878932504 "Developmental Biology", ZFIN:ZDB-PUB-961014-576] synonym: "enveloping layer" EXACT [ZFIN:ZDB-PUB-961014-576] synonym: "EVL" EXACT [ZFA:0000086] xref: EFO:0003425 xref: TAO:0000086 xref: ZFA:0000086 is_a: UBERON:0005423 ! developing anatomical structure relationship: develops_from UBERON:0000924 ! ectoderm relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0007384 name: limb/fin lymph vessel xref: ZFA:0005300 is_a: UBERON:0001473 ! implied link automatically realized ! lymphatic vessel relationship: part_of UBERON:0004708 intersection_of: UBERON:0001473 ! lymphatic vessel intersection_of: part_of UBERON:0004708 ! limb/fin relationship: part_of UBERON:0007304 ! limb/fin vasculature [Term] id: UBERON:0007385 name: fore limb/fin lymph vessel xref: TAO:0005302 xref: ZFA:0005302 is_a: UBERON:0007384 ! implied link automatically realized ! limb/fin lymph vessel relationship: part_of UBERON:0004710 intersection_of: UBERON:0001473 ! lymphatic vessel intersection_of: part_of UBERON:0004710 ! limb/fin of anterior region of body relationship: part_of UBERON:0007302 ! fore limb/fin vasculature [Term] id: UBERON:0007386 name: hind limb/fin lymph vessel is_a: UBERON:0007384 ! implied link automatically realized ! limb/fin lymph vessel relationship: part_of UBERON:0004709 intersection_of: UBERON:0001473 ! lymphatic vessel intersection_of: part_of UBERON:0004709 ! limb/fin of posterior region of body [Term] id: UBERON:0007389 name: limb/fin fin cartilage xref: TAO:0001543 xref: ZFA:0001543 is_a: UBERON:0002418 ! implied link automatically realized ! cartilage tissue relationship: part_of UBERON:0004708 intersection_of: UBERON:0002418 ! cartilage tissue intersection_of: part_of UBERON:0004708 ! limb/fin relationship: part_of UBERON:0002091 ! appendicular skeleton [Term] id: UBERON:0007390 name: fore limb/fin cartilage xref: TAO:0000257 xref: ZFA:0000257 is_a: UBERON:0007389 ! implied link automatically realized ! limb/fin fin cartilage relationship: part_of UBERON:0004710 intersection_of: UBERON:0002418 ! cartilage tissue intersection_of: part_of UBERON:0004710 ! limb/fin of anterior region of body relationship: part_of UBERON:0007272 ! fore limb/fin skeleton [Term] id: UBERON:0007391 name: hind limb/fin cartilage xref: TAO:0001459 xref: ZFA:0001459 is_a: UBERON:0007389 ! implied link automatically realized ! limb/fin fin cartilage relationship: part_of UBERON:0004709 intersection_of: UBERON:0002418 ! cartilage tissue intersection_of: part_of UBERON:0004709 ! limb/fin of posterior region of body relationship: part_of UBERON:0007273 ! hind limb/fin skeleton [Term] id: UBERON:0007412 name: midbrain raphe nuclei def: "Midline nuclei found in the midbrain, includes the dorsal raphe nucleus and the rostral linear nucleus of raphe." [NIF_GrossAnatomy:birnlex_1676] comment: todo - check. note BTO class is placed here as it is placed in hindbrain synonym: "midbrain raphe" EXACT [NIF_GrossAnatomy:birnlex_1676] synonym: "midbrain raphe nuclei" EXACT [NIF_GrossAnatomy:birnlex_1676] synonym: "nuclei raphes tegmenti mesencephali" EXACT [FMA:77787, FMA:TA] synonym: "raphe nuclei of tegmentum of midbrain" EXACT [FMA:77787] synonym: "raphe nucleus" BROAD [BTO:0003387] synonym: "set of raphe nuclei of tegmentum of midbrain" EXACT [FMA:77787] xref: ABA:RAmb xref: BTO:0003387 xref: FMA:77787 xref: NIF_GrossAnatomy:birnlex_1676 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0004684 {source="Wikipedia"} ! raphe nuclei relationship: spatially_disjoint_from UBERON:0001965 {source="ABA"} ! substantia nigra pars compacta relationship: spatially_disjoint_from UBERON:0002142 {source="ABA"} ! pedunculopontine tegmental nucleus [Term] id: UBERON:0007413 name: nucleus of pontine reticular formation synonym: "pontine reticular formation nucleus" EXACT [FMA:72245] xref: ABA:PRNr xref: FMA:72245 is_a: UBERON:0006331 ! implied link automatically realized ! brainstem nucleus is_a: UBERON:0009662 ! implied link automatically realized ! hindbrain nucleus relationship: part_of UBERON:0002573 intersection_of: UBERON:0002308 ! nucleus of brain intersection_of: part_of UBERON:0002573 ! pontine reticular formation [Term] id: UBERON:0007414 name: nucleus of midbrain tegmentum xref: FMA:258768 is_a: UBERON:0009661 ! implied link automatically realized ! midbrain nucleus relationship: part_of UBERON:0001943 intersection_of: UBERON:0002308 ! nucleus of brain intersection_of: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0007415 name: nucleus of midbrain reticular formation synonym: "midbrain reticular formation nucleus" EXACT [FMA:62443] synonym: "midbrain reticular nucleus" EXACT [ABA:MRN] xref: ABA:MRN xref: FMA:62443 is_a: UBERON:0007414 ! implied link automatically realized ! nucleus of midbrain tegmentum relationship: part_of UBERON:0002639 intersection_of: UBERON:0007414 ! nucleus of midbrain tegmentum intersection_of: part_of UBERON:0002639 ! midbrain reticular formation [Term] id: UBERON:0007416 name: cerebellar peduncle xref: FMA:272298 xref: MA:0002742 xref: SCTID:362417003 is_a: UBERON:0007417 {source="FMA"} ! peduncle of neuraxis relationship: part_of UBERON:0002474 ! cerebellar peduncular complex [Term] id: UBERON:0007417 name: peduncle of neuraxis synonym: "neuraxis peduncle" EXACT [FMA:83860] xref: FMA:83860 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0007418 name: decussation of neuraxis synonym: "neuraxis decussation" EXACT [FMA:83858] xref: FMA:83858 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0007425 name: decussation of diencephalon synonym: "diencephalon decussation" EXACT [FMA:62446] xref: FMA:62446 is_a: UBERON:0003931 ! implied link automatically realized ! diencephalic white matter is_a: UBERON:0007418 {source="FMA"} ! decussation of neuraxis relationship: part_of UBERON:0001894 intersection_of: UBERON:0007418 ! decussation of neuraxis intersection_of: part_of UBERON:0001894 ! diencephalon relationship: part_of UBERON:0001894 {source="Obol"} ! diencephalon [Term] id: UBERON:0007440 name: stratum intermedium def: "The stratum intermedium in a developing tooth is a layer of two or three cells between the inner enamel epithelium and the newly forming cells of the stellate reticulum. It first appears during the early bell stage of tooth development, at around the 14th week of intrauterine life (in humans). The stratum intermedium has a notably high alkaline phosphatase activity. This layer, along with the inner enamel epithelium, is responsible for the tooth enamel formation. It is a part of the dental (enamel) organ." [Wikipedia:Stratum_intermedium] xref: BTO:0005009 xref: ncithesaurus:Stratum_Intermedium is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0000119 ! cell layer is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue relationship: part_of UBERON:0005176 {source="BTO"} ! tooth enamel organ [Term] id: UBERON:0007473 name: cavity of vesicle alt_id: EHDAA2:0003079 def: "The space within an epithelial sphere." [AEO:JB] xref: AEO:0000079 is_a: UBERON:0000464 ! implied link automatically realized ! anatomical space relationship: surrounded_by UBERON:0007503 intersection_of: UBERON:0000464 {source="AEO"} ! anatomical space intersection_of: surrounded_by UBERON:0007503 ! epithelial vesicle [Term] id: UBERON:0007475 name: matrix-based tissue alt_id: EHDAA2:0003081 def: "A tissue whose predominant feature is extracellular matrix which may or may not be highly hydrated or calcified." [AEO:JB] xref: AEO:0000081 xref: EHDAA2:0003081 is_a: UBERON:0000479 {source="AEO"} ! tissue [Term] id: UBERON:0007486 name: fluid-based anatomical entity alt_id: EHDAA2:0003095 def: "Fluid anatomical entity containing cells." [AEO:JB] xref: AEO:0000095 xref: EHDAA2:0003095 is_a: UBERON:0000481 {source="AEO"} ! multi-tissue structure [Term] id: UBERON:0007490 name: keratin-based acellular structure alt_id: EHDAA2:0003099 def: "Acellular anatomical structure whose predominant constituent is keratin." [AEO:JB] xref: AEO:0000099 is_a: UBERON:0000476 {source="AEO"} ! acellular anatomical structure [Term] id: UBERON:0007491 name: chitin-based acellular structure alt_id: EHDAA2:0003100 def: "Acellular anatomical structure whose predominant constituent is chitin." [AEO:JB] xref: AEO:0000100 is_a: UBERON:0000476 {source="AEO"} ! acellular anatomical structure [Term] id: UBERON:0007497 name: developing epithelial placode alt_id: EHDAA2:0003112 def: "A domain of columnar epithelium in an embryo that represents the early stage of the development of the epithelial component of a new anatomical structure." [JB:DEF] synonym: "epithelial placode" EXACT [AEO:0000112] xref: AEO:0000112 xref: AEO:0000218 xref: EHDAA2:0003112 is_a: UBERON:0000485 {source="AEO"} ! simple columnar epithelium is_a: UBERON:0001048 ! primordium relationship: develops_into UBERON:0000061 intersection_of: UBERON:0000483 ! epithelium intersection_of: develops_into UBERON:0000061 ! anatomical structure [Term] id: UBERON:0007499 name: epithelial sac def: "An epithelial tube that is open at one end only." [AEO:JB] xref: AEO:0000115 xref: EHDAA2:0003115 is_a: UBERON:0003914 {source="AEO"} ! epithelial tube is_a: UBERON:0009856 ! implied link automatically realized ! sac [Term] id: UBERON:0007500 name: epithelial tube open at both ends def: "An epithelial tube open at both ends that allows fluid flow." [AEO:JB] xref: AEO:0000116 xref: EHDAA2:0003116 is_a: UBERON:0003914 {source="AEO"} ! epithelial tube [Term] id: UBERON:0007501 name: arborizing epithelial duct system alt_id: EHDAA2:0003117 def: "A collection of connected epithelial tubes with a single portal." [AEO:JB] synonym: "arborising epithelial duct system" EXACT [AEO:0000117] xref: AEO:0000117 xref: EHDAA2:0003117 is_a: UBERON:0000480 ! anatomical group relationship: has_part UBERON:0003914 {source="AEO"} ! epithelial tube [Term] id: UBERON:0007502 name: epithelial plexus alt_id: EHDAA2:0003118 def: "A complex of interlinking epithelial tubules." [AEO:JB] xref: AEO:0000118 xref: EHDAA2:0003118 is_a: UBERON:0000480 ! anatomical group relationship: has_part UBERON:0003914 {source="AEO"} ! epithelial tube [Term] id: UBERON:0007503 name: epithelial vesicle alt_id: EHDAA2:0003119 def: "A closed epithelium with a lumen." [AEO:JB] xref: AEO:0000119 xref: EHDAA2:0003119 is_a: UBERON:0000483 {source="AEO"} ! epithelium [Term] id: UBERON:0007521 name: smooth muscle sphincter def: "A ring of smooth muscle cells whose contraction closes the opening of the ring." [AEO:JB] xref: AEO:0000143 xref: EHDAA2:0003143 xref: SCTID:362915001 is_a: UBERON:0001135 {source="AEO"} ! smooth muscle tissue is_a: UBERON:0004590 ! implied link automatically realized ! sphincter muscle [Term] id: UBERON:0007522 name: striated muscle sphincter def: "A ring of striated muscle cells whose contraction closes the opening of the ring." [AEO:JB] xref: AEO:0000144 xref: EHDAA2:0003144 is_a: UBERON:0002036 {source="AEO"} ! striated muscle tissue is_a: UBERON:0004590 ! implied link automatically realized ! sphincter muscle [Term] id: UBERON:0007524 name: dense mesenchyme tissue alt_id: EHDAA2:0003146 def: "Mesenchyme with little extracellular matrix." [AEO:JB] xref: AEO:0000146 xref: EHDAA2:0003146 is_a: UBERON:0003104 {source="AEO"} ! mesenchyme [Term] id: UBERON:0007529 name: loose mesenchyme tissue alt_id: EHDAA2:0003151 def: "Mesenchyme whose cells are embedded in obvious amounts of extracellular matrix." [AEO:JB] xref: AEO:0000151 xref: EHDAA2:0003151 is_a: UBERON:0003104 {source="AEO"} ! mesenchyme [Term] id: UBERON:0007530 name: migrating mesenchyme population alt_id: EHDAA2:0003152 def: "Mesenchymal cells that are migrating." [AEO:JB] xref: AEO:0000152 xref: EHDAA2:0003152 is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme [Term] id: UBERON:0007540 name: surface sense organ comment: obsoleted due to incorrect logical definition. A new class with the same name may be created in the future. xref: AEO:0000173 xref: EHDAA2:0003173 is_obsolete: true [Term] id: UBERON:0007567 name: regenerating anatomical structure alt_id: EHDAA2:0003233 def: "An anatomical structure that, as part of its normal physiology, undergoes regeneration. Examples include endometrium and antlers." [AEO:JB] synonym: "regenerating tissue" EXACT [ZFA:0005147] xref: AEO:0000200 xref: EHDAA2:0003233 xref: XAO:0004059 xref: ZFA:0005147 is_a: UBERON:0000061 {source="AEO"} ! anatomical structure [Term] id: UBERON:0007573 name: migrating epithelium alt_id: EHDAA2:0003251 def: "An epithelium that extends its surface area by peripheral movement." [AEO:JB] xref: AEO:0000206 xref: EHDAA2:0003251 is_a: UBERON:0000483 {source="AEO"} ! epithelium [Term] id: UBERON:0007574 name: apical epidermal cap synonym: "apical epidermal caps" EXACT PLURAL [ZFA:0005148] xref: TAO:0005148 xref: ZFA:0005148 xref: ZFIN:ZDB-ANAT-070928-184 is_a: UBERON:0007567 {source="ZFA"} ! regenerating anatomical structure [Term] id: UBERON:0007589 name: ciliated columnar oviduct epithelium comment: in FMA, epithelium of uterine tube is a subclass of ciliated columnar epithelium. MA introduces subtypes: ciliated columnar and cuboidal. We map the FMA type according to its relationships, not its label xref: FMA:62016 xref: MA:0001719 is_a: UBERON:0004804 {source="MA"} ! oviduct epithelium is_a: UBERON:0007592 {source="FMA"} ! ciliated columnar epithelium relationship: part_of UBERON:0000993 intersection_of: UBERON:0007592 ! ciliated columnar epithelium intersection_of: part_of UBERON:0000993 ! oviduct [Term] id: UBERON:0007590 name: cuboidal oviduct epithelium xref: MA:0001720 is_a: UBERON:0004804 {source="MA"} ! oviduct epithelium [Term] id: UBERON:0007592 name: ciliated columnar epithelium def: "Simple columnar epithelium in which the luminal side of the cells bears cilia. Examples: epithelium of trachea, epithelium of uterine tube.[FMA]" [FMA:64798] xref: FMA:64798 is_a: UBERON:0000485 {source="FMA"} ! simple columnar epithelium is_a: UBERON:0007601 ! implied link automatically realized ! ciliated epithelium [Term] id: UBERON:0007601 name: ciliated epithelium is_a: UBERON:0000483 ! implied link automatically realized ! epithelium [Term] id: UBERON:0007602 name: stratified columnar epithelium def: "Multilaminar epithelium which consists of more than one layer of columnar cells, only one layer of which is in contact with a basement membrane. Examples: ciliated stratified columnar epithelium, epithelium of lactiferous sinus.[FMA]" [FMA:45564] synonym: "epithelium stratificatum columnare" EXACT [FMA:45564] xref: FMA:45564 xref: ncithesaurus:Stratified_Columnar_Epithelium is_a: UBERON:0000486 {source="FMA"} ! multilaminar epithelium [Term] id: UBERON:0007603 name: stratified cuboidal epithelium def: "Stratified cuboidal epithelia is a rare type of epithelial tissue composed of cuboidally shaped cells arranged in multiple layers. They protect areas such as ducts of sweat glands, mammary glands, and salivary glands." [Wikipedia:Stratified_cuboidal_epithelium] synonym: "epithelium stratificatum cuboideum" EXACT [FMA:63912] xref: FMA:63912 xref: ncithesaurus:Stratified_Cuboidal_Epithelium is_a: UBERON:0000486 {source="FMA"} ! multilaminar epithelium [Term] id: UBERON:0007606 name: ciliated stratified columnar epithelium xref: FMA:67521 is_a: UBERON:0007601 ! implied link automatically realized ! ciliated epithelium is_a: UBERON:0007602 {source="FMA"} ! stratified columnar epithelium [Term] id: UBERON:0007607 name: small intestine villus xref: MA:0001563 is_a: UBERON:0001213 ! implied link automatically realized ! intestinal villus relationship: part_of UBERON:0002108 intersection_of: UBERON:0001213 ! intestinal villus intersection_of: part_of UBERON:0002108 ! small intestine relationship: part_of UBERON:0002108 {source="MA"} ! small intestine [Term] id: UBERON:0007610 name: tibial artery def: "The anterior and posterior arteries created at the bifurcation of the popliteal artery. The anterior tibial artery begins at the lower border of the popliteus muscle and lies along the tibia at the distal part of the leg to surface superficially anterior to the ankle joint. Its branches are distributed throughout the leg, ankle, and foot. The posterior tibial artery begins at the lower border of the popliteus muscle, lies behind the tibia in the lower part of its course, and is found situated between the medial malleolus and the medial process of the calcaneal tuberosity. Its branches are distributed throughout the leg and foot." [MESH:A.07.231.114.895] xref: GAID:514 xref: MA:0002067 xref: MESH:A.07.231.114.895 xref: ncithesaurus:Tibial_Artery xref: SCTID:181351007 is_a: UBERON:0001637 {source="MESH"} ! artery is_a: UBERON:0003516 ! implied link automatically realized ! hindlimb blood vessel relationship: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0007612 name: extensor digitorum communis def: "A muscle on the back of the forearm that extends the fingers and wrist." [BTO:0001343, Wikipedia:Extensor_digitorum_muscle] synonym: "extensor digitorum" EXACT [FMA:38500] xref: BTO:0001343 xref: FMA:38500 xref: MA:0002293 xref: ncithesaurus:Extensor_Digitorum_Communis is_a: UBERON:0000311 {source="BTO"} ! extensor muscle is_a: UBERON:0004254 ! implied link automatically realized ! forelimb zeugopod muscle relationship: part_of UBERON:0002386 {source="BTO"} ! forelimb zeugopod [Term] id: UBERON:0007613 name: extensor digitorum lateralis comment: Origin distal to extensor digitorum communis. The part of this muscle that gives a tendon to the 5th digit is comparable to the extensor digiti quinti proprius of the human [ISBN10:9780716717553] xref: MA:0002294 xref: ncithesaurus:Extensor_Digitorum_Lateralis is_a: UBERON:0000311 {source="BTO"} ! extensor muscle is_a: UBERON:0004254 ! implied link automatically realized ! forelimb zeugopod muscle relationship: part_of UBERON:0002386 ! forelimb zeugopod [Term] id: UBERON:0007614 name: extensor digiti minimi def: "The extensor minimi digiti (extensor digiti quinti proprius) is a slender muscle of the forearm, placed on the ulnar side of the Extensor digitorum communis, with which it is generally connected. It arises from the common Extensor tendon by a thin tendinous slip, from the intermuscular septa between it and the adjacent muscles. Its tendon runs through a compartment of the dorsal carpal ligament behind the distal radio-ulnar joint, then divides into two as it crosses the hand, and finally joins the expansion of the Extensor digitorum communis tendon on the dorsum of the first phalanx of the little finger[WP]." [http://www.anatomyatlases.org/AnatomicVariants/MuscularSystem/Text/E/14Extensor.shtml, Wikipedia:Extensor_digiti_minimi_muscle] comment: The tendon of insertion is sometimes divided and gives a slip to the fourth digit. An ulnar slip has been observed to end on the base of the fifth metacarpal, thus exactly reproducing the arrangement of the serially homologous slip known as peroneus tertius in the leg. The muscle may be absent in rare cases, but fusion with extensor digitorum is frequent, in which case the tendon comes from the common extensor. synonym: "extensor digiti minimi" RELATED [Wikipedia:Extensor_digiti_minimi_muscle] synonym: "extensor digiti minimi %28hand%29" RELATED [Wikipedia:Extensor_digiti_minimi_muscle] synonym: "extensor digiti quinti proprius" RELATED [http://www.anatomyatlases.org/AnatomicVariants/MuscularSystem/Text/E/14Extensor.shtml, Wikipedia:Extensor_digiti_minimi_muscle] xref: FMA:38503 is_a: UBERON:0000311 ! extensor muscle is_a: UBERON:0004254 ! implied link automatically realized ! forelimb zeugopod muscle relationship: part_of UBERON:0002386 ! forelimb zeugopod [Term] id: UBERON:0007615 name: prostate gland ventral lobe def: "Prostate gland lobe that in the mouse has the following characteristics: grossly, clear, gelatinous, and leaf-like; originates ventrally and wraps incompletely around the urethra dorsally, bilaterally. Simple columnar epithelium with the least amount of infolding. Secretory cells are oval and have slightly foamy cytoplasm; nuclei and basal nucleoli are inconspicuous. The secretion is pale and homogeneous. The stroma is thin" [PMID:15163300] xref: BTO:0000490 xref: MA:0001740 is_a: UBERON:0001328 {source="MA"} ! lobe of prostate [Term] id: UBERON:0007616 name: synovial tissue def: "A thin, loose vascular connective tissue that makes up the membranes surrounding joints and the sheaths protecting tendons (particularly flexor tendons in the hands and feet) where they pass over bony prominences. Synovial tissue contains synovial cells, which secrete a viscous liquid called synovial fluid; this liquid contains protein and hyaluronic acid and serves as a lubricant and nutrient for the joint cartilage surfaces[BTO]. Synovial tissue can be found in tendons (tissues that connect muscle to bone), bursae (fluid-filled, cushioning sacs found in spaces between tendons, ligaments, and bones), and the cavity (hollow enclosed area) that separates the bones of a freely movable joint, such as the knee or elbow[BTO]." [BTO:0001338, http://www.britannica.com/EBchecked/topic/578563/synovial-tissue] xref: BTO:0001338 is_a: UBERON:0002384 {source="BTO"} ! connective tissue relationship: secretes UBERON:0001090 ! synovial fluid [Term] id: UBERON:0007617 name: synovial cavity of joint synonym: "articular cavity (synovial joint)" EXACT [FMA:11356] synonym: "cavitas articularis (junctura synovialis)" EXACT [FMA:11356] synonym: "cavity of synovial joint" EXACT [FMA:11356] xref: FMA:11356 is_a: UBERON:0002553 ! implied link automatically realized ! anatomical cavity relationship: surrounded_by UBERON:0002217 intersection_of: UBERON:0002553 ! anatomical cavity intersection_of: surrounded_by UBERON:0002217 ! synovial joint [Term] id: UBERON:0007618 name: synovial cavity of hip joint xref: EMAPA:19021 xref: FMA:9701 is_a: UBERON:0007617 ! implied link automatically realized ! synovial cavity of joint relationship: part_of UBERON:0001486 intersection_of: UBERON:0007617 ! synovial cavity of joint intersection_of: part_of UBERON:0001486 ! hip joint relationship: part_of UBERON:0001486 {source="FMA"} ! hip joint [Term] id: UBERON:0007619 name: limiting membrane of retina comment: MA does treat internal/external limiting membranes as layers - these are classified as laminae. We do not follow this convention. However, we do following MA is grouping these terms together synonym: "retina lamina" EXACT [MA:0001318] xref: MA:0001318 xref: SCTID:280667001 is_a: UBERON:0001781 {source="UBERON"} ! layer of retina is_a: UBERON:0003902 ! implied link automatically realized ! retinal neural layer relationship: part_of UBERON:0003902 ! retinal neural layer [Term] id: UBERON:0007622 name: pecten oculi def: "a comb-like structure of blood vessels belonging to the choroid in the eye of a bird or reptile. It is non-sensory and is a pigmented structure that projects into the vitreous body from the point where the optic nerve enters the eyeball. The pecten is believed to both nourish the retina and control the pH of the vitreous body." [Wikipedia:Pecten_oculi] is_a: UBERON:0002049 ! vasculature is_a: UBERON:0002203 ! implied link automatically realized ! vasculature of eye relationship: part_of UBERON:0001776 ! choroid [Term] id: UBERON:0007623 name: comb and wattle def: "A wattle is a fleshy dewlap or caruncle hanging from various parts of the head or neck in several groups of birds, goats and other animals. In some birds the caruncle is erectile tissue." [Wikipedia:Wattle_(anatomy)] synonym: "comb" RELATED [GAID:1207] synonym: "wattle" RELATED [GAID:1207] synonym: "wattles and comb" RELATED [GAID:1207] xref: GAID:1207 xref: MESH:A.13.242 is_a: UBERON:0000061 {source="GAID"} ! anatomical structure [Term] id: UBERON:0007625 name: pigment epithelium of eye def: " epithelial layer of the retina, ciliary body, or iris composed of cells containing pigment granules." [MP:0005200] synonym: "eye pigment epithelium" RELATED [MESH:A.09.371.670] xref: GAID:907 xref: MESH:A.09.371.670 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium relationship: part_of UBERON:0000970 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000970 ! eye [Term] id: UBERON:0007626 name: subparaventricular zone xref: ABA:SBPV xref: MA:0000842 is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0003048 ! implied link automatically realized ! regional part of hypothalamus relationship: part_of UBERON:0002272 {source="MA"} ! medial zone of hypothalamus relationship: spatially_disjoint_from UBERON:0001934 {source="ABA"} ! dorsomedial nucleus of hypothalamus relationship: spatially_disjoint_from UBERON:0002034 {source="ABA"} ! suprachiasmatic nucleus relationship: spatially_disjoint_from UBERON:0002219 {source="ABA"} ! subfornical organ relationship: spatially_disjoint_from UBERON:0002625 {source="ABA"} ! median preoptic nucleus relationship: spatially_disjoint_from UBERON:0002689 {source="ABA"} ! supraoptic crest relationship: spatially_disjoint_from UBERON:0002690 {source="ABA"} ! anteroventral periventricular nucleus [Term] id: UBERON:0007627 name: magnocellular nucleus xref: ABA:MA xref: MA:0000928 is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon relationship: part_of UBERON:0006514 {source="ABA"} ! pallidum relationship: spatially_disjoint_from UBERON:0003017 {source="ABA"} ! substantia innominata [Term] id: UBERON:0007628 name: lateral septal complex comment: todo - split nucleus and complex xref: ABA:LSX xref: FMA:61878 xref: MA:0000933 is_a: UBERON:0002663 {source="MA"} ! septal nuclear complex relationship: part_of UBERON:0002435 {source="ABA"} ! striatum [Term] id: UBERON:0007629 name: medial septal complex xref: ABA:MSC xref: FMA:61879 xref: MA:0000934 is_a: UBERON:0002663 {source="MA"} ! septal nuclear complex relationship: spatially_disjoint_from UBERON:0002977 {source="ABA"} ! triangular septal nucleus [Term] id: UBERON:0007630 name: septohippocampal nucleus xref: ABA:SH xref: MA:0000939 is_a: UBERON:0002663 {source="MA"} ! septal nuclear complex relationship: part_of UBERON:0007628 ! lateral septal complex relationship: spatially_disjoint_from UBERON:0001878 {source="ABA"} ! septofimbrial nucleus relationship: spatially_disjoint_from UBERON:0002667 {source="ABA"} ! lateral septal nucleus [Term] id: UBERON:0007631 name: accessory olfactory bulb glomerular layer xref: ABA:AOBgl xref: MA:0000967 is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon relationship: part_of UBERON:0004069 {source="ABA"} ! accessory olfactory bulb [Term] id: UBERON:0007632 name: barrington's nucleus xref: ABA:B xref: MA:0001011 is_a: UBERON:0006331 {source="MA"} ! brainstem nucleus is_a: UBERON:0009662 ! implied link automatically realized ! hindbrain nucleus relationship: part_of UBERON:0000988 {source="MA"} ! pons relationship: spatially_disjoint_from UBERON:0002143 {source="ABA"} ! dorsal tegmental nucleus relationship: spatially_disjoint_from UBERON:0002147 {source="ABA"} ! reticulotegmental nucleus relationship: spatially_disjoint_from UBERON:0002149 {source="ABA"} ! superior salivatory nucleus relationship: spatially_disjoint_from UBERON:0002151 {source="ABA"} ! pontine nuclear group relationship: spatially_disjoint_from UBERON:0002633 {source="ABA"} ! motor nucleus of trigeminal nerve relationship: spatially_disjoint_from UBERON:0002682 {source="ABA"} ! abducens nucleus relationship: spatially_disjoint_from UBERON:0002963 {source="ABA"} ! caudal pontine reticular nucleus relationship: spatially_disjoint_from UBERON:0002968 {source="ABA"} ! central gray substance of pons relationship: spatially_disjoint_from UBERON:0003011 {source="ABA"} ! facial motor nucleus [Term] id: UBERON:0007633 name: nucleus of trapezoid body comment: consider splitting into nucleus and complex xref: ABA:NTB xref: BM:NTB xref: FMA:84023 xref: MA:0001018 xref: NIF_GrossAnatomy:birnlex_745 xref: SCTID:362405000 is_a: UBERON:0006331 {source="MA"} ! brainstem nucleus is_a: UBERON:0009662 ! implied link automatically realized ! hindbrain nucleus relationship: part_of UBERON:0000988 {source="MA"} ! pons relationship: spatially_disjoint_from UBERON:0002126 {source="ABA"} ! solitary tract nuclear complex relationship: spatially_disjoint_from UBERON:0002162 {source="ABA"} ! area postrema relationship: spatially_disjoint_from UBERON:0002591 {source="ABA"} ! oral part of spinal trigeminal nucleus relationship: spatially_disjoint_from UBERON:0002610 {source="ABA"} ! cochlear nuclear complex relationship: spatially_disjoint_from UBERON:0002864 {source="ABA"} ! accessory cuneate nucleus relationship: spatially_disjoint_from UBERON:0002866 {source="ABA"} ! caudal part of spinal trigeminal nucleus relationship: spatially_disjoint_from UBERON:0002873 {source="ABA"} ! interpolar part of spinal trigeminal nucleus [Term] id: UBERON:0007634 name: parabrachial nucleus xref: ABA:PB xref: BM:PB xref: MA:0001019 is_a: UBERON:0006331 {source="MA"} ! brainstem nucleus is_a: UBERON:0009662 ! implied link automatically realized ! hindbrain nucleus relationship: part_of UBERON:0000988 {source="MA"} ! pons relationship: spatially_disjoint_from UBERON:0002128 {source="ABA"} ! superior olivary complex relationship: spatially_disjoint_from UBERON:0002597 {source="ABA"} ! principal sensory nucleus of trigeminal nerve relationship: spatially_disjoint_from UBERON:0006840 {source="ABA"} ! nucleus of lateral lemniscus [Term] id: UBERON:0007635 name: nucleus of medulla oblongata xref: FMA:258772 xref: SCTID:304943004 is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0006331 ! implied link automatically realized ! brainstem nucleus is_a: UBERON:0009662 ! implied link automatically realized ! hindbrain nucleus relationship: part_of UBERON:0001896 intersection_of: UBERON:0000125 ! neural nucleus intersection_of: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0007637 name: hippocampus stratum lucidum def: "A cytoarchitectural term denoting the layer of the CA3 field of the HIPPOCAMPUS that is deep to the Stratum pyramidale hippocampi and superficial to the Stratum radiatum (Hof-2000)." [nif_annot:NeuroNames_defSource, Wikipedia:Stratum_lucidum_of_hippocampus] synonym: "stratum lucidum" BROAD [NIF_GrossAnatomy:birnlex_4108] xref: ncithesaurus:Stratum_Lucidum xref: NIF_GrossAnatomy:birnlex_4108 is_a: UBERON:0002305 {source="NIF_GrossAnatomy"} ! layer of hippocampus [Term] id: UBERON:0007639 name: hippocampus alveus def: "Regional part of fornix consisting of a thin layer of white matter on the surface of the hippocampal formation, bordering the wall of the lateral ventricle and composed of white, myelinated fibers. The alveus arises from cell bodies in the subiculum and hippocampus, and eventually merges with the fimbria of the hippocampus. The fimbria goes on to become the fornix (MM: 2006-10-26)." [NIF_GrossAnatomy:birnlex_1510] comment: todo - check xref: ncithesaurus:Alveus synonym: "alveus" EXACT [NIF_GrossAnatomy:birnlex_1510] synonym: "alveus of hippocampus" EXACT [FMA:83867] synonym: "neuraxis alveus" EXACT [FMA:83867] xref: FMA:83867 xref: ncithesaurus:Alveus xref: NIF_GrossAnatomy:birnlex_1510 xref: SCTID:369094002 is_a: UBERON:0002305 {source="Wikipedia"} ! layer of hippocampus [Term] id: UBERON:0007640 name: hippocampus stratum lacunosum moleculare def: "A cytoarchitectural term denoting the outermost layer of the hippocampus (Stephan-75) (NeuroNames)." [nif_annot:NeuroNames_defSource] synonym: "lacunar-molecular layer of hippocampus" EXACT [FMA:83149] synonym: "stratum lacunosum moleculare" EXACT [NIF_GrossAnatomy:birnlex_1359] synonym: "stratum lacunosum-moleculare" EXACT [ABA:ABA] xref: FMA:83149 xref: NIF_GrossAnatomy:birnlex_1359 is_a: UBERON:0002305 ! layer of hippocampus [Term] id: UBERON:0007641 name: trigeminal nuclear complex def: "The sensory trigeminal nerve nuclei are the largest of the cranial nerve nuclei, and extend through the whole of the midbrain, pons and medulla. There is also a distinct trigeminal motor nucleus that is medial to the chief sensory nucleus[WP]." [Wikipedia:Trigeminal_nerve_nuclei] comment: In MA and FMA this is part of the pons / pontime tegmentum. We weaken this to overlaps to avoid inconsistency. In NIF this is a composite structure spanning multiple regions, which is more appropriate. synonym: "trigeminal nuclei" EXACT [FMA:71248] xref: BM:V xref: FMA:71248 xref: NIF_GrossAnatomy:birnlex_4096 is_a: UBERON:0007245 {source="FMA"} ! nuclear complex of neuraxis relationship: continuous_with UBERON:0001645 ! trigeminal nerve relationship: overlaps UBERON:0003023 {source="FMA"} ! pontine tegmentum [Term] id: UBERON:0007642 name: ligamentum arteriosum def: "a small ligament attached to the superior surface of the pulmonary trunk and the inferior surface of the aortic arch. It is a nonfunctional vestige of the ductus arteriosus, and is formed within three weeks of birth. The ligamentum arteriosum is closely related to the left recurrent laryngeal nerve, a branch of the left vagus nerve. After splitting from the left vagus nerve, the left recurrent laryngeal loops around the aortic arch posterior to the ligamentum arteriosum, after which it ascends to the larynx[WP]." [Wikipedia:Ligamentum_arteriosum] synonym: "arterial ligament" RELATED [Wikipedia:Ligamentum_arteriosum] synonym: "Botallo's duct" EXACT [FMA:13421] synonym: "Botallo's ligament" EXACT [FMA:13421] synonym: "Harvey's ligament" EXACT [FMA:13421] xref: FMA:13421 xref: SCTID:198009004 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0006591 {source="FMA"} ! transformed artery relationship: develops_from UBERON:0005440 intersection_of: UBERON:0006591 ! transformed artery intersection_of: develops_from UBERON:0005440 ! ductus arteriosus [Term] id: UBERON:0007643 name: node of ligamentum arteriosum def: "an inconstant lymph node of the anterior mediastinal group located adjacent to the ligamentum arteriosum." [http://www.mondofacto.com/facts/dictionary?node+of+ligamentum+arteriosum] synonym: "Botallo's node" EXACT [FMA:74033] synonym: "ligamentum arteriosum node" EXACT [FMA:74033] synonym: "lymph node of ligamentum arteriosum" EXACT [UBERON:cjm] synonym: "nodus ligamenti arteriosi" EXACT [http://www.mondofacto.com/facts/dictionary?node+of+ligamentum+arteriosum] xref: FMA:74033 is_a: UBERON:0002524 {source="FMA"} ! mediastinal lymph node relationship: adjacent_to UBERON:0007642 ! ligamentum arteriosum [Term] id: UBERON:0007644 name: thoracic lymph node def: "A lymph node that is part of a thorax. Includes lymph nodes of the lungs and mediastinal lymph nodes" [Obol:automatic, Wikipedia:Lymph_node#Lymph_nodes_of_the_thorax] synonym: "lymph node of thorax" EXACT [FMA:12772] xref: FMA:12772 xref: ncithesaurus:Thoracic_Lymph_Node xref: SCTID:196374005 is_a: UBERON:0000029 {source="FMA"} ! lymph node relationship: part_of UBERON:0000915 intersection_of: UBERON:0000029 ! lymph node intersection_of: part_of UBERON:0000915 ! thoracic segment of trunk [Term] id: UBERON:0007645 name: future meninx is_a: UBERON:0005423 ! developing anatomical structure relationship: develops_from UBERON:0000926 ! mesoderm relationship: develops_into UBERON:0002360 ! meninx relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0007646 name: endomeninx def: "the layer of embryonic mesoderm from which the arachnoid coat and pia mater of the brain develop." [http://www.merriam-webster.com/medical/endomeninx] is_a: UBERON:0007645 ! future meninx [Term] id: UBERON:0007647 name: ectomeninx def: "the layer of mesoderm from which the dura mater and much of the membrane bone of the skull develop in the higher vertebrate embryo." [http://www.merriam-webster.com/medical/ectomeninx] is_a: UBERON:0007645 ! future meninx [Term] id: UBERON:0007650 name: esophagogastric junction def: "the junction between the esophagus and the stomach epithelium" [http://www.thefreedictionary.com/esophagogastric+junction] synonym: "cardioesophageal junction" EXACT [FMA:9434] synonym: "esophageal sphincter" RELATED [MESH:A.03.365.414] synonym: "esophagogastric junction" RELATED [MESH:A.03.365.414] synonym: "gastroesophageal junction" EXACT [FMA:9434] xref: BTO:0004364 xref: FMA:9434 xref: GAID:292 xref: MESH:A.03.365.414 xref: ncithesaurus:Gastroesophageal_Junction xref: SCTID:362130006 is_a: UBERON:0007651 ! anatomical junction relationship: adjacent_to UBERON:0001043 {source="MESH"} ! esophagus relationship: adjacent_to UBERON:0001276 {source="tFD"} ! epithelium of stomach [Term] id: UBERON:0007651 name: anatomical junction def: "Anatomical structure in which parts of two or more anatomical structures establish physical continuity with one another or intermingle their component parts. Examples: gastroesophageal junction, line alba, knee joint.[FMA]" [FMA:5898] subset: upper_level xref: FMA:5898 xref: SCTID:91833003 is_a: UBERON:0000061 {source="FMA"} ! anatomical structure [Term] id: UBERON:0007652 name: esophageal sphincter comment: editor note - check for specific subtypes across species. Note mammals have upper and lower, but lower is really part of cardia and thus is not classified under here synonym: "oesophagial sphincter" EXACT [ZFA:0000415] xref: SCTID:277765007 xref: ZFA:0000415 is_a: UBERON:0003832 ! implied link automatically realized ! esophagus muscle is_a: UBERON:0004590 ! implied link automatically realized ! sphincter muscle relationship: part_of UBERON:0001043 intersection_of: UBERON:0004590 ! sphincter muscle intersection_of: part_of UBERON:0001043 ! esophagus [Term] id: UBERON:0007653 name: capillary loop nephron def: "Developing nephron where the developing glomerular capsule has been invaded by a glomerular capillary loop called the glomerular tuft." [ZFIN:curator] comment: TODO synonym: "developing capillary loop stage nephron" EXACT [EMAPA:28506] synonym: "stage III nephron" EXACT [http://www.gudmap.org/Organ_Summaries/Metanephros/Capillary_loop.html] xref: EMAPA:28506 xref: ZFA:0005590 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: develops_from UBERON:0004199 {source="ZFA"} ! S-shaped body [Term] id: UBERON:0007654 name: maturing nephron comment: TODO synonym: "stage IV nephron" RELATED [EMAPA:28485] xref: EMAPA:28485 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: develops_from UBERON:0007653 ! capillary loop nephron relationship: part_of UBERON:0001225 {source="EMAPA"} ! cortex of kidney [Term] id: UBERON:0007656 name: lateral recess of fourth ventricle def: "The lateral recess is a projection of the fourth ventricle which extends into the inferior cerebellar peduncle of the brainstem. The lateral aperture, an opening in each extremity of the lateral recess, provides a conduit for cerebrospinal fluid to flow from the brain's ventricular system into the subarachnoid space." [Wikipedia:Lateral_recess] synonym: "lateral recess" BROAD [EMAPA:17257] xref: EMAPA:17257 xref: FMA:78470 xref: SCTID:369283008 is_a: UBERON:0000464 {source="FMA"} ! anatomical space relationship: part_of UBERON:0002422 {source="EMAPA"} ! fourth ventricle [Term] id: UBERON:0007657 name: anular ligament of radius def: "The anular ligament (orbicular ligament) is a strong band of fibers, which encircles the head of the radius (bone), and retains it in contact with the radial notch of the ulna" [Wikipedia:Anular_ligament_of_radius] synonym: "annular ligament of radius" EXACT [FMA:38872] synonym: "anular ligament" BROAD [EMAPA:19322] synonym: "ligamentum anulare radii" EXACT [FMA:38872, FMA:TA] synonym: "orbicular ligament of radius" EXACT [FMA:38872] xref: EMAPA:19322 xref: FMA:38872 xref: SCTID:182394000 is_a: UBERON:0000211 ! ligament is_a: UBERON:0003574 ! implied link automatically realized ! elbow connective tissue is_a: UBERON:0003575 ! implied link automatically realized ! wrist connective tissue is_a: UBERON:0003598 ! implied link automatically realized ! hand connective tissue is_a: UBERON:0008846 ! implied link automatically realized ! skeletal ligament relationship: part_of UBERON:0001490 {source="FMA"} ! elbow joint relationship: part_of UBERON:0007165 {source="FMA"} ! proximal radio-ulnar joint [Term] id: UBERON:0007679 name: intersegmental vein def: "a vein receiving blood from adjacent bronchopulmonary segments; it emerges from the inferior margin of a segment to become a tributary of a branch of a pulmonary vein[web]. Primary intersegmental vessels that are contacted by secondary angiogenic sprouts from the posterior cardinal vein and take on the characteristics of veins. These eventually link with other secondary sprouts from the posterior cardinal vein to form the parachordal vessel[ZFA]." [http://www.medilexicon.com/medicaldictionary.php?t=97310, ZFIN:ZDB-PUB-030908-4] synonym: "intersegmental pulmonary vein" EXACT [FMA:76965] synonym: "ISV" BROAD [ZFA:0001057] synonym: "segmental vein" RELATED [EMAPA:26056] xref: EMAPA:26056 xref: FMA:76965 xref: SCTID:361448009 xref: ZFA:0001057 is_a: UBERON:0002016 {source="FMA"} ! pulmonary vein [Term] id: UBERON:0007681 name: facial neural crest def: "Cranial neural crest that is part of the facial region." [ZFA:0000875] xref: EMAPA:16311 xref: OG:0001209 xref: ZFA:0000875 is_a: UBERON:0003099 {source="ZFA"} ! cranial neural crest is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0003104 {source="OG"} ! mesenchyme relationship: part_of UBERON:0007213 {source="EMAPA"} ! mesenchyme derived from head neural crest [Term] id: UBERON:0007683 name: lateral mesenchyme derived from mesoderm xref: EFO:0003590 xref: EMAPA:16409 xref: ZFA:0000905 is_a: UBERON:0005256 {source="ZFA"} ! trunk mesenchyme [Term] id: UBERON:0007684 name: uriniferous tubule def: "functional unit of the kidney that forms urine, consisting of two parts, the nephron and the collecting tubule." [ISBN10:0073040584 "Vertebrates, Kardong"] xref: FMA:17691 is_a: UBERON:0003914 ! epithelial tube is_a: UBERON:0004819 ! implied link automatically realized ! kidney epithelium is_a: UBERON:0006555 ! implied link automatically realized ! excretory tube relationship: part_of UBERON:0002113 {source="FMA"} ! kidney [Term] id: UBERON:0007685 name: region of nephron tubule comment: note - consider moving MA:0000377 renal tubule here, as it includes the various segments (proximal etc) as subclasses, not parts synonym: "renal tubule region" EXACT [FMA:17692] xref: FMA:17692 is_a: UBERON:0001231 ! implied link automatically realized ! nephron tubule is_a: UBERON:0003914 ! epithelial tube is_a: UBERON:0004810 ! implied link automatically realized ! nephron tubule epithelium relationship: part_of UBERON:0001231 ! nephron tubule [Term] id: UBERON:0007686 name: Hatschek's pit/nephridium is_obsolete: true [Term] id: UBERON:0007687 name: kidney field def: "region of the embryo into the area in which the kidney rudiment will develop." [GO:0072004, GOC:mtg_kidney_jan10] synonym: "kidney anlage" RELATED [GOC:mtg_kidney_jan10] is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0007688 name: anlage def: "Anlagen are populations of contiguous cells, typically arranged in one plane, that are morphologically indistinct, but that already correspond in extent to a later organ/tissue." [FBbt:00005426, JB:DEF, Wikipedia:Anlage_(biology)] synonym: "field" RELATED [] xref: AEO:0000170 xref: EHDAA2:0003170 xref: FBbt:00005426 is_a: UBERON:0000479 {source="FBbt"} ! tissue is_a: UBERON:0005423 {source="EHDAA2"} ! developing anatomical structure [Term] id: UBERON:0007689 name: thyroid diverticulum def: "endodermal bud derived from the endodermal epithelium of the embryonic pharyngeal floor[MP]. The thyroid diverticulum is the embryological structure from which thyroid follicular cells derive. It grows from the floor of the pharnyx[WP]." [MP:0004662, Wikipedia:Thyroid_diverticulum] is_a: UBERON:0001048 ! primordium relationship: develops_from UBERON:0003091 ! thyroid primordium [Term] id: UBERON:0007690 name: early pharyngeal endoderm def: "." [http://dev.biologists.org/content/128/22/4573.full] comment: relation conflict: ZFA vs EHDAA2. Note EHDAA2 term renamed to 'early PA endoderm' synonym: "early pharyngeal arch endoderm" EXACT [EHDAA2:0001457] synonym: "pharyngeal arch endoderm" RELATED [] synonym: "pharyngeal endoderm" RELATED [ZFA:0001104] synonym: "pharyngeal region endoderm" RELATED [EHDAA2:0001456] xref: EFO:0003626 xref: EHDAA:962 xref: EHDAA2:0001457 xref: ZFA:0001104 is_a: UBERON:0000925 {source="ZFA"} ! endoderm is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: develops_from UBERON:0000925 {source="EHDAA2"} ! endoderm relationship: part_of UBERON:0008814 ! pharyngeal system relationship: part_of UBERON:0009722 {source="cjm"} ! entire pharyngeal arch endoderm [Term] id: UBERON:0007691 name: gustatory pore def: "The minute opening of a taste bud on the surface of the oral mucosa through which the gustatory hairs of the specialised neuroepithelial gustatory cells project. " [http://www.mondofacto.com/facts/dictionary?gustatory+pore] synonym: "porus gustatorius" EXACT [http://www.mondofacto.com/facts/dictionary?gustatory+pore] synonym: "taste pore" EXACT [FMA:63589] xref: FMA:63589 xref: http://upload.wikimedia.org/wikipedia/commons/0/0e/Taste_bud.svg xref: ncithesaurus:Taste_Pore xref: SCTID:368724008 is_a: UBERON:0000161 {source="FMA"} ! orifice is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001727 intersection_of: UBERON:0000161 ! orifice intersection_of: part_of UBERON:0001727 ! taste bud relationship: continuous_with UBERON:0000167 ! oral cavity relationship: part_of UBERON:0001727 {source="FMA"} ! taste bud [Term] id: UBERON:0007692 name: nucleus of thalamus comment: todo - consider splitting nucleus and complex synonym: "nuclear complex of thalamus" EXACT [FMA:256693] xref: BTO:0002452 xref: FMA:256693 xref: MA:0002992 xref: SCTID:279115000 is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus is_a: UBERON:0006569 ! implied link automatically realized ! diencephalic nucleus relationship: part_of UBERON:0001897 intersection_of: UBERON:0002308 ! nucleus of brain intersection_of: part_of UBERON:0001897 {source="FMA"} ! thalamus [Term] id: UBERON:0007693 name: caroticotympanic artery def: "The caroticotympanic branch (tympanic branch) is small; it enters the tympanic cavity through a minute foramen in the carotid canal, and anastomoses with the anterior tympanic branch of the internal maxillary, and with the stylomastoid artery." [Wikipedia:Caroticotympanic_arteries] synonym: "caroticotympanic branch" RELATED [Wikipedia:Caroticotympanic_arteries] xref: FMA:49828 xref: SCTID:148470005 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0001637 ! artery is_a: UBERON:0005911 ! implied link automatically realized ! endo-epithelium relationship: branch_of UBERON:0001532 {source="FMA"} ! internal carotid artery relationship: develops_from UBERON:0005608 {source="http://www.ajnr.org/cgi/content/full/21/3/572"} ! hyoid artery [Term] id: UBERON:0007699 name: tract of spinal cord synonym: "spinal cord tract" EXACT [FMA:75683] xref: FMA:75683 xref: ncithesaurus:Spinal_Cord_Tract is_a: UBERON:0001018 {source="FMA"} ! axon tract [Term] id: UBERON:0007702 name: tract of brain comment: todo - check NIF placement synonym: "brain tract" EXACT [FMA:83848] xref: FMA:83848 xref: NIF_GrossAnatomy:birnlex_1649 is_a: UBERON:0001018 {source="FMA"} ! axon tract [Term] id: UBERON:0007703 name: spinothalamic tract def: "a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the spinal cord towards target cells in the thalamus. This axonal process is a member of those that make up the spinothalamic tract, one of the major routes of nociceptive signaling[GO]." [Wikipedia:Spinothalamic_tract] xref: NIF_GrossAnatomy:nlx_anat_1010017 xref: SCTID:280417000 is_a: UBERON:0007702 ! tract of brain [Term] id: UBERON:0007707 name: superior cerebellar peduncle of midbrain def: "Regional part of superior cerebellar peduncle, located in the midbrain, consisting of a large bundle of fibers largely projecting from the deep cerebellar nuclei to the midbrain and thalamus. It is continuous with the superior cerebellar peduncle of the pons. (MM)." [NIF_GrossAnatomy:birnlex_1162] synonym: "SCPMB" EXACT [NIF_GrossAnatomy:birnlex_1162] synonym: "superior cerebellar peduncle of midbrain" EXACT [NIF_GrossAnatomy:birnlex_1162] xref: NIF_GrossAnatomy:birnlex_1162 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001943 {source="NIF"} ! midbrain tegmentum relationship: part_of UBERON:0002150 ! superior cerebellar peduncle [Term] id: UBERON:0007709 name: superior cerebellar peduncle of pons comment: note that FMA:72495 most likely denotes this class rather than the more generic parent, due to the part of relationship to pontine tegmentum. synonym: "SCPP" EXACT [NIF_GrossAnatomy:birnlex_1726] synonym: "superior cerebellar peduncle of pons" EXACT [NIF_GrossAnatomy:birnlex_1726] xref: FMA:72495 xref: NeuroNames:1007150190 xref: NIF_GrossAnatomy:birnlex_1726 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002150 ! superior cerebellar peduncle relationship: part_of UBERON:0003023 ! pontine tegmentum [Term] id: UBERON:0007710 name: intermediate nucleus of lateral lemniscus comment: todo - check synonym: "nucleus of the lateral lemniscus, horizontal part" EXACT [ABA:NLLh] xref: ABA:NLLh xref: FMA:77485 is_a: UBERON:0006840 ! nucleus of lateral lemniscus [Term] id: UBERON:0007711 name: sixth cervical dorsal root ganglion synonym: "sixth cervical dorsal root ganglia" EXACT [FMA:6319] synonym: "sixth cervical dorsal root ganglion" EXACT [NIF_GrossAnatomy:birnlex_2608] synonym: "sixth cervical spinal ganglion" EXACT [FMA:6319] xref: EMAPA:25159 xref: FMA:6319 xref: NIF_GrossAnatomy:birnlex_2608 is_a: UBERON:0002834 {source="NIF_GrossAnatomy"} ! cervical dorsal root ganglion [Term] id: UBERON:0007712 name: fourth thoracic spinal ganglion subset: defined_by_ordinal_series synonym: "forth thoracic dorsal root ganglion" EXACT [NIF_GrossAnatomy:birnlex_2614] synonym: "fourth thoracic dorsal root ganglion" EXACT [FMA:6324] synonym: "fourth thoracic dorsal root ganglion" EXACT [UBERON:cjm] xref: EMAPA:25177 xref: FMA:6324 xref: NIF_GrossAnatomy:birnlex_2614 is_a: UBERON:0002835 {source="FMA"} ! thoracic dorsal root ganglion [Term] id: UBERON:0007713 name: fourth sacral spinal ganglion synonym: "forth sacral dorsal root ganglion" EXACT [NIF_GrossAnatomy:birnlex_2631] synonym: "fourth sacral dorsal root ganglion" EXACT [FMA:6345] synonym: "fourth sacral dorsal root ganglion" EXACT [UBERON:cjm] xref: EMAPA:25173 xref: FMA:6345 xref: NIF_GrossAnatomy:birnlex_2631 is_a: UBERON:0002837 {source="FMA"} ! sacral dorsal root ganglion [Term] id: UBERON:0007714 name: cervical subsegment of spinal cord synonym: "segment part of cervical spinal cord" EXACT [NIF_GrossAnatomy:birnlex_1688] xref: FMA:256653 xref: NIF_GrossAnatomy:birnlex_1688 xref: SCTID:278749009 is_a: UBERON:0005844 {source="FMA", source="NIF"} ! spinal cord segment relationship: part_of UBERON:0002726 ! cervical spinal cord [Term] id: UBERON:0007715 name: thoracic subsegment of spinal cord synonym: "segment part of thoracic spinal cord" EXACT [NIF_GrossAnatomy:birnlex_892] xref: FMA:256655 xref: NIF_GrossAnatomy:birnlex_892 is_a: UBERON:0005844 {source="FMA", source="NIF"} ! spinal cord segment relationship: part_of UBERON:0003038 ! thoracic spinal cord [Term] id: UBERON:0007716 name: lumbar subsegment of spinal cord synonym: "segment part of lumbar spinal cord" EXACT [NIF_GrossAnatomy:birnlex_1652] xref: FMA:256657 xref: NIF_GrossAnatomy:birnlex_1652 xref: SCTID:278751008 is_a: UBERON:0005844 {source="FMA", source="NIF"} ! spinal cord segment relationship: part_of UBERON:0002792 ! lumbar spinal cord [Term] id: UBERON:0007717 name: sacral subsegment of spinal cord synonym: "segment part of sacral spinal cord" EXACT [NIF_GrossAnatomy:birnlex_1512] xref: FMA:256659 xref: NIF_GrossAnatomy:birnlex_1512 xref: SCTID:278752001 is_a: UBERON:0005844 {source="FMA", source="NIF"} ! spinal cord segment relationship: part_of UBERON:0005843 ! sacral spinal cord [Term] id: UBERON:0007718 name: principal artery to limb is_a: UBERON:0001637 {source="MA"} ! artery [Term] id: UBERON:0007719 name: os penis/os clitoris synonym: "baculum" NARROW [] is_a: UBERON:0001474 ! implied link automatically realized ! bone is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0005156 intersection_of: UBERON:0001474 ! bone intersection_of: part_of UBERON:0005156 ! reproductive structure [Term] id: UBERON:0007721 name: interphalangeal joint of toe def: "The interphalangeal articulations of the foot (articulations of the phalanges) are ginglymoid joints, and each has a plantar and two collateral ligaments. The arrangement of these ligaments is similar to that in the metatarsophalangeal articulations: the Extensor tendons supply the places of dorsal ligaments." [Wikipedia:Interphalangeal_articulations_of_the_foot] synonym: "foot interphalangeal joint" EXACT [MESH:A.02.835.583.378.900] synonym: "interphalangeal joint of foot" EXACT [FMA:35225] synonym: "toe joint" RELATED [MESH:A.02.835.583.378.900] xref: FMA:35225 xref: MESH:A.02.835.583.378.900 xref: ncithesaurus:Interphalangeal_Joint_of_the_Foot xref: SCTID:182225005 is_a: UBERON:0001487 ! implied link automatically realized ! joint of foot is_a: UBERON:0006658 {source="FMA"} ! inter-phalangeal joint relationship: part_of UBERON:0001466 intersection_of: UBERON:0006658 ! inter-phalangeal joint intersection_of: part_of UBERON:0001466 ! foot digit [Term] id: UBERON:0007722 name: interphalangeal joint of finger def: "The interphalangeal articulations of hand are hinge-joints of the phalanges of the hand. There are two sets (except in the thumb): \"proximal interphalangeal joints\" (PIP), those between the first (also called proximal) and second (intermediate) phalanges \"distal interphalangeal joints\" (DIP), those between the second and third (distal) phalanges A similar group of articulations also function in the toes." [Wikipedia:Interphalangeal_articulations_of_the_hand] synonym: "interphalangeal joint of hand" EXACT [FMA:35285] synonym: "IP joint" EXACT [FMA:35285] xref: FMA:35285 xref: ncithesaurus:Interphalangeal_Joint_of_the_Hand xref: SCTID:303280009 is_a: UBERON:0001489 ! implied link automatically realized ! joint of hand is_a: UBERON:0006658 {source="FMA"} ! inter-phalangeal joint relationship: part_of UBERON:0002389 intersection_of: UBERON:0006658 ! inter-phalangeal joint intersection_of: part_of UBERON:0002389 ! hand digit [Term] id: UBERON:0007723 name: interphalangeal joint of thumb synonym: "interphalangeal joint of first digit of hand" EXACT [FMA:35312] xref: EMAPA:25058 xref: FMA:35312 xref: SCTID:182192008 is_a: UBERON:0007722 {source="FMA"} ! interphalangeal joint of finger relationship: part_of UBERON:0001463 intersection_of: UBERON:0007722 ! interphalangeal joint of finger intersection_of: part_of UBERON:0001463 ! hand digit 1 relationship: part_of UBERON:0001463 {source="FMA"} ! hand digit 1 [Term] id: UBERON:0007724 name: interphalangeal joint of big toe synonym: "interphalangeal joint of first digit of foot" EXACT [FMA:35353] synonym: "interphalangeal joint of great toe" EXACT [FMA:35353] xref: EMAPA:26430 xref: FMA:35353 xref: SCTID:363671008 is_a: UBERON:0007721 {source="FMA"} ! interphalangeal joint of toe relationship: part_of UBERON:0003631 intersection_of: UBERON:0007721 ! interphalangeal joint of toe intersection_of: part_of UBERON:0003631 ! foot digit 1 relationship: part_of UBERON:0003631 {source="FMA"} ! foot digit 1 [Term] id: UBERON:0007725 name: interphalangeal joint of second toe synonym: "interphalangeal joint of second digit of foot" EXACT [FMA:35356] xref: EMAPA:26448 xref: FMA:35356 is_a: UBERON:0007721 {source="FMA"} ! interphalangeal joint of toe relationship: part_of UBERON:0003632 intersection_of: UBERON:0007721 ! interphalangeal joint of toe intersection_of: part_of UBERON:0003632 ! foot digit 2 relationship: part_of UBERON:0003632 {source="FMA"} ! foot digit 2 [Term] id: UBERON:0007726 name: interphalangeal joint of third toe synonym: "interphalangeal joint of third digit of foot" EXACT [FMA:35359] xref: EMAPA:26454 xref: FMA:35359 is_a: UBERON:0007721 {source="FMA"} ! interphalangeal joint of toe relationship: part_of UBERON:0003633 intersection_of: UBERON:0007721 ! interphalangeal joint of toe intersection_of: part_of UBERON:0003633 ! foot digit 3 relationship: part_of UBERON:0003633 {source="FMA"} ! foot digit 3 [Term] id: UBERON:0007727 name: interphalangeal joint of fourth toe synonym: "interphalangeal joint of fourth digit of foot" EXACT [FMA:35362] xref: EMAPA:26466 xref: FMA:35362 is_a: UBERON:0007721 {source="FMA"} ! interphalangeal joint of toe relationship: part_of UBERON:0003634 intersection_of: UBERON:0007721 ! interphalangeal joint of toe intersection_of: part_of UBERON:0003634 ! foot digit 4 relationship: part_of UBERON:0003634 {source="EMAPA"} ! foot digit 4 [Term] id: UBERON:0007728 name: interphalangeal joint of little toe synonym: "interphalangeal joint of fifth digit of foot" EXACT [FMA:35365] synonym: "interphalangeal joint of fifth toe" EXACT [FMA:35365] xref: EMAPA:26478 xref: FMA:35365 is_a: UBERON:0007721 {source="FMA"} ! interphalangeal joint of toe relationship: part_of UBERON:0003635 intersection_of: UBERON:0007721 ! interphalangeal joint of toe intersection_of: part_of UBERON:0003635 ! foot digit 5 relationship: part_of UBERON:0003635 {source="FMA"} ! foot digit 5 [Term] id: UBERON:0007729 name: interphalangeal joint of index finger synonym: "interphalangeal joint of second digit of hand" EXACT [FMA:35397] synonym: "interphalangeal joint of second finger" EXACT [FMA:35397] xref: EMAPA:25061 xref: FMA:35397 is_a: UBERON:0007722 {source="FMA"} ! interphalangeal joint of finger relationship: part_of UBERON:0003622 intersection_of: UBERON:0007722 ! interphalangeal joint of finger intersection_of: part_of UBERON:0003622 ! hand digit 2 relationship: part_of UBERON:0003622 {source="EMAPA"} ! hand digit 2 [Term] id: UBERON:0007730 name: interphalangeal joint of middle finger synonym: "interphalangeal joint of third digit of hand" EXACT [FMA:35400] synonym: "interphalangeal joint of third finger" EXACT [FMA:35400] xref: EMAPA:25064 xref: FMA:35400 is_a: UBERON:0007722 {source="FMA"} ! interphalangeal joint of finger relationship: part_of UBERON:0003623 intersection_of: UBERON:0007722 ! interphalangeal joint of finger intersection_of: part_of UBERON:0003623 ! hand digit 3 relationship: part_of UBERON:0003623 {source="EMAPA"} ! hand digit 3 [Term] id: UBERON:0007731 name: interphalangeal joint of ring finger synonym: "interphalangeal joint of fourth digit of hand" EXACT [FMA:35403] synonym: "interphalangeal joint of fourth finger" EXACT [FMA:35403] xref: EMAPA:25067 xref: FMA:35403 is_a: UBERON:0007722 {source="FMA"} ! interphalangeal joint of finger relationship: part_of UBERON:0003624 intersection_of: UBERON:0007722 ! interphalangeal joint of finger intersection_of: part_of UBERON:0003624 ! hand digit 4 relationship: part_of UBERON:0003624 {source="EMAPA"} ! hand digit 4 [Term] id: UBERON:0007732 name: interphalangeal joint of little finger synonym: "interphalangeal joint of fifth digit of hand" EXACT [FMA:35407] synonym: "interphalangeal joint of fifth finger" EXACT [FMA:35407] xref: EMAPA:25070 xref: FMA:35407 is_a: UBERON:0007722 {source="FMA"} ! interphalangeal joint of finger relationship: part_of UBERON:0003625 intersection_of: UBERON:0007722 ! interphalangeal joint of finger intersection_of: part_of UBERON:0003625 ! hand digit 5 relationship: part_of UBERON:0003625 {source="EMAPA"} ! hand digit 5 [Term] id: UBERON:0007735 name: metacarpophalangeal joint of thumb synonym: "metacarpophalangeal joint of first digit of hand" EXACT [FMA:35249] xref: EMAPA:25057 xref: FMA:35249 xref: SCTID:361844001 is_a: UBERON:0003695 ! implied link automatically realized ! metacarpophalangeal joint relationship: part_of UBERON:0001463 intersection_of: UBERON:0003695 {source="FMA"} ! metacarpophalangeal joint intersection_of: part_of UBERON:0001463 {source="FMA"} ! hand digit 1 [Term] id: UBERON:0007738 name: metacarpophalangeal joint of index finger synonym: "metacarpophalangeal joint of second digit of hand" EXACT [FMA:35252] synonym: "metacarpophalangeal joint of second finger" EXACT [FMA:35252] xref: EMAPA:25060 xref: FMA:35252 xref: SCTID:361845000 is_a: UBERON:0003695 ! implied link automatically realized ! metacarpophalangeal joint relationship: part_of UBERON:0003622 intersection_of: UBERON:0003695 {source="FMA"} ! metacarpophalangeal joint intersection_of: part_of UBERON:0003622 {source="FMA"} ! hand digit 2 [Term] id: UBERON:0007741 name: metacarpophalangeal joint of middle finger synonym: "metacarpophalangeal joint of third digit of hand" EXACT [FMA:35255] synonym: "metacarpophalangeal joint of third finger" EXACT [FMA:35255] xref: EMAPA:25063 xref: FMA:35255 xref: SCTID:361846004 is_a: UBERON:0003695 ! implied link automatically realized ! metacarpophalangeal joint relationship: part_of UBERON:0003623 intersection_of: UBERON:0003695 {source="FMA"} ! metacarpophalangeal joint intersection_of: part_of UBERON:0003623 {source="FMA"} ! hand digit 3 [Term] id: UBERON:0007744 name: metacarpophalangeal joint of ring finger synonym: "metacarpophalangeal joint of fourth digit of hand" EXACT [FMA:35258] synonym: "metacarpophalangeal joint of fourth finger" EXACT [FMA:35258] xref: EMAPA:25066 xref: FMA:35258 xref: SCTID:361847008 is_a: UBERON:0003695 ! implied link automatically realized ! metacarpophalangeal joint relationship: part_of UBERON:0003624 intersection_of: UBERON:0003695 {source="FMA"} ! metacarpophalangeal joint intersection_of: part_of UBERON:0003624 {source="FMA"} ! hand digit 4 [Term] id: UBERON:0007747 name: metacarpophalangeal joint of little finger synonym: "metacarpophalangeal joint of fifth digit of hand" EXACT [FMA:35261] synonym: "metacarpophalangeal joint of fifth finger" EXACT [FMA:35261] xref: EMAPA:25069 xref: FMA:35261 xref: SCTID:361848003 is_a: UBERON:0003695 ! implied link automatically realized ! metacarpophalangeal joint relationship: part_of UBERON:0003625 intersection_of: UBERON:0003695 {source="FMA"} ! metacarpophalangeal joint intersection_of: part_of UBERON:0003625 {source="FMA"} ! hand digit 5 [Term] id: UBERON:0007750 name: metatarsophalangeal joint of big toe comment: note the name of the structure in EMAPA is incorrect synonym: "metatarsophalangeal joint of first digit of foot" EXACT [FMA:35228] synonym: "metatarsophalangeal joint of great toe" EXACT [FMA:35228] xref: EMAPA:26436 xref: FMA:35228 is_a: UBERON:0003696 ! implied link automatically realized ! metatarsophalangeal joint relationship: part_of UBERON:0003631 intersection_of: UBERON:0003696 {source="FMA"} ! metatarsophalangeal joint intersection_of: part_of UBERON:0003631 {source="FMA"} ! foot digit 1 [Term] id: UBERON:0007753 name: metatarsophalangeal joint of second toe comment: note the name of the structure in EMAPA is incorrect synonym: "metatarsophalangeal joint of second digit of foot" EXACT [FMA:35231] xref: EMAPA:26442 xref: FMA:35231 xref: SCTID:361869001 is_a: UBERON:0003696 ! implied link automatically realized ! metatarsophalangeal joint relationship: part_of UBERON:0003632 intersection_of: UBERON:0003696 {source="FMA"} ! metatarsophalangeal joint intersection_of: part_of UBERON:0003632 {source="FMA"} ! foot digit 2 [Term] id: UBERON:0007756 name: metatarsophalangeal joint of third toe comment: note the name of the structure in EMAPA is incorrect synonym: "metatarsophalangeal joint of third digit of foot" EXACT [FMA:35234] xref: EMAPA:26460 xref: FMA:35234 xref: SCTID:361870000 is_a: UBERON:0003696 ! implied link automatically realized ! metatarsophalangeal joint relationship: part_of UBERON:0003633 intersection_of: UBERON:0003696 {source="FMA"} ! metatarsophalangeal joint intersection_of: part_of UBERON:0003633 {source="FMA"} ! foot digit 3 [Term] id: UBERON:0007759 name: metatarsophalangeal joint of fourth toe comment: note the name of the structure in EMAPA is incorrect synonym: "metatarsophalangeal joint of fourth digit of foot" EXACT [FMA:35237] xref: EMAPA:26472 xref: FMA:35237 xref: SCTID:361871001 is_a: UBERON:0003696 ! implied link automatically realized ! metatarsophalangeal joint relationship: part_of UBERON:0003634 intersection_of: UBERON:0003696 {source="FMA"} ! metatarsophalangeal joint intersection_of: part_of UBERON:0003634 {source="FMA"} ! foot digit 4 [Term] id: UBERON:0007762 name: metatarsophalangeal joint of little toe comment: note the name of the structure in EMAPA is incorrect synonym: "metatarsophalangeal joint of fifth digit of foot" EXACT [FMA:35240] synonym: "metatarsophalangeal joint of fifth toe" EXACT [FMA:35240] xref: EMAPA:26484 xref: FMA:35240 xref: SCTID:361872008 is_a: UBERON:0003696 {source="FMA"} ! metatarsophalangeal joint relationship: part_of UBERON:0003635 {source="FMA"} ! foot digit 5 [Term] id: UBERON:0007763 name: cerebellum culmen comment: ABA splits culmen into IV and V and IV-V synonym: "culmen" BROAD [MA:0001001, NIF_GrossAnatomy:birnlex_926] synonym: "neuraxis culmen" EXACT [FMA:83886] xref: ABA:CUL xref: FMA:83886 xref: NIF_GrossAnatomy:birnlex_926 xref: SCTID:279384001 is_a: UBERON:0004070 {source="ABA"} ! cerebellum vermis lobule relationship: part_of UBERON:0003941 {source="FMA"} ! cerebellum anterior vermis [Term] id: UBERON:0007764 name: paramedian reticular nucleus def: "The paramedian reticular nucleus (in Terminologia Anatomica, or paramedian medullary reticular group in NeuroNames) sends its connections to the spinal cord in a mostly ipsilateral manner, although there is some decussation. It projects to the vermis in the anterior lobe, the pyramis and the uvula. The paramedian nucleus also projects to the contralateral PRN, the gigantocellular nucleus, and the nucleus ambiguous. The paramedian reticular formation is adjacent to the abducens (VI)nucleus in the pons and adjacent to the oculomotor nucleus(III) in the midbrain. The paramedian nucleus receives afferents mostly from the fastigial nucleus in the cerebellum and the cerebral cortex; however, the projections from the spinal cord are very sparse. The descending afferent connections come mostly from the frontal and parietal lobes; however the pontine reticular formation also sends projections to the paramedian reticular nucleus. There are also very sparse innervations from the superior colliculus. Lesions in the paramedian reticular nucleus have been shown to cause a stereotyped increase in the random patterns of motion in rats. The paramedian nuclei on either side of the brain stem have been shown to mediate the horizontal eye movements on their ipsilateral sides. It seems possible that that the random motion patterns of the above rats were caused by an inability to mediate their horizontal eye movements." [Wikipedia:Paramedian_reticular_nucleus] comment: todo - check synonym: "nucleus reticularis paramedianus" RELATED [Wikipedia:Paramedian_reticular_nucleus] synonym: "ventral paramedian reticular nucleus" EXACT [FMA:72583] xref: ABA:PMR xref: FMA:72583 is_a: UBERON:0007635 {source="FMA"} ! nucleus of medulla oblongata [Term] id: UBERON:0007767 name: dorsal premammillary nucleus xref: ABA:PMd xref: FMA:77006 is_a: UBERON:0002712 ! premammillary nucleus relationship: spatially_disjoint_from UBERON:0002035 {source="ABA"} ! medial preoptic nucleus relationship: spatially_disjoint_from UBERON:0002206 {source="ABA"} ! mammillary body relationship: spatially_disjoint_from UBERON:0002634 {source="ABA"} ! anterior nucleus of hypothalamus relationship: spatially_disjoint_from UBERON:0002706 {source="ABA"} ! posterior nucleus of hypothalamus relationship: spatially_disjoint_from UBERON:0007768 {source="ABA"} ! ventral premammillary nucleus [Term] id: UBERON:0007768 name: ventral premammillary nucleus xref: ABA:PMv xref: FMA:77007 is_a: UBERON:0002712 ! premammillary nucleus relationship: spatially_disjoint_from UBERON:0002035 {source="ABA"} ! medial preoptic nucleus relationship: spatially_disjoint_from UBERON:0002206 {source="ABA"} ! mammillary body relationship: spatially_disjoint_from UBERON:0002634 {source="ABA"} ! anterior nucleus of hypothalamus relationship: spatially_disjoint_from UBERON:0002706 {source="ABA"} ! posterior nucleus of hypothalamus relationship: spatially_disjoint_from UBERON:0007767 {source="ABA"} ! dorsal premammillary nucleus [Term] id: UBERON:0007769 name: medial preoptic region synonym: "medial preoptic area" EXACT [ABA:MPO] xref: ABA:MPO xref: MA:0000839 is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0003048 ! implied link automatically realized ! regional part of hypothalamus relationship: part_of UBERON:0001928 ! preoptic area relationship: part_of UBERON:0002272 {source="MA"} ! medial zone of hypothalamus [Term] id: UBERON:0007770 name: osphradium def: "The osphradium is the olfactory organ in certain molluscs, linked with the respiration organ. The main function of this is to test incoming water for silt and other possible food particles. It is used by all members of the Genus Conus." [BTO:0004995, Wikipedia:Osphradium] subset: organ_slim xref: BTO:0004995 is_a: UBERON:0002268 {source="BTO"} ! olfactory organ [Term] id: UBERON:0007771 name: epidermis gland subset: organ_slim synonym: "gland of epidermis" EXACT [FMA:59153] xref: FMA:59153 is_a: UBERON:0002419 ! implied link automatically realized ! skin gland is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001003 intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0001003 ! epidermis [Term] id: UBERON:0007772 name: scrotal sweat synonym: "sweat of scrotum" EXACT [FMA:73266] xref: FMA:73266 is_a: UBERON:0001089 {source="FMA"} ! sweat is_a: UBERON:0006540 ! implied link automatically realized ! exocrine gland fluid/secretion relationship: secreted_by UBERON:0007773 intersection_of: UBERON:0001089 ! sweat intersection_of: secreted_by UBERON:0007773 ! scrotal sweat gland [Term] id: UBERON:0007773 name: scrotal sweat gland subset: organ_slim xref: EMAPA:29743 is_a: UBERON:0001820 ! implied link automatically realized ! sweat gland is_a: UBERON:0005399 ! implied link automatically realized ! male reproductive gland relationship: part_of UBERON:0001300 intersection_of: UBERON:0001820 ! sweat gland intersection_of: part_of UBERON:0001300 ! scrotum [Term] id: UBERON:0007774 name: secondary dentition def: "The teeth of adulthood that either replace or are added to the complement of deciduous teeth. (Boucher's Clinical Dental Terminology, 4th ed)" [MESH:A.14.254.237] synonym: "adult dentition" RELATED [GAID:1251] synonym: "dentes permanentes" EXACT [FMA:75152, FMA:TA] synonym: "permanent dentition" EXACT [GAID:1251] synonym: "permanent teeth" EXACT [FMA:75152] synonym: "secondary dentition" RELATED [GAID:1251] synonym: "set of permanent teeth" EXACT [FMA:75152] synonym: "set of secondary teeth" EXACT [FMA:75152] xref: FMA:75152 xref: GAID:1251 xref: MESH:A.14.254.237 is_a: UBERON:0003672 {source="FMA"} ! dentition relationship: replaces UBERON:0007116 intersection_of: UBERON:0003672 ! dentition intersection_of: replaces UBERON:0007116 ! primary dentition [Term] id: UBERON:0007775 name: secondary tooth def: "Permanent teeth are the second set of teeth formed in humans[WP]." [Wikipedia:Permanent_teeth] comment: GAT in FMA synonym: "permanent tooth" EXACT [FMA:55654] xref: FMA:55654 xref: ncithesaurus:Permanent_Tooth xref: SCTID:245563006 is_a: UBERON:0001091 ! implied link automatically realized ! calcareous tooth relationship: part_of UBERON:0007774 intersection_of: UBERON:0001091 ! calcareous tooth intersection_of: part_of UBERON:0007774 ! secondary dentition [Term] id: UBERON:0007776 name: unerupted tooth def: "A normal developing tooth which has not yet perforated the oral mucosa or one that fails to erupt in the normal sequence or time interval expected for the type of tooth in a given gender, age, or population group." [MESH:A.14.254.860.715] synonym: "unerupted teeth" RELATED [GAID:1268] xref: GAID:1268 xref: MESH:A.14.254.860.715 is_a: UBERON:0001091 ! calcareous tooth [Term] id: UBERON:0007777 name: umbilical vein endothelium xref: BTO:0001416 is_a: UBERON:0001919 ! implied link automatically realized ! endothelium of vein is_a: UBERON:0001986 {source="BTO"} ! endothelium relationship: part_of UBERON:0002066 intersection_of: UBERON:0001986 ! endothelium intersection_of: part_of UBERON:0002066 ! umbilical vein relationship: part_of UBERON:0002066 {source="BTO"} ! umbilical vein [Term] id: UBERON:0007778 name: umbilical artery endothelium xref: BTO:0000857 is_a: UBERON:0001917 ! implied link automatically realized ! endothelium of artery is_a: UBERON:0001986 {source="BTO"} ! endothelium relationship: part_of UBERON:0001310 intersection_of: UBERON:0001986 ! endothelium intersection_of: part_of UBERON:0001310 ! umbilical artery relationship: part_of UBERON:0001310 {source="BTO"} ! umbilical artery [Term] id: UBERON:0007779 name: transudate def: "Body substance in liquid state, which is derived from plasma by passage through the (intact) wall of capillaries without further processing by secretory cells or glands." [FMA:12276] xref: FMA:12276 xref: GAID:1195 xref: MESH:A.12.383 xref: ncithesaurus:Transudate is_a: UBERON:0000463 {source="FMA"} ! portion of organism substance is_a: UBERON:0006314 ! bodily fluid [Term] id: UBERON:0007780 name: exudate def: "Exudates are fluids, cells, or other cellular substances that are slowly discharged from blood vessels usually from inflamed tissues." [MESH:A.12.383] synonym: "transudates and exudate" RELATED [GAID:1195] xref: MESH:A.12.383 xref: ncithesaurus:Exudate is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0007793 name: labyrinthine fluid def: "Fluids found within the osseous labyrinth (PERILYMPH) and the membranous labyrinth (ENDOLYMPH) of the inner ear. (From Gray's Anatomy, 30th American ed, p1328, 1332)" [MESH:A.12.207.571] synonym: "labyrinthine fluid" RELATED [MESH:A.12.207.571] xref: GAID:1183 xref: MESH:A.12.207.571 is_a: UBERON:0006314 {source="MESH"} ! bodily fluid [Term] id: UBERON:0007794 name: serous fluid def: "Transudate contained in a serous sac." [FMA:20932] xref: FMA:20932 is_a: UBERON:0007779 {source="FMA"} ! transudate [Term] id: UBERON:0007795 name: ascitic fluid def: "The serous fluid which accumulates in the peritoneal cavity in ascites." [MESH:A.12.207.119] comment: todo - move to pathological anatomical entity ontology synonym: "ascites" RELATED [BTO:0000091] synonym: "ascites fluid" RELATED [BTO:0000091] xref: BTO:0000091 xref: GAID:1175 xref: MESH:A.12.207.119 is_a: UBERON:0001268 ! peritoneal fluid relationship: part_of UBERON:0000916 {source="BTO"} ! abdomen [Term] id: UBERON:0007798 name: vascular system comment: in both MA and BTO, the arterial system and venous sytem are subtypes of the vascular system xref: BTO:0001085 xref: EHDAA2:0004520 xref: MA:0002718 xref: ncithesaurus:Vascular_System is_a: UBERON:0000467 ! anatomical system relationship: part_of UBERON:0004535 {source="MA"} ! cardiovascular system [Term] id: UBERON:0007799 name: mixed dentition def: "The complement of teeth in the jaws after the eruption of some of the permanent teeth but before all the deciduous teeth are absent. (Boucher's Clinical Dental Terminology, 4th ed)" [MESH:A.14.254.229] synonym: "transitional dentition" EXACT [GAID:1250] xref: GAID:1250 xref: MESH:A.14.254.229 xref: SCTID:245545006 is_a: UBERON:0003672 {source="GAID"} ! dentition [Term] id: UBERON:0007800 name: proatlas def: "a small, paired bony element (more rarely, having fused parts) located between the skull and the atlas in tuataras, crocodiles, chameleons, and many fossil reptiles; it is uncommon in turtles and mammals (hedgehog). The proatlas apparently develops from the ossified neural part of the sclerotome. Externally it resembles the neural arch of the vertebra, since it articulates anteriorly with the lateral occipital bone and posteriorly with the anterior articular process of the atlas." [http://encyclopedia2.thefreedictionary.com/Proatlas] is_a: UBERON:0002413 ! cervical vertebra relationship: anterior_to UBERON:0001092 ! first cervical vertebra [Term] id: UBERON:0007801 name: pygostyle def: "Pygostyle refers to a number of the final few caudal vertebrae fused into a single ossification, supporting the tail feathers and musculature. In modern birds, the rectrices attach to these[WP]." [Wikipedia:Pygostyle] subset: organ_slim xref: SCTID:416894001 is_a: UBERON:0001474 ! bone is_a: UBERON:0004247 ! implied link automatically realized ! back bone relationship: part_of UBERON:0001130 ! vertebral column [Term] id: UBERON:0007802 name: uropygial gland def: "A large gland at the base of a bird's tail that secretes an oil used in preening." [BTO:0001420, Wikipedia:Uropygial_gland] comment: The gland is found near the base of the tail and is shaped into two symmetric parts. The oil of each part of the gland is secreted through the surface of the skin through a grease nipple-like nub. A bird will typically transfer this oil to its feathers by rubbing its head against the oil and then around the rest of the body. Tailward areas are usually preened utilizing the beak. Not all birds have a uropygial gland. Exceptions include the emu, ostrich, and bustards. These typically find other means to stay clean and dry, such as taking a dust bath subset: organ_slim synonym: "oil gland" RELATED [BTO:0001420] xref: BTO:0001420 xref: SCTID:48626006 is_a: UBERON:0002365 {source="BTO"} ! exocrine gland relationship: secretes UBERON:0007803 intersection_of: UBERON:0002365 ! exocrine gland intersection_of: secretes UBERON:0007803 ! preen oil relationship: part_of UBERON:0002415 {source="BTO"} ! tail [Term] id: UBERON:0007803 name: preen oil is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0007804 name: sclerotic ring def: "Sclerotic rings are rings of bone found in the eyes of several groups of vertebrate animals, except for mammals and crocodilians. They can be made up of single bones or small bones together. They are believed to have a role in supporting the eye, especially in animals whose eyes are not spherical, or which live underwater. Fossil sclerotic rings are known for a variety of extinct animals, including ichthyosaurs, pterosaurs, and dinosaurs, but are often not preserved[WP]." [Wikipedia:Sclerotic_ring] is_a: UBERON:0001474 ! bone is_a: UBERON:0004766 ! implied link automatically realized ! cranial bone relationship: part_of UBERON:0001697 ! orbit [Term] id: UBERON:0007805 name: synsacrum def: "The synsacrum is a skeletal structure, mainly described in birds and dinosaurs, in which the sacrum is extended by incorporation of additional fused or partially-fused caudal or lumbar vertebrae. The ilium of the pelvis is attached to the synsacrum and, in some species, may also be fused to it. Together with the pelvis this forms a rigid structure which carries the weight of the hind end of the animal. In living and some prehistoric birds, posterior to the synsacrum there are usually only a few free caudal vertebrae, on the end of which lies the pygostyle[WP]. Complex of synostotically fused vertebrae supporting the pelvic girdle. In anurans, the synsacrum is formed by two vertebrae and the urostyle is fused to its posterior end[AAO]." [AAO:Pugener_2002, Wikipedia:Synsacrum] xref: AAO:0000740 xref: SCTID:67943001 is_a: UBERON:0001474 ! bone is_a: UBERON:0003828 ! implied link automatically realized ! abdominal segment bone is_a: UBERON:0004247 ! implied link automatically realized ! back bone is_a: UBERON:0005179 ! implied link automatically realized ! pelvis organ relationship: part_of UBERON:0006075 {source="AAO"} ! sacral region of vertebral column [Term] id: UBERON:0007806 name: connecting stalk def: "A bridge of mesoderm connecting the caudal end of the young embryo with the trophoblastic tissues; the precursor of the umbilical cord." [Medical_Dictionary:http\://medical-dictionary.thefreedictionary.com/] comment: todo - this is currently defined as a bridge of mesoderm, but in EHDAA2 is extraembryonic structure split into mesoderm and blood vessels xref: BTO:0004705 xref: ncithesaurus:Connecting_Stalk is_a: UBERON:0000478 {source="EHDAA2"} ! extraembryonic structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: develops_from UBERON:0005728 {source="EHDAA2"} ! extraembryonic mesoderm [Term] id: UBERON:0007807 name: connecting stalk blood vessels xref: EHDAA2:0000313 is_a: UBERON:0000478 {source="EHDAA2"} ! extraembryonic structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0007806 ! connecting stalk [Term] id: UBERON:0007808 name: abdominal adipose tissue def: "Adipose tissue located inside the peritoneal cavity, packed in between internal organs and torso. An excess of visceral fat is known as central obesity, or belly fat, the pot belly or beer belly effect, in which the abdomen protrudes excessively." [BTO:0004041] synonym: "abdominal fat" RELATED [BTO:0004041] synonym: "intra-abdominal fat" RELATED [BTO:0004041] synonym: "organ fat" RELATED [BTO:0004041] synonym: "visceral adipose tissue" RELATED [BTO:0004041] synonym: "visceral fat" RELATED [BTO:0004041] xref: BTO:0004041 is_a: UBERON:0001013 {source="BTO"} ! adipose tissue is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001179 {source="BTO"} ! peritoneal cavity [Term] id: UBERON:0007809 name: fascia of Camper def: "The superficial layer (fascia of Camper) is a thick superficial layer of the anterior abdominal wall. It is areolar in texture, and contains in its meshes a varying quantity of adipose tissue. It is found superficial to Scarpa's fascia. ." [Wikipedia:Fascia_of_Camper] synonym: "adipose layer of superficial fascia of abdomen" EXACT [FMA:19922] synonym: "Camper's fascia" EXACT [Wikipedia:Fascia_of_Camper] synonym: "camper's fascia" EXACT [FMA:19922] synonym: "fascia investiens intermedia abdominis" EXACT [FMA:19922, FMA:TA] synonym: "fatty layer of subcutaneous tissue of abdomen" EXACT [FMA:19922] synonym: "fatty layer of superficial fascia of abdomen" EXACT [FMA:19922] synonym: "intermediate investing fascia of abdomen" EXACT [FMA:19922] synonym: "panniculus adiposus telae subcutaneae abdominis" EXACT [FMA:19922, FMA:TA] synonym: "superficial layer of superficial fascia of abdomen" EXACT [FMA:19922] xref: FMA:19922 is_a: UBERON:0001013 {source="Wikipedia"} ! adipose tissue is_a: UBERON:0003567 ! implied link automatically realized ! abdomen connective tissue relationship: part_of UBERON:0006635 {source="FMA"} ! anterior abdominal wall [Term] id: UBERON:0007811 name: head and neck xref: EV:0100009 xref: galen:HeadAndNeck xref: MA:0000006 xref: ncithesaurus:Head_and_Neck xref: SCTID:361355005 is_a: UBERON:0000475 {source="MA"} ! organism subdivision relationship: has_part UBERON:0000033 ! head relationship: has_part UBERON:0000974 ! neck relationship: part_of UBERON:0000153 ! anterior region of body [Term] id: UBERON:0007812 name: post-anal tail subset: vertebrate_core xref: BILA:0000117 xref: EHDAA2:0003109 xref: MA:0000008 xref: XAO:0003026 xref: ZFA:0001117 is_a: UBERON:0002415 ! tail relationship: develops_from UBERON:0002533 ! tail bud [Term] id: UBERON:0007818 name: major alar cartilage def: "The greater alar cartilage (lower lateral cartilage) is a thin, flexible plate, situated immediately below the preceding, and bent upon itself in such a manner as to form the medial wall and lateral wall of the naris of its own side. The portion which forms the medial wall (crus mediale) is loosely connected with the corresponding portion of the opposite cartilage, the two forming, together with the thickened integument and subjacent tissue, the septum mobile nasi. The part which forms the lateral wall (crus laterale) is curved to correspond with the ala of the nose; it is oval and flattened, narrow behind, where it is connected with the frontal process of the maxilla by a tough fibrous membrane, in which are found three or four small cartilaginous plates, the lesser alar cartilages (cartilagines alares minores; sesamoid cartilages). Above, it is connected by fibrous tissue to the lateral cartilage and front part of the cartilage of the septum; below, it falls short of the margin of the naris, the ala being completed by fatty and fibrous tissue covered by skin. In front, the greater alar cartilages are separated by a notch which corresponds with the apex of the nose." [Wikipedia:Greater_alar_cartilage] synonym: "cartilago alaris major" EXACT [FMA:59504] synonym: "greater alar cartilage" EXACT [FMA:59504] xref: FMA:59504 xref: SCTID:361928006 is_a: UBERON:0001823 {source="FMA"} ! nasal cartilage [Term] id: UBERON:0007819 name: minor alar cartilage def: "The part which forms the lateral wall is curved to correspond with the ala of the nose; it is oval and flattened, narrow behind, where it is connected with the frontal process of the maxilla by a tough fibrous membrane, in which are found three or four small cartilaginous plates, the lesser alar cartilages." [Wikipedia:Lesser_alar_cartilages] synonym: "lesser alar cartilage" EXACT [FMA:59507] xref: FMA:59507 is_a: UBERON:0001823 {source="FMA"} ! nasal cartilage [Term] id: UBERON:0007820 name: accessory nasal cartilage xref: FMA:59510 is_a: UBERON:0001823 {source="FMA"} ! nasal cartilage [Term] id: UBERON:0007821 name: lateral nasal cartilage def: "The lateral cartilage (upper lateral cartilage) is situated below the inferior margin of the nasal bone, and is flattened, and triangular in shape.[WP]." [Wikipedia:Lateral_nasal_cartilage] xref: FMA:59511 xref: SCTID:278944009 is_a: UBERON:0001823 {source="FMA"} ! nasal cartilage [Term] id: UBERON:0007822 name: vomeronasal cartilage def: "The vomeronasal cartilage (or Jacobson's cartilage) is a narrow strip of cartilage, low on the medial wall of the nasal cavity. It lies between the cartilaginous nasal septum and the vomer. The cartilage lies below, but is not connected to, the rudimentary vomeronasal organ of Jacobson. Ludwig Levin Jacobson (1783-1843), a Danish anatomist, named this structure in 1809." [Wikipedia:Vomeronasal_cartilage] synonym: "Huschke's cartilage" EXACT [FMA:59514] synonym: "Jacobson's cartilage" EXACT [FMA:59514] xref: FMA:59514 xref: SCTID:368123006 is_a: UBERON:0001823 {source="FMA"} ! nasal cartilage [Term] id: UBERON:0007823 name: limb/fin girdle def: "Subdivision of limb or fin, which is the proximal segment, and links the limb or fin to the body[FMA,modified]." [FMA:24874] is_a: UBERON:0000914 ! organismal segment disjoint_from: UBERON:0001474 ! bone relationship: part_of UBERON:0004708 ! limb/fin [Term] id: UBERON:0007824 name: limb girdle def: "Subdivision of limb, which is the proximal segment of a limb and links the free limb to the trunk; it is demarcated by the plane of the surfaces of the glenoid and acetabular fossae from the free limb; together with the free limb, it constitutes the limb. Examples: There are only four instances, right and left pectoral girdles and right and left pelvic girdles." [FMA:24874] comment: TODO - distinguish free limb from free limb + girdle xref: FMA:24874 is_a: UBERON:0002529 {source="FMA"} ! limb segment is_a: UBERON:0007823 ! limb/fin girdle relationship: part_of UBERON:0002101 {source="FMA"} ! limb [Term] id: UBERON:0007825 name: reticular membrane of spiral organ synonym: "reticular lamina" BROAD [MA:0001194] synonym: "reticular lamina of spiral organ" EXACT [Obol:automatic] synonym: "reticular lamina of spiral organ of cochlea" EXACT [Obol:automatic] xref: FMA:77849 xref: MA:0001194 is_a: UBERON:0001967 {source="Obol"} ! reticular lamina is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0002227 {source="MA"} ! spiral organ of cochlea [Term] id: UBERON:0007826 name: peritoneal mesentery def: "A double layer composed of peritoneum that attaches the visceral organs to the body wall." [ZFIN:curator] xref: FMA:20570 xref: TAO:0005129 xref: XAO:0000138 xref: ZFA:0005129 is_a: UBERON:0002095 ! implied link automatically realized ! mesentery relationship: part_of UBERON:0002358 intersection_of: UBERON:0002095 ! mesentery intersection_of: part_of UBERON:0002358 ! peritoneum relationship: part_of UBERON:0001178 {source="FMA"} ! visceral peritoneum relationship: part_of UBERON:0002358 {source="ZFA"} ! peritoneum [Term] id: UBERON:0007827 name: external nose def: "Subdivision of face, the exterior of the nose, which consists of a root, dorsum, tip, columella, and right and left alae." [FMA:59515] xref: FMA:59515 xref: ncithesaurus:External_Nose xref: SCTID:265785009 is_a: UBERON:0003102 ! surface structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0000004 {source="FMA"} ! olfactory apparatus [Term] id: UBERON:0007828 name: girdle bone/zone synonym: "girdle bone" EXACT [MA:0000291] xref: MA:0000291 is_a: UBERON:0004375 ! implied link automatically realized ! bone of appendage relationship: part_of UBERON:0007823 intersection_of: UBERON:0001474 ! bone intersection_of: part_of UBERON:0007823 ! limb/fin girdle relationship: part_of UBERON:0002091 {source="MA"} ! appendicular skeleton [Term] id: UBERON:0007829 name: pectoral girdle bone subset: vertebrate_core xref: MA:0000292 is_a: UBERON:0007828 {source="MA"} ! girdle bone/zone relationship: part_of UBERON:0001421 intersection_of: UBERON:0001474 ! bone intersection_of: part_of UBERON:0001421 ! pectoral girdle relationship: part_of UBERON:0007831 ! skeleton of pectoral girdle [Term] id: UBERON:0007830 name: pelvic girdle bone/zone comment: typically the ilium, ischium and pubis. These can alternately be considered individual bones, or zones of a single fused bone subset: vertebrate_core synonym: "pelvic girdle bone" EXACT [MA:0000293] xref: MA:0000293 is_a: UBERON:0005913 ! zone of bone organ is_a: UBERON:0007828 {source="MA"} ! girdle bone/zone relationship: part_of UBERON:0007832 intersection_of: UBERON:0001474 ! bone intersection_of: part_of UBERON:0007832 ! skeleton of pelvic girdle [Term] id: UBERON:0007831 name: skeleton of pectoral girdle comment: todo - check EMAPA subset: vertebrate_core synonym: "pectoral girdle" BROAD [ZFA:0000407] synonym: "pectoral girdle skeleton" EXACT [FMA:24141] xref: AAO:0000422 xref: EFO:0000946 xref: EHDAA2:0001420 xref: EMAPA:18025 xref: FMA:24141 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/22/Pectoral_girdle_front_diagram.svg/200px-Pectoral_girdle_front_diagram.svg.png xref: MAT:0000181 xref: MIAA:0000181 xref: ncithesaurus:Shoulder_Girdle xref: OG:0001156 xref: TAO:0000407 xref: VAO:0000156 xref: XAO:0003063 xref: ZFA:0000407 is_a: UBERON:0000075 ! implied link automatically realized ! subdivision of skeletal system is_a: UBERON:0000477 {source="ZFA"} ! anatomical cluster relationship: part_of UBERON:0001421 intersection_of: UBERON:0000075 ! subdivision of skeletal system intersection_of: part_of UBERON:0001421 ! pectoral girdle relationship: part_of UBERON:0002091 {source="XAO"} ! appendicular skeleton relationship: part_of UBERON:0007272 {source="ZFA"} ! fore limb/fin skeleton [Term] id: UBERON:0007832 name: skeleton of pelvic girdle def: "Skeletal structure which is part of the hindlimb/fin ." [Wikipedia:Pelvic_girdle] subset: vertebrate_core synonym: "pelvic girdle" BROAD [ZFA:0000565] synonym: "pelvic girdle skeleton" EXACT [Obol:automatic] xref: AAO:0000426 xref: AAO:0000768 xref: EFO:0000947 xref: EHDAA:7149 xref: EHDAA:8324 xref: EHDAA2:0001426 xref: EMAPA:18028 xref: FMA:87592 xref: galen:PelvicGirdle xref: http://people.eku.edu/ritchisong/pectoralgirdles.gif xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Gray242.png/200px-Gray242.png xref: MAT:0000182 xref: MIAA:0000182 xref: OG:0000305 xref: TAO:0000565 xref: VAO:0000155 xref: XAO:0003064 xref: ZFA:0000565 is_a: UBERON:0000075 ! implied link automatically realized ! subdivision of skeletal system is_a: UBERON:0000477 {source="ZFA"} ! anatomical cluster relationship: part_of UBERON:0001271 intersection_of: UBERON:0000075 ! subdivision of skeletal system intersection_of: part_of UBERON:0001271 ! pelvic girdle relationship: part_of UBERON:0002091 {source="XAO"} ! appendicular skeleton relationship: part_of UBERON:0007273 {source="ZFA"} ! hind limb/fin skeleton [Term] id: UBERON:0007833 name: osseus semicircular canal comment: consider adding FMA:60186 synonym: "osseous semicircular canal" EXACT [Obol:automatic] xref: MA:0000250 is_a: UBERON:0000032 ! implied link automatically realized ! cranial structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0005913 {notes="checkme"} ! zone of bone organ is_a: UBERON:0006585 ! implied link automatically realized ! vestibular organ relationship: part_of UBERON:0001839 {source="MA"} ! bony labyrinth relationship: part_of UBERON:0001840 {source="MA"} ! semicircular canal [Term] id: UBERON:0007834 name: lumbar spinal cord ventral commissure synonym: "lumbar spinal cord anterior commissure" EXACT [NIF_GrossAnatomy:birnlex_1326] xref: NIF_GrossAnatomy:birnlex_1326 is_a: UBERON:0004170 ! implied link automatically realized ! spinal cord ventral commissure relationship: part_of UBERON:0002792 intersection_of: UBERON:0004170 ! spinal cord ventral commissure intersection_of: part_of UBERON:0002792 ! lumbar spinal cord disjoint_from: UBERON:0005842 {source="NIF_GrossAnatomy"} ! lumbar spinal cord dorsal column disjoint_from: UBERON:0005850 {source="NIF_GrossAnatomy"} ! lumbar spinal cord lateral column disjoint_from: UBERON:0005855 {source="NIF_GrossAnatomy"} ! lumbar spinal cord ventral column [Term] id: UBERON:0007835 name: sacral spinal cord ventral commissure synonym: "sacral spinal cord anterior commissure" EXACT [NIF_GrossAnatomy:birnlex_1528] xref: NIF_GrossAnatomy:birnlex_1528 is_a: UBERON:0004170 ! implied link automatically realized ! spinal cord ventral commissure relationship: part_of UBERON:0005843 intersection_of: UBERON:0004170 ! spinal cord ventral commissure intersection_of: part_of UBERON:0005843 ! sacral spinal cord disjoint_from: UBERON:0005840 {source="NIF_GrossAnatomy"} ! sacral spinal cord dorsal column disjoint_from: UBERON:0005848 {source="NIF_GrossAnatomy"} ! sacral spinal cord lateral column disjoint_from: UBERON:0005853 {source="NIF_GrossAnatomy"} ! sacral spinal cord ventral column [Term] id: UBERON:0007836 name: cervical spinal cord ventral commissure synonym: "cervical spinal cord anterior commissure" EXACT [NIF_GrossAnatomy:birnlex_1552] xref: NIF_GrossAnatomy:birnlex_1552 is_a: UBERON:0004170 ! implied link automatically realized ! spinal cord ventral commissure relationship: part_of UBERON:0002726 intersection_of: UBERON:0004170 ! spinal cord ventral commissure intersection_of: part_of UBERON:0002726 ! cervical spinal cord disjoint_from: UBERON:0005841 {source="NIF_GrossAnatomy"} ! cervical spinal cord dorsal column disjoint_from: UBERON:0005849 {source="NIF_GrossAnatomy"} ! cervical spinal cord lateral column disjoint_from: UBERON:0005854 {source="NIF_GrossAnatomy"} ! cervical spinal cord ventral column [Term] id: UBERON:0007837 name: thoracic spinal cord ventral commissure synonym: "thoracic spinal cord anterior commissure" EXACT [NIF_GrossAnatomy:birnlex_1556] xref: NIF_GrossAnatomy:birnlex_1556 is_a: UBERON:0004170 ! implied link automatically realized ! spinal cord ventral commissure relationship: part_of UBERON:0003038 intersection_of: UBERON:0004170 ! spinal cord ventral commissure intersection_of: part_of UBERON:0003038 ! thoracic spinal cord disjoint_from: UBERON:0005839 {source="NIF_GrossAnatomy"} ! thoracic spinal cord dorsal column disjoint_from: UBERON:0005847 {source="NIF_GrossAnatomy"} ! thoracic spinal cord lateral column disjoint_from: UBERON:0005852 {source="NIF_GrossAnatomy"} ! thoracic spinal cord ventral column [Term] id: UBERON:0007838 name: spinal cord white commissure synonym: "white commissure of spinal cord" EXACT [FMA:77033] xref: FMA:77033 xref: SCTID:423957000 is_a: UBERON:0001020 {source="FMA"} ! commissure is_a: UBERON:0008882 ! implied link automatically realized ! spinal cord commissure relationship: part_of UBERON:0002240 ! spinal cord [Term] id: UBERON:0007840 name: spinal cord dorsal white commissure synonym: "commissura alba posterior medullae spinalis" EXACT [FMA:77034, FMA:TA] synonym: "dorsal white commissure of spinal cord" EXACT [FMA:77034] synonym: "posterior white commissure of spinal cord" EXACT [FMA:77034] xref: FMA:77034 xref: SCTID:424400007 is_a: UBERON:0007838 {source="FMA"} ! spinal cord white commissure [Term] id: UBERON:0007841 name: furcula def: "a forked bone found in birds, formed by the fusion of the two clavicles. In birds, its function is the strengthening of the thoracic skeleton to withstand the rigors of flight." [Wikipedia:Furcula] comment: The following theropods have been found to have furculae: dromaeosaurids (including a new North American species of Velociraptor), Oviraptorids, Tyrannosaurids, Troodontids, Coelophysids and Allosauroids. synonym: "fused clavicle" RELATED [] synonym: "wishbone" RELATED [Wikipedia:Furcula] is_a: UBERON:0001474 ! bone is_a: UBERON:0008962 ! implied link automatically realized ! forelimb bone relationship: has_fused_element UBERON:0008255 ! right clavicle relationship: has_fused_element UBERON:0008256 ! left clavicle relationship: part_of UBERON:0001440 ! forelimb skeleton [Term] id: UBERON:0007842 name: membrane bone xref: EHDAA2:0003085 xref: VAO:0000023 xref: XAO:0004014 xref: ZFA:0001636 is_a: UBERON:0004765 {source="VAO"} ! skeletal element [Term] id: UBERON:0007843 name: uncinate process of ribs def: "Extensions of bone that in birds project caudally from the vertical segment of each rib[WP]. Posteriorly directed process (occasionally directed anteriorly) usually associated with the rib (sometimes with the transverse process) of the third vertebra; they provide the origin of the mm serratus superior, medius, and inferior[AAO]. " [AAO:Pugener_2002, Wikipedia:Uncinate_processes_of_ribs] comment: WP: Although bony uncinate processes are unique to birds, cartilaginous uncinate processes are present in crocodiles. The uncinate process has also been reported in Sphenodon, Caudipteryx, oviraptorids, Confuciusornis and Chaoyangia however it does not occur in Archaeopteryx synonym: "uncinate process" BROAD [AAO:0000741] xref: AAO:0000741 xref: SCTID:306373001 is_a: UBERON:0005055 ! implied link automatically realized ! zone of long bone is_a: UBERON:0005174 ! implied link automatically realized ! back organ is_a: UBERON:0005175 ! implied link automatically realized ! chest organ is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0002228 {source="AAO"} ! rib [Term] id: UBERON:0007844 name: cartilaginous element def: "Skeletal element that is composed of cartilage tissue and may be permanent or transient." [VAO:curator] comment: todo - add subtypes subset: organ_slim synonym: "cartilage" RELATED [VAO:0000000] synonym: "cartilage organ" EXACT [FMA:55107] synonym: "chondrogenic element" EXACT [VAO:0000000] xref: FMA:55107 xref: VAO:0000000 xref: XAO:0004013 is_a: UBERON:0004765 {source="VAO"} ! skeletal element relationship: develops_from UBERON:0005863 {source="VAO"} ! cartilaginous condensation relationship: has_part UBERON:0002418 {source="VAO"} ! cartilage tissue [Term] id: UBERON:0007845 name: regular connective tissue def: "Connective tissue, which consists of fibroblasts, the intercellular matrix of which contains a regular network of collagen and elastic fiber bundles. Examples: bone (tissue), cartilage (tissue), dense regular collagenous tissue." [FMA:20103] xref: FMA:20103 is_a: UBERON:0002384 {source="FMA"} ! connective tissue [Term] id: UBERON:0007846 name: dense regular collagenous tissue def: "Regular connective tissue, the intercellular matrix of which consists predominantly of collagen fiber bundles arranged in parallel arrays[FMA]. Connective tissue that is dominated by collagen fibres organized into a definitive pattern (e.g., parallel to one another), with comparatively fewer cells (mostly fibroblasts)[VAP]" [FMA:64781, VAO:0000050] synonym: "dense fibrous connective tissue" EXACT [FMA:64781] synonym: "dense regular collagenous connective tissue" EXACT [FMA:64781] synonym: "dense regular connective tissue" EXACT [FMA:64781, VAO:0000050] synonym: "typus regularis (textus connectivus collagenosus compactus)" EXACT [FMA:64781] xref: FMA:64781 xref: ncithesaurus:Regular_Dense_Connective_Tissue xref: SCTID:22560007 xref: VAO:0000050 xref: XAO:0004030 is_a: UBERON:0007845 {source="FMA"} ! regular connective tissue [Term] id: UBERON:0007862 name: perichordal tissue def: "Fibrous connective tissue that surrounds the notochord; includes a layer of elastin." [VAO:curator] comment: Derived from cells surrounding the notochord (possibly the slerotome). Disparate from (not derived from) notochord. synonym: "notochord" RELATED [VAO:curator] synonym: "perichordal connective tissue" EXACT [ZFA:0001633] synonym: "perichordal sheath" EXACT [VAO:curator] synonym: "perichordal sheath tissue" EXACT [VAO:curator] xref: AAO:0010446 xref: VAO:0000054 xref: XAO:0004050 xref: ZFA:0001633 is_a: UBERON:0002384 {source="VAO"} ! connective tissue is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue relationship: part_of UBERON:0002328 {source="VAO"} ! notochord [Term] id: UBERON:0007914 name: head or neck bone xref: MA:0000569 is_a: UBERON:0001474 {source="MA"} ! bone relationship: part_of UBERON:0007811 intersection_of: UBERON:0001474 ! bone intersection_of: part_of UBERON:0007811 ! head and neck relationship: part_of UBERON:0007811 {source="MA"} ! head and neck [Term] id: UBERON:0007958 name: central carpal bone def: "A small bone occasionally found at the dorsal aspect of the wrist between the scaphoid, capitate, and trapezoid; it is developed as an independent cartilage in early foetal life but usually becomes fused with the scaphoid; it occurs normally in most monkeys." [http://www.medilexicon.com/medicaldictionary.php?t=63518] comment: FMA xref is a 'general anatomical term' synonym: "central bone" BROAD [http://www.medilexicon.com/medicaldictionary.php?t=63518] synonym: "centrale" RELATED [MA:0001344] synonym: "os carpi centrale" RELATED [http://epub.ub.uni-muenchen.de/8251/1/8251.pdf] synonym: "os centrale" RELATED [] synonym: "os centrale carpi" RELATED [] xref: FMA:77232 xref: MA:0001344 xref: SCTID:26987000 is_a: UBERON:0001435 {source="MA"} ! carpal bone [Term] id: UBERON:0007959 name: falciform carpal bone comment: todo - check relationship to radial sesamoid synonym: "os falciform" EXACT [UBERON:cjm] synonym: "os falciforme" EXACT [UBERON:cjm] xref: MA:0001345 is_a: UBERON:0001435 {source="MA"} ! carpal bone [Term] id: UBERON:0007960 name: scapholunate def: "The combined scaphoid and lunate bones." [UBERON:cjm] synonym: "intermedioradial carpal bone" RELATED [MA:0001346] synonym: "scapholunate bone" EXACT [UBERON:cjm] synonym: "scapholunatum" RELATED [UBERON:cjm] xref: MA:0001346 is_a: UBERON:0001480 {source="MA"} ! proximal carpal bone relationship: has_fused_element UBERON:0001427 ! scaphoid relationship: has_fused_element UBERON:0001428 ! lunate [Term] id: UBERON:0007990 name: proximal sesamoid bone of foot xref: MA:0001376 is_a: UBERON:0001479 {source="MA"} ! sesamoid bone is_a: UBERON:0004248 {source="MA"} ! foot digit bone is_a: UBERON:0008000 ! implied link automatically realized ! sesamoid bone of foot [Term] id: UBERON:0007991 name: proximal sesamoid bone of hand xref: MA:0001377 is_a: UBERON:0001479 {source="MA"} ! sesamoid bone is_a: UBERON:0004249 {source="MA"} ! hand digit bone is_a: UBERON:0007997 ! implied link automatically realized ! sesamoid bone of hand [Term] id: UBERON:0007993 name: ulnar sesamoid bone xref: MA:0001379 is_a: UBERON:0001479 {source="MA"} ! sesamoid bone is_a: UBERON:0003466 {source="MA"} ! lower arm bone [Term] id: UBERON:0007997 name: sesamoid bone of hand xref: FMA:42353 xref: SCTID:368448000 is_a: UBERON:0001479 {source="FMA"} ! sesamoid bone is_a: UBERON:0005897 ! implied link automatically realized ! hand bone relationship: part_of UBERON:0002398 intersection_of: UBERON:0001479 ! sesamoid bone intersection_of: part_of UBERON:0002398 ! hand relationship: part_of UBERON:0001442 ! skeleton of hand [Term] id: UBERON:0008000 name: sesamoid bone of foot xref: FMA:45096 xref: SCTID:244675002 is_a: UBERON:0001479 {source="FMA"} ! sesamoid bone is_a: UBERON:0005899 ! implied link automatically realized ! foot bone relationship: part_of UBERON:0002387 intersection_of: UBERON:0001479 ! sesamoid bone intersection_of: part_of UBERON:0002387 ! foot relationship: part_of UBERON:0001445 {source="FMA"} ! skeleton of foot [Term] id: UBERON:0008001 name: irregular bone def: "The irregular bones are bones which, from their peculiar form, cannot be grouped as long bone, short bone, flat bone or sesamoid bone. Irregular bones serve various purposes in the body, such as protection of nervous tissue, affording multiple anchor points for skeletal muscle attachment (as with the sacrum), and maintaining pharynx and trachea support, and tongue attachment (such as the hyoid bone). They consist of cancellous tissue enclosed within a thin layer of compact bone. The irregular bones are: the vertebrC&, sacrum, coccyx, temporal, sphenoid, ethmoid, zygomatic, maxilla, mandible, palatine, inferior nasal concha, and hyoid." [Wikipedia:Irregular_bone] xref: FMA:7477 xref: ncithesaurus:Irregular_Bone xref: SCTID:421560006 is_a: UBERON:0001474 {source="FMA"} ! bone [Term] id: UBERON:0008114 name: joint of girdle synonym: "girdle join" EXACT [OBOL:automatic] xref: MA:0001505 is_a: UBERON:0000982 {source="MA"} ! skeletal joint relationship: part_of UBERON:0007823 intersection_of: UBERON:0000982 ! skeletal joint intersection_of: part_of UBERON:0007823 ! limb/fin girdle [Term] id: UBERON:0008115 name: surface of cartilage synonym: "cartilage surface" EXACT [FMA:76668] xref: FMA:76668 is_a: UBERON:0006984 ! anatomical surface [Term] id: UBERON:0008124 name: joint articular surface comment: note that FMA has multiple "Articular surface of X" classes, with no way to group them xref: MA:0001518 is_a: UBERON:0008115 ! surface of cartilage relationship: part_of UBERON:0002217 {source="MA"} ! synovial joint [Term] id: UBERON:0008187 name: hypertrophic cartilage zone comment: see also VAO:0000098 xref: MA:0002849 is_a: UBERON:0002418 ! cartilage tissue relationship: part_of UBERON:0004763 {source="MA"} ! endochondral bone tissue [Term] id: UBERON:0008188 name: tendon of biceps brachii synonym: "biceps brachii tendon" EXACT [FMA:38152] xref: EMAPA:25053 xref: FMA:38152 is_a: UBERON:0000043 {source="FMA"} ! tendon relationship: attached_to UBERON:0001507 intersection_of: UBERON:0000043 ! tendon intersection_of: attached_to UBERON:0001507 ! biceps brachii [Term] id: UBERON:0008192 name: tendon of triceps brachii synonym: "triceps brachii tendon" EXACT [FMA:38380] xref: FMA:38380 is_a: UBERON:0000043 {source="FMA"} ! tendon relationship: attached_to UBERON:0001509 intersection_of: UBERON:0000043 ! tendon intersection_of: attached_to UBERON:0001509 ! triceps brachii [Term] id: UBERON:0008193 name: pneumatized bone def: "a bone that is hollow or contains many air cells, such as the mastoid process of the temporal bone[TMD]. Skeletal pneumaticity is the presence of air spaces within bones. Skeletal pneumaticity exists only in synapsids and archosaurs. It is generally produced during development by excavation of bone by pneumatic diverticula (air sacs) from an air-filled space such as the lungs or nasal cavity. Pneumatization is highly variable between individuals, and bones not normally pneumatized can become pneumatized in pathological development. Pneumatization occurs in the skulls of mammals, crocodilians and birds among extant groups, as well as extinct archosaurs including the dinosaurs and pterosaurs. Pneumatic spaces include the paranasal sinuses and some of the mastoid cells[WP]." [http://www.medilexicon.com/medicaldictionary.php?t=11303, Wikipedia:Skeletal_pneumaticity] comment: editor note: subclasses of this should be checked for taxonomic consistency synonym: "hollow bone" RELATED [] synonym: "os pneumaticum" EXACT [FMA:7478] synonym: "pneumatic bone" EXACT [FMA:7478] xref: FMA:7478 xref: galen:PneumaticBone xref: SCTID:333008005 is_a: UBERON:0008001 {source="FMA"} ! irregular bone [Term] id: UBERON:0008194 name: tibiotarsus def: "The tibiotarsus is the large bone between the femur and the tarsometatarsus in the leg of a bird. It is the fusion of the proximal part of the tarsus with the tibia. A similar structure also occurred in the Mesozoic Heterodontosauridae. These small ornithischian dinosaurs were unrelated to birds and the similarity of their foot bones is best explained by convergent evolution." [Wikipedia:Tibiotarsus] is_a: UBERON:0001474 ! bone is_a: UBERON:0003464 ! implied link automatically realized ! hindlimb bone relationship: part_of UBERON:0001441 ! hindlimb skeleton [Term] id: UBERON:0008195 name: tarsometatarsus def: "The tarsometatarsus is a bone that is found in the lower leg of certain tetrapods, namely birds. It is formed from the fusion of several bones found in other types of animals, and homologous to the mammalian tarsal (ankle) and metatarsal (foot) bones. Despite this, the tarsometatarsus of birds is often referred to as just the tarsus or metatarsus." [Wikipedia:Tibiotarsus] is_a: UBERON:0001474 ! bone is_a: UBERON:0005899 ! implied link automatically realized ! foot bone relationship: part_of UBERON:0001445 ! skeleton of foot [Term] id: UBERON:0008196 name: muscle of pectoral girdle synonym: "muscle of shoulder girdle" EXACT [FMA:37347] synonym: "pectoral girdle muscle" EXACT [FMA:37347] xref: FMA:37347 is_a: UBERON:0003662 {source="FMA"} ! forelimb muscle [Term] id: UBERON:0008198 name: nail plate def: "The nail plate is the hard and translucent portion of the nail, composed of keratin." [https://github.com/cmungall/uberon/issues/20, https://sourceforge.net/tracker/?func=detail&aid=3307500&group_id=36855&atid=440764, Wikipedia:Nail_plate] xref: MA:0002708 xref: ncithesaurus:Nail_Plate xref: SCTID:372177002 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001705 {source="MA"} ! nail [Term] id: UBERON:0008199 name: chin def: "In the human anatomy, the chin is the lowermost part of the face. It is formed by the lower front of the mandible. People show a wide variety of chin structures. See Cleft chin. The chin developed as a point of muscular attachment facilitating minute movements of the lips associated with speech. In human evolution, the chin is a cladistic apomorphy, partially defining anatomically modern Humans as distinct from archaic forms." [Wikipedia:Chin] synonym: "chin %28anatomy%29" RELATED [Wikipedia:Chin] synonym: "chins" RELATED [Wikipedia:Chin] synonym: "mental part of face" EXACT [FMA:46495] synonym: "mental region" EXACT [FMA:46495] synonym: "mental region of face" EXACT [FMA:46495] synonym: "regio mentalis" EXACT [FMA:46495, FMA:TA] xref: FMA:46495 xref: GAID:67 xref: galen:Chin xref: MESH:A.01.456.505.259 xref: SCTID:362632004 is_a: UBERON:0003102 ! surface structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001456 {source="MESH"} ! face relationship: part_of UBERON:0001710 {source="MESH"} ! lower jaw [Term] id: UBERON:0008200 name: forehead def: "The part of the face above the eyes[MESH]. In human anatomy, the forehead is the fore part of the head. It is, formally, an area of the head bounded by three features, two of the skull and one of the scalp. The top of the forehead is marked by the hairline, the edge of the area where hair on the scalp grows. The bottom of the forehead is marked by the supraorbital ridge, the bone feature of the skull above the eyes. The two sides of the forehead are marked by the temporal ridge, a bone feature that links the supraorbital ridge to the coronal suture line and beyond[WP]." [MESH:A.01.456.505.580, Wikipedia:Forehead] synonym: "fore head" RELATED [Wikipedia:Forehead] xref: FMA:63864 xref: GAID:74 xref: galen:Forehead xref: MESH:A.01.456.505.580 xref: SCTID:362614004 is_a: UBERON:0003102 ! surface structure relationship: part_of UBERON:0001456 {source="FMA"} ! face [Term] id: UBERON:0008201 name: scute def: "A bony external plate or scale, as on the shell of a turtle, the skin of crocodilians, the feet of some birds. Scutes are similar to scales and serve the same function. Unlike the scales of fish and snakes, which are formed from the epidermis, scutes are formed in the lower vascular layer of the skin and the epidermal element is only the top surface. Forming in the living dermis, the scutes produce a horny outer layer, that is superficially similar to that of scales. Scutes will usually not overlap as snake scales (but see the pangolin). The outer keratin layer is shed piecemeal, and not in one continuous layer of skin as seen in snakes or lizards. The dermal base may contain bone and produce dermal armour. Scutes with a bony base are properly called osteoderms. Dermal scutes are also found in the feet of birds and tails of some mammals, and are believed to be the primitive form of dermal armour in reptiles. The term is also used to describe the heavy armour of the armadillo and the extinct glyptodon, and is occasionally used as an alternative to scales in describing snakes or certain fishes, such as sturgeons[WP]." [Wikipedia:Scute] synonym: "scuta" EXACT PLURAL [Wikipedia:Scute] synonym: "scutae" EXACT PLURAL [Wikipedia:Scute] synonym: "scutum" EXACT [Wikipedia:Scute] is_a: UBERON:0003102 ! surface structure [Term] id: UBERON:0008202 name: bone of hip region comment: in MA, this includes the femur. i.e. pelvic girdle bone or femur xref: MA:0000655 is_a: UBERON:0003464 {source="MA"} ! hindlimb bone is_a: UBERON:0007828 ! implied link automatically realized ! girdle bone/zone relationship: part_of UBERON:0001464 {source="MA"} ! hip [Term] id: UBERON:0008203 name: pelvic cavity def: "The pelvic cavity is a body cavity that is bounded by the bones of the pelvis and which primarily contains reproductive organs, the urinary bladder, and the rectum. The pelvis is a marvel of physiology and is deceptively complex. It contains the lower urinary tract, reproductive system, lower digestive tract, major arteries and veins, muscle systems, nerve systems and bone systems. They all have to work together in a little crowded \"house\". It can be affected by many different diseases and by many drugs in many different ways. One part may impact upon another, for example constipation may overload the rectum and compress the urinary bladder, or childbirth might damage the pudendal nerves and later lead to anal weakness." [Wikipedia:Pelvic_cavity] synonym: "space of pelvic compartment" EXACT [FMA:9738] xref: FMA:9738 xref: SCTID:281903009 is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0002355 {source="FMA"} ! pelvis relationship: part_of UBERON:0003684 {source="FMA"} ! abdominal cavity [Term] id: UBERON:0008229 name: head and neck musculature synonym: "head or neck muscle" RELATED [MA:0000571] xref: MA:0000571 is_a: UBERON:0001015 {source="MA"} ! musculature relationship: part_of UBERON:0007811 intersection_of: UBERON:0001015 ! musculature intersection_of: part_of UBERON:0007811 ! head and neck relationship: part_of UBERON:0007811 {source="MA"} ! head and neck [Term] id: UBERON:0008230 name: tibialis def: "Either of two muscles of the calf of the leg." [Fast_Health_Medical_Dictionary:http\://www.fasthealth.com/dictionary/] xref: BTO:0000864 xref: MA:0002425 xref: ncithesaurus:Tibialis is_a: UBERON:0000366 {source="BTO"} ! flexor muscle is_a: UBERON:0004256 ! implied link automatically realized ! hindlimb zeugopod muscle relationship: part_of UBERON:0003823 ! hindlimb zeugopod [Term] id: UBERON:0008231 name: upper back def: "Subdivision of thorax, which in humans is the posterior part of the thorax and is demarcated from the chest by the external surface of the posterolateral part of the rib cage and the anterior surface of the thoracic vertebral column; together with the chest, it constitutes the thorax." [FMA:24217] synonym: "dorsum of thorax" EXACT [FMA:24217] synonym: "posterior part of thorax" EXACT [FMA:24217] synonym: "thoracic back" EXACT [FMA:24217] synonym: "thoracic part of back" EXACT [FMA:24217] xref: FMA:24217 xref: MA:0000028 xref: SCTID:362666008 is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0000915 {source="MA"} ! thoracic segment of trunk relationship: part_of UBERON:0001137 ! back [Term] id: UBERON:0008242 name: lower back muscle xref: MA:0000502 xref: SCTID:317178000 is_a: UBERON:0002324 ! implied link automatically realized ! muscle of back is_a: UBERON:0003833 {source="MA"} ! abdominal segment muscle relationship: part_of UBERON:0005462 intersection_of: UBERON:0002324 ! muscle of back intersection_of: part_of UBERON:0005462 ! lower back relationship: part_of UBERON:0005462 {source="MA"} ! lower back [Term] id: UBERON:0008243 name: upper back muscle xref: MA:0000508 xref: SCTID:305071003 is_a: UBERON:0002324 ! implied link automatically realized ! muscle of back is_a: UBERON:0003830 {source="MA"} ! thoracic segment muscle relationship: part_of UBERON:0008231 intersection_of: UBERON:0002324 ! muscle of back intersection_of: part_of UBERON:0008231 ! upper back relationship: part_of UBERON:0008231 {source="MA"} ! upper back [Term] id: UBERON:0008245 name: pennate muscle def: "A pennate muscle (also called a penniform muscle) is a muscle with fascicles that attach obliquely (in a slanting position) to its tendon. These types of muscles generally allow better stabilization and force production but less flexibility. Individual muscle fibers are formed into bundles of fasciculi and these bundles of fasciculi are formed into bundles of fascicles which compose the entire muscle itself. In a pennate muscle, the fascicles will form an angle with its central tendon. If all the fascicles are on the same side of the tendon, the pennate muscle is called unipennate. Examples of this include certain muscles in the hand. If there are fascicles on both sides of the central tendon, the pennate muscle is called bipennate. The rectus femoris, a large muscle in the quadriceps, is typical. If the central tendon branches within a pennate muscle, the muscle is called multipennate, as seen in the deltoid muscle in the shoulder." [Wikipedia:Pennate_muscle] comment: note the FMA class does not denote a muscle organ. todo: add child classes xref: FMA:74993 xref: Wikipedia:Pennate_muscle is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0008246 name: pyloric stomach def: "The mouth of a starfish is located on the underside of the body, and opens through a short esophagus into firstly a cardiac stomach, and then, a second, pyloric stomach. Each arm also contains two pyloric caeca, long hollow tubes branching outwards from the pyloric stomach. Each pyloric caecum is lined by a series of digestive glands, which secrete digestive enzymes and absorb nutrients from the food. A short intestine runs from the upper surface of the pyloric stomach to open at an anus in the center of the upper body" [Wikipedia:Starfish] subset: organ_slim xref: BTO:0002121 is_a: UBERON:0002075 ! viscus relationship: part_of UBERON:0001007 ! digestive system [Term] id: UBERON:0008247 name: tube foot def: "One of the numerous external, fluid-filled muscular tubes of echinoderms, such as the starfish or sea urchin, serving as organs of locomotion, food handling, and respiration[BTO]. Tube feet consist of two parts: ampulla and podia. Ampulla contain both circular muscles and longitudinal muscle, whereas the podia contain the latter only. Thus the podia use suction to attach to the substratum[WP]." [BTO:0001919, Wikipedia:Tube_feet] synonym: "tube feet" RELATED PLURAL [Wikipedia:Tube_feet] xref: BTO:0001919 is_a: UBERON:0000026 ! appendage [Term] id: UBERON:0008248 name: pyloric cecum def: "The pyloric ceca (or digestive glands) and the cardiac stomach produce digestive enzymes in starfishes. Digested material is absorbed through the pyloric ceca for transport to the rest of the body. Each pyloric cecum extends the length of each arm." [BTO:0002120] synonym: "pyloric caecum" EXACT [BTO:0002120] xref: BTO:0002120 is_a: UBERON:0002075 ! viscus relationship: part_of UBERON:0001007 ! digestive system [Term] id: UBERON:0008250 name: cardiac stomach def: "In starfishes the cardiac stomach is connected to a pyloric stomach which is located above it. Food can be brought into the stomach through the mouth or, in many species, the cardiac stomach can be extended out through the mouth to digest food outside the body. Suspension-feeding starfish use their tube feet to pass food to the mouth." [BTO:0002122] subset: organ_slim xref: BTO:0002122 is_a: UBERON:0002075 ! viscus [Term] id: UBERON:0008251 name: water vascular system def: "The water vascular system is a hydraulic system used by echinoderms, such as sea stars and sea urchins, for locomotion, food and waste transportation, and respiration.[1] The system is composed of canals connecting numerous tube feet. Echinoderms move by alternately contracting muscles that force water into the tube feet, causing them to extend and push against the ground, then relaxing to allow the feet to retract.[WP]." [Wikipedia:Water_vascular_system] xref: BTO:0002125 is_a: UBERON:0000467 ! anatomical system [Term] id: UBERON:0008252 name: tube foot ampulla def: "The constant contraction of ampulla (to extend and retract the tube feet) helps to move a starfish. The ampullae are teeth like structures surrounding the radial canal." [BTO:0002124] xref: BTO:0002124 is_a: UBERON:0003913 ! tooth-like structure relationship: part_of UBERON:0008247 ! tube foot relationship: part_of UBERON:0008251 {source="BTO"} ! water vascular system [Term] id: UBERON:0008253 name: Aristotle's lantern def: "Within the mouth of a sea urchin is an elaborate five-sided jaw structure called Aristotles lantern that can be partially extruded from the mouth. It is able to grind up calcareous exoskeletons of plants and animals." [BTO:0001923, Wikipedia:Aristotle's_lantern#Digestion] synonym: "Aristotles lantern" EXACT [BTO:0001923] xref: BTO:0001923 xref: http://animaldiversity.ummz.umich.edu/site/resources/biodidac/echino001B.gif/medium.jpg is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0000165 {source="BTO"} ! mouth [Term] id: UBERON:0008254 name: styliform cartilage def: "shaft of skeletal tissue that articulates with the lateral border of the carpus." [ISBN-10:0226313379] is_a: UBERON:0007844 ! cartilaginous element relationship: homologous_to UBERON:0001429 {comment="checkme"} ! pisiform relationship: part_of UBERON:0001440 ! forelimb skeleton [Term] id: UBERON:0008255 name: right clavicle xref: FMA:13322 is_a: UBERON:0001105 {source="FMA"} ! clavicle relationship: part_of UBERON:0004532 intersection_of: UBERON:0001105 ! clavicle intersection_of: part_of UBERON:0004532 ! right side of organism [Term] id: UBERON:0008256 name: left clavicle xref: FMA:13323 is_a: UBERON:0001105 {source="FMA"} ! clavicle relationship: part_of UBERON:0004531 intersection_of: UBERON:0001105 ! clavicle intersection_of: part_of UBERON:0004531 ! left side of organism [Term] id: UBERON:0008257 name: radial sesamoid def: "In the giant panda, a large digitlike preaxial element that articulates with the scapholunatum and the medial border of the first metacarpal." [ISBN-10:0226313379] synonym: "os sesamoideum radiale" EXACT [ISBN-10:0226313379] is_a: UBERON:0001435 ! implied link automatically realized ! carpal bone is_a: UBERON:0001479 ! sesamoid bone is_a: UBERON:0007997 ! implied link automatically realized ! sesamoid bone of hand relationship: part_of UBERON:0004452 ! carpus [Term] id: UBERON:0008258 name: oral surface synonym: "actinal side" EXACT [] synonym: "actinal surface" EXACT [] is_a: UBERON:0000475 ! organism subdivision [Term] id: UBERON:0008259 name: aboral surface synonym: "abactinal side" EXACT [] synonym: "abactinal surface" EXACT [] is_a: UBERON:0000475 ! organism subdivision [Term] id: UBERON:0008260 name: spine appendage def: "a hard, thorny or needle-like structure which occurs on various animals. Animals such as porcupines and sea urchins grow spines as a self-defense mechanism. Spines are often formed of keratin. Other animals with spines are hedgehogs, spiny mice and at least two ornithischian dinosaurs." [Wikipedia:Spine_(zoology)] synonym: "spine" BROAD [] is_a: UBERON:0000026 ! appendage [Term] id: UBERON:0008261 name: pedicellaria def: "a small wrench or claw-shaped structure commonly found on Echinoderms, particularly in sea stars (class Asteroidea) and sea urchins (class Echinoidea). Pedicellariae are poorly understood but in some taxa, they are thought to keep the body surface clear of algae, encrusting organisms, and other debris in conjunction with the ciliated epidermis present in all echinoderms. Pedicellariae in some taxa, such as the deep-sea Brisingida, and the Antarctic Labidiaster are known to function in food capture. In forcipulate sea stars, each pedicellaria is typically composed three forceps-like valves. Other asteroids can have pedicellariae composed of only two components. In some asteroid sea stars pedicellariae are present around the base of a spine or on the surface of the animal's body. In other sea stars, they are present in pits on the abactinal, marginal, or actinal surface; oftentimes on the adambulacral plate adjacent to the tube foot furrow." [Wikipedia:Pedicellaria] synonym: "pedicellariae" EXACT PLURAL [Wikipedia:Pedicellaria] is_a: UBERON:0000026 ! appendage [Term] id: UBERON:0008262 name: ambulacral area is_a: UBERON:0000475 ! organism subdivision [Term] id: UBERON:0008263 name: inter-ambulacral area is_a: UBERON:0000475 ! organism subdivision [Term] id: UBERON:0008264 name: echinopluteus larval stage def: "Larval stage in echinoderms characterized by a planktonic and feeding larval form that possesses limb-like outgrowths bearing ciliated bands." [http://www.encyclopedia.com/doc/1O8-echinopluteuslarva.html] synonym: "pluteus larval stage" EXACT [] is_a: UBERON:0000069 ! larval stage [Term] id: UBERON:0008265 name: echinopluteus larva def: "A planktonic and feeding larval form that possesses limb-like outgrowths bearing ciliated bands." [http://www.encyclopedia.com/doc/1O8-echinopluteuslarva.html] synonym: "pluteus larva" EXACT [] is_a: UBERON:0002548 ! implied link automatically realized ! larva relationship: existence_starts_and_ends_during UBERON:0008264 intersection_of: UBERON:0000468 ! multi-cellular organism intersection_of: existence_starts_and_ends_during UBERON:0008264 ! echinopluteus larval stage [Term] id: UBERON:0008266 name: periodontal ligament def: "The fibrous connective tissue that surrounds the root of a tooth, separating it from and attaching it to the alveolar bone. It extends from the base of the gingival mucosa to the fundus of the bony socket, and its main function is to hold the tooth in its socket[BTO]. It consist of cells, extracellular compartment of fibers. The cells are fibroblast, epithelial, undifferentiated mesenchymal cells, bone and cementum cells. The extracellular compartment consists of collagen fibers bundles embedded in ground substance. The PDL substance has been estimated to be 70% water and is thought to have a significant effect on the tooth's ability to withstand stress loads[WP]." [BTO:0001020, https://github.com/cmungall/uberon/issues/21, Wikipedia:Periodontal_ligament] comment: note FMA treats periodontium and periodontal ligament as the same synonym: "alveolar periosteum" RELATED [BTO:0001020] synonym: "alveolodental ligament" RELATED [BTO:0001020] synonym: "alveolodental membrane" RELATED [BTO:0001020] synonym: "desmodontium" RELATED [BTO:0001020] synonym: "odontoperiosteum" RELATED [BTO:0001020] synonym: "paradentium" RELATED [BTO:0001020] synonym: "PDL" RELATED [Wikipedia:Periodontal_ligament] synonym: "peridental membrane" RELATED [BTO:0001020] synonym: "peridontal membrane" RELATED [BTO:0001020] synonym: "peridontium" RELATED [BTO:0001020] xref: BTO:0001020 xref: GAID:1259 xref: MA:0002467 xref: SCTID:245775004 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0003566 ! implied link automatically realized ! head connective tissue is_a: UBERON:0008846 {source="FMA-moved"} ! skeletal ligament relationship: part_of UBERON:0001758 intersection_of: UBERON:0000211 ! ligament intersection_of: part_of UBERON:0001758 ! periodontium relationship: part_of UBERON:0001758 {source="BTO"} ! periodontium [Term] id: UBERON:0008267 name: left supracardinal vein def: "The left thoracic supracardinal vein loses its connection with the left posterior cardinal veins and left sinus horn and subsequently drains into the right supracardinal system." [ISBN-10:0443065837 "Human embryology, Larsen"] xref: SCTID:361449001 is_a: UBERON:0006300 ! supracardinal vein [Term] id: UBERON:0008268 name: right supracardinal vein def: "The right supracardinal vein loses its connection with the posterior cardinal vein and makes a new anastomosis with the segments of the superior vena cava derived from the anterior cardinal vein, becoming the azygos vein." [ISBN-10:0443065837 "Human embryology, Larsen"] xref: EHDAA2:0004539 xref: SCTID:361450001 is_a: UBERON:0006300 ! supracardinal vein [Term] id: UBERON:0008269 name: nacre def: "an organic-inorganic composite material produced by some mollusks as an inner shell layer; it is also what makes up pearls. It is very strong, resilient, and iridescent. Nacre is found in some ancient lineages of bivalve gastropod and cephalopod. The inner layer in the great majority of mollusk shells is porcellaneous, not nacreous, frequently resulting in a non-iridescent shine or less commonly in non-nacreous iridescence such as flame structure (e.g. conch pearl). Pearls and the inside layer of pearl oyster and freshwater pearl mussel shells are made of nacre. Many other families of mollusk also have a nacreous inner shell layer, including marine gastropods such as the Haliotidae, the Trochidae and the Turbinidae. Nacre is composed of hexagonal platelets of aragonite (a form of calcium carbonate) 10-20 µm wide and 0.5 µm thick arranged in a continuous parallel lamina. These layers are separated by sheets of organic matrix composed of elastic biopolymers (such as chitin, lustrin and silk-like proteins)[WP]." [Wikipedia:Nacre] synonym: "mother of pearl" EXACT [Wikipedia:Nacre] is_a: UBERON:0000463 ! portion of organism substance is_a: UBERON:0004755 ! skeletal tissue [Term] id: UBERON:0008270 name: mollusc shell def: "a calcareous exoskeleton which encloses, supports and protects the soft parts of an animal in the phylum Mollusca, which includes snails, clams, tusk shells, and several other classes. Not all shelled molluscs live in the sea, many live on the land and in freshwater." [Wikipedia:Mollusc_shell] is_a: UBERON:0006612 ! shell [Term] id: UBERON:0008271 name: turtle shell def: "The upper shell of the turtle is called the carapace. The lower shell that encases the belly is called the plastron. The carapace and plastron are joined together on the turtle's sides by bony structures called bridges. The inner layer of a turtle's shell is made up of about 60 bones that include portions of the backbone and the ribs, meaning the turtle cannot crawl out of its shell. In most turtles, the outer layer of the shell is covered by horny scales called scutes that are part of its outer skin, or epidermis. Scutes are made up of a fibrous protein called keratin that also makes up the scales of other reptiles. These scutes overlap the seams between the shell bones and add strength to the shell. Some turtles do not have horny scutes. For example, the leatherback sea turtle and the soft-shelled turtles have shells covered with leathery skin instead[WP]." [Wikipedia:Turtle_shell#Shell] is_a: UBERON:0006612 ! shell [Term] id: UBERON:0008274 name: mollusc venom def: "Venoms from mollusks, including the Conus and Octopus species. The venoms contain proteins, enzymes, choline derivatives, slow-reacting substances, and several characterized polypeptide toxins that affect the nervous system. Mollusk venoms include cephalotoxin, venerup in, maculotoxin, surugatoxin, conotoxins, and murexine." [MESH:D.24.185.926.580.590] synonym: "conus venom" RELATED [MESH:D.24.185.926.580.590] synonym: "mollusc venom" RELATED [MESH:D.24.185.926.580.590] synonym: "mollusk venom" RELATED [MESH:D.24.185.926.580.590] synonym: "octopus venom" RELATED [MESH:D.24.185.926.580.590] synonym: "snail venom" RELATED [MESH:D.24.185.926.580.590] xref: MESH:D.24.185.926.580.590 is_a: UBERON:0007113 {source="MESH"} ! venom [Term] id: UBERON:0008275 name: carapace def: "The carapace is the dorsal (back), convex part of the shell structure of a turtle, consisting primarily of the animal's broad ribcage. The spine and ribs are fused to bony plates beneath the skin which interlock to form a hard shell. Exterior to the skin the shell is covered by scutes, which are horny plates made of keratin that protect the shell from scrapes and bruises. A keel, a ridge that runs from front to the back of the animal is present in some turtles. Turtles can survive surprisingly severe injuries to the carapace, and even deep cracks or missing portions can fill in with bone and heal. The softshell turtles, pig-nose turtle and leatherback sea turtle lack scutes and the bony carapace is covered only by skin." [Wikipedia:Carapace#Turtles_and_tortoises] comment: note BTO class is more general xref: BTO:0001701 is_a: UBERON:0008271 ! turtle shell [Term] id: UBERON:0008276 name: plastron def: "The plastron is the nearly flat part of the shell structure of a turtle or tortoise, what one would call the belly, similar in composition to the carapace; with an external layer of horny material divided into plates called scutes and an underlying layer of interlocking bones. In certain families there is a hinge between the pectoral and abdominal scutes allowing the turtle to almost completely enclose itself. In certain species the sex of a testudine can be told by whether the plastron is concave, male or convex, female. This is because of the mating position. The plastral scutes join along a central seam down the middle of the plastron. The relative lengths of the seam segments can be used to help identify a species of turtle or tortoise. There are six laterally symmetric pairs of scutes on the plastron: gular, humeral, pectoral, abdominal, femoral, and anal (going from the head to the tail down the seam); the abdominal and gular scute seams are approximately the same length, and the femoral and pectoral seams are approximately the same length[WP]." [Wikipedia:Plastron] comment: note BTO class is more general xref: BTO:0001701 xref: SCTID:64243001 is_a: UBERON:0008271 ! turtle shell [Term] id: UBERON:0008277 name: cnida synonym: "cniade" EXACT PLURAL [] is_a: UBERON:0000470 ! cell part [Term] id: UBERON:0008278 name: nematocyst def: "One of the stinging organelles of coelenterates used in catching prey." [BTO:0000918] xref: BTO:0000918 is_a: UBERON:0008277 ! cnida [Term] id: UBERON:0008279 name: spirocyst is_a: UBERON:0008277 ! cnida [Term] id: UBERON:0008280 name: cnidarian venom def: "Venoms from jellyfish, corals, SEA ANEMONES, etc. They contain hemo-, cardio-, dermo- , and neurotoxic substances and probably ENZYMES. They include palytoxin, sarcophine, and anthopleurine." [MESH:D.24.185.926.580.230] synonym: "chironex venom" RELATED [MESH:D.24.185.926.580.230] synonym: "cnidarian venom" RELATED [MESH:D.24.185.926.580.230] synonym: "jellyfish venom" RELATED [MESH:D.24.185.926.580.230] synonym: "portuguese man of war venom" RELATED [MESH:D.24.185.926.580.230] synonym: "portuguese man-of-war venom" RELATED [MESH:D.24.185.926.580.230] synonym: "sea anemone venom" RELATED [MESH:D.24.185.926.580.230] xref: MESH:D.24.185.926.580.230 is_a: UBERON:0007113 {source="MESH"} ! venom [Term] id: UBERON:0008281 name: tooth bud def: "A knoblike tooth primordium developing into an enamel organ surrounded by a dental sac and encasing the dental papilla." [BTO:0001838] xref: BTO:0001838 xref: ncithesaurus:Tooth_Bud xref: SCTID:53301001 is_a: UBERON:0005423 ! developing anatomical structure relationship: develops_from UBERON:0005087 ! tooth placode [Term] id: UBERON:0008283 name: columnella def: "a central anatomical feature of a coiled snail shell or gastropod shell. It is often only clearly visible as a structure when the shell is broken, or sliced in half vertically, or in an X-ray." [Wikipedia:Columella_(gastropod)] synonym: "columella muscle" RELATED [BTO:0000277] xref: BTO:0000277 is_a: UBERON:0000475 ! organism subdivision disjoint_from: UBERON:0008341 ! columella nasi relationship: part_of UBERON:0008270 ! mollusc shell [Term] id: UBERON:0008284 name: columnella muscle def: "The muscle of the central column or axis of a spiral univalve shell." [BTO:0000277, Wikipedia:Columella_(gastropod)#Columellar_muscles] synonym: "columella muscle" RELATED [BTO:0000277] xref: BTO:0000277 is_a: UBERON:0001630 ! muscle organ relationship: part_of UBERON:0008283 ! columnella [Term] id: UBERON:0008285 name: rumen epithelium def: "The rumen epithelium is the tissue which lines the largest of the four fore stomachs in the ruminant animal -cows and sheep. Rumen epithelial cells are important because they are responsible for the absorption of nutrients from the rumen into the blood." [BTO:0001195, PMID:10764086] xref: BTO:0001195 is_a: UBERON:0001276 ! implied link automatically realized ! epithelium of stomach relationship: part_of UBERON:0007365 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0007365 ! rumen [Term] id: UBERON:0008286 name: feather calamus def: "The hollow basal portion of a feather below the vane[BTO]. At the base of the feather, the rachis expands to form the hollow tubular calamus (or quill) which inserts into a follicle in the skin. The basal part of the calamus is without vanes. This part is embedded within the skin follicle and has an opening at the base (proximal umbilicus) and a small opening on the side (distal umbilicus)[WP]." [BTO:0001608] synonym: "feather quill" RELATED [BTO:0001608] xref: BTO:0001608 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0000022 {source="BTO"} ! feather [Term] id: UBERON:0008287 name: feather vane is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0008292 ! vaned feature [Term] id: UBERON:0008288 name: feather rachis is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0000022 ! feather [Term] id: UBERON:0008290 name: afterfeather is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0000022 ! feather [Term] id: UBERON:0008291 name: down feature is_a: UBERON:0000022 ! feather [Term] id: UBERON:0008292 name: vaned feature is_a: UBERON:0000022 ! feather [Term] id: UBERON:0008293 name: filoplume feature synonym: "filoplume" EXACT [] is_a: UBERON:0000022 ! feather [Term] id: UBERON:0008294 name: feather barb def: "One of a series of branches fused to the rachis (stem) of a feather. The barbs themselves also have branches called barbules, which have hooks that lock the barbs together[WP]." [Wikipedia:Barb_(feather)] synonym: "barb" BROAD SENSU [] is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0000022 ! feather [Term] id: UBERON:0008295 name: feather barbule is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0000022 ! feather [Term] id: UBERON:0008296 name: femoral muscle def: "Origin: anterior and lateral surfaces of femur; insertion: patella, common tendon of quadriceps femoris; innervation: femoral; action, extends leg." [BTO:0002542] synonym: "crureus" RELATED [BTO:0002542] synonym: "intermediate great muscle" RELATED [BTO:0002542] synonym: "intermediate vastus muscle" RELATED [BTO:0002542] synonym: "musculus vastus intermedius" RELATED [BTO:0002542] xref: BTO:0002542 is_a: UBERON:0001383 {source="BTO"} ! muscle of leg [Term] id: UBERON:0008297 name: pennaceous feature def: "Pennaceous feathers are also known as contour feathers. This type of feather is present in most modern birds, and has been shown in some species of maniraptoran dinosaurs. Pennaceous feathers have a central shaft (or rachis) with vanes spreading to either side. These vanes are composed of a high number of flattened barbs, that are connected to one another with barbules. The barbules are tiny strands that criss-cross on the flattened side s of the barbs. This forms a kind of miniature velcro-like mesh that holds all the barbs together, stabilizing the vanes. Flight feathers (remiges and rectrices) are specialized types of pennaceous feathers, adapted for high loadings and often strongly asymmetric for improved flight performance[WP]." [Wikipedia:Pennaceous_feather] is_a: UBERON:0008292 ! vaned feature [Term] id: UBERON:0008304 name: inner chondrogenic layer of perichondrium def: "The perichondrium consists of two separate layers: an outer fibrous layer and inner chondrogenic layer. The chondrogenic layer remains undifferentiated and can form chondroblasts or chondrocytes." [Wikipedia:The_Free_Encyclopedia] xref: BTO:0005090 is_a: UBERON:0002384 ! connective tissue relationship: part_of UBERON:0002222 {source="BTO"} ! perichondrium [Term] id: UBERON:0008305 name: outer fibrous layer of perichondrium def: "The perichondrium consists of two separate layers: an outer fibrous layer and inner chondrogenic layer. The fibrous layer contains fibroblasts, which produce collagenous fibers." [Wikipedia:The_Free_Encyclopedia] xref: BTO:0005091 is_a: UBERON:0002384 ! connective tissue relationship: part_of UBERON:0002222 {source="BTO"} ! perichondrium [Term] id: UBERON:0008307 name: heart endothelium xref: BTO:0004293 is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004852 ! implied link automatically realized ! cardiovascular system endothelium relationship: part_of UBERON:0000948 intersection_of: UBERON:0001986 ! endothelium intersection_of: part_of UBERON:0000948 ! heart [Term] id: UBERON:0008310 name: nasopharyngeal gland subset: organ_slim xref: FMA:55076 xref: SCTID:178973008 is_a: UBERON:0003295 ! implied link automatically realized ! pharyngeal gland relationship: part_of UBERON:0001728 intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0001728 ! nasopharynx [Term] id: UBERON:0008311 name: penile bulb artery def: "a short vessel of large caliber which arises from the internal pudendal between the two layers of fascia of the urogenital diaphragm; it passes medialward, pierces the inferior fascia of the urogenital diaphragm, and gives off branches which ramify in the bulb of the urethra and in the posterior part of the corpus spongiosum. It gives off a small branch to the bulbo-urethral gland." [Wikipedia:Bulbourethral_artery] synonym: "arteria bulbi penis" EXACT [BTO:0005087] synonym: "artery of bulb of penis" EXACT [FMA:20864] synonym: "bulbourethral artery" RELATED [BTO:0005087] xref: BTO:0005087 xref: FMA:20864 xref: SCTID:293338009 is_a: UBERON:0001637 {source="Obol"} ! artery is_a: UBERON:0004803 ! implied link automatically realized ! penis epithelium relationship: branch_of UBERON:0007315 {source="FMA"} ! internal pudendal artery relationship: part_of UBERON:0000989 {source="Obol"} ! penis relationship: part_of UBERON:0008320 {source="BTO"} ! common penile artery [Term] id: UBERON:0008320 name: common penile artery def: "The artery that serves blood to the penis. It subdivides into three arteries, the bulbourethral artery, the dorsal artery of the penis and the cavernosal artery." [Wikipedia:Penile_artery] comment: todo - split generic structure from arterial tree synonym: "penile artery" RELATED [BTO:0005085] xref: BTO:0005085 xref: FMA:66318 xref: SCTID:282044005 is_a: UBERON:0004573 {source="FMA"} ! systemic artery is_a: UBERON:0004803 ! implied link automatically realized ! penis epithelium relationship: part_of UBERON:0000989 {source="BTO"} ! penis [Term] id: UBERON:0008321 name: deep artery of penis def: "The deep artery of the penis (artery to the corpus cavernosum), one of the terminal branches of the internal pudendal, arises from that vessel while it is situated between the two fasciC& of the urogenital diaphragm (deep perineal pouch). It pierces the inferior fascia, and, entering the crus penis obliquely, runs forward in the center of the corpus cavernosum penis, to which its branches are distributed." [Wikipedia:Deep_artery_of_the_penis] synonym: "arteria cavernosa penis" RELATED [BTO:0005086] synonym: "arteria profunda penis" EXACT [BTO:0005086] synonym: "cavernosal artery" RELATED [BTO:0005086] synonym: "deep penile artery" EXACT [FMA:19794] xref: BTO:0005086 xref: FMA:19794 xref: SCTID:244293007 is_a: UBERON:0001637 {source="Obol"} ! artery is_a: UBERON:0004803 ! implied link automatically realized ! penis epithelium relationship: branch_of UBERON:0007315 {source="FMA"} ! internal pudendal artery relationship: part_of UBERON:0000989 {source="FMA"} ! penis relationship: part_of UBERON:0008320 {source="BTO"} ! common penile artery [Term] id: UBERON:0008322 name: deep artery of clitoris def: "The deep artery of clitoris is a branch of the internal pudendal artery." [Wikipedia:Deep_artery_of_clitoris] xref: FMA:20870 xref: SCTID:244297008 is_a: UBERON:0001637 {source="Obol"} ! artery is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: branch_of UBERON:0007315 {source="FMA"} ! internal pudendal artery relationship: part_of UBERON:0002411 {source="FMA"} ! clitoris [Term] id: UBERON:0008323 name: dorsal artery of clitoris xref: FMA:20867 xref: SCTID:244298003 is_a: UBERON:0001637 {source="MA"} ! artery is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: branch_of UBERON:0007315 {source="FMA"} ! internal pudendal artery relationship: part_of UBERON:0002411 {source="FMA"} ! clitoris [Term] id: UBERON:0008324 name: erectile tissue is_a: UBERON:0000479 ! tissue [Term] id: UBERON:0008330 name: vestibulum vaginae def: "The space posterior to the glans clitoridis and between the labia minora, containing the openings of the vagina, urethra, and ducts of the greater vestibular glands." [BTO:0003145, Wikipedia:Vulval_vestibule] synonym: "vaginal introitus" RELATED [BTO:0003145] synonym: "vaginal vestibule" EXACT [FMA:19970] synonym: "vestibule of vagina" RELATED [BTO:0003145] synonym: "vestibule of vagina" EXACT [FMA:19970] synonym: "vestibulum pudendi" RELATED [BTO:0003145] xref: BTO:0003145 xref: FMA:19970 is_a: UBERON:0001349 {source="FMA"} ! vestibule relationship: part_of UBERON:0000997 {source="BTO"} ! mammalian vulva relationship: part_of UBERON:0005056 {source="FMA"} ! external female genitalia [Term] id: UBERON:0008331 name: clitoral smooth muscle synonym: "clitoris smooth muscle" RELATED [BTO:0005000] xref: BTO:0005000 is_a: UBERON:0001135 {source="BTO"} ! smooth muscle tissue is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0002411 intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0002411 ! clitoris relationship: part_of UBERON:0002411 {source="BTO"} ! clitoris [Term] id: UBERON:0008332 name: hilum of neuraxis synonym: "neuraxis hilum" EXACT [FMA:83871] xref: FMA:83871 is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0008333 name: hilum of inferior olivary complex def: "The white core of the inferior olivary nucleus of the medulla oblongata, most prominent medially." [Dorlands_Medical_Dictionary:MerckSource] synonym: "hilum nuclei olivaris caudalis" RELATED [BTO:0002300] synonym: "hilum nuclei olivaris inferioris" EXACT [FMA:TA] synonym: "hilum of caudal olivary nucleus" RELATED [BTO:0002300] synonym: "hilum of inferior olivary nucleus" RELATED [BTO:0002300] synonym: "hilum of inferior olivary nucleus" EXACT [FMA:72612] synonym: "inferior olivary hilum" EXACT [FMA:72612] synonym: "inferior olive hilum" EXACT [FMA:72612] xref: BTO:0002300 xref: FMA:72612 is_a: UBERON:0002574 ! implied link automatically realized ! regional part of inferior olivary complex is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter is_a: UBERON:0008332 {source="FMA"} ! hilum of neuraxis relationship: part_of UBERON:0001896 {source="FMA"} ! medulla oblongata relationship: part_of UBERON:0007244 {source="BTO"} ! inferior olivary nucleus [Term] id: UBERON:0008334 name: subarachnoid sulcus xref: FMA:75759 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0000315 ! subarachnoid space [Term] id: UBERON:0008335 name: ventrolateral sulcus of medulla oblongata def: "A longitudinal sulcus on the anterior surface of the medulla oblongata, lateral to the pyramid, from which emerge the fibers of the hypoglossal nerve." [Dorlands_Medical_Dictionary:MerckSource] synonym: "anterolateral groove of medulla oblongata" RELATED [BTO:0002777] synonym: "anterolateral sulcus of medulla" EXACT [FMA:83797] synonym: "sulcus anterolateralis medullae oblongatae" RELATED [BTO:0002777] synonym: "sulcus anterolateralis medullae oblongatae" EXACT [FMA:TA] synonym: "sulcus ventrolateralis medullae spinalis" RELATED [BTO:0002777] synonym: "ventrolateral fissure of medulla" EXACT [FMA:83797] synonym: "ventrolateral sulcus" EXACT [FMA:83797] synonym: "ventrolateral sulcus of medulla" EXACT [FMA:83797] synonym: "ventrolateral sulcus of spinal cord" RELATED [BTO:0002777] xref: BTO:0002777 xref: FMA:83797 is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus relationship: part_of UBERON:0001896 {source="BTO"} ! medulla oblongata [Term] id: UBERON:0008337 name: inguinal part of abdomen def: "The external junctural region between the lower part of the abdomen and the thigh." [MESH:A.01.047.365] comment: galen treats inguinal region and groin as distinct synonym: "groin" EXACT [FMA:24040] synonym: "iliac fossa viewed surgically" EXACT [FMA:24040] synonym: "iliac region" RELATED [BTO:0003358] synonym: "iliac region" EXACT [FMA:24040] synonym: "inguen" RELATED [BTO:0003358] synonym: "inguen" EXACT [FMA:TA] synonym: "inguinal region" RELATED [BTO:0003358] synonym: "inguinal region" EXACT [FMA:24040] xref: BTO:0003358 xref: FMA:24040 xref: GAID:27 xref: galen:InguinalRegion xref: MESH:A.01.047.365 xref: ncithesaurus:Inguinal_Region xref: SCTID:243962005 is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0002417 ! abdominal segment of trunk [Term] id: UBERON:0008338 name: plantar part of foot def: "The sole is the bottom of the foot. In humans is the sole of the foot anatomically referred to as the plantar aspect. The equivalent surface in ungulates is the hoof." [Wikipedia:Sole_%28foot%29] synonym: "pelma" RELATED [Wikipedia:Sole_%28foot%29] synonym: "planta" EXACT [FMA:TA] synonym: "plantar region" EXACT [FMA:25000] synonym: "regio plantaris" EXACT [FMA:TA] synonym: "sole" EXACT [FMA:25000] synonym: "sole of foot" RELATED [Wikipedia:Sole_%28foot%29] synonym: "sole of foot" EXACT [FMA:25000] synonym: "sole of the foot" RELATED [Wikipedia:Sole_%28foot%29] synonym: "soles of the feet" RELATED [Wikipedia:Sole_%28foot%29] xref: BTO:0005078 xref: FMA:25000 xref: galen:SoleOfFoot xref: ncithesaurus:Plantar_Region xref: SCTID:57999000 is_a: UBERON:0005445 {source="FMA"} ! segment of foot is_a: UBERON:0008837 ! palmar/plantar part of autopod [Term] id: UBERON:0008339 name: microvascular endothelium xref: BTO:0003122 is_a: UBERON:0004852 {source="BTO"} ! cardiovascular system endothelium [Term] id: UBERON:0008340 name: nasal bridge def: "A saddle-shaped area that includes the nasal root and the lateral aspects of the nose. It lies between the glabella and the inferior boundary of the nasal bone, and extends laterally to the inner canth[WP]." [http://onlinelibrary.wiley.com/doi/10.1002/ajmg.a.32600/full, Wikipedia:Nasal_bridge] xref: MA:0002874 is_a: UBERON:0000061 {source="AEO"} ! anatomical structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0000004 ! olfactory apparatus relationship: part_of UBERON:0001456 ! face relationship: part_of UBERON:0006333 {source="MA"} ! snout [Term] id: UBERON:0008341 name: columella nasi def: "the tissue that links the nasal tip to the nasal base, and separates the nares. It is the inferior margin of the nasal septum[EoM]." [http://onlinelibrary.wiley.com/doi/10.1002/ajmg.a.32600/full] synonym: "columella" RELATED [FMA:59725] xref: FMA:59725 is_a: UBERON:0000063 ! organ segment is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0007827 {source="FMA"} ! external nose [Term] id: UBERON:0008342 name: intestinal villus of duodenum xref: FMA:63300 is_a: UBERON:0001213 {source="FMA"} ! intestinal villus is_a: UBERON:0007607 ! implied link automatically realized ! small intestine villus relationship: part_of UBERON:0000320 {source="FMA"} ! duodenal mucosa [Term] id: UBERON:0008343 name: intestinal villus of jejunum xref: FMA:63301 is_a: UBERON:0001213 {source="FMA"} ! intestinal villus is_a: UBERON:0007607 ! implied link automatically realized ! small intestine villus relationship: part_of UBERON:0000399 {source="FMA"} ! jejunal mucosa [Term] id: UBERON:0008344 name: intestinal villus of ileum xref: FMA:63302 is_a: UBERON:0001213 {source="FMA"} ! intestinal villus is_a: UBERON:0007607 ! implied link automatically realized ! small intestine villus relationship: part_of UBERON:0000331 {source="FMA"} ! ileal mucosa [Term] id: UBERON:0008345 name: ileal epithelium synonym: "epithelium of ileum" EXACT [FMA:17233] xref: FMA:17233 xref: SCTID:47046000 is_a: UBERON:0001902 ! implied link automatically realized ! epithelium of small intestine relationship: part_of UBERON:0002116 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002116 ! ileum relationship: part_of UBERON:0008344 {source="FMA"} ! intestinal villus of ileum [Term] id: UBERON:0008346 name: duodenal epithelium synonym: "epithelium of duodenum" EXACT [FMA:17231] xref: FMA:17231 xref: SCTID:66036002 is_a: UBERON:0001902 ! implied link automatically realized ! epithelium of small intestine relationship: part_of UBERON:0002114 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002114 ! duodenum relationship: part_of UBERON:0008342 {source="FMA"} ! intestinal villus of duodenum [Term] id: UBERON:0008359 name: amnion epithelium xref: BTO:0000897 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0000305 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000305 ! amnion [Term] id: UBERON:0008367 name: breast epithelium xref: BTO:0001428 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium relationship: part_of UBERON:0000310 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000310 ! breast [Term] id: UBERON:0008397 name: tracheobronchial epithelium def: "Epithelium pertaining to the trachea and bronchi." [Dorlands_Medical_Dictionary:MerckMedicus] synonym: "bronchotracheal epithelium" RELATED [BTO:0002925] xref: BTO:0002925 is_a: UBERON:0004802 {source="BTO"} ! respiratory tract epithelium [Term] id: UBERON:0008404 name: proximale tubular epithelium def: "The cells lining the proximal tubule are cuboidal epithelial cells with deep basal membrane invaginations that provide a large basal surface area. The long microvilli (the brush border) lining the tubule lumen, maximize luminal surface area and make these cells ideally suited for both reabsorptive and secretory functions." [:_Chapter_3, Renal_Physiology:Section_7] synonym: "proximale tubule epithelium" RELATED [BTO:0003576] xref: BTO:0003576 is_a: UBERON:0004810 ! implied link automatically realized ! nephron tubule epithelium relationship: part_of UBERON:0004134 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0004134 ! proximal tubule relationship: part_of UBERON:0004134 {source="BTO"} ! proximal tubule [Term] id: UBERON:0008408 name: distal tubular epithelium synonym: "distal tubule epithelium" RELATED [BTO:0003948] xref: BTO:0003948 is_a: UBERON:0004810 ! implied link automatically realized ! nephron tubule epithelium relationship: part_of UBERON:0004135 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0004135 ! distal tubule relationship: part_of UBERON:0004135 {source="BTO"} ! distal tubule [Term] id: UBERON:0008420 name: buccal epithelium xref: BTO:0004803 is_a: UBERON:0003350 ! implied link automatically realized ! epithelium of mucosa is_a: UBERON:0003929 ! implied link automatically realized ! gut epithelium is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0006956 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0006956 ! buccal mucosa relationship: part_of UBERON:0006956 {source="BTO"} ! buccal mucosa [Term] id: UBERON:0008424 name: inguinal mammary gland xref: MA:0000790 xref: SCTID:66519003 is_a: UBERON:0001911 {source="MA"} ! mammary gland is_a: UBERON:0005398 {source="MA"} ! female reproductive gland [Term] id: UBERON:0008425 name: mammary ridge def: "A bandlike thickening of ectoderm in the embryo extending from just below the axilla to the inguinal region and giving rise to the mammary glands[Stedmans]. One of two parallel lines, formed by thickenings of the epidermis (the mammary ridge) along the ventral surface of mammals of both sexes. They extend from the upper limbs (arms) to the lower limbs (legs) and are developed in the embryo. They give rise to the mammary glands and nipples but are otherwise usually not visible in the adult. The first manifestation of the mammary gland in many mammals is an elevated ridge or milk line, which then fragments into individual buds in specific regions lateral of the dorsal midline. These buds are either located in the thoracic region in primates, in the inguinal area in ungulates or along the entire length of the trunk in rodents and pigs. In humans, milk lines appear in the seventh week of embryonic development. After initial development of the milk lines they go into remission. Nipples develop on the milk lines of mammals. Most humans have two nipples, but in some cases more than two will develop. In most cases, these 'third nipples'—and sometimes fourth nipple—grow along the milk line[WP]." [http://dictionary.reference.com/browse/mammary%20ridge, Wikipedia:Milk_line] comment: split ridge and milk line? synonym: "mammary fold" EXACT [http://dictionary.reference.com/browse/mammary+ridge] synonym: "milk line" RELATED [Wikipedia:Milk_line] xref: EMAPA:18541 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0000924 ! ectoderm [Term] id: UBERON:0008426 name: transverse foramen of atlas synonym: "foramen transversarium of atlas" EXACT [FMA:23998] xref: FMA:23998 xref: SCTID:281220001 is_a: UBERON:0000130 ! implied link automatically realized ! transverse foramen is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001092 intersection_of: UBERON:0000130 ! transverse foramen intersection_of: part_of UBERON:0001092 ! first cervical vertebra [Term] id: UBERON:0008427 name: transverse foramen of axis synonym: "foramen transversarium of axis" EXACT [FMA:23999] xref: FMA:23999 xref: SCTID:281221002 is_a: UBERON:0000130 ! implied link automatically realized ! transverse foramen is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001093 intersection_of: UBERON:0000130 ! transverse foramen intersection_of: part_of UBERON:0001093 ! second cervical vertebra [Term] id: UBERON:0008428 name: ceratoglossus def: "main, posterior part of hyoglossus muscle (vs. chondroglossus) arising from the greater horn of the hyoid bone." [http://www.medilexicon.com/medicaldictionary.php?t=56655] synonym: "ceratoglossus muscle" EXACT [http://www.medilexicon.com/medicaldictionary.php?t=56655] synonym: "musculus ceratoglossus" EXACT [http://www.medilexicon.com/medicaldictionary.php?t=56655] xref: FMA:46720 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0002385 ! muscle tissue relationship: part_of UBERON:0001572 {source="FMA"} ! hyoglossus [Term] id: UBERON:0008429 name: cervical vertebral foramen xref: FMA:13480 xref: SCTID:280833008 is_a: UBERON:0001131 ! implied link automatically realized ! vertebral foramen relationship: part_of UBERON:0002413 intersection_of: UBERON:0001131 ! vertebral foramen intersection_of: part_of UBERON:0002413 ! cervical vertebra [Term] id: UBERON:0008430 name: lumbar vertebral foramen xref: FMA:24826 xref: SCTID:280835001 is_a: UBERON:0001131 ! implied link automatically realized ! vertebral foramen relationship: part_of UBERON:0002414 intersection_of: UBERON:0001131 ! vertebral foramen intersection_of: part_of UBERON:0002414 ! lumbar vertebra [Term] id: UBERON:0008431 name: sacral foramen xref: FMA:31749 is_a: UBERON:0001131 ! implied link automatically realized ! vertebral foramen relationship: part_of UBERON:0001094 intersection_of: UBERON:0001131 ! vertebral foramen intersection_of: part_of UBERON:0001094 ! sacral vertebra [Term] id: UBERON:0008432 name: thoracic vertebral foramen xref: FMA:9143 xref: SCTID:280834002 is_a: UBERON:0001131 ! implied link automatically realized ! vertebral foramen relationship: part_of UBERON:0002347 intersection_of: UBERON:0001131 ! vertebral foramen intersection_of: part_of UBERON:0002347 ! thoracic vertebra [Term] id: UBERON:0008433 name: lumbar vertebral arch synonym: "arch of lumbar vertebra" EXACT [FMA:16076] xref: FMA:16076 xref: SCTID:312766000 is_a: UBERON:0003828 ! implied link automatically realized ! abdominal segment bone is_a: UBERON:0003861 ! implied link automatically realized ! vertebral arch relationship: part_of UBERON:0002414 intersection_of: UBERON:0003861 ! vertebral arch intersection_of: part_of UBERON:0002414 ! lumbar vertebra [Term] id: UBERON:0008434 name: cervical vertebral arch synonym: "arch of cervical vertebra" EXACT [FMA:23893] xref: FMA:23893 xref: SCTID:165269004 is_a: UBERON:0003458 ! implied link automatically realized ! neck bone is_a: UBERON:0003861 ! implied link automatically realized ! vertebral arch relationship: part_of UBERON:0002413 intersection_of: UBERON:0003861 ! vertebral arch intersection_of: part_of UBERON:0002413 ! cervical vertebra [Term] id: UBERON:0008435 name: vertebral arch of sacral segment xref: FMA:32401 is_a: UBERON:0003828 ! implied link automatically realized ! abdominal segment bone is_a: UBERON:0003861 ! implied link automatically realized ! vertebral arch is_a: UBERON:0005179 ! implied link automatically realized ! pelvis organ relationship: part_of UBERON:0001094 intersection_of: UBERON:0003861 ! vertebral arch intersection_of: part_of UBERON:0001094 ! sacral vertebra [Term] id: UBERON:0008436 name: thoracic vertebral arch synonym: "arch of thoracic vertebra" EXACT [FMA:9151] xref: FMA:9151 xref: SCTID:312764002 is_a: UBERON:0003827 ! implied link automatically realized ! thoracic segment bone is_a: UBERON:0003861 ! implied link automatically realized ! vertebral arch relationship: part_of UBERON:0002347 intersection_of: UBERON:0003861 ! vertebral arch intersection_of: part_of UBERON:0002347 ! thoracic vertebra [Term] id: UBERON:0008437 name: posterior arch of atlas def: "In a cervical vertebra, the posterior arch forms about two-fifths of the circumference of the ring: it ends behind in the posterior tubercle, which is the rudiment of a spinous process and gives origin to the Recti capitis posteriores minores." [Wikipedia:Posterior_arch] synonym: "posterior arch" RELATED [Wikipedia:Posterior_arch] xref: FMA:23977 xref: SCTID:181892007 is_a: UBERON:0008434 {source="FMA"} ! cervical vertebral arch relationship: part_of UBERON:0001092 {source="FMA"} ! first cervical vertebra [Term] id: UBERON:0008438 name: webbed interdigital region of forelimb is_a: UBERON:0006013 ! implied link automatically realized ! hand interdigital region is_a: UBERON:0006015 ! implied link automatically realized ! webbed interdigital region relationship: part_of UBERON:0002398 intersection_of: UBERON:0006015 ! webbed interdigital region intersection_of: part_of UBERON:0002398 ! hand relationship: part_of UBERON:0008441 ! webbed hand [Term] id: UBERON:0008439 name: webbed interdigital region of hindlimb synonym: "toe web" EXACT [Obol:automatic] is_a: UBERON:0006014 ! implied link automatically realized ! foot interdigital region is_a: UBERON:0006015 ! implied link automatically realized ! webbed interdigital region relationship: part_of UBERON:0002387 intersection_of: UBERON:0006015 ! webbed interdigital region intersection_of: part_of UBERON:0002387 ! foot relationship: part_of UBERON:0008442 ! webbed foot [Term] id: UBERON:0008440 name: webbed autpod is_a: UBERON:0002470 ! implied link automatically realized ! autopod relationship: has_part UBERON:0006015 intersection_of: UBERON:0002470 ! autopod intersection_of: has_part UBERON:0006015 ! webbed interdigital region [Term] id: UBERON:0008441 name: webbed hand xref: AAO:0010120 is_a: UBERON:0002398 ! implied link automatically realized ! hand is_a: UBERON:0008440 ! implied link automatically realized ! webbed autpod relationship: has_part UBERON:0006015 intersection_of: UBERON:0002398 ! hand intersection_of: has_part UBERON:0006015 ! webbed interdigital region [Term] id: UBERON:0008442 name: webbed foot xref: AAO:0010121 is_a: UBERON:0002387 ! implied link automatically realized ! foot is_a: UBERON:0008440 ! implied link automatically realized ! webbed autpod relationship: has_part UBERON:0006015 intersection_of: UBERON:0002387 ! foot intersection_of: has_part UBERON:0006015 ! webbed interdigital region [Term] id: UBERON:0008443 name: webbed digit is_a: UBERON:0002544 ! implied link automatically realized ! digit relationship: part_of UBERON:0008440 intersection_of: UBERON:0002544 ! digit intersection_of: part_of UBERON:0008440 ! webbed autpod [Term] id: UBERON:0008444 name: webbed forelimb digit synonym: "webbed finger" EXACT [Obol:automatic] is_a: UBERON:0002389 ! implied link automatically realized ! hand digit is_a: UBERON:0008443 ! implied link automatically realized ! webbed digit relationship: part_of UBERON:0008441 intersection_of: UBERON:0002544 ! digit intersection_of: part_of UBERON:0008441 ! webbed hand [Term] id: UBERON:0008445 name: webbed hindlimb digit synonym: "webbed toe" EXACT [Obol:automatic] is_a: UBERON:0001466 ! implied link automatically realized ! foot digit is_a: UBERON:0008443 ! implied link automatically realized ! webbed digit relationship: part_of UBERON:0008442 intersection_of: UBERON:0002544 ! digit intersection_of: part_of UBERON:0008442 ! webbed foot [Term] id: UBERON:0008446 name: flexor pollicis longus muscle def: "The flexor pollicis longus (FPL, Latin flexor, bender; pollicis, thumb; longus, long) is a muscle in the forearm and hand that flexes the thumb. It lies in the same plane as the flexor digitorum profundus. This muscle is unique to humans, being 'either rudimentary or absent' in other primates." [Wikipedia:Flexor_pollicis_longus_muscle] synonym: "flexor pollicis" RELATED [Wikipedia:Flexor_pollicis_longus_muscle] synonym: "flexor pollicis longus" RELATED [Wikipedia:Flexor_pollicis_longus_muscle] xref: FMA:38481 xref: SCTID:361818001 is_a: UBERON:0004254 {source="Wikipedia"} ! forelimb zeugopod muscle [Term] id: UBERON:0008447 name: intertarsal articulation def: "Intertarsal articulations are the joints of the tarsus. The specific intertarsal articulations are: Talocalcaneal articulation Talocalcaneonavicular articulation Calcaneocuboid articulation Cuneonavicular articulation Cuboideonavicular articulation Intercuneiform articulation Cuneocuboid articulation" [Wikipedia:Intertarsal_articulations] synonym: "articulationes intertarsale" RELATED [MESH:A.02.835.583.378.831] synonym: "articulationes intertarseae" RELATED [MESH:A.02.835.583.378.831] synonym: "intermetatarsal joint" RELATED [MESH:A.02.835.583.378.831] synonym: "intertarsal" RELATED [Wikipedia:Intertarsal_articulations] synonym: "intertarsal articulation" RELATED [Wikipedia:Intertarsal_articulations] synonym: "intertarsal joint" RELATED [MESH:A.02.835.583.378.831] synonym: "tarsal joint" RELATED [MESH:A.02.835.583.378.831] synonym: "tarsal joints" RELATED [Wikipedia:Intertarsal_articulations] xref: FMA:44281 xref: GAID:259 xref: MESH:A.02.835.583.378.831 xref: ncithesaurus:Tarsal_Joint is_a: UBERON:0001487 {source="GAID"} ! joint of foot [Term] id: UBERON:0008449 name: trochlear notch def: "The semilunar notch of the ulna (trochlear notch of ulna, greater sigmoid cavity) is a large depression, formed by the olecranon and the coronoid process, and serving for articulation with the trochlea of the humerus. About the middle of either side of this notch is an indentation, which contracts it somewhat, and indicates the junction of the olecranon and the coronoid process. The notch is concave from above downward, and divided into a medial and a lateral portion by a smooth ridge running from the summit of the olecranon to the tip of the coronoid process. The medial portion is the larger, and is slightly concave transversely; the lateral is convex above, slightly concave below." [Wikipedia:Trochlear_notch] synonym: "incisura trochlearis" RELATED [Wikipedia:Trochlear_notch] synonym: "semilunar notch" RELATED [Wikipedia:Trochlear_notch] synonym: "semilunar notch of ulna" EXACT [FMA:23619] xref: FMA:23619 is_a: UBERON:0005055 ! implied link automatically realized ! zone of long bone is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ relationship: part_of UBERON:0006822 ! proximal epiphysis of ulna [Term] id: UBERON:0008450 name: psoas def: "A powerful flexor of the thigh at the hip joint (psoas major) and a weak flexor of the trunk and lumbar spinal column (psoas minor). Psoas is derived from the Greek \"psoa\", the plural meaning \"muscles of the loin\". It is a common site of infection manifesting as abscess (PSOAS ABSCESS). The psoas muscles and their fibers are also used frequently in experiments in muscle physiology." [MESH:A.02.633.567.825] xref: BTO:0001140 xref: galen:Psoas xref: MA:0002553 xref: MESH:A.02.633.567.825 is_a: UBERON:0002378 {source="BTO"} ! muscle of abdomen [Term] id: UBERON:0008453 name: rectus capitis anterior def: "The rectus capitis anterior (rectus capitis anticus minor) is a short, flat muscle, situated immediately behind the upper part of the Longus capitis. It arises from the anterior surface of the lateral mass of the atlas, and from the root of its transverse process, and passing obliquely upward and medialward, is inserted into the inferior surface of the basilar part of the occipital bone immediately in front of the foramen magnum." [Wikipedia:Rectus_capitis_anterior_muscle] synonym: "anterior rectus capitis" EXACT [FMA:46312] synonym: "anterior rectus capitis muscle" RELATED [Wikipedia:Rectus_capitis_anterior_muscle] synonym: "anterior vertebral muscle" RELATED [Wikipedia:Rectus_capitis_anterior_muscle] synonym: "recti capitis anteriores" RELATED [Wikipedia:Rectus_capitis_anterior_muscle] synonym: "rectus capitis" RELATED [Wikipedia:Rectus_capitis_anterior_muscle] synonym: "rectus capitis anterior" RELATED [Wikipedia:Rectus_capitis_anterior_muscle] synonym: "rectus capitis anterior muscle" EXACT [Wikipedia:Rectus_capitis_anterior_muscle] synonym: "rectus capitus anterior" RELATED [Wikipedia:Rectus_capitis_anterior_muscle] synonym: "rectus capitus anterior muscle" RELATED [Wikipedia:Rectus_capitis_anterior_muscle] xref: FMA:46312 xref: SCTID:244838005 is_a: UBERON:0004518 {source="FMA"} ! muscle of vertebral column [Term] id: UBERON:0008454 name: rectus capitis posterior major def: "The Rectus capitis posterior major (Rectus capitis posticus major) arises by a pointed tendon from the spinous process of the axis, and, becoming broader as it ascends, is inserted into the lateral part of the inferior nuchal line of the occipital bone and the surface of the bone immediately below the line. As the muscles of the two sides pass upward and lateralward, they leave between them a triangular space, in which the Recti capitis posteriores minores are seen. Its main actions are to extend and rotate the atlanto-occipital joint." [Wikipedia:Rectus_capitis_posterior_major_muscle] synonym: "greater posterior rectus capitis" EXACT [FMA:32525] synonym: "recti capitis posteriores major" RELATED [Wikipedia:Rectus_capitis_posterior_major_muscle] synonym: "rectus capitis posterior major" RELATED [Wikipedia:Rectus_capitis_posterior_major_muscle] synonym: "rectus capitis posterior major muscle" EXACT [Wikipedia:Rectus_capitis_posterior_major_muscle] synonym: "rectus capitus posterior major" RELATED [Wikipedia:Rectus_capitis_posterior_major_muscle] synonym: "rectus capitus posterior major muscle" RELATED [Wikipedia:Rectus_capitis_posterior_major_muscle] synonym: "rectus posterior major" RELATED [Wikipedia:Rectus_capitis_posterior_major_muscle] xref: FMA:32525 xref: SCTID:245994002 is_a: UBERON:0004518 {source="FMA"} ! muscle of vertebral column [Term] id: UBERON:0008455 name: rectus capitis posterior minor def: "The Rectus capitis posterior minor (Rectus capitis posticus minor) arises by a narrow pointed tendon from the tubercle on the posterior arch of the atlas, and, widening as it ascends, is inserted into the medial part of the inferior nuchal line of the occipital bone and the surface between it and the foramen magnum, and also takes some attachment to the spinal dura. The synergists are the rectus capitus posterior major and Obliquus capitis. Connective tissue bridges were noted at the atlanto-occipital junction between the rectus capitis posterior minor muscle and the dorsal spinal dura. The perpendicular arrangement of these fibers appears to restrict dural movement toward the spinal cord. The ligamentum nuchae was found to be continuous with the posterior cervical spinal dura and the lateral portion of the occipital bone. Anatomic structures innervated by cervical nerves C1-C3 have the potential to cause headache pain. Included are the joint complexes of the upper 3 cervical segments, the dura mater, and spinal cord. The dura-muscular, dura-ligamentous connections in the upper cervical spine and occipital areas may provide anatomic and physiologic answers to the cause of the cervicogenic headache. This proposal would further explain manipulation's efficacy in the treatment of cervicogenic headache ." [Wikipedia:Rectus_capitis_posterior_minor_muscle] synonym: "lesser posterior rectus capitis" EXACT [FMA:32526] synonym: "recti capitis posteriores minores" RELATED [Wikipedia:Rectus_capitis_posterior_minor_muscle] synonym: "rectus capitis posterior minor" RELATED [Wikipedia:Rectus_capitis_posterior_minor_muscle] synonym: "rectus capitis posterior minor muscle" EXACT [Wikipedia:Rectus_capitis_posterior_minor_muscle] synonym: "rectus capitus posterior minor" RELATED [Wikipedia:Rectus_capitis_posterior_minor_muscle] synonym: "rectus capitus posterior minor muscle" RELATED [Wikipedia:Rectus_capitis_posterior_minor_muscle] synonym: "rectus posterior minor" RELATED [Wikipedia:Rectus_capitis_posterior_minor_muscle] xref: FMA:32526 xref: SCTID:245995001 is_a: UBERON:0004518 {source="FMA"} ! muscle of vertebral column [Term] id: UBERON:0008456 name: superior articular process of lumbar vertebra synonym: "cranial articular process of lumbar vertebra" EXACT [FMA:16126] xref: FMA:16126 xref: SCTID:305677003 is_a: UBERON:0001079 ! implied link automatically realized ! superior articular process of vertebra relationship: part_of UBERON:0002414 intersection_of: UBERON:0001079 ! superior articular process of vertebra intersection_of: part_of UBERON:0002414 ! lumbar vertebra [Term] id: UBERON:0008457 name: superior articular process of sacral vertebra synonym: "articular process of sacral segment" EXACT [FMA:16215] synonym: "processus articularis superior (os sacrum)" EXACT [FMA:16215] synonym: "processus articularis superior ossis sacri" EXACT [FMA:TA] synonym: "superior articular process of sacral segment" EXACT [FMA:16215] synonym: "superior articular process of sacrum" EXACT [FMA:16215] xref: FMA:16215 is_a: UBERON:0001079 ! implied link automatically realized ! superior articular process of vertebra relationship: part_of UBERON:0001094 intersection_of: UBERON:0001079 ! superior articular process of vertebra intersection_of: part_of UBERON:0001094 ! sacral vertebra [Term] id: UBERON:0008459 name: superior articular process of cervical vertebra xref: FMA:23969 xref: SCTID:57767002 is_a: UBERON:0001079 ! implied link automatically realized ! superior articular process of vertebra relationship: part_of UBERON:0002413 intersection_of: UBERON:0001079 ! superior articular process of vertebra intersection_of: part_of UBERON:0002413 ! cervical vertebra [Term] id: UBERON:0008460 name: superior articular process of thoracic vertebra synonym: "cranial articular process of thoracic vertebra" EXACT [FMA:9155] synonym: "processus articularis (zygapophysis) thoracicus superior" EXACT [FMA:9155] synonym: "superior apophyseal process" EXACT [FMA:9155] synonym: "superior zygapophysis" EXACT [FMA:9155] xref: FMA:9155 xref: SCTID:367801006 is_a: UBERON:0001079 ! implied link automatically realized ! superior articular process of vertebra relationship: part_of UBERON:0002347 intersection_of: UBERON:0001079 ! superior articular process of vertebra intersection_of: part_of UBERON:0002347 ! thoracic vertebra [Term] id: UBERON:0008461 name: inferior articular process of lumbar vertebra synonym: "caudal articular process of lumbar vertebra" EXACT [FMA:16127] xref: FMA:16127 xref: SCTID:306283004 is_a: UBERON:0001080 ! implied link automatically realized ! inferior articular process of vertebra relationship: part_of UBERON:0002414 intersection_of: UBERON:0001080 ! inferior articular process of vertebra intersection_of: part_of UBERON:0002414 ! lumbar vertebra [Term] id: UBERON:0008462 name: inferior articular process of cervical vertebra xref: FMA:23970 xref: SCTID:61633005 is_a: UBERON:0001080 ! implied link automatically realized ! inferior articular process of vertebra relationship: part_of UBERON:0002413 intersection_of: UBERON:0001080 ! inferior articular process of vertebra intersection_of: part_of UBERON:0002413 ! cervical vertebra [Term] id: UBERON:0008463 name: inferior articular process of thoracic vertebra synonym: "caudal articular process of thoracic vertebra" EXACT [FMA:9156] synonym: "inferior apophyseal process" EXACT [FMA:9156] synonym: "inferior zygapophysis" EXACT [FMA:9156] synonym: "processus articularis (zygapophysis) thoracicus inferior" EXACT [FMA:9156] xref: FMA:9156 xref: SCTID:367814007 is_a: UBERON:0001080 ! implied link automatically realized ! inferior articular process of vertebra relationship: part_of UBERON:0002347 intersection_of: UBERON:0001080 ! inferior articular process of vertebra intersection_of: part_of UBERON:0002347 ! thoracic vertebra [Term] id: UBERON:0008464 name: abductor hallucis muscle def: "The Abductor hallucis lies along the medial border of the foot and covers the origins of the plantar vessels and nerves. It arises from the medial process of the tuberosity of the calcaneus, from the laciniate ligament, from the plantar aponeurosis, and from the intermuscular septum between it and the Flexor digitorum brevis. The fibers end in a tendon, which is inserted, together with the medial tendon of the Flexor hallucis brevis, into the tibial side of the base of the first phalanx of the great toe." [Wikipedia:Abductor_hallucis_muscle] synonym: "abductor hallucis" RELATED [Wikipedia:Abductor_hallucis_muscle] xref: FMA:37448 xref: SCTID:181723001 xref: Wikipedia:Abductor_hallucis_muscle is_a: UBERON:0001498 ! implied link automatically realized ! muscle of foot is_a: UBERON:0001630 ! muscle organ relationship: part_of UBERON:0008338 ! plantar part of foot [Term] id: UBERON:0008465 name: abductor pollicis brevis muscle def: "The abductor pollicis brevis is a muscle in the hand that functions as an abductor of the thumb." [Wikipedia:Abductor_pollicis_brevis_muscle] synonym: "abductor brevis" RELATED [Wikipedia:Abductor_pollicis_brevis_muscle] synonym: "abductor pollicis brevis" RELATED [Wikipedia:Abductor_pollicis_brevis_muscle] xref: FMA:37373 xref: SCTID:181648007 xref: Wikipedia:Abductor_pollicis_brevis_muscle is_a: UBERON:0001500 ! implied link automatically realized ! muscle of hand is_a: UBERON:0001630 ! muscle organ relationship: part_of UBERON:0002398 ! hand [Term] id: UBERON:0008488 name: cremaster muscle def: "The cremaster muscle is a muscle that covers the testis." [Wikipedia:Cremaster_muscle] synonym: "cremaster" EXACT [FMA:21531] synonym: "cremaster muscle" RELATED [Wikipedia:Cremaster_muscle] synonym: "cremasteric muscle" RELATED [Wikipedia:Cremaster_muscle] synonym: "muscle of riolan (cremaster)" EXACT [FMA:21531] synonym: "musculus cremaster" EXACT [FMA:TA] synonym: "musculus cremaster " EXACT [FMA:TA] xref: EMAPA:31250 xref: FMA:21531 xref: ncithesaurus:Cremaster_Muscle xref: SCTID:244948006 is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0003135 {source="EMAPA"} ! male reproductive organ [Term] id: UBERON:0008521 name: gluteus minimus def: "The gluteus minimus (or glutC&us minimus), the smallest of the three gluteal muscles, is situated immediately beneath the gluteus medius." [Wikipedia:Gluteus_minimus_muscle] synonym: "glut%c3%a6us minimus" RELATED [Wikipedia:Gluteus_minimus_muscle] synonym: "glutaeus minimus" RELATED [Wikipedia:Gluteus_minimus_muscle] synonym: "gluteus minimus" RELATED [Wikipedia:Gluteus_minimus_muscle] synonym: "gluteus minimus muscle" EXACT [] xref: FMA:22317 xref: SCTID:181676004 is_a: UBERON:0002000 {source="FMA"} ! gluteal muscle relationship: attached_to UBERON:0002503 {source="FMA"} ! greater trochanter relationship: part_of UBERON:0004470 {source="FMA"} ! musculature of pelvic girdle [Term] id: UBERON:0008522 name: nasal muscle synonym: "muscle of nose" EXACT [Obol:automatic] xref: FMA:73758 xref: ncithesaurus:Nasal_Muscle xref: SCTID:244730009 is_a: UBERON:0001577 {source="FMA"} ! muscle of face is_a: UBERON:0003831 ! implied link automatically realized ! respiratory system muscle is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0000004 intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0000004 ! olfactory apparatus [Term] id: UBERON:0008523 name: infrahyoid muscle def: "The infrahyoid muscles are a group of four pairs of muscles in the anterior part of the neck. (The term infrahyoid refers to the region below to the hyoid bone in the neck. ) Collectively, they are referred to as the strap muscles, because the muscles are long and flat much like a strap." [Wikipedia:Infrahyoid_muscles] synonym: "infrahyoid" RELATED [Wikipedia:Infrahyoid_muscles] synonym: "infrahyoid muscle" RELATED [Wikipedia:Infrahyoid_muscles] synonym: "infrahyoidala" RELATED [Wikipedia:Infrahyoid_muscles] synonym: "strap muscle" RELATED [Wikipedia:Infrahyoid_muscles] synonym: "strap muscles" RELATED [Wikipedia:Infrahyoid_muscles] xref: FMA:13338 xref: SCTID:244829008 is_a: UBERON:0002377 {source="FMA"} ! muscle of neck [Term] id: UBERON:0008529 name: piriformis def: "The piriformis (from Latin piriformis = \"pear shaped\") is a muscle in the gluteal region of the lower limb." [Wikipedia:Piriformis_muscle] synonym: "m.piriformis" EXACT [FMA:19082] synonym: "musculus piriformis" RELATED [Wikipedia:Piriformis_muscle] synonym: "piriform muscle" RELATED [Wikipedia:Piriformis_muscle] synonym: "piriformis" RELATED [Wikipedia:Piriformis_muscle] xref: FMA:19082 is_a: UBERON:0002000 {source="FMA"} ! gluteal muscle relationship: attached_to UBERON:0002503 {source="FMA"} ! greater trochanter relationship: part_of UBERON:0004470 {source="FMA"} ! musculature of pelvic girdle [Term] id: UBERON:0008537 name: quadratus femoris def: "The quadratus femoris is, as its name implies, a flat, quadrilateral skeletal muscle. Located on the posterior side of the hip joint, it is a strong lateral rotator and adductor of the thigh, but also acts to stabilize the femoral head in the Acetabulum." [Wikipedia:Quadratus_femoris_muscle] synonym: "quadratus femoris muscle" RELATED [Wikipedia:Quadratus_femoris_muscle] xref: FMA:22321 is_a: UBERON:0002000 {source="FMA"} ! gluteal muscle relationship: part_of UBERON:0004470 {source="FMA"} ! musculature of pelvic girdle [Term] id: UBERON:0008538 name: muscle of posterior compartment of thigh def: "The posterior fascial compartment of the thigh contains the knee flexors and hip extensors. It consists of the following muscles: biceps femoris semitendinosus semimembranosus The muscles here (except for the short head of the biceps femoris) are the hamstrings." [Wikipedia:Posterior_compartment_of_thigh] synonym: "posterior fascial compartment of thigh" RELATED [Wikipedia:Posterior_compartment_of_thigh] synonym: "posterior femoral muscle" EXACT [FMA:22427] synonym: "posterior femoral muscles" RELATED [Wikipedia:Posterior_compartment_of_thigh] xref: FMA:22427 is_a: UBERON:0004252 {source="FMA"} ! hindlimb stylopod muscle [Term] id: UBERON:0008544 name: splenius cervicis def: "The splenius cervicis (splenius colli) arises by a narrow tendinous band from the spinous processes of the third to the sixth thoracic vertebrae; it is inserted, by tendinous fasciculi, into the posterior tubercles of the transverse processes of the upper two or three cervical vertebrae." [Wikipedia:Splenius_cervicis_muscle] synonym: "splenius cervicis muscle" RELATED [Wikipedia:Splenius_cervicis_muscle] xref: FMA:22681 is_a: UBERON:0002252 {source="FMA"} ! splenius [Term] id: UBERON:0008546 name: iliocostalis cervicis def: "The iliocostalis is the muscle immediately lateral to the longissimus that is the nearest to the furrow that separates the epaxial muscles from the hypaxial. It lies very deep to the fleshy portion of the serratus ventralis (serratus anterior)." [Wikipedia:Iliocostalis] synonym: "erector spinae - iliocostalis" RELATED [Wikipedia:Iliocostalis] synonym: "iliocostalis cervicis muscle" RELATED [Wikipedia:Iliocostalis] synonym: "iliocostalis lumborum" RELATED [Wikipedia:Iliocostalis] synonym: "iliocostalis muscle" RELATED [Wikipedia:Iliocostalis] synonym: "iliocostalis thoracis" RELATED [Wikipedia:Iliocostalis] synonym: "iliocostalis thoracis muscle" RELATED [Wikipedia:Iliocostalis] xref: FMA:22704 is_a: UBERON:0002251 {source="FMA"} ! iliocostalis [Term] id: UBERON:0008549 name: prevertebral muscle def: "The prevertebral muscles are the muscles located between the prevertebral fascia (older definition) and the vertebral column, i.e. , the longus capitis and longus colli muscles. It also includes the recti capitis anterior and lateralis." [Wikipedia:Prevertebral_muscles] synonym: "flexor muscle of vertebral column" EXACT [FMA:32514] xref: FMA:32514 is_a: UBERON:0004518 {source="FMA"} ! muscle of vertebral column [Term] id: UBERON:0008571 name: suprahyoid muscle def: "The term suprahyoid refers to the region above (superior to) the hyoid bone in the neck. The suprahyoid muscles include digastric, stylohyoid, geniohyoid, and mylohyoid." [Wikipedia:Suprahyoid_muscles] synonym: "suprahyoid" RELATED [Wikipedia:Suprahyoid_muscles] synonym: "suprahyoidala" RELATED [Wikipedia:Suprahyoid_muscles] xref: FMA:46290 xref: SCTID:244824003 is_a: UBERON:0002377 {source="FMA"} ! muscle of neck [Term] id: UBERON:0008572 name: posterior crico-arytenoid def: "The posterior cricoarytenoid muscles are extremely small, paired muscles that extend from the posterior cricoid cartilage to the arytenoid cartilages in the larynx. By rotating the arytenoid cartilages laterally, these muscles abduct the vocal cords and thereby open the rima glottidis. Their action opposes the lateral cricoarytenoid muscles. The posterior cricoarytenoid muscles receive innervation from the recurrent laryngeal branch of the vagus nerve (CN X). Paralysis of the posterior cricoarytenoid muscles may lead to asphyxiation as they are the only laryngeal muscles to open the true vocal folds, allowing inspiration and expiration." [Wikipedia:Posterior_cricoarytenoid_muscle] synonym: "cricoaryt%c3%a6noideus posterior" RELATED [Wikipedia:Posterior_cricoarytenoid_muscle] synonym: "cricoarytaenoideus posterior" RELATED [Wikipedia:Posterior_cricoarytenoid_muscle] synonym: "posterior cricoarytenoid muscle" EXACT [Wikipedia:Posterior_cricoarytenoid_muscle] synonym: "posterior cricoarytenoideus" EXACT [FMA:46576] xref: FMA:46576 xref: SCTID:244812005 is_a: UBERON:0006328 {source="FMA"} ! laryngeal intrinsic muscle relationship: part_of UBERON:0001737 {source="FMA"} ! larynx [Term] id: UBERON:0008573 name: lateral crico-arytenoid def: "The lateral cricoarytenoid (also anterior cricoarytenoid) muscles extend from the lateral cricoid cartilage to the ipsilateral arytenoid cartilage. By rotating the arytenoid cartilages medially, these muscles adduct the vocal cords and thereby close the rima glottidis, protecting the airway. (Their action is antagonistic to that of the posterior cricoarytenoid muscles. ) The lateral cricoarytenoid muscles receive innervation from the recurrent laryngeal branch of the vagus nerve (CN X)." [Wikipedia:Lateral_cricoarytenoid_muscle] synonym: "cricoaryt%c3%a6noideus lateralis" RELATED [Wikipedia:Lateral_cricoarytenoid_muscle] synonym: "cricoaryt%c3%a6noideus lateralis muscle" RELATED [Wikipedia:Lateral_cricoarytenoid_muscle] synonym: "cricoarytaenoideus lateralis" RELATED [Wikipedia:Lateral_cricoarytenoid_muscle] synonym: "cricoarytaenoideus lateralis muscle" RELATED [Wikipedia:Lateral_cricoarytenoid_muscle] synonym: "lateral cricoarytenoid muscle" EXACT [Wikipedia:Lateral_cricoarytenoid_muscle] synonym: "lateral cricoarytenoideus" EXACT [FMA:46579] xref: FMA:46579 xref: SCTID:244813000 is_a: UBERON:0006328 {source="FMA"} ! laryngeal intrinsic muscle relationship: part_of UBERON:0001737 {source="FMA"} ! larynx [Term] id: UBERON:0008574 name: transverse arytenoid def: "The tranverse arytenoid crosses transversely between the two cartilages. It is an unpaired muscle running from one arytenoid to another to pull the arytenoids together." [Wikipedia:Transverse_arytenoid] synonym: "tranverse arytenoid muscle" RELATED [Wikipedia:Transverse_arytenoid] xref: FMA:46582 is_a: UBERON:0006328 {source="FMA"} ! laryngeal intrinsic muscle relationship: part_of UBERON:0001737 {source="FMA"} ! larynx [Term] id: UBERON:0008575 name: oblique arytenoid def: "The oblique arytenoid, the more superficial Arytenoid muscle, forms two fasciculi, which pass from the base of one cartilage to the apex of the opposite one, and therefore cross each other like the limbs of the letter X; a few fibers are continued around the lateral margin of the cartilage, and are prolonged into the aryepiglottic fold; they are sometimes described as a separate muscle, the Aryepiglotticus. The aryepiglottic muscle together with the transverse arytenoid and the thyroarytenoid work as a sphincter and close the larynx as we swallow or cough. Its innervation is by the recurrent laryngeal nerve (from vagus) just like all the intrinsic muscles of the larynx except the cricothyroid muscle." [Wikipedia:Oblique_arytenoid] synonym: "oblique arytenoid muscle" RELATED [Wikipedia:Oblique_arytenoid] xref: FMA:46583 is_a: UBERON:0006328 {source="FMA"} ! laryngeal intrinsic muscle relationship: part_of UBERON:0001737 {source="FMA"} ! larynx [Term] id: UBERON:0008576 name: thyro-arytenoid def: "The Thyroarytenoid is a broad, thin, muscle which lies parallel with and lateral to the vocal fold, and supports the wall of the ventricle and its appendix. It functions in fine tonal control of the vocal cords." [Wikipedia:Thyroarytenoid_muscle] synonym: "thyreoaryt%c3%a6noideus" RELATED [Wikipedia:Thyroarytenoid_muscle] synonym: "thyreoaryt%c3%a6noideus muscle" RELATED [Wikipedia:Thyroarytenoid_muscle] synonym: "thyreoarytaenoideus" RELATED [Wikipedia:Thyroarytenoid_muscle] synonym: "thyreoarytaenoideus muscle" RELATED [Wikipedia:Thyroarytenoid_muscle] synonym: "thyreoepiglotticus" RELATED [Wikipedia:Thyroarytenoid_muscle] synonym: "thyro-arytenoid %26 vocalis" RELATED [Wikipedia:Thyroarytenoid_muscle] synonym: "thyro-arytenoid muscle" RELATED [Wikipedia:Thyroarytenoid_muscle] synonym: "thyroaryt%c3%a6noideus" RELATED [Wikipedia:Thyroarytenoid_muscle] synonym: "thyroarytenoid" EXACT [Wikipedia:Thyroarytenoid_muscle] synonym: "thyroarytenoid muscle" RELATED [Wikipedia:Thyroarytenoid_muscle] synonym: "ventricularis" RELATED [Wikipedia:Thyroarytenoid_muscle] synonym: "ventricularis muscle" RELATED [Wikipedia:Thyroarytenoid_muscle] xref: FMA:46588 xref: ncithesaurus:Thyroarytenoid_Muscle xref: SCTID:91561000 is_a: UBERON:0006328 {source="FMA"} ! laryngeal intrinsic muscle relationship: part_of UBERON:0001737 {source="FMA"} ! larynx [Term] id: UBERON:0008577 name: vocalis def: "The vocal muscle is the upper portion of the thyroarytenoid muscle which is primarily involved in producing speech." [Wikipedia:Vocal_muscle] synonym: "vocal muscle" EXACT [FMA:46591] xref: FMA:46591 is_a: UBERON:0006328 {source="FMA"} ! laryngeal intrinsic muscle relationship: part_of UBERON:0001737 {source="FMA"} ! larynx [Term] id: UBERON:0008582 name: superior longitudinal muscle of tongue def: "The Longitudinalis linguC& superior (Superior lingualis) is a thin stratum of oblique and longitudinal fibers immediately underlying the mucous membrane on the dorsum of the tongue." [Wikipedia:Superior_longitudinal_muscle_of_tongue] synonym: "longitudinalis lingu%c3%a6 superior" RELATED [Wikipedia:Superior_longitudinal_muscle_of_tongue] synonym: "longitudinalis linguae superior" RELATED [Wikipedia:Superior_longitudinal_muscle_of_tongue] synonym: "musculus longitudinalis superior" EXACT [FMA:46693] synonym: "superior longitudinal muscle" RELATED [Wikipedia:Superior_longitudinal_muscle_of_tongue] xref: FMA:46693 xref: SCTID:244790006 is_a: UBERON:0001576 {source="FMA"} ! intrinsic muscle of tongue [Term] id: UBERON:0008583 name: transverse muscle of tongue def: "The Transversus linguC& (tansverse lingualis) is a muscle of the tongue. It consists of fibers which arise from the median fibrous septum and pass lateralward to be inserted into the submucous fibrous tissue at the sides of the tongue." [Wikipedia:Transverse_muscle_of_tongue] synonym: "transverse lingual muscle" EXACT [FMA:46695] synonym: "transverse muscle" RELATED [Wikipedia:Transverse_muscle_of_tongue] synonym: "transversus lingu%c3%a6" RELATED [Wikipedia:Transverse_muscle_of_tongue] synonym: "transversus linguae" RELATED [Wikipedia:Transverse_muscle_of_tongue] synonym: "transversus muscle" RELATED [Wikipedia:Transverse_muscle_of_tongue] xref: FMA:46695 xref: SCTID:244792003 is_a: UBERON:0001576 {source="FMA"} ! intrinsic muscle of tongue [Term] id: UBERON:0008584 name: vertical muscle of tongue def: "The Verticalis linguC& (Vertical lingualis) is found only at the borders of the forepart of the tongue. Its fibers extend from the upper to the under surface of the organ." [Wikipedia:Vertical_muscle_of_tongue] synonym: "vertical lingual muscle" EXACT [FMA:46696] synonym: "vertical muscle" RELATED [Wikipedia:Vertical_muscle_of_tongue] synonym: "verticalis lingu%c3%a6" RELATED [Wikipedia:Vertical_muscle_of_tongue] synonym: "verticalis lingu%c3%a6 muscle" RELATED [Wikipedia:Vertical_muscle_of_tongue] synonym: "verticalis linguae" RELATED [Wikipedia:Vertical_muscle_of_tongue] synonym: "verticalis linguae muscle" RELATED [Wikipedia:Vertical_muscle_of_tongue] synonym: "verticalis muscle" RELATED [Wikipedia:Vertical_muscle_of_tongue] xref: FMA:46696 xref: SCTID:244793008 is_a: UBERON:0001576 {source="FMA"} ! intrinsic muscle of tongue [Term] id: UBERON:0008585 name: levator veli palatini def: "The levator veli palatini is the elevator muscle of the velum palatinum in the human body. During swallowing, it contracts, elevating the soft palate to help prevent food from entering the nasopharynx. It is innervated via the pharyngeal plexus, primarily by the vagus nerve (CN X). The levator veli palatini (Levator palati) is a thick, rounded muscle situated lateral to the choanC&. It arises from the under surface of the apex of the petrous part of the temporal bone and from the medial lamina of the cartilage of the auditory tube. After passing above the upper concave margin of the Constrictor pharyngis superior it spreads out in the palatine velum, its fibers extending obliquely downward and medially to the middle line, where they blend with those of the opposite side." [Wikipedia:Levator_veli_palatini] synonym: "levator palati" RELATED [Wikipedia:Levator_veli_palatini] synonym: "levator veli" RELATED [Wikipedia:Levator_veli_palatini] synonym: "levator veli palatini muscle" RELATED [Wikipedia:Levator_veli_palatini] synonym: "levator velum palatini muscle" RELATED [Wikipedia:Levator_veli_palatini] xref: FMA:46727 is_a: UBERON:0003682 {source="FMA"} ! palatal muscle [Term] id: UBERON:0008586 name: tensor veli palatini def: "The tensor veli palatini (tensor palati) is a broad, thin, ribbon-like muscle in the head that tenses the soft palate." [Wikipedia:Tensor_veli_palatini_muscle] synonym: "tensor palati" RELATED [Wikipedia:Tensor_veli_palatini_muscle] synonym: "tensor palati muscle" RELATED [Wikipedia:Tensor_veli_palatini_muscle] synonym: "tensor veli palatini" RELATED [Wikipedia:Tensor_veli_palatini_muscle] xref: FMA:46730 is_a: UBERON:0003682 {source="FMA"} ! palatal muscle [Term] id: UBERON:0008588 name: procerus def: "The Procerus is a small pyramidal slip of muscle deep to the superior orbital nerve, artery and vein." [Wikipedia:Procerus_muscle] synonym: "depressor glabellae" RELATED [Wikipedia:Procerus_muscle] synonym: "procerus muscle" RELATED [Wikipedia:Procerus_muscle] synonym: "pyramidalis nasi" RELATED [Wikipedia:Procerus_muscle] xref: FMA:46769 is_a: UBERON:0008522 {source="FMA"} ! nasal muscle [Term] id: UBERON:0008589 name: depressor septi nasi def: "The depressor septi (Depressor alE nasi) arises from the incisive fossa of the maxilla. Its fibers ascend to be inserted into the nasal septum and back part of the alar part of nasalis muscle. It lies between the mucous membrane and muscular structure of the lip." [Wikipedia:Depressor_septi_nasi_muscle] synonym: "depressor al%c3%a6 nasi" RELATED [Wikipedia:Depressor_septi_nasi_muscle] synonym: "depressor alae nasi" RELATED [Wikipedia:Depressor_septi_nasi_muscle] synonym: "depressor septi" EXACT [Wikipedia:Depressor_septi_nasi_muscle] synonym: "depressor septi nasi muscle" RELATED [Wikipedia:Depressor_septi_nasi_muscle] xref: FMA:46777 xref: SCTID:244733006 is_a: UBERON:0008522 {source="FMA"} ! nasal muscle [Term] id: UBERON:0008591 name: depressor supercilii def: "The Depressor Supercilii is an eye muscle of the human body. The nature of this muscle is in some dispute. Few printed anatomies include it (Netter, et al. ) and many authorities consider it to be part of the orbicularis oculi muscle . On the other hand, many dermatologists, ophthalmologists and plastic surgeons hold that the depressor supercilli is a distinct muscle and has a definite, individual effect on the movement of the eybrow and skin of the glabella." [Wikipedia:Depressor_supercilii_muscle] synonym: "depressor supercilii muscle" RELATED [Wikipedia:Depressor_supercilii_muscle] xref: FMA:46798 is_a: UBERON:0001577 {source="FMA"} ! muscle of face [Term] id: UBERON:0008592 name: levator labii superioris alaeque nasi def: "The levator labii superioris alaeque nasi muscle is, translated from Latin, the \"lifter of the upper lip and of the wing of the nose\". It has the longest name of any muscle in an animal." [Wikipedia:Levator_labii_superioris_alaeque_nasi_muscle] synonym: "alaeque" RELATED [Wikipedia:Levator_labii_superioris_alaeque_nasi_muscle] synonym: "elvis muscle" RELATED [Wikipedia:Levator_labii_superioris_alaeque_nasi_muscle] synonym: "levator labii superioris alaequae nasi muscle" RELATED [Wikipedia:Levator_labii_superioris_alaeque_nasi_muscle] synonym: "levator labii superioris alaeque nasi" RELATED [Wikipedia:Levator_labii_superioris_alaeque_nasi_muscle] xref: FMA:46802 is_a: UBERON:0001577 {source="FMA"} ! muscle of face [Term] id: UBERON:0008593 name: zygomaticus major def: "The Zygomatic major is a muscle of the human body. It is a muscle of facial expression which draws the angle of the mouth superiorly and posteriorly. Like all muscles of facial expression, the zygomatic major is innervated by the facial nerve (Cranial Nerve VII). The Zygomaticus extends from each zygomatic arch to the corners of the mouth. It raises the corners of the mouth when a person smiles. Dimples may be caused by variations in the structure of this muscle." [Wikipedia:Zygomaticus_major_muscle] synonym: "zygomatic major" RELATED [Wikipedia:Zygomaticus_major_muscle] synonym: "zygomatic major muscle" RELATED [Wikipedia:Zygomaticus_major_muscle] synonym: "zygomatic muscle" RELATED [Wikipedia:Zygomaticus_major_muscle] synonym: "zygomaticcus major" RELATED [Wikipedia:Zygomaticus_major_muscle] synonym: "zygomaticus major" RELATED [Wikipedia:Zygomaticus_major_muscle] xref: FMA:46810 xref: ncithesaurus:Zygomaticus_Major xref: SCTID:244739005 is_a: UBERON:0001577 {source="FMA"} ! muscle of face [Term] id: UBERON:0008594 name: zygomaticus minor def: "The zygomaticus minor is a muscle of facial expression. It originates from malar bone and continues with orbicularis oculi on the lateral face of the Levator labii superioris and then inserts into the outer part of the upper lip. Do not confuse this with the Zygomaticus major, which insets into the angle of the mouth. It draws the upper lip backward, upward, and outward (used in making sad facial expressions). </gallery> Like all muscles of facial expression, it is innervated by the facial nerve (CN VII)." [Wikipedia:Zygomaticus_minor_muscle] synonym: "zygomaticus minor" RELATED [Wikipedia:Zygomaticus_minor_muscle] xref: FMA:46811 xref: ncithesaurus:Zygomaticus_Minor is_a: UBERON:0001577 {source="FMA"} ! muscle of face [Term] id: UBERON:0008595 name: levator anguli oris def: "The levator anguli oris (caninus) is a facial muscle of the mouth arising from the canine fossa, immediately below the infraorbital foramen. Its fibers are inserted into the angle of the mouth, intermingling with those of the Zygomaticus, Triangularis, and Orbicularis oris." [Wikipedia:Levator_anguli_oris] synonym: "caninus" RELATED [Wikipedia:Levator_anguli_oris] synonym: "caninus muscle" RELATED [Wikipedia:Levator_anguli_oris] synonym: "levator anguli oris" RELATED [Wikipedia:Levator_anguli_oris] synonym: "levator anguli oris muscle" RELATED [Wikipedia:Levator_anguli_oris] synonym: "musculus levator anguli oris" RELATED [Wikipedia:Levator_anguli_oris] xref: FMA:46822 is_a: UBERON:0001577 {source="FMA"} ! muscle of face [Term] id: UBERON:0008596 name: mentalis def: "The Mentalis is a paired central muscle of the lower lip, situated at the tip of the chin. It raises and pushes up the lower lip, causing wrinkling of the chin, as in doubt or displeasure. It is ometimes referred to as the \"pouting muscle. \" Its fibers arise from the incisive fossa of the mandible, then course vertically downward to insert in the skin of the chin. A movement disorder of the mentalis muscle is Geniospasm which is a benign but socially excluding genetic disorder." [Wikipedia:Mentalis] synonym: "m mentalis" RELATED [Wikipedia:Mentalis] synonym: "mentalis muscle" RELATED [Wikipedia:Mentalis] xref: FMA:46825 is_a: UBERON:0001577 {source="FMA"} ! muscle of face [Term] id: UBERON:0008597 name: depressor anguli oris def: "The Depressor anguli oris (Triangularis) arises from the oblique line of the mandible, whence its fibers converge, to be inserted, by a narrow fasciculus, into the angle of the mouth." [Wikipedia:Depressor_anguli_oris_muscle] synonym: "depressor anguli oris" RELATED [Wikipedia:Depressor_anguli_oris_muscle] synonym: "triangularis" RELATED [Wikipedia:Depressor_anguli_oris_muscle] synonym: "triangularis muscle" RELATED [Wikipedia:Depressor_anguli_oris_muscle] xref: FMA:46828 is_a: UBERON:0001577 {source="FMA"} ! muscle of face [Term] id: UBERON:0008598 name: risorius def: "The risorius arises in the fascia over the parotid gland and, passing horizontally forward, superficial to the platysma, inserts onto the skin at the angle of the mouth. It is a narrow bundle of fibers, broadest at its origin, but varies much in its size and form." [Wikipedia:Risorius] synonym: "risorius muscle" RELATED [Wikipedia:Risorius] xref: FMA:46838 is_a: UBERON:0001577 {source="FMA"} ! muscle of face [Term] id: UBERON:0008603 name: helicis major def: "The Helicis major is a narrow vertical band situated upon the anterior margin of the helix. It arises below, from the spina helicis, and is inserted into the anterior border of the helix, just where it is about to curve backward." [Wikipedia:Helicis_major] xref: FMA:48968 is_a: UBERON:0001596 {source="FMA"} ! intrinsic auricular muscle relationship: part_of UBERON:0001757 {source="FMA"} ! pinna [Term] id: UBERON:0008604 name: helicis minor def: "The Helicis minor is an oblique fasciculus, covering the crus helicis." [Wikipedia:Helicis_minor] xref: FMA:48971 is_a: UBERON:0001596 {source="FMA"} ! intrinsic auricular muscle relationship: part_of UBERON:0001757 {source="FMA"} ! pinna [Term] id: UBERON:0008605 name: tragicus def: "The Tragicus is a short, flattened vertical band on the lateral surface of the tragus." [Wikipedia:Tragicus] xref: FMA:48974 is_a: UBERON:0001596 {source="FMA"} ! intrinsic auricular muscle relationship: part_of UBERON:0001757 {source="FMA"} ! pinna [Term] id: UBERON:0008606 name: antitragicus def: "The Antitragicus arises from the outer part of the antitragus, and is inserted into the cauda helicis and antihelix." [Wikipedia:Antitragicus] xref: FMA:48980 is_a: UBERON:0001596 {source="FMA"} ! intrinsic auricular muscle relationship: part_of UBERON:0001757 {source="FMA"} ! pinna [Term] id: UBERON:0008607 name: transverse muscle of auricle def: "The transverse muscle of auricle is placed on the cranial surface of the pinna. It consists of scattered fibers, partly tendinous and partly muscular, extending from the eminentia conchae to the prominence corresponding with the scapha." [Wikipedia:Transverse_muscle_of_auricle] synonym: "transverse muscle of pinna" EXACT [FMA:48983] synonym: "transversus auriculae" EXACT [Wikipedia:Transverse_muscle_of_auricle] synonym: "transversus auricularis" EXACT [FMA:48983] xref: FMA:48983 is_a: UBERON:0001596 {source="FMA"} ! intrinsic auricular muscle relationship: part_of UBERON:0001757 {source="FMA"} ! pinna [Term] id: UBERON:0008608 name: oblique muscle of auricle def: "The oblique muscle of auricle, on the cranial surface, consists of a few fibers extending from the upper and back part of the concha to the convexity immediately above it." [Wikipedia:Oblique_muscle_of_auricle] synonym: "oblique muscle of pinna" EXACT [FMA:48986] synonym: "obliquus auricul%c3%a6" RELATED [Wikipedia:Oblique_muscle_of_auricle] synonym: "obliquus auriculae" EXACT [Wikipedia:Oblique_muscle_of_auricle] synonym: "obliquus auricularis muscle" EXACT [FMA:48986] xref: FMA:48986 xref: SCTID:244768006 is_a: UBERON:0001596 {source="FMA"} ! intrinsic auricular muscle relationship: part_of UBERON:0001757 {source="FMA"} ! pinna [Term] id: UBERON:0008609 name: transversus menti def: "The transversus menti, or transverse muscle of the chin, is a facial muscle that is often considered to be the superficial fibers of the depressor anguli oris muscle which cross to the other side of the face." [Wikipedia:Transverse_muscle_of_the_chin] synonym: "transverse menti" EXACT [FMA:49080] synonym: "transversus menti" RELATED [Wikipedia:Transverse_muscle_of_the_chin] xref: FMA:49080 is_a: UBERON:0001577 {source="FMA"} ! muscle of face [Term] id: UBERON:0008611 name: scalene muscle def: "The scalene muscles (from greek ON:N1N;N7N=OO, \"skew\") are a group of three pairs of muscles in the lateral neck, namely the scalenus anterior, scalenus medius, and scalenus posterior. They are innervated by the spinal nerves C4-C8." [Wikipedia:Scalene_muscles] synonym: "lateral cervical muscle" RELATED [Wikipedia:Scalene_muscles] synonym: "lateral cervical muscles" RELATED [Wikipedia:Scalene_muscles] synonym: "lateral vertebral muscle" RELATED [Wikipedia:Scalene_muscles] synonym: "m scalenus" RELATED [Wikipedia:Scalene_muscles] synonym: "scalene muscle" RELATED [Wikipedia:Scalene_muscles] synonym: "scalene muscles" EXACT [Wikipedia:Scalene_muscles] synonym: "scalenes" RELATED [Wikipedia:Scalene_muscles] synonym: "scaleni" RELATED [Wikipedia:Scalene_muscles] synonym: "scalenus" RELATED [Wikipedia:Scalene_muscles] synonym: "scalenus muscle" EXACT [FMA:64829] xref: FMA:64829 xref: ncithesaurus:Scalene_Muscle xref: SCTID:244843003 is_a: UBERON:0002377 {source="FMA"} ! muscle of neck [Term] id: UBERON:0008612 name: muscle of pelvic diaphragm def: "The pelvic floor or pelvic diaphragm is composed of muscle fibers of the levator ani, the coccygeus, and associated connective tissue which span the area underneath the pelvis. The pelvic diaphragm is a muscular partition formed by the levatores ani and coccygei, with which may be included the parietal pelvic fascia on their upper and lower aspects. The pelvic floor separates the pelvic cavity above from the perineal region below. The right and left levator ani lie almost horizontally in the floor of the pelvis, separated by a narrow gap that transmits the urethra, vagina, and anal canal. The levator ani is usually considered in three parts: pubococcygeus, puborectalis, and iliococcygeus. The pubococcygeus, the main part of the levator, runs backward from the body of the pubis toward the coccyx and may be damaged during parturition. Some fibers are inserted into the prostate, urethra, and vagina. The right and left puborectalis unite behind the anorectal junction to form a muscular sling . Some regard them as a part of the sphincter ani externus. The iliococcygeus, the most posterior part of the levator ani, is often poorly developed. The coccygeus, situated behind the levator ani and frequently tendinous as much as muscular, extends from the ischial spine to the lateral margin of the sacrum and coccyx. The pelvic cavity of the true pelvis has the pelvic floor as its inferior border (and the pelvic brim as its superior border. ) The perineum has the pelvic floor as its superior border. Some sources do not consider \"pelvic floor\" and \"pelvic diaphragm\" to be identical, with the \"diaphragm\" consisting of only the levator ani and coccygeus, while the \"floor\" also includes the perineal membrane and deep perineal pouch. However, other sources include the fascia as part of the diaphragm. In practice, the two terms are often used interchangeably. Inferiorly, the pelvic floor extends into the anal triangle." [Wikipedia:Pelvic_floor] synonym: "diaphragm of the pelvis" RELATED [Wikipedia:Pelvic_floor] synonym: "muscle of pelvic floor" EXACT [FMA:64856] synonym: "pelvic diaphragm" RELATED [Wikipedia:Pelvic_floor] synonym: "pelvic diaphragm muscle" EXACT [FMA:64856] synonym: "pelvic floor muscles" RELATED [Wikipedia:Pelvic_floor] synonym: "pelvic muscles" RELATED [Wikipedia:Pelvic_floor] xref: FMA:64856 xref: ncithesaurus:Pelvic_Floor_Muscle is_a: UBERON:0001325 {source="FMA"} ! muscle of pelvis [Term] id: UBERON:0008617 name: innermost intercostal muscle def: "The Innermost intercostal muscle is a layer of intercostal muscle beneath the intercostal nerves and internal intercostal muscles. These are divided into transversus thoracis anteriorly, lateral muscle slips laterally and subcostalis posteriorly." [Wikipedia:Innermost_intercostal_muscle] synonym: "musculus intercostalis intimus" RELATED [Wikipedia:Innermost_intercostal_muscle] xref: FMA:9758 xref: SCTID:368054008 is_a: UBERON:0001111 {source="FMA"} ! intercostal muscle [Term] id: UBERON:0008618 name: subcostal muscle def: "The Subcostales (Infracostales) consist of muscular and aponeurotic fasciculi, which are usually well-developed only in the lower part of the thorax; each originates from the inner surface of one rib, and is inserted into the inner surface of the second or third rib above, near its angle. Their fibers run in the same direction as those of the Intercostales interni." [Wikipedia:Subcostalis_muscle] synonym: "subcostal muscles" RELATED [Wikipedia:Subcostalis_muscle] synonym: "subcostales" RELATED [Wikipedia:Subcostalis_muscle] synonym: "subcostales muscle" RELATED [Wikipedia:Subcostalis_muscle] synonym: "subcostales muscles" RELATED [Wikipedia:Subcostalis_muscle] synonym: "subcostalis" RELATED [Wikipedia:Subcostalis_muscle] xref: FMA:9759 xref: SCTID:244914005 is_a: UBERON:0002426 {source="FMA"} ! chest muscle [Term] id: UBERON:0008622 name: scalenus anterior def: "The Scalenus anterior (Scalenus anticus), also known as anterior scalene muscle, lies deeply at the side of the neck, behind the Sternocleidomastoideus. It arises from the anterior tubercles of the transverse processes of the third, fourth, fifth, and sixth cervical vertebrC&, and descending, almost vertically, is inserted by a narrow, flat tendon into the scalene tubercle on the inner border of the first rib, and into the ridge on the upper surface of the rib in front of the subclavian groove." [Wikipedia:Scalenus_anterior] synonym: "anterior scalene" EXACT [Wikipedia:Scalenus_anterior] synonym: "scalenus anterior muscle" RELATED [Wikipedia:Scalenus_anterior] synonym: "scalenus anticus" RELATED [Wikipedia:Scalenus_anterior] xref: FMA:13385 is_a: UBERON:0008611 {source="FMA"} ! scalene muscle [Term] id: UBERON:0008712 name: stylohyoid def: "The stylohyoid muscle is a slender muscle, lying anterior, and superior of the posterior belly of the digastric muscle. It shares this muscle's innervation by the facial nerve." [Wikipedia:Stylohyoid_muscle] synonym: "stylohyoid" RELATED [Wikipedia:Stylohyoid_muscle] synonym: "stylohyoideus" RELATED [Wikipedia:Stylohyoid_muscle] synonym: "stylohyoideus muscle" RELATED [Wikipedia:Stylohyoid_muscle] synonym: "stylohyoideus muscles" RELATED [Wikipedia:Stylohyoid_muscle] xref: FMA:9625 is_a: UBERON:0008571 {source="FMA"} ! suprahyoid muscle [Term] id: UBERON:0008713 name: pectoral girdle and thoracic body wall skeletal muscle xref: EHDAA2:0001422 is_a: UBERON:0001134 ! skeletal muscle tissue [Term] id: UBERON:0008714 name: pre-muscle mass synonym: "pre muscle mass" EXACT [] synonym: "premuscle mass" EXACT [] is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0002385 ! muscle tissue is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue [Term] id: UBERON:0008715 name: muscle tissue of prostate synonym: "prostate gland muscle tissue" EXACT [OBOL:automatic] synonym: "prostate muscle tissue" EXACT [OBOL:automatic] xref: ncithesaurus:Prostatic_Muscular_Tissue is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002385 ! implied link automatically realized ! muscle tissue is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0002367 intersection_of: UBERON:0002385 ! muscle tissue intersection_of: part_of UBERON:0002367 ! prostate gland [Term] id: UBERON:0008716 name: hilum of kidney synonym: "renal hilum" EXACT [FMA:15610] xref: FMA:15610 xref: galen:HilumOfKidney xref: SCTID:279370006 is_a: UBERON:0004885 ! implied link automatically realized ! hilum is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0002113 intersection_of: UBERON:0004885 ! hilum intersection_of: part_of UBERON:0002113 ! kidney [Term] id: UBERON:0008772 name: proximal epiphysis of tibia synonym: "head of tibia" EXACT [FMA:33113] synonym: "proximal end of tibia" EXACT [FMA:33113] synonym: "upper end of tibia" EXACT [FMA:33113] xref: FMA:33113 xref: ncithesaurus:Head_of_the_Tibia xref: SCTID:302526005 is_a: UBERON:0004380 ! implied link automatically realized ! proximal epiphysis is_a: UBERON:0004383 ! implied link automatically realized ! epiphysis of tibia relationship: part_of UBERON:0000979 intersection_of: UBERON:0004380 ! proximal epiphysis intersection_of: part_of UBERON:0000979 ! tibia [Term] id: UBERON:0008775 name: proximal epiphysis of fibula synonym: "head of fibula" EXACT [FMA:33729] synonym: "proximal end of fibula" EXACT [FMA:33729] synonym: "upper end of fibula" EXACT [FMA:33729] xref: FMA:33729 xref: ncithesaurus:Head_of_the_Fibula xref: SCTID:182080006 is_a: UBERON:0004380 ! implied link automatically realized ! proximal epiphysis is_a: UBERON:0004388 ! implied link automatically realized ! epiphysis of fibula relationship: part_of UBERON:0001446 intersection_of: UBERON:0004380 ! proximal epiphysis intersection_of: part_of UBERON:0001446 ! fibula [Term] id: UBERON:0008776 name: inner cell mass derived hypoblast def: "The hypoblast is a tissue type that forms from the inner cell mass. It lies beneath the epiblast and consists of small cuboidal cells. Extraembryonic endoderm is derived from hypoblast." [Wikipedia:Hypoblast] subset: early_development xref: EHDAA2:0000796 is_a: UBERON:0000089 ! hypoblast relationship: adjacent_to UBERON:0002532 ! epiblast relationship: develops_from UBERON:0000087 {source="Wikipedia"} ! inner cell mass [Term] id: UBERON:0008777 name: hypaxial musclulature def: "trunk muscles that lie ventral to the horizontal septum of the vertebrae." [Wikipedia:Epaxial_and_Hypaxial_muscles] synonym: "hypaxial muscle" RELATED [XAO:0003228] xref: AAO:0000228 xref: XAO:0003228 is_a: UBERON:0004479 ! implied link automatically realized ! musculature of trunk relationship: develops_from UBERON:0003895 intersection_of: UBERON:0001015 ! musculature intersection_of: develops_from UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:0001774 {source="XAO"} ! muscle of trunk [Term] id: UBERON:0008778 name: epaxial musclulature def: "trunk muscles that lies dorsal to the horizontal septum." [Wikipedia:Epaxial_and_Hypaxial_muscles] synonym: "epaxial muscle" EXACT [XAO:0003229] xref: AAO:0000142 xref: XAO:0003229 is_a: UBERON:0004479 ! implied link automatically realized ! musculature of trunk relationship: develops_from UBERON:0003900 intersection_of: UBERON:0001015 ! musculature intersection_of: develops_from UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:0001774 {source="XAO"} ! muscle of trunk [Term] id: UBERON:0008779 name: subclavius def: "The Subclavius is a small triangular muscle, placed between the clavicle and the first rib. Along with the pectoralis major and pectoralis minor muscles, the subclavius muscle makes up the anterior wall of the axilla." [Wikipedia:Subclavius_muscle] synonym: "subclavicular muscle" RELATED [Wikipedia:Subclavius_muscle] xref: FMA:13410 xref: ncithesaurus:Subclavius is_a: UBERON:0001495 {source="FMA"} ! pectoral muscle [Term] id: UBERON:0008780 name: inner cell mass derived epiblast subset: early_development synonym: "embryonic epiblast" RELATED [MP:0003886] xref: EHDAA:42 xref: EHDAA:75 xref: EHDAA2:0000444 xref: EMAPA:16050 xref: ncithesaurus:Epiblast is_a: UBERON:0002532 ! implied link automatically realized ! epiblast relationship: develops_from UBERON:0000087 intersection_of: UBERON:0002532 ! epiblast intersection_of: develops_from UBERON:0000087 ! inner cell mass relationship: develops_from UBERON:0000087 {source="Wikipedia"} ! inner cell mass relationship: part_of UBERON:0000091 ! bilaminar disc [Term] id: UBERON:0008781 name: blastodisc derived epiblast comment: part of blastodisc in BTO; indirect development in ZFA: df DEL df deep blastomere isa blastomere po blastodisc subset: early_development xref: TAO:0000018 xref: ZFA:0000018 is_a: UBERON:0002532 ! implied link automatically realized ! epiblast relationship: develops_from UBERON:0004749 intersection_of: UBERON:0002532 ! epiblast intersection_of: develops_from UBERON:0004749 ! blastodisc relationship: develops_from UBERON:0004749 {source="Wikipedia"} ! blastodisc relationship: part_of UBERON:0002541 {source="ZFA"} ! germ ring [Term] id: UBERON:0008783 name: dorsal venous arch def: "The dorsal venous arch of the foot is a superficial vein that connects the small saphenous vein and the great saphenous vein. Anatomically, it is defined by where the dorsal veins of the first and fifth digit, respectively, meet the great saphenous vein and small saphenous vein." [Wikipedia:Dorsal_venous_arch_of_the_foot] synonym: "arcus venosus dorsalis pedis" EXACT [Wikipedia:Dorsal_venous_arch_of_the_foot] synonym: "dorsal venous arch of foot" EXACT [FMA:44356] xref: FMA:44356 xref: MA:0002110 xref: SCTID:231189006 is_a: UBERON:0001638 {source="MA"} ! vein [Term] id: UBERON:0008784 name: lower limb segment synonym: "free lower limb segment" EXACT [FMA:24877] synonym: "free lower limb subdivision" EXACT [FMA:24877] synonym: "segment of free lower limb" EXACT [FMA:24877] synonym: "subdivision of free lower limb" EXACT [FMA:24877] xref: FMA:24877 is_a: UBERON:0002529 ! implied link automatically realized ! limb segment relationship: part_of UBERON:0002103 intersection_of: UBERON:0002529 ! limb segment intersection_of: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0008785 name: upper limb segment synonym: "free upper limb segment" EXACT [FMA:24876] synonym: "free upper limb subdivision" EXACT [FMA:24876] synonym: "segment of free upper limb" EXACT [FMA:24876] synonym: "subdivision of free upper limb" EXACT [FMA:24876] xref: FMA:24876 is_a: UBERON:0002529 ! implied link automatically realized ! limb segment relationship: part_of UBERON:0002102 intersection_of: UBERON:0002529 ! limb segment intersection_of: part_of UBERON:0002102 ! forelimb [Term] id: UBERON:0008786 name: third trochanter def: "The upper part of the gluteal tuberosity is often elongated into a roughened crest, on which a more or less well-marked, rounded tubercle, the third trochanter, is occasionally developed." [Wikipedia:Third_trochanter] xref: FMA:75824 is_a: UBERON:0000980 {source="Wikipedia"} ! trochanter relationship: part_of UBERON:0004412 {source="FMA"} ! proximal epiphysis of femur [Term] id: UBERON:0008787 name: fourth trochanter def: "a knob-like feature on the medial side of the femur that serves as a muscle attachment." [Wikipedia:Fourth_trochanter] comment: The fourth trochanter first appeared in the Erythrosuchidae, large basal archosaurian predators of the early Triassic period. This seemingly insignificant detail may have made the evolution of dinosaurs possible (all early dinosaurs and many later ones were bipeds), and may also be connected with the ability of the archosaurs or their immediate ancestors to survive the catastrophic Permian-Triassic extinction event[WP]. is_a: UBERON:0000980 {source="Wikipedia"} ! trochanter [Term] id: UBERON:0008788 name: posterior cranial fossa def: "The infratentorial compartment that contains the CEREBELLUM and BRAIN STEM. It is formed by the posterior third of the superior surface of the body of the sphenoid (SPHENOID BONE), by the occipital, the petrous, and mastoid portions of the TEMPORAL BONE, and the posterior inferior angle of the PARIETAL BONE." [MESH:A.01.456.830.200, Wikipedia:Posterior_cranial_fossa] synonym: "posterior fossa" BROAD [ncithesaurus:Posterior] xref: FMA:54368 xref: GAID:85 xref: MESH:A.01.456.830.200 xref: ncithesaurus:Posterior_Fossa is_a: UBERON:0004704 ! bone fossa is_a: UBERON:0008789 ! implied link automatically realized ! cranial fossa relationship: part_of UBERON:0003128 ! cranium [Term] id: UBERON:0008789 name: cranial fossa def: "any of the three large depressions in the posterior, middle, and anterior aspects of the floor of the cranial cavity" [http://mw1.merriam-webster.com/medical/cranial%20fossa] comment: editor note - todo - review the relationships for this and its subclasses; the relation should be bounded rather than part of, and contains should be used for the brain parts contained by the fossae is_a: UBERON:0004704 ! implied link automatically realized ! bone fossa relationship: part_of UBERON:0003128 intersection_of: UBERON:0004704 ! bone fossa intersection_of: part_of UBERON:0003128 ! cranium [Term] id: UBERON:0008790 name: rugal fold def: "a ridge or fold, such as the rugae of the stomach, which are large folds in the mucous membrane of that organ." [http://medical-dictionary.thefreedictionary.com/Rugal+folds, Wikipedia:Rugae] synonym: "ruga" EXACT [Wikipedia:Rugae] synonym: "rugae" RELATED PLURAL [Wikipedia:Rugae] is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0000344 ! mucosa [Term] id: UBERON:0008791 name: rugal fold of stomach synonym: "gastric ruga(e)" EXACT [FMA:15106] synonym: "ruga of stomach" EXACT [FMA:15106] xref: FMA:15106 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0008790 ! implied link automatically realized ! rugal fold relationship: part_of UBERON:0000945 intersection_of: UBERON:0008790 ! rugal fold intersection_of: part_of UBERON:0000945 ! stomach [Term] id: UBERON:0008798 name: rugal fold of vagina synonym: "ruga of vagina" EXACT [FMA:19991] synonym: "vaginal ruga" EXACT [FMA:19991] xref: FMA:19991 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure is_a: UBERON:0008790 ! implied link automatically realized ! rugal fold relationship: part_of UBERON:0000996 intersection_of: UBERON:0008790 ! rugal fold intersection_of: part_of UBERON:0000996 ! vagina [Term] id: UBERON:0008799 name: transverse palatine fold def: "a masticatory vestige on the hard palate; one of several irregular, sometimes branching, crests of soft tissue that radiate from the region of the incisive papillae at their most anterior parts and extend a slight distance backward, crossing the hard palate and reaching laterally for variable distances." [http://www.drugs.com/dict/transverse-palatine-fold.html] comment: note that this class refers to the singular and the FMA class refers to the set. In future this class may be split. synonym: "palatine fold" EXACT [FMA:75652] synonym: "palatine rugae" EXACT PLURAL [FMA:75652] synonym: "plica palatina transversa" EXACT [http://www.drugs.com/dict/transverse-palatine-fold.html] synonym: "plicae palatinae transversae" EXACT [FMA:75652, FMA:TA] synonym: "ruga of palate" EXACT [UBERON:cjm] synonym: "ruga palatina" EXACT [http://www.drugs.com/dict/transverse-palatine-fold.html] synonym: "rugae of palate" EXACT PLURAL [UBERON:cjm] synonym: "rugae palatinae" EXACT PLURAL [FMA:75652, FMA:TA] synonym: "transverse palatine folds" EXACT PLURAL [FMA:75652] synonym: "transverse palatine folds set" EXACT PLURAL [FMA:75652] synonym: "transverse palatine ridge" EXACT [http://www.drugs.com/dict/transverse-palatine-fold.html] xref: FMA:75652 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0008790 ! implied link automatically realized ! rugal fold relationship: part_of UBERON:0003216 intersection_of: UBERON:0008790 ! rugal fold intersection_of: part_of UBERON:0003216 ! hard palate [Term] id: UBERON:0008800 name: parietal endoderm def: "primitive endoderm-derived tissue that lines the luminal surface of the mural trophectoderm[MP]" [MP:0011187, PMID:19201946] synonym: "distal endoderm" RELATED [EMAPA:16053] xref: EMAPA:16053 is_a: UBERON:0000478 ! extraembryonic structure is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: develops_from UBERON:0000417 {source="MP"} ! primitive endoderm [Term] id: UBERON:0008801 name: parotid gland primordium xref: EHDAA:9246 xref: EHDAA2:0001413 is_a: UBERON:0001048 {source="Obol"} ! primordium [Term] id: UBERON:0008802 name: cheek pouch def: "A pocketlike fold of skin in the cheeks of various animals, such as squirrels, gophers, and monkeys, that functions as a means of carrying food." [BTO:0002224] xref: BTO:0002224 xref: SCTID:31293007 is_a: UBERON:0000014 ! zone of skin is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0008803 ! implied link automatically realized ! skin of cheek relationship: part_of UBERON:0000165 ! mouth relationship: part_of UBERON:0001567 {source="BTO"} ! cheek [Term] id: UBERON:0008803 name: skin of cheek synonym: "cheek skin" EXACT [FMA:24759] xref: FMA:24759 xref: SCTID:181472009 is_a: UBERON:0001084 ! implied link automatically realized ! skin of head relationship: part_of UBERON:0001567 intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0001567 ! cheek [Term] id: UBERON:0008804 name: stylopharyngeus def: "The stylopharyngeus is a muscle in the head that stretches between the styloid process and the pharynx." [Wikipedia:Stylopharyngeus_muscle] synonym: "m stylopharyngeus" RELATED [Wikipedia:Stylopharyngeus_muscle] synonym: "musculus stylopharyngeus" RELATED [Wikipedia:Stylopharyngeus_muscle] synonym: "stylopharyngeus muscle" RELATED [Wikipedia:Stylopharyngeus_muscle] xref: FMA:46664 xref: ncithesaurus:Stylopharyngeus is_a: UBERON:0000933 {source="FMA"} ! pharyngeal muscle relationship: develops_from UBERON:0003114 {source="Wikipedia"} ! pharyngeal arch 3 [Term] id: UBERON:0008805 name: gingival groove def: "The gingival sulcus is an area of potential space between a tooth and the surrounding gingival tissue and is lined by sulcular epithelium. The depth of the sulcus (Latin for groove) is bounded by two entities: apically by the gingival fibers of the connective tissue attachment and coronally by the free gingival margin." [Wikipedia:Gingival_sulcus] synonym: "gingival sulcus" EXACT [FMA:74580] synonym: "sulcus gingivalis" EXACT [FMA:TA] xref: FMA:74580 xref: http://upload.wikimedia.org/wikipedia/commons/5/5e/Gingival_sulcus.PNG xref: SCTID:245753001 is_a: UBERON:0006800 ! implied link automatically realized ! anatomical line relationship: adjacent_to UBERON:0001091 relationship: adjacent_to UBERON:0001828 intersection_of: UBERON:0006800 ! anatomical line intersection_of: adjacent_to UBERON:0001091 ! calcareous tooth intersection_of: adjacent_to UBERON:0001828 ! gingiva [Term] id: UBERON:0008806 name: buccal funnel synonym: "suctorial disc" EXACT [] synonym: "suctorial disk" EXACT [] is_a: UBERON:0000166 ! oral opening [Term] id: UBERON:0008807 name: coagulating gland synonym: "anterior prostate gland" EXACT [EMAPA:29794] synonym: "prostate gland anterior lobe" RELATED [MA:0000402] xref: BTO:0000265 xref: EMAPA:29794 xref: MA:0000402 xref: ncithesaurus:Coagulating_Gland xref: SCTID:78779004 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005399 {source="BTO", source="MA"} ! male reproductive gland relationship: part_of UBERON:0002367 {not_supported_by="MA", source="EMAPA"} ! prostate gland [Term] id: UBERON:0008808 name: prostate gland dorsolateral lobe xref: MA:0001739 is_a: UBERON:0001328 {source="MA"} ! lobe of prostate [Term] id: UBERON:0008809 name: foramina of scarpa def: "In the maxilla, occasionally two additional canals are present in the middle line of the palatine process; they are termed the foramina of Scarpa, and when present transmit the nasopalatine nerves, the left passing through the anterior, and the right through the posterior canal." [Wikipedia:Foramina_of_Scarpa] synonym: "foramina of scarpa" RELATED [Wikipedia:Foramina_of_Scarpa] xref: Wikipedia:Foramina_of_Scarpa is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0005871 ! palatine process of maxilla relationship: surrounds UBERON:0008810 ! nasopalatine nerve [Term] id: UBERON:0008810 name: nasopalatine nerve def: "One branch of the posterior superior nasal branches (trigeminal, maxillary branch), longer and larger than the others, is named the nasopalatine nerve (sometimes called the long sphenopalatine nerve). It enters the nasal cavity through the sphenopalatine foramen, passes across the roof of the nasal cavity below the orifice of the sphenoidal sinus to reach the septum, and then runs obliquely downward and forward between the periosteum and mucous membrane of the lower part of the septum. It descends to the roof of the mouth through the incisive canal and communicates with the corresponding nerve of the opposite side and with the greater palatine nerve. It supplies the palatal structures around the upper central and lateral incisors and the canines (the upper front six teeth). It also furnishes a few filaments to the mucous membrane of the nasal septum. The medial superior posterior nasal branches of maxillary nerve usually branches from the nasopalatine nerve." [Wikipedia:Nasopalatine_nerve] synonym: "naso-palatine nerve" RELATED [Wikipedia:Nasopalatine_nerve] synonym: "nasopalatine" RELATED [Wikipedia:Nasopalatine_nerve] synonym: "nasopalatine nerves" RELATED [Wikipedia:Nasopalatine_nerve] synonym: "Scarpa's nerve" EXACT [FMA:52797] xref: FMA:52797 is_a: UBERON:0001021 ! nerve relationship: branch_of UBERON:0000377 {source="FMA"} ! maxillary nerve [Term] id: UBERON:0008811 name: intromittent organ def: "an external organ of a male organism that is specialized to deliver sperm during copulation. Intromittent organs are found most often in terrestrial species, as most aquatic species fertilize their eggs externally, although there are exceptions[WP]." [Wikipedia:Intromittent_organ] comment: this is a broad grouping class connecting a number of different analagous organs by their function. We place the insect aedeagus here rather than penis, although this is somewhat arbitrary given the broadness of the current definition subset: grouping_class subset: organ_slim synonym: "aedeagus" NARROW SENSU [FBbt:00004850] xref: AAO:0010255 xref: FBbt:00004850 xref: HAO:0000091 xref: TGMA:0000585 is_a: UBERON:0003133 ! reproductive organ is_a: UBERON:0003135 ! implied link automatically realized ! male reproductive organ relationship: part_of UBERON:0000079 ! male reproductive system [Term] id: UBERON:0008812 name: hemipenis def: "one of a pair of intromittent organs of male squamates. Hemipenes are usually held inverted, within the body, and are everted for reproduction via erectile tissue like that in the human penis. Only one is used at a time, and some evidence indicates males alternate use between copulations. The hemipenis itself has a variety of shapes, depending on species. Often the hemipenis bears spines or hooks, in order to anchor the male within the female. Some species even have forked hemipenes (each hemipenis has two tips). Due to being everted and inverted, hemipenes do not have a completely enclosed channel for the conduction of sperm, but rather a seminal groove which seals as the erectile tissue expands" [Wikipedia:Hemipenis] subset: organ_slim synonym: "hemipenes" RELATED PLURAL [Wikipedia:Hemipenis] is_a: UBERON:0008811 {source="Wikipedia"} ! intromittent organ [Term] id: UBERON:0008813 name: helicotrema def: "The part of the cochlear labyrinth where the scala tympani and the scala vestibuli meet. It is the main component of the cochlear apex. The hair cells in this area best detect low frequency sounds." [Wikipedia:Helicotrema] synonym: "apex of cochlea" BROAD [Wikipedia:Cochlea] synonym: "cochlear apex" BROAD [Wikipedia:Cochlea] synonym: "Scarpa's orifice" EXACT [FMA:61275] xref: FMA:61275 xref: ncithesaurus:Helicotrema xref: SCTID:279775003 is_a: UBERON:0000161 {source="FMA"} ! orifice is_a: UBERON:0005744 ! implied link automatically realized ! cranial conduit relationship: part_of UBERON:0002499 {source="Wikipedia"} ! cochlear labyrinth [Term] id: UBERON:0008814 name: pharyngeal system def: "A transient embryonic complex that is specific to vertebrates. It comprises the pharyngeal arches, bulges of tissues of mesoderm and neural crest derivation through which pass nerves and pharyngeal arch arteries. The arches are separated internally by pharyngeal pouches, evaginations of foregut endoderm, and externally by pharyngeal clefts, invaginations of surface ectoderm. The development of the system ends when the stucture it contributes to are forming: the thymus, thyroid, parathyroids, maxilla, mandible, aortic arch, cardiac outflow tract, external and middle ear." [GO:0060037, GOC:dph] synonym: "pharyngeal apparatus" EXACT [] synonym: "pharyngeal arches and clefts" RELATED [] xref: GO:0060037 xref: ncithesaurus:Pharyngeal_Apparatus is_a: UBERON:0002050 ! embryonic structure [Term] id: UBERON:0008815 name: pharyngeal slit def: "filter-feeding organs found in non-vertebrate chordates (lancelets and tunicates) and hemichordates living in aquatic environments. These repeated segments are controlled by similar developmental mechanisms." [Wikipedia:Pharyngeal_slit] subset: organ_slim is_a: UBERON:0000062 ! organ [Term] id: UBERON:0008816 name: embryonic head xref: FBbt:00000155 is_a: UBERON:0000033 ! implied link automatically realized ! head is_a: UBERON:0002050 ! implied link automatically realized ! embryonic structure relationship: part_of UBERON:0000922 intersection_of: UBERON:0000033 ! head intersection_of: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0008817 name: thymus primordium endoderm is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0000925 ! implied link automatically realized ! endoderm relationship: part_of UBERON:0005562 intersection_of: UBERON:0000925 ! endoderm intersection_of: part_of UBERON:0005562 ! thymus primordium relationship: develops_from UBERON:0007124 {source="PMID:16313389"} ! pharyngeal pouch 3 [Term] id: UBERON:0008818 name: superior mediastinum def: "The superior mediastinum is that portion of the interpleural space which lies between the manubrium sterni in front, and the upper thoracic vertebrae behind." [Wikipedia:Superior_mediastinum] synonym: "superior mediastinal part of chest" EXACT [FMA:9827] xref: FMA:9827 xref: ncithesaurus:Superior_Mediastinum xref: SCTID:362687003 is_a: UBERON:0002224 ! thoracic cavity relationship: part_of UBERON:0003728 {source="FMA"} ! mediastinum [Term] id: UBERON:0008819 name: inferior mediastinum def: "Anterior, middle and posterior mediastinum." [Wikipedia:Inferior_mediastinum] synonym: "inferior mediastinal part of chest" EXACT [FMA:9828] xref: FMA:9828 xref: SCTID:243950006 is_a: UBERON:0002224 ! thoracic cavity relationship: part_of UBERON:0001443 {source="FMA-propagated"} ! chest relationship: part_of UBERON:0003728 {source="FMA"} ! mediastinum [Term] id: UBERON:0008820 name: anterior mediastinum def: "The anterior mediastinum exists only on the left side where the left pleura diverges from the mid-sternal line. It is narrow, above, but widens out a little below." [Wikipedia:Anterior_mediastinum] synonym: "anterior mediastinal part of chest" EXACT [FMA:9838] xref: FMA:9838 xref: ncithesaurus:Anterior_Mediastinum xref: SCTID:261048003 is_a: UBERON:0002224 ! thoracic cavity relationship: part_of UBERON:0008819 {source="FMA"} ! inferior mediastinum [Term] id: UBERON:0008821 name: middle mediastinum def: "The middle mediastinum is the broadest part of the interpleural space. It is made up of the pericardial sac and its contents." [Wikipedia:Middle_mediastinum] synonym: "middle mediastinal part of chest" EXACT [FMA:9839] xref: FMA:9839 xref: ncithesaurus:Middle_Mediastinum xref: SCTID:362688008 is_a: UBERON:0002224 ! thoracic cavity relationship: part_of UBERON:0008819 {source="FMA"} ! inferior mediastinum [Term] id: UBERON:0008822 name: posterior mediastinum def: "The posterior mediastinum is an irregular triangular space running parallel with the vertebral column." [Wikipedia:Posterior_mediastinum] synonym: "posterior mediastinal part of chest" EXACT [FMA:9840] xref: FMA:9840 xref: ncithesaurus:Posterior_Mediastinum xref: SCTID:243957009 is_a: UBERON:0002224 ! thoracic cavity relationship: part_of UBERON:0008819 {source="FMA"} ! inferior mediastinum [Term] id: UBERON:0008823 name: vertebrate brain comment: note that a reasoner should automatically classify all the vertebrate ontology brain classes here is_a: UBERON:0000489 {source="ZFA"} ! cavitated compound organ is_a: UBERON:0000955 ! implied link automatically realized ! brain relationship: develops_from UBERON:0001049 ! neural tube [Term] id: UBERON:0008824 name: duct of epididymis synonym: "epididymal duct" EXACT [MA:0001735] synonym: "epididymis duct" EXACT [FMA:18297] xref: FMA:18297 xref: MA:0001735 xref: ncithesaurus:Duct_of_the_Epididymis xref: SCTID:279623004 is_a: UBERON:0000058 {source="FMA"} ! duct is_a: UBERON:0005904 ! implied link automatically realized ! duct of male reproductive system relationship: part_of UBERON:0001301 intersection_of: UBERON:0000058 ! duct intersection_of: part_of UBERON:0001301 ! epididymis relationship: part_of UBERON:0001301 {source="FMA"} ! epididymis [Term] id: UBERON:0008826 name: pulmonary surfactant def: "Secretion produced by Type 2 pulmonary alveolar cell." [FMA:62780] synonym: "alveolar surfactant" EXACT [FMA:62780] synonym: "lung surfactant" EXACT [MA:0002534] xref: FMA:62780 xref: MA:0002534 xref: ncithesaurus:Lung_Surfactant is_a: UBERON:0006538 {source="MA"} ! respiratory system fluid/secretion [Term] id: UBERON:0008827 name: forestomach xref: MA:0001606 xref: ncithesaurus:Forestomach is_a: UBERON:0000064 ! organ part is_a: UBERON:0009034 ! implied link automatically realized ! stomach region relationship: part_of UBERON:0000945 {source="MA"} ! stomach [Term] id: UBERON:0008828 name: presphenoid bone def: "The anterior part of the body of the sphenoid bone in front of the basisphenoid. It is usually a separate bone in the young or fetus, but becomes a part of the sphenoid in the adult." [http://www.thefreedictionary.com/Presphenoid+bone, Wikipedia:Ossification_of_sphenoid#Presphenoid] comment: todo - account for developmental change synonym: "presphenoidal bone" EXACT [SCTID:95949009] xref: MA:0001470 xref: SCTID:95949009 is_a: UBERON:0003465 {source="MA"} ! chondrocranium bone relationship: part_of UBERON:0001677 {source="MA"} ! sphenoid bone [Term] id: UBERON:0008829 name: cerebellum external granule cell layer def: "transient layer of the cerebellar cortex present during development which is composed of dividing and migrating granule cells[MP]. The granule neurons migrate from the exterior layer to form an inner layer known as the internal granule layer. The external granular layer ceases to exist in the mature cerebellum, leaving only granule cells in the internal granule layer" [MP:0000874, Wikipedia:Anatomy_of_the_cerebellum#Development] xref: MA:0000994 xref: NIF_GrossAnatomy:birnlex_797 is_a: UBERON:0002956 {source="MA"} ! granular layer of cerebellar cortex [Term] id: UBERON:0008830 name: cerebellum internal granule cell layer xref: MA:0000995 xref: ncithesaurus:Internal_Granular_Layer_of_the_Cerebellum xref: NIF_GrossAnatomy:birnlex_790 is_a: UBERON:0002956 {source="MA"} ! granular layer of cerebellar cortex [Term] id: UBERON:0008831 name: inner spiral sulcus def: "a concavity in the floor of the cochlear duct formed by the overhanging vestibular lip." [http://www.drugs.com/dict/inner-spiral-sulcus.html] comment: part_of spiral sulcus in MA synonym: "internal spiral sulcus" EXACT [MA:0001197] synonym: "sulcus spiralis internus" EXACT [http://www.drugs.com/dict/inner-spiral-sulcus.html] xref: FMA:77850 xref: MA:0001197 is_a: UBERON:0002277 {source="FMA"} ! spiral sulcus [Term] id: UBERON:0008832 name: outer spiral sulcus def: "a concavity in the outer wall of the cochlear duct between the spiral prominence and the spiral organ." [http://www.drugs.com/dict/outer-spiral-sulcus.html] comment: part_of spiral sulcus in MA synonym: "external spiral sulcus" EXACT [MA:0001196] synonym: "sulcus spiralis externus" EXACT [http://www.drugs.com/dict/outer-spiral-sulcus.html] xref: FMA:77851 xref: MA:0001196 is_a: UBERON:0002277 {source="FMA"} ! spiral sulcus [Term] id: UBERON:0008833 name: great auricular nerve def: "The great auricular nerve originates from the cervical plexus, composed of branches of spinal nerves C2 and C3. It provides sensory innervation for the skin over parotid gland and mastoid process, and both surfaces of the outer ear." [Wikipedia:Great_auricular_nerve] comment: todo - check MA grouping; in MA this is part_of pinna - should this be a different relationship? synonym: "auricular nerve" EXACT [MA:0001232] synonym: "great auricular" RELATED [Wikipedia:Great_auricular_nerve] synonym: "greater auricular nerve" RELATED [Wikipedia:Great_auricular_nerve] xref: FMA:6872 xref: MA:0001232 xref: SCTID:181110003 xref: Wikipedia:Great_auricular_nerve is_a: UBERON:0002003 {source="FMA"} ! peripheral nerve relationship: branch_of UBERON:0003725 {source="FMA"} ! cervical plexus [Term] id: UBERON:0008834 name: prostomium def: "The first body segment in annelids worms. It is in front of (but does not include) the mouth, being usually a small shelf- or lip-like extension over the dorsal side of the mouth. It sometimes bears antennae and eyes. By feeding, it often functions like a kind of overlip. The shape and composition of prostomium are important for annelid systematics." [Wikipedia:Prostomium] synonym: "acron" RELATED [BTO:0004198] xref: BTO:0004198 is_a: UBERON:0000914 ! organismal segment [Term] id: UBERON:0008835 name: hepatic diverticulum def: "The first morphological sign of the embryonic liver is the formation of the hepatic diverticulum, an out-pocket of thickened ventral foregut epithelium adjacent to the developing heart. The anterior portion of the hepatic diverticulum gives rise to the liver and intrahepatic biliary tree, while the posterior portion forms the gall bladder and extrahepatic bile duct." [http://www.stembook.org/node/512, Wikipedia:Hepatic_diverticulum] synonym: "liver diverticulum" EXACT [XAO:0000101] xref: AAO:0011057 xref: EHDAA:1530 xref: EHDAA2:0000740 xref: ncithesaurus:Hepatic_Diverticulum xref: XAO:0000101 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue is_a: UBERON:0007499 {source="EHDAA2"} ! epithelial sac is_a: UBERON:0009497 ! implied link automatically realized ! epithelium of foregut-midgut junction is_a: UBERON:0009854 ! implied link automatically realized ! digestive tract diverticulum relationship: develops_from UBERON:0003894 {source="EHDAA2"} ! liver primordium relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0006235 {source="EHDAA2"} ! foregut-midgut junction [Term] id: UBERON:0008836 name: liver bud xref: BTO:0001642 is_a: UBERON:0005423 ! developing anatomical structure relationship: develops_from UBERON:0008835 {source="http://www.stembook.org/node/512"} ! hepatic diverticulum [Term] id: UBERON:0008837 name: palmar/plantar part of autopod is_a: UBERON:0002529 ! limb segment relationship: part_of UBERON:0002470 ! autopod [Term] id: UBERON:0008838 name: autopod pad synonym: "digital pad" RELATED [EMAPA:18489] synonym: "digital pads" RELATED PLURAL [EMAPA:18489] is_a: UBERON:0000014 ! zone of skin is_a: UBERON:0001419 ! implied link automatically realized ! skin of limb relationship: part_of UBERON:0002470 ! autopod [Term] id: UBERON:0008839 name: palmar pad comment: note that the EMAPA term refers to the plural synonym: "palmar pads" RELATED PLURAL [EMAPA:18489] xref: EMAPA:18489 is_a: UBERON:0000014 ! zone of skin is_a: UBERON:0001519 ! implied link automatically realized ! skin of hand relationship: part_of UBERON:0001519 {source="EMAPA"} ! skin of hand relationship: part_of UBERON:0008878 {source="cjm"} ! palmar part of hand [Term] id: UBERON:0008840 name: plantar pad synonym: "plantar pads" RELATED PLURAL [EMAPA:18507] xref: EMAPA:18507 is_a: UBERON:0000014 ! zone of skin is_a: UBERON:0001513 ! implied link automatically realized ! skin of foot relationship: part_of UBERON:0001513 {source="EMAPA"} ! skin of foot relationship: part_of UBERON:0008338 {source="cjm"} ! plantar part of foot [Term] id: UBERON:0008841 name: suspensory ligament def: "A ligament that supports a body part, especially an organ." [Wikipedia:Suspensory_ligament] is_a: UBERON:0008845 ! nonskeletal ligament [Term] id: UBERON:0008842 name: suspensory ligament of testis def: "The cranial atrophic portion of the urogenital ridge attached to the cranial pole of the intraabdominal embryonic testis" [http://www.medilexicon.com/medicaldictionary.php?t=49790, Wikipedia:Scrotal_ligament] is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue is_a: UBERON:0008841 {source="Obol"} ! suspensory ligament relationship: attached_to UBERON:0000473 intersection_of: UBERON:0008841 ! suspensory ligament intersection_of: attached_to UBERON:0000473 ! testis relationship: part_of UBERON:0004876 {source="Obol"} ! urogenital ridge [Term] id: UBERON:0008843 name: gubernaculum testis def: "The fetal ligament attached to the inferior end of the epididymis and testis and, at its other end, to the bottom of the scrotum; it is present during, and is thought to guide, the descent of the testis into the scrotum and then atrophies." [BTO:0002813] comment: The upper part of the gubernaculum degenerates; The lower part persists as the gubernaculum testis ("scrotal ligament"). This ligament secures the testis to the most inferior portion of the scrotum, tethering it in place and limiting the degree to which the testis can move within the scrotum[WP] synonym: "Hunter's gubernaculum" RELATED [BTO:0002813] xref: BTO:0002813 xref: EMAPA:19089 xref: FMA:20421 xref: SCTID:299983007 is_a: UBERON:0004346 ! implied link automatically realized ! gubernaculum relationship: part_of UBERON:0000079 intersection_of: UBERON:0004346 ! gubernaculum intersection_of: part_of UBERON:0000079 ! male reproductive system [Term] id: UBERON:0008844 name: gubernaculum (female) comment: The upper part of the gubernaculum, together with the ovarian artery and vein form the suspensory ligament of the ovary,[1] which suspends the ovary from the pelvic wall.; The lower gubernaculum has two vestigial remnants in females, the ovarian ligament and the round ligament of the uterus (ligamentum teres uteri) which respectively serve to support the ovaries and uterus in the pelvis is_a: UBERON:0004346 ! implied link automatically realized ! gubernaculum relationship: part_of UBERON:0000474 intersection_of: UBERON:0004346 ! gubernaculum intersection_of: part_of UBERON:0000474 ! female reproductive system [Term] id: UBERON:0008845 name: nonskeletal ligament def: "Ligament organ that primarily consists of dense connective tissue aggregated into fasciculi which may be admixed with smooth muscle. Examples: ligament of liver, ovarian ligament." [FMA:25625] xref: FMA:25625 xref: MA:0003004 xref: SCTID:410746001 is_a: UBERON:0000211 {source="FMA"} ! ligament disjoint_from: UBERON:0008846 ! skeletal ligament [Term] id: UBERON:0008846 name: skeletal ligament def: "Ligament organ that primarily consists of regular dense connective tissue aggregated into fasciculi; connects bone and cartilage organs. Examples: sutural ligament, ligament of pinna, tarsal ligament." [FMA:25624] synonym: "articular larua" EXACT [Wikipedia:Ligament] synonym: "articular ligament" EXACT [Wikipedia:Ligament] synonym: "fibrous ligament" RELATED [Wikipedia:Ligament] synonym: "ligament" BROAD [VAO:0000072, ZFA:0001675] synonym: "true ligament" EXACT [Wikipedia:Ligament] xref: AAO:0010444 xref: AEO:0000090 xref: EHDAA2:0003232 xref: EV:0100144 xref: FMA:25624 xref: GAID:118 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9a/Knee_diagram.svg/200px-Knee_diagram.svg.png xref: MA:0003005 xref: MESH:A.02.513 xref: SCTID:410744003 xref: TAO:0001682 xref: VAO:0000072 xref: ZFA:0001675 is_a: UBERON:0000211 {source="FMA"} ! ligament is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001434 intersection_of: UBERON:0000211 ! ligament intersection_of: part_of UBERON:0001434 ! skeletal system [Term] id: UBERON:0008847 name: ovarian ligament def: "a fibrous ligament that connects the ovary to the lateral surface of the uterus." [Wikipedia:Ovarian_ligament] comment: The ligament runs in the broad ligament of the uterus, which is a fold of peritoneum rather than a fibrous ligament. Specifically, it is located in the parametrium synonym: "ligament of ovary" EXACT [FMA:55422] synonym: "ligamentum ovarii proprium" EXACT [FMA:TA] synonym: "proper ovarian ligament" EXACT [FMA:55422] xref: FMA:55422 xref: SCTID:279915004 is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0008845 {source="FMA"} ! nonskeletal ligament relationship: attached_to UBERON:0000992 ! female gonad relationship: attached_to UBERON:0000995 ! uterus relationship: develops_from UBERON:0004346 {source="Wikipedia"} ! gubernaculum [Term] id: UBERON:0008848 name: cranial suspensory ligament def: "Connects the cranial tip of the future gonad to the dorsocranial abdominal cavity." [] comment: todo - check - add cranial ovarian susp ligaments xref: EMAPA:30068 is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure is_a: UBERON:0008841 {source="Obol"} ! suspensory ligament relationship: part_of UBERON:0003135 {source="EMAPA"} ! male reproductive organ [Term] id: UBERON:0008851 name: ectoplacental cavity def: "closed space within the ectoplacental cone, formed by the fusion of the parts of the amniotic fold that separate it from the amniotic cavity[MP]. a developmental cavity that exists in some mammals and is derived by division of the proamniotic space; it is further removed from the embryo than the amniotic cavity in some mammals" [http://www.medilexicon.com/medicaldictionary.php?s=epamniotic+cavity, MP:0011207] synonym: "epamniotic cavity" EXACT [http://www.medilexicon.com/medicaldictionary.php?s=epamniotic+cavity] xref: EMAPA:16080 is_a: UBERON:0002553 {source="EMAPA"} ! anatomical cavity relationship: surrounded_by UBERON:0004364 ! ectoplacental cone [Term] id: UBERON:0008852 name: visceral yolk sac def: "extraembryonic tissue membrane, formed from the visceral endoderm and the extraembryonic mesoderm, which is located ventral to the embryonic disc and is connected to the presumptive midgut of the embryo; the yolk that it contains is the site of embryonic hematopoiesis and vitelline circulation is involved in early embryonic circulation; it is the origin of the primordial germ cells" [MP:0001718] comment: TODO - check synonym: "secondary yolk sac" EXACT [MP:0001718] synonym: "umbilical vesicle" EXACT [MP:0001718] synonym: "vitelline sac" EXACT [MP:0001718] synonym: "yolk sac" BROAD [MP:0001718] is_a: UBERON:0001040 ! yolk sac [Term] id: UBERON:0008853 name: abnormal parietal yolk sac morphology def: "tissue that consists of two cellular layers (parietal endoderm and trophoblast) separated by a relatively thick nonvascular basement membrane (Reichert's membrane), and acts as a protective layer to supports and facilitates transport of nutrients between the uterine tissue and the yolk sac cavity." [MP:0011203, PMID:1150659, PMID:21123814] synonym: "primary yolk sac" EXACT [MP:0011203] xref: EHDAA2:0003237 is_a: UBERON:0001040 ! yolk sac [Term] id: UBERON:0008854 name: root of molar tooth def: "the part of a molar tooth that is implanted in the gum; mandibular and maxillary molars usually have two and three roots, respectively." [MP:0011165] synonym: "molar root" EXACT [FMA:85302] synonym: "molar tooth root" EXACT [FMA:85302] xref: FMA:85302 is_a: UBERON:0003677 {source="FMA"} ! tooth root relationship: part_of UBERON:0003655 intersection_of: UBERON:0003677 ! tooth root intersection_of: part_of UBERON:0003655 ! molar tooth [Term] id: UBERON:0008855 name: placenta metrial gland def: "group of granular epithelial cells in the uterine muscle beneath the placenta that develops during pregnancy in rodents and some other species." [MP:0010777] subset: organ_slim xref: MA:0001723 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002530 ! gland is_a: UBERON:0005398 ! implied link automatically realized ! female reproductive gland relationship: part_of UBERON:0002450 {source="MP"} ! decidua [Term] id: UBERON:0008856 name: stomach muscularis externa def: "the smooth muscle layer of the stomach wall that functions to churn and mix food and gastric secretions as well as to move food along the digestive tract to the intestines" [MP:0010779] comment: todo - logical def synonym: "gastric muscularis" EXACT [FMA:14909] synonym: "muscularis externa of stomach" EXACT [FMA:14909] synonym: "tunica muscularis (gaster)" EXACT [FMA:14909] xref: FMA:14909 xref: SCTID:362132003 is_a: UBERON:0001135 {source="MP"} ! smooth muscle tissue is_a: UBERON:0004222 ! implied link automatically realized ! stomach smooth muscle is_a: UBERON:0006660 ! implied link automatically realized ! muscle layer relationship: part_of UBERON:0001167 intersection_of: UBERON:0006660 ! muscle layer intersection_of: part_of UBERON:0001167 ! wall of stomach relationship: part_of UBERON:0001167 {source="FMA"} ! wall of stomach [Term] id: UBERON:0008857 name: stomach smooth muscle circular layer def: "the middle layer of the muscularis; it is continuous with the circular layer of the esophagus, but is absent in the fundus and lies concentric to the longitudinal axis of the stomach; the circular layer is normally tonically constricted forming a functional pyloric sphincter, which controls the movement of chyme into the duodenum" [MP:0010780] comment: todo - check synonym: "circular layer of gastric muscularis" EXACT [FMA:14911] synonym: "stratum circulare (tunica muscularis)(gaster)" EXACT [FMA:14911] xref: FMA:14911 xref: MA:0001628 xref: SCTID:2746007 is_a: UBERON:0001135 {source="MP"} ! smooth muscle tissue is_a: UBERON:0004222 ! implied link automatically realized ! stomach smooth muscle relationship: part_of UBERON:0008856 ! stomach muscularis externa [Term] id: UBERON:0008858 name: pyloric canal def: "the short narrow part of the stomach extending from the pyloric antrum to the pyloric sphincter" [MP:0010791] xref: FMA:14580 xref: SCTID:245417002 is_a: UBERON:0009870 {source="FMA"} ! zone of stomach [Term] id: UBERON:0008859 name: cardiac gastric gland def: "the gastric glands in the cardiac region of the stomach; cardiac glands are fewer in number than in the fundus and body, and secrete mucin which coats the stomach and protects it" [MP:0010795] subset: organ_slim synonym: "fundic gland" EXACT [MP:0010795] xref: FMA:14920 xref: ncithesaurus:Fundic_Gland xref: SCTID:8894005 is_a: UBERON:0000325 {source="Obol"} ! gastric gland is_a: UBERON:0003294 ! implied link automatically realized ! gland of foregut relationship: part_of UBERON:0001160 {source="MP"} ! fundus of stomach [Term] id: UBERON:0008860 name: intermediate gastric gland def: "any of the branched tubular glands in the mucosa of the fundus and body of the stomach that secrete most of the digestive substances secreted by the stomach" [MP:0010796] is_a: UBERON:0000325 {source="Obol"} ! gastric gland is_a: UBERON:0003294 ! implied link automatically realized ! gland of foregut relationship: part_of UBERON:0001160 {source="MP"} ! fundus of stomach [Term] id: UBERON:0008861 name: pyloric gastric gland def: "the gastric glands in the pyloric region of the stomach; the pyloric glands secrete mucin, which coats the stomach and protects it, and hormones such as gastrin and enkephalin[MP]." [MP:0010797, Wikipedia:Pyloric_gland] synonym: "pyloric gland" EXACT [FMA:14922] xref: FMA:14922 xref: http://upload.wikimedia.org/wikipedia/commons/b/bf/Gray1054.png xref: SCTID:70710007 is_a: UBERON:0000325 {source="FMA"} ! gastric gland is_a: UBERON:0003294 ! implied link automatically realized ! gland of foregut relationship: part_of UBERON:0004997 {source="FMA"} ! mucosa of pyloric antrum [Term] id: UBERON:0008862 name: stomach smooth muscle inner oblique layer def: "the innermost layer of the muscularis; it is not present in all sections of the stomach but is clearly seen in the fundus and near the lesser curvature of the corpus; the oblique fibers disappear distally (towards the pyloric antrum); the oblique layer is responsible for creating the motion that churns and physically breaks down the food" [MP:0010804] is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002385 ! muscle tissue relationship: part_of UBERON:0008856 ! stomach muscularis externa [Term] id: UBERON:0008863 name: stomach smooth muscle outer longitudinal layer def: "the most superficial layer of the muscularis; it has two sections, a longitudinal layer that is common with the esophagus and ends in the corpus, and a longitudinal layer that originates in the corpus and spreads into the duodenum" [MP:0010805] is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002385 ! muscle tissue relationship: part_of UBERON:0008856 ! stomach muscularis externa [Term] id: UBERON:0008866 name: enamel knot def: "a transient cluster of cells in the central part of the dental epithelium facing the dental mesenchyme, which acts as an organizing center, providing positional information for tooth morphogenesis and regulating the growth of tooth cusps" [MP:0010864] is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0003843 ! tooth epithelium relationship: part_of UBERON:0005176 {source="MP"} ! tooth enamel organ [Term] id: UBERON:0008867 name: trabecular network of bone def: "the network of intersecting plates and spicules in cancellous bone which form a meshwork of intercommunicating spaces filled with blood vessels and marrow; in mature bone, the trabeculae are aligned in parallel with the lines of major compressive or tensile force" [MP:0010867] synonym: "bone trabecula" RELATED [MP:0010867] synonym: "bone trabeculae" RELATED [MP:0010867] xref: MP:0010867 xref: ncithesaurus:Bone_Trabeculae is_a: UBERON:0000479 ! tissue is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0002483 {source="MP"} ! trabecular bone tissue [Term] id: UBERON:0008870 name: pulmonary alveolar parenchyma def: "the distinguishing cell types of the lung alveolar tissue, including pulmonary epithelial cells (pneumocytes), alveolar capillary endothelial cells, interstitial cells (fibroblasts) and alveolar macrophages" [MP:0010901] is_a: UBERON:0000061 {source="MP"} ! anatomical structure is_a: UBERON:0008946 ! implied link automatically realized ! lung parenchyma relationship: part_of UBERON:0002299 intersection_of: UBERON:0000353 ! parenchyma intersection_of: part_of UBERON:0002299 ! alveolus of lung [Term] id: UBERON:0008872 name: pulmonary alveolus wall def: "." [MP:0010903] is_a: UBERON:0000061 {source="MP"} ! anatomical structure is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0002299 ! alveolus of lung [Term] id: UBERON:0008873 name: alveolar pore def: "the openings in the alveolar septum that permit air flow between adjacent alveoli" [MP:0010904] is_a: UBERON:0000061 {source="MP"} ! anatomical structure is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0002299 ! alveolus of lung [Term] id: UBERON:0008874 name: pulmonary acinus def: "the part of the airway consisting of a respiratory bronchiole and all of its branches" [MP:0010911, Wikipedia:Acinus#The_Lungs] synonym: "primary pulmonary lobule" EXACT [FMA:7313] xref: FMA:7313 xref: ncithesaurus:Pulmonary_Acinus xref: SCTID:361365004 is_a: UBERON:0000061 {source="MP"} ! anatomical structure is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0002048 ! lung [Term] id: UBERON:0008875 name: hypodermis fat layer def: "the superficial portion of the subcutaneous tissue which is specialized for fat storage" [MP:0011156] is_a: UBERON:0002190 {source="MP"} ! subcutaneous adipose tissue relationship: part_of UBERON:0002072 ! hypodermis [Term] id: UBERON:0008876 name: hypodermis muscle layer def: "the skeletal muscle layer in the superficial fascia" [MP:0011157] is_a: UBERON:0001134 ! skeletal muscle tissue relationship: part_of UBERON:0002190 {source="MP"} ! subcutaneous adipose tissue [Term] id: UBERON:0008877 name: epidermal-dermal junction def: "the multi-layer basement membrane between the dermis and epidermis that serves to adhere the dermis and epidermis, provide mechanical support for the epidermis, and forms a barrier to cells and large molecules across the junction" [MP:0011159] synonym: "dermal-epidermal junction" EXACT [FMA:70963] xref: FMA:70963 is_a: UBERON:0005769 ! basement membrane relationship: adjacent_to UBERON:0001003 ! epidermis relationship: adjacent_to UBERON:0002067 ! dermis relationship: part_of UBERON:0000014 {source="MP"} ! zone of skin [Term] id: UBERON:0008878 name: palmar part of hand synonym: "front of hand" EXACT [FMA:24920] synonym: "palm" EXACT [FMA:24920] synonym: "palm of hand" EXACT [FMA:24920] synonym: "palmar region" EXACT [FMA:24920] synonym: "regio palmaris" EXACT [FMA:TA] xref: FMA:24920 xref: ncithesaurus:Palmar_Region is_a: UBERON:0005451 {source="FMA"} ! segment of hand is_a: UBERON:0008837 ! palmar/plantar part of autopod [Term] id: UBERON:0008879 name: ligament of pinna comment: subclasses (anterior, superior, posterior) can be added on request synonym: "auricular ligament" EXACT [MA:0001228] synonym: "ligament of auricle" EXACT [FMA:61035] synonym: "pinna ligament" EXACT [FMA:61035] xref: FMA:61035 xref: MA:0001228 xref: SCTID:362548009 is_a: UBERON:0003566 ! implied link automatically realized ! head connective tissue is_a: UBERON:0008846 {source="FMA"} ! skeletal ligament relationship: part_of UBERON:0001757 {source="MA"} ! pinna [Term] id: UBERON:0008880 name: annelid pygidium def: "Rearmost segment of annelid worms." [Wikipedia:Annelid#Segmentation] is_a: UBERON:0000914 ! organismal segment [Term] id: UBERON:0008881 name: rostral migratory stream def: "Unique telencephalic subventricular zones that extend from the lateral ventricles into the olfactory bulbs. Newly produced GABAergic interneurons migrate along the RMS and settle in the bulb[NIF]. In rodents, the anterior region of the SVZ produces neuroblasts that migrate in chain toward the olfactory bulb along the so-called rostral migratory stream (RMS)[BTO]. the transient structure formed by neurons migrating from the subventricular zone into the olfactory bulbs[MP] he rostral migratory stream (RMS) or rostral migratory pathway is a pathway, found in the brain of some animals, along which neuronal precursors that originated in the subventricular zone (SVZ) of the brain migrate to reach the main olfactory bulb, where they differentiate into interneurons. Neurogenesis has been shown to occur in the SVZ into adulthood[WP]" [[Wikipedia:Rostral_migratory_stream, MP:0004279, NIF_GrossAnatomy:birnlex_1702, PMID:12453055] synonym: "RMS" RELATED [BTO:0003412] synonym: "rostral migratory pathway" RELATED [Wikipedia:Rostral_migratory_stream] xref: BTO:0003412 xref: NIF_GrossAnatomy:birnlex_1702 is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon relationship: overlaps UBERON:0002264 {source="MP-modified"} ! olfactory bulb relationship: part_of UBERON:0001870 {source="BTO"} ! frontal cortex relationship: part_of UBERON:0002285 {source="BTO"} ! lateral ventricle [Term] id: UBERON:0008882 name: spinal cord commissure def: "The nerve fiber tracts that span the midline of the spinal cord" [MP:0009694] is_a: UBERON:0001020 ! implied link automatically realized ! commissure relationship: part_of UBERON:0002240 intersection_of: UBERON:0001020 ! commissure intersection_of: part_of UBERON:0002240 ! spinal cord [Term] id: UBERON:0008883 name: osteoid def: "unmineralized, organic portion of the bone matrix that forms prior to the maturation of bone tissue. Osteoblasts begin the process of forming bone tissue by secreting the osteoid as several specific proteins. When the osteoid becomes mineralized, it and the adjacent bone cells have developed into new bone tissue" [Wikipedia:Osteoid] comment: request from GO? synonym: "prebone tissue" EXACT [FMA:66830] xref: FMA:66830 xref: ncithesaurus:Osteoid xref: XAO:0004035 is_a: UBERON:0004755 ! skeletal tissue relationship: part_of UBERON:0002481 ! bone tissue [Term] id: UBERON:0008884 name: left putamen xref: FMA:72829 is_a: UBERON:0001874 ! implied link automatically realized ! putamen relationship: part_of UBERON:0002812 intersection_of: UBERON:0001874 ! putamen intersection_of: part_of UBERON:0002812 ! left cerebral hemisphere [Term] id: UBERON:0008885 name: right putamen xref: FMA:72828 is_a: UBERON:0001874 ! implied link automatically realized ! putamen relationship: part_of UBERON:0002813 intersection_of: UBERON:0001874 ! putamen intersection_of: part_of UBERON:0002813 ! right cerebral hemisphere [Term] id: UBERON:0008886 name: pulmonary vascular system def: "Subdivision of cardiovascular system which has as its parts the pulmonary arterial and venous tree organs." [FMA:45621, Wikipedia:Pulmonary_circulation] synonym: "pulmonary circulatory system" EXACT [FMA:45621] xref: FMA:45621 is_a: UBERON:0007798 {source="Obol"} ! vascular system relationship: part_of UBERON:0004535 {source="FMA"} ! cardiovascular system [Term] id: UBERON:0008887 name: rectal venous plexus def: "The hemorrhoidal plexus (or rectal venous plexus) surrounds the rectum, and communicates in front with the vesical venous plexus in the male, and the uterovaginal plexus in the female. A free communication between the portal and systemic venous systems is established through the hemorrhoidal plexus." [Wikipedia:Rectal_venous_plexus] synonym: "haemorrhoidal plexus" RELATED [Wikipedia:Rectal_venous_plexus] synonym: "hemorrhoidal plexus" RELATED [Wikipedia:Rectal_venous_plexus] xref: FMA:18933 xref: ncithesaurus:Hemorrhoidal_Plexus is_a: UBERON:0001593 {source="FMA"} ! venous plexus relationship: surrounds UBERON:0001052 intersection_of: UBERON:0001593 ! venous plexus intersection_of: surrounds UBERON:0001052 ! rectum [Term] id: UBERON:0008888 name: vesical venous plexus def: "The vesical plexus envelops the lower part of the bladder and the base of the prostate and communicates with the pudendal and prostatic plexuses. It is drained, by means of several vesical veins, into the hypogastric veins." [Wikipedia:Vesical_venous_plexus] xref: FMA:18934 xref: SCTID:31510008 is_a: UBERON:0001593 {source="FMA"} ! venous plexus [Term] id: UBERON:0008889 name: uterine venous plexus def: "The uterine plexuses lie along the sides and superior angles of the uterus between the two layers of the broad ligament, and communicate with the ovarian and vaginal plexuses. They are drained by a pair of uterine veins on either side: these arise from the lower part of the plexuses, opposite the external orifice of the uterus, and open into the corresponding hypogastric vein." [Wikipedia:Uterine_venous_plexus] synonym: "uterine plexus" RELATED [Wikipedia:Uterine_venous_plexus] xref: FMA:29712 xref: SCTID:294553007 is_a: UBERON:0001593 {source="FMA"} ! venous plexus [Term] id: UBERON:0008891 name: external gill def: "External gills are the gills of an animal, most typically an amphibian, that are exposed to the environment, rather than set inside the pharynx and covered by gill slits, as they are in most fishes." [BTO:0004689] xref: AAO:0010174 xref: BTO:0004689 xref: XAO:0000120 is_a: UBERON:0002535 {source="BTO"} ! gill is_a: UBERON:0003102 {source="XAO"} ! surface structure [Term] id: UBERON:0008892 name: internal gill xref: AAO:0010176 is_a: UBERON:0002535 {source="AAO"} ! gill [Term] id: UBERON:0008894 name: gill precursor def: "A primordium or bud that develops into a gill." [] synonym: "gill primordium" EXACT [XAO:0000448] synonym: "internal gill bud" EXACT [ZFA:0001107] xref: XAO:0000448 xref: ZFA:0001107 is_a: UBERON:0001048 {source="XAO"} ! primordium relationship: develops_from UBERON:0003114 {source="XAO"} ! pharyngeal arch 3 relationship: develops_from UBERON:0003115 {source="XAO"} ! pharyngeal arch 4 relationship: develops_from UBERON:0004117 {source="ZFA"} ! pharyngeal pouch [Term] id: UBERON:0008895 name: pharyngeal arch skeleton comment: merge with viscerocranium? synonym: "branchial arch skeleton" RELATED [] synonym: "gill arch skeleton" RELATED [] is_a: UBERON:0000075 ! implied link automatically realized ! subdivision of skeletal system relationship: part_of UBERON:0002539 intersection_of: UBERON:0000075 ! subdivision of skeletal system intersection_of: part_of UBERON:0002539 ! pharyngeal arch [Term] id: UBERON:0008896 name: pharyngeal arch 3-7 synonym: "branchial arch" EXACT [ZFA:0001613] synonym: "branchial arches" EXACT PLURAL [ZFA:0001613] synonym: "branchial bar" EXACT [ZFA:0001613] synonym: "branchial bars" EXACT PLURAL [ZFA:0001613] synonym: "gill arch" EXACT [ZFA:0001613] synonym: "gill arches 1-5" EXACT [ZFA:0001613] synonym: "visceral arches 3-7" EXACT [ZFA:0001613] xref: AAO:0010362 xref: SCTID:308766004 xref: TAO:0001597 xref: XAO:0000099 xref: ZFA:0001613 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002539 {source="ZFA"} ! pharyngeal arch is_a: UBERON:0004185 ! implied link automatically realized ! endodermal gut relationship: part_of UBERON:0001042 {source="ZFA"} ! chordate pharynx [Term] id: UBERON:0008897 name: fin def: "An external membranous process of an aquatic animal as a fish used in propelling or guiding the body." [BTO:0004649, Wikipedia:Fin] xref: AAO:0010374 xref: BTO:0004649 xref: EFO:0000875 xref: MAT:0000087 xref: MIAA:0000087 xref: OpenCyc:Mx4rvVjcBZwpEbGdrcN5Y29ycA xref: SCTID:73003005 xref: TAO:0000108 xref: XAO:0000002 xref: ZFA:0000108 is_a: UBERON:0003102 ! surface structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: develops_from UBERON:0002531 ! fin bud [Term] id: UBERON:0008902 name: lateral recess of third vetricle def: "Lateral protrusion of the third ventricle." [ZFIN:curator] synonym: "lateral recess" BROAD PLURAL [ZFA:0000231] synonym: "lateral recess of diencephalic ventricle" EXACT [ZFIN:ZDB-PUB-091221-27] xref: TAO:0000231 xref: ZFA:0000231 is_a: UBERON:0000464 {source="ZFA"} ! anatomical space disjoint_from: UBERON:0007656 ! lateral recess of fourth ventricle relationship: part_of UBERON:0002286 {source="ZFA"} ! third ventricle [Term] id: UBERON:0008904 name: neuromast def: "Volcano-shaped lateral line sensory organ located in characteristic positions within the skin epithelium and containing hair cells and their support elements. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:ZDB-PUB-961014-576] synonym: "lateral line neuromast" EXACT [ZFA:0000243] synonym: "lateral line organ" EXACT [ZFA:0000243] synonym: "neuromasts" EXACT PLURAL [ZFA:0000243] xref: AAO:0001004 xref: TAO:0000243 xref: ZFA:0000243 is_a: UBERON:0000477 {source="ZFA"} ! anatomical cluster is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0002540 {source="ZFA"} ! lateral line system [Term] id: UBERON:0008906 name: lateral line nerve def: "Cranial nerves that carry afferent and efferent fibers for the lateral line system." [ZFIN:curator] synonym: "lateral line nerves" EXACT PLURAL [ZFA:0001479] xref: AAO:0010077 xref: TAO:0001479 xref: ZFA:0001479 is_a: UBERON:0001785 {source="AAO"} ! cranial nerve relationship: part_of UBERON:0002540 intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0002540 ! lateral line system relationship: develops_from UBERON:0009128 {source="NBK53175"} ! lateral line placode relationship: part_of UBERON:0002540 {source="ZFA"} ! lateral line system [Term] id: UBERON:0008907 name: dermal bone def: "Skeletal element that forms superficially in the organism, usually in association with the ectoderm." [VAO:0000130, VAO:curator] comment: todo xref: AAO:0010769 xref: VAO:0000130 xref: XAO:0004015 xref: ZFA:0001590 is_a: UBERON:0002514 {source="ZFA"} ! intramembranous bone is_a: UBERON:0007842 {source="VAO"} ! membrane bone [Term] id: UBERON:0008909 name: perichordal bone tissue def: "Replacement bone that forms within the connective tissue surrounding the notochord." [ZFIN:curator] comment: renamed to perichordal bone tissue synonym: "perichordal bone" RELATED [ZFA:0001629] synonym: "perichordal bones" EXACT PLURAL [ZFA:0001629] xref: AAO:0010777 xref: TAO:0001639 xref: ZFA:0001629 is_a: UBERON:0004763 {source="ZFA"} ! endochondral bone tissue [Term] id: UBERON:0008911 name: chondral bone tissue def: "Replacement bone that forms within or surrounding a cartilaginous skeletal element." [zfin:curator] comment: renamed to perichordal bone tissue synonym: "chondral bone" RELATED [ZFA:0001693] xref: AAO:0010774 xref: ZFA:0001693 is_a: UBERON:0004763 {source="ZFA"} ! endochondral bone tissue [Term] id: UBERON:0008913 name: perichondral bone tissue def: "Replacement bone that forms within the connective tissue surrounding cartilage." [ZFIN:curator] synonym: "perichondral bone" RELATED [ZFA:0001630] synonym: "perichondral bones" EXACT PLURAL [ZFA:0001630] xref: AAO:0010779 xref: TAO:0001638 xref: ZFA:0001630 is_a: UBERON:0008911 {source="ZFA"} ! chondral bone tissue relationship: develops_from UBERON:0002222 {source="ZFA"} ! perichondrium [Term] id: UBERON:0008915 name: pore def: "An anatomical space that is an opening, usually at the end of a canal or duct, on the surface of the integument or the lining of an internal anatomical space." [TAO:curator] xref: AAO:0010441 xref: TAO:0001791 xref: ZFA:0005449 is_a: UBERON:0000464 {source="ZFA"} ! anatomical space [Term] id: UBERON:0008917 name: ampullary organ def: "Organ that consists of receptor cells located within an epidermal invagination and functions as an electroreceptor." [TAO:wd] subset: organ_slim synonym: "ampullary electroreceptor organ" EXACT [TAO:0002104] xref: AAO:0001006 xref: TAO:0002104 is_a: UBERON:0000020 ! implied link automatically realized ! sense organ is_a: UBERON:0003103 {source="TAO"} ! compound organ is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0002540 ! lateral line system [Term] id: UBERON:0008918 name: ampulla of Lorenzini def: "The ampullae of Lorenzini are special sensing organs called electroreceptors, forming a network of jelly-filled pores... Each ampulla consists of a jelly-filled canal opening to the surface by a pore in the skin and ending blindly in a cluster of small pockets full of special jelly. The ampullae are mostly clustered into groups inside the body, each cluster having ampullae connecting with different parts of the skin, but preserving a left-right symmetry. The canal lengths vary from animal to animal, but the distribution of the pores is generally specific to each species. The ampullae pores are plainly visible as dark spots in the skin. They provide fish with a sixth sense capable of detecting electromagnetic fields as well as temperature gradients[WP]." [Wikipedia:Ampullae_of_Lorenzini] subset: organ_slim synonym: "ampullae of Lorenzini" EXACT PLURAL [Wikipedia:Ampullae_of_Lorenzini] xref: http://upload.wikimedia.org/wikipedia/commons/8/88/Electroreceptors_in_a_sharks_head.svg is_a: UBERON:0003103 ! compound organ is_a: UBERON:0008917 ! implied link automatically realized ! ampullary organ relationship: part_of UBERON:0002540 ! lateral line system [Term] id: UBERON:0008919 name: mesenchyme from somatopleure xref: EHDAA2:0001120 is_obsolete: true [Term] id: UBERON:0008920 name: mesenchyme from splanchnopleure xref: EHDAA2:0001122 is_obsolete: true [Term] id: UBERON:0008921 name: substratum of layer of retina def: "." [http://retina.anatomy.upenn.edu/~lance/eye/retina_gross.html, UBERON:CL_meeting_20110725] is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0004923 ! organ component layer relationship: part_of UBERON:0000966 ! retina [Term] id: UBERON:0008922 name: sublaminar layer S1 def: "A retinal neural layer that is immediately adjacent to the inner nuclear layer and comprises 20 percent of the inner plexiform layer of retina." [GOC:tfm] xref: CP:0000113 is_a: UBERON:0008927 ! implied link automatically realized ! sublaminar layers S1 or S2 is_a: UBERON:0009732 ! implied link automatically realized ! sublaminar layers S1 or S2 or S5 is_a: UBERON:0009733 ! implied link automatically realized ! sublaminar layers S1 or S2 or S3 is_a: UBERON:0009735 ! implied link automatically realized ! sublaminar layers S1 or S3 or S4 is_a: UBERON:0009737 ! implied link automatically realized ! sublaminar layers S1 or S2 or S3 or S4 relationship: adjacent_to UBERON:0001791 relationship: adjacent_to UBERON:0008923 intersection_of: UBERON:0008921 ! substratum of layer of retina intersection_of: adjacent_to UBERON:0001791 ! inner nuclear layer of retina intersection_of: adjacent_to UBERON:0008923 ! sublaminar layer S2 relationship: part_of UBERON:0001795 ! inner plexiform layer of retina relationship: part_of UBERON:0008927 ! sublaminar layers S1 or S2 [Term] id: UBERON:0008923 name: sublaminar layer S2 def: "A retinal neural layer that is immediately adjacent to the S1 and S3 layers and comprises 20 percent of the inner plexiform layer of retina." [GOC:tfm] xref: CP:0000114 is_a: UBERON:0008927 ! implied link automatically realized ! sublaminar layers S1 or S2 is_a: UBERON:0008928 ! implied link automatically realized ! sublaminar layers S2 or S3 is_a: UBERON:0009732 ! implied link automatically realized ! sublaminar layers S1 or S2 or S5 is_a: UBERON:0009733 ! implied link automatically realized ! sublaminar layers S1 or S2 or S3 is_a: UBERON:0009734 ! implied link automatically realized ! sublaminar layers S2 or S3 or S4 is_a: UBERON:0009737 ! implied link automatically realized ! sublaminar layers S1 or S2 or S3 or S4 relationship: adjacent_to UBERON:0008922 relationship: adjacent_to UBERON:0008924 intersection_of: UBERON:0008921 ! substratum of layer of retina intersection_of: adjacent_to UBERON:0008922 ! sublaminar layer S1 intersection_of: adjacent_to UBERON:0008924 ! sublaminar layer S3 relationship: part_of UBERON:0001795 ! inner plexiform layer of retina relationship: part_of UBERON:0008927 ! sublaminar layers S1 or S2 relationship: part_of UBERON:0008928 ! sublaminar layers S2 or S3 [Term] id: UBERON:0008924 name: sublaminar layer S3 def: "A retinal neural layer that is immediately adjacent to the S2 and S4 layers and comprises 20 percent of the inner plexiform layer of retina." [GOC:tfm] xref: CP:0000115 is_a: UBERON:0008928 ! implied link automatically realized ! sublaminar layers S2 or S3 is_a: UBERON:0009731 ! implied link automatically realized ! sublaminar layers S3 or S4 is_a: UBERON:0009733 ! implied link automatically realized ! sublaminar layers S1 or S2 or S3 is_a: UBERON:0009734 ! implied link automatically realized ! sublaminar layers S2 or S3 or S4 is_a: UBERON:0009735 ! implied link automatically realized ! sublaminar layers S1 or S3 or S4 is_a: UBERON:0009736 ! implied link automatically realized ! sublaminar layers S3 or S4 or S5 is_a: UBERON:0009737 ! implied link automatically realized ! sublaminar layers S1 or S2 or S3 or S4 relationship: adjacent_to UBERON:0008923 relationship: adjacent_to UBERON:0008925 intersection_of: UBERON:0008921 ! substratum of layer of retina intersection_of: adjacent_to UBERON:0008923 ! sublaminar layer S2 intersection_of: adjacent_to UBERON:0008925 ! sublaminar layer S4 relationship: part_of UBERON:0001795 ! inner plexiform layer of retina relationship: part_of UBERON:0008928 ! sublaminar layers S2 or S3 [Term] id: UBERON:0008925 name: sublaminar layer S4 def: "A retinal neural layer that is immediately adjacent to the S3 and S5 layer and comprises 20 percent of the inner plexiform layer of retina." [GOC:tfm] xref: CP:0000116 is_a: UBERON:0008929 ! implied link automatically realized ! sublaminar layers S4 or S5 is_a: UBERON:0009731 ! implied link automatically realized ! sublaminar layers S3 or S4 is_a: UBERON:0009734 ! implied link automatically realized ! sublaminar layers S2 or S3 or S4 is_a: UBERON:0009735 ! implied link automatically realized ! sublaminar layers S1 or S3 or S4 is_a: UBERON:0009736 ! implied link automatically realized ! sublaminar layers S3 or S4 or S5 is_a: UBERON:0009737 ! implied link automatically realized ! sublaminar layers S1 or S2 or S3 or S4 relationship: adjacent_to UBERON:0008924 relationship: adjacent_to UBERON:0008926 intersection_of: UBERON:0008921 ! substratum of layer of retina intersection_of: adjacent_to UBERON:0008924 ! sublaminar layer S3 intersection_of: adjacent_to UBERON:0008926 ! sublaminar layer S5 relationship: part_of UBERON:0001795 ! inner plexiform layer of retina relationship: part_of UBERON:0008929 ! sublaminar layers S4 or S5 [Term] id: UBERON:0008926 name: sublaminar layer S5 def: "A retinal neural layer that is immediately adjacent to the retinal ganglion cell layer and comprises 20 percent of the ganglion plexiform layer of retina." [GOC:tfm] xref: CP:0000117 is_a: UBERON:0008929 ! implied link automatically realized ! sublaminar layers S4 or S5 is_a: UBERON:0009732 ! implied link automatically realized ! sublaminar layers S1 or S2 or S5 is_a: UBERON:0009736 ! implied link automatically realized ! sublaminar layers S3 or S4 or S5 relationship: adjacent_to UBERON:0001792 relationship: adjacent_to UBERON:0008925 intersection_of: UBERON:0008921 ! substratum of layer of retina intersection_of: adjacent_to UBERON:0001792 ! ganglionic layer of retina intersection_of: adjacent_to UBERON:0008925 ! sublaminar layer S4 relationship: part_of UBERON:0001795 ! inner plexiform layer of retina relationship: part_of UBERON:0008929 ! sublaminar layers S4 or S5 [Term] id: UBERON:0008927 name: sublaminar layers S1 or S2 def: "One of sublaminar layers S1 or S2." [GOC:tfm] xref: CP:0000118 is_a: UBERON:0008921 ! substratum of layer of retina union_of: UBERON:0008922 ! sublaminar layer S1 union_of: UBERON:0008923 ! sublaminar layer S2 relationship: part_of UBERON:0001795 ! inner plexiform layer of retina [Term] id: UBERON:0008928 name: sublaminar layers S2 or S3 def: "One of sublaminar layers S2 or S3." [GOC:tfm] xref: CP:0000119 is_a: UBERON:0008921 ! substratum of layer of retina union_of: UBERON:0008923 ! sublaminar layer S2 union_of: UBERON:0008924 ! sublaminar layer S3 relationship: part_of UBERON:0001795 ! inner plexiform layer of retina [Term] id: UBERON:0008929 name: sublaminar layers S4 or S5 def: "One of sublaminar layers S4 or S5." [GOC:tfm] xref: CP:0000120 is_a: UBERON:0008921 ! substratum of layer of retina union_of: UBERON:0008925 ! sublaminar layer S4 union_of: UBERON:0008926 ! sublaminar layer S5 relationship: part_of UBERON:0001795 ! inner plexiform layer of retina [Term] id: UBERON:0008930 name: somatosensory cortex def: "Area of the parietal lobe concerned with receiving general sensations. It lies posterior to the central sulcus." [MESH:A.08.186.211.730.885.213.670.675] synonym: "somesthetic area" RELATED [BTO:0004353] xref: BTO:0004353 xref: GAID:681 xref: MESH:A.08.186.211.730.885.213.670.675 xref: SCTID:279252006 is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon relationship: part_of UBERON:0002581 {source="BTO"} ! postcentral gyrus [Term] id: UBERON:0008933 name: primary somatosensory cortex comment: ABA disjointness - Removed relationship: part_of UBERON:0001870 {source="MA"} xref: MA:0000908 is_a: UBERON:0008930 ! somatosensory cortex relationship: part_of UBERON:0001872 {source="MA"} ! parietal lobe [Term] id: UBERON:0008934 name: secondary somatosensory cortex xref: MA:0000918 is_a: UBERON:0008930 ! somatosensory cortex relationship: part_of UBERON:0001872 {source="MA"} ! parietal lobe [Term] id: UBERON:0008935 name: albumen gland def: "The posterior oviduct opens into the large white albumen gland which adds a layer of albumen to the zygote before it reaches the egg capsule gland." [BTO:0000054] xref: BTO:0000054 is_a: UBERON:0005398 {source="BTO"} ! female reproductive gland [Term] id: UBERON:0008936 name: gastropod genital pore def: "A small opening on the side of the head in some gastropods through which the penis is protruded." [BTO:0004684] synonym: "genital orifice" RELATED [BTO:0004684] synonym: "genital pore" EXACT [BTO:0004684] xref: BTO:0004684 is_a: UBERON:0000161 ! orifice is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0000990 {source="BTO"} ! reproductive system [Term] id: UBERON:0008937 name: visceral hump def: "Mollusks have three distinct divisions of their body. The head contains the sensory equipment (eyes, antennae, etc) and the primitive brain. The visceral hump, which is the main body, contains most of the organs, including a complete digestive and excretory tract as well as the reproductive organs. The visceral hump also includes the two external flaps of tissue, which are known as the mantle." [BTO:0001448, http://www.britannica.com/EBchecked/topic/630349/visceral-hump] synonym: "visceral sac" RELATED [BTO:0001448] xref: BTO:0001448 is_a: UBERON:0000475 ! organism subdivision [Term] id: UBERON:0008939 name: pedal ganglion def: "The pedal ganglia mainly are necessary for coordination of locomotion of a snail." [BTO:0001012] xref: BTO:0001012 is_a: UBERON:0000045 {source="BTO"} ! ganglion relationship: part_of UBERON:0008937 {source="BTO"} ! visceral hump [Term] id: UBERON:0008940 name: parietal ganglion def: "The lateral ganglia of a snail nervous system are called parietal ganglia. They innerve pallial cavity, gills and skin." [BTO:0001841] xref: BTO:0001841 is_a: UBERON:0000045 {source="BTO"} ! ganglion relationship: part_of UBERON:0008937 {source="BTO"} ! visceral hump [Term] id: UBERON:0008941 name: pleural ganglion def: "The pallial cavity's nerve knots are called pleural ganglia. They innerve primarily the mantle or a snail." [BTO:0001842] xref: BTO:0001842 is_a: UBERON:0000045 {source="BTO"} ! ganglion relationship: part_of UBERON:0008937 {source="BTO"} ! visceral hump [Term] id: UBERON:0008942 name: gastropod cerebral ganglion def: "The cerebral ganglia are primarily sensual centres, that compute information from the eyes as well as from the tactile and position sensors (statocystes). Besides coordination they also serve the locational memory of a snail." [BTO:0001843] synonym: "cerebral ganglion" EXACT [BTO:0001843] xref: BTO:0001843 is_a: UBERON:0000045 {source="BTO"} ! ganglion [Term] id: UBERON:0008943 name: headfoot def: "The head-foot is the part you see most easily in slugs and snails. It is mostly a muscular organ covered in cilia and rich in mucous cells, which the mollusc uses to move around, it normally tapers to a tail at one end and has a head incorporated in the front. The head includes a mouth, eyes and tentacles, the last two may be much reduced or even absent. In those species with shells the head-foot can be drawn into the shell." [BTO:0003509] xref: BTO:0003509 is_a: UBERON:0000475 ! organism subdivision [Term] id: UBERON:0008944 name: albumen def: "Albumen is the clear liquid contained within an egg and consists of water and proteins, among which are ovomucin and ovomucoid. It protects the egg yolk and provides additional nutrition for the growth of the embryo." [GO:0097099, https://sourceforge.net/tracker/index.php?func=detail&aid=3357613&group_id=36855&atid=440764, Wikipedia:Albumen] synonym: "egg white" EXACT [GO:0097099] xref: GO:0097099 xref: ncithesaurus:Egg_White is_a: UBERON:0000463 ! portion of organism substance relationship: part_of UBERON:0007379 ! egg [Term] id: UBERON:0008945 name: extraembryonic endoderm def: "." [http://www.ana.ed.ac.uk/database/humat/notes/extraemb/mesoder.htm] xref: EHDAA:105 xref: EHDAA2:0000473 is_a: UBERON:0000478 {source="EHDAA2"} ! extraembryonic structure is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium is_a: UBERON:0005292 ! implied link automatically realized ! extraembryonic tissue relationship: develops_from UBERON:0008776 {source="EHDAA2"} ! inner cell mass derived hypoblast [Term] id: UBERON:0008946 name: lung parenchyma synonym: "respiratory portion of lung" EXACT [FMA:27360] xref: FMA:27360 xref: SCTID:201712001 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000353 {source="FMA"} ! parenchyma relationship: part_of UBERON:0002048 intersection_of: UBERON:0000353 ! parenchyma intersection_of: part_of UBERON:0002048 ! lung relationship: part_of UBERON:0002048 {source="FMA"} ! lung [Term] id: UBERON:0008947 name: respiratory primordium xref: EHDAA2:0004069 xref: ncithesaurus:Respiratory_Primordium is_a: UBERON:0001048 {source="Obol"} ! primordium relationship: part_of UBERON:0003258 ! endoderm of foregut [Term] id: UBERON:0008948 name: upper lobe of lung synonym: "cranial lobe of lung" EXACT [UBERON:cjm] synonym: "lobus superior" EXACT [FMA:7334] synonym: "lobus superior pulmonis" EXACT [FMA:TA] synonym: "superior lobe of lung" EXACT [FMA:7334] xref: FMA:7334 xref: ncithesaurus:Lung_Upper_Lobe xref: SCTID:303548008 is_a: UBERON:0000101 {source="FMA"} ! lobe of lung [Term] id: UBERON:0008949 name: lower lobe of lung synonym: "inferior lobe of lung" EXACT [UBERON:cjm] synonym: "lobus inferior" EXACT [UBERON:cjm] synonym: "lobus inferior pulmonis" EXACT [UBERON:cjm] xref: FMA:7335 xref: ncithesaurus:Lung_Lower_Lobe xref: SCTID:303549000 is_a: UBERON:0000101 {source="FMA"} ! lobe of lung [Term] id: UBERON:0008950 name: azygous lobe of lung def: "The azygous lobe of the lung is an accessory lobe of the right lung. It is rare and usually associated with an abnormality of the azygous vein. It is produced by an aberrant position of the azygous vein near the hilum of the lung. It divides the right superior lobe near the apex of the lung down to the hilum in roughly the median plane. The fissure created, the meso-azygous fissure, is lined by both visceral and parietal pleura. The lobe lies superomedial to the fissure." [http://www.e-radiography.net/radpath/a/azygoslobe.htm, http://www.gpnotebook.co.uk] is_a: UBERON:0004890 ! right lung accessory lobe [Term] id: UBERON:0008951 name: left lung lobe synonym: "lobe of left lung" EXACT [] synonym: "lobe of the left lung" EXACT [] xref: EHDAA:2981 xref: ncithesaurus:Lobe_of_the_Left_Lung xref: SCTID:272655003 is_a: UBERON:0000101 ! implied link automatically realized ! lobe of lung relationship: part_of UBERON:0002168 intersection_of: UBERON:0000101 ! lobe of lung intersection_of: part_of UBERON:0002168 ! left lung [Term] id: UBERON:0008952 name: upper lobe of left lung def: "The lobe of the left lung that is closest to the head." [UBERON:cjm] synonym: "left lung cranial lobe" EXACT [EHDAA2:0000953] synonym: "left upper lobe" EXACT [FMA:7370] synonym: "left upper lobe of lung" EXACT [FMA:7370] synonym: "lobus superior pulmonis sinistri" EXACT [FMA:TA] synonym: "superior lobe of left lung" EXACT [FMA:7370] xref: EHDAA:4957 xref: EHDAA2:0000953 xref: FMA:7370 xref: ncithesaurus:Upper_Lobe_of_the_Left_Lung xref: SCTID:361984006 is_a: UBERON:0008948 {source="FMA"} ! upper lobe of lung is_a: UBERON:0008951 ! implied link automatically realized ! left lung lobe relationship: part_of UBERON:0002168 intersection_of: UBERON:0008948 ! upper lobe of lung intersection_of: part_of UBERON:0002168 ! left lung [Term] id: UBERON:0008953 name: lower lobe of left lung synonym: "inferior lobe of left lung" EXACT [FMA:7371] synonym: "left lower lobe" EXACT [FMA:7371] synonym: "left lower lobe of lung" EXACT [FMA:7371] synonym: "left lung caudal lobe" EXACT [EHDAA2:0000945] synonym: "lobus inferior (pulmo sinister)" EXACT [FMA:7371] synonym: "lobus inferior pulmonis sinistri" EXACT [FMA:TA] xref: EHDAA:4949 xref: EHDAA2:0000945 xref: FMA:7371 xref: ncithesaurus:Lower_Lobe_of_the_Left_Lung xref: SCTID:361989001 is_a: UBERON:0008949 {source="FMA"} ! lower lobe of lung is_a: UBERON:0008951 ! implied link automatically realized ! left lung lobe relationship: part_of UBERON:0002168 intersection_of: UBERON:0008949 ! lower lobe of lung intersection_of: part_of UBERON:0002168 ! left lung [Term] id: UBERON:0008954 name: lingula of left lung comment: the lingula of the left lung in humans is not normally considered a true lobe synonym: "left pulmonary lingula" EXACT [FMA:7433] synonym: "lingula of lung" EXACT [FMA:7433] synonym: "middle lobe of left lung" EXACT [galen:MiddleLobeOfLeftLung] xref: FMA:7433 xref: galen:MiddleLobeOfLeftLung xref: ncithesaurus:Lingula xref: SCTID:184916009 is_a: UBERON:0008951 ! implied link automatically realized ! left lung lobe is_a: UBERON:0008955 ! implied link automatically realized ! middle lobe/projection of lung relationship: part_of UBERON:0002168 intersection_of: UBERON:0008955 ! middle lobe/projection of lung intersection_of: part_of UBERON:0002168 ! left lung [Term] id: UBERON:0008955 name: middle lobe/projection of lung synonym: "middle lobe of lung" EXACT [galen:MiddleLobeOfLung] xref: galen:MiddleLobeOfLung xref: SCTID:362900002 is_a: UBERON:0000101 ! lobe of lung disjoint_from: UBERON:0008948 ! upper lobe of lung disjoint_from: UBERON:0008949 ! lower lobe of lung [Term] id: UBERON:0008956 name: involucrum def: "a layer of new bone growth outside existing bone seen in pyogenic osteomyelitis. It results from the stripping off of the periosteum by the accumulation of pus within the bone, and new bone growing from the periosteum." [Wikipedia:Involucrum] is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001474 {source="Wikipedia"} ! bone [Term] id: UBERON:0008957 name: sequestrum def: "a piece of dead bone that has become separated during the process of necrosis from normal/sound bone.." [Wikipedia:Sequestrum] is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001474 {source="Wikipedia"} ! bone [Term] id: UBERON:0008958 name: cetacean involucrum is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001474 {source="Wikipedia"} ! bone [Term] id: UBERON:0008959 name: auditory bulla def: "a hollow bony structure on the ventral, posterior portion of the skull of placental mammals that encloses parts of the middle and inner ear. In most species, it is formed by the tympanic part of the temporal bone." [Wikipedia:Auditory_bulla] comment: In extant primates, the structure is found in tarsiers, lemurs, and lorises synonym: "tympanic bulla" RELATED [] is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:0001690 ! ear [Term] id: UBERON:0008960 name: melon organ def: "The melon is an ovoid-shaped, fatty organ found in the forehead of all toothed whales (odontocetes), including dolphins and porpoises (Cranford et al., 1996; Harper, C. J., et al., 2008) and believed to be used in echolocation" [Wikipedia:Melon_(whale)] is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0008961 name: parabronchus def: "tertiary bronchi in the avian lung. The domestic fowl has some 500 parabronchi each 1 to 2 mm diameter with the wall of each containing the complex respiratory epithelium." [http://medical-dictionary.thefreedictionary.com/parabronchi] subset: organ_slim synonym: "parabronchia" RELATED PLURAL [] is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002185 ! bronchus relationship: part_of UBERON:0002048 ! lung [Term] id: UBERON:0008962 name: forelimb bone synonym: "wing bone" NARROW SENSU [Geisha:syn] xref: MA:0000612 xref: SCTID:371195002 is_a: UBERON:0002428 ! implied link automatically realized ! limb bone relationship: part_of UBERON:0002102 intersection_of: UBERON:0002428 ! limb bone intersection_of: part_of UBERON:0002102 ! forelimb relationship: part_of UBERON:0001440 ! forelimb skeleton [Term] id: UBERON:0008963 name: hoof def: "The tip of a toe of an ungulate mammal, strengthened by a thick horny (keratin) covering. The hoof consists of a hard or rubbery sole, and a hard wall formed by a thick nail rolled around the tip of the toe. The weight of the animal is normally borne by both the sole and the edge of the hoof wall. Hooves grow continuously, and are constantly worn down by use." [Wikipedia:Hoof] comment: The hoof is the integument of the foot. Like skin, the integument of the foot has three layers, namely the epidermis, dermis, and SC tissue. xref: BTO:0003994 xref: SCTID:410026002 is_a: UBERON:0009564 ! distal limb integumentary appendage [Term] id: UBERON:0008964 name: abdominal ganglion of visceral hump def: "The visceral sacs nerve knot is called visceral ganglion. In contrary to the mostly paired other ganglia this nerve knot is unpaired. The visceral ganglion innerves the pallial organs as well as the inner organs." [BTO:0000022] synonym: "abdominal ganglion" RELATED [BTO:0000022] synonym: "visceral ganglion" RELATED [BTO:0000022] xref: BTO:0000022 is_a: UBERON:0000045 {source="BTO"} ! ganglion relationship: part_of UBERON:0008937 {source="BTO"} ! visceral hump [Term] id: UBERON:0008967 name: centrum semiovale def: "The semioval center is the white matter found underneath the grey matter on the surface of the cerebrum. The term is synonymous with cerebral white matter. The white matter, located in each hemisphere between the cerebral cortex and nuclei, as a whole has a semioval shape. It consists of cortical projection fibers, association fibers and cortical fibers." [Wikipedia:Semioval_center] comment: note that WP suggests a merge with cerebral white matter synonym: "medullary center" EXACT [FMA:61939] synonym: "semioval center" RELATED [BTO:0000229] synonym: "white matter of cerebrum" EXACT [FMA:61939] xref: BTO:0000229 xref: FMA:61939 xref: SCTID:369198002 is_a: UBERON:0000073 {source="BTO"} ! regional part of nervous system relationship: part_of UBERON:0002437 {source="BTO"} ! cerebral white matter [Term] id: UBERON:0008969 name: dental follicle def: "The structure within the developing alveolar bone of the jaws enclosing the tooth germ." [BTO:0000337] synonym: "tooth follicle" RELATED [BTO:0000337] xref: BTO:0000337 xref: SCTID:110975002 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0005087 {source="BTO"} ! tooth placode relationship: part_of UBERON:0000165 {source="BTO"} ! mouth [Term] id: UBERON:0008971 name: left colon def: "The distal portion of the colon; it develops embryonically from the hindgut and functions in the storage and elimination of waste." [BTO:0000646] synonym: "distal colon" RELATED [BTO:0000646] xref: BTO:0000646 xref: ncithesaurus:Left_Colon xref: SCTID:362164005 is_a: UBERON:0000064 ! organ part is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure relationship: develops_from UBERON:0001046 {source="BTO"} ! hindgut relationship: part_of UBERON:0001155 {source="BTO"} ! colon [Term] id: UBERON:0008972 name: right colon def: "The proximal portion of the colon, extending from the ileocecal valve usually to a point proximal to the left colic flexure; it develops embryonically from the terminal portion of the midgut and functions in absorption." [BTO:0000649] synonym: "proximal colon" RELATED [BTO:0000649] xref: BTO:0000649 xref: ncithesaurus:Right_Colon xref: SCTID:362161002 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: develops_from UBERON:0001045 {source="BTO"} ! midgut relationship: part_of UBERON:0001155 {source="BTO"} ! colon [Term] id: UBERON:0008974 name: apocrine gland def: "A gland whose discharged secretion contains part of the secreting cells." [BTO:0001162] subset: organ_slim xref: BTO:0001162 xref: SCTID:361698000 is_a: UBERON:0002530 {source="BTO"} ! gland [Term] id: UBERON:0008975 name: shell gland subset: grouping_class xref: BTO:0001241 xref: SCTID:14478002 is_a: UBERON:0005398 {source="BTO"} ! female reproductive gland [Term] id: UBERON:0008976 name: venom gland def: "The venom gland of snakes is in actual fact a modified salivary gland and is linked to the groove in the fangs by a duct." [BTO:0001440] subset: organ_slim synonym: "poison gland" RELATED [BTO:0001440] xref: BTO:0001440 xref: SCTID:362181001 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0002365 {source="BTO"} ! exocrine gland relationship: develops_from UBERON:0001044 {source="BTO"} ! salivary gland [Term] id: UBERON:0008977 name: pes anserinus def: "The pes anserinus is the insertion of the conjoined tendons of three muscles onto the anteromedial (front and inside) surface of the proximal extremity of the tibia." [Wikipedia:Pes_anserinus_%28leg%29] synonym: "pes anserine" RELATED [Wikipedia:Pes_anserinus_%28leg%29] xref: BTO:0001507 xref: SCTID:360767004 is_a: UBERON:0001630 {source="BTO"} ! muscle organ relationship: part_of UBERON:0000043 {source="BTO"} ! tendon [Term] id: UBERON:0008978 name: anal sac def: "In carnivores, either of two sacs found between the internal and external anal sphincters, lined with sebaceous glands and in some species with apocrine glands." [BTO:0001681] xref: BTO:0001681 xref: SCTID:362169000 is_a: UBERON:0000064 {source="BTO"} ! organ part is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: part_of UBERON:0001245 {source="BTO"} ! anus [Term] id: UBERON:0008979 name: carcass def: "A dead body." [BTO:0001965] synonym: "cadaver" RELATED [BTO:0001965] synonym: "dead body" RELATED [BTO:0001965] xref: BTO:0001965 xref: SCTID:127853004 is_a: UBERON:0000061 {source="BTO"} ! anatomical structure [Term] id: UBERON:0008981 name: rhinencephalon def: "The olfactory region of the brain, located in the cerebrum." [BTO:0002785] synonym: "olfactory brain" RELATED [BTO:0002785] xref: BTO:0002785 xref: SCTID:361576004 is_a: UBERON:0000073 {source="BTO"} ! regional part of nervous system relationship: part_of UBERON:0001893 {source="BTO"} ! telencephalon [Term] id: UBERON:0008982 name: fascia def: "A sheet of connective tissue covering or binding together body structures as muscles." [BTO:0002930] xref: BTO:0002930 xref: FMA:30318 xref: ncithesaurus:Fascia xref: SCTID:181772008 is_a: UBERON:0002384 {source="BTO"} ! connective tissue [Term] id: UBERON:0008987 name: renal parenchyma def: "The functional tissue of the kidney, consisting of the nephrons." [BTO:0003604] synonym: "kidney parenchyma" RELATED [BTO:0003604] xref: BTO:0003604 xref: FMA:15574 xref: SCTID:29704000 is_a: UBERON:0000353 {source="FMA"} ! parenchyma is_a: UBERON:0006554 {source="BTO"} ! urinary system structure relationship: part_of UBERON:0002113 intersection_of: UBERON:0000353 ! parenchyma intersection_of: part_of UBERON:0002113 ! kidney relationship: part_of UBERON:0002113 {source="FMA"} ! kidney [Term] id: UBERON:0008989 name: esophageal gland def: "One of the racemose glands in the walls of the esophagus that in humans are small and serve principally to lubricate the food but in some birds secrete a milky fluid on which the young are fed." [BTO:0003634] xref: BTO:0003634 xref: FMA:9404 xref: ncithesaurus:Esophageal_Gland xref: SCTID:322749003 is_a: UBERON:0000064 {source="BTO"} ! organ part is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0001043 {source="BTO"} ! esophagus [Term] id: UBERON:0008992 name: chorion frondosum def: "The part of the chorion where the villi persist, forming the foetal part of the placenta." [BTO:0003677] synonym: "shaggy chorion" RELATED [BTO:0003677] xref: BTO:0003677 xref: SCTID:37333001 is_a: UBERON:0000478 {source="BTO"} ! extraembryonic structure relationship: part_of UBERON:0003124 {source="BTO"} ! chorion [Term] id: UBERON:0008993 name: habenular nucleus def: "The gray matter of the habenula, composed of a small-celled medial and a larger-celled lateral habenular nucleus; both nuclei receive fibres from basal forebrain regions (septum, basal nucleus, lateral preoptic nucleus); the lateral habenular nucleus receives an additional projection from the medial segment of the globus pallidus. Both nuclei project by way of the retroflex fasciculus to the interpeduncular nucleus and a medial zone of the midbrain tegmentum." [BTO:0003685] synonym: "ganglion habenulae" RELATED [BTO:0003685] synonym: "nucleus habenulae" RELATED [BTO:0003685] xref: BTO:0003685 xref: SCTID:279303009 is_a: UBERON:0000445 {source="BTO"} ! habenular trigone relationship: part_of UBERON:0001904 {source="BTO"} ! habenula [Term] id: UBERON:0008994 name: glandular stomach def: "Stomach found in horses; includes cardiac, proper gastric and pyloric glandular zones." [BTO:0003791] subset: organ_slim synonym: "stomachus glandularis" RELATED [BTO:0003791] xref: BTO:0003791 xref: ncithesaurus:Glandular_Stomach xref: SCTID:27633001 is_a: UBERON:0000945 {source="BTO"} ! stomach [Term] id: UBERON:0008995 name: cerebellar nucleus def: "Four accumulations of gray substance embedded in the white substance of the cerebellum, comprising the nucleus dentatus, nucleus emboliformis, nucleus globosus, and nucleus fastigii." [BTO:0003835] xref: BTO:0003835 xref: SCTID:279220006 is_a: UBERON:0000073 {source="BTO"} ! regional part of nervous system relationship: part_of UBERON:0002037 {source="BTO"} ! cerebellum [Term] id: UBERON:0008996 name: nucleus dentatus xref: BTO:0003836 xref: SCTID:279221005 is_a: UBERON:0000073 {source="BTO"} ! regional part of nervous system [Term] id: UBERON:0008997 name: nucleus fastigii xref: BTO:0003839 xref: SCTID:279224002 is_a: UBERON:0000073 {source="BTO"} ! regional part of nervous system [Term] id: UBERON:0008998 name: cerebrovascular system def: "System pertaining to blood vessels in the brain." [BTO:0003840] xref: BTO:0003840 xref: SCTID:362029003 is_a: UBERON:0000467 ! anatomical system relationship: part_of UBERON:0007798 {source="BTO"} ! vascular system [Term] id: UBERON:0008999 name: hoof lamina def: "The tissues which attach the third phalanx to the hoof wall." [BTO:0003997] synonym: "hoof laminae" RELATED [BTO:0003997] xref: BTO:0003997 xref: SCTID:370743008 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0008963 {source="BTO"} ! hoof [Term] id: UBERON:0009000 name: ischial spine def: "A bony process projecting backward and medialward from the posterior border of the ischium." [BTO:0004149] xref: BTO:0004149 xref: FMA:17028 xref: SCTID:18074002 is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:0001130 {source="BTO"} ! vertebral column [Term] id: UBERON:0009002 name: placental membrane def: "The membrane separating the fetal from the maternal blood in the placenta; sometimes inappropriately called the placental barrier." [BTO:0004196] synonym: "placental barrier" RELATED [BTO:0004196] xref: BTO:0004196 xref: ncithesaurus:Placental_Membrane xref: SCTID:256591004 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000478 {source="BTO"} ! extraembryonic structure is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0001987 {source="BTO"} ! placenta [Term] id: UBERON:0009005 name: femorotibial joint def: "One of the two primary bendings of a typical leg, pertains to the femur and the tibia." [BTO:0004396] xref: BTO:0004396 xref: SCTID:182203004 is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004905 {source="BTO"} ! joint relationship: part_of UBERON:0000978 {source="BTO"} ! leg [Term] id: UBERON:0009006 name: deep inguinal lymph node def: "One of several small inconstant lymph nodes, proximal, intermediate and distal deep to the fascia lata and medial to the femoral vein; they receive lymph from the deep structures of the lower limb, from the glans penis and from superficial inguinal nodes; efferents pass to the external iliac nodes." [BTO:0004548] synonym: "nodi lymphatici inguinales profundi" RELATED [BTO:0004548] xref: BTO:0004548 xref: FMA:44225 xref: SCTID:65266007 is_a: UBERON:0000029 {source="BTO"} ! lymph node [Term] id: UBERON:0009007 name: superficial inguinal lymph node def: "A group of 12-20 lymph nodes that lie in the subcutaneous tissue below the inguinal ligament and along the terminal part of the great saphenous vein; they drain the skin and subcutaneous tissue of the lower abdominal wall, perineum, buttocks, external genitalia, and lower limbs." [BTO:0004549] xref: BTO:0004549 xref: FMA:5036 xref: SCTID:113340006 is_a: UBERON:0000029 {source="BTO"} ! lymph node [Term] id: UBERON:0009009 name: carotid sinus nerve def: "Carotid branch of glossopharyngeal nerve." [BTO:0004978] xref: BTO:0004978 xref: FMA:53488 xref: SCTID:50624003 is_a: UBERON:0001021 {source="FMA"} ! nerve relationship: part_of UBERON:0001649 {source="BTO"} ! glossopharyngeal nerve [Term] id: UBERON:0009010 name: periurethral tissue def: "Tissue around the urethra." [BTO:0005081] xref: BTO:0005081 xref: SCTID:256880003 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000479 ! tissue is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0000057 ! urethra [Term] id: UBERON:0009013 name: white fibrocartilage xref: MA:0000486 xref: SCTID:3008003 is_a: UBERON:0001995 {source="UBERON"} ! fibrocartilage [Term] id: UBERON:0009014 name: lower back skin subset: organ_slim xref: MA:0000504 xref: SCTID:286601005 is_a: UBERON:0001068 ! implied link automatically realized ! skin of back is_a: UBERON:0003836 {source="MA"} ! abdominal segment skin relationship: part_of UBERON:0005462 intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0005462 ! lower back [Term] id: UBERON:0009015 name: upper back skin xref: MA:0000510 xref: SCTID:304890003 is_a: UBERON:0001068 ! implied link automatically realized ! skin of back is_a: UBERON:0001418 {source="MA"} ! skin of thorax relationship: part_of UBERON:0008231 intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0008231 ! upper back [Term] id: UBERON:0009016 name: ciliary stroma xref: MA:0001239 xref: SCTID:280868008 is_a: UBERON:0003566 ! implied link automatically realized ! head connective tissue is_a: UBERON:0003891 ! stroma relationship: part_of UBERON:0001775 {source="MA"} ! ciliary body [Term] id: UBERON:0009020 name: left uterine horn xref: MA:0001727 xref: SCTID:245482004 is_a: UBERON:0002247 ! implied link automatically realized ! uterine horn relationship: in_left_side_of UBERON:0000995 intersection_of: UBERON:0002247 ! uterine horn intersection_of: in_left_side_of UBERON:0000995 ! uterus [Term] id: UBERON:0009022 name: right uterine horn xref: MA:0001728 xref: SCTID:245481006 is_a: UBERON:0002247 ! implied link automatically realized ! uterine horn relationship: in_right_side_of UBERON:0000995 intersection_of: UBERON:0002247 ! uterine horn intersection_of: in_right_side_of UBERON:0000995 ! uterus [Term] id: UBERON:0009024 name: adrenal gland X zone def: "A wide juxta-medullary layer of cells in the adrenal glands of young mature virgin female mice." [http://www.jstor.org/pss/82802] synonym: "juvenile zone" RELATED [MA:0001888] xref: MA:0001888 xref: SCTID:24306004 is_a: UBERON:0009753 {source="MA"} ! adrenal gland cortex zone relationship: part_of UBERON:0001235 {source="MA"} ! adrenal cortex relationship: part_of UBERON:0003100 ! female organism [Term] id: UBERON:0009025 name: gastroepiploic artery def: "Abdominal artery that follows the curvature of the stomach. The right gasteroepiploic artery is frequently used in coronary artery bypass grafting, myocardial revascularization, and other vascular reconstruction." [MESH:A.07.231.114.379] subset: grouping_class xref: MA:0001962 xref: MESH:A.07.231.114.379 xref: ncithesaurus:Gastroepiploic_Artery xref: SCTID:261401008 is_a: UBERON:0001637 {source="MA"} ! artery [Term] id: UBERON:0009026 name: iliac circumflex artery xref: MA:0001975 xref: ncithesaurus:Circumflex_Iliac_Artery xref: SCTID:244327004 is_a: UBERON:0001637 {source="MA"} ! artery [Term] id: UBERON:0009027 name: vesical artery xref: MA:0002078 xref: SCTID:244307000 is_a: UBERON:0001637 {source="MA"} ! artery [Term] id: UBERON:0009029 name: pudendal vein xref: MA:0002202 xref: SCTID:395225000 is_a: UBERON:0001638 {source="MA"} ! vein [Term] id: UBERON:0009030 name: left pulmonary vein xref: MA:0002207 xref: ncithesaurus:Left_Pulmonary_Vein xref: SCTID:304057004 is_a: UBERON:0002016 {source="MA"} ! pulmonary vein [Term] id: UBERON:0009032 name: right pulmonary vein xref: MA:0002208 xref: ncithesaurus:Right_Pulmonary_Vein xref: SCTID:304056008 is_a: UBERON:0002016 {source="MA"} ! pulmonary vein [Term] id: UBERON:0009034 name: stomach region xref: MA:0002561 xref: SCTID:245415005 is_a: UBERON:0000064 ! implied link automatically realized ! organ part is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0000945 intersection_of: UBERON:0000064 ! organ part intersection_of: part_of UBERON:0000945 ! stomach [Term] id: UBERON:0009035 name: renal straight tubule comment: todo - add relationships xref: MA:0002634 xref: SCTID:245151008 is_a: UBERON:0001231 {source="MA"} ! nephron tubule [Term] id: UBERON:0009038 name: sulcus ampullaris def: "the groove on the external surface of the ampulla of each semicircular duct where the nerve enters the ampullary crest." [http://www.medilexicon.com/medicaldictionary.php?s=ampullary+groove] synonym: "ampullary groove" EXACT [FMA:74584] synonym: "ampullary sulcus" EXACT [] xref: FMA:74584 xref: MA:0002835 xref: SCTID:368954006 is_a: UBERON:0006800 {source="FMA"} ! anatomical line relationship: part_of UBERON:0004043 {source="MA"} ! semicircular canal ampulla [Term] id: UBERON:0009039 name: lymph node germinal center xref: MA:0002989 xref: ncithesaurus:Lymph_Node_Germinal_Center xref: SCTID:16733004 is_a: UBERON:0001744 {source="MA"} ! lymphoid tissue relationship: part_of UBERON:0001745 {source="MA"} ! secondary nodular lymphoid tissue [Term] id: UBERON:0009040 name: deep circumflex iliac artery def: "The deep circumflex iliac artery (or deep iliac circumflex artery) is an artery in the pelvis that travels along the iliac crest of the pelvic bone." [Wikipedia:Deep_circumflex_iliac_artery] synonym: "arteria circumflexa ilium profunda" EXACT [Wikipedia:Deep_circumflex_iliac_artery] synonym: "deep iliac circumflex" RELATED [Wikipedia:Deep_circumflex_iliac_artery] synonym: "deep iliac circumflex artery" RELATED [Wikipedia:Deep_circumflex_iliac_artery] xref: FMA:20687 xref: http://upload.wikimedia.org/wikipedia/commons/0/07/Gray586.png xref: ncithesaurus:Deep_Circumflex_Iliac_Artery is_a: UBERON:0009026 ! iliac circumflex artery relationship: branch_of UBERON:0001308 {source="FMA"} ! external iliac artery relationship: part_of UBERON:0001308 {source="FMA"} ! external iliac artery [Term] id: UBERON:0009041 name: superficial circumflex iliac artery def: "The superficial iliac circumflex artery (or superficial circumflex iliac), the smallest of the cutaneous branches of the femoral artery, arises close to the superficial epigastric artery, and, piercing the fascia lata, runs lateralward, parallel with the inguinal ligament, as far as the crest of the ilium. It divides into branches which supply the integument of the groin, the superficial fascia, and the superficial subinguinal lymph glands, anastomosing with the deep iliac circumflex, the superior gluteal and lateral femoral circumflex arteries." [Wikipedia:Superficial_iliac_circumflex_artery] synonym: "arteria circumflexa ilium superficialis" EXACT [Wikipedia:Superficial_iliac_circumflex_artery] synonym: "iliac circumflex artery" RELATED [Wikipedia:Superficial_iliac_circumflex_artery] synonym: "superficial circumflex iliac artery" RELATED [Wikipedia:Superficial_iliac_circumflex_artery] xref: FMA:20737 xref: http://upload.wikimedia.org/wikipedia/commons/8/8b/Gray548.png xref: ncithesaurus:Superficial_Circumflex_Iliac_Artery is_a: UBERON:0009026 ! iliac circumflex artery relationship: branch_of UBERON:0002060 {source="FMA"} ! femoral artery relationship: part_of UBERON:0001308 {source="FMA"} ! external iliac artery relationship: part_of UBERON:0002060 {source="FMA"} ! femoral artery [Term] id: UBERON:0009042 name: prostatic venous plexus def: "The prostatic veins form a well-marked prostatic plexus which lies partly in the fascial sheath of the prostate and partly between the sheath and the prostatic capsule. It communicates with the pudendal and vesical plexuses." [Wikipedia:Prostatic_venous_plexus] synonym: "pudendal venous plexus" RELATED [FMA:29711] xref: FMA:29711 is_a: UBERON:0001593 {source="FMA"} ! venous plexus [Term] id: UBERON:0009044 name: pudendal venous plexus def: "The pudendal plexus (vesicoprostatic plexus) lies behind the arcuate pubic ligament and the lower part of the pubic symphysis, and in front of the bladder and prostate. Its chief tributary is the deep dorsal vein of the penis, but it also receives branches from the front of the bladder and prostate. It communicates with the vesical plexus and with the internal pudendal vein and drains into the vesical and hypogastric veins." [Wikipedia:Pudendal_plexus_(veins)] xref: SCTID:65326006 is_a: UBERON:0001593 ! venous plexus [Term] id: UBERON:0009046 name: inferior external pudendal vein xref: MA:0002203 is_a: UBERON:0009029 {source="MA"} ! pudendal vein [Term] id: UBERON:0009047 name: superior external pudendal vein xref: MA:0002204 is_a: UBERON:0009029 {source="MA"} ! pudendal vein [Term] id: UBERON:0009048 name: deep external pudendal vein xref: FMA:44488 is_a: UBERON:0009029 ! pudendal vein [Term] id: UBERON:0009049 name: superficial external pudendal vein xref: FMA:21377 is_a: UBERON:0009029 ! pudendal vein [Term] id: UBERON:0009050 name: nucleus of solitary tract def: "." [Wikipedia:Solitary_nucleus] synonym: "nucleus of the tractus solitarius" EXACT [NIF_GrossAnatomy:birnlex_1429] synonym: "nucleus of tractus solitarius" EXACT [Wikipedia:Solitary_nucleus] synonym: "solitary nucleus" EXACT [] synonym: "solitary tract nucleus" EXACT [] xref: BM:Me-NS xref: BTO:0003963 xref: EV:0100288 xref: FMA:256691 xref: GAID:593 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray696.png/200px-Gray696.png xref: MA:0001052 xref: MESH:A.08.186.211.132.810.406.750 xref: ncithesaurus:Nucleus_of_the_Solitary_Tract xref: ncithesaurus:Solitary_Nucleus xref: NIF_GrossAnatomy:birnlex_1429 is_a: UBERON:0007635 ! implied link automatically realized ! nucleus of medulla oblongata relationship: part_of UBERON:0002126 intersection_of: UBERON:0002308 ! nucleus of brain intersection_of: part_of UBERON:0002126 ! solitary tract nuclear complex [Term] id: UBERON:0009051 name: gelatinous nucleus of solitary tract xref: ABA:NTSge xref: FMA:77463 is_a: UBERON:0009050 {source="FMA"} ! nucleus of solitary tract [Term] id: UBERON:0009052 name: medial nucleus of solitary tract xref: ABA:NTSm xref: FMA:229585 is_a: UBERON:0009050 {source="FMA"} ! nucleus of solitary tract [Term] id: UBERON:0009053 name: dorsal nucleus of trapezoid body synonym: "dorsal nucleus of trapezoid body" EXACT [NIF_GrossAnatomy:birnlex_2575] xref: NIF_GrossAnatomy:birnlex_2575 xref: SCTID:369021001 is_a: UBERON:0007633 ! nucleus of trapezoid body [Term] id: UBERON:0009054 name: open circulatory system comment: The Open Circulatory System is a system in which fluid (called hemolymph) in a cavity called the hemocoel bathes the organs directly with oxygen and nutrients and there is no distinction between blood and interstitial fluid; this combined fluid is called hemolymph or haemolymph is_a: UBERON:0001009 {source="GO"} ! circulatory system [Term] id: UBERON:0009055 name: closed circulatory system comment: The circulatory systems of all vertebrates, as well as of annelids (for example, earthworms) and cephalopods (squid and octopus) are closed, just as in humans. Still, the systems of fish, amphibians, reptiles, and birds show various stages of the evolution of the circulatory system is_a: UBERON:0001009 {source="GO"} ! circulatory system [Term] id: UBERON:0009056 name: two-pass circulatory system def: "A closed circulatory system in which blood passes twice through the heart to supply the body once." [GO:0035905, Wikipedia:Double_circulatory_system] is_a: UBERON:0009055 ! closed circulatory system [Term] id: UBERON:0009057 name: one-pass circulatory system def: "A closed circulatory system in which blood passes once through the heart to supply the body once." [GO:0035907] is_a: UBERON:0009055 ! closed circulatory system [Term] id: UBERON:0009058 name: faveolus def: "A bellows-shaped respiratory unit extending from the outer wall of the lung into a central air space." [PMID:12869615] comment: Dunker (1978) coined the terms ediculae or faveoli to describe the unit structure of the reptilian parenchymal, which are analogous to mammalian alveoli, but are up to 1,000 times larger than alveoli of similar sized mammals[PMID:12625309] synonym: "edicula" RELATED SENSU [PMID:12625309] synonym: "faveoli" RELATED PLURAL [] is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0002048 ! lung [Term] id: UBERON:0009060 name: air sac def: "any of the membranous air-filled extensions of the lungs of birds, which increase the efficiency of gaseous exchange in the lungs" [http://www.thefreedictionary.com/air+sac, Wikipedia:Bird_anatomy#Respiratory_system] comment: Three distinct sets of organs perform respiration—the anterior air sacs (interclavicular, cervicals, and anterior thoracics), the lungs, and the posterior air sacs (posterior thoracics and abdominals). The posterior and anterior air sacs, typically nine, expand during inhalation. Air enters the bird via the trachea. Half of the inhaled air enters the posterior air sacs, the other half passes through the lungs and into the anterior air sacs. Air from the anterior air sacs empties directly into the trachea and out the bird's mouth or nares. The posterior air sacs empty their air into the lungs. Air passing through the lungs as the bird exhales is expelled via the trachea. Some taxonomic groups (Passeriformes) possess 7 air sacs, as the clavicular air sacs may interconnect or be fused with the cranial thoracic air sacs[WP] synonym: "psotcranial air sac" RELATED [UBERON:cjm] xref: http://upload.wikimedia.org/wikipedia/commons/f/f2/BirdRespiration.svg xref: MESH:A.13.048 xref: SCTID:49081009 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0009061 name: anterior air sac is_a: UBERON:0009060 ! air sac [Term] id: UBERON:0009062 name: posterior air sac comment: Half of the inhaled air enters the posterior air sacs. The posterior air sacs empty their air into the lungs. is_a: UBERON:0009060 ! air sac [Term] id: UBERON:0009063 name: interclavicular air sac is_a: UBERON:0009061 ! anterior air sac [Term] id: UBERON:0009064 name: cervical air sac xref: SCTID:62426003 is_a: UBERON:0009061 ! anterior air sac [Term] id: UBERON:0009065 name: anterior thoracic air sac is_a: UBERON:0009061 ! anterior air sac [Term] id: UBERON:0009066 name: posterior thoracic air sac xref: SCTID:10576005 is_a: UBERON:0009062 ! posterior air sac [Term] id: UBERON:0009067 name: abdominal air sac xref: SCTID:43701009 is_a: UBERON:0009062 ! posterior air sac [Term] id: UBERON:0009071 name: mesobronchus subset: organ_slim synonym: "mesobronchi" RELATED PLURAL [] is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002185 ! bronchus relationship: part_of UBERON:0002048 ! lung [Term] id: UBERON:0009072 name: ventrobronchus subset: organ_slim is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002185 ! bronchus relationship: part_of UBERON:0002048 ! lung [Term] id: UBERON:0009073 name: dorsobronchus subset: organ_slim is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002185 ! bronchus relationship: part_of UBERON:0002048 ! lung [Term] id: UBERON:0009074 name: syrinx organ def: "vocal organ of birds, located at the base of a trachea" [Wikipedia:Syrinx_(bird_anatomy)] subset: organ_slim synonym: "avian vocal organ" RELATED [] synonym: "syrinx" RELATED [] xref: http://upload.wikimedia.org/wikipedia/commons/8/87/Syrinx.jpg is_a: UBERON:0000062 ! organ [Term] id: UBERON:0009075 name: membrana tympaniformis synonym: "wall of syrinx" EXACT [Wikipedia:Syrinx_(bird_anatomy)] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0009074 ! syrinx organ [Term] id: UBERON:0009076 name: membrana tympaniformis lateralis is_a: UBERON:0009075 ! membrana tympaniformis [Term] id: UBERON:0009077 name: membrana tympaniformis medialis is_a: UBERON:0009075 ! membrana tympaniformis [Term] id: UBERON:0009078 name: pessulus def: "A delicate bar of cartilage connecting the dorsal and ventral extremities of the first pair of bronchial cartilages in the syrinx of birds" [http://www.encyclo.co.uk/webster/P/64] is_a: UBERON:0007844 ! cartilaginous element relationship: part_of UBERON:0009074 ! syrinx organ [Term] id: UBERON:0009089 name: inner medulla vasa recta descending limb xref: KUPO:0001003 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0004776 {source="KUPO"} ! inner renal medulla vasa recta [Term] id: UBERON:0009090 name: outer medulla vasa recta descending limb xref: KUPO:0001004 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0004775 {source="KUPO"} ! outer renal medulla vasa recta [Term] id: UBERON:0009091 name: vasa recta ascending limb xref: KUPO:0001005 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0004726 {source="KUPO"} ! vasa recta [Term] id: UBERON:0009092 name: inner medulla vasa recta ascending limb xref: KUPO:0001006 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0004776 {source="KUPO"} ! inner renal medulla vasa recta [Term] id: UBERON:0009093 name: outer medulla vasa recta ascending limb xref: KUPO:0001007 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0004775 {source="KUPO"} ! outer renal medulla vasa recta [Term] id: UBERON:0009095 name: tip of renal papilla synonym: "papillary tip" EXACT [KUPO:0001009] synonym: "papillary tips" EXACT PLURAL [KUPO:0001009] xref: KUPO:0001009 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0001228 {source="KUPO"} ! renal papilla [Term] id: UBERON:0009096 name: gravid stage def: "The adult stage at which the organism contains a developing embryo, fetus, or unborn offspring within the body." [BTO:0004733] synonym: "gravid" RELATED [BTO:0004733] synonym: "pregnant adult stage" RELATED [BTO:0004733] synonym: "pregnant stage" RELATED [BTO:0004733] xref: BTO:0004733 is_a: UBERON:0000113 {source="BTO"} ! post-juvenile adult stage [Term] id: UBERON:0009097 name: gravid organism def: "An organism containing a developing embryo, fetus, or unborn offspring within the body." [BTO:0004733] synonym: "pregnant organism" RELATED [] is_a: UBERON:0007023 ! implied link automatically realized ! adult organism relationship: has_part UBERON:0000922 intersection_of: UBERON:0007023 ! adult organism intersection_of: has_part UBERON:0000922 ! embryo relationship: existence_ends_with UBERON:0009096 ! gravid stage relationship: existence_starts_with UBERON:0009096 ! gravid stage [Term] id: UBERON:0009098 name: gravid uterus def: "The uterus in pregnancy" [http://medical-dictionary.thefreedictionary.com/gravid+uterus] xref: ncithesaurus:Gravid_Uterus is_a: UBERON:0000995 ! implied link automatically realized ! uterus relationship: contains UBERON:0000922 intersection_of: UBERON:0000995 ! uterus intersection_of: contains UBERON:0000922 ! embryo relationship: part_of UBERON:0009097 ! gravid organism [Term] id: UBERON:0009099 name: typhlosole def: "an invagination of the intestinal epithelium that emanates from a lamina of mesenchymal cells located between the dorsal aorta and the upper intestine and constitute one of the two principal hematopoietic organs at the ammocoete stage of development." [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2093943/, Wikipedia:Typhlosole] is_a: UBERON:0005423 ! developing anatomical structure relationship: develops_from UBERON:0003104 ! mesenchyme relationship: part_of UBERON:0001277 ! intestinal epithelium relationship: part_of UBERON:0002390 ! hematopoietic system relationship: part_of UBERON:0009101 ! ammocoete [Term] id: UBERON:0009100 name: nephric fold comment: Lymphocytes are also abundant in the lamprey kidney, where large populations are intermingled around the renal tubules is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0002390 ! hematopoietic system relationship: part_of UBERON:0009101 ! ammocoete [Term] id: UBERON:0009101 name: ammocoete def: "lamprey at larval stage" [] is_a: UBERON:0002548 ! larva [Term] id: UBERON:0009102 name: supraneural body def: "One of the primary immunological organs of the adult lamprey is the supraneural body. This structure lies dorsal to spinal column and becomes heavily populated with lymphocytes following after immune challenge [13–15]. The supraneural body from hematopoietically stimulated lampreys appears to be histologically-similar to ‘bone marrow’ in higher vertebrates and contains all blood cell lineages and their precursors, including lymphocytes at all stages of maturity[16]." [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2823822/#R16] subset: organ_slim synonym: "dorsal fat body" EXACT [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2093943/] synonym: "pro-vertebral arch" EXACT [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2093943/] is_a: UBERON:0000062 ! organ is_a: UBERON:0004177 ! implied link automatically realized ! hemopoietic organ is_a: UBERON:0005057 ! implied link automatically realized ! immune organ relationship: part_of UBERON:0002390 ! hematopoietic system relationship: part_of UBERON:0002405 ! immune system [Term] id: UBERON:0009113 name: thymic region is_a: UBERON:0000475 ! organism subdivision relationship: overlaps UBERON:0000974 {source="EHDAA2-modified"} ! neck relationship: overlaps UBERON:0002224 {source="MA-modified"} ! thoracic cavity relationship: overlaps UBERON:0003728 ! mediastinum relationship: part_of UBERON:0000153 ! anterior region of body [Term] id: UBERON:0009114 name: cervical thymus def: "A mature thymus that is entirely part of the cervical region." [UBERON:cjm] comment: A cervical thymus is a pathological structure in a human - it can form during the migration of the thymus to its location in the mediastinum. Some mice have a cervical thymus. There are examples of cervical thymi in marsupials and prosimians[ISBN-10:0781714125] subset: organ_slim is_a: UBERON:0002370 ! implied link automatically realized ! thymus relationship: part_of UBERON:0000974 intersection_of: UBERON:0002370 ! thymus intersection_of: part_of UBERON:0000974 ! neck [Term] id: UBERON:0009115 name: thoracic thymus def: "A mature thymus that is entirely part of thoracic region." [UBERON:cjm] subset: organ_slim is_a: UBERON:0002370 ! implied link automatically realized ! thymus is_a: UBERON:0005178 ! implied link automatically realized ! thoracic cavity organ relationship: part_of UBERON:0002224 intersection_of: UBERON:0002370 ! thymus intersection_of: part_of UBERON:0002224 {source="MA-modified"} ! thoracic cavity [Term] id: UBERON:0009116 name: thymoid def: "A thymus-like lympho-epithelial structures, in the tips of the gill filaments and the neighbouring secondary lamellae (both within the gill basket) of lamprey larvae." [PMID:21293377] comment: Genes: FOXN1 subset: organ_slim is_a: UBERON:0002368 ! endocrine gland is_a: UBERON:0003295 ! implied link automatically realized ! pharyngeal gland is_a: UBERON:0004177 ! implied link automatically realized ! hemopoietic organ is_a: UBERON:0005057 ! implied link automatically realized ! immune organ is_a: UBERON:0005058 ! implied link automatically realized ! hemolymphoid system gland is_a: UBERON:0006925 ! implied link automatically realized ! digestive gland relationship: part_of UBERON:0002390 ! hematopoietic system relationship: part_of UBERON:0002405 ! immune system relationship: part_of UBERON:0009101 ! ammocoete relationship: part_of UBERON:0009119 ! branchial basket [Term] id: UBERON:0009117 name: indifferent gonad def: "A gonad prior to differentiating into a definitive testis or ovary." [http://www.medterms.com/script/main/art.asp?articlekey=8981] comment: typically part of the embryo - however, in male tammar wallabies the gonads are indifferent at the neonatal stage[8827321] subset: organ_slim xref: EHDAA2:0000716 xref: ncithesaurus:Indifferent_Gonad is_a: UBERON:0000991 ! gonad disjoint_from: UBERON:0000473 ! testis disjoint_from: UBERON:0000992 ! female gonad relationship: part_of UBERON:0009196 ! indifferent external genitalia [Term] id: UBERON:0009118 name: marsupial pouch synonym: "pouch" BROAD [] is_a: UBERON:0005156 ! reproductive structure [Term] id: UBERON:0009119 name: branchial basket def: "the network-like cartilaginous skeleton of the gill region of Petromyzontiformes and Holocephali" [http://www.briancoad.com/dictionary/DicPics/branchial%20basket.htm] synonym: "gill basket" EXACT [http://www.briancoad.com/dictionary/DicPics/branchial%20basket.htm] is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004765 ! skeletal element relationship: has_part UBERON:0002418 ! cartilage tissue relationship: part_of UBERON:0001042 ! chordate pharynx [Term] id: UBERON:0009120 name: gill filament def: "Portion of tissue that projects outward from the gill and is a thread-like, soft, red respiratory and excretory structure." [http:www.briancoad.com/Dictionary/G.htm, ZFIN:ZDB-PUB-961014-576] synonym: "gill filaments" EXACT PLURAL [ZFA:0000667] xref: BTO:0002150 xref: TAO:0000667 xref: ZFA:0000667 is_a: UBERON:0000479 {source="ZFA"} ! tissue is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: part_of UBERON:0002535 {source="ZFA"} ! gill [Term] id: UBERON:0009121 name: vomeronasal nerve def: "Nerve carrying fibers from the vomeronasal organ to the accessory olfactory bulb[AAO]. originates in the olfactory epithelial cells of Jacobson's organ, and that passes through the submucous tissue of the nasal septum and the cribriform plate of the ethmoid bone to the olfactory bulb[BTO]." [AAO:DSM, BTO:0001351] comment: in the human this disappears before birth xref: AAO:0010608 xref: BTO:0001351 xref: NIF_GrossAnatomy:nlx_anat_1005018 is_a: UBERON:0001785 {source="NIF_GrossAnatomy"} ! cranial nerve relationship: develops_from UBERON:0003050 {source="ISBN10:0471888893"} ! olfactory placode relationship: overlaps UBERON:0003367 {source="Wikipedia"} ! epithelium of vomeronasal organ [Term] id: UBERON:0009122 name: adenohypophyseal placode def: "The adenohypophyseal placode forms the anterior lobe of the pituitary gland and gives rise to the endocrine secretory cells of the pituitary" [http://www.ncbi.nlm.nih.gov/books/NBK53175/] comment: Editor notes: consider adding more detailed spatial placement - e.g. oral ectoderm and/or rostal ectoderm. Addtional notes: Fate-mapping studies in amphibian, chick and mouse embryos (Eagleson et al., 1986; 1995; Couly and Le Douarin, 1985; Cobos et al., 2001; Osumi-Yamachita et al., 1994; Kawamura et al., 2002) have shown that the cells contributing to the adenohypophysis develop at the midline of the anterior neural ridge, which delineates the rostral boundary of the neural plate, a region devoid of neural crest. The anterior neural ridge also gives rise to the olfactory placodes and some forebrain tissues including the olfactory bulbs (reviewed in Papalopulu, 1995). Ablation of this region in chick embryos at the 2-4 somite stage confirmed these lineage analyses as it prevented formation of Rathke’s pouch and any further pituitary development (elAmraoui and Dubois, 1993). Upon head folding, the oral ectoderm cells of the adenohypophyseal placode invaginate towards the prospective ventral diencephalon to form Rathke’s pouch, the anlage of the adenohypophysis. Rathke’s pouch starts as an invagination of the oral ectoderm in response to inductive signals from the prospective diencephalon. The region of the diencephalon above the pouch is known as the infundibulum and forms the posterior lobe of the pituitary or neurohypohysis (Figure 3). While in most basal fish and tetrapods the adenohypophyseal anlagen invaginates to form Rathke’s pouch, in teleost fish the adenohypophyseal placode does not invaginate but rather maintains its initial organization forming a solid structure in the head (reviewed in Pogoda and Hammerschmidt; 2009) synonym: "pituitary placode" RELATED [ZFA:0001198] xref: TAO:0001198 xref: XAO:0004208 xref: ZFA:0001198 is_a: UBERON:0002546 {notes="non-neurogenic", source="NBK53175"} ! cranial placode relationship: develops_from UBERON:0005497 {source="ZFA"} ! non-neural ectoderm [Term] id: UBERON:0009123 name: otic cup is_a: UBERON:0005423 ! developing anatomical structure relationship: develops_from UBERON:0003069 {source="NBK53175"} ! otic placode [Term] id: UBERON:0009124 name: geniculate placode def: "Rostralmost epibranchial placode. Associated with 1st branchial cleft." [NBK:NBK53175] synonym: "facial epibranchial placode" EXACT [XAO:0004211] synonym: "facial placode" EXACT [ZFA:0001295] xref: TAO:0001295 xref: XAO:0004211 xref: ZFA:0001295 is_a: UBERON:0003078 {source="ZFA"} ! epibranchial placode [Term] id: UBERON:0009125 name: petrosal placode def: "Epibranchial placode between geniculate and nodose. Associated with 2nd branchial cleft." [NBK:NBK53175] synonym: "glossopharyngeal epibranchial placode" EXACT [XAO:0004212] synonym: "glossopharyngeal placode" EXACT [ZFA:0001296] xref: TAO:0001296 xref: XAO:0004212 xref: ZFA:0001296 is_a: UBERON:0003078 {source="ZFA"} ! epibranchial placode [Term] id: UBERON:0009126 name: nodosal placode def: "Caudalmost epibranchial placode. Associated with 3rd branchial cleft." [NBK:NBK53175] synonym: "nodose placode" EXACT [XAO:0004213] synonym: "vagal epibranchial placode" EXACT [XAO:0004213] xref: XAO:0004213 is_a: UBERON:0003078 {source="NBK53175"} ! epibranchial placode [Term] id: UBERON:0009127 name: epibranchial ganglion def: "Cranial ganglion which develops from an epibranchial placode." [PMID:20133851, ZFIN:curator] comment: Epibranchial ganglia orchestrate the development of the cranial neurogenic crest synonym: "epibranchial ganglia" EXACT PLURAL [ZFA:0001555] xref: TAO:0001555 xref: ZFA:0001555 xref: ZFIN:ZDB-ANAT-070928-157 is_a: UBERON:0003213 {source="ZFA"} ! cranial ganglion relationship: develops_from UBERON:0003078 {source="NBK53175"} ! epibranchial placode [Term] id: UBERON:0009128 name: lateral line placode synonym: "lateral line placodes" RELATED PLURAL [XAO:0000440] xref: XAO:0000440 is_a: UBERON:0009955 {source="NBK53175"} ! neurogenic placode [Term] id: UBERON:0009129 name: right atrium endocardium synonym: "endocardium of right atrium" EXACT [FMA:7281] xref: EHDAA2:0000274 xref: FMA:7281 xref: SCTID:3194006 is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium is_a: UBERON:0002166 ! implied link automatically realized ! endocardium of atrium is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue is_a: UBERON:0006914 ! implied link automatically realized ! squamous epithelium relationship: part_of UBERON:0002078 intersection_of: UBERON:0002165 ! endocardium intersection_of: part_of UBERON:0002078 ! right atrium relationship: develops_from UBERON:0005092 {source="EHDAA2"} ! right horn of sinus venosus relationship: part_of UBERON:0006218 {source="EHDAA2"} ! common atrial chamber [Term] id: UBERON:0009130 name: dorsal meso-duodenum xref: EHDAA2:0000411 xref: SCTID:361433003 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002050 {source="EHDAA2"} ! embryonic structure relationship: part_of UBERON:0005712 {source="EHDAA2"} ! midgut duodenum mesentery [Term] id: UBERON:0009131 name: midbrain vesicle xref: EHDAA2:0001103 xref: SCTID:361481005 is_obsolete: true [Term] id: UBERON:0009132 name: peroneus xref: EHDAA:8297 xref: EHDAA2:0001450 xref: SCTID:181694005 is_a: UBERON:0001383 ! muscle of leg is_a: UBERON:0002036 {source="EHDAA2"} ! striated muscle tissue is_a: UBERON:0004256 ! implied link automatically realized ! hindlimb zeugopod muscle relationship: part_of UBERON:0003823 {source="EHDAA2"} ! hindlimb zeugopod [Term] id: UBERON:0009133 name: pleuroperitoneal membrane alt_id: UBERON:0009146 def: "A fold of tissue which extends into the peritoneal cavity of the developing embryo and participates in the separation of the pleural and peritoneal cavities." [http://medical-dictionary.thefreedictionary.com/pleuroperitoneal+membrane, Wikipedia:Pleuroperitoneal] synonym: "pleuroperitoneal membranes" EXACT PLURAL [EHDAA2:0001483] xref: EHDAA2:0001483 xref: EMAPA:17709 xref: ncithesaurus:Pleuroperitoneal_Membrane xref: SCTID:361429005 is_a: UBERON:0000479 {source="EHDAA2"} ! tissue is_a: UBERON:0002050 {source="EHDAA2"} ! embryonic structure is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue relationship: adjacent_to UBERON:0001179 ! peritoneal cavity relationship: adjacent_to UBERON:0002402 ! pleural cavity [Term] id: UBERON:0009138 name: right common common cardinal vein synonym: "common cardinal vein right" EXACT [EHDAA2:0004535] xref: EHDAA2:0004535 xref: FMA:70310 xref: SCTID:361507009 is_a: UBERON:0002064 {source="FMA"} ! common cardinal vein relationship: part_of UBERON:0004344 {source="EHDAA2"} ! cardinal vein [Term] id: UBERON:0009139 name: right posterior cardinal vein xref: EHDAA2:0004536 xref: SCTID:361505001 is_a: UBERON:0001638 {source="EHDAA2"} ! vein is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue relationship: part_of UBERON:0004344 {source="EHDAA2"} ! cardinal vein [Term] id: UBERON:0009140 name: right subcardinal vein xref: EHDAA2:0004538 xref: SCTID:361452009 is_a: UBERON:0001638 {source="EHDAA2"} ! vein is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue relationship: part_of UBERON:0004344 {source="EHDAA2"} ! cardinal vein [Term] id: UBERON:0009141 name: vein of head and neck xref: EHDAA2:0004542 xref: SCTID:32945007 is_a: UBERON:0000480 {source="EHDAA2"} ! anatomical group is_a: UBERON:0001638 {source="EHDAA2"} ! vein relationship: part_of UBERON:0004581 {source="EHDAA2"} ! systemic venous system relationship: part_of UBERON:0004582 {source="EHDAA2"} ! venous system [Term] id: UBERON:0009142 name: entire mesenchyme alt_id: UBERON:0003313 comment: consider adding new class (EMAPA:16097) for mesenchyme of embryo (some mesenchyme is extraembryonic - e.g. amnion mesoderm) xref: EHDAA:177 xref: EHDAA2:0001113 xref: EMAPA:16097 is_a: UBERON:0000481 {source="EHDAA2"} ! multi-tissue structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: develops_from UBERON:0000926 {source="EHDAA2"} ! mesoderm [Term] id: UBERON:0009143 name: esophageal region synonym: "oesophageal region" EXACT [EHDAA2:0000654] xref: EHDAA2:0000654 xref: EMAPA:16700 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0001041 {source="EHDAA2"} ! foregut [Term] id: UBERON:0009145 name: pharyngeal region xref: EHDAA2:0001454 xref: EMAPA:16549 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0001041 {source="EHDAA2"} ! foregut relationship: part_of UBERON:0001557 {source="EHDAA2"} ! upper respiratory tract [Term] id: UBERON:0009149 name: foramen primum def: "opening in the septum primum between the two atria of the embryonic heart." [http://medical-dictionary.thefreedictionary.com/foramen+primum, Wikipedia:Ostium_primum] synonym: "interatrial foramen primum" EXACT [Wikipedia:Ostium_primum] synonym: "ostium primum" EXACT [http://medical-dictionary.thefreedictionary.com/foramen+primum] synonym: "primary interatrial foramen" EXACT [Wikipedia:Ostium_primum] xref: EHDAA2:0001826 xref: EMAPA:17012 xref: ncithesaurus:Foramen_Primum xref: SCTID:308852002 is_a: UBERON:0004111 {source="EHDAA2"} ! anatomical conduit is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0002085 {source="EHDAA2"} ! interatrial septum relationship: part_of UBERON:0004154 {source="EHDAA2"} ! septum primum [Term] id: UBERON:0009191 name: sphenoid bone pre-cartilage condensation xref: EHDAA2:0003446 xref: EMAPA:18015 is_a: UBERON:0000481 {source="EHDAA2"} ! multi-tissue structure is_a: UBERON:0005866 {source="EHDAA2"} ! pre-cartilage condensation relationship: part_of UBERON:0001703 {source="EHDAA2"} ! neurocranium relationship: part_of UBERON:0002241 {source="EHDAA2"} ! chondrocranium [Term] id: UBERON:0009192 name: basisphenoid pre-cartilage condensation synonym: "basi-sphenoid pre-cartilage condensation" EXACT [EHDAA2:0003447] xref: EHDAA2:0003447 xref: EMAPA:18013 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0005866 {source="EHDAA2"} ! pre-cartilage condensation is_a: UBERON:0006904 ! implied link automatically realized ! mesenchyme derived from head mesoderm is_a: UBERON:0007213 ! implied link automatically realized ! mesenchyme derived from head neural crest relationship: develops_from UBERON:0006904 {source="EHDAA2"} ! mesenchyme derived from head mesoderm relationship: develops_from UBERON:0007213 {source="EHDAA2"} ! mesenchyme derived from head neural crest relationship: part_of UBERON:0002241 {source="EHDAA2"} ! chondrocranium [Term] id: UBERON:0009193 name: sphenoid bone cartilage condensation xref: EHDAA2:0001888 is_a: UBERON:0005863 {source="EHDAA2"} ! cartilaginous condensation relationship: develops_from UBERON:0009191 ! sphenoid bone pre-cartilage condensation relationship: part_of UBERON:0002241 {source="EHDAA2"} ! chondrocranium [Term] id: UBERON:0009194 name: basisphenoid cartilage condenstion xref: EHDAA2:0000166 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0005863 {source="EHDAA2"} ! cartilaginous condensation relationship: develops_from UBERON:0009192 {source="EHDAA2"} ! basisphenoid pre-cartilage condensation relationship: part_of UBERON:0009193 {source="EHDAA2"} ! sphenoid bone cartilage condensation [Term] id: UBERON:0009195 name: anal membrane comment: During the 7th week the urorectal septum divides the cloacal membrane into a urogenital membrane (ventrally) and an anal membrane (dorsally) [http://www.embryology.ch/anglais/ugenital/genitexterne01.html] xref: EHDAA2:0004018 xref: ncithesaurus:Anal_Membrane is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002050 ! embryonic structure relationship: develops_from UBERON:0006217 {source="EHDAA2"} ! cloacal membrane relationship: part_of UBERON:0001353 {source="EHDAA2"} ! anal region [Term] id: UBERON:0009196 name: indifferent external genitalia subset: organ_slim xref: EHDAA2:0004021 is_a: UBERON:0004176 {source="cjm"} ! external reproductive organ disjoint_from: UBERON:0004053 ! external male genitalia disjoint_from: UBERON:0005056 ! external female genitalia [Term] id: UBERON:0009197 name: basioccipital pre-cartilage condensation xref: EHDAA:6033 xref: EHDAA2:0000165 xref: EMAPA:18012 xref: OG:0000959 is_a: UBERON:0005866 {source="EHDAA2"} ! pre-cartilage condensation relationship: develops_into UBERON:0001692 {source="EHDAA2"} ! basioccipital bone relationship: part_of UBERON:0002241 {source="EMAPA"} ! chondrocranium [Term] id: UBERON:0009198 name: craniofacial suture def: "any suture between cranial and/or facial bones." [GO:0097094] xref: GO:0097094 is_a: UBERON:0000969 ! joint connecting hardened body parts [Term] id: UBERON:0009199 name: facial suture def: "any suture between facial bones." [GO:0097096] is_a: UBERON:0009198 {source="GO"} ! craniofacial suture [Term] id: UBERON:0009200 name: limb epidermis def: "The limb epidermis is the outer epithelial layer of the limb, it is a complex stratified squamous epithelium." [GOC:dph, GOC:sdb_2009, GOC:tb] is_a: UBERON:0001003 ! implied link automatically realized ! epidermis is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0002101 intersection_of: UBERON:0001003 ! epidermis intersection_of: part_of UBERON:0002101 ! limb [Term] id: UBERON:0009201 name: nephric duct def: "A nephric duct is a tube that drains a primitive kidney[GO]." [GO:0072176] comment: pronephric duct or mesonephric duct is_a: UBERON:0000058 ! duct is_a: UBERON:0003914 {source="EHDAA2"} ! epithelial tube is_a: UBERON:0004819 ! implied link automatically realized ! kidney epithelium is_a: UBERON:0006553 ! implied link automatically realized ! renal duct is_a: UBERON:0006555 ! implied link automatically realized ! excretory tube relationship: part_of UBERON:0002113 ! kidney [Term] id: UBERON:0009202 name: vasa recta descending limb xref: KUPO:0001002 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0004726 {source="KUPO"} ! vasa recta [Term] id: UBERON:0009203 name: nasal suture def: "a suture joining the nasal bones." [Wikipedia:Internasal_suture] comment: SNOMED has different terms for nasal and internasal synonym: "internasal suture" EXACT [FMA:52959, GO:0097097] synonym: "internasal suture of skull" EXACT [FMA:52959] synonym: "nasal suture of skull" EXACT [SCTID:368992007] synonym: "sutura internasalis" EXACT [Wikipedia:Internasal_suture] xref: FMA:52959 xref: SCTID:368990004 xref: SCTID:368992007 is_a: UBERON:0009199 {source="GO"} ! facial suture relationship: adjacent_to UBERON:0001681 ! nasal bone [Term] id: UBERON:0009204 name: medial nasal process mesenchyme xref: EHDAA2:0001077 xref: EMAPA:16810 is_a: UBERON:0003104 {source="EHDAA2"} ! mesenchyme is_a: UBERON:0009501 ! implied link automatically realized ! mesenchyme of fronto-nasal process relationship: part_of UBERON:0004068 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0004068 ! medial nasal prominence relationship: develops_from UBERON:0007213 {source="EHDAA2"} ! mesenchyme derived from head neural crest relationship: part_of UBERON:0004068 {source="EHDAA2"} ! medial nasal prominence [Term] id: UBERON:0009205 name: lateral nasal process mesenchyme synonym: "mesenchyme of latero-nasal process" EXACT [EMAPA:16807] xref: EHDAA2:0000917 xref: EMAPA:16807 is_a: UBERON:0009501 ! implied link automatically realized ! mesenchyme of fronto-nasal process relationship: part_of UBERON:0004067 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0004067 ! lateral nasal prominence relationship: develops_from UBERON:0007213 {source="EHDAA2"} ! mesenchyme derived from head neural crest [Term] id: UBERON:0009206 name: lateral nasal process surface ectoderm synonym: "ectoderm of latero-nasal process" EXACT [EMAPA:16806] xref: EHDAA2:0000918 xref: EMAPA:16806 is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium is_a: UBERON:0000924 ! implied link automatically realized ! ectoderm is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0004067 intersection_of: UBERON:0000924 ! ectoderm intersection_of: part_of UBERON:0004067 ! lateral nasal prominence relationship: develops_from UBERON:0000076 {source="EHDAA2"} ! external ectoderm relationship: part_of UBERON:0000076 {source="EHDAA2"} ! external ectoderm [Term] id: UBERON:0009207 name: geschmacksstreifen def: "Area between hard and soft palates rich in tastebuds." [UBERON:cjm] is_a: UBERON:0000064 ! organ part is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure relationship: part_of UBERON:0001716 ! secondary palate [Term] id: UBERON:0009210 name: branchial membrane def: "a thin fold of ectoderm and endoderm that separates the pharyngeal pouches from the branchial clefts in a developing embryo." [http://musom.marshall.edu/anatomy/grosshom/z_devbranc.html] synonym: "pharyngeal membrane" EXACT [] xref: ncithesaurus:Pharyngeal_Membrane is_a: UBERON:0002050 ! embryonic structure relationship: adjacent_to UBERON:0004117 ! pharyngeal pouch relationship: adjacent_to UBERON:0005879 ! branchial groove relationship: has_part UBERON:0000924 ! ectoderm relationship: has_part UBERON:0000925 ! endoderm [Term] id: UBERON:0009213 name: branchial membrane of 1st arch def: "separates the first pharyngeal groove from the first pharyngeal pouch." [ISBN10:1416037055] comment: check EMAPA - 3 terms appear to match synonym: "1st branchial membrane" EXACT [EMAPA:16992] synonym: "1st pharyngeal membrane" EXACT [OG:0001427] synonym: "future tympanic membrane" EXACT [EMAPA:17281] synonym: "tympanic membrane primordium" EXACT [ISBN10:1416037055] xref: EHDAA:3788 xref: EMAPA:16121 xref: EMAPA:16992 xref: EMAPA:17281 xref: OG:0001427 is_a: UBERON:0009210 ! branchial membrane relationship: adjacent_to UBERON:0005872 ! 1st arch branchial groove relationship: adjacent_to UBERON:0007122 ! pharyngeal pouch 1 relationship: part_of UBERON:0004362 {source="EMAPA"} ! mandibular arch [Term] id: UBERON:0009215 name: branchial membrane of 2nd arch synonym: "2nd pharyngeal membrane" EXACT [OG:0000877] xref: EMAPA:16273 xref: OG:0000877 is_a: UBERON:0009210 ! branchial membrane relationship: adjacent_to UBERON:0005873 ! 2nd arch branchial groove relationship: adjacent_to UBERON:0007123 ! pharyngeal pouch 2 relationship: part_of UBERON:0003066 {source="EMAPA"} ! hyoid arch [Term] id: UBERON:0009216 name: branchial membrane of 3rd arch synonym: "3rd pharyngeal membrane" EXACT [OG:0000876] xref: EMAPA:16583 xref: OG:0000876 is_a: UBERON:0009210 ! branchial membrane relationship: adjacent_to UBERON:0005874 ! 3rd arch branchial groove relationship: adjacent_to UBERON:0007124 ! pharyngeal pouch 3 relationship: part_of UBERON:0003114 {source="EMAPA"} ! pharyngeal arch 3 [Term] id: UBERON:0009217 name: branchial membrane of 4th arch synonym: "4th pharyngeal membrane" EXACT [UBERON:cjm] xref: EMAPA:16763 is_a: UBERON:0009210 ! branchial membrane relationship: adjacent_to UBERON:0005875 ! 4th arch branchial groove relationship: adjacent_to UBERON:0007125 ! pharyngeal pouch 4 relationship: part_of UBERON:0003115 {source="EMAPA"} ! pharyngeal arch 4 [Term] id: UBERON:0009291 name: cartilaginous centrum of vertebra xref: SCTID:317278007 is_a: UBERON:0001075 ! body of vertebra is_a: UBERON:0007844 ! cartilaginous element [Term] id: UBERON:0009292 name: embryonic nasal process xref: EHDAA:4776 xref: EMAPA:16680 xref: SCTID:308881001 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000033 ! head relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0009293 name: embryonic frontal process xref: EHDAA:4780 xref: EMAPA:16802 xref: OG:0001323 xref: SCTID:346265009 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0004066 {source="EMAPA"} ! frontonasal prominence [Term] id: UBERON:0009468 name: basiotic bone def: "a small bone in the fetus between the basilar process and the basisphenoid." [http://medical-dictionary.thefreedictionary.com/basiotic+bone] xref: SCTID:95946002 is_a: UBERON:0001474 ! bone is_a: UBERON:0002050 ! implied link automatically realized ! embryonic structure relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0009470 name: postsphenoidal bone def: "the posterior portion of the sphenoid bone developed in five separate parts consisting of a central basisphenoid, the two alisphenoids, and the two medial pterygoid laminae." [http://www.merriam-webster.com/dictionary/postsphenoid, Wikipedia:Ossification_of_sphenoid#Postsphenoid] xref: SCTID:95950009 is_a: UBERON:0003465 {source="cjm"} ! chondrocranium bone relationship: part_of UBERON:0001677 {source="cjm"} ! sphenoid bone [Term] id: UBERON:0009471 name: dorsum of tongue def: "the superior surface of the tongue divided by the sulcus terminalis into an anterior two-thirds, the presulcal part (pars presulcalis). and a posterior one-third, the postsulcal part (pars postsulcalis)." [http://www.drugs.com/dict/dorsum-of-tongue.html] synonym: "dorsal tongue" EXACT [FMA:54651] synonym: "dorsum linguae" EXACT [http://www.drugs.com/dict/dorsum-of-tongue.html] synonym: "tongue dorsum" EXACT [FMA:54651] xref: FMA:54651 xref: ncithesaurus:Dorsum_of_the_Tongue xref: SCTID:66938003 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001723 {source="FMA"} ! tongue [Term] id: UBERON:0009472 name: axilla def: "The axilla is the area on the human body directly under the joint where the arm connects to the shoulder." [Wikipedia:Axilla] synonym: "arm pit" EXACT [Wikipedia:Axilla] synonym: "armpit" EXACT [Wikipedia:Axilla] synonym: "armpits" RELATED [Wikipedia:Axilla] synonym: "axillae" RELATED [Wikipedia:Axilla] synonym: "axillary region" EXACT [FMA:24864] synonym: "axillary region" RELATED [Wikipedia:Axilla] synonym: "oxter" RELATED [Wikipedia:Axilla] synonym: "regio axillaris" EXACT [FMA:TA] synonym: "underarm" RELATED [Wikipedia:Axilla] xref: FMA:24864 xref: MESH:A.01.378.800.090 xref: ncithesaurus:Axilla is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0001421 {source="FMA"} ! pectoral girdle [Term] id: UBERON:0009473 name: parapodium def: "either of a pair of fleshy lateral processes borne by most segments of a polychaete worm." [http://www.merriam-webster.com/dictionary/parapodium?show=0&t=1314575672, Wikipedia:Parapodium] synonym: "paradpod" EXACT [] synonym: "paradpodia" RELATED PLURAL [] synonym: "polychaete paradpodium" EXACT [] is_a: UBERON:0000026 ! appendage relationship: part_of UBERON:0000914 ! organismal segment [Term] id: UBERON:0009474 name: ascidian ampulla synonym: "ampulla" BROAD [] is_a: UBERON:0000026 ! appendage [Term] id: UBERON:0009475 name: ampullar siphon is_a: UBERON:0000026 ! appendage relationship: part_of UBERON:0009474 ! ascidian ampulla [Term] id: UBERON:0009476 name: madreporite def: "The madreporite is an opening used to filter water into the water vascular system of echinoderms. It is visible as a small red or yellow button-like structure, looking like a small wart, on the aboral surface of the central disk of a sea star. Close up, it is visibly structured, resembling a \"madrepore\" colony. From this, it derives its name. The water vascular system of the sea star consists of a series of seawater-filled ducts that function in locomotion and feeding and respiration. Its main parts are the madreporite, the stone canal, the ring canal, the radial canals, the lateral canals, and the tube feet. The sieve-like madreporite allows entry of seawater into the stone canal, which connects to the ring canal around the mouth. Five or more radial canals extend from the ring canal, one in each arm above the ambulacral groove. From the radial canals extend many lateral canals, each of which leads to a tube foot. Each tube foot is a closed cylinder with muscular walls, having a sucker at the outer end and a bulb-like ampulla at its inner end within the body cavity." [Wikipedia:Madreporite] is_a: UBERON:0003978 ! valve relationship: part_of UBERON:0008251 {source="BTO"} ! water vascular system relationship: part_of UBERON:0008259 ! aboral surface [Term] id: UBERON:0009477 name: associated mesenchyme of otic placode subset: emapa_ehdaa2 xref: EHDAA2:0001340 xref: EMAPA:16196 is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue is_a: UBERON:0007213 ! implied link automatically realized ! mesenchyme derived from head neural crest relationship: part_of UBERON:0003069 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0003069 ! otic placode relationship: develops_from UBERON:0007213 ! mesenchyme derived from head neural crest [Term] id: UBERON:0009478 name: associated mesenchyme of midgut subset: emapa_ehdaa2 xref: EHDAA2:0001186 xref: EMAPA:16256 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme relationship: part_of UBERON:0001045 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001045 ! midgut [Term] id: UBERON:0009479 name: ectoderm of buccopharyngeal membrane subset: emapa_ehdaa2 xref: EHDAA2:0000190 xref: EMAPA:16260 is_a: UBERON:0000924 ! implied link automatically realized ! ectoderm relationship: part_of UBERON:0006211 intersection_of: UBERON:0000924 ! ectoderm intersection_of: part_of UBERON:0006211 ! buccopharyngeal membrane [Term] id: UBERON:0009480 name: endoderm of buccopharyngeal membrane subset: emapa_ehdaa2 xref: EHDAA2:0000191 xref: EMAPA:16261 is_a: UBERON:0000925 ! implied link automatically realized ! endoderm relationship: part_of UBERON:0006211 intersection_of: UBERON:0000925 ! endoderm intersection_of: part_of UBERON:0006211 ! buccopharyngeal membrane [Term] id: UBERON:0009481 name: cavity of pericardio-peritoneal canal subset: emapa_ehdaa2 xref: EHDAA2:0001441 xref: EMAPA:16283 is_a: UBERON:0005082 ! implied link automatically realized ! tube lumen relationship: part_of UBERON:0006275 intersection_of: UBERON:0005082 ! tube lumen intersection_of: part_of UBERON:0006275 ! pericardio-peritoneal canal [Term] id: UBERON:0009482 name: associated mesenchyme of foregut-midgut junction subset: emapa_ehdaa2 xref: EHDAA2:0000570 xref: EMAPA:16364 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme relationship: part_of UBERON:0006235 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0006235 ! foregut-midgut junction [Term] id: UBERON:0009483 name: mesentery of foregut-midgut junction subset: emapa_ehdaa2 xref: EHDAA2:0000575 xref: EMAPA:16365 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002095 ! implied link automatically realized ! mesentery relationship: part_of UBERON:0006235 intersection_of: UBERON:0002095 ! mesentery intersection_of: part_of UBERON:0006235 ! foregut-midgut junction [Term] id: UBERON:0009484 name: dorsal mesentery of mesentery of foregut-midgut junction subset: emapa_ehdaa2 xref: EHDAA2:0000571 xref: EMAPA:16366 is_a: UBERON:0009483 ! mesentery of foregut-midgut junction [Term] id: UBERON:0009494 name: pharyngeal arch mesenchyme def: "primordial embryonic connective tissue associated with the branchial arches, consisting of mesenchymal cells supported in interlaminar jelly, that derive mostly from the mesoderm and contribute to facial and cranial nerve-associated structures." [MP:0011262] synonym: "branchial arch mesenchyme" EXACT [MP:0011262] synonym: "pharyngeal arch associated mesenchyme" EXACT [EHDAA2:0001459] xref: EHDAA2:0001459 xref: EMAPA:16550 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme relationship: part_of UBERON:0009145 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0009145 ! pharyngeal region [Term] id: UBERON:0009495 name: extrahepatic part of biliary bud subset: emapa_ehdaa2 xref: EHDAA2:0000172 xref: EMAPA:16562 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005911 ! implied link automatically realized ! endo-epithelium is_a: UBERON:0007499 ! epithelial sac relationship: develops_from UBERON:0004912 {source="EHDAA2"} ! biliary bud [Term] id: UBERON:0009496 name: intrahepatic part of biliary bud subset: emapa_ehdaa2 xref: EHDAA2:0000173 xref: EMAPA:16563 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005911 ! implied link automatically realized ! endo-epithelium is_a: UBERON:0007499 ! epithelial sac relationship: develops_from UBERON:0004912 {source="EHDAA2"} ! biliary bud [Term] id: UBERON:0009497 name: epithelium of foregut-midgut junction subset: emapa_ehdaa2 xref: EHDAA2:0000573 xref: EMAPA:16564 is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0003929 ! implied link automatically realized ! gut epithelium relationship: part_of UBERON:0006235 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0006235 ! foregut-midgut junction [Term] id: UBERON:0009499 name: parietal of mesothelium of pericardio-peritoneal canal subset: emapa_ehdaa2 xref: EHDAA2:0001409 xref: EMAPA:16590 is_a: UBERON:0001136 ! mesothelium is_a: UBERON:0007185 ! implied link automatically realized ! pericardio-peritoneal canal mesothelium relationship: part_of UBERON:0007185 ! pericardio-peritoneal canal mesothelium [Term] id: UBERON:0009500 name: associated mesenchyme of otocyst subset: emapa_ehdaa2 xref: EHDAA2:0001343 xref: EMAPA:16670 is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue relationship: part_of UBERON:0003051 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0003051 ! ear vesicle relationship: develops_from UBERON:0009477 {source="EHDAA2"} ! associated mesenchyme of otic placode [Term] id: UBERON:0009501 name: mesenchyme of fronto-nasal process def: "the embryonic connective tissue made up of loosely aggregated mesenchymal cells, supported by interlaminar jelly, that gives rise to the frontonasal region of the head" [MP:0011266] subset: emapa_ehdaa2 synonym: "frontonasal mesenchyme" EXACT [MP:0011266] synonym: "naso-frontal mesenchyme" EXACT [MP:0011266] xref: EHDAA2:0004109 xref: EMAPA:16683 is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue is_a: UBERON:0007213 ! implied link automatically realized ! mesenchyme derived from head neural crest relationship: part_of UBERON:0004066 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0004066 ! frontonasal prominence relationship: develops_from UBERON:0007213 ! mesenchyme derived from head neural crest [Term] id: UBERON:0009502 name: ventral mesentery of mesentery of foregut-midgut junction subset: emapa_ehdaa2 xref: EHDAA2:0000576 xref: EMAPA:16714 is_a: UBERON:0009483 ! mesentery of foregut-midgut junction [Term] id: UBERON:0009503 name: associated mesenchyme of hindgut subset: emapa_ehdaa2 xref: EHDAA2:0000780 xref: EMAPA:16716 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme relationship: part_of UBERON:0001046 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001046 ! hindgut [Term] id: UBERON:0009504 name: associated mesenchyme of main bronchus subset: emapa_ehdaa2 xref: EHDAA2:0001045 xref: EMAPA:16850 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005256 ! implied link automatically realized ! trunk mesenchyme relationship: part_of UBERON:0002182 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0002182 ! main bronchus [Term] id: UBERON:0009505 name: associated mesenchyme of trachea subset: emapa_ehdaa2 xref: EHDAA2:0002067 xref: EMAPA:16854 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005256 ! implied link automatically realized ! trunk mesenchyme relationship: part_of UBERON:0003126 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0003126 ! trachea [Term] id: UBERON:0009506 name: associated mesenchyme of middle ear subset: emapa_ehdaa2 xref: EHDAA2:0001182 xref: EMAPA:17001 is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme relationship: part_of UBERON:0001756 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001756 ! middle ear relationship: develops_from UBERON:0005689 ! 2nd arch mesenchyme [Term] id: UBERON:0009521 name: anal membrane endodermal component subset: emapa_ehdaa2 xref: EHDAA2:0004020 xref: EMAPA:17177 is_a: UBERON:0003260 ! implied link automatically realized ! endoderm of hindgut relationship: part_of UBERON:0001353 intersection_of: UBERON:0000925 ! endoderm intersection_of: part_of UBERON:0001353 ! anal region [Term] id: UBERON:0009522 name: lateral lingual swelling epithelium subset: emapa_ehdaa2 xref: EHDAA2:0000913 xref: EMAPA:17190 is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue relationship: part_of UBERON:0006757 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0006757 ! lateral lingual swelling [Term] id: UBERON:0009523 name: mesenchyme of handplate subset: emapa_ehdaa2 xref: EHDAA2:0000731 xref: EMAPA:17248 is_a: UBERON:0003413 ! implied link automatically realized ! forelimb bud mesenchyme relationship: part_of UBERON:0006875 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0006875 ! handplate relationship: develops_from UBERON:0003413 ! forelimb bud mesenchyme [Term] id: UBERON:0009526 name: mesenchyme of maxillary process subset: emapa_ehdaa2 xref: EHDAA2:0001071 xref: EMAPA:17361 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue relationship: part_of UBERON:0005868 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0005868 ! maxillary prominence [Term] id: UBERON:0009536 name: vascular element of left lung subset: emapa_ehdaa2 xref: EHDAA2:0000963 xref: EMAPA:17660 is_a: UBERON:0000102 ! implied link automatically realized ! lung vasculature is_a: UBERON:0005629 ! implied link automatically realized ! vascular plexus relationship: part_of UBERON:0002168 intersection_of: UBERON:0005629 ! vascular plexus intersection_of: part_of UBERON:0002168 ! left lung [Term] id: UBERON:0009537 name: vascular element of right lung subset: emapa_ehdaa2 xref: EHDAA2:0001757 xref: EMAPA:17668 is_a: UBERON:0000102 ! implied link automatically realized ! lung vasculature is_a: UBERON:0005629 ! implied link automatically realized ! vascular plexus relationship: part_of UBERON:0002167 intersection_of: UBERON:0005629 ! vascular plexus intersection_of: part_of UBERON:0002167 ! right lung [Term] id: UBERON:0009538 name: mesenchyme of sublingual gland primordium subset: emapa_ehdaa2 xref: EHDAA2:0001937 xref: EMAPA:17754 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue is_a: UBERON:0007213 ! implied link automatically realized ! mesenchyme derived from head neural crest relationship: part_of UBERON:0006297 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0006297 ! sublingual gland primordium relationship: develops_from UBERON:0003324 ! mesenchyme of lower jaw [Term] id: UBERON:0009539 name: mesenchyme of submandibular gland primordium subset: emapa_ehdaa2 xref: EHDAA2:0001941 xref: EMAPA:17757 is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue is_a: UBERON:0007213 ! implied link automatically realized ! mesenchyme derived from head neural crest relationship: part_of UBERON:0006298 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0006298 ! submandibular gland primordium relationship: develops_from UBERON:0003324 ! mesenchyme of lower jaw [Term] id: UBERON:0009548 name: hepatic sinusoid of left of lobe of liver subset: emapa_ehdaa2 xref: EHDAA2:0001001 xref: EMAPA:18309 is_a: UBERON:0001281 ! implied link automatically realized ! hepatic sinusoid relationship: part_of UBERON:0001115 intersection_of: UBERON:0001281 ! hepatic sinusoid intersection_of: part_of UBERON:0001115 ! left lobe of liver [Term] id: UBERON:0009549 name: hepatic sinusoid of right of lobe of liver subset: emapa_ehdaa2 xref: EHDAA2:0001009 xref: EMAPA:18316 is_a: UBERON:0001281 ! implied link automatically realized ! hepatic sinusoid relationship: part_of UBERON:0001114 intersection_of: UBERON:0001281 ! hepatic sinusoid intersection_of: part_of UBERON:0001114 ! right lobe of liver [Term] id: UBERON:0009550 name: endoderm of foregut-midgut junction subset: emapa_ehdaa2 xref: EHDAA2:0000572 xref: EMAPA:18403 is_a: UBERON:0000925 ! implied link automatically realized ! endoderm is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: part_of UBERON:0006235 intersection_of: UBERON:0000925 ! endoderm intersection_of: part_of UBERON:0006235 ! foregut-midgut junction [Term] id: UBERON:0009551 name: distal segment of digit def: "A segment of a digit containing the distal phalanx, and overlapping the interphalangeal joint[CJM]. The digit tip is derived from multiple and distinct embryonic origins, and includes the distal bone with associated marrow cavity and haematopoietic cells, ventral (flexor) and dorsal (extensor) tendons, sweat glands with myoepithelial and luminal secreting cells and associated neurons for innervation, dermis with resident melanocytes and dendritic cells, mesenchyme with resident fibroblasts, skin epidermis with hair follicles, a nail organ composed of six specific parts (the root, nail bed, nail plate, eponychium (cuticle), perionychium and hyponychium)." [doi:10.1038/nature10346] comment: Newborn and adult mice are able to regrow forelimb (finger) and hindlimb (toe) digit tips after their amputation through the distal interphalangeal joint. Regeneration of the digit tip involves the integrated regrowth of multiple tissues within 2–3 months, reaching an external morphology that is cosmetically and functionally similar to normal digits. Most importantly, regeneration of the mouse distal digit shares morphological similarities with clinical cases documenting regrowth of missing distal portions of fingers in both children and adults synonym: "digit tip" EXACT [UBERON:cjm] synonym: "distal digit segment" EXACT [UBERON:cjm] synonym: "tip of digit" EXACT [UBERON:cjm] is_a: UBERON:0000914 ! organismal segment is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: overlaps UBERON:0006658 {source="cjm"} ! inter-phalangeal joint relationship: part_of UBERON:0002544 ! digit [Term] id: UBERON:0009552 name: distal segment of hand digit alt_id: UBERON:0004093 def: "." [HP:0001211] comment: in SNOMED this is a surface region. Here we intend it to be the entire distal segment synonym: "finger digit tip" EXACT [doi:10.1038/nature10346] synonym: "finger distal segment" EXACT [UBERON:cjm] synonym: "finger tip" EXACT [UBERON:cjm] synonym: "fingertip" EXACT [HP:0001211] synonym: "forelimb digit tip" EXACT [doi:10.1038/nature10346] synonym: "tip of finger" EXACT [SCTID:312543003] xref: OpenCyc:Mx4rvVjpf5wpEbGdrcN5Y29ycA xref: SCTID:312543003 is_a: UBERON:0009551 ! implied link automatically realized ! distal segment of digit relationship: part_of UBERON:0002389 intersection_of: UBERON:0009551 ! distal segment of digit intersection_of: part_of UBERON:0002389 ! hand digit [Term] id: UBERON:0009553 name: distal segment of foot digit synonym: "hindlimb digit tip" EXACT [doi:10.1038/nature10346] synonym: "tip of toe" EXACT [UBERON:cjm] synonym: "toe digit tip" EXACT [doi:10.1038/nature10346] synonym: "toe distal segment" EXACT [UBERON:cjm] is_a: UBERON:0009551 ! implied link automatically realized ! distal segment of digit relationship: part_of UBERON:0001466 intersection_of: UBERON:0009551 ! distal segment of digit intersection_of: part_of UBERON:0001466 ! foot digit [Term] id: UBERON:0009554 name: coffin bone def: "the bottommost bone in the equine leg and is encased by the hoof capsule. The distal phalanx articulates with both the middle phalanx and the distal sesamoid, forming the distal interphalangeal joint " [Wikipedia:Coffin_bone] synonym: "equine distal phalanx" EXACT [UBERON:cjm] synonym: "pedal bone" EXACT [Wikipedia:Coffin_bone, Wikipedia:Equine_forelimb_anatomy#Distal_phalanx] is_a: UBERON:0004300 ! distal phalanx [Term] id: UBERON:0009555 name: short pastern bone def: "." [Wikipedia:Equine_forelimb_anatomy#Middle_phalanx] synonym: "equine middle phalanx" EXACT [UBERON:cjm] is_a: UBERON:0004301 ! middle phalanx is_a: UBERON:0009558 ! pastern bone [Term] id: UBERON:0009556 name: long pastern bone def: "." [Wikipedia:Equine_forelimb_anatomy#Proximal_phalanx] synonym: "equine proximal phalanx" EXACT [UBERON:cjm] is_a: UBERON:0004302 ! proximal phalanx is_a: UBERON:0009558 ! pastern bone [Term] id: UBERON:0009557 name: coffin joint synonym: "equine distal interphalangeal joint" EXACT [UBERON:cjm] xref: SCTID:196392002 is_a: UBERON:0006658 ! inter-phalangeal joint [Term] id: UBERON:0009558 name: pastern bone is_a: UBERON:0003221 ! phalanx relationship: part_of UBERON:0009563 ! pastern region of limb [Term] id: UBERON:0009559 name: metacarpal/tarsal-phalangeal joint synonym: "fetlock" NARROW SENSU [UBERON:cjm, Wikipedia:Fetlock] synonym: "metacarpo-tarsophalangeal joint" EXACT [UBERON:cjm] is_a: UBERON:0002217 ! implied link automatically realized ! synovial joint is_a: UBERON:0003841 ! implied link automatically realized ! autopod joint relationship: attached_to UBERON:0003656 relationship: part_of UBERON:0002544 intersection_of: UBERON:0002217 ! synovial joint intersection_of: attached_to UBERON:0003656 ! mesopodium bone intersection_of: part_of UBERON:0002544 ! digit [Term] id: UBERON:0009563 name: pastern region of limb comment: note that digit is used very generically in uberon, to include the homologous region in ungulates xref: SCTID:370725009 is_a: UBERON:0000914 ! organismal segment is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0002544 ! digit [Term] id: UBERON:0009564 name: distal limb integumentary appendage def: "A nail, hoof or claw." [PMID:11710767] synonym: "unguis" RELATED [] xref: MESH:A.13.491 is_a: UBERON:0000026 ! appendage is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001003 ! epidermis relationship: part_of UBERON:0009551 {source="cjm"} ! distal segment of digit [Term] id: UBERON:0009565 name: nail of forelimb digit synonym: "finger nail" EXACT [FMA:54327] synonym: "fingernail" EXACT [FMA:54327] synonym: "nail of finger" EXACT [FMA:54327] xref: FMA:54327 xref: ncithesaurus:Fingernail is_a: UBERON:0001705 ! implied link automatically realized ! nail relationship: part_of UBERON:0002389 intersection_of: UBERON:0001705 ! nail intersection_of: part_of UBERON:0002389 ! hand digit relationship: part_of UBERON:0005276 {source="FMA"} ! dorsal skin of finger [Term] id: UBERON:0009566 name: intestinal submucosa synonym: "submucosa of intestine" EXACT [FMA:15696] xref: FMA:15696 is_a: UBERON:0000009 ! implied link automatically realized ! submucosa is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: part_of UBERON:0000160 intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0000160 ! intestine relationship: part_of UBERON:0001262 {source="FMA"} ! wall of intestine [Term] id: UBERON:0009567 name: nail of hindlimb digit synonym: "nail of toe" EXACT [FMA:54328] synonym: "toe nail" EXACT [FMA:54328] synonym: "toenail" EXACT [FMA:54328] xref: FMA:54328 xref: ncithesaurus:Toe_Nail is_a: UBERON:0001705 ! implied link automatically realized ! nail relationship: part_of UBERON:0001466 intersection_of: UBERON:0001705 ! nail intersection_of: part_of UBERON:0001466 ! foot digit relationship: part_of UBERON:0005277 {source="FMA"} ! dorsal skin of toe [Term] id: UBERON:0009568 name: trunk region of vertebral column def: "Region of the vertebral column that is part of the trunk." [UBERON:cjm] synonym: "presacral region" RELATED [AAO:0000612] synonym: "thoracolumbar region" RELATED [AAO:0000612] xref: AAO:0000612 xref: XAO:0003077 is_a: UBERON:0000075 ! implied link automatically realized ! subdivision of skeletal system relationship: part_of UBERON:0002100 intersection_of: UBERON:0000075 ! subdivision of skeletal system intersection_of: part_of UBERON:0002100 ! trunk [Term] id: UBERON:0009569 name: subdivision of trunk synonym: "region of trunk" EXACT [FMA:25054] synonym: "trunk subdivision" EXACT [FMA:25054] xref: FMA:25054 xref: SCTID:22943007 xref: XAO:0000054 is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0002100 ! trunk [Term] id: UBERON:0009570 name: spinal cord sulcus limitans xref: EMAPA:17584 is_a: UBERON:0005478 ! sulcus limitans of neural tube [Term] id: UBERON:0009571 name: ventral midline def: "In protostomes (such as insects, snails and worms) as well as deuterostomes (vertebrates), the midline is an embryonic region that functions in patterning of the adjacent nervous tissue. The ventral midline in insects is a cell population extending along the ventral surface of the embryo and is the region from which cells detach to form the ventrally located nerve cords. In vertebrates, the midline is originally located dorsally. During development, it folds inwards and becomes the ventral part of the dorsally located neural tube and is then called the ventral midline, or floor plate." [GOC:bf, GOC:go_curators, PMID:12075342] xref: FBbt:00000093 is_a: UBERON:0002050 {source="FMA"} ! embryonic structure [Term] id: UBERON:0009572 name: lumen of central canal of spinal cord def: "A cerebrospinal fluid-filled space that runs longitudinally through the length of the entire spinal cord. The central canal is contiguous with the ventricular system of the brain. The central canal represents the adult remainder of the neural tube." [Wikipedia:Central_canal] synonym: "cavity of central canal of spinal cord" EXACT [FMA:242845] synonym: "central canal lumen" EXACT [UBERON:cjm] xref: FMA:242845 is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0005281 {source="FMA-modified"} ! ventricular system of central nervous system relationship: surrounded_by UBERON:0002291 {source="FMA-modified"} ! central canal relationship: surrounds UBERON:0001359 ! cerebrospinal fluid [Term] id: UBERON:0009573 name: sulcus limitans of fourth ventricle def: "In the floor of the fourth ventricle, the sulcus limitans separates the cranial nerve motor nuclei (medial) from the sensory nuclei (lateral). In the superior part of the rhomboid fossa, it corresponds with the lateral limit of the fossa and presents a bluish-gray area, the locus ceruleus (which owes its color to an underlying patch of deeply pigmented nerve cells, termed the substantia ferruginea). It is seen as slight depressions separating the basal and alar plates[WP]" [Wikipedia:Sulcus_limitans] synonym: "sulcus limitans" RELATED [FMA:78496] xref: FMA:78496 xref: ncithesaurus:Sulcus_Limitans is_a: UBERON:0002553 ! anatomical cavity disjoint_from: UBERON:0005478 ! sulcus limitans of neural tube relationship: part_of UBERON:0002422 ! fourth ventricle [Term] id: UBERON:0009576 name: medulla oblongata sulcus limitans xref: EHDAA2:0001100 xref: EMAPA:17561 is_a: UBERON:0005478 ! sulcus limitans of neural tube [Term] id: UBERON:0009577 name: metencephalon sulcus limitans xref: EHDAA2:0001161 xref: EMAPA:17567 is_a: UBERON:0005478 ! sulcus limitans of neural tube [Term] id: UBERON:0009578 name: myelencephalon sulcus limitans xref: EHDAA2:0001945 is_a: UBERON:0005478 ! sulcus limitans of neural tube [Term] id: UBERON:0009579 name: myelencephalon basal plate comment: todo - check EHDAA2 post-CNS-revision xref: EHDAA2:0000646 xref: EMAPA:17088 xref: OG:0000322 is_a: UBERON:0004064 ! basal plate [Term] id: UBERON:0009580 name: diencephalon mantle layer synonym: "diencephalon lateral wall mantle layer" EXACT [] xref: EHDAA2:0000397 xref: EMAPA:16906 is_a: UBERON:0005883 ! neural tube lateral wall mantle layer relationship: part_of UBERON:0005591 {source="EMAPA"} ! diencephalon lateral wall [Term] id: UBERON:0009581 name: midbrain mantle layer synonym: "midbrain lateral wall mantle layer" EXACT [] xref: EHDAA2:0001172 xref: EMAPA:16977 is_a: UBERON:0005883 ! neural tube lateral wall mantle layer relationship: part_of UBERON:0005495 {source="EMAPA"} ! midbrain lateral wall [Term] id: UBERON:0009582 name: spinal cord lateral wall synonym: "lateral wall spinal cord" EXACT [ZFA:0000996] xref: EMAPA:17579 xref: ZFA:0000996 is_a: UBERON:0005496 ! neural tube lateral wall relationship: part_of UBERON:0002240 {source="EMAPA"} ! spinal cord [Term] id: UBERON:0009583 name: spinal cord mantle layer synonym: "spinal cord lateral wall mantle layer" EXACT [] xref: EMAPA:17580 is_a: UBERON:0005883 ! neural tube lateral wall mantle layer relationship: part_of UBERON:0009582 {source="EMAPA"} ! spinal cord lateral wall [Term] id: UBERON:0009584 name: mesenchyme of mandibular component xref: EMAPA:16385 is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue relationship: part_of UBERON:0007237 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0007237 ! 1st arch mandibular component relationship: part_of UBERON:0007237 {source="EMAPA"} ! 1st arch mandibular component [Term] id: UBERON:0009585 name: interdigital region mesenchyme is_a: UBERON:0009749 ! implied link automatically realized ! limb mesenchyme relationship: part_of UBERON:0006012 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0006012 ! interdigital region [Term] id: UBERON:0009586 name: mesenchyme of interdigital region between digits 1 and 2 of forelimb synonym: "interdigital region between fingers 1 and 2 mesenchyme" EXACT [EHDAA2:0000846] xref: EHDAA2:0000846 xref: EMAPA:17447 is_a: UBERON:0009596 ! implied link automatically realized ! mesenchyme of interdigital region between digits 1 and 2 is_a: UBERON:0009600 ! implied link automatically realized ! mesenchyme of interdigital region of forelimb relationship: part_of UBERON:0006026 intersection_of: UBERON:0009585 ! interdigital region mesenchyme intersection_of: part_of UBERON:0006026 ! interdigital region between fingers 1 and 2 relationship: part_of UBERON:0006026 {source="EMAPA"} ! interdigital region between fingers 1 and 2 [Term] id: UBERON:0009587 name: mesenchyme of interdigital region between digits 2 and 3 of forelimb synonym: "interdigital region between fingers 2 and 3 mesenchyme" EXACT [EHDAA2:0000849] xref: EHDAA2:0000849 xref: EMAPA:17450 is_a: UBERON:0009597 ! implied link automatically realized ! mesenchyme of interdigital region between digits 2 and 3 is_a: UBERON:0009600 ! implied link automatically realized ! mesenchyme of interdigital region of forelimb relationship: part_of UBERON:0006029 intersection_of: UBERON:0009585 ! interdigital region mesenchyme intersection_of: part_of UBERON:0006029 ! interdigital region between fingers 2 and 3 relationship: part_of UBERON:0006029 {source="EMAPA"} ! interdigital region between fingers 2 and 3 [Term] id: UBERON:0009588 name: mesenchyme of interdigital region between digits 3 and 4 of forelimb synonym: "interdigital region between fingers 3 and 4 mesenchyme" EXACT [EHDAA2:0000852] xref: EHDAA2:0000852 xref: EMAPA:17453 is_a: UBERON:0009598 ! implied link automatically realized ! mesenchyme of interdigital region between digits 3 and 4 is_a: UBERON:0009600 ! implied link automatically realized ! mesenchyme of interdigital region of forelimb relationship: part_of UBERON:0006032 intersection_of: UBERON:0009585 ! interdigital region mesenchyme intersection_of: part_of UBERON:0006032 ! interdigital region between fingers 3 and 4 relationship: part_of UBERON:0006032 {source="EMAPA"} ! interdigital region between fingers 3 and 4 [Term] id: UBERON:0009589 name: mesenchyme of interdigital region between digits 4 and 5 of forelimb synonym: "interdigital region between fingers 4 and 5 mesenchyme" EXACT [EHDAA2:0000855] xref: EHDAA2:0000855 xref: EMAPA:17456 is_a: UBERON:0009599 ! implied link automatically realized ! mesenchyme of interdigital region between digits 4 and 5 is_a: UBERON:0009600 ! implied link automatically realized ! mesenchyme of interdigital region of forelimb relationship: part_of UBERON:0006035 intersection_of: UBERON:0009585 ! interdigital region mesenchyme intersection_of: part_of UBERON:0006035 ! interdigital region between fingers 4 and 5 relationship: part_of UBERON:0006035 {source="EMAPA"} ! interdigital region between fingers 4 and 5 [Term] id: UBERON:0009590 name: mesenchyme of interdigital region between digits 1 and 2 of hindlimb synonym: "interdigital region between toes 1 and 2 mesenchyme" EXACT [EHDAA2:0000858] xref: EHDAA2:0000858 xref: EMAPA:17478 is_a: UBERON:0009596 ! implied link automatically realized ! mesenchyme of interdigital region between digits 1 and 2 is_a: UBERON:0009601 ! implied link automatically realized ! mesenchyme of interdigital region of hindlimb relationship: part_of UBERON:0006038 intersection_of: UBERON:0009585 ! interdigital region mesenchyme intersection_of: part_of UBERON:0006038 ! interdigital region between toes 1 and 2 relationship: part_of UBERON:0006038 {source="EMAPA"} ! interdigital region between toes 1 and 2 [Term] id: UBERON:0009591 name: mesenchyme of interdigital region between digits 2 and 3 of hindlimb synonym: "interdigital region between toes 2 and 3 mesenchyme" EXACT [EHDAA2:0000861] xref: EHDAA2:0000861 xref: EMAPA:17481 is_a: UBERON:0009597 ! implied link automatically realized ! mesenchyme of interdigital region between digits 2 and 3 is_a: UBERON:0009601 ! implied link automatically realized ! mesenchyme of interdigital region of hindlimb relationship: part_of UBERON:0006041 intersection_of: UBERON:0009585 ! interdigital region mesenchyme intersection_of: part_of UBERON:0006041 ! interdigital region between toes 2 and 3 relationship: part_of UBERON:0006041 {source="EMAPA"} ! interdigital region between toes 2 and 3 [Term] id: UBERON:0009592 name: mesenchyme of interdigital region between digits 3 and 4 of hindlimb synonym: "interdigital region between toes 3 and 4 mesenchyme" EXACT [EHDAA2:0000864] xref: EHDAA2:0000864 xref: EMAPA:17484 is_a: UBERON:0009598 ! implied link automatically realized ! mesenchyme of interdigital region between digits 3 and 4 is_a: UBERON:0009601 ! implied link automatically realized ! mesenchyme of interdigital region of hindlimb relationship: part_of UBERON:0006044 intersection_of: UBERON:0009585 ! interdigital region mesenchyme intersection_of: part_of UBERON:0006044 ! interdigital region between toes 3 and 4 relationship: part_of UBERON:0006044 {source="EMAPA"} ! interdigital region between toes 3 and 4 [Term] id: UBERON:0009593 name: mesenchyme of interdigital region between digits 4 and 5 of hindlimb synonym: "interdigital region between toes 4 and 5 mesenchyme" EXACT [EHDAA2:0000867] xref: EHDAA2:0000867 xref: EMAPA:17487 is_a: UBERON:0009599 ! implied link automatically realized ! mesenchyme of interdigital region between digits 4 and 5 is_a: UBERON:0009601 ! implied link automatically realized ! mesenchyme of interdigital region of hindlimb relationship: part_of UBERON:0006047 intersection_of: UBERON:0009585 ! interdigital region mesenchyme intersection_of: part_of UBERON:0006047 ! interdigital region between toes 4 and 5 relationship: part_of UBERON:0006047 {source="EMAPA"} ! interdigital region between toes 4 and 5 [Term] id: UBERON:0009596 name: mesenchyme of interdigital region between digits 1 and 2 is_a: UBERON:0009585 ! implied link automatically realized ! interdigital region mesenchyme relationship: part_of UBERON:0006016 intersection_of: UBERON:0009585 ! interdigital region mesenchyme intersection_of: part_of UBERON:0006016 ! interdigital region between digits 1 and 2 [Term] id: UBERON:0009597 name: mesenchyme of interdigital region between digits 2 and 3 is_a: UBERON:0009585 ! implied link automatically realized ! interdigital region mesenchyme relationship: part_of UBERON:0006019 intersection_of: UBERON:0009585 ! interdigital region mesenchyme intersection_of: part_of UBERON:0006019 ! interdigital region between digits 2 and 3 [Term] id: UBERON:0009598 name: mesenchyme of interdigital region between digits 3 and 4 is_a: UBERON:0009585 ! implied link automatically realized ! interdigital region mesenchyme relationship: part_of UBERON:0006022 intersection_of: UBERON:0009585 ! interdigital region mesenchyme intersection_of: part_of UBERON:0006022 ! interdigital region between digits 3 and 4 [Term] id: UBERON:0009599 name: mesenchyme of interdigital region between digits 4 and 5 is_a: UBERON:0009585 ! implied link automatically realized ! interdigital region mesenchyme relationship: part_of UBERON:0006025 intersection_of: UBERON:0009585 ! interdigital region mesenchyme intersection_of: part_of UBERON:0006025 ! interdigital region between digits 4 and 5 [Term] id: UBERON:0009600 name: mesenchyme of interdigital region of forelimb is_a: UBERON:0003859 ! implied link automatically realized ! forelimb mesenchyme is_a: UBERON:0009585 ! implied link automatically realized ! interdigital region mesenchyme relationship: part_of UBERON:0002398 intersection_of: UBERON:0009585 ! interdigital region mesenchyme intersection_of: part_of UBERON:0002398 ! hand [Term] id: UBERON:0009601 name: mesenchyme of interdigital region of hindlimb is_a: UBERON:0003860 ! implied link automatically realized ! hindlimb mesenchyme is_a: UBERON:0009585 ! implied link automatically realized ! interdigital region mesenchyme relationship: part_of UBERON:0002387 intersection_of: UBERON:0009585 ! interdigital region mesenchyme intersection_of: part_of UBERON:0002387 ! foot [Term] id: UBERON:0009602 name: left lung associated mesenchyme xref: EHDAA2:0000944 xref: EMAPA:16730 xref: EMAPA:17654 is_a: UBERON:0004883 ! implied link automatically realized ! lung mesenchyme relationship: part_of UBERON:0002168 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0002168 ! left lung [Term] id: UBERON:0009603 name: right lung associated mesenchyme xref: EHDAA2:0001739 xref: EMAPA:17662 is_a: UBERON:0004883 ! implied link automatically realized ! lung mesenchyme relationship: part_of UBERON:0002167 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0002167 ! right lung [Term] id: UBERON:0009610 name: forebrain neural plate xref: TAO:0007018 xref: ZFA:0007018 is_a: UBERON:0003075 ! implied link automatically realized ! neural plate relationship: develops_from UBERON:0006240 intersection_of: UBERON:0003075 ! neural plate intersection_of: develops_from UBERON:0006240 {source="ZFA"} ! future forebrain relationship: part_of UBERON:0003056 {source="ZFA"} ! pre-chordal neural plate [Term] id: UBERON:0009611 name: midbrain neural plate xref: TAO:0007019 xref: ZFA:0007019 xref: ZFIN:ZDB-ANAT-070928-200 is_a: UBERON:0003075 ! implied link automatically realized ! neural plate relationship: develops_from UBERON:0009616 intersection_of: UBERON:0003075 ! neural plate intersection_of: develops_from UBERON:0009616 {source="ZFA"} ! presumptive midbrain relationship: part_of UBERON:0003056 {source="ZFA"} ! pre-chordal neural plate [Term] id: UBERON:0009612 name: forebrain midbrain boundary neural plate xref: TAO:0007020 xref: ZFA:0007020 xref: ZFIN:ZDB-ANAT-070928-201 is_a: UBERON:0006800 {source="ZFA"} ! anatomical line relationship: develops_from UBERON:0007288 {source="ZFA"} ! presumptive forebrain midbrain boundary relationship: part_of UBERON:0003056 {source="ZFA"} ! pre-chordal neural plate [Term] id: UBERON:0009614 name: hindbrain neural plate xref: TAO:0007022 xref: ZFA:0007022 xref: ZFIN:ZDB-ANAT-070928-203 is_a: UBERON:0003075 ! implied link automatically realized ! neural plate relationship: develops_from UBERON:0007277 intersection_of: UBERON:0003075 ! neural plate intersection_of: develops_from UBERON:0007277 {source="ZFA"} ! presumptive hindbrain relationship: part_of UBERON:0003057 {source="ZFA"} ! chordal neural plate [Term] id: UBERON:0009615 name: midbrain hindbrain boundary neural plate comment: todo: developmental relationships for lines synonym: "MHB neural plate" EXACT [UBERON:cjm] synonym: "midbrain-hindbrain boundary neural plate" EXACT [ZFA:0007044] xref: TAO:0007044 xref: ZFA:0007044 xref: ZFIN:ZDB-ANAT-070928-225 is_a: UBERON:0007281 ! implied link automatically realized ! presumptive midbrain hindbrain boundary relationship: part_of UBERON:0003075 intersection_of: UBERON:0009774 ! embryonic midbrain hindbrain boundary intersection_of: part_of UBERON:0003075 ! neural plate relationship: develops_from UBERON:0007281 {source="ZFA"} ! presumptive midbrain hindbrain boundary relationship: part_of UBERON:0003075 {source="ZFA"} ! neural plate [Term] id: UBERON:0009616 name: presumptive midbrain synonym: "presumptive mesencephalon" EXACT [ZFA:0000148] xref: ZFA:0000148 is_a: UBERON:0006598 ! implied link automatically realized ! presumptive structure relationship: develops_into UBERON:0001891 intersection_of: UBERON:0006598 ! presumptive structure intersection_of: develops_into UBERON:0001891 ! midbrain relationship: develops_from UBERON:0007284 {source="ZFA-modified"} ! presumptive neural plate relationship: part_of UBERON:0006238 {source="ZFA"} ! future brain [Term] id: UBERON:0009617 name: head paraxial mesenchyme def: "Bilateral mesenchymal mesoderm parallel and immediately adjacent to the neural tube/notochord; it generates a subset of extra-ocular, and other head, muscles." [PMID:21610022] synonym: "cephalic paraxial mesenchyme" EXACT [UBERON:cjm] synonym: "cephalic paraxial mesoderm" EXACT [UBERON:cjm] xref: EHDAA:364 xref: EHDAA2:0000736 xref: EMAPA:16171 is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0005256 ! implied link automatically realized ! trunk mesenchyme is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue relationship: develops_from UBERON:0000926 {source="EHDAA2"} ! mesoderm relationship: part_of UBERON:0003077 ! paraxial mesoderm relationship: part_of UBERON:0005253 {source="EHDAA2"} ! head mesenchyme [Term] id: UBERON:0009618 name: trunk paraxial mesenchyme synonym: "trunk paraxial mesoderm" RELATED [] xref: EHDAA2:0002094 is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0005256 ! implied link automatically realized ! trunk mesenchyme is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue relationship: develops_from UBERON:0000926 {source="EHDAA2"} ! mesoderm relationship: part_of UBERON:0003077 ! paraxial mesoderm relationship: part_of UBERON:0005256 {source="EHDAA2"} ! trunk mesenchyme [Term] id: UBERON:0009620 name: tail bud paraxial mesoderm xref: EHDAA2:0003239 is_a: UBERON:0003077 ! paraxial mesoderm relationship: develops_from UBERON:0009618 {source="EHDAA2"} ! trunk paraxial mesenchyme relationship: part_of UBERON:0002533 {source="EHDAA2"} ! tail bud [Term] id: UBERON:0009621 name: tail somite xref: AAO:0010383 xref: EMAPA:16860 xref: XAO:0003143 is_a: UBERON:0002329 ! implied link automatically realized ! somite relationship: part_of UBERON:0002415 intersection_of: UBERON:0002329 ! somite intersection_of: part_of UBERON:0002415 ! tail [Term] id: UBERON:0009622 name: pronephric proximal straight tubule def: "A proximal straight tubule that is part of a pronephros." [ZFIN:ZDB-PUB-071029-9] xref: TAO:0002239 xref: ZFA:0001621 is_a: UBERON:0001290 ! implied link automatically realized ! proximal straight tubule relationship: part_of UBERON:0002120 intersection_of: UBERON:0001290 ! proximal straight tubule intersection_of: part_of UBERON:0002120 ! pronephros [Term] id: UBERON:0009623 name: spinal nerve root def: "The paired bundles of nerve fibers entering and leaving the spinal cord at each segment. The dorsal and ventral nerve roots join to form the mixed segmental spinal nerves. The dorsal roots are generally afferent, formed by the central projections of the spinal (dorsal root) ganglia sensory cells, and the ventral roots efferent, comprising the axons of spinal motor and autonomic preganglionic neurons. There are, however, some exceptions to this afferent/efferent rule." [MESH:A.08.800.800.720.725] comment: ZFA has part_of to spinal cord but this causes spatial disjointness violations (CNS/PNS) synonym: "root of spinal nerve" EXACT [FMA:14060] synonym: "spinal neural root" EXACT [FMA:14060] xref: FMA:14060 xref: GAID:717 xref: MESH:A.08.800.800.720.725 xref: ncithesaurus:Spinal_Nerve_Root xref: SCTID:362436008 xref: ZFA:0005578 is_a: UBERON:0002211 {source="FMA"} ! nerve root is_a: UBERON:0004732 ! implied link automatically realized ! segmental subdivision of nervous system relationship: part_of UBERON:0001780 intersection_of: UBERON:0002211 ! nerve root intersection_of: part_of UBERON:0001780 ! spinal nerve relationship: part_of UBERON:0001780 {source="FMA"} ! spinal nerve [Term] id: UBERON:0009624 name: lumbar nerve def: "The lumbar nerves are the five spinal nerves emerging from the lumbar vertebrae. They are divided into posterior and anterior divisions." [Wikipedia:Lumbar_nerves] synonym: "lumbar spinal nerve" EXACT [FMA:5861] xref: FMA:5861 xref: ncithesaurus:Lumbar_Nerve is_a: UBERON:0001780 {source="FMA"} ! spinal nerve [Term] id: UBERON:0009625 name: sacral nerve def: "The five sacral nerves emerge from the sacrum. Although the vertebral components of the sacrum are fused into a single bone, the sacral vertebrae are still used to number the sacral nerves. Posteriorly, they emerge from the posterior sacral foramina, and form the posterior branches of sacral nerves. Anteriorly, they emerge from the anterior sacral foramina, and contribute to the sacral plexus (S1-S4) and coccygeal plexus." [Wikipedia:Sacral_nerves] synonym: "sacral spinal nerve" EXACT [FMA:5862] xref: FMA:5862 xref: ncithesaurus:Sacral_Nerve is_a: UBERON:0001780 {source="FMA"} ! spinal nerve [Term] id: UBERON:0009629 name: coccygeal nerve def: "The coccygeal nerve is the spinal nerve that corresponds to the coccyx bone." [Wikipedia:Coccygeal_nerve] synonym: "coccygeal spinal nerve" EXACT [FMA:5863] xref: FMA:5863 xref: ncithesaurus:Coccygeal_Nerve is_a: UBERON:0001780 {source="FMA"} ! spinal nerve [Term] id: UBERON:0009630 name: root of thoracic nerve synonym: "nerve root part of thoracic spinal cord" EXACT [NIF:NIF] synonym: "thoracic nerve root" EXACT [FMA:14064] synonym: "thoracic neural root" EXACT [FMA:14064] xref: FMA:14064 xref: NIF_GrossAnatomy:birnlex_836 is_a: UBERON:0009623 ! implied link automatically realized ! spinal nerve root relationship: part_of UBERON:0003726 intersection_of: UBERON:0009623 ! spinal nerve root intersection_of: part_of UBERON:0003726 ! thoracic nerve [Term] id: UBERON:0009631 name: root of lumbar spinal nerve synonym: "lumbar spinal nerve root" EXACT [FMA:16421] synonym: "lumbar spinal neural root" EXACT [FMA:16421] synonym: "nerve root part of lumbar spinal cord" EXACT [NIF:NIF] xref: FMA:16421 xref: ncithesaurus:Lumbar_Spinal_Nerve_Root xref: NIF_GrossAnatomy:birnlex_1613 is_a: UBERON:0009623 ! implied link automatically realized ! spinal nerve root relationship: part_of UBERON:0009624 intersection_of: UBERON:0009623 ! spinal nerve root intersection_of: part_of UBERON:0009624 ! lumbar nerve [Term] id: UBERON:0009632 name: root of cervical nerve synonym: "cervical neural root" EXACT [FMA:16422] synonym: "cervical spinal root" EXACT [FMA:16422] synonym: "nerve root part of cervical spinal cord" EXACT [NIF:NIF] synonym: "root of cervical spinal nerve" EXACT [FMA:16422] xref: FMA:16422 xref: ncithesaurus:Cervical_Spinal_Nerve_Root xref: NIF_GrossAnatomy:birnlex_955 is_a: UBERON:0009623 ! spinal nerve root relationship: part_of UBERON:0000962 ! cervical nerve [Term] id: UBERON:0009633 name: root of sacral nerve synonym: "nerve root part of sacral spinal cord" EXACT [NIF:NIF] synonym: "root of sacral spinal nerve" EXACT [FMA:18028] synonym: "sacral neural root" EXACT [FMA:18028] xref: FMA:18028 xref: ncithesaurus:Sacral_Spinal_Nerve_Root xref: NIF_GrossAnatomy:birnlex_1518 is_a: UBERON:0009623 ! implied link automatically realized ! spinal nerve root relationship: part_of UBERON:0009625 intersection_of: UBERON:0009623 ! spinal nerve root intersection_of: part_of UBERON:0009625 ! sacral nerve [Term] id: UBERON:0009634 name: root of coccygeal nerve synonym: "coccygeal neural root" EXACT [FMA:18131] synonym: "coccygeal spinal nerve root" EXACT [FMA:18131] synonym: "root of coccygeal spinal nerve" EXACT [FMA:18131] xref: FMA:18131 is_a: UBERON:0009623 ! implied link automatically realized ! spinal nerve root relationship: part_of UBERON:0009629 intersection_of: UBERON:0009623 ! spinal nerve root intersection_of: part_of UBERON:0009629 ! coccygeal nerve [Term] id: UBERON:0009635 name: parachordal cartilage def: "Chondrocranium chondrification center that fuses with cartilages derived from sclerotome region of occipital somites forming occipital bone, hypoglossal canals and foramen magnum." [ISBN10:1588903958, UBERON:cjm] synonym: "parachordal cartilages" EXACT PLURAL [ZFA:0001423] xref: ncithesaurus:Parachordal_Cartilage xref: TAO:0001423 xref: ZFA:0001423 is_a: UBERON:0003932 {source="ZFA"} ! chondrocranium cartilage relationship: overlaps UBERON:0003110 {source="ZFA"} ! otic region relationship: overlaps UBERON:0005902 {source="ZFA"} ! occipital region [Term] id: UBERON:0009636 name: prechordal cartilage def: "Chondrocranium chondrification center that that forms anterior body of sphenoid, containing the sella turcica and posterior body of sphenoid." [ISBN10:1588903958, UBERON:cjm] is_a: UBERON:0003932 {source="ZFA"} ! chondrocranium cartilage [Term] id: UBERON:0009637 name: alisphenoid center is_a: UBERON:0004765 ! skeletal element [Term] id: UBERON:0009638 name: orbitosphenoid center comment: merge with sphenoid lesser wing cartilage condensation? is_a: UBERON:0004765 ! skeletal element [Term] id: UBERON:0009639 name: body of sphenoid def: "The body of the sphenoid bone, more or less cubical in shape, is hollowed out in its interior to form two large cavities, the sphenoidal air sinuses, which are separated from each other by a septum." [Wikipedia:Body_of_sphenoid_bone] synonym: "body of sphenoidal bone" EXACT [FMA:52867] synonym: "central body of sphenoid" EXACT [FMA:52867] synonym: "corpus (os sphenoidale)" EXACT [FMA:52867] synonym: "sphenoid body" EXACT [FMA:52867] xref: FMA:52867 is_a: UBERON:0001474 ! bone is_a: UBERON:0003465 ! implied link automatically realized ! chondrocranium bone relationship: develops_from UBERON:0009636 {source="ISBN10:1588903958"} ! prechordal cartilage relationship: develops_from UBERON:0009640 {source="ISBN10:1588903958"} ! hypophyseal cartilage relationship: part_of UBERON:0001677 {source="FMA"} ! sphenoid bone relationship: part_of UBERON:0002517 {source="FMA"} ! basicranium [Term] id: UBERON:0009640 name: hypophyseal cartilage def: "forms around the developing pituitary, and together with prechordal cartilages creates body of sphenoid bone" [ISBN10:1588903958] is_a: UBERON:0007844 ! cartilaginous element [Term] id: UBERON:0009641 name: ansa lenticularis def: "The ansa lenticularis (ansa lentiformis in older texts) is a part of the brain, making up the superior layer of the substantia innominata of Meynert. Its fibers, derived from the medullary lamina of the lentiform nucleus, pass medially to end in the thalamus and subthalamic region, while others are said to end in the tegmentum and red nucleus. It is classified by NeuroNames as part of the subthalamus." [Wikipedia:Ansa_lenticularis] synonym: "ansa lenticularis in thalamo" EXACT [FMA:TA] synonym: "ansa lenticularis in thalamus" EXACT [FMA:62070] synonym: "ventral peduncle of lateral forebrain bundle" EXACT [FMA:62070] xref: FMA:62070 xref: NIF_GrossAnatomy:nlx_anat_1010011 is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus is_a: UBERON:0002791 {source="NIF_GrossAnatomy"} ! regional part of telencephalon relationship: part_of UBERON:0001900 {source="FMA"} ! subthalamus [Term] id: UBERON:0009642 name: mammillothalamic tract def: "The mammillothalamic fasciculus (mammillothalamic tract, thalamomammillary fasciculus, bundle of Vicq dbAzyr) arises from cells in both the medial and lateral nuclei of the mammillary body and by fibers that are directly continued from the fornix. The Mammillothalamic fasciculus then connects the mammillary body to the dorsal tegmental nuclei, the ventral tegmental nuclei, and the anterior thalamic nucleus" [Wikipedia:Mammillothalamic_fasciculus] synonym: "bundle of vicq d%27azyr" RELATED [Wikipedia:Mammillothalamic_fasciculus] synonym: "bundle of vicq d%e2%80%99azyr" RELATED [Wikipedia:Mammillothalamic_fasciculus] synonym: "fasciculus mammillothalamicus" EXACT [FMA:TA] synonym: "mamillo-thalamic tract" RELATED [Wikipedia:Mammillothalamic_fasciculus] synonym: "mammillo-thalamic fasciculus" RELATED [Wikipedia:Mammillothalamic_fasciculus] synonym: "mammillothalamic fasciculus" EXACT [FMA:83849] synonym: "mammillothalamic tract" RELATED [Wikipedia:Mammillothalamic_fasciculus] synonym: "thalamomammillary fasciculus" RELATED [Wikipedia:Mammillothalamic_fasciculus] synonym: "vicq d'azyr's bundle" EXACT [FMA:83849] xref: FMA:83849 xref: NIF_GrossAnatomy:nlx_anat_1010016 is_a: UBERON:0007702 {source="FMA"} ! tract of brain [Term] id: UBERON:0009643 name: central tegmental tract def: "The central tegmental tract is a structure in the midbrain and pons. The central tegmental tract includes ascending axonal fibers which arise from the rostral nucleus solitarius and terminate in the ventral posteromedial nucleus (VPM) of thalamus. Information from the thalamus will go to cortical taste area, namely the insula and frontal operculum. It also contains descending axonal fibers from the parvocellular red nucleus. The descending axons will project to the inferior olivary nucleus. This latter pathway will be used to connect the contralateral cerebellum." [Wikipedia:Central_tegmental_tract] xref: FMA:83850 xref: NIF_GrossAnatomy:nlx_anat_1010012 is_a: UBERON:0007702 {source="FMA"} ! tract of brain [Term] id: UBERON:0009644 name: trachea non-cartilage connective tissue xref: MA:0001859 is_a: UBERON:0003571 {source="MA"} ! trachea connective tissue [Term] id: UBERON:0009645 name: ampullary gland xref: MA:0000400 xref: ncithesaurus:Ampullary_Gland is_a: UBERON:0005399 {source="MA"} ! male reproductive gland [Term] id: UBERON:0009646 name: lumbar sympathetic nerve trunk xref: MA:0001163 xref: ncithesaurus:Lumbar_Sympathetic_Nerve_Trunk is_a: UBERON:0004295 ! implied link automatically realized ! sympathetic nerve trunk relationship: part_of UBERON:0005462 intersection_of: UBERON:0004295 ! sympathetic nerve trunk intersection_of: part_of UBERON:0005462 ! lower back [Term] id: UBERON:0009647 name: tympanic epithelium xref: MA:0001224 xref: ncithesaurus:Tympanic_Epithelium is_a: UBERON:0000483 ! implied link automatically realized ! epithelium relationship: part_of UBERON:0002364 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002364 ! tympanic membrane relationship: part_of UBERON:0002364 {source="MA"} ! tympanic membrane [Term] id: UBERON:0009648 name: eyelid subcutaneous connective tissue xref: MA:0001252 xref: ncithesaurus:Eyelid_Subcutaneous_Connective_Tissue is_a: UBERON:0003581 {source="MA"} ! eyelid connective tissue [Term] id: UBERON:0009650 name: cortical arch of kidney synonym: "cortical arch" EXACT [MA:0001650] xref: MA:0001650 xref: ncithesaurus:Cortical_Arch is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0002189 {source="MA"} ! outer cortex of kidney [Term] id: UBERON:0009651 name: nephron tubule basement membrane synonym: "renal tubule basement membrane" EXACT [MA:0001680] xref: MA:0001680 xref: ncithesaurus:Renal_Tubule_Basement_Membrane is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0005769 ! implied link automatically realized ! basement membrane is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0001231 intersection_of: UBERON:0005769 ! basement membrane intersection_of: part_of UBERON:0001231 ! nephron tubule relationship: part_of UBERON:0001231 {source="MA"} ! nephron tubule [Term] id: UBERON:0009652 name: bronchus basement membrane xref: MA:0001832 xref: ncithesaurus:Bronchus_Basement_Membrane is_a: UBERON:0003592 {source="MA"} ! bronchus connective tissue is_a: UBERON:0005769 ! implied link automatically realized ! basement membrane relationship: part_of UBERON:0002185 intersection_of: UBERON:0005769 ! basement membrane intersection_of: part_of UBERON:0002185 ! bronchus [Term] id: UBERON:0009653 name: trachea basement membrane xref: MA:0001854 xref: ncithesaurus:Trachea_Basement_Membrane is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005769 ! implied link automatically realized ! basement membrane relationship: part_of UBERON:0003126 intersection_of: UBERON:0005769 ! basement membrane intersection_of: part_of UBERON:0003126 ! trachea relationship: part_of UBERON:0009644 {source="MA-modified"} ! trachea non-cartilage connective tissue [Term] id: UBERON:0009654 name: alveolar artery comment: add child terms xref: MA:0001913 xref: ncithesaurus:Alveolar_Artery is_a: UBERON:0001637 {source="MA"} ! artery [Term] id: UBERON:0009655 name: auricular artery comment: add child terms xref: MA:0001918 xref: ncithesaurus:Auricular_Artery is_a: UBERON:0001637 {source="MA"} ! artery [Term] id: UBERON:0009656 name: frontal artery comment: insufficiently defined xref: MA:0001960 is_obsolete: true [Term] id: UBERON:0009657 name: labial artery comment: add child terms xref: MA:0001987 xref: ncithesaurus:Labial_Artery is_a: UBERON:0001637 {source="MA"} ! artery [Term] id: UBERON:0009658 name: pancreatico-duodenal artery def: "." [Wikipedia:Pancreaticoduodenal_artery] comment: add child terms xref: MA:0002013 xref: ncithesaurus:Pancreatico-Duodenal_Artery is_a: UBERON:0001637 {source="MA"} ! artery [Term] id: UBERON:0009659 name: spermatic artery comment: add child terms xref: MA:0002040 xref: ncithesaurus:Spermatic_Artery is_a: UBERON:0001637 {source="MA"} ! artery [Term] id: UBERON:0009660 name: adrenal vein xref: MA:0002081 xref: ncithesaurus:Adrenal_Vein is_a: UBERON:0001638 {source="MA"} ! vein [Term] id: UBERON:0009661 name: midbrain nucleus def: "Nucleus located in the midbrain." [ZFIN:curator] xref: SCTID:279285003 xref: TAO:0002209 xref: ZFA:0001665 is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain is_a: UBERON:0006331 ! implied link automatically realized ! brainstem nucleus relationship: part_of UBERON:0001891 intersection_of: UBERON:0002308 ! nucleus of brain intersection_of: part_of UBERON:0001891 ! midbrain [Term] id: UBERON:0009662 name: hindbrain nucleus def: "Nucleus located within the hindbrain." [ZFIN:curator] xref: TAO:0002177 xref: ZFA:0001658 is_a: UBERON:0002308 ! implied link automatically realized ! nucleus of brain relationship: part_of UBERON:0002028 intersection_of: UBERON:0002308 ! nucleus of brain intersection_of: part_of UBERON:0002028 ! hindbrain [Term] id: UBERON:0009663 name: telencephalic nucleus xref: TAO:0002178 xref: ZFA:0001660 is_a: UBERON:0002308 ! implied link automatically realized ! nucleus of brain is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon relationship: part_of UBERON:0001893 intersection_of: UBERON:0002308 ! nucleus of brain intersection_of: part_of UBERON:0001893 ! telencephalon [Term] id: UBERON:0009664 name: gut mesentery xref: EHDAA2:0004566 is_a: UBERON:0000477 {source="EHDAA2"} ! anatomical cluster is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001179 {source="EHDAA2"} ! peritoneal cavity [Term] id: UBERON:0009668 name: ventral mesentery xref: EHDAA2:0004569 xref: SCTID:361430000 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0009664 {source="EHDAA2"} ! gut mesentery [Term] id: UBERON:0009669 name: embryonic cloacal lumen xref: EHDAA2:0004586 is_a: UBERON:0000464 {source="EHDAA2"} ! anatomical space relationship: surrounded_by UBERON:0000163 intersection_of: UBERON:0000464 ! anatomical space intersection_of: surrounded_by UBERON:0000163 ! embryonic cloaca relationship: surrounded_by UBERON:0000163 {source="EHDAA2"} ! embryonic cloaca [Term] id: UBERON:0009670 name: rectal lumen synonym: "lumen of rectum" EXACT [FMA:14598] xref: EHDAA2:0004587 xref: FMA:14598 is_a: UBERON:0000464 {source="EHDAA2"} ! anatomical space relationship: surrounded_by UBERON:0001052 intersection_of: UBERON:0000464 ! anatomical space intersection_of: surrounded_by UBERON:0001052 ! rectum relationship: develops_in UBERON:0009669 {source="EHDAA2"} ! embryonic cloacal lumen relationship: surrounded_by UBERON:0001052 {source="EHDAA2"} ! rectum [Term] id: UBERON:0009671 name: nasal fin def: "The nasal fin is an epithelial seam that develops by fusion between the epithelial linings of the medial and lateral nasal swellings. Shortly after its formation the nasal fin regresses and is replaced by mesenchyme, with exception of its most posterior portion which remains as the bucconasal membrane." [DOI:10.1002/aja.1001500308] xref: EHDAA2:0004548 is_a: UBERON:0000481 {source="EHDAA2"} ! multi-tissue structure is_a: UBERON:0004906 ! implied link automatically realized ! ectodermal gut relationship: part_of UBERON:0002424 {source="EHDAA2"} ! oral epithelium relationship: part_of UBERON:0005384 {source="EHDAA2"} ! nasal cavity epithelium [Term] id: UBERON:0009672 name: oronasal membrane def: "The oronasal membrane separates the oral cavity and nasal cavity. In humans, the oronasal membrane ruptures during the seventh week, producing a single, large oronasal cavity" [http://cwx.prenhall.com/bookbind/pubbooks/martini10/chapter24/custom3/deluxe-content.html] comment: split into two? synonym: "bucconasal membrane" EXACT [EHDAA:7840] xref: EHDAA:7840 xref: EHDAA:7984 xref: EHDAA2:0000188 is_a: UBERON:0000481 {source="EHDAA2"} ! multi-tissue structure is_a: UBERON:0004906 ! implied link automatically realized ! ectodermal gut relationship: develops_from UBERON:0009671 {source="EHDAA2"} ! nasal fin relationship: part_of UBERON:0000166 {source="EHDAA2"} ! oral opening relationship: part_of UBERON:0005384 {source="EHDAA2"} ! nasal cavity epithelium [Term] id: UBERON:0009673 name: accessory XI nerve cranial component xref: EHDAA:5574 xref: EHDAA2:0000107 xref: EMAPA:17266 xref: MA:0001089 xref: OG:0001174 is_a: UBERON:0001785 ! cranial nerve relationship: part_of UBERON:0002019 {source="MA"} ! spinal accessory nerve [Term] id: UBERON:0009674 name: accessory XI nerve spinal component xref: EHDAA:5576 xref: EHDAA2:0000108 xref: EMAPA:17160 xref: MA:0001090 xref: OG:0001115 is_a: UBERON:0001780 {source="MA"} ! spinal nerve relationship: part_of UBERON:0002019 {source="EHDAA2"} ! spinal accessory nerve [Term] id: UBERON:0009675 name: facial VII nerve chorda tympani branch xref: EHDAA:3719 xref: EHDAA2:0000490 xref: EMAPA:18217 xref: MA:0001092 xref: OG:0001343 is_a: UBERON:0001647 ! implied link automatically realized ! facial nerve is_a: UBERON:0001785 ! cranial nerve relationship: part_of UBERON:0001647 {source="EHDAA2"} ! facial nerve [Term] id: UBERON:0009676 name: telencephalic vesicle comment: todo - all vesicles xref: EHDAA:1993 xref: EHDAA:2671 xref: EHDAA2:0001981 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0009678 name: tooth row def: "Anatomical cluster consisting of adjacent teeth constituting a row." [ZFIN:curator] synonym: "row of teeth" EXACT [UBERON:cjm] synonym: "tooth rows" EXACT PLURAL [ZFA:0001642] xref: ZFA:0001642 is_a: UBERON:0003672 ! dentition [Term] id: UBERON:0009679 name: set of lower jaw teeth synonym: "lower jaw teeth" EXACT [EHDAA2:0001029] xref: EHDAA2:0001029 is_a: UBERON:0009678 ! tooth row relationship: part_of UBERON:0003278 {source="EHDAA2"} ! skeleton of lower jaw [Term] id: UBERON:0009680 name: set of upper jaw teeth synonym: "upper jaw teeth" EXACT [EHDAA2:0002129] xref: EHDAA2:0002129 is_a: UBERON:0009678 ! tooth row relationship: part_of UBERON:0003277 {source="EHDAA2"} ! skeleton of upper jaw [Term] id: UBERON:0009687 name: middle cardiac vein synonym: "lesser cardiac vein" EXACT [FMA:4713] synonym: "posterior interventricular vein" EXACT [FMA:4713] xref: EHDAA2:0004509 xref: FMA:4713 xref: ncithesaurus:Middle_Cardiac_Vein is_a: UBERON:0004148 {source="FMA"} ! coronary vein [Term] id: UBERON:0009688 name: posterior inferior cerebellar artery synonym: "posterior inferior cerebellar artery" EXACT [EHDAA2:0000660] xref: EHDAA2:0000660 xref: FMA:50518 xref: ncithesaurus:Posterior_Inferior_Cerebellar_Artery is_a: UBERON:0001637 {source="EHDAA2"} ! artery is_a: UBERON:0003834 ! implied link automatically realized ! thoracic segment blood vessel relationship: branch_of UBERON:0001535 {source="FMA"} ! vertebral artery relationship: develops_from UBERON:0001535 {source="EHDAA2"} ! vertebral artery relationship: part_of UBERON:0001535 {source="FMA"} ! vertebral artery [Term] id: UBERON:0009689 name: anterior inferior cerebellar artery xref: EHDAA2:0000587 xref: FMA:50544 xref: ncithesaurus:Anterior_Inferior_Cerebellar_Artery is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure is_a: UBERON:0001637 {source="EHDAA2"} ! artery is_a: UBERON:0003472 ! implied link automatically realized ! cerebellar artery is_a: UBERON:0005911 ! implied link automatically realized ! endo-epithelium relationship: branch_of UBERON:0001633 {source="FMA"} ! basilar artery relationship: develops_from UBERON:0001532 {source="EHDAA2"} ! internal carotid artery relationship: develops_from UBERON:0001633 {source="EHDAA2"} ! basilar artery relationship: part_of UBERON:0001633 {source="FMA"} ! basilar artery relationship: part_of UBERON:0003472 {source="EHDAA2"} ! cerebellar artery [Term] id: UBERON:0009692 name: lumen of pharyngotympanic tube synonym: "auditory tube lumen" EXACT [EHDAA2:0004118] synonym: "lumen of auditory tube" EXACT [FMA:60079] synonym: "lumen of eustachian tube" EXACT [FMA:60079] synonym: "pharyngotympanic tube lumen" EXACT [FMA:60079] xref: EHDAA2:0004118 xref: FMA:60079 is_a: UBERON:0005082 {source="EHDAA2"} ! tube lumen relationship: develops_from UBERON:0005625 {source="EHDAA2"} ! tubotympanic recess relationship: part_of UBERON:0002393 {source="FMA"} ! pharyngotympanic tube [Term] id: UBERON:0009695 name: epithelium of laryngopharynx synonym: "epithelium of laryngeal pharynx" EXACT [FMA:62454] synonym: "laryngopharynx epithelium" EXACT [FMA:62454] xref: EHDAA2:0004575 xref: FMA:62454 is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium is_a: UBERON:0003351 ! implied link automatically realized ! pharyngeal epithelium relationship: develops_from UBERON:0007690 {source="EHDAA2"} ! early pharyngeal endoderm relationship: part_of UBERON:0001051 {source="EHDAA2"} ! hypopharynx relationship: part_of UBERON:0003929 {source="EHDAA2"} ! gut epithelium [Term] id: UBERON:0009697 name: epithelium of appendix synonym: "appendix epithelium" EXACT [FMA:63581] synonym: "epithelium of vermiform appendix" EXACT [FMA:63581] xref: EHDAA2:0004561 xref: FMA:63581 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001277 {source="FMA"} ! intestinal epithelium is_a: UBERON:0005636 ! implied link automatically realized ! caecum epithelium is_a: UBERON:0007499 {source="EHDAA2"} ! epithelial sac is_a: UBERON:0009854 ! implied link automatically realized ! digestive tract diverticulum relationship: develops_from UBERON:0005636 {source="EHDAA2"} ! caecum epithelium relationship: part_of UBERON:0001154 {source="EHDAA2"} ! appendix relationship: part_of UBERON:0003929 {source="EHDAA2"} ! gut epithelium relationship: part_of UBERON:0004989 {source="FMA"} ! mucosa of appendix [Term] id: UBERON:0009708 name: dorsal pancreas subset: organ_slim xref: EHDAA2:0001371 xref: FMA:79793 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002365 {source="EHDAA2"} ! exocrine gland is_a: UBERON:0002368 ! implied link automatically realized ! endocrine gland is_a: UBERON:0005177 ! implied link automatically realized ! trunk organ relationship: develops_from UBERON:0003923 {source="EHDAA2"} ! dorsal pancreatic bud relationship: part_of UBERON:0001264 {source="EHDAA2"} ! pancreas [Term] id: UBERON:0009709 name: ventral pancreas subset: organ_slim xref: EHDAA2:0001393 xref: FMA:79794 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002365 {source="EHDAA2"} ! exocrine gland is_a: UBERON:0002368 ! implied link automatically realized ! endocrine gland is_a: UBERON:0005177 ! implied link automatically realized ! trunk organ relationship: develops_from UBERON:0003924 {source="EHDAA2"} ! ventral pancreatic bud relationship: part_of UBERON:0001264 {source="EHDAA2"} ! pancreas [Term] id: UBERON:0009712 name: endocardium of right ventricle def: "Endocardium of ventricle which is continuous tricuspid valve, pulmonary valve and with the tunica intima of the pulmonary trunk." [FMA:9536] synonym: "right ventricular endocardium" EXACT [FMA:9536] xref: EHDAA2:0002188 xref: FMA:9536 is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium is_a: UBERON:0001081 {source="FMA"} ! endocardium of ventricle is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue is_a: UBERON:0006914 ! implied link automatically realized ! squamous epithelium relationship: attached_to UBERON:0006567 {source="FMA"} ! right ventricle myocardium relationship: part_of UBERON:0004706 {source="EHDAA2"} ! bulbus cordis [Term] id: UBERON:0009713 name: endocardium of left ventricle def: "Endocardium of ventricle which is continuous with mitral valve , aortic valve, atrioventricular septum and the tunica intima of the aorta." [FMA:9559] synonym: "left ventricular endocardium" EXACT [FMA:9559] xref: EHDAA2:0002182 xref: FMA:9559 is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium is_a: UBERON:0001081 {source="FMA"} ! endocardium of ventricle is_a: UBERON:0006914 ! implied link automatically realized ! squamous epithelium relationship: attached_to UBERON:0006566 {source="FMA"} ! left ventricle myocardium relationship: develops_from UBERON:0006283 {source="EHDAA2"} ! primitive ventricle of heart [Term] id: UBERON:0009714 name: intermaxillary process xref: EHDAA2:0000868 is_a: UBERON:0009292 ! embryonic nasal process relationship: develops_from UBERON:0004067 {source="EHDAA2"} ! lateral nasal prominence relationship: develops_from UBERON:0004068 {source="EHDAA2"} ! medial nasal prominence relationship: part_of UBERON:0004066 {source="EHDAA2"} ! frontonasal prominence [Term] id: UBERON:0009715 name: stomodeal cavity is_a: UBERON:0002553 ! implied link automatically realized ! anatomical cavity relationship: surrounded_by UBERON:0000930 intersection_of: UBERON:0002553 ! anatomical cavity intersection_of: surrounded_by UBERON:0000930 ! stomodeum [Term] id: UBERON:0009716 name: cupular organ def: "Epithelial sense organ containing the cupula housing a gelatinous material elongated from the basement of the organ toward the atrial cavity. The basement of the cupular organ consists of two cell types: sensory cells and support cell" [DOI:10.2108/zsj.27.842] comment: Homology: possible homologues of neuromasts in the inner ear (Bone & Ryan, 1978; Wada et al 1998). In the tunicate cupular organ, the sensory cell is a primary neuron sending an axon to the CNS. The sensory cilium is within a deep indentation of the cell and is surrounded by a collar of short microvilli. is_a: UBERON:0000020 ! sense organ [Term] id: UBERON:0009717 name: coronal organ def: "Mechanoreceptor organ found in oral siphon of botryllid ascidians, made of hair cells, similar to the vertebrate octavolateralis system. A possible candidate of the vertebrate lateral line." [DOI:10.1002/jez.b.21013] subset: organ_slim is_a: UBERON:0000020 ! sense organ relationship: part_of UBERON:0009720 ! oral siphon [Term] id: UBERON:0009718 name: neurohypophyseal duct def: "Embryonic duct that is the rudiment of cerebral ganglion and and neural gland of adult in the ascidians." [DOI:10.1002/jez.b.21013] comment: Homology: candidate homolog for both neural crest and for the combined olfactory and adenohypophyseal placodes (Burighel et al., 2003; Manni et al., 2004a). Development: During formation of the adult ascidian, the ectodermal neurohypophyseal duct fuses with an evagination of the pharynx to form the neural gland rudiment is_a: UBERON:0000058 ! duct relationship: homologous_to UBERON:0002196 {source="PMID:11523831"} ! adenohypophysis relationship: homologous_to UBERON:0009122 {source="Manni 1999"} ! adenohypophyseal placode [Term] id: UBERON:0009719 name: siphon def: "tubular appendage for drawing or ejecting fluids" [] xref: BTO:0002056 is_a: UBERON:0000026 ! appendage relationship: develops_from UBERON:0009894 ! siphon primordium [Term] id: UBERON:0009720 name: oral siphon synonym: "branchial siphon" RELATED [] synonym: "pharyngeal siphon" RELATED [] is_a: UBERON:0009719 ! siphon relationship: develops_from UBERON:0009896 ! oral siphon primordia [Term] id: UBERON:0009721 name: atrial siphon is_a: UBERON:0009719 ! siphon relationship: develops_from UBERON:0009895 ! atrial siphon primordia [Term] id: UBERON:0009722 name: entire pharyngeal arch endoderm synonym: "pharyngeal arch endoderm" RELATED [EHDAA2:0004621] xref: EHDAA2:0004621 is_a: UBERON:0000477 {source="EHDAA2"} ! anatomical cluster is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure relationship: part_of UBERON:0003929 {source="EHDAA2"} ! gut epithelium [Term] id: UBERON:0009731 name: sublaminar layers S3 or S4 def: "One of sublaminar layers S3 or S4." [GOC:plr] xref: CP:0001040 is_a: UBERON:0008921 ! substratum of layer of retina union_of: UBERON:0008924 ! sublaminar layer S3 union_of: UBERON:0008925 ! sublaminar layer S4 [Term] id: UBERON:0009732 name: sublaminar layers S1 or S2 or S5 def: "One of sublaminar layers S1, S2, or S5." [GOC:plr] xref: CP:0001041 is_a: UBERON:0008921 ! substratum of layer of retina union_of: UBERON:0008922 ! sublaminar layer S1 union_of: UBERON:0008923 ! sublaminar layer S2 union_of: UBERON:0008926 ! sublaminar layer S5 [Term] id: UBERON:0009733 name: sublaminar layers S1 or S2 or S3 def: "One of sublaminar layers S1, S2, or S3." [GOC:plr] xref: CP:0001042 is_a: UBERON:0008921 ! substratum of layer of retina union_of: UBERON:0008922 ! sublaminar layer S1 union_of: UBERON:0008923 ! sublaminar layer S2 union_of: UBERON:0008924 ! sublaminar layer S3 [Term] id: UBERON:0009734 name: sublaminar layers S2 or S3 or S4 def: "One of sublaminar layers S2, S3, or S4." [GOC:plr] xref: CP:0001043 is_a: UBERON:0008921 ! substratum of layer of retina union_of: UBERON:0008923 ! sublaminar layer S2 union_of: UBERON:0008924 ! sublaminar layer S3 union_of: UBERON:0008925 ! sublaminar layer S4 [Term] id: UBERON:0009735 name: sublaminar layers S1 or S3 or S4 def: "One of sublaminar layers S1, S3, or S4." [GOC:plr] xref: CP:0001044 is_a: UBERON:0008921 ! substratum of layer of retina union_of: UBERON:0008922 ! sublaminar layer S1 union_of: UBERON:0008924 ! sublaminar layer S3 union_of: UBERON:0008925 ! sublaminar layer S4 [Term] id: UBERON:0009736 name: sublaminar layers S3 or S4 or S5 def: "One of sublaminar layers S3, S4, or S5." [GOC:plr] xref: CP:0001045 is_a: UBERON:0008921 ! substratum of layer of retina union_of: UBERON:0008924 ! sublaminar layer S3 union_of: UBERON:0008925 ! sublaminar layer S4 union_of: UBERON:0008926 ! sublaminar layer S5 [Term] id: UBERON:0009737 name: sublaminar layers S1 or S2 or S3 or S4 def: "One of sublaminar layers S1, S2, S3, or S4." [GOC:plr] xref: CP:0001046 is_a: UBERON:0008921 ! substratum of layer of retina union_of: UBERON:0008922 ! sublaminar layer S1 union_of: UBERON:0008923 ! sublaminar layer S2 union_of: UBERON:0008924 ! sublaminar layer S3 union_of: UBERON:0008925 ! sublaminar layer S4 [Term] id: UBERON:0009738 name: border of sublaminar layers S1 and S2 def: "The region extending out from the boundary between layers S1 and S2." [GOC:plr, UBERON:cjm] xref: CP:0001038 is_a: UBERON:0009740 ! implied link automatically realized ! border between sublaminar layers relationship: overlaps UBERON:0008922 relationship: overlaps UBERON:0008923 intersection_of: UBERON:0009740 ! border between sublaminar layers intersection_of: overlaps UBERON:0008922 ! sublaminar layer S1 intersection_of: overlaps UBERON:0008923 ! sublaminar layer S2 relationship: part_of UBERON:0008927 ! sublaminar layers S1 or S2 [Term] id: UBERON:0009739 name: border of sublaminar layers S3 and S4 def: "The region extending out from the boundary between sublaminar layers S3 and S4." [GOC:plr, UBERON:cjm] xref: CP:0001039 is_a: UBERON:0009740 ! implied link automatically realized ! border between sublaminar layers relationship: overlaps UBERON:0008924 relationship: overlaps UBERON:0008925 intersection_of: UBERON:0009740 ! border between sublaminar layers intersection_of: overlaps UBERON:0008924 ! sublaminar layer S3 intersection_of: overlaps UBERON:0008925 ! sublaminar layer S4 relationship: part_of UBERON:0009731 ! sublaminar layers S3 or S4 [Term] id: UBERON:0009740 name: border between sublaminar layers def: "A region of the retina corresponding to a portion of two adjacent substratum layers." [UBERON:cjm] is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure is_a: UBERON:0004923 ! organ component layer relationship: overlaps UBERON:0008921 ! substratum of layer of retina relationship: part_of UBERON:0000966 ! retina [Term] id: UBERON:0009741 name: tailbud stage def: "Any of the developmental stages from Nieuwkoop and Faber stage 20 to stage 44 (feeding), including the beginning of hatching (NF stage 35/36)." [ISBN:0815318960] xref: XAO:1000007 is_a: UBERON:0000068 {source="XAO"} ! embryo stage [Term] id: UBERON:0009742 name: proamniotic cavity def: "the cavity of the developing embryo that is formed within the epiblast tissue prior to the closing of the proamniotic canal by the amniotic folds" [MP:0011197] is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0002553 ! anatomical cavity [Term] id: UBERON:0009743 name: visceral yolk sac cavity def: "the closed space containing the yolk, formed by the fusion of the edges of the embryonic epiblast (hypoblast) and later surrounded by the visceral yolk sac (hypoblast and visceral yolk sac mesoderm)" [MP:0011201] is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0005251 ! implied link automatically realized ! yolk sac cavity relationship: part_of UBERON:0008852 intersection_of: UBERON:0002553 ! anatomical cavity intersection_of: part_of UBERON:0008852 ! visceral yolk sac [Term] id: UBERON:0009744 name: lymph node medullary sinus def: "the channels in the lymph node medulla that separate the medullary cords and are crossed by a reticulum of cells and fibers and bounded by littoral cells; lymph flows through the medullary sinus from the cortical sinuses and into the efferent lymphatic vessels" [MP:0011222] is_a: UBERON:0004111 ! anatomical conduit relationship: part_of UBERON:0002007 ! medulla of lymph node [Term] id: UBERON:0009745 name: lymph node medullary cord def: "the dense rope-like structures of lymphatic tissue located between the medullary sinuses in the medulla of a lymph node" [MP:0011224] is_a: UBERON:0000061 ! anatomical structure relationship: adjacent_to UBERON:0009744 ! lymph node medullary sinus relationship: part_of UBERON:0002007 ! medulla of lymph node [Term] id: UBERON:0009746 name: head fold def: "the crescent-shaped, ventrally located fold of the embryonic disc at the future cephalic end of the developing embryo" [MP:0011257] xref: SCTID:361453004 is_a: UBERON:0005291 ! embryonic tissue disjoint_from: UBERON:0005062 ! neural fold [Term] id: UBERON:0009747 name: tail fold def: "the crescent-shaped, ventrally located fold of the embryonic disc at the future caudal end of the developing embryo" [MP:0011258] xref: SCTID:361439004 is_a: UBERON:0005291 ! embryonic tissue [Term] id: UBERON:0009748 name: cephalic neural fold def: "the elevated margins of the neural groove that are located in the future cephalic region of the embryo" [MP:0011259] xref: EMAPA:16090 is_a: UBERON:0005062 ! neural fold [Term] id: UBERON:0009749 name: limb mesenchyme def: "the primordial embryonic connective tissue of the developing limbs, autopods and digits, consisting of mesenchymal cells supported in interlaminar jelly, that derive mostly from the mesoderm and contribute to limb connective tissue, bone and musculature in conjunction with myotome cells." [MP:0011261] synonym: "limb mesoderm" RELATED [Geisha:syn] is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue relationship: part_of UBERON:0002101 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0002101 ! limb relationship: part_of UBERON:0003285 ! limb of embryo [Term] id: UBERON:0009750 name: spleen mesenchyme def: "the embryonic connective tissue made up of loosely aggregated mesenchymal cells, supported by interlaminar jelly, that gives rise to the developing spleen" [MP:0011263] is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005256 ! implied link automatically realized ! trunk mesenchyme relationship: part_of UBERON:0002106 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0002106 ! spleen [Term] id: UBERON:0009751 name: cardiac mesenchyme def: "the embryonic connective tissue made up of loosely aggregated mesenchymal cells, supported by interlaminar jelly, that gives rise to the developing cardiac structures" [MP:0011264] comment: Editor note: decide whether to merge with cardiac mesoderm. Check start/end stages xref: EHDAA2:0004162 is_a: UBERON:0000477 {source="EHDAA2"} ! anatomical cluster is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme relationship: part_of UBERON:0000948 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0000948 ! heart [Term] id: UBERON:0009752 name: pancreas mesenchyme def: "the embryonic connective tissue made up of loosely aggregated mesenchymal cells, supported by interlaminar jelly, that gives rise to the developing pancreas" [MP:0011265] is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005256 ! implied link automatically realized ! trunk mesenchyme relationship: part_of UBERON:0001264 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001264 ! pancreas [Term] id: UBERON:0009753 name: adrenal gland cortex zone synonym: "region of adrenal cortex" RELATED [FMA:69086] xref: FMA:69086 xref: MA:0001887 is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001235 {source="MA"} ! adrenal cortex [Term] id: UBERON:0009754 name: blubber def: "a thick layer of vascularized adipose tissue found under the skin of all cetaceans, pinnipeds and sirenians." [Wikipedia:Blubber] comment: Lipid-rich, collagen fiber–laced blubber comprises the hypodermis and covers the whole body, except for parts of the appendages, strongly attached to the musculature and skeleton by highly organized, fan-shaped networks of tendons and ligaments. It can comprise up to 50% of the body mass of some marine mammals during some points in their lives, and can range from two inches (5 cm) thick in dolphins and smaller whales, to more than 12 inches (30 cm)thick in some bigger whales, such as right and bowhead whales xref: SCTID:83953006 is_a: UBERON:0002190 {source="Wikipedia"} ! subcutaneous adipose tissue [Term] id: UBERON:0009755 name: spermaceti def: "wax present in the head cavities of the sperm whale." [Wikipedia:Spermaceti] is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0009756 name: spermaceti organ subset: organ_slim is_a: UBERON:0000062 ! implied link automatically realized ! organ relationship: secretes UBERON:0009755 intersection_of: UBERON:0000062 ! organ intersection_of: secretes UBERON:0009755 ! spermaceti [Term] id: UBERON:0009757 name: ambergris def: "a biliary secretion of the intestines of the sperm whale." [Wikipedia:Ambergris] is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0009758 name: abdominal ganglion xref: SCTID:280508003 is_a: UBERON:0007134 ! implied link automatically realized ! trunk ganglion relationship: part_of UBERON:0002417 intersection_of: UBERON:0000045 ! ganglion intersection_of: part_of UBERON:0002417 ! abdominal segment of trunk disjoint_from: UBERON:0008964 ! abdominal ganglion of visceral hump [Term] id: UBERON:0009767 name: proximal interphalangeal joint xref: FMA:65022 is_a: UBERON:0006658 ! inter-phalangeal joint [Term] id: UBERON:0009768 name: distal interphalangeal joint xref: FMA:65024 is_a: UBERON:0006658 ! inter-phalangeal joint [Term] id: UBERON:0009769 name: left common cardinal vein synonym: "common cardinal vein left " EXACT [EHDAA2:0000304] xref: EHDAA2:0000304 xref: FMA:70311 xref: SCTID:361506000 is_a: UBERON:0002064 {source="FMA"} ! common cardinal vein relationship: part_of UBERON:0004344 {source="EHDAA2"} ! cardinal vein [Term] id: UBERON:0009770 name: precardinal vein xref: FMA:70309 is_a: UBERON:0001638 {source="EHDAA2"} ! vein is_a: UBERON:0002050 {source="FMA"} ! embryonic structure is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue relationship: part_of UBERON:0004344 {source="EHDAA2-generalized"} ! cardinal vein [Term] id: UBERON:0009771 name: precardinal vein left synonym: "left precardinal vein" EXACT [FMA:70313] xref: EHDAA2:0000127 xref: FMA:70313 is_a: UBERON:0009770 {source="FMA"} ! precardinal vein [Term] id: UBERON:0009772 name: precardinal vein right synonym: "right precardinal vein" EXACT [FMA:70312] xref: EHDAA2:0004537 xref: FMA:70312 is_a: UBERON:0009770 {source="FMA"} ! precardinal vein [Term] id: UBERON:0009773 name: renal tubule def: "A renal tubule is a tube that filters, re-absorbs and secretes substances to rid an organism of waste and to play a role in fluid homeostasis." [GO:0061333, GOC:dph, GOC:mtg_kidney_jan10] subset: grouping_class synonym: "renal tubule (generic)" EXACT [UBERON:cjm] synonym: "tubule of excretory system" EXACT [OBOL:automatic, UBERON:cjm] is_a: UBERON:0003914 ! epithelial tube is_a: UBERON:0006555 ! implied link automatically realized ! excretory tube relationship: part_of UBERON:0001008 ! excretory system [Term] id: UBERON:0009774 name: embryonic midbrain hindbrain boundary is_a: UBERON:0006800 {source="ZFA"} ! anatomical line relationship: part_of UBERON:0006238 ! future brain [Term] id: UBERON:0009775 name: lateral medullary reticular complex synonym: "lateral group of medullary reticular formation" EXACT [FMA:72573] synonym: "lateral medullary reticular group" EXACT [FMA:72573] synonym: "lateral reticular formation of the medulla oblongata" EXACT [FMA:72573] xref: FMA:72573 is_a: UBERON:0002579 ! implied link automatically realized ! regional part of medullary reticular formation is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter is_a: UBERON:0007245 {source="FMA"} ! nuclear complex of neuraxis relationship: part_of UBERON:0002559 {source="FMA"} ! medullary reticular formation [Term] id: UBERON:0009776 name: intermediate reticular formation xref: TAO:0000219 xref: ZFA:0000219 is_a: UBERON:0002579 ! implied link automatically realized ! regional part of medullary reticular formation is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter is_a: UBERON:0007245 {source="UBERON:cjm"} ! nuclear complex of neuraxis relationship: part_of UBERON:0002559 {source="GO"} ! medullary reticular formation [Term] id: UBERON:0009777 name: intermediate reticular nucleus xref: FMA:84336 is_a: UBERON:0002579 ! implied link automatically realized ! regional part of medullary reticular formation is_a: UBERON:0007635 ! implied link automatically realized ! nucleus of medulla oblongata relationship: part_of UBERON:0009776 intersection_of: UBERON:0002308 ! nucleus of brain intersection_of: part_of UBERON:0009776 ! intermediate reticular formation [Term] id: UBERON:0009778 name: pleural sac def: "Serous sac, which has as parts the pleura and the pleural cavity. Examples: There are only two canonical instances, right and left pleural sacs." [FMA:9690] xref: FMA:9690 xref: SCTID:361996004 is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure is_a: UBERON:0005906 {source="FMA"} ! serous sac relationship: part_of UBERON:0001558 {source="FMA"} ! lower respiratory tract [Term] id: UBERON:0009779 name: cardiac muscle tissue of right auricle xref: EMAPA:16826 xref: EMAPA:17324 xref: FMA:84280 is_a: UBERON:0003378 {source="FMA"} ! cardiac muscle of auricular region [Term] id: UBERON:0009780 name: cardiac muscle tissue of left auricle xref: EMAPA:16818 xref: EMAPA:17318 xref: FMA:84281 is_a: UBERON:0003378 {source="FMA"} ! cardiac muscle of auricular region [Term] id: UBERON:0009834 name: dorsolateral prefrontal cortex def: "The dorsolateral prefrontal cortex (DL-PFC or DLPFC), according to a more restricted definition, is roughly equivalent to Brodmann areas 9 and 46.[1] According to a broader definition DL-PFC consists of the lateral portions of Brodmann areas 9 – 12, of areas 45, 46, and the superior part of area 47.[2] These regions mainly receive their blood supply from the middle cerebral artery. With respect to neurotransmitter systems, there is evidence that dopamine plays a particularly important role in DL-PFC.[2]DL-PFC is connected to the orbitofrontal cortex, and to a variety of brain areas, which include the thalamus, parts of the basal ganglia (the dorsal caudate nucleus), the hippocampus, and primary and secondary association areas of neocortex, including posterior temporal, parietal, and occipital areas" [Wikipedia:Dorsolateral_prefrontal_cortex] comment: check dorsolateral prefrontal neocortex is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: overlaps UBERON:0006483 ! brodmann (1909) area 46 relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0009835 name: anterior cingulate cortex def: "the frontal part of the cingulate cortex, that resembles a 'collar' form around the corpus callosum, the fibrous bundle that relays neural signals between the right and left cerebral hemispheres of the brain. It includes both the ventral and dorsal areas of the cingulate cortex, and appears to play a role in a wide variety of autonomic functions, such as regulating blood pressure and heart rate, as well as rational cognitive functions, such as reward anticipation, decision-making, empathy[1] and emotion." [Wikipedia:Anterior_cingulate_cortex] xref: BTO:0004249 xref: NIF_GrossAnatomy:birnlex_936 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0003027 {source="BTO"} ! cingulate cortex [Term] id: UBERON:0009836 name: Fronto-orbital gyrus synonym: "fronto-orbital gyrus" EXACT [NIF_GrossAnatomy:birnlex_1243] synonym: "orbito-frontal gyrus" EXACT [] synonym: "orbitofrontal gyrus" EXACT [] xref: NIF_GrossAnatomy:birnlex_1243 is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0004167 ! orbitofrontal cortex [Term] id: UBERON:0009840 name: lower rhombic lip def: "Posterior portion of the rhombic lip contained within rhombomeres 2-8. Gives rise to several brainstem nuclei and choroid plexus." [ZFIN:curator] synonym: "caudal rhombic lip" EXACT [UBERON:cjm] xref: TAO:0001441 xref: ZFA:0001441 is_a: UBERON:0000481 {source="ZFA"} ! multi-tissue structure is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain relationship: overlaps UBERON:0005507 {source="ZFA"} ! rhombomere 3 relationship: overlaps UBERON:0005511 {source="ZFA"} ! rhombomere 4 relationship: overlaps UBERON:0005515 {source="ZFA"} ! rhombomere 5 relationship: overlaps UBERON:0005519 {source="ZFA"} ! rhombomere 6 relationship: overlaps UBERON:0005523 {source="ZFA"} ! rhombomere 7 relationship: overlaps UBERON:0005527 {source="ZFA"} ! rhombomere 8 relationship: overlaps UBERON:0005569 {source="ZFA"} ! rhombomere 2 relationship: part_of UBERON:0006215 {source="ZFA"} ! rhombic lip [Term] id: UBERON:0009841 name: upper rhombic lip def: "Anterior-most region of dorsal hindbrain within rhombomere 1, adjacent the midbrain-hindbrain boundary." [ZFIN:curator] synonym: "cerebellar anlage" EXACT [ZFA:0001442] synonym: "presumptive cerebellum" EXACT [ZFA:0001442] synonym: "rostral rhombic lip" EXACT [DHB:URL] xref: TAO:0001442 xref: ZFA:0001442 is_a: UBERON:0000481 {source="ZFA"} ! multi-tissue structure is_a: UBERON:0002050 ! implied link automatically realized ! embryonic structure is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain relationship: part_of UBERON:0005499 {source="ZFA"} ! rhombomere 1 relationship: part_of UBERON:0006215 {source="ZFA"} ! rhombic lip [Term] id: UBERON:0009842 name: acinus def: "An acinus refers to any cluster of cells that resembles a many-lobed \"berry,\" such as a raspberry (acinus is Latin for berry). The berry-shaped termination of an exocrine gland, where the secretion is produced is acinar in form, as is the alveolar sac containing multiple alveoli in the lungs." [Wikipedia:Acinus] synonym: "acini" RELATED PLURAL [Wikipedia:Acinus] synonym: "glandular acinus" RELATED [] xref: FMA:55588 is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0009843 name: prostate epithelial cord def: "A solid cord of prostate epithelium." [GO:0060527, OBOL:automatic, PMID:18977204] comment: Complexity is conferred on the prostate during a postnatal development phase known as branching morphogenesis. Solid cords of prostate epithelium formed in utero elongate postnatally and their tips are bifurcated into primary, secondary, and tertiary branches in a pattern that is unique for each prostate lobe. Branching morphogenesis proceeds differentially for each of the three mouse prostate lobes (ventral, dorsolateral, and anterior) and is completed by about postnatal day 20 in mice, providing each lobe with unique glandular architecture [5]. It is important to note that the developing human prostate undergoes a similar series of morphogenetic events especially during prostatic bud formation, but gives rise to a mature glandular prostate that is unique from the rodent and features peripheral, central, and transitional zones[PMID:18977204] synonym: "cord of prostate epithelium" EXACT [PMID:18977204] synonym: "epithelial cord of prostate" EXACT [] is_a: UBERON:0000428 ! implied link automatically realized ! prostate epithelium is_a: UBERON:0005154 ! implied link automatically realized ! epithelial cord relationship: part_of UBERON:0002367 intersection_of: UBERON:0005154 ! epithelial cord intersection_of: part_of UBERON:0002367 ! prostate gland [Term] id: UBERON:0009844 name: urogenital sinus lumen xref: EHDAA2:0002142 is_a: UBERON:0000464 ! implied link automatically realized ! anatomical space relationship: surrounded_by UBERON:0000164 intersection_of: UBERON:0000464 ! anatomical space intersection_of: surrounded_by UBERON:0000164 ! primitive urogenital sinus relationship: develops_in UBERON:0009669 {source="EHDAA2"} ! embryonic cloacal lumen relationship: surrounded_by UBERON:0000164 {source="EHDAA2"} ! primitive urogenital sinus [Term] id: UBERON:0009845 name: urogenital sinus mesenchyme comment: Androgen receptor (AR) activation releases instructive signals from UGM that acts on UGS epithelium (UGE) to stimulate cell proliferation, form prostate ductal progenitors (prostatic buds), and regulate cell adhesion dynamics to permit prostatic bud outgrowth synonym: "UGM" EXACT [PMID:18977204] xref: EHDAA2:0004061 is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure is_a: UBERON:0009503 ! implied link automatically realized ! associated mesenchyme of hindgut relationship: part_of UBERON:0000164 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0000164 {source="PMID:18977204"} ! primitive urogenital sinus [Term] id: UBERON:0009846 name: embryonic cloacal epithelium synonym: "cloacal epithelium" EXACT [EHDAA2:0004585] xref: EHDAA2:0004585 is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium is_a: UBERON:0003353 ! implied link automatically realized ! epithelium of hindgut is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue relationship: part_of UBERON:0000163 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000163 ! embryonic cloaca relationship: develops_from UBERON:0003353 {source="EHDAA2"} ! epithelium of hindgut relationship: part_of UBERON:0003929 {source="EHDAA2"} ! gut epithelium [Term] id: UBERON:0009847 name: prostate field def: "a specific region of the urogenital sinus epithelium into the area in which the prostate gland will develop." [GO:0060515, GOC:dph, PMID:18977204] synonym: "prostate primordium" EXACT [] is_a: UBERON:0000483 ! epithelium is_a: UBERON:0004902 ! implied link automatically realized ! urogenital sinus epithelium is_a: UBERON:0005423 ! developing anatomical structure relationship: induced_by UBERON:0009845 {source="PMID:18977204"} ! urogenital sinus mesenchyme relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0004902 {source="PMID:18977204"} ! urogenital sinus epithelium [Term] id: UBERON:0009848 name: zona limitans intrathalamica def: "A narrow stripe of cells that lies between the prospective dorsal and ventral thalami. This boundary contains signals that pattern the prethalamic and thalamic territories of the future mid-diencephalon." [GO:0022006, GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, GOC:mtg_15jun06, PMID:11425897, PMID:16452095] synonym: "ZLI" EXACT [GO:0022006] xref: ZFA:0001344 is_a: UBERON:0006800 ! implied link automatically realized ! anatomical line relationship: adjacent_to UBERON:0001900 relationship: adjacent_to UBERON:0004703 intersection_of: UBERON:0006800 ! anatomical line intersection_of: adjacent_to UBERON:0001900 ! subthalamus intersection_of: adjacent_to UBERON:0004703 ! dorsal thalamus [Term] id: UBERON:0009849 name: tadpole stage def: "wholly aquatic larval stage in the life cycle of an amphibian, particularly of a frog or toad[WP]. XAO: The stages from feeding to the end of metamorphosis. Encompasses Weisz's first-form tadpole (equivalent to NF stages 45 to 49), second-form tadpole (NF 49 to 56) and third-form tadpole (NF 56 to 60-plus) stages." [ISBN:0471209627, ISSN:0003-276X, Wikipedia:Tadpole] xref: XAO:1000008 is_a: UBERON:0000069 ! larval stage [Term] id: UBERON:0009850 name: nematode larva is_a: UBERON:0002548 ! larva relationship: existence_starts_and_ends_during UBERON:0004729 intersection_of: UBERON:0000468 ! multi-cellular organism intersection_of: existence_starts_and_ends_during UBERON:0004729 ! nematode larval stage [Term] id: UBERON:0009851 name: border of sublaminar layers S4 and S5 def: "The intersection of sublaminar layers S4 and S5." [GOC:tfm] is_a: UBERON:0009740 ! implied link automatically realized ! border between sublaminar layers relationship: overlaps UBERON:0008925 relationship: overlaps UBERON:0008926 intersection_of: UBERON:0009740 ! border between sublaminar layers intersection_of: overlaps UBERON:0008925 ! sublaminar layer S4 intersection_of: overlaps UBERON:0008926 ! sublaminar layer S5 relationship: part_of UBERON:0008929 ! sublaminar layers S4 or S5 [Term] id: UBERON:0009852 name: border of sublaminar layers S2 and S3 def: "The intersection of sublaminar layers S2 and S3." [GOC:tfm] is_a: UBERON:0009740 ! implied link automatically realized ! border between sublaminar layers relationship: overlaps UBERON:0008923 relationship: overlaps UBERON:0008924 intersection_of: UBERON:0009740 ! border between sublaminar layers intersection_of: overlaps UBERON:0008923 ! sublaminar layer S2 intersection_of: overlaps UBERON:0008924 ! sublaminar layer S3 relationship: part_of UBERON:0008928 ! sublaminar layers S2 or S3 [Term] id: UBERON:0009853 name: body of uterus def: "that part of the uterus above the isthmus and below the orifices of the uterine tubes." [http://medical-dictionary.thefreedictionary.com/corpus+uteri] synonym: "corpus uteri" EXACT [UBERON:cjm] synonym: "uterine body" EXACT [FMA:17739] synonym: "uterine corpus" EXACT [FMA:17739] xref: FMA:17739 xref: ncithesaurus:Corpus_Uteri is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure relationship: part_of UBERON:0000995 {source="FMA"} ! uterus [Term] id: UBERON:0009854 name: digestive tract diverticulum def: "Branch or outpocketing of the digestive tract." [UBERON:cjm] synonym: "diverticulum of gut" RELATED [FBbt:00100316] synonym: "intestinal pouch" RELATED [] xref: FBbt:00100316 is_a: UBERON:0004921 ! subdivision of digestive tract is_a: UBERON:0009856 ! implied link automatically realized ! sac relationship: part_of UBERON:0001555 intersection_of: UBERON:0009856 ! sac intersection_of: part_of UBERON:0001555 ! digestive tract [Term] id: UBERON:0009855 name: echinoderm gastric caecum def: "non-contractile pouch that is connected to the anterior stomach through a slit-like opening. This pouch is also well-connected to the haemal system through numerous haemal ducts within its connective tissue layer." [PMID:20955602] comment: The digestive tract of many metazoan invertebrates is characterized by the presence of caeca or diverticula that serve secretory and/or absorptive functions. With the development of various feeding habits, distinctive digestive organs may be present in certain taxa. This also holds true for sea urchins (Echinodermata: Echinoidea), in which a highly specialized gastric caecum can be found in members of a derived subgroup, the Irregularia (cake urchins, sea biscuits, sand dollars, heart urchins, and related forms)... Homologous with the more or less pronounced dilation of the anterior stomach that is observed in most "regular" sea urchin taxa[PMID:20955602] is_a: UBERON:0009854 ! digestive tract diverticulum [Term] id: UBERON:0009856 name: sac synonym: "diverticulum" RELATED [] synonym: "pouch" EXACT [] is_a: UBERON:0000061 ! implied link automatically realized ! anatomical structure [Term] id: UBERON:0009857 name: cavum septum pellucidum def: "Space enclosed within the laminae of the septum pelludicum, the membranous partition that seperates the frontal horns of the ventricle. contains cerebrospinal fluid (CSF) that filters from the ventricles through the septal laminae. bounded anteriorly by the genu of the corpus callosum; superiorly by the body of the corpus callosum; posteriorly by the anterior limb and pillars of the fornix; inferiorly by the anterior commissure and the rostrum of the corpus callosum; and laterally by the leaflets of the septum pellucidum. In humans, present in 100% of fetuses, but over 85% of them fuse by 3–6 months after birth." [BTO:0003447, Wikipedia:Cave_of_septum_pellucidum] synonym: "cave of septum pellucidum" EXACT [FMA:61874] synonym: "cavum of septum pellucidum" EXACT [FMA:61874] synonym: "cavum septi pellucidi" RELATED [Wikipedia:Cave_of_septum_pellucidum] synonym: "fifth ventricle" RELATED [FMA:61874, Wikipedia:Cave_of_septum_pellucidum] synonym: "septum pellucidum cave" EXACT [FMA:61874] synonym: "ventriculus septi pellucidi" EXACT [FMA:61874] xref: BTO:0003447 xref: FMA:61874 xref: ncithesaurus:Fifth_Ventricle xref: SCTID:180933005 is_a: UBERON:0002553 ! implied link automatically realized ! anatomical cavity relationship: surrounded_by UBERON:0004714 intersection_of: UBERON:0002553 ! anatomical cavity intersection_of: surrounded_by UBERON:0004714 ! septum pellucidum relationship: surrounded_by UBERON:0004714 {source="FMA-modified"} ! septum pellucidum [Term] id: UBERON:0009858 name: outer fibrous layer of periosteum synonym: "capsular layer of periosteum" EXACT [FMA:234354] synonym: "fibrous layer of periosteum" EXACT [FMA:234354] synonym: "outer fibrous layer of periosteum" EXACT [FMA:234354] xref: FMA:234354 is_a: UBERON:0000158 ! membranous layer is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0002515 {source="FMA"} ! periosteum [Term] id: UBERON:0009859 name: endosteum def: "a thin layer of connective tissue that lines the surface of the bony tissue that forms the medullary cavity of long bones" [Wikipedia:Endosteum] xref: FMA:32692 xref: ncithesaurus:Endosteum xref: SCTID:57487002 is_a: UBERON:0000158 ! membranous layer is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0001474 ! bone [Term] id: UBERON:0009860 name: ascidian digestive gland xref: ANISEED:1239655 is_a: UBERON:0006925 ! digestive gland [Term] id: UBERON:0009861 name: ascidian neural complex def: "." [PMID:21558186] is_a: UBERON:0002530 ! gland [Term] id: UBERON:0009862 name: ascidian cerebral ganglion comment: the CG appears to be a diencephalic brain. It originates mainly from the posterior sensory vesicle (Takamura 2002; Dufour et al. 2006) and shows endocrine activity. For examples, ascidian genes orthologous to GnRH and OT/VP, which are secreted from the hypothalamus and the NH, respectively, in vertebrates, are expressed in the cortex of the CG, suggesting that the NC is not distinctly compartmentalized as are vertebrate brains (Tsutsui et al. 1998; Kavanaugh et al. 2005; Kawada et al. 2008; Ukena et al. 2008; Kawada et al. 2009). Moreover, PC2 expression in the cortex of the CG supports possible endocrine activity (Sekiguchi et al. 2007). is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0009861 ! ascidian neural complex [Term] id: UBERON:0009863 name: ascidian ciliated funnel is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0009861 ! ascidian neural complex [Term] id: UBERON:0009864 name: ascidian neural gland comment: assumed to be a pituitary homolog. Current data from the Ciona genome suggests that the ascidian NC, including the CF, is unlikely to be a pituitary-like endocrine gland, while it is necessary to examine other ascidians before drawing a final conclusion [PMID:21558186] is_a: UBERON:0000064 ! organ part relationship: develops_from UBERON:0009718 ! neurohypophyseal duct relationship: homologous_to UBERON:0002196 {source="PMID:21558186"} ! adenohypophysis relationship: part_of UBERON:0009861 ! ascidian neural complex [Term] id: UBERON:0009865 name: Hatschek's pit def: "a deep ciliated fossa on the dorsal midline of the buccal cavity (the region of the gut behind the mouth). Among other things, it secrets mucus which entraps food particles from the water[WP]." [Wikipedia:Hatschek's_pit] is_a: UBERON:0006846 ! groove relationship: develops_from UBERON:0009868 ! Hatschek's left diverticulum relationship: develops_from UBERON:0009957 ! ciliated pit relationship: homologous_to UBERON:0002196 {source="PMID:9636084"} ! adenohypophysis [Term] id: UBERON:0009866 name: Hatschek's nephridium def: "an unpaired kidney whose duct opens into the anterior pharynx. It can be seen as a deep ciliated fossa on the dorsal midline of the buccal cavity (mouth). Among other things, it secrets mucus which entraps food particles from the water[WP]." [] subset: organ_slim is_a: UBERON:0000062 ! organ is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0001008 ! excretory system [Term] id: UBERON:0009867 name: Hatschek's diverticulum is_a: UBERON:0001048 ! primordium relationship: part_of UBERON:0008814 ! pharyngeal system [Term] id: UBERON:0009868 name: Hatschek's left diverticulum is_a: UBERON:0009867 ! implied link automatically realized ! Hatschek's diverticulum relationship: part_of UBERON:0004531 intersection_of: UBERON:0009867 ! Hatschek's diverticulum intersection_of: part_of UBERON:0004531 ! left side of organism [Term] id: UBERON:0009869 name: Hatschek's right diverticulum is_a: UBERON:0009867 ! implied link automatically realized ! Hatschek's diverticulum relationship: part_of UBERON:0004532 intersection_of: UBERON:0009867 ! Hatschek's diverticulum intersection_of: part_of UBERON:0004532 ! right side of organism [Term] id: UBERON:0009870 name: zone of stomach synonym: "gastric zone" EXACT [FMA:14558] xref: FMA:14558 xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/Regions_of_stomach.svg/500px-Regions_of_stomach.svg.png xref: SCTID:245415005 is_a: UBERON:0000064 ! organ part is_a: UBERON:0009034 ! implied link automatically realized ! stomach region relationship: part_of UBERON:0000945 {source="Obol"} ! stomach [Term] id: UBERON:0009871 name: nephrogenic zone def: "outer portion of the renal cortex. Site of formation of medullary and cortical elements." [] comment: Taxon notes: see PMID:12761251 for description of nephrogenic zone in dogfish. synonym: "nephrogenic tissue" RELATED [] xref: EMAPA:27721 xref: http://www.gudmap.org/Images/Organ_Summaries/Metanephros/NZ.png xref: MA:0002996 is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0002113 ! kidney [Term] id: UBERON:0009872 name: paired appendage xref: VAO:0000067 is_a: UBERON:0000026 {source="VAO"} ! appendage [Term] id: UBERON:0009875 name: pectoral appendage xref: VAO:0000125 is_a: UBERON:0009872 {source="VAO"} ! paired appendage relationship: has_part UBERON:0004708 ! limb/fin relationship: has_part UBERON:0007831 {source="VAO"} ! skeleton of pectoral girdle [Term] id: UBERON:0009876 name: pelvic appendage xref: VAO:0000126 is_a: UBERON:0009872 {source="VAO"} ! paired appendage relationship: has_part UBERON:0004708 ! limb/fin relationship: has_part UBERON:0007832 {source="VAO"} ! skeleton of pelvic girdle [Term] id: UBERON:0009877 name: metapodium def: "A distal segment of the limb, including either the metacarpal or the metatarsal elements" [MA:th] is_a: UBERON:0002529 ! limb segment relationship: part_of UBERON:0002470 {source="MA:th"} ! autopod [Term] id: UBERON:0009878 name: mesopodium skeleton is_a: UBERON:0006717 ! implied link automatically realized ! skeleton of autopod relationship: part_of UBERON:0006716 intersection_of: UBERON:0000075 ! subdivision of skeletal system intersection_of: part_of UBERON:0006716 ! mesopodium [Term] id: UBERON:0009879 name: tarsal skeleton def: "the cluster of bones in the foot between the tibia and fibula and the metatarsus. The bones of the tarsus do not belong to individual toes, whereas those of the metatarsus do. The joint between the tibia and fibula and the tarsus is referred to as the ankle joint[WP]." [Wikipedia:Tarsus_(skeleton)] synonym: "tarsus" RELATED [XAO:0003211] xref: SCTID:264228001 xref: XAO:0003211 is_a: UBERON:0001445 ! implied link automatically realized ! skeleton of foot is_a: UBERON:0009878 ! implied link automatically realized ! mesopodium skeleton relationship: part_of UBERON:0004454 intersection_of: UBERON:0000075 ! subdivision of skeletal system intersection_of: part_of UBERON:0004454 ! tarsus relationship: part_of UBERON:0001445 ! skeleton of foot [Term] id: UBERON:0009880 name: carpal skeleton def: "In tetrapods, the carpals is the sole cluster of the bones in the wrist between the radius and ulna and the metacarpus. The bones of the carpus do not belong to individual fingers (or toes in quadrupeds), whereas those of the metacarpus do. The corresponding part of the foot is the tarsus. The carpal bones allow the wrist to move and rotate vertically, horizontally and laterally. In human anatomy, the main role of the carpus is to facilitate effective positioning of the hand and powerful use of the extensors and flexors of the forearm, but the mobility of individual carpal bones increase the freedom of movements at the wrist. [WP,unvetted]." [Wikipedia:Carpus] comment: The structure of the carpus varies widely between different groups of tetrapods, even among those that retain the full set of five digits. In primitive fossil amphibians, such as Eryops, the carpus consists of three rows of bones; a proximal row of three carpals, a second row of four bones, and a distal row of five bones. The proximal carpals are referred to as the radiale, intermediale, and ulnare, after their proximal articulations, and are homologous with the scaphoid, lunate, and triquetal bones respectively. The remaining bones are simply numbered, as the first to fourth centralia (singular: centrale), and the first to fifth distal carpals. Primitively, each of the distal bones appears to have articulated with a single metacarpal. However, the vast majority of later vertebrates, including modern amphibians, have undergone varying degrees of loss and fusion of these primitive bones, resulting in a smaller number of carpals. Almost all mammals and reptiles, for example, have lost the fifth distal carpal, and have only a single centrale - and even this is missing in humans. The pisiform bone is somewhat unusual, in that it first appears in primitive reptiles, and is never found in amphibians. Because many tetrapods have less than five digits on the forelimb, even greater degrees of fusion are common, and a huge array of different possible combinations are found. The wing of a modern bird, for example, has only two remaining carpals; the radiale (the scaphoid of mammals) and a bone formed from the fusion of four of the distal carpals. In some macropods, the scaphoid and lunar bones are fused into the scaphollunar bone[14] [Wikipedia:Carpus#Evolutionary_variations] xref: XAO:0003207 is_a: UBERON:0001442 ! implied link automatically realized ! skeleton of hand is_a: UBERON:0009878 ! implied link automatically realized ! mesopodium skeleton relationship: part_of UBERON:0004452 intersection_of: UBERON:0000075 ! subdivision of skeletal system intersection_of: part_of UBERON:0004452 ! carpus relationship: part_of UBERON:0001442 ! skeleton of hand [Term] id: UBERON:0009881 name: anterior lateral plate mesoderm synonym: "ALPM" EXACT [ZFA:0005041] xref: TAO:0005041 xref: ZFA:0005041 is_a: UBERON:0000479 {source="ZFA"} ! tissue is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue relationship: part_of UBERON:0003081 {source="ZFA"} ! lateral plate mesoderm [Term] id: UBERON:0009882 name: anal column def: "One of a number of vertical folds, produced by an infolding of the mucous membrane and some of the muscular tissue in the upper half of the lumen of the anal canal. They are named after Giovanni Battista Morgagni who also has several other eponyms named after himself[WP]" [Wikipedia:Anal_columns] synonym: "column of Morgagni" EXACT [FMA:15713] xref: FMA:15713 xref: ncithesaurus:Anal_Column xref: SCTID:245444007 is_a: UBERON:0000064 ! organ part is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure relationship: part_of UBERON:0000159 ! anal canal [Term] id: UBERON:0009883 name: medullary ray def: "A renal, cortical lobule, consisting of the ascending or descending limbs of the loop of Henle or of the collecting tubules; medullary rays are regions where parallel arrays of straight tubules travel perpendicular to the capsule and extend from the cortex to the medulla." [MP:0011347, Wikipedia:Medullary_ray_(anatomy)] comment: Their name is potentially misleading -- the "medullary" refers to their destination, not their location. They are located only in the renal cortex, and not in the renal medulla synonym: "Ferrein's pyramid" EXACT [MP:0011347] synonym: "kidney medullary ray" EXACT [MP:0011347] synonym: "renal medullary ray" EXACT [MP:0011347] xref: BTO:0001155 xref: FMA:74299 is_a: UBERON:0000064 {source="FMA"} ! organ part relationship: overlaps UBERON:0001231 ! nephron tubule relationship: part_of UBERON:0001225 {source="MP"} ! cortex of kidney [Term] id: UBERON:0009885 name: interlobar artery def: "One of a set of curved arteries at the corticomedullary border of the kidney that arise from the interlobar arteries and give rise to the interlobular arteries." [MP:0011315, Wikipedia:Interlobar_arteries] comment: FMA only has the set term synonym: "arteriae interlobares renis" EXACT PLURAL [FMA:TA] synonym: "interlobar artery of kidney" EXACT [FMA:71637] synonym: "kidney interlobar artery" EXACT [] synonym: "renal interlobar artery" EXACT [MP:0011355] xref: FMA:71637 is_a: UBERON:0001637 ! artery disjoint_from: UBERON:0004723 {source="Wikipedia:Renal_circulation"} ! interlobular artery [Term] id: UBERON:0009887 name: interlobar vein def: "The interlobar veins are veins of the renal circulation which drain the renal lobes." [Wikipedia:Interlobar_veins] comment: FMA only has the set term synonym: "interlobar vein of kidney" EXACT [FMA:71631] synonym: "venae interlobares renis" EXACT PLURAL [FMA:TA] xref: FMA:71631 is_a: UBERON:0001638 ! vein disjoint_from: UBERON:0005168 ! interlobular vein [Term] id: UBERON:0009888 name: Koller's sickle def: "a local thickening of cells that acts as a margin separating sheets of cells from posterior margin of avian blastoderms from hypoblasts as they migrate anteriorly to push primary hypoblast cells anteriorly to form a secondary hypoblast known as the endoblast" [PMID:9693154, Wikipedia:Koller's_sickle] subset: early_development synonym: "Kohler's sickle" EXACT [] is_a: UBERON:0002050 ! embryonic structure [Term] id: UBERON:0009889 name: secondary heart field def: "extra-cardiac population of mesodermal progenitors that gives rise to the right ventricle and outflow tract." [PMID:17276708] comment: Taxon notes: "In general, the two studies in chick concluded that the contribution of the SHF was to the outflow tract, whereas the mouse work suggested that the second lineage contributed more broadly to the heart, including the outflow tract and much or all of the right ventricle [11–14]. These different conclusions may represent differences in the experimental approaches used or may represent bona fide differences in the contribution of the second lineage to the hearts of birds compared to mammals [11]. Alternatively, the secondary/anterior heart fields described in the chick may represent a subset of a broader field that makes a more substantial contribution to the heart, as the mouse studies suggested" [PMID:17276708] synonym: "anterior heart field" EXACT [PMID:17276708] synonym: "anterior/second heart field" EXACT [Geisha:syn] synonym: "second heart field" EXACT [XAO:0004186] synonym: "SHF" RELATED [XAO:0004186] xref: XAO:0004186 is_a: UBERON:0000479 ! tissue is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue relationship: anterior_to UBERON:0004140 {source="PMID:17276708"} ! heart field relationship: dorsal_to UBERON:0004140 {source="PMID:17276708"} ! heart field relationship: part_of UBERON:0000926 ! mesoderm [Term] id: UBERON:0009890 name: anterior intestinal portal def: "opening of the foregut into the midgut" [http://www.drugs.com/dict/fovea-cardiaca.html] synonym: "fovea cardiaca" EXACT [http://www.drugs.com/dict/fovea-cardiaca.html] is_a: UBERON:0004111 ! anatomical conduit relationship: adjacent_to UBERON:0001041 ! foregut relationship: adjacent_to UBERON:0001046 ! hindgut [Term] id: UBERON:0009891 name: facial mesenchyme synonym: "face mesenchyme" EXACT [] synonym: "mesenchyme of face" EXACT [] is_a: UBERON:0003104 ! mesenchyme relationship: part_of UBERON:0001456 ! face [Term] id: UBERON:0009892 name: ascidian anterior sensory vesicle xref: ANISEED:777309 is_a: UBERON:0000020 ! sense organ [Term] id: UBERON:0009893 name: ascidian ocellus xref: ANISEED:874489 is_a: UBERON:0000020 ! sense organ relationship: part_of UBERON:0009892 ! ascidian anterior sensory vesicle [Term] id: UBERON:0009894 name: siphon primordium xref: ANISEED:1210451 is_a: UBERON:0005423 ! developing anatomical structure [Term] id: UBERON:0009895 name: atrial siphon primordia xref: ANISEED:1210456 is_a: UBERON:0009894 ! siphon primordium [Term] id: UBERON:0009896 name: oral siphon primordia xref: ANISEED:1225922 is_a: UBERON:0009894 ! siphon primordium [Term] id: UBERON:0009897 name: right auditory cortex xref: FMA:242654 is_a: UBERON:0001393 ! implied link automatically realized ! auditory cortex relationship: in_left_side_of UBERON:0000955 intersection_of: UBERON:0001393 ! auditory cortex intersection_of: in_left_side_of UBERON:0000955 ! brain [Term] id: UBERON:0009898 name: left auditory cortex xref: FMA:242656 is_a: UBERON:0001393 ! implied link automatically realized ! auditory cortex relationship: in_right_side_of UBERON:0000955 intersection_of: UBERON:0001393 ! auditory cortex intersection_of: in_right_side_of UBERON:0000955 ! brain [Term] id: UBERON:0009899 name: pole of cerebral hemisphere def: "The anterior end of the hemisphere is named the frontal pole. The posterior end is named the occipital pole. The anterior end of the temporal lobe, the temporal pole." [Wikipedia:Poles_of_cerebral_hemispheres] is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0001869 ! cerebral hemisphere [Term] id: UBERON:0009906 name: root of optic nerve comment: TODO - check. See comments for optic tract. FMA also has medial root. synonym: "optic nerve root" EXACT [NIF_GrossAnatomy:birnlex_1328] synonym: "optic tract root" EXACT [FMA:84573] synonym: "root of optic tract" EXACT [FMA:84573] xref: FMA:84573 xref: NIF_GrossAnatomy:birnlex_1328 is_a: UBERON:0006843 {source="FMA"} ! root of cranial nerve relationship: continuous_with UBERON:0004904 intersection_of: UBERON:0002211 ! nerve root intersection_of: continuous_with UBERON:0004904 ! optic nerve [Term] id: UBERON:0009907 name: sensory root of trigeminal nerve synonym: "radix sensoria (nervus trigeminus [v])" EXACT [FMA:52611] xref: FMA:52611 xref: SCTID:280188009 is_a: UBERON:0004673 {source="FMA"} ! trigeminal nerve root [Term] id: UBERON:0009908 name: caudal root of abducens nerve synonym: "radix caudalis nervi abducentis" EXACT [ZFA:0000179] xref: TAO:0000179 xref: ZFA:0000179 is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0002786 ! abducens nerve fibers is_a: UBERON:0004733 ! implied link automatically realized ! segmental subdivision of hindbrain relationship: part_of UBERON:0001646 {source="ZFA"} ! abducens nerve relationship: part_of UBERON:0001896 {source="ZFA"} ! medulla oblongata [Term] id: UBERON:0009909 name: rostral root of abducens nerve xref: ZFA:0000665 is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0002786 ! abducens nerve fibers is_a: UBERON:0004733 ! implied link automatically realized ! segmental subdivision of hindbrain relationship: part_of UBERON:0001646 {source="ZFA"} ! abducens nerve relationship: part_of UBERON:0001896 {source="ZFA"} ! medulla oblongata [Term] id: UBERON:0009910 name: posterior lateral plate mesoderm synonym: "PLPM" EXACT [ZFA:0005042] xref: TAO:0005042 xref: ZFA:0005042 is_a: UBERON:0000926 {source="ZFA"} ! mesoderm is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure relationship: part_of UBERON:0003081 {source="ZFA"} ! lateral plate mesoderm [Term] id: UBERON:0009911 name: lobule xref: FMA:45737 xref: ncithesaurus:Lobule is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0009912 name: anatomical lobe xref: FMA:45728 is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0009913 name: renal lobe def: "the portion of a kidney consisting of a renal medullary pyramid and the renal cortex above it; human kidneys have multilobar (multipyramidal) architecture while mice and rats have unilobar (unipyramidal) kidneys" [MP:0011381] synonym: "kidney lobe" EXACT [MP:0011381] xref: FMA:17881 is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure is_a: UBERON:0009912 ! implied link automatically realized ! anatomical lobe relationship: part_of UBERON:0002113 intersection_of: UBERON:0009912 ! anatomical lobe intersection_of: part_of UBERON:0002113 ! kidney [Term] id: UBERON:0009914 name: renal lobule def: "the portion of a renal lobe consisting of nephrons grouped around a single medullary ray and draining into a single collecting duct; human kidneys have multilobular, multipapillary architecture while mice and rats have unilobular, unipapillary kidneys" [MP:0011382] synonym: "kidney lobule" EXACT [MP:0011382] xref: FMA:17670 is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure is_a: UBERON:0009911 ! implied link automatically realized ! lobule relationship: part_of UBERON:0002113 intersection_of: UBERON:0009911 ! lobule intersection_of: part_of UBERON:0002113 ! kidney relationship: part_of UBERON:0009913 {source="FMA"} ! renal lobe [Term] id: UBERON:0009916 name: wall of ureter synonym: "ureteral wall" EXACT [FMA:15888] xref: FMA:15888 xref: SCTID:279397004 is_a: UBERON:0000060 ! implied link automatically realized ! anatomical wall is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0000056 intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0000056 ! ureter [Term] id: UBERON:0009917 name: kidney corticomedullary boundary def: "the region demarcating the renal medulla from the surrounding cortex; end-stage renal failure may be associated with loss of the normal corticomedullary boundary" [MP:0011376] xref: NEW_MP:0011376 is_a: UBERON:0000015 ! implied link automatically realized ! anatomical boundary relationship: adjacent_to UBERON:0000362 relationship: adjacent_to UBERON:0001225 intersection_of: UBERON:0000015 ! anatomical boundary intersection_of: adjacent_to UBERON:0000362 ! renal medulla intersection_of: adjacent_to UBERON:0001225 ! cortex of kidney relationship: part_of UBERON:0002113 {source="MP"} ! kidney [Term] id: UBERON:0009918 name: retrotrapezoid nucleus def: "the loose collection of neurons that reside in the rostral medulla close to the medullary surface, ventral and immediately caudal of nVII, that are crucial for CO2 sensing in the brain" [MP:0011406] xref: NEW_MP:0011406 is_a: UBERON:0000125 {source="cjm"} ! neural nucleus is_a: UBERON:0007635 ! implied link automatically realized ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 {source="MP"} ! medulla oblongata [Term] id: UBERON:0009919 name: ureter smooth muscle def: "the smooth muscle tissue surrounding the epithelium of the ureter" [MP:0011426] synonym: "ureteral smooth muscle" EXACT [NEW_MP:0011426] synonym: "ureteral smooth muscle layer" EXACT [EMAPA:28844] xref: EMAPA:28844 is_a: UBERON:0001135 ! implied link automatically realized ! smooth muscle tissue is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0000056 intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0000056 ! ureter relationship: part_of UBERON:0006855 ! ureter muscle layer [Term] id: UBERON:0009920 name: optic neural crest xref: EHDAA:1122 xref: EHDAA2:0001315 is_a: UBERON:0007213 ! implied link automatically realized ! mesenchyme derived from head neural crest is_a: UBERON:0007530 {source="EHDAA2"} ! migrating mesenchyme population relationship: part_of UBERON:0007213 {source="EHDAA2"} ! mesenchyme derived from head neural crest [Term] id: UBERON:0009921 name: hypophyseal tube is_a: UBERON:0000025 ! tube [Term] id: UBERON:0009948 name: clavicular air sac xref: SCTID:2574004 is_a: UBERON:0009060 ! air sac [Term] id: UBERON:0009949 name: humeral diverticulum of clavicular air sac xref: SCTID:2574004 is_a: UBERON:0009060 ! air sac relationship: continuous_with UBERON:0009948 ! clavicular air sac [Term] id: UBERON:0009950 name: olfactory bulb plexiform layer comment: check if the NIF class is actually a grouping class synonym: "plexiform layer" BROAD [NIF_GrossAnatomy:nlx_anat_20090405] xref: NIF_GrossAnatomy:nlx_anat_20090405 is_a: UBERON:0004001 {source="NIF_GrossAnatomy"} ! olfactory bulb layer relationship: part_of UBERON:0002264 ! olfactory bulb [Term] id: UBERON:0009951 name: main olfactory bulb def: "The main olfactory bulb has a multi-layered cellular architecture. In order from surface to the center the layers are: Glomerular layer, External plexiform layer, Mitral cell layer, Internal plexiform layer, Granule cell layer[WP]." [Wikipedia:Olfactory_bulb#Main_olfactory_bulb] xref: ABA:MOB is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure relationship: part_of UBERON:0002264 {source="cjm"} ! olfactory bulb relationship: spatially_disjoint_from UBERON:0002266 {source="ABA"} ! anterior olfactory nucleus relationship: spatially_disjoint_from UBERON:0002590 {source="ABA"} ! prepyriform area relationship: spatially_disjoint_from UBERON:0002893 {source="ABA"} ! nucleus of lateral olfactory tract relationship: spatially_disjoint_from UBERON:0004069 {source="ABA"} ! accessory olfactory bulb [Term] id: UBERON:0009952 name: subgranular zone def: "a narrow layer of cells located between the granule cell layer and hilus of the dentate gyrus, where adult neurogenesis occurs. " [Wikipedia:Subgranular_zone] xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/99/Doublecortin_expression-2.png/600px-Doublecortin_expression-2.png is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon relationship: part_of UBERON:0001885 ! dentate gyrus of hippocampal formation [Term] id: UBERON:0009953 name: post-embryonic organism synonym: "post-natal organism" EXACT [UBERON:cjm] is_a: UBERON:0000468 ! implied link automatically realized ! multi-cellular organism relationship: existence_starts_with UBERON:0000092 intersection_of: UBERON:0000468 ! multi-cellular organism intersection_of: existence_starts_with UBERON:0000092 ! post-embryonic stage [Term] id: UBERON:0009954 name: vomeronasal system def: "a vertebrate nasal chemosensory system that is responsible for detecting intraspecific pheromonal cues as well as environmental odorants" [] comment: Editor note: check relationship to olfactory system. Evolution: The morphological components of the VNS are found only in tetrapods, but the genetic components of the system have been found in teleost fish, in addition to tetrapods. In tetrapods, the VNS was thought to be the olfactory system for detecting pheromones, while the main olfactory system detected general odorants (Scalia and Winans 1975). However, experimental evidence suggests that there is not such a clear functional distinction (Restrepo et al. 2004; Baxi, Dorries, and Eisthen 2006; Spehr et al. 2006; Kelliher 2007). Sea lampreys produce unique bile acids which act as pheromones both in migration and mate finding (Li, Sorensen, and Gallaher 1995; Li et al. 2002; Siefkes and Li 2004). However, bile acids in teleost fish are known to require components of the main olfactory signal transduction pathway (Hansen et al. 2003), and interruption of the VNS signal transduction pathway had no effect on bile acid olfactory response (Hansen et al. 2003)[Grus - EVOLUTION OF THE VOMERONASAL SYSTEM VIEWED THROUGH SYSTEM-SPECIFIC GENES] is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system is_a: UBERON:0001032 ! sensory system relationship: part_of UBERON:0005725 ! olfactory system [Term] id: UBERON:0009955 name: neurogenic placode def: "Cranial placode with neurogenic potential[cjm]. Neurogenic placodes are transient ectodermal thickenings that form at the border of the neural plate and epidermis and give rise to sensory neurons of the cranial ganglia[ZFA]. The neurogenic placodes give rise to parts of various nerves and ganglia, the olfactory organ, parietal eye, parts of the inner ear, and the lateral line. There are 2 major series of neurogenic placodes, the dorsolateral and ventrolateral or epibranchial[PMID]" [PMID:11523831, Wikipedia:Neurogenic_placodes, ZFA:0001309] synonym: "neurogenic placodes" EXACT PLURAL [ZFA:0001309] xref: TAO:0001309 xref: ZFA:0001309 is_a: UBERON:0002546 {source="cjm"} ! cranial placode [Term] id: UBERON:0009956 name: corpuscle of de Quatrefage def: "A specialised sensory organ located in the subepidermal connective tissue at the rostral end of late larval and adult amphioxus. They consist of between 1 and 4 nerve cells with axons, each with 2 cilia, surrounded by up to 7 sheath cells. The cilia extend into a protrusion of the basal lamina which surrounds each corpuscle. The axonal process contributes to the rostral nerve." [PMID:11523831] synonym: "organ of de Quatrefage" EXACT [] is_a: UBERON:0000020 ! sense organ [Term] id: UBERON:0009957 name: ciliated pit comment: Development: joins with Hatschek’s diverticulum to form Hatschek’s pit in the adult. Location: anterior to the mouth. synonym: "pre-oral pit" RELATED [] is_a: UBERON:0006846 ! groove [Term] id: UBERON:0009958 name: bladder lumen synonym: "bladder cavity" EXACT [FMA:15924] synonym: "lumen of urinary bladder" EXACT [FMA:15924] synonym: "urinary bladder lumen" EXACT [FMA:15924] xref: EHDAA2:0004058 xref: FMA:15924 is_a: UBERON:0002558 {source="FMA"} ! organ cavity relationship: develops_from UBERON:0009844 {source="EHDAA2"} ! urogenital sinus lumen relationship: part_of UBERON:0001255 {source="FMA"} ! urinary bladder [Term] id: UBERON:0009959 name: lumen of oropharynx synonym: "oropharyngeal cavity" EXACT [EHDAA2:0004556] synonym: "oropharynx lumen" EXACT [FMA:55095] xref: EHDAA2:0004556 xref: FMA:55095 is_a: UBERON:0000464 ! anatomical space relationship: develops_from UBERON:0006272 {source="EHDAA2"} ! oronasal cavity relationship: part_of UBERON:0001729 {source="FMA"} ! oropharynx [Term] id: UBERON:0009960 name: esophagus smooth muscle circular layer synonym: "esophagus smooth muscle circular layer" RELATED [MA:0001574] xref: FMA:67605 xref: MA:0001574 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0006660 ! muscle layer relationship: part_of UBERON:0002112 {source="MA"} ! smooth muscle of esophagus relationship: part_of UBERON:0003832 {source="FMA"} ! esophagus muscle [Term] id: UBERON:0009961 name: esophagus smooth muscle longitudinal layer synonym: "esophagus smooth muscle longitudinal layer" RELATED [MA:0001575] synonym: "longitudinal muscle layer of esophagus" EXACT [FMA:63573] xref: FMA:63573 xref: MA:0001575 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0006660 ! muscle layer relationship: part_of UBERON:0002112 {source="MA"} ! smooth muscle of esophagus relationship: part_of UBERON:0003832 {source="FMA"} ! esophagus muscle [Term] id: UBERON:0009962 name: excretory gland def: "A gland that discharges its secretion through a duct opening on an internal or external surface of the body, as a lacrimal gland." [Dorlands_Medical_Dictionary:MerckSource] comment: todo - child terms xref: BTO:0000431 is_a: UBERON:0002530 {source="BTO"} ! gland is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure relationship: part_of UBERON:0001008 ! excretory system [Term] id: UBERON:0009963 name: antennal gland def: "Excretory gland situated in the basal article of the antennal peduncle. It functions to rehulate ionic balance" [BTO:0000075, UBERON:cjm] comment: Editor note: consider also classifying this as a renal tubule - or separate terms for coiled/nephridial canal. Editor note: cede this term to Arthropod AO synonym: "green gland" EXACT [] xref: BTO:0000075 is_a: UBERON:0009962 {source="BTO"} ! excretory gland relationship: part_of UBERON:0000972 {source="BTO"} ! antenna [Term] id: UBERON:0009964 name: crustacean maxillary gland def: "Excretory organ in maxillary segment with duct opening on maxilla." [http://crustacea.nhm.org/glossary/define.html] comment: Taxon notes: consider generalizing to include millipedes, centipedes. Function: Two different excretory organs are found among crustaceans: the antennal gland and the maxillary gland. Both have the same basic structure: an end sac and a convoluted duct that may expand into a bladder before opening to the outside. In most adult crustaceans only one or the other gland functions. The functional gland may change during the life cycle. Terminology note: http://crustacea.nhm.org/glossary/define.html?termID=327 suggests green gland as the generic term and antennal as the decapoda term. Editor note: cede this term to Arthropod AO is_a: UBERON:0009962 {source="BTO"} ! excretory gland disjoint_from: UBERON:0001832 ! sublingual gland [Term] id: UBERON:0009965 name: coxal gland def: "a gland found in some arthropods, for collecting and excreting urine. The gland comprises an end sac (saccule), a long duct (labyrinth) and a terminal bladder (reservoir). There is generally only one pair (two in some spiders), and they open on the coxae of the walking legs[WP]." [Wikipedia:Coxal_gland] comment: Taxon notes: They are found in all arachnids (with the exception of some Acari), and in other chelicerates, such as horseshoe crabs. Homology: The coxal gland is thought to be homologous with the antennal gland of crustaceans. Editor note: cede this term to Arthropod AO xref: SPD:0000116 xref: TADS:0000080 is_a: UBERON:0009962 {source="BTO"} ! excretory gland relationship: homologous_to UBERON:0009963 ! antennal gland [Term] id: UBERON:0009966 name: internodal tract def: "Subdivision of conducting systemof heart which consists of the anterior, middle and posterior internodal tracts beneath the endocardium of interatrial septum and above the attachment of the septal leaflet of tricuspid valve." [FMA:9479] comment: evidence is sparse [http://www.gpnotebook.co.uk/simplepage.cfm?ID=-483065798] There is some functional evidence for the existence of specialized conducting pathways within the atria (termed internodal tracts), although this is controversial[http://www.cvphysiology.com/Arrhythmias/A003.htm]. Editor note: include 3 subtypes? synonym: "interatrial conduction tract" EXACT [] synonym: "internodal conduction tract" EXACT [] synonym: "internodal fasciculus" EXACT [FMA:9479] synonym: "internodal tract muscle tissue" EXACT [FMA:9479] xref: FMA:9479 is_a: UBERON:0002385 ! muscle tissue relationship: part_of UBERON:0002350 {source="FMA"} ! conducting system of heart [Term] id: UBERON:0009967 name: spleen venous sinus synonym: "sinus lienalis" EXACT [FMA:TA] synonym: "sinus splenicus" EXACT [FMA:TA] synonym: "splenic sinus" EXACT [FMA:62815] synonym: "venous sinus of red pulp of spleen" EXACT [FMA:62815] xref: FMA:62815 xref: MA:0000761 xref: ncithesaurus:Splenic_Sinus is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003497 ! implied link automatically realized ! abdomen blood vessel is_a: UBERON:0005911 ! implied link automatically realized ! endo-epithelium is_a: UBERON:0006615 {source="cjm"} ! venous sinus relationship: part_of UBERON:0001250 {source="MA"} ! red pulp of spleen [Term] id: UBERON:0009968 name: primitive superior sagittal sinus xref: EHDAA:9876 xref: EHDAA2:0001527 xref: EMAPA:18636 is_a: UBERON:0001638 {source="EHDAA2"} ! vein is_a: UBERON:0003499 ! implied link automatically realized ! brain blood vessel relationship: part_of UBERON:0005486 {source="EHDAA2"} ! venous dural sinus [Term] id: UBERON:0009969 name: stato-acoustic epithelium comment: Editor note: required by CL xref: FMA:64804 is_a: UBERON:0006934 {source="FMA"} ! sensory epithelium [Term] id: UBERON:0009970 name: epithelium of pancreatic duct comment: Editor note: in EHDAA2, the embryonic pancreatic ducts (dorsal, ventral) are classified as eithelial sacs, which would render them equivalent to this synonym: "pancreatic duct epithelium" EXACT [FMA:67681] synonym: "pancreatic ductal epithelium" EXACT [FMA:67681] xref: FMA:67681 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005911 ! implied link automatically realized ! endo-epithelium relationship: part_of UBERON:0007329 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0007329 ! pancreatic duct [Term] id: UBERON:0009971 name: principal gastric gland def: "one of the gastric glands that secretes the hydrochloric acid of the gastric juice[Stedman's]." [http://www.drugs.com/dict/acid-gland.html, MP:0003892] synonym: "acid gland" EXACT [http://www.drugs.com/dict/acid-gland.html] synonym: "gastric follicle" RELATED [MP:0003892] synonym: "gastric gland" BROAD [MP:0003892] synonym: "glandula gastrica propria" EXACT [FMA:14921] synonym: "main gastric gland" EXACT [FMA:14921] synonym: "oxyntic gland" EXACT [FMA:14921] synonym: "Wassman gland" RELATED [MP:0003892] xref: FMA:14921 is_a: UBERON:0000325 {source="FMA"} ! gastric gland is_a: UBERON:0003294 ! implied link automatically realized ! gland of foregut relationship: part_of UBERON:0004994 {source="FMA"} ! mucosa of fundus of stomach relationship: part_of UBERON:0004995 {source="FMA"} ! mucosa of body of stomach [Term] id: UBERON:0009972 name: ureteropelvic junction def: "the junction between the ureter and the renal pelvis of the kidney" [MP:0011487] synonym: "pelviureteric junction" EXACT [FMA:15898] xref: FMA:15898 is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure is_a: UBERON:0007651 ! implied link automatically realized ! anatomical junction relationship: adjacent_to UBERON:0000056 relationship: adjacent_to UBERON:0001224 intersection_of: UBERON:0007651 ! anatomical junction intersection_of: adjacent_to UBERON:0000056 ! ureter intersection_of: adjacent_to UBERON:0001224 ! renal pelvis relationship: part_of UBERON:0001008 {source="MP"} ! excretory system [Term] id: UBERON:0009973 name: ureterovesical junction def: "the valve-like structure found at the site of entry of the ureter into the urinary bladder, normally displays an oblique angulation through the detrusor to avoid reflux of urine up the ureters and the kidney" [MP:0011488] xref: FMA:15899 is_a: UBERON:0003978 ! valve is_a: UBERON:0006554 ! implied link automatically realized ! urinary system structure is_a: UBERON:0007651 ! implied link automatically realized ! anatomical junction relationship: adjacent_to UBERON:0000056 relationship: adjacent_to UBERON:0001255 intersection_of: UBERON:0007651 ! anatomical junction intersection_of: adjacent_to UBERON:0000056 ! ureter intersection_of: adjacent_to UBERON:0001255 ! urinary bladder relationship: part_of UBERON:0001008 {source="MP"} ! excretory system [Term] id: UBERON:0009974 name: lumen of Rathke's pouch synonym: "adenohypophysis invagination" NARROW [EHDAA2:0004139] synonym: "Rathkes pouch invagination" NARROW [EHDAA2:0004138] xref: EHDAA2:0004138 xref: EHDAA2:0004139 is_a: UBERON:0002553 ! implied link automatically realized ! anatomical cavity is_a: UBERON:0005082 ! implied link automatically realized ! tube lumen relationship: surrounded_by UBERON:0005356 intersection_of: UBERON:0002553 ! anatomical cavity intersection_of: surrounded_by UBERON:0005356 ! Rathke's pouch [Term] id: UBERON:0009975 name: remnant of lumen of Rathke's pouch is_a: UBERON:0002553 ! anatomical cavity relationship: adjacent_to UBERON:0002196 ! adenohypophysis relationship: develops_from UBERON:0009974 ! lumen of Rathke's pouch [Term] id: UBERON:0009976 name: hypothalamo-hypophyseal system def: "A neuroendocrine system of neurons, fiber tracts, endocrine tissue, and blood vessels which produces and releases pituitary hormones into the systemic circulation." [MESH:A.06.407.747.357, Wikipedia:Hypophyseal_portal_system] comment: Editor notes: todo - check the meaning of the FMA term. Function notes: One of the most important functions of the hypothalamus is to link the nervous system to the endocrine system via the pituitary gland (hypophysis). The hypothalamus is responsible for certain metabolic processes and other activities of the autonomic nervous system. It synthesizes and secretes certain neurohormones, often called hypothalamic-releasing hormones, and these in turn stimulate or inhibit the secretion of pituitary hormones. The hypothalamus controls body temperature, hunger, thirst, fatigue, sleep, and circadian cycles[WP] synonym: "hypophyseal portal system" EXACT [Wikipedia:Hypophyseal_portal_system] synonym: "hypothalamo hypophyseal system" RELATED [MESH:A.06.407.747.357] synonym: "hypothalamo-hypophyseal system" RELATED [MESH:A.06.407.747.357] synonym: "venae portales hypophysiales" EXACT [Wikipedia:Hypophyseal_portal_system] xref: FMA:70860 xref: MESH:A.06.407.747.357 is_a: UBERON:0001898 {source="MESH"} ! hypothalamus is_a: UBERON:0003714 ! neural tissue relationship: overlaps UBERON:0000007 ! pituitary gland relationship: overlaps UBERON:0002196 ! adenohypophysis relationship: part_of UBERON:0000949 ! endocrine system [Term] id: UBERON:0009977 name: natal tooth def: "Predeciduous teeth present at birth. They may be well formed and normal or may represent hornified epithelial structures without roots. They are found on the gingivae over the crest of the ridge and arise from accessory buds of the dental lamina ahead of the deciduous buds or from buds of the accessory dental lamina. (From Jablonski, Dictionary of Dentistry, 1992)" [MESH:A.14.254.860.700.500] synonym: "natal teeth" EXACT PLURAL [GAID:1267] synonym: "natal tooth" RELATED [GAID:1267] xref: GAID:1267 xref: MESH:A.14.254.860.700.500 is_a: UBERON:0007115 {source="GAID"} ! deciduous tooth [Term] id: UBERON:0009978 name: epicondyle def: "." [Wikipedia:Epicondyle] xref: FMA:75435 xref: SCTID:333209006 is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ [Term] id: UBERON:0009979 name: condyle def: "the round prominence at the end of a bone, most often part of a joint - an articulation with another bone[WP]." [Wikipedia:Condyle_(anatomy)] xref: SCTID:91737009 is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ [Term] id: UBERON:0009980 name: condyle of femur synonym: "condylus femoralis" EXACT [] synonym: "condylus femoris" EXACT [] synonym: "femoral condyle" EXACT [] synonym: "fibular condyle" RELATED [AAO:0000900] xref: AAO:0000900 is_a: UBERON:0005055 ! implied link automatically realized ! zone of long bone is_a: UBERON:0009979 ! implied link automatically realized ! condyle relationship: part_of UBERON:0004406 intersection_of: UBERON:0009979 ! condyle intersection_of: part_of UBERON:0004406 ! distal epiphysis of femur [Term] id: UBERON:0009984 name: medial condyle of femur def: "The medial condyle is one of the two projections on the lower extremity of femur. The medial condyle is larger than the lateral (outer) condyle due to more weight bearing caused by the center of gravity being medial to the knee. On the posterior surface of the condyle the linea aspera (a ridge running down the posterior shaft of the femur) turns into the medial supracondylar ridge. The outermost protrusion on the medial surface of the medial condyle is referred to as the \"medial epicondyle\" and can be palpated by running fingers medially from the patella with the knee in flexion." [Wikipedia:Medial_condyle_of_femur] synonym: "c. medialis femoris" RELATED [Wikipedia:Medial_condyle_of_femur] synonym: "medial condyle of the femur" RELATED [Wikipedia:Medial_condyle_of_femur] xref: FMA:32858 xref: SCTID:182056007 is_a: UBERON:0009980 ! condyle of femur relationship: part_of UBERON:0004406 {source="FMA"} ! distal epiphysis of femur [Term] id: UBERON:0009985 name: lateral condyle of femur def: "The lateral condyle is one of the two projections on the lower extremity of femur. It is the more prominent and is the broader both in its antero-posterior and transverse diameters" [Wikipedia:Lateral_condyle_of_femur] synonym: "c. lateralis femoris" RELATED [Wikipedia:Lateral_condyle_of_femur] synonym: "lateral condyle of the femur" RELATED [Wikipedia:Lateral_condyle_of_femur] xref: FMA:32859 xref: SCTID:182057003 is_a: UBERON:0009980 ! condyle of femur relationship: part_of UBERON:0004406 {source="FMA"} ! distal epiphysis of femur [Term] id: UBERON:0009986 name: lateral epicondyle of femur def: "The lateral epicondyle of the femur, smaller and less prominent than the medial epicondyle, gives attachment to the fibular collateral ligament of the knee-joint. Directly below it is a small depression from which a smooth well-marked groove curves obliquely upward and backward to the posterior extremity of the condyle." [Wikipedia:Lateral_epicondyle_of_the_femur] synonym: "epicondylus lateralis (femur)" EXACT [FMA:32867] synonym: "lateral femoral epicondyle" RELATED [Wikipedia:Lateral_epicondyle_of_the_femur] xref: FMA:32867 xref: SCTID:209275007 is_a: UBERON:0005055 ! implied link automatically realized ! zone of long bone is_a: UBERON:0009978 {source="FMA"} ! epicondyle relationship: part_of UBERON:0004406 {source="FMA"} ! distal epiphysis of femur relationship: part_of UBERON:0009985 {source="FMA"} ! lateral condyle of femur [Term] id: UBERON:0009987 name: medial epicondyle of femur def: "The medial epicondyle of the femur is a bony protrusion located on the medial side of the bone's distal end. Located above the medial condyle, it bears an elevation, the adductor tubercle, which serves for the attachment of the superficial part, or \"tendinous insertion\", of the adductor magnus. This tendinous part here forms an intermuscular septum which forms the medial separation between the thigh's flexors and extensors. Behind it, and proximally to the medial condyle is a rough impression which gives origin to the medial head of the Gastrocnemius." [Wikipedia:Medial_epicondyle_of_the_femur] synonym: "epicondylus medialis (femur)" EXACT [FMA:32864] synonym: "medial femoral epicondyle" RELATED [Wikipedia:Medial_epicondyle_of_the_femur] xref: FMA:32864 xref: SCTID:209172001 is_a: UBERON:0005055 ! implied link automatically realized ! zone of long bone is_a: UBERON:0009978 {source="FMA"} ! epicondyle relationship: part_of UBERON:0004406 {source="FMA"} ! distal epiphysis of femur relationship: part_of UBERON:0009984 {source="FMA"} ! medial condyle of femur [Term] id: UBERON:0009988 name: condyle of humerus def: "the distal end of the humerus, including the trochlea, capitulum and the olecranon, coronoid and radial fossae" [http://www.medilexicon.com/medicaldictionary.php?t=19715] synonym: "condylus humeri" EXACT [] xref: SCTID:361778001 is_a: UBERON:0005055 ! implied link automatically realized ! zone of long bone is_a: UBERON:0009979 ! implied link automatically realized ! condyle relationship: part_of UBERON:0004404 intersection_of: UBERON:0009979 ! condyle intersection_of: part_of UBERON:0004404 ! distal epiphysis of humerus [Term] id: UBERON:0009989 name: condyle of tibia def: "One of the lateral or medial condyles of the tibia." [Wikipedia:Tibial_condyle] synonym: "tibial condyle" EXACT [AAO:0000899] xref: AAO:0000899 xref: SCTID:182062002 is_a: UBERON:0005055 ! implied link automatically realized ! zone of long bone is_a: UBERON:0009979 ! implied link automatically realized ! condyle relationship: part_of UBERON:0008772 intersection_of: UBERON:0009979 ! condyle intersection_of: part_of UBERON:0008772 ! proximal epiphysis of tibia [Term] id: UBERON:0009990 name: medial condyle of tibia def: "The medial condyle is the medial portion of the upper extremity of tibia. It is the site of insertion for the Semimembranosus muscle[WP]." [Wikipedia:Medial_condyle_of_tibia] synonym: "condylus medialis (tibia)" EXACT [FMA:35445] synonym: "medial condyle of the tibia" RELATED [Wikipedia:Medial_condyle_of_tibia] synonym: "medial tibial condyle" RELATED [Wikipedia:Medial_condyle_of_tibia] xref: FMA:35445 xref: SCTID:182066004 is_a: UBERON:0009989 ! condyle of tibia [Term] id: UBERON:0009991 name: lateral condyle of tibia def: "The lateral condyle is the lateral portion of the upper extremity of tibia. It serves as the insertion for the Biceps femoris muscle[WP]." [Wikipedia:Lateral_condyle_of_tibia] synonym: "condylus lateralis (tibia)" EXACT [FMA:35448] xref: FMA:35448 xref: SCTID:182067008 is_a: UBERON:0009989 ! condyle of tibia [Typedef] id: adjacent_to name: adjacent_to def: "x adjacent_to y iff: x and y share a boundary" [] [Typedef] id: anterior_to name: anterior_to def: "x anterior_to y iff x is further along the antero-posterior axis than y, towards the head. An antero-posterior axis is an axis that bisects an organism from head end to opposite end of body or tail: bearer" [BSPO:cjm] is_transitive: true created_by: cjm creation_date: 2009-07-31T02:15:46Z [Typedef] id: attached_to name: attached_to comment: FMA:85990 [Typedef] id: bearer_of name: bearer of namespace: BFO xref: BFO:0000053 [Typedef] id: branch_of name: branch_of comment: Source: FMA. Editor note: we need to check if FMA branch_of implies part_of. the relation we intend to use here should - for example, see vestibulocochlear nerve xref: FMA:85994 is_a: part_of ! part_of [Typedef] id: capable_of name: capable_of property_value: IAO:0000412 http://purl.obolibrary.org/obo/cl.owl [Typedef] id: coincides_with name: coincides_with def: "Relation between occurrents, shares start and end boundaries." [Allen:starts, UBERON:cjm] synonym: "coincides_with" EXACT [] is_a: finishes ! finishes is_a: starts ! starts intersection_of: finishes ! finishes intersection_of: starts ! starts [Typedef] id: composed_primarily_of name: composed_primarily_of def: "x composed_primarily_of y iff: more than half of the mass of x is made from parts of y" [] is_a: has_part ! has part [Typedef] id: connects name: connects [Typedef] id: contains name: contains [Typedef] id: continuous_with name: continuous_with comment: sourced from FMA xref: FMA:85972 [Typedef] id: deep_to name: deep_to def: "Further away from the surface of the organism. Thus, the muscular layer is deep to the skin, but superficial to the intestines." [BSPO:cjm] xref: BSPO:0000107 is_transitive: true [Typedef] id: develops_from name: develops_from xref: RO:0002202 is_transitive: true holds_over_chain: part_of develops_from transitive_over: part_of ! part_of [Typedef] id: develops_from_part_of name: develops_from_part_of is_transitive: true holds_over_chain: develops_from part_of [Typedef] id: develops_in name: develops_in def: "x develops_in y if x is located in x whilst x is developing." [] [Typedef] id: develops_into name: develops_into inverse_of: develops_from ! develops_from [Typedef] id: directly_preceded_by name: directly_preceded_by is_a: preceded_by ! preceded_by [Typedef] id: distal_to name: distal_to def: "x distal_to y iff x is further along the proximo-distal axis than y, towards the appendage tip. A proximo-distal axis extends from tip of an appendage (distal) to where it joins the body (proximal)." [BSPO:cjm] xref: BSPO:0000097 [Typedef] id: dorsal_to name: dorsal_to def: "x dorsal_to y iff x is further along the dorso-ventral axis than y, towards the back. A dorso-ventral axis is an axis that bisects an organism from back (e.g. spinal column) to front (e.g. belly)." [BSPO:cjm] xref: BSPO:0000098 is_transitive: true inverse_of: ventral_to ! ventral_to [Typedef] id: dubious_for_taxon name: dubious_for_taxon def: "S dubious_for_taxon T if it is probably the case that no instances of S can be found in any instance of T." [UBERON:cjm] comment: this relation lacks a strong logical interpretation, but can be used in place of never_in_taxon where it is desirable to state that the definition of the class is too strict for the taxon under consideration, but placing a never_in_taxon link would result in a chain of inconsistencies that will take time to resolve. Example: metencephalon in teleost is_class_level: true is_metadata_tag: true [Typedef] id: encloses name: encloses def: "x encloses y iff the convex hull formed by x contains all or the majority of y." [UBERON:cjm] [Typedef] id: existence_ends_at name: existence_ends_at def: "c existence_ends_at e iff c exists_at e and not ( exists e2 : c exists_at e2 and e before e2)." [UBERON:cjm] [Typedef] id: existence_ends_before name: existence_ends_before def: "Relation between continuant c and occurrent s, such that every instance of c ceases to exist before s." [UBERON:cjm] [Typedef] id: existence_ends_during name: existence_ends_during def: "Relation between continuant c and occurrent s, such that every instance of c ceases to exist during some s, if it does not die prematurely." [UBERON:cjm] comment: todo - add full axioms to bfo synonym: "ceases_to_exist_during" EXACT [] xref: BFO:0000069 is_a: existence_starts_or_ends_during ! implied link automatically realized ! existence_starts_or_ends_during transitive_over: part_of ! part_of [Typedef] id: existence_ends_with name: existence_ends_with def: "Relation between continuant and occurrent, such that c ceases to exist at the end of p." [UBERON:cjm] [Typedef] id: existence_starts_after name: existence_starts_after def: "Relation between continuant c and occurrent s, such that every instance of c comes into existing after some s has completed." [UBERON:cjm] comment: disjoint_from existence_starts_during (but this cannot be expressed in OWL2) holds_over_chain: existence_starts_during preceded_by [Typedef] id: existence_starts_and_ends_during name: existence_starts_and_ends_during is_a: existence_ends_during ! existence_ends_during is_a: existence_starts_during ! existence_starts_during intersection_of: existence_ends_during ! existence_ends_during intersection_of: existence_starts_during ! existence_starts_during [Typedef] id: existence_starts_at name: existence_starts_at def: "c existence_starts_at e iff c exists_at e and not ( exists e2 : c exists_at e2 and e2 before e)" [UBERON:cjm] [Typedef] id: existence_starts_during name: existence_starts_during def: "Relation between continuant c and occurrent s, such that every instance of c comes into existing during some s." [UBERON:cjm] synonym: "begins_to_exist_during" EXACT [] xref: BFO:0000068 is_a: existence_starts_or_ends_during ! implied link automatically realized ! existence_starts_or_ends_during transitive_over: part_of ! part_of [Typedef] id: existence_starts_or_ends_during name: existence_starts_or_ends_during union_of: existence_ends_during ! existence_ends_during union_of: existence_starts_during ! existence_starts_during [Typedef] id: existence_starts_with name: existence_starts_with def: "Relation between continuant and occurrent, such that c comes into existence at the start of p." [UBERON:cjm] holds_over_chain: existence_starts_at start_of [Typedef] id: exists_during name: exists_during [Typedef] id: finishes name: finishes def: "Relation between occurrents, shares an end boundary with." [Allen:starts, UBERON:cjm, ZFS:finishes] xref: ncithesaurus:Finish is_a: part_of ! part_of [Typedef] id: has_end name: has_end [Typedef] id: has_function_in name: has_function_in [Typedef] id: has_fused_element name: has_fused_element def: "x has_fused_element y iff: there exists some z : x has_part z, z homologous_to y, and y is a distinct element, the boundary between x and z is largely fiat" [] comment: A single bone in one species may correspond to the fusion of two or more bones found as distinct elements in another. For example, tibiofibula has_fused_element tibia. A has_fused_element B does not imply that A has_part some B, rather than A has_part some B', where B' is not a subtype of B (because B is a distinct element but B' is a regional part) but has some evolutionary relationship to B. is_class_level: true is_metadata_tag: true [Typedef] id: has_part name: has part xref: BFO:0000051 is_transitive: true inverse_of: part_of ! part_of [Typedef] id: has_quality name: has_quality def: "c has_quality q iff: q inheres_in c and q is a quality." [] [Typedef] id: has_start name: has_start [Typedef] id: homologous_to name: homologous_to is_metadata_tag: true [Typedef] id: immediately_deep_to name: immediately_deep_to def: "This relation holds when both the deep_to and ajdacent_to relationship similarly hold." [BSPO:cjm] xref: BSPO:0001107 is_a: adjacent_to ! adjacent_to is_a: deep_to ! deep_to [Typedef] id: in_distal_side_of name: in_distal_side_of def: "X distal_side_of Y <=> if Y is subdivided into distal and proximal portions, X is part_of the distal portion." [BSPO:PATO_mtg_2009] xref: BSPO:0000125 inverse_of: in_proximal_side_of ! in_proximal_side_of [Typedef] id: in_left_side_of name: in_left_side_of def: "X left_side_of Y <=> if Y is subdivided into left and right portions, X is part_of the left portion." [BSPO:PATO_mtg_2009] xref: BSPO:0000120 is_a: part_of ! part_of inverse_of: in_right_side_of ! in_right_side_of [Typedef] id: in_proximal_side_of name: in_proximal_side_of def: "X proximal_side_of Y <=> if Y is subdivided into distal and proximal portions, X is part_of the proximal portion." [BSPO:PATO_mtg_2009] xref: BSPO:0000124 [Typedef] id: in_right_side_of name: in_right_side_of def: "X right_side_of Y <=> if Y is subdivided into left and right portions, X is part_of the right portion." [BSPO:PATO_mtg_2009] xref: BSPO:0000121 is_a: part_of ! part_of [Typedef] id: induced_by name: induced_by def: "t1 induced_by t2 if there is a process of organ induction (GO:0001759) with t1 and t2 as interacting participants. t2 causes t1 to change its fate from a precursor tissue type T to T', where T' develops_from T." [GO:0001759] comment: sources for induced_by relationships in Uberon: Developmental Biology, Gilbert, 8th edition, figure 6.5(F) [Typedef] id: location_of name: location_of created_by: cjm creation_date: 2009-07-30T10:22:21Z [Typedef] id: never_in_taxon name: never_in_taxon def: "S never_in_taxon T iff: S SubClassOf in_taxon only not T" [PMID:20973947] xref: RO:0002161 is_class_level: true [Typedef] id: only_in_taxon name: only_in_taxon def: "S only_in_taxon T iff: S SubClassOf in_taxon only T" [PMID:20973947] xref: RO:0002160 [Typedef] id: output_of name: output_of [Typedef] id: overlaps name: overlaps def: "A overlaps B if they share some part in common." [] xref: RO:0002131 expand_expression_to: "BFO_0000051 some (BFO_0000050 some ?Y)" [] [Typedef] id: part_of name: part_of comment: note that all the uses of part_of in this ontology are for proper part of xref: BFO:0000050 is_transitive: true [Typedef] id: participates_in name: participates in namespace: BFO xref: BFO:0000056 [Typedef] id: preceded_by name: preceded_by comment: disjoint_from part_of, but this cannot be expressed in OWL2 xref: BFO:0000062 is_transitive: true [Typedef] id: proximal_to name: proximal_to def: "x proximal_to y iff x is closer to the point of attachment with the body than y." [BSPO:cjm] xref: BSPO:0000100 [Typedef] id: realized_by name: realized by namespace: BFO xref: BFO:0000054 [Typedef] id: replaces name: replaces def: "x replaces y iff: x exists after y, x is located in the same place in which y was, and y no longer occupies that place." [] [Typedef] id: secreted_by name: secreted_by [Typedef] id: secretes name: secretes [Typedef] id: site_of name: site_of def: "C site_of P iff exists species S such that P occurs_in C for all members of S. Example: bursa of Fabricius site_of B-cell differentiation." [GOC:cjm] [Typedef] id: spatially_disjoint_from name: spatially_disjoint_from def: "A is spatially_disjoint_from B if they have no parts in common." [SO:cjm] synonym: "non_overlapping_with" EXACT [] synonym: "shares_no_parts_with" EXACT [] expand_expression_to: "BFO_0000051 exactly 0 (BFO_0000050 some ?Y)" [] is_class_level: true is_metadata_tag: true [Typedef] id: start_of name: start_of [Typedef] id: starts name: starts def: "Relation between occurrents, shares a start boundary with." [Allen:starts, UBERON:cjm, ZFS:starts] holds_over_chain: has_start start_of is_a: part_of ! part_of [Typedef] id: supplies name: supplies def: "relation between an artery and the structure is supplies with blood." [] comment: source: FMA synonym: "arterial supply of" EXACT [FMA:86003] xref: FMA:86003 [Typedef] id: surrounded_by name: surrounded_by def: "x surrounded_by y iff: x is adjacent to y and for every region r adjacent to x, r overlaps y" [UBERON:cjm] [Typedef] id: surrounds name: surrounds def: "inverse of surrounded_by" [UBERON:cjm] inverse_of: surrounded_by ! surrounded_by [Typedef] id: tributary_of name: tributary_of comment: taken from the FMA [Typedef] id: ventral_to name: ventral_to def: "x ventral_to y iff x is further along the dorso-ventral axis than y, towards the front. A dorso-ventral axis is an axis that bisects an organism from back (e.g. spinal column) to front (e.g. belly)." [BSPO:cjm] xref: BSPO:0000102 is_transitive: true