format-version: 1.2 data-version: releases/2019-08-05 date: 02:08:2019 12:24 saved-by: Ceri auto-generated-by: OBO-Edit 2.3-beta5 subsetdef: cell_slim "cell_slim" synonymtypedef: PLURAL "PLURAL" default-namespace: zebrafish_anatomical_ontology treat-xrefs-as-genus-differentia: CARO part_of NCBITaxon:7955 treat-xrefs-as-genus-differentia: CL part_of NCBITaxon:7955 treat-xrefs-as-genus-differentia: TAO part_of NCBITaxon:7955 treat-xrefs-as-genus-differentia: VSAO part_of NCBITaxon:7955 remark: SVN version: $Revision: 1.100$ ontology: zfa [Term] id: ZFA:0000000 name: Brachet's cleft namespace: zebrafish_anatomy def: "The visible division between epiblast and hypoblast in the gastrula." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-576] xref: TAO:0000000 is_a: ZFA:0001105 ! embryonic structure relationship: end ZFS:0000024 ! Segmentation:5-9 somites relationship: start ZFS:0000020 ! Gastrula:75%-epiboly [Term] id: ZFA:0000001 name: Kupffer's vesicle namespace: zebrafish_anatomy def: "Small but distinctive epithelial sac containing fluid, located midventrally posterior to the yolk cell or its extension, and transiently present during most of the segmentation period. Kupffer's vesicle has been compared to the mouse embryonic node." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-050328-4, ZFIN:ZDB-PUB-961014-576] synonym: "ciliated organ of asymmetry" EXACT [ZFIN:ZDB-PUB-050221-4] xref: TAO:0000001 is_a: ZFA:0001105 ! embryonic structure relationship: develops_from ZFA:0000023 ! forerunner cell group relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0000077 ! tail bud relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0000003 name: adaxial cell namespace: zebrafish_anatomy def: "Muscle precursor cell that is adjacent to the notochord and part of the presomitic mesoderm." [PMID:8951054] subset: cell_slim synonym: "adaxial cells" EXACT PLURAL [] xref: CL:0007016 xref: TAO:0000003 is_a: ZFA:0009000 ! cell relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0000279 ! segmental plate relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0000004 name: anterior axial hypoblast namespace: zebrafish_anatomy def: "Anterior portion of the axial hypoblast." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] synonym: "pre-polster" EXACT [ZFIN:ZDB-PUB-051019-5] xref: TAO:0000004 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000022 ! Gastrula:Bud relationship: part_of ZFA:0001378 ! axial hypoblast relationship: start ZFS:0000020 ! Gastrula:75%-epiboly [Term] id: ZFA:0000005 name: artery namespace: zebrafish_anatomy def: "Blood vessels that carry blood away from the heart." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "arterial system" RELATED [] xref: TAO:0000005 is_a: ZFA:0005314 ! blood vessel relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001079 ! blood vasculature relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000006 name: ball namespace: zebrafish_anatomy def: "The anterior round region of the yolk cell present after the yolk extension forms during the segmentation period." [ZFIN:ZDB-PUB-961014-576] synonym: "yolk ball" EXACT [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000006 is_a: ZFA:0001308 ! organism subdivision relationship: end ZFS:0000036 ! Larval:Day 4 relationship: part_of ZFA:0000084 ! yolk relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000007 name: blood namespace: zebrafish_anatomy def: "A complex mixture of cells suspended in a liquid matrix that delivers nutrients to cells and removes wastes." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0000007 is_a: ZFA:0001487 ! portion of organism substance relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005023 ! hematopoietic system relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000008 name: brain namespace: zebrafish_anatomy alt_id: ZFA:0001661 def: "Cavitated compound organ which is comprised of gray and white matter and surrounds the cerebral ventricular system." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "brain structure" RELATED [] xref: TAO:0000008 is_a: ZFA:0001490 ! cavitated compound organ relationship: develops_from ZFA:0001135 ! neural tube relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000012 ! central nervous system relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000009 name: cardiac ventricle namespace: zebrafish_anatomy def: "Cavitated compound organ that receives blood flow from the atrium and delivers blood to the body via the aorta. Valves are present to direct flow. There are only two chambers present in the fish heart." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-020122-4] synonym: "ventricle" EXACT [] xref: TAO:0000009 is_a: ZFA:0001490 ! cavitated compound organ relationship: develops_from ZFA:0001719 ! presumptive cardiac ventricle heart tube relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000114 ! heart relationship: start ZFS:0000032 ! Pharyngula:High-pec [Term] id: ZFA:0000010 name: cardiovascular system namespace: zebrafish_anatomy def: "Anatomical system that functions in circulation and has as its parts the heart and vasculature. The lymphatic system is considered part of the cardiovascular system." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0000010 is_a: ZFA:0001439 ! anatomical system relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000011 name: caudal artery namespace: zebrafish_anatomy def: "Extension of the dorsal aorta in the post-vent region." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-576] synonym: "CA" EXACT [] xref: TAO:0000011 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005037 ! post-vent vasculature relationship: part_of ZFA:0005295 ! axial blood vessel relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000012 name: central nervous system namespace: zebrafish_anatomy def: "The brain and spinal cord." [ZFIN:ZDB-PUB-961014-576] synonym: "cns" EXACT [] xref: TAO:0000012 is_a: ZFA:0000396 ! nervous system relationship: develops_from ZFA:0000063 ! presumptive neural plate relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0000013 name: cranial ganglion namespace: zebrafish_anatomy def: "Ganglion which is located in the head." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "cranial ganglia" EXACT PLURAL [] synonym: "presumptive cranial ganglia" RELATED [] xref: TAO:0000013 is_a: ZFA:0000190 ! ganglion relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0000014 name: dorsal aorta namespace: zebrafish_anatomy def: "Principal unpaired, median artery of the trunk, leading from the paired roots (radices) of the dorsal aorta to the caudal artery." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-576] synonym: "DA" EXACT [] synonym: "dorsal aortic root" EXACT [] xref: TAO:0000014 is_a: ZFA:0000005 ! artery relationship: develops_from ZFA:0005077 ! vascular cord relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005024 ! trunk vasculature relationship: part_of ZFA:0005295 ! axial blood vessel relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000015 name: anatomical set namespace: zebrafish_anatomy is_obsolete: true consider: ZFA:0001512 [Term] id: ZFA:0000016 name: ectoderm namespace: zebrafish_anatomy def: "The outer layer of the embryo derived from the epiblast. The definitive ectoderm will give rise to such tissues as epidermis, the central nervous system, neural crest, and sensory placode." [http://zfin.org/zf_info/zfbook/stages/gast.html] xref: TAO:0000016 is_a: ZFA:0001122 ! primary germ layer relationship: develops_from ZFA:0000018 ! epiblast relationship: end ZFS:0000038 ! Larval:Day 6 relationship: start ZFS:0000020 ! Gastrula:75%-epiboly [Term] id: ZFA:0000017 name: endoderm namespace: zebrafish_anatomy xref: TAO:0000017 is_a: ZFA:0001122 ! primary germ layer relationship: develops_from ZFA:0000416 ! presumptive endoderm relationship: end ZFS:0000035 ! Larval:Protruding-mouth relationship: start ZFS:0000020 ! Gastrula:75%-epiboly [Term] id: ZFA:0000018 name: epiblast namespace: zebrafish_anatomy def: "The outer of the two layers of the blastoderm that form during gastrulation, corresponding to primitive ectoderm during gastrulation and to the definitive ectoderm after gastrulation." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000018 is_a: ZFA:0001105 ! embryonic structure relationship: develops_from ZFA:0000711 ! DEL relationship: end ZFS:0000022 ! Gastrula:Bud relationship: part_of ZFA:0000111 ! germ ring relationship: start ZFS:0000018 ! Gastrula:Germ-ring [Term] id: ZFA:0000019 name: epiphysis namespace: zebrafish_anatomy def: "A circumscribed swelling, includes the pineal primordium that appears late in the segmentation period in the dorsal midline of the diencephalon. It is located directly rostral to the posterior commissure and dorsal to the habenular commissure." [GOC:cvs, GOC:mh, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-1268, ZFIN:ZDB-PUB-961014-576] synonym: "corpus pineale" EXACT [] synonym: "pineal gland" EXACT [] synonym: "pineal organ" EXACT [] xref: TAO:0000019 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001127 ! visual system relationship: part_of ZFA:0001158 ! endocrine system relationship: part_of ZFA:0001359 ! pineal complex relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000020 name: extraembryonic structure namespace: zebrafish_anatomy def: "Anatomical structure that is contiguous with the embryo and is comprised of portions of tissue or cells that will not contribute to the embryo." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "extraembryonic structures" EXACT PLURAL [] xref: CARO:0000042 xref: TAO:0000020 is_a: ZFA:0000037 ! anatomical structure relationship: end ZFS:0000032 ! Pharyngula:High-pec relationship: start ZFS:0000001 ! Zygote:1-cell [Term] id: ZFA:0000022 name: floor plate namespace: zebrafish_anatomy def: "Multi-tissue structure that is the ventral-most aspect of the developing neural tube. The floor plate is a specialized glial structure with secretory function that spans the rostral-caudal axis from the midbrain to the tail regions. The floor plate is one of first structures that differentiate in the developing nervous system." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-980205-16] comment: The floor plate cells are a row of cells along the a-p axis ~3 cells wide that make up the ventral floor of the early spinal cord. Floor plate cells are prominent rectangular cells with a triangular cross section with one cell in the middle that straddles the ventral midline and usually one cell lateral to the middle cell on both sides. 14hpf. synonym: "floorplate" EXACT [] synonym: "fp" EXACT [] xref: TAO:0000022 is_a: ZFA:0001488 ! multi-tissue structure relationship: develops_from ZFA:0001218 ! presumptive floor plate relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000012 ! central nervous system relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000023 name: forerunner cell group namespace: zebrafish_anatomy def: "A group of cells that migrate at the leading edge of shield during gastrulation but do not involute. At the end of gastrulation, forerunner cells migrate deep into the embryo and organize to form Kupffer's vesicle." [ZFIN:ZDB-PUB-970107-2] synonym: "DFCs" EXACT PLURAL [] synonym: "dorsal forerunner cells" EXACT PLURAL [] synonym: "forerunner cells" EXACT PLURAL [] xref: TAO:0000023 is_a: ZFA:0001105 ! embryonic structure relationship: develops_from ZFA:0001126 ! noninvoluting endocytic marginal cell cluster relationship: end ZFS:0000023 ! Segmentation:1-4 somites relationship: start ZFS:0000017 ! Gastrula:50%-epiboly [Term] id: ZFA:0000024 name: retinal ganglion cell layer namespace: zebrafish_anatomy def: "Layer of the retina that contains the ganglion cell bodies." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "ganglion cell layer" EXACT [] xref: TAO:0000024 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000046 ! retinal neural layer relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0000026 name: hatching gland namespace: zebrafish_anatomy def: "A transversely oriented set of cells located deep to the EVL on the pericardial membrane, especially prominent during pharyngula period because of the brightly refractile cytoplasmic granules (containing hatching enzymes) of the principal cells of the gland." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-576] synonym: "hgg" EXACT [] xref: TAO:0000026 is_a: ZFA:0001105 ! embryonic structure relationship: develops_from ZFA:0000058 ! polster relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000027 name: paired fin skeleton namespace: zebrafish_anatomy def: "Skeletal system of paired fins." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "appendicular skeleton" EXACT [] xref: TAO:0000027 is_a: ZFA:0000434 ! skeletal system relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005596 ! paired fin relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000028 name: heart primordium namespace: zebrafish_anatomy def: "Bilateral groups of cells consisting of three rows: one row of endocardial precursors medially and two rows of myocardial precursors laterally. The two populations fuse at the midline between 21 and 26 somites to form the heart rudiment or cone." [ZFIN:ZDB-PUB-010219-2] synonym: "cardiac field" EXACT [] synonym: "heart primordia" EXACT PLURAL [] xref: TAO:0000028 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0001065 ! lateral mesoderm relationship: end ZFS:0000027 ! Segmentation:20-25 somites relationship: part_of ZFA:0000010 ! cardiovascular system relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000029 name: hindbrain namespace: zebrafish_anatomy def: "The most posterior of the three principal regions of the brain. In mammals and birds the hindbrain is divided into a rostral metencephalon and a caudal myelencephalon. In zebrafish, with the exception of the cerebellum, the ventral remainder of the metencephalon can be separated only arbitrarily from the more caudal myelencephalic portion of the medulla oblongata and thus these are not distinguished here. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "rhombencephalon" EXACT [] xref: TAO:0000029 is_a: ZFA:0001488 ! multi-tissue structure relationship: develops_from ZFA:0007043 ! hindbrain neural tube relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000008 ! brain relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000030 name: macula utricle namespace: zebrafish_anatomy def: "Portion of tissue that is a patch of thickened, pseudostratified epithelium in the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. The macula utricle senses linear acceleration and gravity. The macula utricle covers most of the floor of the utricle." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-010912-7] synonym: "maculae utricle" EXACT PLURAL [] xref: TAO:0000030 is_a: ZFA:0000386 ! macula relationship: develops_from ZFA:0000168 ! anterior macula relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000700 ! utricle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000031 name: hypochord namespace: zebrafish_anatomy def: "Portion of tissue that arises from the arise from the lateral edges of the shield and is located immediately ventral to the notochord. The hypochord is thought to play a role in positioning the dorsal aorta. Unlike in frogs and axolotl, the hypochord does not appear to be endodermally derived." [ZFIN:ZDB-PUB-000621-3, ZFIN:ZDB-PUB-060807-3] xref: TAO:0000031 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0001217 ! presumptive hypochord relationship: end ZFS:0000035 ! Larval:Protruding-mouth relationship: part_of ZFA:0000017 ! endoderm relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000032 name: hypothalamus namespace: zebrafish_anatomy def: "Multi-tissue structure which is the largest portion of diencephalon and is ventrally located. The hypothalamus arises near the end of the segmentation period and the embryonic hypothalamic region gives rise to the neurohypophysis and other diencephalic nuclei." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000032 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000101 ! diencephalon relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000033 name: intermediate cell mass of mesoderm namespace: zebrafish_anatomy synonym: "ICM" EXACT [] synonym: "intermediate cell mass of Oellacher" EXACT [] synonym: "posterior intermediate cell mass" EXACT [] xref: TAO:0000033 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0000121 ! lateral plate mesoderm relationship: develops_from ZFA:0001201 ! ventral lateral mesoderm relationship: end ZFS:0000033 ! Hatching:Long-pec relationship: part_of ZFA:0005023 ! hematopoietic system relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000034 name: lateral line system namespace: zebrafish_anatomy def: "A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "ll" EXACT [] xref: TAO:0000034 is_a: ZFA:0000282 ! sensory system relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000142 ! peripheral nervous system relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000035 name: lens namespace: zebrafish_anatomy def: "Portion of tissue that is a transparent, biconvex structure located in the eye through which light is focused." [GOC:mh, http://encyclopedia.thefreedictionary.com/Lens+(anatomy, ORCiD:0000-0001-9114-8737] synonym: "lenses" EXACT PLURAL [] xref: TAO:0000035 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0001679 ! solid lens vesicle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005566 ! anterior segment eye relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0000036 name: liver and biliary system namespace: zebrafish_anatomy def: "System responsible for the production and movement of bile." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0000036 is_a: ZFA:0001439 ! anatomical system relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000037 name: anatomical structure namespace: zebrafish_anatomy def: "Zebrafish anatomical entity that has inherent 3D shape and is generated by coordinated expression of the organism's own genome." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "anatomical structures" EXACT PLURAL [] xref: CARO:0000003 xref: TAO:0000037 is_a: ZFA:0100000 ! zebrafish anatomical entity relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000001 ! Zygote:1-cell [Term] id: ZFA:0000038 name: margin namespace: zebrafish_anatomy def: "Embryonic structure, the edge of the blastoderm." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] xref: TAO:0000038 is_a: ZFA:0001105 ! embryonic structure relationship: end ZFS:0000022 ! Gastrula:Bud relationship: start ZFS:0000016 ! Blastula:30%-epiboly [Term] id: ZFA:0000039 name: median axial vein namespace: zebrafish_anatomy xref: TAO:0000039 is_a: ZFA:0000082 ! vein relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000040 name: median fin fold namespace: zebrafish_anatomy def: "Surface structure that will develop into one of the median fins. Extends from dorsal surface of fish, caudal to the 8th somite, to the ventral surface ending at the caudal side of the vent." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "median fin" RELATED [] xref: TAO:0000040 is_a: ZFA:0000292 ! surface structure relationship: end ZFS:0000037 ! Larval:Day 5 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000041 name: mesoderm namespace: zebrafish_anatomy xref: TAO:0000041 is_a: ZFA:0001122 ! primary germ layer relationship: develops_from ZFA:0001377 ! presumptive mesoderm relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000020 ! Gastrula:75%-epiboly [Term] id: ZFA:0000042 name: midbrain hindbrain boundary namespace: zebrafish_anatomy def: "The boundary between the mesencephalon and the rhombencephalon." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "isthmus" EXACT [] synonym: "mhb" EXACT [] synonym: "midbrain-hindbrain boundary" EXACT [] xref: TAO:0000042 is_a: ZFA:0001689 ! anatomical line relationship: develops_from ZFA:0007047 ! midbrain hindbrain boundary neural tube relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000008 ! brain relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000043 name: muscle pioneer somite 1 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 1." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "muscle pioneers somite 1" EXACT PLURAL [] xref: TAO:0000043 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000072 ! somite 1 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000044 name: myotome somite 14 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] subset: cell_slim xref: TAO:0000044 is_a: ZFA:0001056 ! myotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000726 ! somite 14 relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000045 name: neural crest namespace: zebrafish_anatomy def: "A cell population arising from the dorsolateral aspect of the central nervous system primordium during the segmentation period, and later migrating along stereotyped pathways to give rise to a diverse and well-defined set of cell types including pigment cells, peripheral neurons and glia, and head cartilage." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000045 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0007082 ! neural plate border relationship: end ZFS:0000031 ! Pharyngula:Prim-25 relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0000046 name: retinal neural layer namespace: zebrafish_anatomy def: "Portion of retina composed of all the neural tissues in the retina." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "neural retina" EXACT [] synonym: "neuroretina" EXACT [] xref: TAO:0000046 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0001071 ! presumptive neural retina relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000152 ! retina relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0000047 name: peripheral olfactory organ namespace: zebrafish_anatomy def: "Organ that is the specialized structure of the face that contains olfactory neurons. The peripheral olfactory organ is paired." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "nasal sac" EXACT [] synonym: "nose" RELATED [] xref: TAO:0000047 is_a: ZFA:0001490 ! cavitated compound organ relationship: develops_from ZFA:0000048 ! olfactory placode relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001149 ! olfactory system relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0000048 name: olfactory placode namespace: zebrafish_anatomy def: "Neurogenic placode that gives rise to the olfactory neurons that which convey odor information to the CNS." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "olfactory placodes" EXACT PLURAL [] xref: TAO:0000048 is_a: ZFA:0001309 ! neurogenic placode relationship: develops_from ZFA:0007062 ! olfactory field relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0001149 ! olfactory system relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000049 name: optic recess namespace: zebrafish_anatomy def: "Lumen of optic stalk." [ZFIN:ZDB-PUB-101008-1] synonym: "optic recesses" EXACT PLURAL [] xref: TAO:0000049 is_a: ZFA:0001643 ! anatomical space relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000079 ! telencephalon relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000050 name: optic vesicle namespace: zebrafish_anatomy def: "Portion of tissue that is comprised of neuroepithelium which has pinched off from the anterior neural keel and will form the optic cup." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "optic vesicles" EXACT PLURAL [] xref: TAO:0000050 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0000570 ! optic primordium relationship: end ZFS:0000027 ! Segmentation:20-25 somites relationship: part_of ZFA:0001678 ! immature eye relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000051 name: otic vesicle namespace: zebrafish_anatomy def: "Epithelial sac present beside the fifth rhombomere; forms the semicircular canals dorsally and the otolith organs ventrally, and houses the acoustico-vestibular sensory epithelia (maculae) of hair cells. (Also see Anatomical Atlas entry for ear by T. Whitfield.)" [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-576] synonym: "otic capsule" RELATED [] synonym: "otocyst" EXACT [] synonym: "ov" EXACT [] xref: TAO:0000051 is_a: ZFA:0001105 ! embryonic structure relationship: develops_from ZFA:0000138 ! otic placode relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000052 name: dorsal actinotrichium namespace: zebrafish_anatomy def: "Actinotrichium which is part of the dorsal fin fold." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "dorsal actinotrichia" EXACT PLURAL [] xref: TAO:0000052 is_a: ZFA:0000089 ! fin fold actinotrichium relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000102 ! dorsal fin fold relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000053 name: presumptive segmental plate namespace: zebrafish_anatomy def: "Embryonic structure part of the mesoderm fated to become segmental plate." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] synonym: "presumptive segmental plates" EXACT PLURAL [] xref: TAO:0000053 is_a: ZFA:0001105 ! embryonic structure relationship: end ZFS:0000022 ! Gastrula:Bud relationship: part_of ZFA:0000041 ! mesoderm relationship: start ZFS:0000020 ! Gastrula:75%-epiboly [Term] id: ZFA:0000054 name: pericardium namespace: zebrafish_anatomy def: "Serous membrane that surrounds the heart." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "pericardial sac" EXACT [] xref: TAO:0000054 is_a: ZFA:0005425 ! serous membrane relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0007115 ! pericardial region relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000056 name: pharynx namespace: zebrafish_anatomy def: "Swollen region of the anterior foregut, posterior to the mouth and anterior to the liver; its walls form the jaws and gills." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000056 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000339 ! digestive system relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000058 name: polster namespace: zebrafish_anatomy def: "The hatching gland rudiment at the time it underlies the forebrain during the early segmentation period." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-576] synonym: "pillow" EXACT [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000058 is_a: ZFA:0001105 ! embryonic structure relationship: develops_from ZFA:0000004 ! anterior axial hypoblast relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0000060 ! prechordal plate relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0000059 name: postoptic commissure namespace: zebrafish_anatomy synonym: "POC" EXACT [] synonym: "post optic commissure" EXACT [] synonym: "post-optic commissure" EXACT [] xref: TAO:0000059 is_a: ZFA:0000338 ! diencephalic white matter relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000060 name: prechordal plate namespace: zebrafish_anatomy def: "Axial hypoblast located anterior to the chorda mesoderm; the polster is its most anterior region." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000060 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0001204 ! axial mesoderm relationship: start ZFS:0000020 ! Gastrula:75%-epiboly [Term] id: ZFA:0000062 name: presumptive forebrain namespace: zebrafish_anatomy def: "Embryonic structure that gives rise to the forebrain." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "presumptive prosencephalon" EXACT [] xref: TAO:0000062 is_a: ZFA:0001105 ! embryonic structure relationship: end ZFS:0000020 ! Gastrula:75%-epiboly relationship: part_of ZFA:0000146 ! presumptive brain relationship: part_of ZFA:0007014 ! anterior presumptive neural plate relationship: start ZFS:0000019 ! Gastrula:Shield [Term] id: ZFA:0000063 name: presumptive neural plate namespace: zebrafish_anatomy alt_id: ZFA:0000061 def: "Region of the gastrula which gives rise to the neural plate." [GOC:mh, GOC:ymb, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-9900-7880] synonym: "neurectoderm" RELATED [] synonym: "presumptive central nervous system" EXACT [] synonym: "prospective neuroectoderm" EXACT [] synonym: "prospective vegetal ectoderm" EXACT [] xref: TAO:0000063 is_a: ZFA:0001116 ! presumptive structure relationship: end ZFS:0000021 ! Gastrula:90%-epiboly relationship: start ZFS:0000014 ! Blastula:Sphere [Term] id: ZFA:0000064 name: presumptive retinal pigmented epithelium namespace: zebrafish_anatomy def: "Portion of tissue that is the outer layer of the optic cup and will become the retinal pigmented epithelium." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "outer layer optic cup" EXACT [] synonym: "presumptive pigmented epithelia" EXACT PLURAL [] xref: TAO:0000064 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0001202 ! optic cup relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000066 name: proctodeum namespace: zebrafish_anatomy def: "An inward fold on the surface of the embryonic ectoderm that develops into part of the anal passage." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "anus" RELATED [] xref: TAO:0000066 is_a: ZFA:0000292 ! surface structure relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0000112 ! gut relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000067 name: pronephric mesoderm namespace: zebrafish_anatomy def: "Intermediate mesoderm that is located beneath the anterior somites and gives rise to the pronephros and pronephric duct." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-000606-4] synonym: "pronephric primordium" EXACT [ZFIN:ZDB-PUB-000606-4] xref: TAO:0000067 is_a: ZFA:0000041 ! mesoderm relationship: end ZFS:0000024 ! Segmentation:5-9 somites relationship: part_of ZFA:0001206 ! intermediate mesoderm relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0000068 name: proneural cluster namespace: zebrafish_anatomy def: "Cluster of cells in the neural plate that have the potential to become neuroblast." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-990921-1] synonym: "proneural clusters" EXACT PLURAL [] xref: TAO:0000068 is_a: ZFA:0001105 ! embryonic structure relationship: end ZFS:0000024 ! Segmentation:5-9 somites relationship: part_of ZFA:0000132 ! neural plate relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0000069 name: rhombomere 6 namespace: zebrafish_anatomy def: "Hindbrain segment or neuromere." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-576] synonym: "r6" EXACT [] xref: TAO:0000069 is_a: ZFA:0001064 ! rhombomere relationship: develops_from ZFA:0001210 ! presumptive rhombomere 6 relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000070 name: sensory axons peripheral namespace: zebrafish_anatomy comment: Consider post-composing term ZFA:0009053 sensory neuron with GO:0030424 axon xref: TAO:0000070 is_obsolete: true [Term] id: ZFA:0000071 name: shield namespace: zebrafish_anatomy def: "Embryonic structure that is a local accumulation of cells along the germ ring. The shield marks the dorsal side of the embryo." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-576] synonym: "dorsal organizer" EXACT [] synonym: "organizer" EXACT [] synonym: "Spemann Mangold organizer" EXACT [] synonym: "Spemann's organizer" EXACT [] xref: TAO:0000071 is_a: ZFA:0001105 ! embryonic structure relationship: end ZFS:0000019 ! Gastrula:Shield relationship: part_of ZFA:0000111 ! germ ring relationship: start ZFS:0000019 ! Gastrula:Shield [Term] id: ZFA:0000072 name: somite 1 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576] xref: TAO:0000072 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0000073 name: somite 5 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576] xref: TAO:0000073 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000074 name: somite 26 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576] xref: TAO:0000074 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000075 name: spinal cord namespace: zebrafish_anatomy alt_id: ZFA:0001664 synonym: "medulla spinalis" EXACT [ZFIN:ZDB-PUB-961014-1280] synonym: "spinal cord structure" RELATED [] xref: TAO:0000075 is_a: ZFA:0001490 ! cavitated compound organ relationship: develops_from ZFA:0007042 ! spinal cord neural tube relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000012 ! central nervous system relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000076 name: swim bladder namespace: zebrafish_anatomy def: "The swim bladder is a double-chambered organ located in the coelom and used to maintain buoyancy and may function as an acoustic resonator. The zebrafish does not appear to have a gas gland, but it is not yet clear if there are gas producing cells distributed more widely." [ZFIN:ZDB-PUB-060306-11] synonym: "gas bladder" EXACT [] xref: TAO:0000076 is_a: ZFA:0001490 ! cavitated compound organ relationship: develops_from ZFA:0005335 ! swim bladder bud relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0007116 ! pleuroperitoneal region relationship: start ZFS:0000034 ! Hatching:Pec-fin [Term] id: ZFA:0000077 name: tail bud namespace: zebrafish_anatomy synonym: "tail bud mesenchyme " RELATED [] synonym: "tailbud" EXACT [] xref: TAO:0000077 is_a: ZFA:0001105 ! embryonic structure relationship: develops_from ZFA:0000038 ! margin relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0000078 name: ventral actinotrichium namespace: zebrafish_anatomy def: "Actinotrichium which is part of the ventral fin fold." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "ventral actinotrichia" EXACT PLURAL [] xref: TAO:0000078 is_a: ZFA:0000089 ! fin fold actinotrichium relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001069 ! ventral fin fold relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000079 name: telencephalon namespace: zebrafish_anatomy def: "The anterior and dorsal forebrain neuromere. In ray-finned fishes and most pronounced in teleosts the roof plate of the embryonic telencephalon extends laterally with the effect that the paired alar plates forming the hemispheric walls roll out lateroventrally in a process called eversion. This is unlike the development in other vertebrate groups. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] xref: TAO:0000079 is_a: ZFA:0001488 ! multi-tissue structure relationship: develops_from ZFA:0000571 ! presumptive telencephalon relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000109 ! forebrain relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000080 name: trigeminal neural crest namespace: zebrafish_anatomy def: "Cranial neural crest which gives rise to the trigeminal ganglion." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0000080 is_a: ZFA:0001194 ! cranial neural crest relationship: end ZFS:0000028 ! Segmentation:26+ somites relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0000081 name: trunk mesenchyme namespace: zebrafish_anatomy xref: TAO:0000081 is_a: ZFA:0000393 ! mesenchyme relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0000082 name: vein namespace: zebrafish_anatomy def: "Vessels that carry blood to the heart." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "venous system" RELATED [] xref: TAO:0000082 is_a: ZFA:0005314 ! blood vessel relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001079 ! blood vasculature relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000083 name: ventral mesoderm namespace: zebrafish_anatomy xref: TAO:0000083 is_a: ZFA:0000041 ! mesoderm relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: start ZFS:0000020 ! Gastrula:75%-epiboly [Term] id: ZFA:0000084 name: yolk namespace: zebrafish_anatomy alt_id: ZFA:0009197 def: "Giant syncytial uncleaved cell containing nutrient store for embryonic development in the form of semicrystalline phospholipoprotein and contained within yolk granules." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-576] subset: cell_slim synonym: "yolk cell" EXACT [] xref: CL:0000428 xref: TAO:0000084 is_a: ZFA:0009000 ! cell relationship: end ZFS:0000037 ! Larval:Day 5 relationship: start ZFS:0000001 ! Zygote:1-cell [Term] id: ZFA:0000085 name: apical ectodermal ridge pectoral fin bud namespace: zebrafish_anatomy alt_id: ZFA:0000736 def: "Apical ectodermal ridge that is part of the pectoral fin bud." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "AER pectoral fin" EXACT [] synonym: "apical ectodermal ridge pectoral fin" EXACT [] synonym: "apical ectodermal ridge pectoral fin buds" EXACT PLURAL [] synonym: "apical ectodermal ridge pectoral fins" EXACT [] synonym: "apical fold pectoral fin" EXACT [] xref: TAO:0000085 xref: TAO:0000736 is_a: ZFA:0001702 ! apical ectodermal ridge relationship: end ZFS:0000032 ! Pharyngula:High-pec relationship: part_of ZFA:0000141 ! pectoral fin bud relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0000086 name: EVL namespace: zebrafish_anatomy def: "Outermost monolayer of cells surrounding the embryo that become very flattened in the blastula and give rise to the periderm. Sometimes used synonymously with periderm." [ZFIN:ZDB-PUB-961014-576] synonym: "enveloping layer" EXACT [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000086 is_a: ZFA:0001105 ! embryonic structure relationship: develops_from ZFA:0001484 ! superficial blastomere relationship: end ZFS:0000021 ! Gastrula:90%-epiboly relationship: part_of ZFA:0001176 ! blastoderm relationship: start ZFS:0000016 ! Blastula:30%-epiboly [Term] id: ZFA:0000088 name: yolk syncytial layer namespace: zebrafish_anatomy def: "Peripheral layer of the yolk cell including nuclei and non-yolky cytoplasm." [ZFIN:ZDB-PUB-961014-576] synonym: "periblast" EXACT [ZFIN:ZDB-PUB-961014-576] synonym: "yolk sac" RELATED [] synonym: "YSL" EXACT [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000088 is_a: ZFA:0001105 ! embryonic structure relationship: develops_from ZFA:0000084 ! yolk relationship: develops_from ZFA:0000541 ! marginal blastomere relationship: end ZFS:0000037 ! Larval:Day 5 relationship: start ZFS:0000011 ! Blastula:1k-cell [Term] id: ZFA:0000089 name: fin fold actinotrichium namespace: zebrafish_anatomy def: "Portion of tissue which is a slender, horny, flexible, unsegmented fibril, which strengthens the embryonic fin fold. Actinotrichia are translucent, exhibit birefringence (double refraction) and are composed of the scleroprotein elastoidine." [http://www.briancoad.com/Dictionary/Complete%20Dictionary.htm] synonym: "fin fold actinotrichia" EXACT PLURAL [] synonym: "median fin fold actinotrichium" EXACT [] xref: TAO:0000089 is_a: ZFA:0005435 ! actinotrichium relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000040 ! median fin fold relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000090 name: apical ectodermal ridge dorsal fin namespace: zebrafish_anatomy def: "Apical ectodermal ridge that is part of the dorsal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0000090 is_a: ZFA:0001702 ! apical ectodermal ridge relationship: end ZFS:0000035 ! Larval:Protruding-mouth relationship: part_of ZFA:0001173 ! dorsal fin relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0000091 name: axial chorda mesoderm namespace: zebrafish_anatomy alt_id: ZFA:0001219 def: "Notochord rudiment." [ZFIN:ZDB-PUB-961014-576] synonym: "chorda mesoderm" EXACT [] synonym: "chordamesoderm" EXACT [] synonym: "presumptive notochord" EXACT [] xref: TAO:0000091 xref: TAO:0001219 is_a: ZFA:0001116 ! presumptive structure relationship: end ZFS:0000022 ! Gastrula:Bud relationship: part_of ZFA:0001204 ! axial mesoderm relationship: start ZFS:0000020 ! Gastrula:75%-epiboly [Term] id: ZFA:0000092 name: axis namespace: zebrafish_anatomy def: "Organism subdivision running along the rostral-caudal axis of the early embryo." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] synonym: "midline" EXACT [] xref: TAO:0000092 is_a: ZFA:0001308 ! organism subdivision relationship: end ZFS:0000024 ! Segmentation:5-9 somites relationship: start ZFS:0000017 ! Gastrula:50%-epiboly [Term] id: ZFA:0000093 name: blastomere namespace: zebrafish_anatomy def: "Cell that arises during cleavage and is partially cleaved, and located at the blastodisc margin prior to collectively forming the yolk syncytial layer (YSL) in the midblastula." [ZFIN:ZDB-PUB-961014-576] subset: cell_slim synonym: "blastomeres" EXACT PLURAL [] xref: TAO:0000093 is_a: ZFA:0009000 ! cell relationship: end ZFS:0000015 ! Blastula:Dome relationship: part_of ZFA:0001175 ! blastodisc relationship: start ZFS:0000001 ! Zygote:1-cell [Term] id: ZFA:0000094 name: blood island namespace: zebrafish_anatomy def: "Nests of developing blood cells arising late in the segmentation period from the intermediate mass, and located in the anterior-ventral tail, just posterior to the yolk extension." [ZFIN:ZDB-PUB-961014-576] synonym: "blood islands" EXACT PLURAL [] synonym: "caudal hematopoietic tissue" RELATED [] synonym: "posterior blood island" RELATED [] synonym: "posterior ICM" EXACT [] xref: TAO:0000094 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0000033 ! intermediate cell mass of mesoderm relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000095 name: pharyngeal arch 3-7 skeleton namespace: zebrafish_anatomy def: "Skeletal and cartilaginous elements of the gill arches; the last five of the set of seven pharyngeal arches; the numbering system can be confusing; generally branchial arch #1 is the first gill arch, or the third pharyngeal arch, but some authors do not follow this convention." [ZFIN:ZDB-PUB-961014-576] synonym: "branchial arch skeleton" EXACT [] synonym: "gill arches 1-5 skeleton" EXACT [] xref: TAO:0000095 is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001216 ! splanchnocranium relationship: part_of ZFA:0001613 ! pharyngeal arch 3-7 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000096 name: cardinal system namespace: zebrafish_anatomy def: "Blood vasculature comprised of the cardinal veins." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0000096 is_a: ZFA:0001079 ! blood vasculature relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000097 name: carotid artery namespace: zebrafish_anatomy def: "Artery originating at the junction of the first two aortic arches and supplying the anterior brain." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000097 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000098 name: proliferative region namespace: zebrafish_anatomy def: "Anatomical cluster which consists of rapidly dividing cells." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "cell cycle" RELATED [] synonym: "cell division" RELATED [] synonym: "proliferation" RELATED [] xref: TAO:0000098 is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000012 ! Blastula:High [Term] id: ZFA:0000099 name: brain vasculature namespace: zebrafish_anatomy def: "Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the brain." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0000099 is_a: ZFA:0001267 ! cranial vasculature relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000008 ! brain relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000100 name: cerebellum namespace: zebrafish_anatomy def: "Brain structure derived from the anterior hindbrain, and perhaps including posterior midbrain. The cerebellum plays a role in somatic motor function, the control of muscle tone, and balance. In zebrafish, with the exception of the cerebellum, the ventral remainder of the metencephalon can be separated only arbitrarily from the more caudal myelencephalic portion of the medulla oblongata and thus these are not distinguished here." [ISBN:3764351209] xref: TAO:0000100 is_a: ZFA:0001488 ! multi-tissue structure relationship: develops_from ZFA:0001442 ! upper rhombic lip relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000029 ! hindbrain relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000101 name: diencephalon namespace: zebrafish_anatomy def: "The more posterior and ventral of two forebrain neuromeres, the other being the telencephalon; major derivatives are the eye cups, the brain pretectal region, the thalamus, hypothalamus, and epithalamus (including the habenula and epiphysis)." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000101 is_a: ZFA:0001488 ! multi-tissue structure relationship: develops_from ZFA:0000574 ! presumptive diencephalon relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000109 ! forebrain relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000102 name: dorsal fin fold namespace: zebrafish_anatomy def: "Region of the median fin fold that develops into the dorsal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0000102 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000037 ! Larval:Day 5 relationship: part_of ZFA:0000040 ! median fin fold relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000103 name: embryo namespace: zebrafish_anatomy is_obsolete: true consider: ZFS:0000002 consider: ZFS:0000003 consider: ZFS:0000004 consider: ZFS:0000005 consider: ZFS:0000006 consider: ZFS:0000007 consider: ZFS:0000008 consider: ZFS:0000009 consider: ZFS:0000010 consider: ZFS:0000011 consider: ZFS:0000012 consider: ZFS:0000013 consider: ZFS:0000014 consider: ZFS:0000015 consider: ZFS:0000016 consider: ZFS:0000017 consider: ZFS:0000018 consider: ZFS:0000019 consider: ZFS:0000020 consider: ZFS:0000021 consider: ZFS:0000022 consider: ZFS:0000023 consider: ZFS:0000024 consider: ZFS:0000025 consider: ZFS:0000026 consider: ZFS:0000027 consider: ZFS:0000028 consider: ZFS:0000029 consider: ZFS:0000030 consider: ZFS:0000031 consider: ZFS:0000032 [Term] id: ZFA:0000104 name: lateral cells namespace: zebrafish_anatomy is_obsolete: true [Term] id: ZFA:0000105 name: epidermis namespace: zebrafish_anatomy def: "A cellular, multilayered epithelium derived from the ectoderm. Zebrafish epidermis consists only of living cells unlike terrestrial vertebrates in which dead, keratinized cells are present." [ZFIN:ZDB-PUB-040726-12] xref: TAO:0000105 is_a: ZFA:0001486 ! epithelium relationship: develops_from ZFA:0000016 ! ectoderm relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000368 ! integument relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000106 name: extension namespace: zebrafish_anatomy def: "The posterior elongated region of the yolk cell that forms during the segmentation period." [ZFIN:ZDB-PUB-961014-576] synonym: "yolk extension" EXACT [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000106 is_a: ZFA:0001308 ! organism subdivision relationship: end ZFS:0000036 ! Larval:Day 4 relationship: part_of ZFA:0000084 ! yolk relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000107 name: eye namespace: zebrafish_anatomy def: "Cavitated compound organ that consists of the neural retina, lens, cornea and iris and is the sensory apparatus of the visual system." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "eyes" EXACT PLURAL [] xref: TAO:0000107 is_a: ZFA:0001490 ! cavitated compound organ relationship: develops_from ZFA:0001678 ! immature eye relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001114 ! head relationship: part_of ZFA:0001127 ! visual system relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000108 name: fin namespace: zebrafish_anatomy def: "Surface structure involved in locomotion." [TAO:WD] synonym: "fins" EXACT PLURAL [] xref: TAO:0000108 is_a: ZFA:0000292 ! surface structure relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000109 name: forebrain namespace: zebrafish_anatomy def: "The most anterior region the brain including both the telencephalon and diencephalon." [ZFIN:ZDB-PUB-961014-576] synonym: "prosencephalon" EXACT [] xref: TAO:0000109 is_a: ZFA:0001488 ! multi-tissue structure relationship: develops_from ZFA:0007041 ! forebrain neural tube relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000008 ! brain relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000110 name: fourth ventricle namespace: zebrafish_anatomy def: "Fluid-filled brain cavity." [ZFIN:ZDB-PUB-961014-576] synonym: "4th ventricle" EXACT [] synonym: "hindbrain ventricle" EXACT [] synonym: "rhombencephalic ventricle" EXACT [] synonym: "rhombencephalic vesicle" EXACT [] synonym: "ventricle IV" EXACT [] synonym: "ventriculus rhombencephali" EXACT [ZFIN:ZDB-PUB-961014-1280] xref: TAO:0000110 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000029 ! hindbrain relationship: part_of ZFA:0001261 ! ventricular system relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000111 name: germ ring namespace: zebrafish_anatomy def: "Embryonic structure that forms as a thickened annulus at the blastoderm rim. The germ ring is thickened because it is the involuting margin of the blastoderm." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576] xref: TAO:0000111 is_a: ZFA:0001105 ! embryonic structure relationship: develops_from ZFA:0000038 ! margin relationship: end ZFS:0000022 ! Gastrula:Bud relationship: start ZFS:0000018 ! Gastrula:Germ-ring [Term] id: ZFA:0000112 name: gut namespace: zebrafish_anatomy def: "The alimentary or digestive tract, and associated organs." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "alimentary canal" EXACT [] synonym: "enteric tract" EXACT [] synonym: "gut tube" EXACT [] xref: TAO:0000112 is_a: ZFA:0001512 ! anatomical group relationship: develops_from ZFA:0000017 ! endoderm relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000339 ! digestive system relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000113 name: head mesenchyme namespace: zebrafish_anatomy def: "Mesoderm that will give rise, along with cranial neural crest cells, to connective tissue, bone and musculature in the head." [http://www.Biology-Text.com] xref: TAO:0000113 is_a: ZFA:0000393 ! mesenchyme relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0000114 name: heart namespace: zebrafish_anatomy def: "Blood pumping organ composed of four components: sinus venosus, atrium, cardiac ventricle and bulbus arteriosus." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0000114 is_a: ZFA:0001490 ! cavitated compound organ relationship: develops_from ZFA:0000360 ! heart tube relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000010 ! cardiovascular system relationship: part_of ZFA:0007115 ! pericardial region relationship: start ZFS:0000032 ! Pharyngula:High-pec [Term] id: ZFA:0000115 name: heart rudiment namespace: zebrafish_anatomy def: "The migrating myocardial precursors of the heart rudiment form a cone like structure between 19.5 hpf and 22 hpf, and eventually telescope out into the primitive heart tube at 24hpf." [ZFIN:ZDB-PUB-010219-2] synonym: "heart cone" EXACT [] synonym: "rudimentary heart" EXACT [] xref: TAO:0000115 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0000028 ! heart primordium relationship: end ZFS:0000028 ! Segmentation:26+ somites relationship: part_of ZFA:0000010 ! cardiovascular system relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000116 name: macula lagena namespace: zebrafish_anatomy def: "Portion of tissue that is a patch of thickened, pseudostratified epithelium in the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. The macula lagena develops from the posterior macula. In juveniles the macula lagena lies in a vertical plane covering most of the medial wall of the lagena." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-010912-7, ZFIN:ZDB-PUB-020403-4] synonym: "maculae lagena" EXACT PLURAL [] xref: TAO:0000116 is_a: ZFA:0000386 ! macula relationship: develops_from ZFA:0000558 ! posterior macula relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000374 ! lagena relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000117 name: hypoblast namespace: zebrafish_anatomy def: "The inner of the two layers of the blastoderm that forms during gastrulation and give rise to the definitive mesoderm and endoderm." [ZFIN:ZDB-PUB-961014-576] synonym: "mesendoderm" EXACT [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000117 is_a: ZFA:0001105 ! embryonic structure relationship: develops_from ZFA:0000711 ! DEL relationship: end ZFS:0000022 ! Gastrula:Bud relationship: part_of ZFA:0000111 ! germ ring relationship: start ZFS:0000018 ! Gastrula:Germ-ring [Term] id: ZFA:0000118 name: hypophysis namespace: zebrafish_anatomy def: "A compound organ which is an endocrine gland located ventral to the diencephalon and derived from mixed neuroectodermal and non-neuroectodermal origin." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "pituitary" EXACT [] xref: TAO:0000118 is_a: ZFA:0000496 ! compound organ relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000101 ! diencephalon relationship: part_of ZFA:0001158 ! endocrine system relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000119 name: retinal inner nuclear layer namespace: zebrafish_anatomy def: "Retinal layer that contains the interneurons, the horizontal, bipolar and amacrine cells." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-970602-3] synonym: "inner nuclear layer" EXACT PLURAL [] synonym: "intermediate cell layer" EXACT [] xref: TAO:0000119 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000046 ! retinal neural layer relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0000120 name: lateral line ganglion namespace: zebrafish_anatomy def: "Ganglion that develops from a cranial ectodermal placode and contains sensory neurons that innervate a lateral line." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "lateral line ganglia" EXACT PLURAL [] synonym: "llg" EXACT [] xref: TAO:0000120 is_a: ZFA:0000013 ! cranial ganglion relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000034 ! lateral line system relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000121 name: lateral plate mesoderm namespace: zebrafish_anatomy synonym: "lateral plate" EXACT [] synonym: "LPM" EXACT [] xref: TAO:0000121 is_a: ZFA:0000041 ! mesoderm relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0000122 name: lens placode namespace: zebrafish_anatomy def: "Ectodermal primordium of the lens of the eye." [ZFIN:ZDB-PUB-961014-576] synonym: "lens placodes" EXACT PLURAL [] xref: TAO:0000122 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000026 ! Segmentation:14-19 somites relationship: part_of ZFA:0000016 ! ectoderm relationship: part_of ZFA:0001678 ! immature eye relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000123 name: liver namespace: zebrafish_anatomy def: "Solid compound organ with three lobes that has many functions including bile production, blood detoxification, the production of critical plasma proteins and clotting factors, complement proteins and the storage of many substances, such as lipids, amino acids, iron, and glycogen. Female fish produce vitellogenins in the liver." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-030115-26, ZFIN:ZDB-PUB-090407-7, ZFIN:ZDB-PUB-100730-19] xref: TAO:0000123 is_a: ZFA:0001491 ! solid compound organ relationship: develops_from ZFA:0000124 ! liver primordium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000036 ! liver and biliary system relationship: part_of ZFA:0000339 ! digestive system relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0000124 name: liver primordium namespace: zebrafish_anatomy def: "Embryonic primordium that develops into the liver." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "liver bud" EXACT [] xref: TAO:0000124 is_a: ZFA:0001105 ! embryonic structure relationship: develops_from ZFA:0005738 ! intestinal bulb primordium relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0000036 ! liver and biliary system relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000125 name: mandibular lateral line neuromast namespace: zebrafish_anatomy def: "Neuromast that is part of the mandibular lateral line. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576] synonym: "neuromast mandibular" EXACT [] synonym: "neuromasts mandibular" EXACT PLURAL [] xref: TAO:0000125 is_a: ZFA:0000243 ! neuromast relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000259 ! mandibular lateral line relationship: start ZFS:0000036 ! Larval:Day 4 [Term] id: ZFA:0000126 name: centrum namespace: zebrafish_anatomy def: "Centra are represented by mineralized, calcified, or ossified portions that surround the notochord. The autocentrum, present in Danio and all other living teleosts, is formed by direct ossification outside the elastica externa of the notochord (Arratia, 1999)." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "autocentrum" EXACT [] xref: TAO:0000126 is_a: ZFA:0001591 ! endochondral bone relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001189 ! vertebra relationship: start ZFS:0000035 ! Larval:Protruding-mouth [Term] id: ZFA:0000127 name: mesenchyme condensations namespace: zebrafish_anatomy is_obsolete: true [Term] id: ZFA:0000128 name: midbrain namespace: zebrafish_anatomy def: "The brain region between the forebrain anteriorly and the hindbrain posteriorly, including the tectum dorsally and the midbrain tegmentum ventrally." [ZFIN:ZDB-PUB-961014-576] synonym: "mesencephalon" EXACT [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000128 is_a: ZFA:0001488 ! multi-tissue structure relationship: develops_from ZFA:0007039 ! midbrain neural tube relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000008 ! brain relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000130 name: olfactory pit namespace: zebrafish_anatomy synonym: "nasal canal" EXACT [] synonym: "nasal cavity" EXACT [] synonym: "nasal pit" EXACT [] synonym: "olfactory cavity" EXACT [] xref: TAO:0000130 is_a: ZFA:0001643 ! anatomical space relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000047 ! peripheral olfactory organ relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0000131 name: neural keel namespace: zebrafish_anatomy def: "An intermediate stage (between the neural plate and neural rod) during the early segmentation period in the morphogenesis of the central nervous system primordium; the keel is roughly triangular shaped in cross section." [ZFIN:ZDB-PUB-961014-576] synonym: "presumptive central nervous system" RELATED [] xref: TAO:0000131 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0000132 ! neural plate relationship: end ZFS:0000025 ! Segmentation:10-13 somites relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0000132 name: neural plate namespace: zebrafish_anatomy def: "Portion of tissue that is the earliest recognizable dorsal ectodermal primordium of the central nervous system present near the end of gastrulation before infolding to form the neural keel; consists of a thickened pseudostratified epithelium." [ZFIN:ZDB-PUB-961014-576] synonym: "presumptive central nervous system" RELATED [] xref: TAO:0000132 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0000063 ! presumptive neural plate relationship: end ZFS:0000024 ! Segmentation:5-9 somites relationship: start ZFS:0000020 ! Gastrula:75%-epiboly [Term] id: ZFA:0000133 name: neural rod namespace: zebrafish_anatomy def: "An intermediate stage in the development of the central nervous system present during the segmentation period; the neural rod is roughly cylindrical in shape, forms from the neural keel, and is not yet hollowed out into the neural tube." [ZFIN:ZDB-PUB-961014-576] synonym: "presumptive central nervous system" RELATED [] xref: TAO:0000133 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0000131 ! neural keel relationship: end ZFS:0000026 ! Segmentation:14-19 somites relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000135 name: notochord namespace: zebrafish_anatomy def: "Rod-like principal supportive element of the embryo and larva, present in the midline just ventral to the neural tube, and differentiating during the segmentation period to form large vacuolated epithelial cells and a surrounding sheath of fibrous and elastic layers. Layering of the sheath may differ in structure, thickness and development among groups; in cypriniforms there are actually three very thin layers to the sheath. A functional, well developed notochord is present throughout life in certain basal fish groups but not in cypriniforms." [ZFIN:ZDB-PUB-961014-576] synonym: "notocord" EXACT [] xref: TAO:0000135 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0000091 ! axial chorda mesoderm relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0000136 name: otic lateral line neuromast namespace: zebrafish_anatomy def: "Neuromast that is part of the otic lateral line. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576] synonym: "neuromast otic" EXACT [] synonym: "neuromasts otic" EXACT PLURAL [] xref: TAO:0000136 is_a: ZFA:0000243 ! neuromast relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000464 ! otic lateral line relationship: start ZFS:0000036 ! Larval:Day 4 [Term] id: ZFA:0000137 name: optic stalk namespace: zebrafish_anatomy def: "Portion of tissue that provides a pathway for axon migration from the retina. The cells of the optic stalk later differentiate into glial cells of the optic nerve." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-030210-6, ZFIN:ZDB-PUB-101201-28] synonym: "optic stalks" EXACT PLURAL [] xref: TAO:0000137 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0007031 ! anterior neural rod relationship: end ZFS:0000037 ! Larval:Day 5 relationship: part_of ZFA:0000101 ! diencephalon relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000138 name: otic placode namespace: zebrafish_anatomy def: "Primordium of the ear epithelium before it hollows into the otic vesicle, present beside the hindbrain rudiment in the mid-segmentation period. (Also see Anatomical Atlas entry for ear by T. Whitfield.)" [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-576] xref: TAO:0000138 is_a: ZFA:0001310 ! dorsolateral placode relationship: end ZFS:0000028 ! Segmentation:26+ somites relationship: part_of ZFA:0001138 ! vestibuloauditory system relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0000140 name: pancreas namespace: zebrafish_anatomy def: "The pancreas is an organ composed of endocrine and exocrine glandular tissue that produce hormones and digestive enzymes. Unlike in other studied vertebrates the pancreas in zebrafish develops from two buds, one anterior and one posterior. In adult fish the main pancreas is located on the right side attached to the lateral aspect of the intestine by the pancreatic duct. Typically, one large islet and 3-6 smaller islets occupy the main pancreas. The tail of the pancreas is embedded with single beta cells or clusters of small islets and extends caudally along the right side of the intestine." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-030902-16, ZFIN:ZDB-PUB-090616-17] xref: TAO:0000140 is_a: ZFA:0000496 ! compound organ relationship: develops_from ZFA:0001390 ! pancreatic bud relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001371 ! pancreatic system relationship: part_of ZFA:0007116 ! pleuroperitoneal region relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0000141 name: pectoral fin bud namespace: zebrafish_anatomy def: "Fin bud that develops into the pectoral fin." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "pectoral fin buds" EXACT PLURAL [] xref: TAO:0000141 is_a: ZFA:0001383 ! fin bud relationship: develops_from ZFA:0001453 ! pectoral fin field relationship: end ZFS:0000033 ! Hatching:Long-pec relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000142 name: peripheral nervous system namespace: zebrafish_anatomy def: "Nervous structures including ganglia outside of the central nervous system." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-576] synonym: "pns" EXACT [] xref: TAO:0000142 is_a: ZFA:0000396 ! nervous system relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0000143 name: retinal photoreceptor layer namespace: zebrafish_anatomy def: "The layer within the retina where the photoreceptor cell receptor segments reside. This layer is closet to the sclera." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-677] synonym: "retinal photoreceptor layers" EXACT PLURAL [] xref: TAO:0000143 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000046 ! retinal neural layer relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0000144 name: retinal pigmented epithelium namespace: zebrafish_anatomy def: "A monolayer of pigmented epithelium covering the neural retina; develops from the outer of the two layers of the optic cup." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-576] synonym: "pigmented epithelium" EXACT [] synonym: "pigmented retina" EXACT [] synonym: "pigmented retinal epithelium" EXACT [] synonym: "PRE" EXACT [] synonym: "RPE" EXACT [] xref: TAO:0000144 is_a: ZFA:0001486 ! epithelium relationship: develops_from ZFA:0000064 ! presumptive retinal pigmented epithelium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000152 ! retina relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0000146 name: presumptive brain namespace: zebrafish_anatomy def: "Embryonic structure that gives rise to the brain." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "brain rudiment" EXACT [] xref: TAO:0000146 is_a: ZFA:0001105 ! embryonic structure relationship: end ZFS:0000020 ! Gastrula:75%-epiboly relationship: part_of ZFA:0000063 ! presumptive neural plate relationship: start ZFS:0000014 ! Blastula:Sphere [Term] id: ZFA:0000148 name: presumptive midbrain namespace: zebrafish_anatomy def: "Embryonic structure that gives rise to the midbrain." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "presumptive mesencephalon" EXACT [] xref: TAO:0000148 is_a: ZFA:0001105 ! embryonic structure relationship: end ZFS:0000020 ! Gastrula:75%-epiboly relationship: part_of ZFA:0000146 ! presumptive brain relationship: part_of ZFA:0007014 ! anterior presumptive neural plate relationship: start ZFS:0000019 ! Gastrula:Shield [Term] id: ZFA:0000149 name: primitive heart tube namespace: zebrafish_anatomy def: "Multi-tissue structure that arises from the heart rudiment and will become the heart tube." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010219-2] xref: TAO:0000149 is_a: ZFA:0001488 ! multi-tissue structure relationship: develops_from ZFA:0000115 ! heart rudiment relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0000010 ! cardiovascular system relationship: part_of ZFA:0007115 ! pericardial region relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000150 name: pronephric duct namespace: zebrafish_anatomy def: "Duct of the embryonic kidney, present bilaterally ventral to the somites and leading to the cloacal chamber. Wingert et al. have suggested that the pronephric duct as described traditionally may consist of subregions which are analogous to portions of the tubule segment of mammalian and other fish nephrons." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-071029-9, ZFIN:ZDB-PUB-961014-576] synonym: "pronephric ducts" EXACT PLURAL [] xref: TAO:0000150 is_a: ZFA:0005171 ! duct relationship: develops_from ZFA:0000067 ! pronephric mesoderm relationship: end ZFS:0000039 ! Larval:Days 7-13 relationship: part_of ZFA:0000151 ! pronephros relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000151 name: pronephros namespace: zebrafish_anatomy def: "The embryonic kidney, present at the level of the third somite, is composed of two glomeruli fused at the midline, two pronephric tubules, and paired bilateral pronephric ducts that modify the composition of the blood filtrate before delivering it to the cloaca for excretion." [GOC:cvs, GOC:mh, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-576] synonym: "embryonic kidney" EXACT [ZFIN:ZDB-PUB-961014-576] synonym: "pronephric nephron" EXACT [] xref: TAO:0000151 is_a: ZFA:0001490 ! cavitated compound organ relationship: develops_from ZFA:0000067 ! pronephric mesoderm relationship: end ZFS:0000039 ! Larval:Days 7-13 relationship: part_of ZFA:0000163 ! renal system relationship: part_of ZFA:0007116 ! pleuroperitoneal region relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000152 name: retina namespace: zebrafish_anatomy def: "Multi-tissue structure that contains the retinal neural layer and the retinal pigmented epithelium, and develops from the optic cup." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-576] synonym: "retinas" EXACT PLURAL [] xref: TAO:0000152 is_a: ZFA:0001488 ! multi-tissue structure relationship: develops_from ZFA:0001202 ! optic cup relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005567 ! posterior segment eye relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0000153 name: rhombomere 8 namespace: zebrafish_anatomy def: "Hindbrain segment or neuromere." [ZFIN:ZDB-PUB-961014-576] synonym: "r8" EXACT [] xref: TAO:0000153 is_a: ZFA:0001064 ! rhombomere relationship: develops_from ZFA:0001214 ! presumptive rhombomere 8 relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000154 name: sinus venosus namespace: zebrafish_anatomy def: "Heart region collecting blood from the paired common cardinal veins and delivering to the atrium. One of four components of the heart. The sinus venosus also acts as a pacemaker and is the first to contract." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-576] synonym: "inflow tract" EXACT [] xref: TAO:0000154 is_a: ZFA:0001488 ! multi-tissue structure relationship: develops_from ZFA:0001722 ! presumptive sinus venosus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000114 ! heart relationship: start ZFS:0000032 ! Pharyngula:High-pec [Term] id: ZFA:0000155 name: somite namespace: zebrafish_anatomy def: "Undifferentiated mesodermal components of early trunk or tail segments or metameres, derived from paraxial mesoderm; forms myotomes, sclerotomes and perhaps dermatomes." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576] synonym: "somitic mesoderm" RELATED [] xref: TAO:0000155 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0000279 ! segmental plate relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001115 ! trunk relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0000156 name: somite 20 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576] xref: TAO:0000156 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000157 name: somite 30 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576] xref: TAO:0000157 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000158 name: urostyle namespace: zebrafish_anatomy def: "This centrum may be formed via the fusion of the terminal centrum and half-centrum. It is sometimes termed the 'ultimate' vertebra. Develops from the fused preural centrum 1+ ural centrum 1." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-011008-1] synonym: "compound centrum" EXACT [] synonym: "last vertebra" EXACT [] synonym: "ultimate vertebra" EXACT [] xref: TAO:0000158 is_a: ZFA:0001591 ! endochondral bone relationship: develops_from ZFA:0001581 ! ural centrum 2 relationship: develops_from ZFA:0001583 ! preural centrum 1+ ural centrum 1 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000862 ! caudal fin skeleton relationship: start ZFS:0000040 ! Larval:Days 14-20 [Term] id: ZFA:0000159 name: tectal ventricle namespace: zebrafish_anatomy synonym: "cerebral aqueduct" EXACT [] synonym: "medial tectal ventricle" EXACT [] synonym: "mesencephalic ventricle" EXACT [] synonym: "mesencephalic vesicle" EXACT [] synonym: "midbrain ventricle" EXACT [] synonym: "ventriculus mesencephali" EXACT [ZFIN:ZDB-PUB-961014-1280] xref: TAO:0000159 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000128 ! midbrain relationship: part_of ZFA:0001261 ! ventricular system relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000160 name: tegmentum namespace: zebrafish_anatomy alt_id: ZFA:0001354 def: "Multi-tissue structure that is the ventral part of the midbrain and develops from the basal plate. The tegmentum is bordered rostrally by the synencephalon, dorsal thalamus and posterior tuberculum, ventrally by the hypothalamus, and dorsolaterally by the torus semicircularis; caudally the tegmentum is continuous with the medulla oblongata." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "mesencephalic tegmentum" EXACT [] synonym: "midbrain tegmentum" EXACT [] xref: TAO:0000160 is_a: ZFA:0001488 ! multi-tissue structure relationship: develops_from ZFA:0000761 ! basal plate midbrain region relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000128 ! midbrain relationship: part_of ZFA:0001707 ! brainstem relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000161 name: third ventricle namespace: zebrafish_anatomy def: "Fluid-filled brain cavity." [ZFIN:ZDB-PUB-961014-576] synonym: "3rd ventricle" EXACT [] synonym: "diencephalic ventricle" EXACT [] synonym: "diencephalic vesicle" EXACT [] synonym: "ventriculus diencephali" EXACT [ZFIN:ZDB-PUB-961014-1280] xref: TAO:0000161 is_a: ZFA:0001488 ! multi-tissue structure relationship: develops_from ZFA:0001259 ! forebrain ventricle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000101 ! diencephalon relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000162 name: trigeminal placode namespace: zebrafish_anatomy def: "The ectodermal rudiment of the trigeminal ganglion, distinguishable during much of the segmentation period." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-576] synonym: "trigeminal placodes" EXACT PLURAL [] xref: TAO:0000162 is_a: ZFA:0001310 ! dorsolateral placode relationship: end ZFS:0000026 ! Segmentation:14-19 somites relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0000163 name: renal system namespace: zebrafish_anatomy def: "System that removes and collects metabolic waste from the blood while maintaining ion homeostasis." [ZFIN:ZDB-PUB-071029-9] synonym: "urinary system" RELATED [] xref: TAO:0000163 is_a: ZFA:0001439 ! anatomical system relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000164 name: ventral mesenchyme namespace: zebrafish_anatomy xref: TAO:0000164 is_a: ZFA:0000393 ! mesenchyme relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000165 name: inferior lobe namespace: zebrafish_anatomy def: "Multi-tissue structure that is a paired nucleus located in the lateral expansion of the dorsal hypothalamic zone." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "inferior lobe of hypothalamus" EXACT [ZFIN:ZDB-PUB-961014-1280] synonym: "inferior lobes" EXACT PLURAL [] synonym: "lateral lobe of hypothalamus" EXACT [] synonym: "lobus inferior hypothalami" EXACT [ZFIN:ZDB-PUB-961014-1280] xref: TAO:0000165 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000347 ! dorsal hypothalamic zone relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000166 name: lateral crista namespace: zebrafish_anatomy alt_id: ZFA:0000378 def: "Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own characteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "lateral crista ampullaris" EXACT [] synonym: "lateral cristae" EXACT PLURAL [] synonym: "lateral semicircular canal sensory patch" EXACT [] synonym: "lateral semicircular canal sensory patches" EXACT PLURAL [] synonym: "lc" EXACT [] synonym: "medial crista" RELATED [ZFIN:ZDB-PUB-051116-3] xref: TAO:0000166 is_a: ZFA:0007068 ! otic epithelium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000220 ! lateral semicircular canal relationship: start ZFS:0000035 ! Larval:Protruding-mouth [Term] id: ZFA:0000167 name: anal fin skeleton namespace: zebrafish_anatomy def: "Median fin skeleton that is located posterior to the anus." [TAO:curator] xref: TAO:0000167 is_a: ZFA:0001123 ! axial fin skeleton relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001162 ! anal fin relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000168 name: anterior macula namespace: zebrafish_anatomy def: "Macula that is located in the developing anterior inner ear, and gives rise to the macula utricle. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)" [GOC:ymb, http://zfin.org/zf_info/anatomy/dict/sens/sens.html, ORCiD:0000-0002-9900-7880] synonym: "am" EXACT [] synonym: "anterior sensory patch" EXACT [] xref: TAO:0000168 is_a: ZFA:0000386 ! macula relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0001671 ! macula communis relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000169 name: antorbital namespace: zebrafish_anatomy is_obsolete: true consider: ZFA:0001410 [Term] id: ZFA:0000170 name: basibranchial namespace: zebrafish_anatomy def: "Median elements that are ossified within copulae and are not assigned to a specific branchial arch number. They articulate posterolaterally with the hypobranchials." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "basibranchials" EXACT PLURAL [] xref: TAO:0000170 is_a: ZFA:0001591 ! endochondral bone relationship: develops_from ZFA:0001220 ! copula relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000095 ! pharyngeal arch 3-7 skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000171 name: basisphenoid namespace: zebrafish_anatomy comment: A basisphenoid is absent in Danio rerio; its absence is a shared derived feature of all ostariophysan fishes (Fink and Fink, '81). from ZDB-PUB-961014-192 is_obsolete: true [Term] id: ZFA:0000172 name: branchial muscle namespace: zebrafish_anatomy def: "Muscle that is part of pharyngeal arches 3-7 which are also known as the branchial arches." [GOC:CVS, ORCiD:0000-0002-2244-7917] synonym: "branchial muscles" EXACT PLURAL [] xref: TAO:0000172 is_a: ZFA:0001652 ! head muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001307 ! pharyngeal musculature relationship: part_of ZFA:0001613 ! pharyngeal arch 3-7 relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000173 name: bulbus arteriosus namespace: zebrafish_anatomy def: "Multi-tissue structure that consists of three layers and through which the blood exits the heart. The bulbus arteriosus is a pear shaped chamber that functions as a capacitor, maintaining continuous blood flow into the gill arches." [ZFIN:ZDB-PUB-001026-2] synonym: "cardiac outflow tract" EXACT [] synonym: "outflow tract" EXACT [] synonym: "truncus" EXACT [] xref: TAO:0000173 is_a: ZFA:0001488 ! multi-tissue structure relationship: develops_from ZFA:0001712 ! presumptive bulbus arteriosus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000114 ! heart relationship: start ZFS:0000032 ! Pharyngula:High-pec [Term] id: ZFA:0000174 name: cerebellovestibular tract namespace: zebrafish_anatomy def: "Cerebellar tract that consists of efferent fibers from the Purkinje cells to the neurons of the vestibular nuclei in the hindbrain. The cerebellovestibular tracts are involved in precise motor controls, such as the vestibulo-ocular reflex." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-090422-9] synonym: "caudal cerebellar tract" EXACT [] synonym: "caudal cerebellar tracts" EXACT PLURAL [] synonym: "cerebellovestibular tracts" EXACT PLURAL [] xref: TAO:0000174 is_a: ZFA:0001708 ! cerebellar white matter relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000100 ! cerebellum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000175 name: posterior lateral line nerve namespace: zebrafish_anatomy def: "Cranial nerve which enters the brain between cranial nerves VIII and IX; contains afferents and sensory efferents to the posterior lateral line ganglion and middle ganglion. Fibers from the posterior lateral line ganglion innervate the occipital dorsal lateral line and trunk lateral lines." [ZFIN:ZDB-PUB-000523-3, ZFIN:ZDB-PUB-961014-763] synonym: "caudal lateral line nerve" EXACT [] xref: TAO:0000175 is_a: ZFA:0000641 ! cranial nerve is_a: ZFA:0001479 ! lateral line nerve relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001471 ! posterior lateral line system relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000176 name: lateral nucleus of ventral telencephalon namespace: zebrafish_anatomy def: "Peripheral nucleus of the ventral telencephalon that has migrated to the periphery of the brain. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "area ventralis telencephali, nucleus lateralis" EXACT [] xref: TAO:0002204 is_a: ZFA:0001667 ! peripheral nucleus of ventral telencephalon relationship: develops_from ZFA:0005911 ! presumptive lateral nucleus of ventral telencephalon relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000177 name: caudal oblique namespace: zebrafish_anatomy synonym: "caudal obliques" EXACT PLURAL [] xref: TAO:0000177 is_a: ZFA:0000172 ! branchial muscle relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000178 name: caudal peduncle namespace: zebrafish_anatomy def: "Portion of the fish's body that is posterior to the vent and anterior to the caudal fin." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0000178 is_a: ZFA:0001308 ! organism subdivision relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001117 ! post-vent region relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000179 name: caudal root of abducens nerve namespace: zebrafish_anatomy def: "Cranial nerve root which is part of the abducens nerve (CN-VI) and is located at the level of the intermediate reticular formation. Fuses with the rostral root of the abducens nerve and courses rostrally once outside the brain stem. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209] synonym: "radix caudalis nervi abducentis" EXACT [] xref: TAO:0000179 is_a: ZFA:0001663 ! cranial nerve root relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000310 ! cranial nerve VI relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000180 name: caudal vein namespace: zebrafish_anatomy def: "Vein in the tail returning blood from the trunk and tail to the heart, leads directly into the posterior cardinal vein in the posterior trunk." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-576] synonym: "CV" EXACT [] xref: TAO:0000180 is_a: ZFA:0000082 ! vein relationship: develops_from ZFA:0001286 ! caudal vein plexus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005037 ! post-vent vasculature relationship: part_of ZFA:0005295 ! axial blood vessel relationship: start ZFS:0000036 ! Larval:Day 4 [Term] id: ZFA:0000181 name: caudal zone of dorsal telencephalon namespace: zebrafish_anatomy def: "Telencephalic nucleus which is the most caudally located part of the dorsal telencephalon and surrounds the central zone of dorsal telencephalon. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "area dorsalis telencephali, zona posterior" EXACT [] synonym: "caudal zone of D" EXACT [] synonym: "Dp" EXACT [ZFIN:ZDB-PUB-150226-6] synonym: "posterior zone of dorsal telencephalic area" EXACT [] xref: TAO:0000181 is_a: ZFA:0001660 ! telencephalic nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000505 ! dorsal telencephalon relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000182 name: central caudal thalamic nucleus namespace: zebrafish_anatomy def: "Diencephalic nucleus which is located in the caudal portion of the dorsal thalamus, ventral to the dorsal caudal thalamic nucleus." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "central posterior thalamic nucleus" EXACT [] synonym: "nucleus centralis posterior thalami" EXACT [] xref: TAO:0000182 is_a: ZFA:0001659 ! diencephalic nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000653 ! dorsal thalamus relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000183 name: central pretectum namespace: zebrafish_anatomy def: "Multi-tissue structure that is the central part of the pretectum." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0000183 is_a: ZFA:0001488 ! multi-tissue structure relationship: develops_from ZFA:0005908 ! presumptive pretectum proliferative zone relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000418 ! pretectum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000184 name: cleithrum namespace: zebrafish_anatomy def: "Transversely oriented bone connecting the occipital region of the skull dorsally and pectoral girdle ventrally; appears near the end of embryogenesis." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-576] synonym: "cleithra" EXACT PLURAL [] xref: TAO:0000184 is_a: ZFA:0001590 ! dermal bone relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000407 ! pectoral girdle relationship: start ZFS:0000032 ! Pharyngula:High-pec [Term] id: ZFA:0000185 name: commissura rostral, pars ventralis namespace: zebrafish_anatomy def: "Anterior commissure which abuts the preoptic region dorsally. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "commissura anterior, pars ventralis" EXACT [] xref: TAO:0000185 is_a: ZFA:0001108 ! anterior commissure relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000186 name: common cardinal vein namespace: zebrafish_anatomy def: "Bilaterally paired longitudinal vein; the anterior cardinal returns blood from the head, and the posterior cardinal returns it from the trunk; these two vessels join together on each side as the common cardinal vein (duct of Cuvier; misnamed the vitelline vein) that leads across the yolk cell to the heart's sinus venosus." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-576] synonym: "duct of Cuvier" EXACT [] xref: TAO:0000186 is_a: ZFA:0000082 ! vein relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000096 ! cardinal system relationship: part_of ZFA:0005024 ! trunk vasculature relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000188 name: corpus cerebelli namespace: zebrafish_anatomy def: "Brain structure which is one of three parts of the cerebellum and is the entry point for a posterior cerebellar tract that carries cerebellar afferents from many brain stem nuclei. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "cerebellar corpus" EXACT [] synonym: "corpus cerebelli granular layer " EXACT [ZFIN:ZDB-PUB-961014-1280] synonym: "corpus cerebellum" EXACT PLURAL [] xref: TAO:0000188 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000100 ! cerebellum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000189 name: otic region namespace: zebrafish_anatomy def: "Anatomical cluster of skeletal elements that is a posterolateral part of the cranium and structurally supports the vestibuloauditory system." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "cranial vault" RELATED [] xref: TAO:0000189 is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000737 ! cranium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000190 name: ganglion namespace: zebrafish_anatomy def: "Structures containing a collection of nerve cell bodies." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "ganglia" EXACT PLURAL [] xref: TAO:0000190 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000142 ! peripheral nervous system relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0000191 name: dentary namespace: zebrafish_anatomy def: "Dermal bone that forms the antero-lateral part of the lower jaw. It first appears around the anterior end of Meckel's cartilage (5.1 mm NL). In the adult, the dentary meets its counterpart anteriorly at the mandibular symphysis. The dentary abuts the retroarticular posteriorly, and it surround the anguloarticular. The dentary is connected to the maxilla by the maxillo-mandibular ligament. Dentary teeth are absent in cypriniforms, but are present in other ostariophysans." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "dentary bone" EXACT [] xref: TAO:0000191 is_a: ZFA:0001590 ! dermal bone relationship: end ZFS:0000044 ! Adult relationship: overlaps ZFA:0005488 ! mandibular symphysis relationship: part_of ZFA:0000863 ! dermatocranium relationship: part_of ZFA:0001273 ! ventral mandibular arch relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000192 name: descending trigeminal root namespace: zebrafish_anatomy def: "The bundle of the sensory root of the trigeminal nerve that descends in the medulla oblongata providing somatosensory input to the nucleus of the descending trigeminal root and to the medial funicular nucleus." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-1280] synonym: "radix descendens nervi trigemini" EXACT [] xref: TAO:0000192 is_a: ZFA:0001663 ! cranial nerve root relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000193 name: diffuse nucleus inferior lobe namespace: zebrafish_anatomy def: "Diencephalic nucleus which is part of the inferior lobe of the hypothalamus and consists of masses of small cells presumably migrated from the periventricular cell masses. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "diffuse nuclei" EXACT PLURAL [] synonym: "DIL" EXACT [] xref: TAO:0000193 is_a: ZFA:0001659 ! diencephalic nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000165 ! inferior lobe relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000194 name: dorsal accessory optic nucleus namespace: zebrafish_anatomy def: "Diencephalic nucleus that is part of the central pretectum and is ventral to the magnocellular superficial pretectal nucleus and the caudal pretectal nucleus. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "nucleus opticus accessorius dorsalis" EXACT [] xref: TAO:0000194 is_a: ZFA:0001659 ! diencephalic nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000183 ! central pretectum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000195 name: dorsal depressor namespace: zebrafish_anatomy def: "Dorsal fin muscle that moves individual rays the dorsal fin into a lowered position. The dorsal depressors extend from either the right or left base of a dorsal fin ray to the posterior edge of a proximal pterygophore in the median septum. Antagonistic to dorsal erector muscle. There is one dorsal depressor for each dorsal fin lepidotrichium." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "depressor dorsalis" EXACT [] synonym: "dorsal depressors" EXACT PLURAL [] xref: TAO:0000195 is_a: ZFA:0005270 ! depressor muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000648 ! dorsal fin musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000196 name: dorsal hypohyal bone namespace: zebrafish_anatomy def: "The dorsal hypohyal is a small cartilage replacement bone ossifying from the anterodorsal ceratohyal cartilage. Ossification begins on the medial surface of the ceratohyal cartilage at a ligamentous connection to basibranchial 1 (6.8 mm)." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "dorsal hypohyals" EXACT PLURAL [] xref: TAO:0000196 is_a: ZFA:0001381 ! hypohyal bone relationship: end ZFS:0000044 ! Adult relationship: overlaps ZFA:0005457 ! dorsal hypohyal-urohyal joint relationship: overlaps ZFA:0005458 ! dorsal hypohyal-ventral hypohyal joint relationship: overlaps ZFA:0005467 ! ceratohyal-dorsal hypohyal joint relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000197 name: dorsal habenular nucleus namespace: zebrafish_anatomy def: "Habenular nucleus where the efferent projections innervate the interpeduncular nucleus. The dorsal habenula is structurally homologous to the mammalian medial habenula." [ZFIN:ZDB-PUB-100202-7] synonym: "dorsal habenular nuclei" EXACT PLURAL [] synonym: "dorsal nuclei" EXACT PLURAL [] xref: TAO:0000197 is_a: ZFA:0005575 ! brain nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000213 ! habenula relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000199 name: dorsal periventricular hypothalamus namespace: zebrafish_anatomy def: "Diencephalic nucleus which is part of the dorsal hypothalamic zone and is located periventricularly. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] xref: TAO:0000199 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000347 ! dorsal hypothalamic zone relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000200 name: dorsal root ganglion namespace: zebrafish_anatomy def: "Trunk ganglion which is located adjacent to the spine on a dorsal root and contains the cell bodies of afferent sensory nerves." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "dorsal root ganglia" EXACT PLURAL [] synonym: "DRG" EXACT [] xref: TAO:0000200 is_a: ZFA:0001573 ! trunk ganglion relationship: develops_from ZFA:0001024 ! trunk neural crest relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000201 name: dorsal transverse namespace: zebrafish_anatomy xref: TAO:0000201 is_a: ZFA:0000172 ! branchial muscle relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000202 name: efferent branchial artery namespace: zebrafish_anatomy def: "Artery that carries blood leaving the gill. This is on the side of the aortic arch proximal to the lateral dorsal aorta." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5] synonym: "EBA" EXACT [] xref: TAO:0000202 is_a: ZFA:0000005 ! artery relationship: develops_from ZFA:0005004 ! aortic arch relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000354 ! gill relationship: part_of ZFA:0005003 ! pharyngeal vasculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000203 name: epicentrals namespace: zebrafish_anatomy comment: Epicentrals are not present in D. rerio.ZDB-PUB-031103-13 is_obsolete: true [Term] id: ZFA:0000204 name: esophagus namespace: zebrafish_anatomy def: "Esophagus part of the gut that develops from endodermal precursors at the rostral end of the digestive tract. The esophagus develops independently from the intestine." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-030312-8] synonym: "oesophagus" EXACT [] xref: TAO:0000204 is_a: ZFA:0001488 ! multi-tissue structure relationship: develops_from ZFA:0000017 ! endoderm relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000112 ! gut relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0000205 name: external lateral ventral muscle namespace: zebrafish_anatomy def: "Paired superficial caudal fin muscle that originates from a broad base at the midline and narrows toward its attachment at the ventral tip of the caudal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-060623-21] synonym: "external ventral flexor" RELATED [] synonym: "lateralis superficialis ventralis" EXACT [] synonym: "LSV" RELATED [] xref: TAO:0000205 is_a: ZFA:0005277 ! skeletal muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005818 ! superficial caudal fin musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000206 name: facial nerve motor nucleus namespace: zebrafish_anatomy synonym: "facial motor nucleus" EXACT [] synonym: "motor nucleus VII" EXACT [] synonym: "nucleus motorius nervi facialis" EXACT [] synonym: "nVII" EXACT [] xref: TAO:0000206 is_a: ZFA:0001658 ! hindbrain nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000207 name: fin musculature namespace: zebrafish_anatomy def: "Musculature part of fin." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0000207 is_a: ZFA:0000548 ! musculature system relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0000208 name: gall bladder namespace: zebrafish_anatomy def: "The compound organ that stores bile." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] xref: TAO:0000208 is_a: ZFA:0000496 ! compound organ relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000036 ! liver and biliary system relationship: part_of ZFA:0000339 ! digestive system relationship: part_of ZFA:0007116 ! pleuroperitoneal region relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0000209 name: lateral preglomerular nucleus namespace: zebrafish_anatomy def: "Preglomerular nucleus which is located between the rostral and medial preglomerular nuclei of the caudal tuberculum. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "lateral preglomerular nuclei" EXACT PLURAL [] xref: TAO:0000209 is_a: ZFA:0001662 ! preglomerular nucleus relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000210 name: gigantocellular part of magnocellular preoptic nucleus namespace: zebrafish_anatomy def: "Portion of tissue that is the caudal gigantocellular portion of the magnocellular preoptic nucleus. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "nucleus praeopticus magnocellularis, pars gigantocellularis" EXACT [] xref: TAO:0000210 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000248 ! magnocellular preoptic nucleus relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000211 name: gill lamella namespace: zebrafish_anatomy def: "Multi-tissue structure that is the transverse vertical platelet on the gill filament, through which capillaries run. The primary gill lamellae carry numerous fine layers called secondary lamellae which are the actual regions of respiration and excretion." [GOC:cvs, http://www.briancoad.com/Dictionary/G.htm, ORCiD:0000-0002-2244-7917] synonym: "gill lamellae" EXACT PLURAL [] xref: TAO:0000211 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000354 ! gill relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000212 name: granular eminence namespace: zebrafish_anatomy alt_id: ZFA:0000187 def: "Brain structure which is paired and part of the vestibulolateralis lobe of the cerebellum and extends fibers into the cerebellar crest. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "EG" RELATED [] synonym: "eminentia granularis" EXACT [] synonym: "lateral granular eminence" EXACT [] xref: TAO:0000212 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000307 ! vestibulolateralis lobe relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000213 name: habenula namespace: zebrafish_anatomy def: "The habenula relays impulses from limbic areas of the telencephalon to an unpaired midbrain nucleus, the interpeduncular nucleus." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "habenulae" EXACT PLURAL [] synonym: "habenular nucleus" EXACT [] xref: TAO:0000213 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000509 ! epithalamus relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0000214 name: hypobranchial vessel namespace: zebrafish_anatomy comment: May be the same as hypobranchial artery and may need to be merged. synonym: "hypobranchial vessels" EXACT PLURAL [] xref: TAO:0000214 is_obsolete: true replaced_by: ZFA:0000673 [Term] id: ZFA:0000215 name: inferior olive namespace: zebrafish_anatomy def: "Hindbrain nucleus where climbing fibers originate. The neurons in the inferior olive are capable of prolonged oscillatory activity. The inferior olive is called a precerebellar nucleus since virtually all of the efferent axons terminate in the cerebellum." [GOC:mh, ISBN:0471888893, ORCiD:0000-0001-9114-8737] xref: TAO:0000215 is_a: ZFA:0001658 ! hindbrain nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000216 name: infracarinalis namespace: zebrafish_anatomy comment: This may need to be treated as a waypoint in the development of the various muscles or as a group of muscles. xref: TAO:0000216 is_a: ZFA:0005145 ! muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000473 ! trunk musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000217 name: inner ear namespace: zebrafish_anatomy def: "The auditory (hearing) and vestibular (balance) organ of the fish, equivalent to the inner ear of amniotes. (See Anatomical Atlas entry for ear by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "ear" EXACT [] synonym: "otic capsule" RELATED [] synonym: "otocyst" RELATED [] xref: TAO:0000217 is_a: ZFA:0001478 ! anatomical cluster relationship: develops_from ZFA:0000051 ! otic vesicle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001138 ! vestibuloauditory system relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000219 name: intermediate reticular formation namespace: zebrafish_anatomy synonym: "intermediate reticular formations" EXACT PLURAL [] xref: TAO:0000219 is_a: ZFA:0001658 ! hindbrain nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000542 ! medial column relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000220 name: lateral semicircular canal namespace: zebrafish_anatomy alt_id: ZFA:0000361 def: "One of three fluid-filled semicircular tubes, arranged orthogonally to each other in each ear. The lateral semicircular canal is associated with the lateral crista. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "horizontal semicircular canal" EXACT [] synonym: "lateral semicircular canals" EXACT PLURAL [] synonym: "lateral semicircular duct" EXACT [] xref: TAO:0000220 is_a: ZFA:0000431 ! semicircular canal relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0000221 name: internal levator namespace: zebrafish_anatomy synonym: "internal levators" EXACT PLURAL [] xref: TAO:0000221 is_a: ZFA:0000172 ! branchial muscle relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000222 name: isthmic primary nucleus namespace: zebrafish_anatomy def: "Sensory trigeminal nucleus located in the most rostral position. It lies immediately caudal to the secondary gustatory nucleus." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-1280] synonym: "isthmic primary nuclei" EXACT PLURAL [] synonym: "isthmic primary sensory trigeminal nucleus" EXACT [ZFIN:ZDB-PUB-961014-1280] xref: TAO:0000222 is_a: ZFA:0000433 ! sensory trigeminal nucleus relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000223 name: infraorbital 1 namespace: zebrafish_anatomy def: "Dermal bone that covers the region between the anterior margin of the eye and the upper jaw. Infraorbital 1 (the lachrymal) is the first and largest bone in the infraorbital series. Bears the anterior most part of the infraorbital canal." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "lachrymal bone" EXACT [] synonym: "lacrimal" EXACT [] synonym: "lacrymal bone" EXACT [] xref: TAO:0000223 is_a: ZFA:0000376 ! infraorbital relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001649 ! infraorbital series relationship: start ZFS:0000040 ! Larval:Days 14-20 [Term] id: ZFA:0000224 name: larva namespace: zebrafish_anatomy is_obsolete: true consider: ZFS:0000035 consider: ZFS:0000036 consider: ZFS:0000037 consider: ZFS:0000038 consider: ZFS:0000039 consider: ZFS:0000040 consider: ZFS:0000041 [Term] id: ZFA:0000225 name: lateral crista primordium namespace: zebrafish_anatomy def: "Is an otic epithelium that will mature into the lateral crista." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "lateral crista primordia" EXACT PLURAL [] xref: TAO:0000225 is_a: ZFA:0007068 ! otic epithelium relationship: end ZFS:0000035 ! Larval:Protruding-mouth relationship: part_of ZFA:0000220 ! lateral semicircular canal relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0000226 name: lateral ethmoid namespace: zebrafish_anatomy def: "Large, paired cartilage bones separating the olfactory region from the orbit. Arises from both perichondral and endochondral ossifications (Harrington 1955). Bordered by the mesethmoid anteriorly and overlain by the frontal dorsally, each lateral ethmoid extends medially to meet its fellow posteriorly along the midline. Develops from the laminae orbitonasales." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "lateral ethmoids" EXACT PLURAL [] xref: TAO:0000226 is_a: ZFA:0001591 ! endochondral bone relationship: develops_from ZFA:0001503 ! lamina orbitonasalis relationship: end ZFS:0000044 ! Adult relationship: overlaps ZFA:0005420 ! autopalatine-lateral ethmoid joint relationship: part_of ZFA:0000351 ! olfactory region relationship: part_of ZFA:0001424 ! chondrocranium relationship: part_of ZFA:0001580 ! neurocranium relationship: start ZFS:0000040 ! Larval:Days 14-20 [Term] id: ZFA:0000227 name: lateral hypothalamic nucleus namespace: zebrafish_anatomy def: "Diencephalic nucleus which is the lateral part of the ventral hypothalamic zone. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "arcuate nucleus" RELATED [] synonym: "lateral hypothalamic nuclei" EXACT PLURAL [] synonym: "lateral tuberal nucleus" EXACT [] xref: TAO:0000227 is_a: ZFA:0001659 ! diencephalic nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000707 ! ventral hypothalamic zone relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000228 name: lateral line primordium namespace: zebrafish_anatomy def: "Is a portion of tissue that migrates and deposits immature neuromasts and interneuromasts." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "lateral line primordia" EXACT PLURAL [] synonym: "llp" EXACT [] xref: TAO:0000228 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000036 ! Larval:Day 4 relationship: part_of ZFA:0000034 ! lateral line system relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000229 name: lateral olfactory tract namespace: zebrafish_anatomy def: "Telencephalic white matter which extends between the olfactory bulb and the ipsilateral dorsal telencephalon and carries secondary olfactory fibers. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "tractus olfactorius lateralis" EXACT [] xref: TAO:0000229 is_a: ZFA:0000597 ! telencephalic white matter relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000230 name: longitudinal hypochordal namespace: zebrafish_anatomy def: "Muscle that attaches to the parhypurpophyses. The muscle inserts on the upper three to five caudal fin rays." [GOC:cvs, ISBN:0080585272, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-031103-13] synonym: "hypochordal longitudinalis" EXACT [] xref: TAO:0000230 is_a: ZFA:0005145 ! muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000628 ! caudal fin musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000231 name: lateral recess namespace: zebrafish_anatomy alt_id: ZFA:0005493 def: "Intracranial space formed by confluence of supraorbital, infraorbital, preopercular and temporal sensory canals that forms the lateral protrusion of the third ventricle. See also Di Dario (2004)." [GOC:cvs, GOC:mh, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-2244-7917] synonym: "lateral recess of diencephalic ventricle" EXACT [ZFIN:ZDB-PUB-091221-27] synonym: "lateral recesses" EXACT PLURAL [] synonym: "recessus lateralis" EXACT [ZFIN:ZDB-PUB-961014-1280] xref: TAO:0000231 xref: TAO:0001799 is_a: ZFA:0001643 ! anatomical space relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000161 ! third ventricle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000232 name: otic vesicle lateral protrusion namespace: zebrafish_anatomy def: "Otic vesicle protrusion that is initially laterally located and then bifurcates and fuses anteriorly with the anterior protrusion, and posteriorly with the posterior protrusion." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-090330-11] synonym: "lateral semicircular canal primordia" RELATED PLURAL [] synonym: "lateral semicircular canal primordium" RELATED [] xref: TAO:0000232 is_a: ZFA:0001715 ! otic vesicle protrusion relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000032 ! Pharyngula:High-pec [Term] id: ZFA:0000233 name: lower oral valve namespace: zebrafish_anatomy def: "Portion of tissue, located on the lower jaw that defines the caudal extent of the labial cavity. The oral valves control the flow of water into the mouth during routine respiration." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-060921-12] synonym: "breathing valve" RELATED [] synonym: "buccal valve " RELATED [] synonym: "lower internal lip" EXACT [ZFIN:ZDB-PUB-060921-12] synonym: "lower semilunar valve" EXACT [ZFIN:ZDB-PUB-060921-12] synonym: "mandibular valve" EXACT [] xref: TAO:0000233 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000590 ! oral region relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000234 name: macula neglecta namespace: zebrafish_anatomy def: "Portion of tissue that is a patch of thickened, pseudostratified epithelium in the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. The macula neglecta a pair of sensory patches positioned on the floor of the utricle adjacent to the utriculosaccular foramen at the base of the common crus." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-010912-7, ZFIN:ZDB-PUB-020403-4] synonym: "maculae neglecta" EXACT PLURAL [] xref: TAO:0000234 is_a: ZFA:0000386 ! macula relationship: develops_from ZFA:0000558 ! posterior macula relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000559 ! otolith organ relationship: start ZFS:0000040 ! Larval:Days 14-20 [Term] id: ZFA:0000235 name: magnocellular superficial pretectal nucleus namespace: zebrafish_anatomy def: "Diencephalic nucleus that is part of the superficial pretectum and is caudally contiguous with the caudal pretectal nucleus. Cells of the magnocellular superficial pretectal nucleus are slightly larger and more orderly around a central neuropil than those of the caudal pretectal nucleus. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "magnocellular superficial pretectal nuclei" EXACT PLURAL [] xref: TAO:0000235 is_a: ZFA:0001659 ! diencephalic nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000687 ! superficial pretectum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000236 name: mandibular muscle namespace: zebrafish_anatomy def: "Muscle that are part of the mandibular arch (pharyngeal arch 1)." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "mandibular muscles" EXACT PLURAL [] xref: TAO:0000236 is_a: ZFA:0001652 ! head muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001307 ! pharyngeal musculature relationship: part_of ZFA:0001612 ! pharyngeal arch 1 relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000237 name: medial forebrain bundle diencephalon namespace: zebrafish_anatomy synonym: "medial forebrain bundles diencephalon" EXACT PLURAL [] xref: TAO:0000237 is_a: ZFA:0000338 ! diencephalic white matter relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005111 ! medial forebrain bundle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000238 name: medial olfactory tract namespace: zebrafish_anatomy def: "Telencephalic white matter which extends between the olfactory bulb and the ipsilateral ventral telencephalon and carries secondary olfactory fibers. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "tractus olfactorius medialis" EXACT [] xref: TAO:0000238 is_a: ZFA:0000597 ! telencephalic white matter relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000239 name: mesocoracoid bone namespace: zebrafish_anatomy def: "Endochondral bone that articulates laterally with the medial surface of the cleithrum and ventro-medially with the scapula and coracoid. Mesocoracoid bone is a small, arch-like bone that develops from the mesocoracoid cartilage. Mesocoracoid bone is paired." [TAO:WD] synonym: "mesocoracoid bones" EXACT PLURAL [] xref: TAO:0000239 is_a: ZFA:0001591 ! endochondral bone relationship: develops_from ZFA:0001537 ! mesocoracoid cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000407 ! pectoral girdle relationship: start ZFS:0000041 ! Larval:Days 21-29 [Term] id: ZFA:0000240 name: metapterygoid namespace: zebrafish_anatomy def: "The metapterygoid is a posterior bone that ossifies in the cartilaginous palatoquadrate arch. It first appears as a rod of bone with an anterodorsally projecting process from the middle of the dorsal surface (6.4 mm). The adult metapterygoid is roughly rectangular in shape with rounded corners and an anterodorsally projecting spine that meets the entopterygoid medially in a synostosis at its posteromedial edge. The posterior end curves dorsally to form the posteroventral surface of the orbit." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "metapterygoids" EXACT PLURAL [] xref: TAO:0000240 is_a: ZFA:0001591 ! endochondral bone relationship: develops_from ZFA:0005902 ! pterygoid process relationship: end ZFS:0000044 ! Adult relationship: overlaps ZFA:0005469 ! hyomandibula-metapterygoid joint relationship: overlaps ZFA:0005486 ! quadrate-metapterygoid joint relationship: part_of ZFA:0001272 ! palatoquadrate arch relationship: part_of ZFA:0005509 ! palate relationship: start ZFS:0000040 ! Larval:Days 14-20 [Term] id: ZFA:0000241 name: midline column namespace: zebrafish_anatomy xref: TAO:0000241 is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000421 ! reticular formation relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000242 name: male organism namespace: zebrafish_anatomy def: "Gonochoristic organism that can produce male gametes." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: CARO:0000027 xref: TAO:0000242 is_a: ZFA:0001094 ! whole organism relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000041 ! Larval:Days 21-29 [Term] id: ZFA:0000243 name: neuromast namespace: zebrafish_anatomy def: "Volcano-shaped lateral line sensory organ located in characteristic positions within the skin epithelium and containing hair cells and their support elements. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:ZDB-PUB-961014-576] synonym: "lateral line neuromast" EXACT [] synonym: "lateral line organ" EXACT [] synonym: "neuromasts" EXACT PLURAL [] xref: TAO:0000243 is_a: ZFA:0001478 ! anatomical cluster relationship: develops_from ZFA:0005227 ! protoneuromast relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000034 ! lateral line system relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000244 name: nucleus Edinger-Westphal namespace: zebrafish_anatomy synonym: "Edinger-Westphal nucleus" EXACT [] xref: TAO:0000244 is_a: ZFA:0005577 ! tegmental nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000160 ! tegmentum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000245 name: nucleus of the descending root namespace: zebrafish_anatomy def: "Sensory trigeminal nucleus that lies at the mediodorsal edge of the descending trigeminal root (DV). This nucleus is not clearly delineated." [ZFIN:ZDB-PUB-961014-1280] synonym: "sensory nucleus of the descending trigeminal root" EXACT [ZFIN:ZDB-PUB-961014-1280] xref: TAO:0000245 is_a: ZFA:0000433 ! sensory trigeminal nucleus relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000246 name: nucleus taeniae namespace: zebrafish_anatomy def: "Telencephalic nucleus which is located immediately ventral to the caudal zone of dorsal telencephalon. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] xref: TAO:0000246 is_a: ZFA:0001660 ! telencephalic nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000505 ! dorsal telencephalon relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000247 name: cranial nerve VIII namespace: zebrafish_anatomy synonym: "auditory nerve" EXACT [] synonym: "CN-VIII" EXACT [] synonym: "octaval nerve" EXACT [] synonym: "statoacoustic nerve" EXACT [] xref: TAO:0000247 is_a: ZFA:0000641 ! cranial nerve relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000248 name: magnocellular preoptic nucleus namespace: zebrafish_anatomy def: "Diencephalic nucleus that is dorsal to the caudal parvocellular preoptic nucleus. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "magnocellular preoptic nuclei" EXACT PLURAL [] xref: TAO:0000248 is_a: ZFA:0001659 ! diencephalic nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000470 ! preoptic area relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000249 name: cranial nerve I namespace: zebrafish_anatomy synonym: "CN-I" EXACT [] synonym: "olfactory nerve" EXACT [] xref: TAO:0000249 is_a: ZFA:0000641 ! cranial nerve relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001149 ! olfactory system relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000250 name: opercle namespace: zebrafish_anatomy def: "Dermal bone that articulates anteriorly with the hyomandibula. The opercle is paired and typically the largest bone of the opercular series. It is derived from the neural crest and is located in 2nd pharyngeal arch." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-120529-44] synonym: "opercles" EXACT PLURAL [] xref: TAO:0000250 is_a: ZFA:0001590 ! dermal bone relationship: end ZFS:0000044 ! Adult relationship: overlaps ZFA:0005885 ! operculohyoid ligament relationship: part_of ZFA:0000555 ! opercular flap relationship: part_of ZFA:0000863 ! dermatocranium relationship: part_of ZFA:0001401 ! dorsal hyoid arch relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000251 name: opercular-branchiostegal series namespace: zebrafish_anatomy comment: ZFIN not using series organization if at all possible. is_obsolete: true consider: ZFA:0000863 [Term] id: ZFA:0000252 name: optic tract namespace: zebrafish_anatomy def: "Diencephalic white matter (tract) which is comprised of retinal ganglion cell axons after which they have passed through the optic chiasm." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "optic tracts" EXACT PLURAL [] synonym: "tractus opticus" EXACT [ZFIN:ZDB-PUB-961014-1280] xref: TAO:0000252 is_a: ZFA:0000338 ! diencephalic white matter relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0000253 name: orbitosphenoid namespace: zebrafish_anatomy def: "Large median unpaired cartilage bone consisting of two diverging plates. Positioned medial to the eye. The orbitosphenoid develops from the Trabeculae communis and forms the anterior and anteriolateral boundary of the orbital foramen and constitutes a significant part of the sidewalls and floor of the cranial cavity. Bordered by the lateral ethmoid anteriorly, and the pterosphenoid posteriorly, The orbitosphenoid may extend ventrally to meet the parasphenoid. In the adult, the orbitosphenoid is fused ventrally to the parasphenoid via a thin sheet of bone." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "orbitosphenoids" EXACT PLURAL [] xref: TAO:0000253 is_a: ZFA:0001591 ! endochondral bone relationship: develops_from ZFA:0001505 ! taenia marginalis anterior relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000290 ! sphenoid region relationship: part_of ZFA:0001424 ! chondrocranium relationship: part_of ZFA:0001580 ! neurocranium relationship: part_of ZFA:0005509 ! palate relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000254 name: pancreas primordium namespace: zebrafish_anatomy def: "Embryonic structure that develops into the pancreatic bud." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] comment: During normal development, the exocrine anlage arises from bilateral sets of progenitors within the blastoderm margin that migrate to the midline use and differentiate prior to joining the rostral intestine. ZDB-PUB-050623-3. synonym: "pancreatic anlage" EXACT [ZFIN:ZDB-PUB-050623-3] xref: TAO:0000254 is_a: ZFA:0001105 ! embryonic structure relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0001371 ! pancreatic system relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000255 name: paraxial mesoderm namespace: zebrafish_anatomy alt_id: ZFA:0000942 def: "Mesoderm which is lateral to the neural tube on both sides." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "paraxial mesenchyme" RELATED [] xref: TAO:0000255 is_a: ZFA:0000041 ! mesoderm is_a: ZFA:0000081 ! trunk mesenchyme relationship: develops_from ZFA:0000591 ! presumptive paraxial mesoderm relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0000256 name: pars subcommissuralis of ventral telencephalon namespace: zebrafish_anatomy synonym: "pars subcommissuralis of V" EXACT [] xref: TAO:0000256 is_a: ZFA:0001660 ! telencephalic nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000304 ! ventral telencephalon relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000257 name: pectoral fin cartilage namespace: zebrafish_anatomy def: "Cartilage which is part of the pectoral fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "pectoral fin cartilages" EXACT PLURAL [] xref: TAO:0000257 is_a: ZFA:0001543 ! paired fin cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000943 ! pectoral fin skeleton relationship: start ZFS:0000032 ! Pharyngula:High-pec [Term] id: ZFA:0000258 name: pelvic fin musculature namespace: zebrafish_anatomy def: "Musculature that is part of the pelvic fin." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0000258 is_a: ZFA:0000207 ! fin musculature relationship: develops_from ZFA:0001449 ! mesenchyme pelvic fin relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001184 ! pelvic fin relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000259 name: mandibular lateral line namespace: zebrafish_anatomy def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "mandibular lateral lines" EXACT PLURAL [] synonym: "mandibular line" EXACT [ZFIN:ZDB-PUB-000523-3] xref: TAO:0000259 is_a: ZFA:0001469 ! lateral line relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001470 ! anterior lateral line relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0000260 name: periventricular nucleus namespace: zebrafish_anatomy def: "Diencephalic nucleus which is the periventricular part of the ventral hypothalamic zone. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "periventricular nuclei" EXACT PLURAL [] synonym: "ventral zone of periventricular hypothalamus" EXACT [] xref: TAO:0000260 is_a: ZFA:0001659 ! diencephalic nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000707 ! ventral hypothalamic zone relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000261 name: pharyngohyoid namespace: zebrafish_anatomy xref: TAO:0000261 is_a: ZFA:0000172 ! branchial muscle relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000262 name: posterior semicircular canal namespace: zebrafish_anatomy alt_id: ZFA:0000483 def: "One of three fluid-filled semicircular tubes, arranged orthogonally to each other in each ear. The posterior semicircular canal is associated with the posterior crista. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "caudal vertical semicircular canal" EXACT [] synonym: "posterior semicircular canals" EXACT PLURAL [] synonym: "posterior semicircular duct" EXACT [] xref: TAO:0000262 is_a: ZFA:0000431 ! semicircular canal relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000032 ! Pharyngula:High-pec [Term] id: ZFA:0000263 name: precaudal vertebra namespace: zebrafish_anatomy def: "Post-cranial vertebrae lacking hemal spines (Weitzman, 1962), refers generally to the anterior vertebral region bounding the abdominal cavity. Alternate but not quite synonymous terms are abdominal or trunk vertebrae, which bear parapophyses and ribs. In many actinopterygians dorsal to the posterior abdominal cavity there are transitional vertebrae lacking ribs but also without hemal spines or sometimes even enclosed hemal arches. The primary definition would identify these vertebrae as precaudal." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-031103-13] synonym: "abdominal vertebra" RELATED [] synonym: "precaudal vertebrae" EXACT PLURAL [] synonym: "trunk vertebra" RELATED [] xref: TAO:0000263 is_a: ZFA:0001189 ! vertebra relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001115 ! trunk relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000264 name: preopercle namespace: zebrafish_anatomy def: "Dermal bone that is part of the opercular flap and bears the preopercular sensory canal. The preopercle is a paired bone and typically L-shaped, with the horizontal limb overlying the interopercle and the vertical limb overlying the opercle." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "preopercles" EXACT PLURAL [] xref: TAO:0000264 is_a: ZFA:0001590 ! dermal bone relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000555 ! opercular flap relationship: part_of ZFA:0000863 ! dermatocranium relationship: part_of ZFA:0001401 ! dorsal hyoid arch relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000265 name: presumptive dorsal mesoderm namespace: zebrafish_anatomy def: "Portion of presumptive mesoderm fated to become dorsal mesoderm. Determined by fate mapping." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0000265 is_a: ZFA:0001377 ! presumptive mesoderm relationship: end ZFS:0000019 ! Gastrula:Shield relationship: start ZFS:0000014 ! Blastula:Sphere [Term] id: ZFA:0000266 name: pretecto-mammillary tract namespace: zebrafish_anatomy synonym: "pretecto mammillary tract" EXACT [] synonym: "pretecto-mamillary tract" EXACT [] synonym: "pretectomamillary tract" EXACT [] synonym: "TPp" RELATED [] xref: TAO:0000266 is_a: ZFA:0000338 ! diencephalic white matter relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000267 name: primary olfactory fiber layer namespace: zebrafish_anatomy def: "Portion of tissue which is the most peripheral layer and present only in the rostroventral olfactory bulb. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "olfactory nerve layer" EXACT [ZFIN:ZDB-PUB-050523-2] synonym: "stratum nervosum bulbi olfactorii" EXACT [] xref: TAO:0000267 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000402 ! olfactory bulb relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000268 name: anal fin proximal radial namespace: zebrafish_anatomy def: "Rod-like internal median skeletal support bones of the anal fin, which articulate with the distal radials." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "anal fin proximal radials" EXACT PLURAL [] xref: TAO:0000268 is_a: ZFA:0001646 ! anal fin radial relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001420 ! anal fin pterygiophore relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000269 name: inferior caudal ventral flexor namespace: zebrafish_anatomy def: "Paired, deep caudal fin muscles that arise from a narrow insertion site at the 28th and 29th vertebrae then project from the vertebral column to the ventral base of the caudal fin where they attach broadly to ventral caudal fin rays." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-060623-21] synonym: "CVI" RELATED [] synonym: "flexor caudalis ventralis inferioris" EXACT [] synonym: "inferior ventral flexor" EXACT [] xref: TAO:0000269 is_a: ZFA:0005271 ! flexor muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005819 ! deep caudal fin musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000270 name: maxilla namespace: zebrafish_anatomy def: "The dermal maxilla forms part of the upper jaw. It is first visible as a small dorsoventrally oriented rod of bone in the lateral region of the upper jaw. Through anterior ossification it becomes S-shaped, with its anteriormost tip directed medially (4.8 mm NL). The posteroventral end of the maxilla is connected to the dentary by a ligament. Maxillary teeth are absent in cypriniforms, but are present in other ostariophysans. Two barbels are present on the maxilla. The presence of two pairs of maxillary barbels is considered by Cavender and Coburn (1992) to be the primitive condition for the Cyprinidae." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "maxillae" EXACT PLURAL [] xref: TAO:0000270 is_a: ZFA:0001590 ! dermal bone relationship: end ZFS:0000044 ! Adult relationship: overlaps ZFA:0005421 ! autopalatine-maxillary joint relationship: part_of ZFA:0000863 ! dermatocranium relationship: part_of ZFA:0001272 ! palatoquadrate arch relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000271 name: radial namespace: zebrafish_anatomy def: "The internal skeletal supports of the median and paired fins." [TAO:curator] synonym: "radials" EXACT PLURAL [] xref: TAO:0000271 is_a: ZFA:0001591 ! endochondral bone relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000272 name: respiratory system namespace: zebrafish_anatomy def: "System responsible for the exchange of gases across the gill membranes." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0000272 is_a: ZFA:0001439 ! anatomical system relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000274 name: rostral octaval nucleus namespace: zebrafish_anatomy def: "Octaval sensory nucleus located rostral to the magnocellular octaval nucleus and arches dorsally around the descending trigeminal root. Receives some vestibular information and is part of the vestibulo-ocular reflex circuitry and projects to abducens and oculomotor nuclei and descends to the spinal cord. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "anterior octaval nucleus" EXACT [] synonym: "nucleus octavus anterior" EXACT [] xref: TAO:0000274 is_a: ZFA:0000401 ! octaval nerve sensory nucleus relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000275 name: rostral tegmental nucleus namespace: zebrafish_anatomy xref: TAO:0000275 is_a: ZFA:0005577 ! tegmental nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000160 ! tegmentum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000276 name: rostrolateral thalamic nucleus of Butler & Saidel namespace: zebrafish_anatomy xref: TAO:0000276 is_a: ZFA:0005576 ! ventral thalamus nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000458 ! ventral thalamus relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000277 name: scale namespace: zebrafish_anatomy def: "Dermal bone that is thin, flexible, and platelike, and that develops in overlapping skinfolds that cover the body and often the head of fish and the bases of the fins." [TAO:WD] synonym: "scales" EXACT PLURAL [] xref: TAO:0000277 is_a: ZFA:0000292 ! surface structure relationship: develops_from ZFA:0001704 ! scale primordium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001183 ! dermal superficial region relationship: start ZFS:0000042 ! Juvenile:Days 30-44 [Term] id: ZFA:0000278 name: secondary gustatory nucleus medulla oblongata namespace: zebrafish_anatomy xref: TAO:0000278 is_a: ZFA:0001658 ! hindbrain nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: part_of ZFA:0001101 ! gustatory system relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000279 name: segmental plate namespace: zebrafish_anatomy def: "Unsegmented field of paraxial mesoderm present posterior to the most recently formed somite pair, from which somites will form." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-576] synonym: "presomitic mesoderm" EXACT [] synonym: "PSM" EXACT [] xref: TAO:0000279 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0000255 ! paraxial mesoderm relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0000280 name: medial valvula cerebelli namespace: zebrafish_anatomy def: "Medial division of the valvula cerebelli." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "medial division" EXACT [] synonym: "valvula cerebelli, pars medialis" EXACT [] xref: TAO:0000280 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000603 ! valvula cerebelli relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000281 name: hair cell posterior macula namespace: zebrafish_anatomy def: "Specialized neuronal receptor cells of the posterior macula. (Also see Anatomical Atlas entry for hair cells by T. Whitfield.)" [ZFIN:ZDB-PUB-961014-576] subset: cell_slim synonym: "sensory hair cells posterior macula" EXACT PLURAL [] xref: TAO:0000281 is_a: ZFA:0009366 ! hair cell relationship: develops_from ZFA:0001099 ! immature hair cell posterior macula relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000558 ! posterior macula relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000282 name: sensory system namespace: zebrafish_anatomy def: "Nervous system responsible for transmitting sensory stimuli." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "sensory systems" EXACT PLURAL [] xref: TAO:0000282 is_a: ZFA:0001439 ! anatomical system relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000396 ! nervous system relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0000284 name: subopercle namespace: zebrafish_anatomy def: "Dermal bone lying below the opercle. The subopercle is a paired bone." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "subopercles" EXACT PLURAL [] xref: TAO:0000284 is_a: ZFA:0001590 ! dermal bone relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000555 ! opercular flap relationship: part_of ZFA:0000863 ! dermatocranium relationship: part_of ZFA:0001401 ! dorsal hyoid arch relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000285 name: superficial adductor namespace: zebrafish_anatomy def: "Pectoral fin muscle that develops from the primitive pectoral fin adductor. The adductor superficialis originates at the cleithrum and inserts on all fins rays except the first. Insertion of the adductor superficialis on fin rays is distal to the fin ray bases." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-050920-7] synonym: "adductor superficialis" EXACT [ZFIN:ZDB-PUB-050920-7] synonym: "superficial adductors" EXACT PLURAL [] xref: TAO:0000285 is_a: ZFA:0005268 ! adductor muscle relationship: develops_from ZFA:0005650 ! primitive pectoral fin adductor relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000563 ! pectoral fin musculature relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0000286 name: superficial lateralis namespace: zebrafish_anatomy xref: TAO:0000286 is_a: ZFA:0005145 ! muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000473 ! trunk musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000287 name: superior caudal dorsal flexor namespace: zebrafish_anatomy def: "Paired, deep caudal fin muscles that originate from the 30th vertebra and extend toward the dorsal base of the caudal fin where they insert broadly on fin rays." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-060623-21] synonym: "CDS" RELATED [] synonym: "flexor caudalis dorsalis superioris " EXACT [] synonym: "superior dorsal flexor" EXACT [] xref: TAO:0000287 is_a: ZFA:0005271 ! flexor muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005819 ! deep caudal fin musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000288 name: supracarinalis namespace: zebrafish_anatomy xref: TAO:0000288 is_a: ZFA:0005145 ! muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000473 ! trunk musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000289 name: supramaxillae namespace: zebrafish_anatomy comment: Supramaxillary bones are absent from D. rerio, as in other ostariophysans (Fink and Fink, '81) is_obsolete: true [Term] id: ZFA:0000290 name: sphenoid region namespace: zebrafish_anatomy def: "Anatomical cluster that forms the floor and sidewalls of the middle part of the cranium." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0000290 is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000737 ! cranium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000291 name: medial octavolateralis nucleus namespace: zebrafish_anatomy def: "Lateral line sensory nucleus located in the cerebellum that processes sensory input from the lateral line." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "intermediate octavolateral nucleus" EXACT [] synonym: "medial octavolateralis nuclei" EXACT PLURAL [] synonym: "MON" RELATED [] xref: TAO:0000291 is_a: ZFA:0000381 ! lateral line sensory nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000100 ! cerebellum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000292 name: surface structure namespace: zebrafish_anatomy def: "Organism subdivision which is the collection of anatomical structures on the body surface." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "surface structures" EXACT PLURAL [] xref: TAO:0000292 is_a: ZFA:0001308 ! organism subdivision relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0000293 name: synencephalon namespace: zebrafish_anatomy def: "Multi-tissue structure that is located between the dorsal diencephalon and the mesencephalon and contains the caudal commissure. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] xref: TAO:0000293 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000101 ! diencephalon relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000294 name: torus lateralis namespace: zebrafish_anatomy def: "Diencephalic nucleus which is part of the caudal tuberculum. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "lateral torus" EXACT [] xref: TAO:0000294 is_a: ZFA:0001659 ! diencephalic nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000633 ! caudal tuberculum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000295 name: trigeminal ganglion namespace: zebrafish_anatomy def: "A prominent collection of touch-sensory neurons of the trigeminal or fifth cranial nerve, positioned beside the brain between the eye and the ear." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-576] synonym: "5th ganglion" EXACT [] synonym: "fifth ganglion" EXACT [] synonym: "gV" EXACT [] synonym: "trigeminal ganglia" EXACT PLURAL [] xref: TAO:0000295 is_a: ZFA:0000013 ! cranial ganglion relationship: develops_from ZFA:0000080 ! trigeminal neural crest relationship: develops_from ZFA:0000162 ! trigeminal placode relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000296 name: uncrossed tecto-bulbar tract namespace: zebrafish_anatomy xref: TAO:0000296 is_a: ZFA:0000446 ! tecto-bulbar tract relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000297 name: vagal lobe namespace: zebrafish_anatomy def: "The multi-tissue, vagal lobe is a large, paired brain stem structure flanking the unpaired facial lobe laterally. The vagal lobe contains motor and gustatory neurons. While some degree of histological segregation is apparent within the vagal lobe, a clear lamination, as seen in goldfish or carp is absent." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-1280] synonym: "LX" EXACT [ZFIN:ZDB-PUB-961014-1280] is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000298 name: vent namespace: zebrafish_anatomy def: "Is a surface structure and is the external opening of the cloaca." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] synonym: "cloacal opening" EXACT [ZFIN:ZDB-PUB-110602-26] synonym: "cloacal vent " EXACT [] xref: TAO:0000298 is_a: ZFA:0000292 ! surface structure relationship: develops_from ZFA:0000066 ! proctodeum relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005781 ! cloaca relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000299 name: ventral entopeduncular nucleus of ventral telencephalon namespace: zebrafish_anatomy def: "Peripheral nucleus of the ventral telencephalon that is a band of tightly packed cells starting at the level of the anterior commissure and extends into the telencephalo-diencephalic boundary region. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] comment: The GAD67-positive (dorsal) entopeduncular\nnucleus (EN= former ENd) appears to be anatomically\nseparate from the GAD67-negative bed nucleus of the\nstria medullaris (BNSM), which was formerly called the ventral\npart of the entopeduncular nucleus (ENv). ZDB-PUB-090814-14. synonym: "endopeduncular nucleus, ventral part" EXACT [] synonym: "entopeduncular nucleus, ventral part" EXACT [] synonym: "ENv" EXACT [] synonym: "nucleus entopeduncularis, pars ventralis" EXACT [] synonym: "ventral entopeduncular nucleus V" EXACT [] xref: TAO:0000299 is_a: ZFA:0001667 ! peripheral nucleus of ventral telencephalon relationship: develops_from ZFA:0005910 ! presumptive ventral entopeduncular nucleus relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000300 name: ventral hypohyal bone namespace: zebrafish_anatomy def: "The ventral hypohyal ossifies first along the anteroventral tip of the ceratohyal cartilage at the insertion of the tendon from the sternohyoideus (5.7 mm)." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "lower hypohyal" EXACT [] synonym: "ventrohyal" EXACT [] xref: TAO:0000300 is_a: ZFA:0001381 ! hypohyal bone relationship: end ZFS:0000044 ! Adult relationship: overlaps ZFA:0005458 ! dorsal hypohyal-ventral hypohyal joint relationship: overlaps ZFA:0005466 ! ceratohyal-ventral hypohyal joint relationship: overlaps ZFA:0005476 ! inter-ventral hypohyal joint relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000301 name: medial rectus namespace: zebrafish_anatomy def: "Extraocular muscle that runs parallel to the long axis of the fish and inserts on the anterior side of the eye at the sclera-corneal (SC) junction. The medial rectus lies in the same anatomical plane as the lateral rectus. The medial rectus is innervated by the oculomotor nerve." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-111205-9] comment: Mature form at Hatching:Long-pec. synonym: "medial recti" EXACT PLURAL [] xref: TAO:0000301 is_a: ZFA:0005145 ! muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000511 ! extraocular musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000302 name: ventral habenular nucleus namespace: zebrafish_anatomy def: "Habenular nucleus positioned ventromedially to the dorsal habenular nuclei. The ventral habenular nuclei are paired and symmetrical, each have a conical shape defined by a wide rostral end, occupying the entire anterior region of the habenula, and a narrow caudal end. The axons of the ventral habenular nucleus passed laterally through the interpeduncular nucleus and projected to the ventral part of the median raphe. The ventral habenular nucleus is homolog mammalian lateral habenular nucleus." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-100202-7, ZFIN:ZDB-PUB-120709-5] xref: TAO:0000302 is_a: ZFA:0005575 ! brain nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000213 ! habenula relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000303 name: female organism namespace: zebrafish_anatomy def: "Gonochoristic organism that can produce female gametes." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: CARO:0000028 xref: TAO:0000303 is_a: ZFA:0001094 ! whole organism relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000001 ! Zygote:1-cell [Term] id: ZFA:0000304 name: ventral telencephalon namespace: zebrafish_anatomy def: "Brain structure which is the ventral part of the telencephalon and is consists of periventricular nuclei surrounding the unpaired median ventricle and those which have migrated away from the ependyma. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "area ventralis telencephali" EXACT [] synonym: "subpallium" EXACT [] xref: TAO:0000304 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000079 ! telencephalon relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000305 name: ventral sulcus namespace: zebrafish_anatomy def: "Groove that separates the paired inferior (or lateral) lobes of the hypothalamus from the tuberal hypothalamus." [GOC:mh, http://en.wikipedia.org/wiki/Hypothalamic_sulcus, ORCiD:0000-0001-9114-8737] synonym: "hypothalamic sulcus" RELATED [] xref: TAO:0000305 is_a: ZFA:0001690 ! groove relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000032 ! hypothalamus relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000306 name: ventrolateral thalamic nucleus namespace: zebrafish_anatomy xref: TAO:0000306 is_a: ZFA:0005576 ! ventral thalamus nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000458 ! ventral thalamus relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000307 name: vestibulolateralis lobe namespace: zebrafish_anatomy def: "Brain structure which is part of the cerebellum consists of the paired granular eminentia and the medial caudal lobe. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] xref: TAO:0000307 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000100 ! cerebellum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000308 name: prevomer namespace: zebrafish_anatomy def: "A thin medial unpaired dermal bone that is kite or paddle-shape. Underlying the ethmoid, and slightly overlapping the parasphenoid posteriorly, the prevomer bears an anterolateral projection that terminates in a concave depression in which the preethmoids sit." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "vomer" EXACT [ZFIN:ZDB-PUB-961014-192] xref: TAO:0000308 is_a: ZFA:0001590 ! dermal bone relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000351 ! olfactory region relationship: part_of ZFA:0000863 ! dermatocranium relationship: part_of ZFA:0005509 ! palate relationship: start ZFS:0000041 ! Larval:Days 21-29 [Term] id: ZFA:0000309 name: external yolk syncytial layer namespace: zebrafish_anatomy def: "The portion of the YSL that is outside of the blastoderm margin during epiboly." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-576] synonym: "E-YSL" EXACT [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000309 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000030 ! Pharyngula:Prim-15 relationship: part_of ZFA:0000088 ! yolk syncytial layer relationship: start ZFS:0000013 ! Blastula:Oblong [Term] id: ZFA:0000310 name: cranial nerve VI namespace: zebrafish_anatomy def: "Cranial nerve which exits the medulla oblongata and controls the lateral movement of the eye. The caudal and rostral roots fuse together and course rostrally once they are outside the brainstem. The abducens nerve innervates the lateral rectus extraocular muscle." [GOC:mh, GOC:ymb, ISBN:3764351209, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-131119-12] synonym: "abducens nerve" EXACT [] synonym: "CN-VI" EXACT [] synonym: "nervus abducens" EXACT [] xref: TAO:0000310 is_a: ZFA:0000641 ! cranial nerve relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000311 name: adductor mandibulae complex namespace: zebrafish_anatomy def: "Is a mandibular muscle that consists of three subdivisions A1, A2, and A3. All three originate on the hyomandibula and suspensorium but each has a distinct insertion. A1 inserts on the maxilla, A2 inserts along the caudal margin of the articular and A3 inserts on the medial surface of the articular." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-070330-4] xref: TAO:0000311 is_a: ZFA:0005268 ! adductor muscle relationship: develops_from ZFA:0007049 ! adductor mandibulae relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000042 ! Juvenile:Days 30-44 [Term] id: ZFA:0000312 name: mesencephalic nucleus of trigeminal nerve namespace: zebrafish_anatomy def: "Sensory trigeminal nucleus located at the tectal ventricle near the synencephalon and optic tectum that contains large pyriform neurons. The sensory fibers of the large pyriform neurons that run peripherally in the trigeminal nerve." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-1280] synonym: "mesencephalic nuclei of trigeminal nerves" EXACT PLURAL [] xref: TAO:0000312 is_a: ZFA:0000433 ! sensory trigeminal nucleus relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000313 name: anal inclinator namespace: zebrafish_anatomy def: "Series of paired muscles that have a distal attachment at the lateral base of each ray and a proximal attachment to the hypaxialis. The left and right inclinators attach the integument and trunk muscles to the base of each ray." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-171118-8] synonym: "anal inclinators" EXACT PLURAL [] synonym: "inclinatores anales" EXACT [ZFIN:ZDB-PUB-171118-8] xref: TAO:0000313 is_a: ZFA:0005276 ! inclinator muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001154 ! anal fin musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000314 name: anterior semicircular canal namespace: zebrafish_anatomy alt_id: ZFA:0000675 def: "One of three fluid-filled semicircular tubes, arranged orthogonally to each other in each ear. The anterior semicircular canal is associated with the anterior crista. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "anterior semicircular canals" EXACT PLURAL [] synonym: "anterior semicircular duct" EXACT [] synonym: "rostral vertical semicircular canal" EXACT [] xref: TAO:0000314 is_a: ZFA:0000431 ! semicircular canal relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000032 ! Pharyngula:High-pec [Term] id: ZFA:0000315 name: asteriscus namespace: zebrafish_anatomy def: "Otolith part of lagena." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-020403-4] synonym: "lagenar otolith" EXACT [] synonym: "lagenolith" EXACT [] xref: TAO:0000315 is_a: ZFA:0001617 ! otolith relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000374 ! lagena relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000316 name: basihyal bone namespace: zebrafish_anatomy def: "Endochondral bone that is median and is the anterior-most bone of the ventral hyoid arch, the 'tongue' of the a fish. Ossification of the cartilaginous basihyal is first visible at the posterior end of the club-shaped basihyal cartilage (6.0 mm). Ossification spreads throughout the cartilage, except for the anterior tip, which remains cartilaginous. The posteroventral tip extends between the left and right dorsal hypohyals." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "basihyal" RELATED [] synonym: "basihyoid" EXACT [] synonym: "glossohyal" EXACT [] xref: TAO:0000316 is_a: ZFA:0001591 ! endochondral bone relationship: develops_from ZFA:0001510 ! basihyal cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001402 ! ventral hyoid arch relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000317 name: postcranial axial skeleton namespace: zebrafish_anatomy def: "The post-cranial structural components forming the long axis of the vertebrate body; in Danio, consisting of the notochord, vertebrae, ribs, supraneurals, intermuscular bones, and unpaired median fins." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "axial skeleton" EXACT [] xref: TAO:0000317 is_a: ZFA:0000434 ! skeletal system relationship: develops_from ZFA:0001080 ! sclerotome relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000318 name: brainstem and spinal white matter namespace: zebrafish_anatomy def: "CNS white matter that is part of the brain stem or spinal cord." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "brain stem and spinal tract/commissure" EXACT [] synonym: "brain stem/spinal tracts and commissures" EXACT PLURAL [] xref: TAO:0000318 is_a: ZFA:0001682 ! white matter relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001707 ! brainstem relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000319 name: branchiostegal membrane namespace: zebrafish_anatomy def: "The portion of tissue forming the membrane connecting the branchiostegals and enclosing the gill chamber." [http://www.fishbase.org/glossary/Glossary.php?q=branchiostegal+membrane] synonym: "branchiostegal membranes" EXACT PLURAL [] xref: TAO:0000319 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000354 ! gill relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000320 name: caudal commissure namespace: zebrafish_anatomy def: "Diencephalic tract which is located in the vicinity of the dorsal diencephalon and mesencephalon and connects the pretectal nuclei. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "PC" RELATED [] synonym: "posterior commissure" EXACT [] xref: TAO:0000320 is_a: ZFA:0000338 ! diencephalic white matter relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000293 ! synencephalon relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000321 name: caudal levator namespace: zebrafish_anatomy synonym: "caudal levators" EXACT PLURAL [] xref: TAO:0000321 is_a: ZFA:0000172 ! branchial muscle relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000322 name: caudal octaval nucleus namespace: zebrafish_anatomy synonym: "caudal octaval nuclei" EXACT PLURAL [] xref: TAO:0000322 is_a: ZFA:0000401 ! octaval nerve sensory nucleus relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000323 name: mesethmoid bone namespace: zebrafish_anatomy def: "Median unpaired cartilage bone that ossifies as a perichondral lamellae ensheathing the nasal septum anterodorsally and laterally (Harrington, 1955). In adult D. rerio, the center of the mesethmoid remains cartilaginous (Cubbage & Mabee, 1996). The mesethmoid meets the supraethmoid dorsally, the lateral ethmoids posterolaterally, and the vomer and parasphenoid ventrally in synostoses. Anterolaterally the mesethmoid meets the preethmoids in synchondroses." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "ethmoid bone" EXACT [] xref: TAO:0000323 is_a: ZFA:0001591 ! endochondral bone relationship: develops_from ZFA:0001321 ! neurocranial trabecula relationship: develops_from ZFA:0001405 ! ethmoid cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000351 ! olfactory region relationship: part_of ZFA:0001424 ! chondrocranium relationship: part_of ZFA:0001580 ! neurocranium relationship: start ZFS:0000041 ! Larval:Days 21-29 [Term] id: ZFA:0000324 name: caudal periventricular hypothalamus namespace: zebrafish_anatomy def: "Diencephalic nucleus which is part of the caudal hypothalamus and surrounds the paired posterior ventricular recesses of the third ventricle. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "caudal zone of periventricular hypothalamus" EXACT [] synonym: "nucleus periventricularis hypothalami, zona caudalis" EXACT [] xref: TAO:0000324 is_a: ZFA:0001659 ! diencephalic nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000634 ! caudal hypothalamic zone relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000325 name: caudal thalamic nucleus namespace: zebrafish_anatomy def: "Diencephalic nucleus which is part of the caudal tuberculum. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "posterior thalamic nucleus" EXACT [] xref: TAO:0000325 is_a: ZFA:0001659 ! diencephalic nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000633 ! caudal tuberculum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000326 name: caudal vertebra namespace: zebrafish_anatomy def: "Vertebra bearing a hemal arch and spine. The most posterior caudal vertebrae support the caudal fin and are referred to as preural vertebrae." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "caudal vertebrae" EXACT PLURAL [] xref: TAO:0000326 is_a: ZFA:0001189 ! vertebra relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000327 name: central zone of the optic tectum namespace: zebrafish_anatomy xref: TAO:0000327 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000445 ! optic tectum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000328 name: cephalic musculature namespace: zebrafish_anatomy def: "Musculature system of the pharyngeal and head regions." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "head muscles" RELATED [] xref: TAO:0000328 is_a: ZFA:0000548 ! musculature system relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0000329 name: chorion namespace: zebrafish_anatomy def: "The egg shell." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-576] xref: TAO:0000329 is_a: ZFA:0000020 ! extraembryonic structure relationship: end ZFS:0000032 ! Pharyngula:High-pec relationship: start ZFS:0000001 ! Zygote:1-cell [Term] id: ZFA:0000330 name: cloacal chamber namespace: zebrafish_anatomy def: "Space proximal to the urogenital pore where the pronephric duct, intestine and the oviduct or sperm duct empties." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "cloaca lumen" EXACT [] xref: TAO:0000330 is_a: ZFA:0001643 ! anatomical space relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005781 ! cloaca relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000331 name: commissure infima of Haller namespace: zebrafish_anatomy synonym: "commissura infima Halleri" EXACT [] synonym: "commissura infima of Haller" EXACT [] xref: TAO:0000331 is_a: ZFA:0000318 ! brainstem and spinal white matter relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000332 name: coracoid namespace: zebrafish_anatomy def: "Endochondral bone that articulates dorsally with the scapula and with the mesocoracoid when the latter is present, posteriorly with the lower two or three proximal radials and antero-ventrally with the cleithrum. The coracoid develops from the scapulo-coracoid cartilage. The coracoid is paired." [TAO:GA_TG] synonym: "coracoids" EXACT PLURAL [] synonym: "scapulocoracoid" RELATED [] xref: TAO:0000332 is_a: ZFA:0001591 ! endochondral bone relationship: develops_from ZFA:0001455 ! scapulocoracoid relationship: end ZFS:0000044 ! Adult relationship: overlaps ZFA:0005470 ! inter-coracoid joint relationship: part_of ZFA:0000407 ! pectoral girdle relationship: start ZFS:0000040 ! Larval:Days 14-20 [Term] id: ZFA:0000333 name: mesovarium namespace: zebrafish_anatomy xref: TAO:0000333 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000403 ! ovary relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000334 name: corpus mamillare namespace: zebrafish_anatomy def: "Brain structure which is located ventrolaterally to the caudal preglomerular nucleus and in the dorsomedial aspect of the caudal protrusion of the inferior lobe of the hypothalamus. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "mammillary body" EXACT [] xref: TAO:0000334 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000633 ! caudal tuberculum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000335 name: crossed tecto-bulbar tract namespace: zebrafish_anatomy synonym: "tractus tectobulbaris cruciatus" EXACT [] xref: TAO:0000335 is_a: ZFA:0000446 ! tecto-bulbar tract relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000336 name: hypural arches namespace: zebrafish_anatomy is_obsolete: true consider: ZFA:0000364 [Term] id: ZFA:0000337 name: dermopalatine namespace: zebrafish_anatomy comment: Doesn't seem to exist in zebrafish. is_obsolete: true [Term] id: ZFA:0000338 name: diencephalic white matter namespace: zebrafish_anatomy def: "CNS white matter that is part of the diencephalon." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "diencephalic tract/commissure" EXACT [] xref: TAO:0000338 is_a: ZFA:0001682 ! white matter relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000101 ! diencephalon relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000339 name: digestive system namespace: zebrafish_anatomy def: "Anatomical system that processes ingested substances." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0000339 is_a: ZFA:0001439 ! anatomical system relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000340 name: dorsal entopeduncular nucleus of ventral telencephalon namespace: zebrafish_anatomy def: "Peripheral nucleus of the ventral telencephalon which is a band of tightly packed cells starting at the level of the anterior commissure and disappearing more rostrally. May be homologous to the intermediate nucleus of the area ventralis of other species. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "ENd" EXACT [] synonym: "endopeduncular nucleus, dorsal part" EXACT [] synonym: "entopeduncular nucleus, dorsal part" EXACT [] synonym: "nucleus entopeduncularis, pars dorsalis" EXACT [] xref: TAO:0000340 is_a: ZFA:0001667 ! peripheral nucleus of ventral telencephalon relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000341 name: inferior caudal dorsal flexor namespace: zebrafish_anatomy def: "Paired, deep caudal fin muscles that arise from a narrow insertion site at the 28th and 29th vertebrae, then extend toward the dorsal base of the caudal fin where they insert broadly on fin rays." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-060623-21] synonym: "CDI" RELATED [] synonym: "dorsal flexor" RELATED [] synonym: "dorsal flexors" EXACT PLURAL [] synonym: "flexor caudalis dorsalis inferioris" EXACT [] xref: TAO:0000341 is_a: ZFA:0005271 ! flexor muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005819 ! deep caudal fin musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000342 name: dorsal inclinator namespace: zebrafish_anatomy def: "Muscle of the dorsal fin that are thin, arise from the lateral edge of fin bases, and attach to the skin just above the epaxial muscle. The inclinator muscles bend the fin sideways. There is one dorsal inclinator for each dorsal fin lepidotrichium." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-060623-21] synonym: "dorsal inclinators" EXACT PLURAL [] synonym: "inclinator dorsalis" EXACT [] xref: TAO:0000342 is_a: ZFA:0005276 ! inclinator muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000648 ! dorsal fin musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000343 name: dorsal nucleus of ventral telencephalon namespace: zebrafish_anatomy def: "Periventricular nucleus which lies rostral to the anterior commissure and is contiguous caudally with the supracommissural nucleus of the ventral telencephalon. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "area ventralis telencephali, nucleus dorsalis" EXACT [] synonym: "dorsal division of ventral telencephalic area" RELATED [] synonym: "dorsal nucleus of V" EXACT [] synonym: "Vd " RELATED [ZFIN:ZDB-PUB-961014-1280] xref: TAO:0000343 is_a: ZFA:0001666 ! periventricular nucleus of ventral telencephalon relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000344 name: middle lateral line namespace: zebrafish_anatomy def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "middle lateral lines" EXACT PLURAL [] xref: TAO:0000344 is_a: ZFA:0001469 ! lateral line relationship: develops_from ZFA:0005118 ! middle lateral line primordium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001470 ! anterior lateral line relationship: part_of ZFA:0005114 ! middle lateral line system relationship: start ZFS:0000031 ! Pharyngula:Prim-25 [Term] id: ZFA:0000345 name: dorsal rectus namespace: zebrafish_anatomy def: "Extraocular muscle that inserts at the scleral corneal junction on the dorsal side of the eye. The dorsal rectus is innervated by the oculomotor nerve. The dorsal rectus and dorsal oblique muscles have overlapping insertions in the adult eye though they have distinct insertion sites in 5dpf fish." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-111205-9] comment: Mature form at Larval:Protruding-mouth. synonym: "dorsal recti" EXACT PLURAL [] synonym: "superior rectus" EXACT [ZFIN:ZDB-PUB-110512-18] xref: TAO:0000345 is_a: ZFA:0005145 ! muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000511 ! extraocular musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000346 name: dorsal tegmental nucleus namespace: zebrafish_anatomy def: "Tegmental nucleus that is immediately adjacent to the nucleus lateralis valvulae (NLV). This nucleus is sometimes considered part of the NLV but the cells are more densely packed. The nucleus extends rostrally into the mesencephalon." [ZFIN:ZDB-PUB-961014-1280] synonym: "DTN" RELATED [] synonym: "nucleus tegmentalis dorsalis" EXACT [] xref: TAO:0000346 is_a: ZFA:0005577 ! tegmental nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000160 ! tegmentum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000347 name: dorsal hypothalamic zone namespace: zebrafish_anatomy def: "Brain structure which is the dorsal most region of the hypothalamus and expands laterally and emerges caudal to the ventral zone and is separated from the median tuberal portion by a deep ventral sulcus. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] xref: TAO:0000347 is_a: ZFA:0001488 ! multi-tissue structure relationship: develops_from ZFA:0006000 ! intermediate hypothalamus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000032 ! hypothalamus relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000348 name: duodenum namespace: zebrafish_anatomy is_obsolete: true [Term] id: ZFA:0000349 name: epaxialis namespace: zebrafish_anatomy def: "Skeletal muscle that is the dorsal-most component of the body musculature. The anterior region attaches to the back of the cranial vault and the dorsal region of the pectoral girdle. The epaxialis is bound to the skin by fibrous connective tissue and internally it inserts over the dorsal portion of the vertebral centra and fin pterygiophores and the neural spines. Posteriorly the epaxialis overlies the modified muscle of the caudal fin and inserts onto the dorsal ray bases of the fin. The anterior epaxial plays a role in feeding and the posterior region is central to locomotion." [GOC:cvs, ISBN:0125296509, ORCiD:0000-0002-2244-7917] xref: TAO:0000349 is_a: ZFA:0005277 ! skeletal muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000473 ! trunk musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000350 name: epipleural namespace: zebrafish_anatomy def: "Epipleurals lie below the horizontal septum and are posteroventrally directed. There are ossified epipleurals in certain ostariophysans. In many lower elopocephalan teleosts including ostariophysans the epipleural bones develop an anterodorsal branch so that they are forked proximally." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "epipleurals" EXACT PLURAL [] xref: TAO:0000350 is_a: ZFA:0000526 ! intermuscular bone relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0000351 name: olfactory region namespace: zebrafish_anatomy def: "Anatomical cluster that is located in the anterior region of the cranium and provides structural support for the peripheral olfactory organ." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "ethmoid region" EXACT [] xref: TAO:0000351 is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000737 ! cranium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000352 name: external cellular layer namespace: zebrafish_anatomy def: "Portion of tissue which is located between the glomerular layer and internal cellular layer of the olfactory bulb, and contains large mitral cells whose efferent axons form most of the lateral and medial olfactory tracts. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "stratum cellulare externum bulbi olfactorii" EXACT [] xref: TAO:0000352 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000402 ! olfactory bulb relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000353 name: fasciculus retroflexus namespace: zebrafish_anatomy def: "Paired fasciculus that connects the habenula to the interpeduncular nucleus. In zebrafish the fascicles seem to gather under the raphe nucleus and don't extend to the medulla." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-010601-11] synonym: "fasciculus retroflexi" EXACT PLURAL [] synonym: "habenulo-interpeduncular tract" EXACT [] synonym: "habenulointerpeduncular tract" EXACT [] synonym: "tractus habenulo-interpeduncularis" EXACT [] xref: TAO:0000353 is_a: ZFA:0000338 ! diencephalic white matter relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000354 name: gill namespace: zebrafish_anatomy def: "Compound organ that consists of gill filaments, gill lamellae, gill rakers and pharyngeal arches 3-7. The gills are responsible for primary gas exchange between the blood and the surrounding water." [http://www.briancoad.com/Dictionary/G.htm] synonym: "gills" EXACT PLURAL [] xref: TAO:0000354 is_a: ZFA:0000496 ! compound organ relationship: develops_from ZFA:0001107 ! internal gill bud relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000272 ! respiratory system relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000355 name: roof plate midbrain region namespace: zebrafish_anatomy def: "Roof plate that is part of the midbrain." [GOC:CVS, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] xref: TAO:0000355 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0007058 ! roof plate relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000356 name: gill raker namespace: zebrafish_anatomy def: "Dermal bone that is a small anterior projection present on all of pharyngeal arches 3-7. They support the gills. The rakers have epithelial denticles and both their gross and fine structure serves to retain food particles in the mouth." [http://www.briancoad.com/Dictionary/G.htm, ZFIN:ZDB-PUB-081008-12] synonym: "gill rakers" EXACT PLURAL [] xref: TAO:0000356 is_a: ZFA:0001590 ! dermal bone relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000095 ! pharyngeal arch 3-7 skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000357 name: glomerular layer namespace: zebrafish_anatomy def: "Multi-tissue structure which is located in between the primary olfactory fiber layer and the external cellular layer of the olfactory bulb. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "stratum glomerulosum bulbi olfactorii" EXACT [] xref: TAO:0000357 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000402 ! olfactory bulb relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000358 name: granular layer corpus cerebelli namespace: zebrafish_anatomy def: "Portion of tissue which is the innermost layer of the corpus cerebelli and consists of small granule cells and larger Golgi cells. The granule cell receive excitatory input from the mossy fibers, and send parallel fibers to the molecular layer where they synapse with Purkinje cell dendrites." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0000358 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000188 ! corpus cerebelli relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000359 name: habenular commissure namespace: zebrafish_anatomy synonym: "commissura habenularum" EXACT [] xref: TAO:0000359 is_a: ZFA:0000338 ! diencephalic white matter relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000360 name: heart tube namespace: zebrafish_anatomy def: "Cavitated compound organ that will become the adult heart following looping morphogenesis and valve formation." [ZFIN:ZDB-PUB-010219-2] xref: TAO:0000360 is_a: ZFA:0001490 ! cavitated compound organ relationship: develops_from ZFA:0000149 ! primitive heart tube relationship: end ZFS:0000031 ! Pharyngula:Prim-25 relationship: part_of ZFA:0000010 ! cardiovascular system relationship: part_of ZFA:0007115 ! pericardial region relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000362 name: hypaxialis namespace: zebrafish_anatomy def: "The hypaxialis consists of that part of the body musculature lying ventral to the midlateral horizontal septum." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-151106-17] xref: TAO:0000362 is_a: ZFA:0005145 ! muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000473 ! trunk musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000363 name: hypobranchial bone namespace: zebrafish_anatomy def: "Hypobranchials are the most medial of the bilaterally paired elements of the gill arches. Hypobranchial ossifications 1-3 (of 4) develop in the small hypobranchial cartilages that lie between the medial tips of the ceratobranchials and copula 2. The hypobranchials articulate anteromedially with the basibranchials." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "hypobranchial bones" EXACT PLURAL [] xref: TAO:0000363 is_a: ZFA:0001591 ! endochondral bone relationship: develops_from ZFA:0001522 ! hypobranchial cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000095 ! pharyngeal arch 3-7 skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000364 name: hypural namespace: zebrafish_anatomy def: "Expanded and laterally flattened hemal arches and spines. They support the lepidotrichia of the caudal fin. The hypurals form ventral to the posterior tip of the dorsally-flexed notochord. In zebrafish condensation of the hypurals begins at approximately 6 dpf (4.1 mm NL, notochord length)." [ZFIN:ZDB-PUB-011008-1] synonym: "hyp" EXACT [] synonym: "hypuralia" EXACT [] synonym: "hypurals" EXACT PLURAL [] xref: TAO:0000364 is_a: ZFA:0000859 ! specialized hemal arch and spine relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000036 ! Larval:Day 4 [Term] id: ZFA:0000365 name: nasal bone namespace: zebrafish_anatomy def: "Paired dermal bones, likened to a bone tube, positioned lateral to the supraethmoid. Nasal bones are transversed by the anterior most part of the supraorbital canals and bear one neuromast foramen in zebrafish." [ZFIN:ZDB-PUB-961014-192] synonym: "nasal bones" EXACT PLURAL [] xref: TAO:0000365 is_a: ZFA:0001590 ! dermal bone relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000351 ! olfactory region relationship: part_of ZFA:0000863 ! dermatocranium relationship: start ZFS:0000041 ! Larval:Days 21-29 [Term] id: ZFA:0000366 name: inferior raphe nucleus namespace: zebrafish_anatomy def: "Hindbrain nucleus that provides descending innervation to the brainstem and spinal cord. Early in development the inferior raphe nucleus emits rostrally and caudally directed projections. However, in the adult, the long projections inferior raphe nucleus are restricted to posterior." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-081114-19] synonym: "posterior raphe nucleus" EXACT [] xref: TAO:0000366 is_a: ZFA:0001658 ! hindbrain nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001429 ! raphe nucleus relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000367 name: infraorbital bridge namespace: zebrafish_anatomy is_obsolete: true consider: ZFA:0001410 [Term] id: ZFA:0000368 name: integument namespace: zebrafish_anatomy def: "The outer protective barrier that separates the animal from its aquatic environment." [ZFIN:ZDB-PUB-040726-12] synonym: "skin" EXACT [] xref: TAO:0000368 is_a: ZFA:0000292 ! surface structure relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0000369 name: intermandibularis namespace: zebrafish_anatomy def: "Is a mandibular muscle that develops into the ventral intermandibularis anterior and posterior muscles." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "intermandibular muscle" RELATED [ZFIN:ZDB-PUB-060921-12] xref: TAO:0000369 is_a: ZFA:0000236 ! mandibular muscle relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000370 name: intermediate thalamic nucleus namespace: zebrafish_anatomy synonym: "intermediate thalamic nuclei" EXACT PLURAL [] xref: TAO:0000370 is_a: ZFA:0005576 ! ventral thalamus nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000458 ! ventral thalamus relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000371 name: internal pharyngoclavicularis namespace: zebrafish_anatomy synonym: "internal pharyngoclavicularae" EXACT PLURAL [] xref: TAO:0000371 is_a: ZFA:0000172 ! branchial muscle relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000372 name: interpeduncular nucleus medulla oblongata namespace: zebrafish_anatomy xref: TAO:0000372 is_a: ZFA:0001658 ! hindbrain nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000373 name: juvenile namespace: zebrafish_anatomy is_obsolete: true consider: ZFS:0000042 consider: ZFS:0000043 [Term] id: ZFA:0000374 name: lagena namespace: zebrafish_anatomy def: "Otolith organ comprised of the macula lagena and asteriscus. The lagena is part of the pars inferior. The lagena functions in the detection of sound." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "lagenas" EXACT PLURAL [] xref: TAO:0000374 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000559 ! otolith organ relationship: part_of ZFA:0005410 ! pars inferior ear relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000375 name: last preural centrum namespace: zebrafish_anatomy is_obsolete: true consider: ZFA:0000557 consider: ZFA:0000586 consider: ZFA:0001583 [Term] id: ZFA:0000376 name: infraorbital namespace: zebrafish_anatomy alt_id: ZFA:0000489 def: "Dermal bone that is situated under or posterior to the eye and associated with the infraorbital sensory canal." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0000376 is_a: ZFA:0001590 ! dermal bone relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000863 ! dermatocranium relationship: part_of ZFA:0001410 ! orbital region relationship: start ZFS:0000040 ! Larval:Days 14-20 [Term] id: ZFA:0000379 name: lateral forebrain bundle diencephalon namespace: zebrafish_anatomy def: "Portion of the lateral forebrain bundle that lies in the diencephalon." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "lateral forebrain bundles diencephalon" EXACT PLURAL [] xref: TAO:0000379 is_a: ZFA:0000338 ! diencephalic white matter relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0007012 ! lateral forebrain bundle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000380 name: lateral lemniscus nucleus namespace: zebrafish_anatomy synonym: "lateral lemniscus nuclei" EXACT PLURAL [] xref: TAO:0000380 is_a: ZFA:0005577 ! tegmental nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000160 ! tegmentum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000381 name: lateral line sensory nucleus namespace: zebrafish_anatomy synonym: "lateral line sensory nuclei" EXACT PLURAL [] xref: TAO:0000381 is_a: ZFA:0001658 ! hindbrain nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000382 name: acellular anatomical structure namespace: zebrafish_anatomy def: "Anatomical structure that consists of cell parts and cell substances and together does not constitute a cell or a tissue." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "acellular anatomical structures" EXACT PLURAL [] xref: CARO:0000040 xref: TAO:0000382 is_a: ZFA:0000037 ! anatomical structure relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000001 ! Zygote:1-cell [Term] id: ZFA:0000383 name: lateral rectus namespace: zebrafish_anatomy def: "Extraocular muscle that runs parallel to the long axis of the fish and inserts on the caudal side of the eye at the sclera-corneal . The lateral rectus muscles originate substantially posterior to the other rectus muscles. The lateral rectus is innervated by the abducens nerve. The unsegmented paraxial head mesoderm contributes to the lateral rectus." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-111205-9] comment: Mature form at Hatching:Pec-fin. synonym: "lateral recti" EXACT PLURAL [] synonym: "posterior rectus" EXACT [ZFIN:ZDB-PUB-970121-6] xref: TAO:0000383 is_a: ZFA:0005145 ! muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000511 ! extraocular musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000384 name: levator arcus palatini namespace: zebrafish_anatomy def: "Mandibular muscle that inserts along the dorsolateral faces of the hyosymplectics." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-020703-2] synonym: "levators arcus palatini" EXACT PLURAL [] xref: TAO:0000384 is_a: ZFA:0000236 ! mandibular muscle relationship: develops_from ZFA:0007050 ! constrictor dorsalis relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0000385 name: lymphatic system namespace: zebrafish_anatomy def: "The lymphatic system consists of blind-ended vessels, fluid and macromolecules collected from interstitial tissue space that serve as a conduit for the development and transport of lymphoid cells." [ZFIN:ZDB-PUB-130322-28] xref: TAO:0000385 is_a: ZFA:0001439 ! anatomical system relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000010 ! cardiovascular system relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000386 name: macula namespace: zebrafish_anatomy def: "Portion of tissue that is a patch of thickened, pseudostratified epithelium in the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own characteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "maculae" EXACT PLURAL [] synonym: "sensory macula" EXACT [] synonym: "sensory patch" EXACT [] xref: TAO:0000386 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000217 ! inner ear relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000387 name: motor nucleus of vagal nerve namespace: zebrafish_anatomy comment: This term split from vagal lobe. Merged before 1996. synonym: "motor nucleus of X" EXACT [] synonym: "motor nucleus X" EXACT [] synonym: "nucleus motorius of nervi vagi" EXACT [] synonym: "nX" EXACT [] synonym: "vagal lobe" RELATED [] is_a: ZFA:0001658 ! hindbrain nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000297 ! vagal lobe relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000388 name: medial caudal lobe namespace: zebrafish_anatomy def: "Brain structure which is part of the vestibulolateralis lobe of the cerebellum. The medial caudal lobe receives primary octaval (presumably vestibular) as well as lateral line projections. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "caudal lobe of cerebellum" EXACT [] synonym: "lobus caudalis cerebelli" EXACT [] xref: TAO:0000388 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000307 ! vestibulolateralis lobe relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000389 name: medial funicular nucleus medulla oblongata namespace: zebrafish_anatomy xref: TAO:0000389 is_a: ZFA:0001658 ! hindbrain nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000390 name: medial preglomerular nucleus namespace: zebrafish_anatomy def: "Preglomerular nucleus which is located between the lateral and caudal preglomerular nuclei of the caudal tuberculum. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "medial preglomerular nuclei" EXACT PLURAL [] xref: TAO:0000390 is_a: ZFA:0001662 ! preglomerular nucleus relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000391 name: medial zone of dorsal telencephalon namespace: zebrafish_anatomy def: "Telencephalic nucleus which is medially located and surrounds the central zone of dorsal telencephalon. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "area dorsalis telencephali, zona medialis" EXACT [] synonym: "Dm" EXACT [ZFIN:ZDB-PUB-150226-6] synonym: "medial zone of D" EXACT [] synonym: "medial zone of dorsal telencephalic area" EXACT [] xref: TAO:0000391 is_a: ZFA:0001660 ! telencephalic nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000505 ! dorsal telencephalon relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000392 name: median tuberal portion namespace: zebrafish_anatomy def: "Multi-tissue structure which is part of the hypothalamus and consists of caudal and ventral zones, and is separated from the dorsal hypothalamic zone by a deep ventral sulcus. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] xref: TAO:0000392 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000032 ! hypothalamus relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000393 name: mesenchyme namespace: zebrafish_anatomy def: "A mesh-like cell arrangement, less compact than an epithelium." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000393 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0000394 name: molecular layer corpus cerebelli namespace: zebrafish_anatomy def: "Portion of tissue which is the outermost layer of the corpus cerebelli and consists largely of axons and dendrites. Other cell types such as stellate and basket neurons are also found in the molecular layer." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0000394 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000188 ! corpus cerebelli relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000395 name: muscle pioneer somite 2 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 2." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "muscle pioneers somite 2" EXACT PLURAL [] xref: TAO:0000395 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000728 ! somite 2 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000396 name: nervous system namespace: zebrafish_anatomy def: "A regulatory system of the body that consists of neurons and neuroglial cells. The nervous system is divided into two parts, the central nervous system (CNS) and the peripheral nervous system (PNS)." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0000396 is_a: ZFA:0001439 ! anatomical system relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0000397 name: nucleus subglomerulosis namespace: zebrafish_anatomy def: "Diencephalic nucleus which is part of the caudal tuberculum. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] xref: TAO:0000397 is_a: ZFA:0001659 ! diencephalic nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000633 ! caudal tuberculum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000398 name: nucleus isthmi namespace: zebrafish_anatomy def: "The nucleus isthmi is a hindbrain nucleus located in the tegmentum of rhombomere 1 close to the secondary gustatory nucleus. It projects to and receives excitatory visual input from the ipsilateral optic tectum and the parvocellular and/or magnocellular superficial pretectal nucleus." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-100601-20] xref: TAO:0000398 is_a: ZFA:0001658 ! hindbrain nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000399 name: secondary gustatory nucleus trigeminal nucleus namespace: zebrafish_anatomy def: "Nucleus that lies rostral to the isthmic primary nucleus." [ZFIN:ZDB-PUB-961014-1280] synonym: "secondary gustatory nucleus trigeminal nuclei" EXACT PLURAL [] xref: TAO:0000399 is_a: ZFA:0000433 ! sensory trigeminal nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001101 ! gustatory system relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000400 name: occipital lateral line namespace: zebrafish_anatomy def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "supratemporal lateral line" EXACT [] xref: TAO:0000400 is_a: ZFA:0001469 ! lateral line relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001470 ! anterior lateral line relationship: start ZFS:0000036 ! Larval:Day 4 [Term] id: ZFA:0000401 name: octaval nerve sensory nucleus namespace: zebrafish_anatomy synonym: "cranial nerve VIII sensory nucleus" EXACT [] synonym: "octaval nerve sensory nuclei" EXACT PLURAL [] xref: TAO:0000401 is_a: ZFA:0001658 ! hindbrain nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000402 name: olfactory bulb namespace: zebrafish_anatomy def: "Brain structure which is the paired anteriormost part of the telencephalon and are connected to the telencephalon by two tracts carrying secondary olfactory fibers. From Neuroanatomy of the Zebrafish Brain. The olfactory bulb is a paired structure." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "bulbus olfactorius" EXACT [ZFIN:ZDB-PUB-961014-1280] synonym: "olfactory lobe" EXACT [] xref: TAO:0000402 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000079 ! telencephalon relationship: part_of ZFA:0001149 ! olfactory system relationship: start ZFS:0000032 ! Pharyngula:High-pec [Term] id: ZFA:0000403 name: ovary namespace: zebrafish_anatomy def: "Female reproductive organ. The ovary is a bilobed cavitated organ located ventral to the swim bladder." [GOC:cvs, GOC:mh, ISBN:0199638098, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-2244-7917] synonym: "ovaries" EXACT PLURAL [] xref: TAO:0000403 is_a: ZFA:0000413 ! gonad relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000303 ! female organism relationship: part_of ZFA:0001158 ! endocrine system relationship: start ZFS:0000041 ! Larval:Days 21-29 [Term] id: ZFA:0000404 name: paracommissural nucleus namespace: zebrafish_anatomy def: "Diencephalic nucleus that is part of the synencephalon and is located adjacent to the caudal commissure. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] xref: TAO:0000404 is_a: ZFA:0001659 ! diencephalic nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000293 ! synencephalon relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000405 name: cranial nerve III namespace: zebrafish_anatomy def: "Cranial nerve which innervates muscles of the ocular motor system. The oculomotor nerve innervates the inferior oblique, inferior rectus, medial rectus and superior rectus extraocular muscles." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-131119-12] synonym: "CN-III" EXACT [] synonym: "occulomotor" EXACT [] synonym: "oculomotor nerve" EXACT [] xref: TAO:0000405 is_a: ZFA:0000641 ! cranial nerve relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000160 ! tegmentum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000406 name: parvocellular superficial pretectal nucleus namespace: zebrafish_anatomy def: "Diencephalic nucleus that is part of the superficial pretectum. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "parvocellular superficial pretectal nuclei" EXACT PLURAL [] xref: TAO:0000406 is_a: ZFA:0001659 ! diencephalic nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000687 ! superficial pretectum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000407 name: pectoral girdle namespace: zebrafish_anatomy def: "Anatomical cluster of paired dermal and endochondral bones that attaches to the dorso-posterior part of the cranium, and support the radials and pectoral fin. It consists of two components: the primary pectoral girdle consisting of the endochondral coracoid, scapula and mesocoracoid bones, and the secondary pectoral girdle consisting of the dermal posttemporal, supracleithrum, cleithrum and poscleithrum(thra) bones." [TAO:WD] synonym: "pectoral girdles" EXACT PLURAL [] xref: TAO:0000407 is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000943 ! pectoral fin skeleton relationship: start ZFS:0000032 ! Pharyngula:High-pec [Term] id: ZFA:0000408 name: periventricular nucleus of caudal tuberculum namespace: zebrafish_anatomy def: "Diencephalic nucleus which is located between the ventral thalamus and the hypothalamus. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "periventricular nucleus of posterior tuberculum" EXACT [] xref: TAO:0000408 is_a: ZFA:0001659 ! diencephalic nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000633 ! caudal tuberculum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000410 name: postcleithrum namespace: zebrafish_anatomy def: "Dermal bone that is part of the pectoral girdle and located ventral to the supracleithrum and posterior to the cleithrum. Postcleithral bones are paired and can vary up in number from a single pair (such as in zebrafish) to three pairs in other teleosts." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "postcleithra" EXACT PLURAL [] xref: TAO:0000410 is_a: ZFA:0001590 ! dermal bone relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000407 ! pectoral girdle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000411 name: posterior crista primordium namespace: zebrafish_anatomy def: "Is an otic epithelium that will mature into the posterior crista." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "posterior crista primordia" EXACT PLURAL [] xref: TAO:0000411 is_a: ZFA:0007068 ! otic epithelium relationship: end ZFS:0000035 ! Larval:Protruding-mouth relationship: part_of ZFA:0000262 ! posterior semicircular canal relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0000412 name: otic vesicle posterior protrusion namespace: zebrafish_anatomy def: "Otic vesicle protrusion that is anteriorly located and gives rise to the pillar of the posterior semicircular canal." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-090330-11] synonym: "posterior semicircular canal primordia" RELATED PLURAL [] synonym: "posterior semicircular canal primordium" RELATED [] xref: TAO:0000412 is_a: ZFA:0001715 ! otic vesicle protrusion relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000032 ! Pharyngula:High-pec [Term] id: ZFA:0000413 name: gonad namespace: zebrafish_anatomy def: "The part of the reproductive system that produces and releases eggs (ovary) or sperm (testis)." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "gonads" EXACT PLURAL [] synonym: "mature gonad" RELATED [] xref: TAO:0000413 is_a: ZFA:0001490 ! cavitated compound organ relationship: develops_from ZFA:0005272 ! immature gonad relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000632 ! reproductive system relationship: part_of ZFA:0007116 ! pleuroperitoneal region relationship: start ZFS:0000041 ! Larval:Days 21-29 [Term] id: ZFA:0000414 name: presumptive cephalic mesoderm namespace: zebrafish_anatomy def: "Embryonic structure that is fated to become cephalic mesoderm." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] xref: TAO:0000414 is_a: ZFA:0001105 ! embryonic structure relationship: end ZFS:0000024 ! Segmentation:5-9 somites relationship: part_of ZFA:0000041 ! mesoderm relationship: start ZFS:0000020 ! Gastrula:75%-epiboly [Term] id: ZFA:0000415 name: esophageal sphincter namespace: zebrafish_anatomy def: "Sphincter at the junction of the esophagus and pneumatic duct." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] synonym: "oesophagial sphincter" EXACT [] xref: TAO:0000415 is_a: ZFA:0000172 ! branchial muscle relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000416 name: presumptive endoderm namespace: zebrafish_anatomy def: "Presumptive structure fated to become endoderm. Determined by fate mapping." [ZFIN:ZDB-PUB-961014-608] xref: TAO:0000416 is_a: ZFA:0001116 ! presumptive structure relationship: end ZFS:0000019 ! Gastrula:Shield relationship: start ZFS:0000014 ! Blastula:Sphere [Term] id: ZFA:0000417 name: presumptive spinal cord namespace: zebrafish_anatomy def: "Embryonic structure part of the posterior presumptive neural plate that is fated to become the spinal cord." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] synonym: "presumptive spinal cord neural keel" EXACT [] synonym: "presumptive spinal cord neural plate" EXACT [] synonym: "presumptive spinal cord neural rod" EXACT [] xref: TAO:0000417 is_a: ZFA:0001105 ! embryonic structure relationship: end ZFS:0000020 ! Gastrula:75%-epiboly relationship: part_of ZFA:0007015 ! posterior presumptive neural plate relationship: start ZFS:0000019 ! Gastrula:Shield [Term] id: ZFA:0000418 name: pretectum namespace: zebrafish_anatomy def: "Multi-tissue structure that is the dorsal part of the diencephalon, caudal to the telencephalon, rostral to the midbrain optic tectum; the major sensory input to the pretectum is visual. From The Laboratory Fish." [GOC:mh, ISBN:0125296509, ORCiD:0000-0001-9114-8737] xref: TAO:0000418 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000101 ! diencephalon relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000419 name: pterosphenoid namespace: zebrafish_anatomy def: "Paired cartilage bones, flat and hexagonal in shape that contact the orbitosphenoid anteriorly. Roofed by the frontal and bordered posteriorly by the prootic and sphenotic, the pterosphenoid bears foramina that accommodate branches of the trigeminal and facial nerves." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "pterosphenoids" EXACT PLURAL [] xref: TAO:0000419 is_a: ZFA:0001591 ! endochondral bone relationship: develops_from ZFA:0001515 ! taenia marginalis posterior relationship: end ZFS:0000044 ! Adult relationship: overlaps ZFA:0005482 ! prootic-pterosphenoid joint relationship: overlaps ZFA:0005560 ! parasphenoid-basioccipital joint relationship: part_of ZFA:0000290 ! sphenoid region relationship: part_of ZFA:0001424 ! chondrocranium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000420 name: renal artery namespace: zebrafish_anatomy synonym: "renal arteries" EXACT PLURAL [] xref: TAO:0000420 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000421 name: reticular formation namespace: zebrafish_anatomy def: "Reticular formation is a complex network of neurons and diffuse nuclei that extends from the spinal cord centrally along the length of the brain to the mesencephalon. It s a dense, almost impenetrable network of seemingly random scattered nerve cells. The reticular formation integrates sensory inputs." [ISBN:0865777101] xref: TAO:0000421 is_a: ZFA:0001512 ! anatomical group relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000422 name: retroarticular namespace: zebrafish_anatomy def: "The retroarticular is a cartilage bone that forms at the posteroventral tip of Meckel's cartilage where the interoperculomandibular ligament attaches (5.1 mm NL). In the adult it is basically triangular in shape. The retroarticular is ligamentously connected to the interopercle and preopercle posteriorly and abuts the ventral shelf of the dentary anteriorly." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "retroarticulars" EXACT PLURAL [] xref: TAO:0000422 is_a: ZFA:0001591 ! endochondral bone relationship: develops_from ZFA:0005904 ! retroarticular process relationship: end ZFS:0000044 ! Adult relationship: overlaps ZFA:0005618 ! anguloarticular-retroarticular joint relationship: part_of ZFA:0001273 ! ventral mandibular arch relationship: start ZFS:0000037 ! Larval:Day 5 [Term] id: ZFA:0000423 name: anterior cardinal vein namespace: zebrafish_anatomy def: "Vein that joins with the posterior cardinal vein to form the common cardinal vein. The anterior cardinal vein (ACV) connects to the primordial hindbrain channel at early stages. At later stages the posterior cerebral vein (PCeV) and the pectoral vein (PV) drain into ACV. The rostral portion of the ACV connects to the primary head sinus (PHS) at 2.5dpf, the PHS is sometimes considered an extension of the ACV." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5] synonym: "ACV" EXACT [] synonym: "rostral cardinal vein" EXACT [] xref: TAO:0000423 is_a: ZFA:0000082 ! vein relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000096 ! cardinal system relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000424 name: opercular lateral line namespace: zebrafish_anatomy def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "opercular lateral lines" EXACT PLURAL [] xref: TAO:0000424 is_a: ZFA:0001469 ! lateral line relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001470 ! anterior lateral line relationship: start ZFS:0000035 ! Larval:Protruding-mouth [Term] id: ZFA:0000425 name: anterior lateral line nerve namespace: zebrafish_anatomy def: "Cranial nerve which enters the brain between cranial nerves VI and VII and projects to a dorsal medullary area between cerebellum and vagal lobe. Contains afferents and sensory efferents to the anterior lateral line ganglia. From Neuroanatomy of the Zebrafish Brain." [GOC:ymb, ISBN:3764351209, ORCiD:0000-0002-9900-7880] synonym: "ALLn" EXACT [] synonym: "nervi lineae lateralis anterioris" EXACT [] synonym: "rostral lateral line nerve" EXACT [] xref: TAO:0000425 is_a: ZFA:0000641 ! cranial nerve is_a: ZFA:0001479 ! lateral line nerve relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001468 ! anterior lateral line system relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000426 name: rostral parvocellular preoptic nucleus namespace: zebrafish_anatomy def: "Diencephalic nucleus that is part of the preoptic area and is the anterior continuation of the caudal parvocellular preoptic nucleus and is ventral to the telencephalon. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "anterior parvocellular preoptic nucleus" EXACT [] synonym: "rostral parvocellular preoptic nuclei" EXACT PLURAL [] xref: TAO:0000426 is_a: ZFA:0001680 ! parvocellular preoptic nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000470 ! preoptic area relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000427 name: rostral thalamic nucleus namespace: zebrafish_anatomy def: "Diencephalic nucleus which is located in the anterior portion of the dorsal thalamus." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "anterior thalamic nucleus" EXACT [] synonym: "nucleus anterior thalami" EXACT [] xref: TAO:0000427 is_a: ZFA:0001659 ! diencephalic nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000653 ! dorsal thalamus relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000428 name: saccule namespace: zebrafish_anatomy def: "Otolith organ comprised of the macula saccule and sagitta. The lagena is part of the pars inferior. The saccule functions in the detection of sound and movement." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "sacculus" EXACT [] xref: TAO:0000428 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000559 ! otolith organ relationship: part_of ZFA:0005410 ! pars inferior ear relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000429 name: scaphium namespace: zebrafish_anatomy def: "The scaphium is a modification of NA 1 in which the neural arch is reduced and fused to a cup-shaped ossification of membrane bone, the concha. The second Weberian ossicle, consisting of three parts: the concha, the ascending process, and the articulating process." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0000429 is_a: ZFA:0001066 ! neural arch relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000461 ! Weberian ossicle relationship: part_of ZFA:0001167 ! vertebra 1 relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0000430 name: secondary gustatory tract namespace: zebrafish_anatomy def: "White matter connecting the primary gustatory nuclei to the secondary gustatory nucleus in the isthmus." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-1280] xref: TAO:0000430 is_a: ZFA:0001682 ! white matter relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: part_of ZFA:0001101 ! gustatory system relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000431 name: semicircular canal namespace: zebrafish_anatomy def: "Fluid-filled semicircular tubes, arranged orthogonally to each other in the inner ear. Each canal is associated with a crista that detects angular accelerations. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "scc" EXACT [] synonym: "semicircular canals" EXACT PLURAL [] synonym: "semicircular duct" EXACT [] xref: TAO:0000431 is_a: ZFA:0007114 ! anatomical conduit relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005409 ! pars superior ear relationship: start ZFS:0000032 ! Pharyngula:High-pec [Term] id: ZFA:0000433 name: sensory trigeminal nucleus namespace: zebrafish_anatomy synonym: "NVs" RELATED [] synonym: "sensory trigeminal nuclei" EXACT PLURAL [] xref: TAO:0000433 is_a: ZFA:0001658 ! hindbrain nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000434 name: skeletal system namespace: zebrafish_anatomy xref: TAO:0000434 is_a: ZFA:0001439 ! anatomical system relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000435 name: cranial nerve II namespace: zebrafish_anatomy def: "Cranial nerve which is comprised of retinal ganglion cell axons running posterior medially towards the optic chiasm, at which the axons cross the midline and after which the structure is termed the optic tract." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "CN-II" EXACT [] synonym: "optic" EXACT [] synonym: "optic nerve" EXACT [] xref: TAO:0000435 is_a: ZFA:0000641 ! cranial nerve relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000338 ! diencephalic white matter relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0000436 name: spleen namespace: zebrafish_anatomy def: "Organ that filters the blood removing defective blood cells. The spleen is a dark red organ, located in the peritoneal cavity, adjacent to one of the liver lobes. The spleen consists of red pulp composed of erythrocytes and thrombocytes and white pulp, composed of macrophages, reticular cells and reticulin fibers." [ZFIN:ZDB-PUB-110609-55] xref: TAO:0000436 is_a: ZFA:0000496 ! compound organ relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001159 ! immune system relationship: part_of ZFA:0005023 ! hematopoietic system relationship: part_of ZFA:0007116 ! pleuroperitoneal region relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000437 name: stomach namespace: zebrafish_anatomy xref: TAO:0002121 is_obsolete: true consider: ZFA:0001076 [Term] id: ZFA:0000438 name: parhypural namespace: zebrafish_anatomy alt_id: ZFA:0000562 def: "Hemal arch and spine of preural centrum 1. The parhypural is defined as the most posterior hemal arch with an open canal through which the dorsal aorta passes." [ZFIN:ZDB-PUB-011008-1] synonym: "parhyural" EXACT [] synonym: "phy" EXACT [] xref: TAO:0000438 is_a: ZFA:0000859 ! specialized hemal arch and spine relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000557 ! preural 1 vertebra relationship: start ZFS:0000037 ! Larval:Day 5 [Term] id: ZFA:0000439 name: superficial pelvic abductor namespace: zebrafish_anatomy def: "Ventral, superficial, paired muscle that originates from the posterior part of the protractor ishii tendon and the midline. At the midline the paired muscles contact each other. These are short muscles that attach to all pelvic fin rays except ray 1 and ray 2." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-171118-8] synonym: "abductor superficialis pelvicus" EXACT [ZFIN:ZDB-PUB-171118-8] synonym: "superficial pelvic abductors" EXACT PLURAL [] xref: TAO:0000439 is_a: ZFA:0005269 ! abductor muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000258 ! pelvic fin musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000440 name: superior raphe nucleus namespace: zebrafish_anatomy def: "Hindbrain nucleus that is located in ventral rhombomeres 1-3 and gives rise to ascending fibers innervating most areas of the brain. Early in development, both the superior raphe nucleus emits rostrally and caudally directed projections. However, in the adult, the long projections of superior raphe nucleus restricted to anterior." [ZFIN:ZDB-PUB-081114-19] comment: May be homologous to the dorsal raphe nucleus of human mouse and rat. ZDB-PUB-081008-18. synonym: "anterior raphe nucleus" EXACT [] synonym: "dorsal raphe nucleus" RELATED [] xref: TAO:0000440 is_a: ZFA:0001658 ! hindbrain nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001429 ! raphe nucleus relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000441 name: suprachiasmatic nucleus namespace: zebrafish_anatomy def: "Diencephalic nucleus that is part of the preoptic area and is ventrolateral to the caudal parvocellular preoptic nucleus. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] xref: TAO:0000441 is_a: ZFA:0001659 ! diencephalic nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000470 ! preoptic area relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000442 name: supraneural namespace: zebrafish_anatomy def: "Supraneurals independent, median, elongate, rod-like cartilages or bones in the dorsal skeletogenous septum between the cranium and the dorsal fin. In actinopterygians, supraneurals develop from cartilages that are independent of the neural spine (Arratia et al., 2001)." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "sn" EXACT [] xref: TAO:0000442 is_a: ZFA:0001591 ! endochondral bone relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000317 ! postcranial axial skeleton relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0000443 name: supraorbital lateral line namespace: zebrafish_anatomy def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "supraorbital lateral lines" EXACT PLURAL [] synonym: "supraorbital line" EXACT [ZFIN:ZDB-PUB-000523-3] xref: TAO:0000443 is_a: ZFA:0001469 ! lateral line relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001470 ! anterior lateral line relationship: start ZFS:0000031 ! Pharyngula:Prim-25 [Term] id: ZFA:0000444 name: suspensorium namespace: zebrafish_anatomy synonym: "hyopalatine" EXACT [] synonym: "suspensoria" EXACT [] xref: TAO:0000444 is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001216 ! splanchnocranium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000445 name: optic tectum namespace: zebrafish_anatomy alt_id: ZFA:0001353 def: "Multi-tissue structure that is the dorsal part of the midbrain and develops from the alar plate and is the most complex layered structure in the zebrafish brain." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "dorsal midbrain" EXACT [] synonym: "mesencephalic tectum" EXACT [] synonym: "tectal lobe" EXACT [] synonym: "tectum" EXACT [ZFIN:ZDB-PUB-961014-576] synonym: "tectum opticum" EXACT [ZFIN:ZDB-PUB-961014-1280] xref: TAO:0000445 is_a: ZFA:0001488 ! multi-tissue structure relationship: develops_from ZFA:0001357 ! alar plate midbrain region relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000128 ! midbrain relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000446 name: tecto-bulbar tract namespace: zebrafish_anatomy xref: TAO:0000446 is_a: ZFA:0000318 ! brainstem and spinal white matter relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000447 name: tela chorioidea namespace: zebrafish_anatomy def: "Portion of tissue that is part of the primitive meninx which forms a fold, roofing a ventricle of the brain and supporting the choroid plexus." [ISBN:0030223695, ISBN:0683014617] synonym: "tela choroidea" RELATED [] xref: TAO:0000447 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001355 ! primitive meninx relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000448 name: tertiary gustatory nucleus namespace: zebrafish_anatomy def: "Diencephalic nucleus which is located ventral to the medial preglomerular nucleus in the caudal tuberculum. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] xref: TAO:0000448 is_a: ZFA:0001659 ! diencephalic nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000633 ! caudal tuberculum relationship: part_of ZFA:0001101 ! gustatory system relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000449 name: torus longitudinalis namespace: zebrafish_anatomy def: "Multi-tissue structure that is a paired longitudinal eminence of granular cells that develops from the alar plate and is attached to the tegmentum in the medial tectal ventricle. The torus longitudinalis only occurs in ray finned fishes." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "longitudinal torus" EXACT [] synonym: "tori longitudinalis" EXACT PLURAL [] xref: TAO:0000449 is_a: ZFA:0001488 ! multi-tissue structure relationship: develops_from ZFA:0001357 ! alar plate midbrain region relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000128 ! midbrain relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000450 name: trochlear motor nucleus namespace: zebrafish_anatomy synonym: "motor nucleus IV" EXACT [] synonym: "nIV" EXACT [] xref: TAO:0000450 is_a: ZFA:0005577 ! tegmental nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000160 ! tegmentum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000451 name: upper oral valve namespace: zebrafish_anatomy def: "Portion of tissue, located on the upper jaw that defines the caudal extent of the labial cavity. The oral valves control the flow of water into the mouth during routine respiration." [ZFIN:ZDB-PUB-060921-12] synonym: "breathing valve" RELATED [] synonym: "buccal valve" RELATED [] synonym: "maxillary valve " EXACT [] synonym: "upper internal lip" RELATED [ZFIN:ZDB-PUB-060921-12] synonym: "upper semilunar valve " EXACT [ZFIN:ZDB-PUB-060921-12] xref: TAO:0000451 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000590 ! oral region relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000452 name: urohyal namespace: zebrafish_anatomy def: "The urohyal is a median dermal bone that ossifies in the membrane between the paired sternohyoideus muscles ventral to the anterior end of copula 1. It is an unpaired ossification of the tendon of the sternohyoideos muscles in basal teleosts, and it is paired in catfishes (Arratia and Schultze, 1990)." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0000452 is_a: ZFA:0001590 ! dermal bone relationship: end ZFS:0000044 ! Adult relationship: overlaps ZFA:0005457 ! dorsal hypohyal-urohyal joint relationship: part_of ZFA:0000863 ! dermatocranium relationship: part_of ZFA:0001402 ! ventral hyoid arch relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000453 name: cranial nerve X namespace: zebrafish_anatomy def: "Cranial nerve that innervates gill muscles." [ZFIN:ZDB-PUB-040109-20] synonym: "CN-X" EXACT [] synonym: "vagal nerve" EXACT [] synonym: "vagus nerve" EXACT [] xref: TAO:0000453 is_a: ZFA:0000641 ! cranial nerve relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001101 ! gustatory system relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000454 name: ventral accessory optic nucleus namespace: zebrafish_anatomy def: "Diencephalic nucleus that is part of the central pretectum and is ventromedial to the magnocellular superficial pretectal nucleus and the caudal pretectal nucleus. The ventral accessory optic nucleus is very large in zebrafish as compared to other cyprinids. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] xref: TAO:0000454 is_a: ZFA:0001659 ! diencephalic nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000183 ! central pretectum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000455 name: superior caudal ventral flexor namespace: zebrafish_anatomy def: "Paired, deep caudal fin muscles that originate from the 30th vertebra then project from the vertebral column to the ventral base of the caudal fin where they attach broadly to ventral caudal fin rays." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-060623-21] synonym: "CVS" RELATED [] synonym: "flexor caudalis ventralis superioris" EXACT [] synonym: "ventral flexor" RELATED [] xref: TAO:0000455 is_a: ZFA:0005271 ! flexor muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005819 ! deep caudal fin musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000456 name: ventral nucleus of ventral telencephalon namespace: zebrafish_anatomy def: "Periventricular nucleus which lies rostral to the anterior commissure of the ventral telencephalon. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "area ventralis telencephali, nucleus ventralis" EXACT [] synonym: "ventral division of ventral telencephalic area" RELATED [] synonym: "ventral nucleus of V" EXACT [] xref: TAO:0000456 is_a: ZFA:0001666 ! periventricular nucleus of ventral telencephalon relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000457 name: ventral rectus namespace: zebrafish_anatomy def: "Extraocular muscle that inserts at the scleral-corneal junction on the ventral side of the eye. The insertion point of the ventral oblique and the ventral rectus overlap in adult fish. The ventral rectus is innervated by the oculomotor nerve." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-111205-9] comment: Mature form at Larval:Protruding-mouth. synonym: "inferior rectus" EXACT [ZFIN:ZDB-PUB-110512-18] synonym: "ventral recti" EXACT PLURAL [] xref: TAO:0000457 is_a: ZFA:0005145 ! muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000511 ! extraocular musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000458 name: ventral thalamus namespace: zebrafish_anatomy synonym: "prethalamus" EXACT [ZFIN:ZDB-PUB-060207-11] xref: TAO:0000458 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001215 ! thalamus relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000459 name: ventromedial thalamic nucleus namespace: zebrafish_anatomy xref: TAO:0000459 is_a: ZFA:0005576 ! ventral thalamus nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000458 ! ventral thalamus relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000460 name: Mauthner axon namespace: zebrafish_anatomy comment: Part of axon so domain of GO celular component. is_obsolete: true [Term] id: ZFA:0000461 name: Weberian ossicle namespace: zebrafish_anatomy def: "A group of modified neural arches and spines of the first four vertebrae. These include, from anterior to posterior, the claustrum, scaphium, intercalarium, and tripus. The os suspensorium is considered to be a fifth ossicle." [ZFIN:ZDB-PUB-011008-1] synonym: "Weberian ossicles" EXACT PLURAL [] xref: TAO:0000461 is_a: ZFA:0001491 ! solid compound organ relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001188 ! Weberian apparatus relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0000462 name: abductor hyohyoid namespace: zebrafish_anatomy def: "Hyoid muscle that originates at the first branchiostegal ray and inserts in the mesial aponeurosis, meeting its contralateral counterpart. The abductor hyohyoid is responsible for expansion of the branchiostegal membrane." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-080306-33] synonym: "abductors hyohyoid" EXACT PLURAL [] synonym: "hyohyoideus abductor" EXACT [] xref: TAO:0000462 is_a: ZFA:0000521 ! hyoid muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0007052 ! hyohyoideus relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000463 name: adductor namespace: zebrafish_anatomy synonym: "adductors" EXACT PLURAL [] xref: TAO:0000463 is_a: ZFA:0000172 ! branchial muscle relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000464 name: otic lateral line namespace: zebrafish_anatomy def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "otic lateral lines" EXACT PLURAL [] xref: TAO:0000464 is_a: ZFA:0001469 ! lateral line relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001470 ! anterior lateral line relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0000465 name: adductor operculi namespace: zebrafish_anatomy def: "Is a dorsal, paired hyoid muscle that moves the auditory capsules with the opercles." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-020703-2] synonym: "adductor opercula" EXACT [] synonym: "adductor operculae" EXACT PLURAL [] xref: TAO:0000465 is_a: ZFA:0000521 ! hyoid muscle relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000034 ! Hatching:Pec-fin [Term] id: ZFA:0000466 name: anal depressor namespace: zebrafish_anatomy def: "Series of muscles that have an anterior attachment at posteriorlateral base of each ray and posterior attachment at the haemal spines. These muscles act in opposition to the anal erectors to lower the anal fin rays." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-171118-8] synonym: "anal depressors" EXACT PLURAL [] synonym: "depressores anales" RELATED [ZFIN:ZDB-PUB-171118-8] xref: TAO:0000466 is_a: ZFA:0005270 ! depressor muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001154 ! anal fin musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000467 name: anguloarticular namespace: zebrafish_anatomy def: "Dermal and endochondral compound bone that results from the fusion of the dermal angular and the endochondral articular and forms the posterior part of the lower jaw. It articulates with the dentary anteriorly and with the retroarticular postero-medially. The anguloarticular is paired." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-192] synonym: "articular" EXACT [] xref: TAO:0000467 is_a: ZFA:0001590 ! dermal bone is_a: ZFA:0001591 ! endochondral bone relationship: develops_from ZFA:0001644 ! articular cartilage relationship: develops_from ZFA:0001645 ! angular bone relationship: end ZFS:0000044 ! Adult relationship: overlaps ZFA:0005618 ! anguloarticular-retroarticular joint relationship: part_of ZFA:0000863 ! dermatocranium relationship: part_of ZFA:0001273 ! ventral mandibular arch relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000468 name: anterior crista primordium namespace: zebrafish_anatomy def: "Is an otic epithelium that will mature into the anterior crista." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "anterior crista primordia" EXACT PLURAL [] xref: TAO:0000468 is_a: ZFA:0007068 ! otic epithelium relationship: end ZFS:0000035 ! Larval:Protruding-mouth relationship: part_of ZFA:0000314 ! anterior semicircular canal relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0000469 name: otic vesicle anterior protrusion namespace: zebrafish_anatomy def: "Otic vesicle protrusion that is anteriorly located and gives rise to the pillar of the anterior semicircular canal." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-090330-11] synonym: "anterior semicircular canal primordia" RELATED PLURAL [] synonym: "anterior semicircular canal primordium" RELATED [] xref: TAO:0000469 is_a: ZFA:0001715 ! otic vesicle protrusion relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000032 ! Pharyngula:High-pec [Term] id: ZFA:0000470 name: preoptic area namespace: zebrafish_anatomy def: "Area of the forebrain anterior to the posterior tuberculum and the hypothalamus and ventral to the ventral thalamus. See Figure 7, p. 34 in Atlas of Early Zebrafish Brain Development." [GOC:mh, ISBN:0444517383, ORCiD:0000-0001-9114-8737] synonym: "area praeoptica" EXACT [] synonym: "area preoptica" EXACT [] synonym: "preoptic region" EXACT [] xref: TAO:0000470 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000101 ! diencephalon relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000471 name: atrium namespace: zebrafish_anatomy def: "Cavitated compound organ that receives inflow of deoxygenated blood and delivers it to a muscular cardiac ventricle. Valves are present to direct flow. There are only two chambers present in the fish heart." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-020122-4] xref: TAO:0000471 is_a: ZFA:0001490 ! cavitated compound organ relationship: develops_from ZFA:0001718 ! presumptive atrium heart tube relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000114 ! heart relationship: start ZFS:0000032 ! Pharyngula:High-pec [Term] id: ZFA:0000472 name: basioccipital namespace: zebrafish_anatomy def: "Large median unpaired cartilage bone that contacts the exoccipital, epiotic and pterotic dorsally, and the parasphenoid anteriorly. Forms the posteroventral hind margin of the cranium, articulates with the centrum of the first vertebra. Bears a posteroventral pharyngeal process that is flattened ventrally and opposes the pharyngeal teeth of the fifth pair of ceratobranchials." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0000472 is_a: ZFA:0001591 ! endochondral bone relationship: develops_from ZFA:0001423 ! parachordal cartilage relationship: end ZFS:0000044 ! Adult relationship: overlaps ZFA:0005423 ! basioccipital-exoccipital joint relationship: overlaps ZFA:0005560 ! parasphenoid-basioccipital joint relationship: overlaps ZFA:0005613 ! basioccipital-prootic joint relationship: part_of ZFA:0001414 ! occipital region relationship: part_of ZFA:0001424 ! chondrocranium relationship: part_of ZFA:0001580 ! neurocranium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000473 name: trunk musculature namespace: zebrafish_anatomy def: "Muscle system in the trunk." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "body musculature" EXACT [] xref: TAO:0000473 is_a: ZFA:0000548 ! musculature system relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0000474 name: intercalar namespace: zebrafish_anatomy def: "Small membrane bone homologous with a cartilage bone in more basal fishes (Patterson, 1977). Situated between the exoccipital and the pterotic at point of attachment of short ligament that originates on the ventral arm of the posttemporal." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "opisthotic" EXACT [] xref: TAO:0000474 is_a: ZFA:0001636 ! membrane bone relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000189 ! otic region relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000475 name: paraventricular organ namespace: zebrafish_anatomy def: "Diencephalic nucleus which is located anterior to the caudal tuberal nucleus and contains tyrosine hydroxylase immunoreactive CSF contacting bipolar cells." [ZFIN:ZDB-PUB-001220-2] synonym: "PVO" EXACT [] xref: TAO:0000475 is_a: ZFA:0001659 ! diencephalic nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000633 ! caudal tuberculum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000476 name: branchiostegal ray namespace: zebrafish_anatomy def: "Dermal bone that is a bilaterally paired and flattened element that supports the branchiostegal membrane. Three dermal branchiostegal rays form in the branchiostegal membrane ventral to the ceratohyal cartilage. The most posterior ray, branchiostegal 3, ossifies first (3.4 mm NL), and the most anterior ray, branchiostegal 1, ossifies last (5.5 mm NL). The most posterior two branchiostegals (2 and 3) insert externally on the ceratohyal; their anterodorsal tips are thickened triangles, and the rays are expanded. The bifurcated tip of the acinaciform anteriormost ray lies at the ventral margin of the ceratohyal." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "branchiostegal rays" EXACT PLURAL [] xref: TAO:0000476 is_a: ZFA:0001590 ! dermal bone relationship: end ZFS:0000044 ! Adult relationship: overlaps ZFA:0005465 ! ceratohyal-branchiostegal ray joint relationship: overlaps ZFA:0005498 ! epihyal-branchiostegal ray joint relationship: part_of ZFA:0000863 ! dermatocranium relationship: part_of ZFA:0001402 ! ventral hyoid arch relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000477 name: posterior cardinal vein namespace: zebrafish_anatomy def: "Continuation of the caudal vein cranial to the anal pore. The cardinal vein splits into a pair of vessels in the cranial trunk, just caudal to the radix of the aorta. The posterior cardinals each empty into the common cardinal vein." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "axial vein" EXACT [] synonym: "caudal cardinal veins" EXACT [] synonym: "PCV" EXACT [] synonym: "postcardinal vein" EXACT [] xref: TAO:0000477 is_a: ZFA:0000082 ! vein relationship: develops_from ZFA:0005077 ! vascular cord relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000096 ! cardinal system relationship: part_of ZFA:0005024 ! trunk vasculature relationship: part_of ZFA:0005295 ! axial blood vessel relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000479 name: caudal mesencephalo-cerebellar tract namespace: zebrafish_anatomy def: "Brainstem tract which carries cerebellar afferents from the dorsal tegmental nucleus and nucleus lateralis valvulae. Fuses with the rostral mesencephalo-cerebellar tract upon entering the cerebellum. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "posterior mesencephalo-cerebellar tract" EXACT [] xref: TAO:0000479 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000643 ! rostral cerebellar tract relationship: part_of ZFA:0001707 ! brainstem relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000480 name: caudal octavolateralis nucleus namespace: zebrafish_anatomy def: "Hindbrain nucleus which is part of the medulla oblongata and is a mechanoreceptive area along with the medial octavolateralis nucleus. It is smaller than the medial octavolateralis nucleus and is located lateral to the facial and vagal lobes of the medulla oblongata. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "nucleus octavolateralis caudalis" EXACT [] xref: TAO:0000480 is_a: ZFA:0000381 ! lateral line sensory nucleus relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000481 name: caudal preglomerular nucleus namespace: zebrafish_anatomy def: "Preglomerular nucleus which is the most caudomedial of the preglomerular nuclei of the caudal tuberculum. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "nucleus praeglomerulosus caudalis" EXACT [] xref: TAO:0000481 is_a: ZFA:0001662 ! preglomerular nucleus relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000482 name: caudal tuberal nucleus namespace: zebrafish_anatomy def: "Diencephalic nucleus which is located posterior to the paraventricular organ." [ZFIN:ZDB-PUB-001220-2] synonym: "posterior tuberal nucleus" EXACT [] xref: TAO:0000482 is_a: ZFA:0001659 ! diencephalic nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000633 ! caudal tuberculum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000484 name: celiacomesenteric artery namespace: zebrafish_anatomy synonym: "coeliac-mesenteric artery" EXACT [] xref: TAO:0000484 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000485 name: central nucleus inferior lobe namespace: zebrafish_anatomy def: "Diencephalic nucleus which is part of the inferior lobe of the hypothalamus and consists of masses of large cells presumably migrated from the periventricular cell masses and receives signals from the secondary gustatory nucleus. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "central nucleus inferior lobes" EXACT PLURAL [] synonym: "central nucleus of the inferior lobe" EXACT [] synonym: "nucleus centralis lobi inferioris hypothalami" EXACT [] xref: TAO:0000485 is_a: ZFA:0001659 ! diencephalic nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000165 ! inferior lobe relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000486 name: parietal bone namespace: zebrafish_anatomy def: "Paired dermal bone that covers the hind part of the cranium, overlapping the dorsal edge of the sphenotic, pterotic, epiotic and the anterior edge of the supraoccipital. The parietal are overlapped anteriorly by the frontal." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-111111-5] synonym: "post parietal" EXACT [] xref: TAO:0000486 is_a: ZFA:0001590 ! dermal bone relationship: end ZFS:0000044 ! Adult relationship: overlaps ZFA:0005607 ! inter-parietal joint relationship: overlaps ZFA:0005608 ! frontal-parietal joint relationship: overlaps ZFA:0005609 ! supraoccipital-parietal joint relationship: overlaps ZFA:0005891 ! epiotic-parietal joint relationship: part_of ZFA:0000189 ! otic region relationship: part_of ZFA:0000863 ! dermatocranium relationship: part_of ZFA:0001580 ! neurocranium relationship: part_of ZFA:0005606 ! cranial vault relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000487 name: central zone of dorsal telencephalon namespace: zebrafish_anatomy def: "Telencephalic nucleus which is centrally located and is surrounded by the other four dorsal telencephalic regions. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "area dorsalis telencephali, zona centralis" EXACT [] synonym: "central zone of D" EXACT [] synonym: "Dc" EXACT [ZFIN:ZDB-PUB-150226-6] xref: TAO:0000487 is_a: ZFA:0001660 ! telencephalic nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000505 ! dorsal telencephalon relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000488 name: ceratobranchial bone namespace: zebrafish_anatomy def: "Endochondral bone that is bilaterally paired and forms part of the ventral branchial arches. They articulate medially with the hypobranchials and laterally and dorsally with the epibranchials." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "ceratobranchial bones" EXACT PLURAL [] xref: TAO:0000488 is_a: ZFA:0001591 ! endochondral bone relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000095 ! pharyngeal arch 3-7 skeleton relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0000490 name: commissura cerebelli namespace: zebrafish_anatomy def: "Cerebellar commissure which is located within the ventral boundary zone between valvula and corpus cerebelli. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "cerebellar commissure" EXACT [] xref: TAO:0000490 is_a: ZFA:0001708 ! cerebellar white matter relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000491 name: commissure of the caudal tuberculum namespace: zebrafish_anatomy def: "Commissure in the ventral diencephalon that lies rostral to the ventral flexure and caudal of the posterior tuberal nucleus. Axons from the supraoptic tract extend across the hypothalamus and enter this commissure." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-1268] synonym: "commissura tuberculi posterioris" EXACT [] synonym: "commissure of the posterior tuberculum" EXACT [] synonym: "CPT" RELATED [ZFIN:ZDB-PUB-961014-1268] synonym: "Ctub" RELATED [ZFIN:ZDB-PUB-120424-30] xref: TAO:0000491 is_a: ZFA:0000338 ! diencephalic white matter relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000492 name: coracoradialis namespace: zebrafish_anatomy xref: TAO:0000492 is_a: ZFA:0005145 ! muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000563 ! pectoral fin musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000493 name: decussation of medial funicular nucleus namespace: zebrafish_anatomy xref: TAO:0000493 is_a: ZFA:0001682 ! white matter relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000494 name: deep white zone namespace: zebrafish_anatomy synonym: "deep white zones" EXACT PLURAL [] xref: TAO:0000494 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000445 ! optic tectum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000495 name: infraorbital 5 namespace: zebrafish_anatomy def: "Plate like dermal bone with usually only one neuromast pore (Nelson, 1969). The last infraorbital bone in the series is referred to as the dermosphenotic (Nelson, 1969). In basal teleosts it is usually the sixth bone in the series but in zebrafish it is the fifth bone." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "dermosphenotic" EXACT [] xref: TAO:0000495 is_a: ZFA:0000376 ! infraorbital relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001649 ! infraorbital series relationship: start ZFS:0000042 ! Juvenile:Days 30-44 [Term] id: ZFA:0000496 name: compound organ namespace: zebrafish_anatomy def: "Anatomical structure that has as its parts two or more multi-tissue structures of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona fide boundaries from other distinct anatomical structures of different types." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "organ" EXACT [] xref: CARO:0000024 xref: TAO:0000496 is_a: ZFA:0000037 ! anatomical structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001094 ! whole organism relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000497 name: pelvic adductor profundus namespace: zebrafish_anatomy def: "Dorsal pelvic fin muscle that originates at the anterior side of the basipterygium, lies mostly parallel to the pelvic fin rays and attaches and inserts on the bases of all the pelvic fin rays." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-171118-8] synonym: "adductor profundus pelvicus" EXACT [ZFIN:ZDB-PUB-171118-8] synonym: "pelvic adductors profundus" EXACT PLURAL [] xref: TAO:0000497 is_a: ZFA:0005268 ! adductor muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000258 ! pelvic fin musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000498 name: dilatator operculi namespace: zebrafish_anatomy def: "Mandibular muscle that inserts along the dorsolateral faces of the opercles. Responsible for opercular abduction." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-020703-2, ZFIN:ZDB-PUB-080306-33] synonym: " dilatator opercula" EXACT [] synonym: "dilator opercula" RELATED [] synonym: "dilators operculi" RELATED PLURAL [] xref: TAO:0000498 is_a: ZFA:0000236 ! mandibular muscle relationship: develops_from ZFA:0007050 ! constrictor dorsalis relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0000499 name: dorsal arrector namespace: zebrafish_anatomy def: "The muscle that acts as an antagonist to the arrector ventralis, reversing the direction of the leading edge of the pectoral fin to initiate the upstroke." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-050920-7] comment: Acts as antagonist to the ventral arrector ZDB-PUB-050920. synonym: "arrector dorsalis" EXACT [ZFIN:ZDB-PUB-050920-7] synonym: "dorsal arrectors" EXACT PLURAL [] xref: TAO:0000499 is_a: ZFA:0005275 ! arrector muscle relationship: develops_from ZFA:0005650 ! primitive pectoral fin adductor relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000500 name: dorsal erector namespace: zebrafish_anatomy def: "Dorsal fin muscle that moves individual rays the dorsal fin to an erect position. Antagonistic to dorsal depressor muscle. There is one dorsal erector for each dorsal fin lepidotrichium." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "dorsal erectors" EXACT PLURAL [] synonym: "erector dorsalis" EXACT [] xref: TAO:0000500 is_a: ZFA:0005267 ! erector muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000648 ! dorsal fin musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000501 name: dorsal funiculus namespace: zebrafish_anatomy synonym: "funiculus dorsalis" EXACT [] xref: TAO:0000501 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000075 ! spinal cord relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000502 name: dorsal motor nucleus trigeminal nerve namespace: zebrafish_anatomy def: "Trigeminal motor nucleus that is located dorsal to the lateral longitudinal fascicle." [ISBN:3764351209] xref: TAO:0000502 is_a: ZFA:0001365 ! trigeminal motor nucleus relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000503 name: dorsal oblique branchial muscle namespace: zebrafish_anatomy synonym: "dorsal oblique branchial muscles" EXACT PLURAL [] xref: TAO:0000503 is_a: ZFA:0000172 ! branchial muscle relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000504 name: dorsal retractor namespace: zebrafish_anatomy synonym: "dorsal retractors" EXACT PLURAL [] xref: TAO:0000504 is_a: ZFA:0000172 ! branchial muscle relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000505 name: dorsal telencephalon namespace: zebrafish_anatomy alt_id: ZFA:0007007 def: "Brain structure which is the dorsal part of the telencephalon, most of which is developmentally everted such that the ependymal lining of the unpaired median ventricle becomes located at the apparent periphery of the telencephalon. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-110119-16, ZFIN:ZDB-PUB-120111-2, ZFIN:ZDB-PUB-961014-1280] synonym: "area dorsalis telencephali" EXACT [] synonym: "dorsal telencephalic area" EXACT [] synonym: "pallium" EXACT [] xref: TAO:0000505 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000079 ! telencephalon relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000506 name: dorsal zone of dorsal telencephalon namespace: zebrafish_anatomy def: "Telencephalic nucleus which is the most dorsally located part of the dorsal telencephalon and surrounds the central zone of dorsal telencephalon. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "area dorsalis telencephali, zona dorsalis" EXACT [] synonym: "Dd" EXACT [ZFIN:ZDB-PUB-150226-6] synonym: "dorsal zone of D" EXACT [] synonym: "dorsal zone of dorsal telencephalic area" EXACT [] xref: TAO:0000506 is_a: ZFA:0001660 ! telencephalic nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000505 ! dorsal telencephalon relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000507 name: epineural namespace: zebrafish_anatomy def: "Some or all epineural bones ossify free from the neural arches in most teleosts. In some lower teleosts, e.g. Leptolepis, Hiodon, elopiforms and albuliforms, ossification proceeds from the attachment point of the ligament to the arch, and the epineural is a process of the neural arch. In many lower teleosts epineurals are forked proximally." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "epineurals" EXACT PLURAL [] xref: TAO:0000507 is_a: ZFA:0000526 ! intermuscular bone relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0000508 name: pelvic radial namespace: zebrafish_anatomy def: "Internal skeletal supports of the pelvic fin." [TAO:curator] synonym: "pelvic radials" EXACT PLURAL [] xref: TAO:0000508 is_a: ZFA:0000271 ! radial relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001387 ! pelvic fin skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000509 name: epithalamus namespace: zebrafish_anatomy def: "Brain structure which is part of the diencephalon and consists of the dorsal and ventral nuclei of the habenula, and two dorsal outgrowths, the epiphysis and the saccus dorsalis. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209] xref: TAO:0000509 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000101 ! diencephalon relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000510 name: external levatores namespace: zebrafish_anatomy synonym: "external levators" EXACT PLURAL [] xref: TAO:0000510 is_a: ZFA:0000172 ! branchial muscle relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000511 name: extraocular musculature namespace: zebrafish_anatomy def: "Muscle system surrounding the eye. The extraocular musculature is derived from the neural crest. The extraocular muscles assume their adult configuration between 66 and 72 hpf. They differentiate contemporaneously with the eye vesicle, form precise anatomic attachments to sclera and bone, and are innervated by cranial nerves 3, 4, and 6." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-110512-18, ZFIN:ZDB-PUB-970121-6] synonym: "ocular musculature" RELATED [] xref: TAO:0000511 is_a: ZFA:0000328 ! cephalic musculature relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000512 name: facial lobe namespace: zebrafish_anatomy def: "Hindbrain nucleus that doesn't project to the spinal cord." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-970218-12] synonym: "lobus facialis" EXACT [] synonym: "LVII" EXACT [ZFIN:ZDB-PUB-961014-1280] synonym: "tuberculum impar of Herrick " RELATED [] xref: TAO:0000512 is_a: ZFA:0001658 ! hindbrain nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000513 name: fast muscle cell somite 1 namespace: zebrafish_anatomy subset: cell_slim synonym: "fast muscle cells somite 1" EXACT PLURAL [] xref: TAO:0000513 is_a: ZFA:0009117 ! fast muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000924 ! myotome somite 1 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000514 name: frontal bone namespace: zebrafish_anatomy def: "Large elongated paired dermal bones that roof the cranium and bear part of the supraorbital canal. The frontal bones cover the upper edge of the lateral ethmoid, orbitosphenoid and pterosphenoids and overlaps the parietal bone posteriorly." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0000514 is_a: ZFA:0001590 ! dermal bone relationship: end ZFS:0000044 ! Adult relationship: overlaps ZFA:0005468 ! frontal-pterotic joint relationship: overlaps ZFA:0005472 ! inter-frontal joint relationship: overlaps ZFA:0005608 ! frontal-parietal joint relationship: part_of ZFA:0000863 ! dermatocranium relationship: part_of ZFA:0001410 ! orbital region relationship: part_of ZFA:0001580 ! neurocranium relationship: part_of ZFA:0005606 ! cranial vault relationship: start ZFS:0000041 ! Larval:Days 21-29 [Term] id: ZFA:0000516 name: periventricular grey zone namespace: zebrafish_anatomy alt_id: ZFA:0001352 def: "Tissue located on the ventral side of the optic tectum, that contains the cell bodies of most tectal neurons. It is adjacent to the tectal ventricle and opposite the eminentia granularis of the cerebellum. It also contains a neurogenic niche and has hypothalamic inputs. The dendrites of neurons from the periventricular grey zones project their apical dendrites to the stratum opticum and stratum fibrosum et griseum superficale and synapse with retinal axons that project to these layers." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-140919-7, ZFIN:ZDB-PUB-180207-5] synonym: "periventricular gray zone" EXACT [] synonym: "periventricular grey zones" EXACT PLURAL [] synonym: "periventricular layer" EXACT [ZFIN:ZDB-PUB-180207-5] synonym: "PGZ" EXACT [ZFIN:ZDB-PUB-140919-7] synonym: "strata periventriculare" EXACT [] synonym: "stratum griseum periventricular" EXACT [ZFIN:ZDB-PUB-180207-5] synonym: "stratum periventriculare" EXACT [] synonym: "SVP" RELATED [] xref: TAO:0000516 xref: TAO:0001352 is_a: ZFA:0001477 ! portion of tissue is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000445 ! optic tectum relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0000517 name: glossopharyngeal lobe namespace: zebrafish_anatomy synonym: "lobus glossopharyngei" EXACT [] xref: TAO:0000517 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000518 name: griseum centrale namespace: zebrafish_anatomy def: "Hindbrain nucleus which is longitudinally oriented and situated along the ventral fourth ventricle and extends rostrally up to the level of the tegmentum of the midbrain. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "central gray" EXACT [] synonym: "central grey" EXACT [] xref: TAO:0000518 is_a: ZFA:0001658 ! hindbrain nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000519 name: hemal arch namespace: zebrafish_anatomy def: "Hemal arches extend ventrally from the centra of caudal and transitional vertebrae to enclose the caudal artery and vein. In cyprinids, the hemal arch forms directly in membrane bone." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "haemal arch" EXACT [] synonym: "ventral arcocentrum" EXACT [] xref: TAO:0000519 is_a: ZFA:0001591 ! endochondral bone relationship: develops_from ZFA:0001361 ! basiventral relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000326 ! caudal vertebra relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000520 name: horizontal commissure namespace: zebrafish_anatomy xref: TAO:0000520 is_a: ZFA:0000338 ! diencephalic white matter relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000521 name: hyoid muscle namespace: zebrafish_anatomy def: "Muscles that insert into skeletal elements of pharyngeal arch 2 (hyoid arch). Dorsal hyoid muscles are innervated by small, posterior branches of the facial nerve VII. Ventral hyoid muscles are innervated by the hyoides ramus of VII." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-970819-13] synonym: "hyoid muscles" EXACT PLURAL [] xref: TAO:0000521 is_a: ZFA:0001652 ! head muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001307 ! pharyngeal musculature relationship: part_of ZFA:0001611 ! pharyngeal arch 2 relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000522 name: inferior hyohyoid namespace: zebrafish_anatomy def: "Hyoid muscle that originates at the anterior ceratohyals and inserts into the mesial aponeurosis, meeting its contralateral counterpart. The inferior hyohyoid is responsible for adduction of the hyoid arch." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-080306-33] synonym: "hyohyoideus inferior" RELATED [] synonym: "inferior hyohyoids" EXACT PLURAL [] xref: TAO:0000522 is_a: ZFA:0000521 ! hyoid muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0007052 ! hyohyoideus relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000523 name: inferior reticular formation namespace: zebrafish_anatomy xref: TAO:0000523 is_a: ZFA:0001658 ! hindbrain nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000542 ! medial column relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000524 name: infraorbital lateral line namespace: zebrafish_anatomy def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "infraorbital line" EXACT [] xref: TAO:0000524 is_a: ZFA:0001469 ! lateral line relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001470 ! anterior lateral line relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0000525 name: intercalarium namespace: zebrafish_anatomy def: "Third Weberian ossicle. The intercalarium is a Y- or T-shaped modification of neural arch 2 in which an anteriolateral process (the manubrium) is embedded in the interossicular ligament; other parts include the ascending and articulating processes." [ZFIN:ZDB-PUB-031103-13] xref: TAO:0000525 is_a: ZFA:0001066 ! neural arch relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000461 ! Weberian ossicle relationship: part_of ZFA:0001168 ! vertebra 2 relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0000526 name: intermuscular bone namespace: zebrafish_anatomy def: "Axial bone which is a segmental ossification that forms in the myoseptum; found in teleosts fishes only." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "intermuscular bones" EXACT PLURAL [] xref: TAO:0000526 is_a: ZFA:0001591 ! endochondral bone relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000317 ! postcranial axial skeleton relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0000527 name: pharyngobranchial bone namespace: zebrafish_anatomy def: "The pharyngobranchials are the dorsalmost bones of the branchial arches located immediately dorsal and medial to the epibranchials." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "infrapharyngobranchial" EXACT [] synonym: "pharyngobranchials" EXACT [] xref: TAO:0000527 is_a: ZFA:0001591 ! endochondral bone relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000095 ! pharyngeal arch 3-7 skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000528 name: interradialis caudalis namespace: zebrafish_anatomy def: "Muscle of the caudal fin that attaches to the appendicular skeleton and attaches to the first long ray on the dorsal side of the caudal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-060623-21] synonym: "IC" RELATED [] synonym: "interradiali" EXACT PLURAL [] synonym: "interradialis" EXACT [] xref: TAO:0000528 is_a: ZFA:0005145 ! muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000628 ! caudal fin musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000529 name: kidney namespace: zebrafish_anatomy def: "Cavitated compound organ located in the pleuroperitoneal cavity where hematopoiesis and filtering of blood occur." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "mesonephros" EXACT [] xref: TAO:0000529 is_a: ZFA:0001490 ! cavitated compound organ relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000163 ! renal system relationship: part_of ZFA:0001159 ! immune system relationship: part_of ZFA:0007116 ! pleuroperitoneal region relationship: start ZFS:0000037 ! Larval:Day 5 [Term] id: ZFA:0000530 name: lapillus namespace: zebrafish_anatomy alt_id: ZFA:0001102 def: "Otolith part of utricle." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-020403-4] synonym: "immature anterior otolith" RELATED [] synonym: "utricular otolith" EXACT [] synonym: "utriculith" EXACT [] xref: TAO:0000530 is_a: ZFA:0001617 ! otolith relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000700 ! utricle relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000531 name: lateral column namespace: zebrafish_anatomy synonym: "lateral columns" EXACT PLURAL [] xref: TAO:0000531 is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000421 ! reticular formation relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000532 name: lateral valvula cerebelli namespace: zebrafish_anatomy def: "Lateral division of the valvula cerebelli." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "lateral division" EXACT [] synonym: "valvula cerebelli, pars lateralis" EXACT [] xref: TAO:0000532 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000603 ! valvula cerebelli relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000533 name: lateral funiculus namespace: zebrafish_anatomy synonym: "lateral funiculi" EXACT PLURAL [] xref: TAO:0000533 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000075 ! spinal cord relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000534 name: lateral longitudinal fasciculus namespace: zebrafish_anatomy alt_id: ZFA:0000198 def: "The lateral longitudinal fascicule is an ascending bundle of axons. The LLF contains fibers of the auditory and mechanosensory systems which originate in the primary sensory brainstem nuclei and terminate in the torus semicircularis. The LLF lies dorsal to the superior reticular formation, adjacent to the ventral rhombencephalic commissure. The LLF becomes displaced more laterally as it approaches the torus semicircularis. The LLF is homologous to the mammalian lateral lemniscus." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-1280] synonym: "lateral lemniscus" EXACT [ZFIN:ZDB-PUB-040526-7] synonym: "lateral longitudinal fascicle" EXACT [] synonym: "lateral longitundinal fasciculus" EXACT [] synonym: "LLF" RELATED [] xref: TAO:0000534 is_a: ZFA:0000318 ! brainstem and spinal white matter relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000535 name: lateral reticular nucleus namespace: zebrafish_anatomy synonym: "lateral reticular nuclei" EXACT PLURAL [] xref: TAO:0000535 is_a: ZFA:0001658 ! hindbrain nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000531 ! lateral column relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000536 name: lateral zone of dorsal telencephalon namespace: zebrafish_anatomy def: "Telencephalic nucleus which is laterally located and surrounds the central zone of dorsal telencephalon. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "area dorsalis telencephali, zona lateralis" EXACT [] synonym: "Dl" EXACT [ZFIN:ZDB-PUB-150226-6] synonym: "lateral zone of D" EXACT [] synonym: "lateral zone of dorsal telencephalic area" EXACT [] xref: TAO:0000536 is_a: ZFA:0001660 ! telencephalic nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000505 ! dorsal telencephalon relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000537 name: levator operculi namespace: zebrafish_anatomy def: "Hyoid muscle that originates at the ventrolateral margin of the pterotic and inserts in the dorsomesial edge of the opercle. The levator operculi is responsible for jaw depression, its force of contraction is transmitted through the opercular series and the interoperculo-mandibular ligament to the lower jaw." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-080306-33] synonym: "levator operculae" EXACT [] xref: TAO:0000537 is_a: ZFA:0000521 ! hyoid muscle relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000035 ! Larval:Protruding-mouth [Term] id: ZFA:0000538 name: rib namespace: zebrafish_anatomy def: "Endochondral bone that is intersegmental and rod-shaped, forming in the peritoneal membrane and attached to the vertebral parapophyses. Ribs protect and support internal organs." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "dorsal rib" EXACT [] synonym: "pleural rib" EXACT [] xref: TAO:0000538 is_a: ZFA:0001591 ! endochondral bone relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001582 ! non-Weberian precaudal vertebra relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000539 name: locus coeruleus namespace: zebrafish_anatomy def: "The locus coeruleus is a widely projecting isthmal noradrenergic nucleus. It consists of between three and ten neurons, most of which have multiple, bilaterally projecting axons." [ZFIN:ZDB-PUB-961014-717] comment: Sometimes considered part of the reticular formation. synonym: "loci coeruleus" EXACT PLURAL [] xref: TAO:0000539 is_a: ZFA:0001658 ! hindbrain nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000540 name: magnocellular octaval nucleus namespace: zebrafish_anatomy synonym: "magnocellular octaval nuclei" EXACT PLURAL [] xref: TAO:0000540 is_a: ZFA:0000401 ! octaval nerve sensory nucleus relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000541 name: marginal blastomere namespace: zebrafish_anatomy def: "Cells (incompletely cleaved before the YSL forms), located at the surface just at the rim of the blastodisc, external to the deep blastomeres." [ZFIN:ZDB-PUB-961014-576] subset: cell_slim synonym: "marginal blastomeres" EXACT PLURAL [] xref: TAO:0000541 is_a: ZFA:0000093 ! blastomere relationship: end ZFS:0000015 ! Blastula:Dome relationship: start ZFS:0000005 ! Cleavage:16-cell [Term] id: ZFA:0000542 name: medial column namespace: zebrafish_anatomy synonym: "medial column of the reticular formation" EXACT [] synonym: "medial columns" EXACT PLURAL [] xref: TAO:0000542 is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000421 ! reticular formation relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000543 name: medial longitudinal fasciculus namespace: zebrafish_anatomy def: "The medial longitudinal fasciculus (MLF) is a pair of crossed fiber tracts (group of axons), that begin with in the nucleus of the MLF and run ventral to the rhombencephalic ventricle, towards the caudal end of the medulla oblongata. The dorsal portion of the MLF including the Mauthner axon continues into the spinal chord while the ventral portion of the MLF associates with other fiber systems in the funiculus ventralis prior to reaching the spinal chord. Throughout the most of its rhombencephalic extent the MLF is intersected by the ventral rhombencephalic commissure." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-1280] synonym: "MLF" RELATED [] xref: TAO:0000543 is_a: ZFA:0000318 ! brainstem and spinal white matter relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000544 name: medial pterygiophores anal fin namespace: zebrafish_anatomy is_obsolete: true replaced_by: ZFA:0001646 [Term] id: ZFA:0000545 name: medulla oblongata namespace: zebrafish_anatomy def: "Brain structure that is located ventrocaudal to the cerebellum and just anterior to the spinal cord and contains the sensory and motor nuclei of six cranial nerves. In zebrafish, with the exception of the cerebellum, the ventral remainder of the metencephalon can be separated only arbitrarily from the more caudal myelencephalic portion of the medulla oblongata." [ISBN:3764351209] xref: TAO:0000545 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000029 ! hindbrain relationship: part_of ZFA:0001707 ! brainstem relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000546 name: mesonephric duct namespace: zebrafish_anatomy def: "Duct of the adult kidney (mesonephros), present bilaterally ventral to the somites and leading to the cloacal chamber." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "renal duct" RELATED [] synonym: "Wolffian duct" RELATED [] xref: TAO:0000546 is_a: ZFA:0005171 ! duct relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000163 ! renal system relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000547 name: mouth namespace: zebrafish_anatomy xref: TAO:0000547 is_a: ZFA:0000292 ! surface structure relationship: develops_from ZFA:0001290 ! stomodeum relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000339 ! digestive system relationship: part_of ZFA:0000590 ! oral region relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000548 name: musculature system namespace: zebrafish_anatomy def: "Anatomical system consisting of the cardiac, skeletal and smooth muscles." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0000548 is_a: ZFA:0001439 ! anatomical system relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0000549 name: posttemporal namespace: zebrafish_anatomy def: "Paired fin bone that attaches the pectoral girdle to the skull via two projections contacting the epiotic and intercalar bones, and carry the main laterosensory canal." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "post-temporal " RELATED [] synonym: "postemporal" EXACT [] xref: TAO:0000549 is_a: ZFA:0001590 ! dermal bone relationship: end ZFS:0000044 ! Adult relationship: overlaps ZFA:0005889 ! epiotic-posttemporal joint relationship: part_of ZFA:0000189 ! otic region relationship: part_of ZFA:0000407 ! pectoral girdle relationship: part_of ZFA:0000863 ! dermatocranium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000550 name: naris namespace: zebrafish_anatomy def: "External openings to the nasal cavity." [GOC:mh, http://medical-dictionary.thefreedictionary.com/nares, ORCiD:0000-0001-9114-8737] synonym: "nares" EXACT PLURAL [] synonym: "nostril" EXACT [] xref: TAO:0000550 is_a: ZFA:0000292 ! surface structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000047 ! peripheral olfactory organ relationship: part_of ZFA:0001114 ! head relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0000551 name: nucleus lateralis valvulae namespace: zebrafish_anatomy def: "Hindbrain nucleus in the tegmental region of rhombomere 1. The cells of the nucleus are granular and lie at the ventral border of the cerebellum and brain stem." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-100601-20, ZFIN:ZDB-PUB-961014-1280] xref: TAO:0000551 is_a: ZFA:0001658 ! hindbrain nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000552 name: nucleus ruber namespace: zebrafish_anatomy def: "Nucleus located in the midbrain tegmentum that controls motor coordination during locomotion." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-151021-15] synonym: "red nucleus" EXACT [] xref: TAO:0000552 is_a: ZFA:0005577 ! tegmental nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000160 ! tegmentum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000553 name: oculomotor nucleus namespace: zebrafish_anatomy synonym: "motor nucleus III" EXACT [] synonym: "nIII" EXACT [] xref: TAO:0000553 is_a: ZFA:0005577 ! tegmental nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000160 ! tegmentum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000554 name: olfactory epithelium namespace: zebrafish_anatomy def: "Nasal epithelium wherein ciliated olfactory receptor neurons, supporting cells, and basal cells are located. The olfactory epithelium bowl-shaped structures surrounding the lumen of the olfactory pit." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-980729-35] synonym: "nasal epithelium" EXACT [] synonym: "nasal sensory epithelium" EXACT [] xref: TAO:0000554 is_a: ZFA:0001486 ! epithelium relationship: develops_from ZFA:0001431 ! primitive olfactory epithelium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000047 ! peripheral olfactory organ relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0000555 name: opercular flap namespace: zebrafish_anatomy def: "A large flap, covered by integument, supported by several flat bones, actuated by muscles, found on the side of the head covering the gill chambers." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-110609-47] synonym: "gill cover" EXACT [] synonym: "gill slit" RELATED [] synonym: "opercular apparatus" EXACT [] synonym: "opercular cover" RELATED [ZFIN:ZDB-PUB-030304-18] synonym: "operculum" EXACT [] xref: TAO:0000555 is_a: ZFA:0000292 ! surface structure relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000556 name: optic chiasm namespace: zebrafish_anatomy def: "Decussation of cranial nerve II axons whereby the retinal axons cross the midline, projecting contralaterally through the optic tract." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "chiasma opticum" EXACT [ZFIN:ZDB-PUB-961014-1280] synonym: "optic commissure" EXACT [] xref: TAO:0000556 is_a: ZFA:0000338 ! diencephalic white matter relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0000557 name: preural 1 vertebra namespace: zebrafish_anatomy def: "Vertebra anterior to the urostyle; sometimes termed the 'penultimate' vertebra." [ZFIN:ZDB-PUB-011008-1] synonym: "penultimate vertebra" EXACT [] synonym: "preural centrum 1" EXACT [] synonym: "pu1" EXACT [] synonym: "second last vertebra" EXACT [] xref: TAO:0000557 is_a: ZFA:0000734 ! preural vertebra relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000037 ! Larval:Day 5 [Term] id: ZFA:0000558 name: posterior macula namespace: zebrafish_anatomy def: "Macula that is located in the developing posterior inner ear, and gives rise to the macula neglecta and the macula saccule. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "pm" EXACT [] synonym: "posterior sensory patch" EXACT [] synonym: "posteromedial macula" EXACT [] xref: TAO:0000558 is_a: ZFA:0000386 ! macula relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0001671 ! macula communis relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000559 name: otolith organ namespace: zebrafish_anatomy def: "Cavitated compound organ that is a fluid filed chamber with a maculae on one surface and associated otolith tethered to the maculae." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "otolith organs" EXACT PLURAL [] xref: TAO:0000559 is_a: ZFA:0001490 ! cavitated compound organ relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000217 ! inner ear relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000560 name: oviduct namespace: zebrafish_anatomy def: "Duct that connects ovary with cloacal chamber. In zebrafish the oviduct is a continuation of the ovary." [GOC:cvs, GOC:mh, ISBN:0199638098, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-2244-7917] synonym: "oviducts" EXACT PLURAL [] xref: TAO:0000560 is_a: ZFA:0005171 ! duct relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000303 ! female organism relationship: part_of ZFA:0000632 ! reproductive system relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000561 name: parasphenoid namespace: zebrafish_anatomy def: "Long, unpaired median dermal bone that runs almost the entire length of the cranium. Contacts the prevomer anteriorly, and the prootic and basioccipital posteriorly. Anteriorly the parasphenoid is a long, thin bone that widens abruptly at the point of contact with the prootic." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0000561 is_a: ZFA:0001590 ! dermal bone relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000290 ! sphenoid region relationship: part_of ZFA:0000351 ! olfactory region relationship: part_of ZFA:0000863 ! dermatocranium relationship: part_of ZFA:0001410 ! orbital region relationship: part_of ZFA:0001580 ! neurocranium relationship: part_of ZFA:0005509 ! palate relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000563 name: pectoral fin musculature namespace: zebrafish_anatomy def: "Musculature that is part of the pectoral fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "pectoral fin muscle" RELATED [] xref: TAO:0000563 is_a: ZFA:0000207 ! fin musculature relationship: develops_from ZFA:0001000 ! mesenchyme pectoral fin relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001161 ! pectoral fin relationship: start ZFS:0000031 ! Pharyngula:Prim-25 [Term] id: ZFA:0000564 name: pelvic abductor profundus namespace: zebrafish_anatomy def: "Deep pelvic muscle that originates from the basipterygium and lies manly parallel to the rays and attaches to the base of all the rays except ray 1." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-171118-8] synonym: "abductor profundus pelvicus" EXACT [ZFIN:ZDB-PUB-171118-8] synonym: "pelvic abductors profundus" EXACT PLURAL [] xref: TAO:0000564 is_a: ZFA:0005269 ! abductor muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000258 ! pelvic fin musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000565 name: pelvic girdle namespace: zebrafish_anatomy def: "Anatomical cluster that consists of the paired basipterygia which support the pelvic fin." [TAO:WD] synonym: "pelvic girdles" EXACT PLURAL [] xref: TAO:0000565 is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001387 ! pelvic fin skeleton relationship: start ZFS:0000041 ! Larval:Days 21-29 [Term] id: ZFA:0000566 name: posterior crista namespace: zebrafish_anatomy alt_id: ZFA:0000478 def: "Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own characteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "caudal crista" EXACT [] synonym: "pc" EXACT [] synonym: "posterior crista ampullaris" EXACT [] synonym: "posterior cristae" EXACT PLURAL [] synonym: "posterior semicircular canal sensory patch" EXACT [] synonym: "posterior semicircular canal sensory patches" EXACT PLURAL [] xref: TAO:0000566 is_a: ZFA:0007068 ! otic epithelium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000262 ! posterior semicircular canal relationship: start ZFS:0000035 ! Larval:Protruding-mouth [Term] id: ZFA:0000567 name: premaxilla namespace: zebrafish_anatomy def: "The premaxilla is a bone of the upper jaw. It is an L-shaped bone first visible as a thin sliver in the anterodorsal region of the upper lip, anterior to the dorsal tip of the maxilla (5.7 mm). In the adult, the premaxilla is ligamentously attached to its counterpart at the midline and the kinethmoid posterodorsally, by the premaxillo-rostroid ligaments. Premaxillary teeth are absent in zebrafish." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "premaxillae" EXACT PLURAL [] xref: TAO:0000567 is_a: ZFA:0001590 ! dermal bone relationship: end ZFS:0000044 ! Adult relationship: overlaps ZFA:0005475 ! inter-premaxillary joint relationship: part_of ZFA:0000863 ! dermatocranium relationship: part_of ZFA:0001272 ! palatoquadrate arch relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000568 name: presumptive blood namespace: zebrafish_anatomy def: "Presumptive structure fated to become blood. Determined by marker expression." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] xref: TAO:0000568 is_a: ZFA:0001116 ! presumptive structure relationship: end ZFS:0000027 ! Segmentation:20-25 somites relationship: start ZFS:0000014 ! Blastula:Sphere [Term] id: ZFA:0000569 name: presumptive hindbrain namespace: zebrafish_anatomy def: "Embryonic structure that gives rise to the hindbrain." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "presumptive rhombencephalon" EXACT [] xref: TAO:0000569 is_a: ZFA:0001105 ! embryonic structure relationship: end ZFS:0000020 ! Gastrula:75%-epiboly relationship: part_of ZFA:0000146 ! presumptive brain relationship: part_of ZFA:0007015 ! posterior presumptive neural plate relationship: start ZFS:0000019 ! Gastrula:Shield [Term] id: ZFA:0000570 name: optic primordium namespace: zebrafish_anatomy alt_id: ZFA:0000021 def: "Portion of tissue that is part of the anterior neural keel and will form the optic vesicle." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "eye field" EXACT [] xref: TAO:0000570 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000023 ! Segmentation:1-4 somites relationship: part_of ZFA:0007024 ! anterior neural keel relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0000571 name: presumptive telencephalon namespace: zebrafish_anatomy def: "Embryonic structure that gives rise to the telencephalon." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0000571 is_a: ZFA:0001105 ! embryonic structure relationship: end ZFS:0000025 ! Segmentation:10-13 somites relationship: part_of ZFA:0000131 ! neural keel relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0000573 name: internal cellular layer namespace: zebrafish_anatomy def: "Portion of tissue which is the innermost layer of the olfactory bulb. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "stratum cellulare internum bulbi olfactorii" EXACT [] xref: TAO:0000573 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000402 ! olfactory bulb relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000574 name: presumptive diencephalon namespace: zebrafish_anatomy def: "Embryonic structure that gives rise to the diencephalon." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0000574 is_a: ZFA:0001105 ! embryonic structure relationship: end ZFS:0000025 ! Segmentation:10-13 somites relationship: part_of ZFA:0000131 ! neural keel relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0000575 name: prootic namespace: zebrafish_anatomy def: "Paired cartilage bone that contacts the pterosphenoid anteriorly, the sphenotic and the pterotic dorsally, and the epiotic and basioccipital posteriorly. The parasphenoid covers the ventral region of each prootic, the upper edge of which contributes to the hyomandibular facet. The prootic bear foramina that accommodate branches of the trigeminal and facial nerves." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "prootics" EXACT PLURAL [] xref: TAO:0000575 is_a: ZFA:0001591 ! endochondral bone relationship: develops_from ZFA:0001423 ! parachordal cartilage relationship: develops_from ZFA:0001425 ! basal plate cartilage relationship: develops_from ZFA:0001500 ! auditory capsule relationship: end ZFS:0000044 ! Adult relationship: has_developmental_contribution_from ZFA:0005887 ! posterior basicapsular commissure relationship: overlaps ZFA:0005482 ! prootic-pterosphenoid joint relationship: overlaps ZFA:0005613 ! basioccipital-prootic joint relationship: part_of ZFA:0000189 ! otic region relationship: part_of ZFA:0001424 ! chondrocranium relationship: part_of ZFA:0001580 ! neurocranium relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0000576 name: pterotic namespace: zebrafish_anatomy def: "Paired cartilage bone that contacts the autosphenotic anteriorly, the parietal dorsally, the prootic ventrally, and the epiotic and exoccipital posteriorly. The pterotic encloses the horizontal semicircular canal of the inner ear. The lower edge of the pterotic contributes to the hyomandibular facet." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "autopterotic" EXACT [] xref: TAO:0000576 is_a: ZFA:0001591 ! endochondral bone relationship: develops_from ZFA:0001500 ! auditory capsule relationship: end ZFS:0000044 ! Adult relationship: overlaps ZFA:0005468 ! frontal-pterotic joint relationship: part_of ZFA:0000189 ! otic region relationship: part_of ZFA:0000863 ! dermatocranium relationship: part_of ZFA:0001424 ! chondrocranium relationship: part_of ZFA:0001580 ! neurocranium relationship: start ZFS:0000040 ! Larval:Days 14-20 [Term] id: ZFA:0000577 name: renal portal vein namespace: zebrafish_anatomy def: "Afferent vein that supplies the kidney." [GOC:cvs, ISBN:9781118222942, ORCiD:0000-0002-2244-7917] synonym: "renal portal veins" EXACT PLURAL [] xref: TAO:0000577 is_a: ZFA:0000082 ! vein relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005024 ! trunk vasculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000578 name: ceratohyal bone namespace: zebrafish_anatomy def: "Endochondral bone that is bilaterally paired and articulates with the hypohyal cartilage or bone, dorsal and ventral hypohyals, and epihyal posteriorly. The ceratohyal bone begins as a ossification in the anterior portion of the ceratohyal cartilage (4.6 mm NL). The posterior end broadens and meets the epihyal in a pad of cartilage. The anterior end broadens and terminates in two heads (8.8 mm). The anterodorsal head forms a synchondrosis with the dorsal hypohyal and the anteroventral head forms a synchondrosis with the ventral hypohyal. All of the branchiostegal rays articulate with the ventral edge of the ceratohyal." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "anterior ceratohyal" EXACT [] synonym: "ceratohyal anterior" EXACT [] synonym: "rostral ceratohyal" EXACT [] xref: TAO:0000578 is_a: ZFA:0001591 ! endochondral bone relationship: develops_from ZFA:0001400 ! ceratohyal cartilage relationship: end ZFS:0000044 ! Adult relationship: overlaps ZFA:0005465 ! ceratohyal-branchiostegal ray joint relationship: overlaps ZFA:0005466 ! ceratohyal-ventral hypohyal joint relationship: overlaps ZFA:0005467 ! ceratohyal-dorsal hypohyal joint relationship: overlaps ZFA:0005497 ! epihyal-ceratohyal joint relationship: overlaps ZFA:0005859 ! ceratohyal-interhyal joint relationship: part_of ZFA:0001402 ! ventral hyoid arch relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000579 name: rostral mesencephalo-cerebellar tract namespace: zebrafish_anatomy def: "Brainstem tract which carries cerebellar afferents from the pretectum and runs medial to the lateral longitudinal fascicle for a distance before turning dorsally to traverse the nucleus lateralis valvulae. Fuses with the caudal mesencephalo-cerebellar tract upon entering the cerebellum. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "anterior mesencephalo-cerebellar tract" EXACT [] xref: TAO:0000579 is_a: ZFA:0001682 ! white matter relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000643 ! rostral cerebellar tract relationship: part_of ZFA:0001707 ! brainstem relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000580 name: rostral preglomerular nucleus namespace: zebrafish_anatomy def: "Preglomerular nucleus which is the most rostrolaterally located of the preglomerular nuclei of the caudal tuberculum. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "anterior preglomerular nucleus" EXACT [] synonym: "nucleus praeglomerulosus anterior" EXACT [] xref: TAO:0000580 is_a: ZFA:0001662 ! preglomerular nucleus relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000581 name: rostral tuberal nucleus namespace: zebrafish_anatomy def: "Diencephalic nucleus which is the most anterior and lateral part of the ventral hypothalamic zone. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "anterior tuberal nucleus" EXACT [] synonym: "nucleus tuberis anterior" EXACT [] xref: TAO:0000581 is_a: ZFA:0001659 ! diencephalic nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000707 ! ventral hypothalamic zone relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000582 name: saccus dorsalis namespace: zebrafish_anatomy xref: TAO:0000582 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000509 ! epithalamus relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000583 name: scapula namespace: zebrafish_anatomy def: "Endochondral bone that is located medial to the cleithrum, and articulates ventrally with the coracoid, medially with the mesocoracoid when the later is present and posteriorly with the upper one to three proximal radials. The scapula develops from the scapulocoracoid cartilage and belongs to the primary pectoral girdle. It may be perforated by the scapular foramen or it may be notched ventrally and forms together with a similar notch of the coracoid the scapulocoracoid foramen." [TAO:GA_TG] synonym: "scapulae" EXACT PLURAL [] xref: TAO:0000583 is_a: ZFA:0001591 ! endochondral bone relationship: develops_from ZFA:0001455 ! scapulocoracoid relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000407 ! pectoral girdle relationship: start ZFS:0000041 ! Larval:Days 21-29 [Term] id: ZFA:0000585 name: kinethmoid cartilage namespace: zebrafish_anatomy def: "Cranial cartilage which is a small median cartilage located between the premaxillae and anterodorsal to the ethmoid." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0000585 is_a: ZFA:0001461 ! chondrocranium cartilage relationship: end ZFS:0000040 ! Larval:Days 14-20 relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000586 name: preural 2 vertebra namespace: zebrafish_anatomy def: "Vertebra anterior to preural centrum 1; sometimes termed the 'antepenultimate' vertebra." [ZFIN:ZDB-PUB-011008-1] synonym: "antepenultimate vertebra" EXACT [] synonym: "preural centrum 2" EXACT [] synonym: "pu2" EXACT [] synonym: "third last vertebra" EXACT [] xref: TAO:0000586 is_a: ZFA:0000734 ! preural vertebra relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000040 ! Larval:Days 14-20 [Term] id: ZFA:0000587 name: sphenotic namespace: zebrafish_anatomy def: "Paired cartilage bone that contacts the pterosphenoid anteriorly, the prootic ventrally, and the pterotic posteriorly. Roofed by the frontal bone anteriorly and the parietal bone posteriorly, the sphenotic bears a large anteriolateral process that borders the posterodorsal margin of the orbit. The lower edge of the sphenotic contributes to the hyomandibular facet." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "autosphenotic" EXACT [] xref: TAO:0000587 is_a: ZFA:0001591 ! endochondral bone relationship: develops_from ZFA:0001506 ! tectum synoticum relationship: develops_from ZFA:0001515 ! taenia marginalis posterior relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000189 ! otic region relationship: part_of ZFA:0001424 ! chondrocranium relationship: part_of ZFA:0001580 ! neurocranium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000588 name: statoacoustic (VIII) ganglion namespace: zebrafish_anatomy def: "The sensory ganglion of the ear. (See Anatomical Atlas entry for statoacoustic ganglion by T. Whitfield.)" [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "auditory ganglion" EXACT [] synonym: "gVIII" EXACT [] synonym: "sag" EXACT [] synonym: "statoacoustic ganglia" EXACT PLURAL [] xref: TAO:0000588 is_a: ZFA:0000013 ! cranial ganglion relationship: develops_from ZFA:0000138 ! otic placode relationship: develops_from ZFA:0000762 ! facio-acoustic neural crest relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001138 ! vestibuloauditory system relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000589 name: sulcus ypsiloniformis namespace: zebrafish_anatomy def: "Anatomical groove which separates the dorsal and medial zones of dorsal telencephalon. From Neuroanatomy of the Zebrafish Brain." [GOC:cvs, GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-2244-7917] xref: TAO:0000589 is_a: ZFA:0001690 ! groove relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000505 ! dorsal telencephalon relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000590 name: oral region namespace: zebrafish_anatomy def: "Region of the head where the mouth and oral structures are located." [GOC:ymb, ORCid:0000-0002-9900-7880] xref: TAO:0000590 is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001114 ! head relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000591 name: presumptive paraxial mesoderm namespace: zebrafish_anatomy def: "Portion of presumptive mesoderm fated to become paraxial mesoderm. Determined by fate mapping." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0000591 is_a: ZFA:0001377 ! presumptive mesoderm relationship: end ZFS:0000021 ! Gastrula:90%-epiboly relationship: start ZFS:0000014 ! Blastula:Sphere [Term] id: ZFA:0000592 name: superficial pelvic adductor namespace: zebrafish_anatomy def: "Superficial, dorsal pelvic fin muscle that originates at the anterior side of the basipterygium and inserts onto all pelvic fin rays except ray 1." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-171118-8] synonym: "adductor superficialis pelvicus" EXACT [ZFIN:ZDB-PUB-171118-8] synonym: "superficial pelvic adductors" EXACT PLURAL [] xref: TAO:0000592 is_a: ZFA:0005268 ! adductor muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000258 ! pelvic fin musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000593 name: superior reticular formation medial column namespace: zebrafish_anatomy comment: There may be a cholinergic nucleus called the superior reticular nucleus rostral to the locus coeruleus, ZDB-PUB-040526-6. xref: TAO:0000593 is_a: ZFA:0005575 ! brain nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000542 ! medial column relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000594 name: supracleithrum namespace: zebrafish_anatomy def: "Dermal bone that articulates dorsally with the posttemporal and ventrally with the cleithrum. Supracleithrum is part of the secondary pectoral girdle and commonly, carries part of the lateral line canal." [TAO:GA_TG, TAO:WD] synonym: "supracleithra" EXACT PLURAL [] xref: TAO:0000594 is_a: ZFA:0001590 ! dermal bone relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000407 ! pectoral girdle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000595 name: supraoccipital namespace: zebrafish_anatomy def: "Large shield-shaped unpaired median cartilage bone that contact the parietal anteriorly, and the exoccipital and epiotic laterally. Forms the posterodorsal most point of the cranium. The supraoccipital usually bears a crest that extends posterodorsally." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0000595 is_a: ZFA:0001591 ! endochondral bone relationship: develops_from ZFA:0001506 ! tectum synoticum relationship: end ZFS:0000044 ! Adult relationship: overlaps ZFA:0005609 ! supraoccipital-parietal joint relationship: part_of ZFA:0001414 ! occipital region relationship: part_of ZFA:0001424 ! chondrocranium relationship: part_of ZFA:0001580 ! neurocranium relationship: part_of ZFA:0005606 ! cranial vault relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000596 name: supraorbital series namespace: zebrafish_anatomy is_obsolete: true consider: ZFA:0001410 [Term] id: ZFA:0000597 name: telencephalic white matter namespace: zebrafish_anatomy def: "CNS white matter that is part of the telencephalon." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "telencephalic tract/commissure" EXACT [] xref: TAO:0000597 is_a: ZFA:0001682 ! white matter relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000079 ! telencephalon relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000598 name: testis namespace: zebrafish_anatomy def: "Male reproductive organ. Adult zebrafish testes are paired organs forming elongated structures, internally organized into tubules. These tubules are formed by seminiferous epithelium containing cysts of spermatogonia and spermatocytes surrounded by somatic support cells, called Sertoli cells. Cysts are arranged around a lumen containing spermatozoa that is connected to the efferent ducts. The interstitial regions between the tubules contain the steroid-producing Leydig cells, connective tissue, and blood vessels." [GOC:cvs, GOC:mh, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-161215-2] synonym: "testes" EXACT PLURAL [] xref: TAO:0000598 is_a: ZFA:0000413 ! gonad relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000242 ! male organism relationship: part_of ZFA:0001158 ! endocrine system relationship: start ZFS:0000041 ! Larval:Days 21-29 [Term] id: ZFA:0000599 name: torus semicircularis namespace: zebrafish_anatomy def: "Multi-tissue structure that is part of the midbrain and develops from the alar plate. The torus semicircularis is located dorsal to the lateral tegmentum where it extends into the medial tectal ventricle and receives ascending sensory octavolateralis input." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "semicircular torus " EXACT [] xref: TAO:0000599 is_a: ZFA:0001488 ! multi-tissue structure relationship: develops_from ZFA:0001357 ! alar plate midbrain region relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000128 ! midbrain relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000600 name: cranial nerve IV namespace: zebrafish_anatomy def: "Cranial nerve that innervates the oculomotor system. The trochlear nerve is the only motor nerve to project dorsally and then cross the midline before exiting the neuroepithelium and re-orienting ventrally to project to the contralateral superior oblique extraocular muscle." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-131119-12] synonym: "CN-IV" EXACT [] synonym: "trochlear" EXACT [] synonym: "trochlear nerve" EXACT [] xref: TAO:0000600 is_a: ZFA:0000641 ! cranial nerve relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000160 ! tegmentum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000601 name: pretectal periventricular nucleus namespace: zebrafish_anatomy def: "Diencephalic nucleus that is part of the synencephalon and the pretectum and is located periventricularly. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "periventricular pretectum" EXACT [] synonym: "pretectal periventricular nuclei" EXACT PLURAL [] xref: TAO:0000601 is_a: ZFA:0001659 ! diencephalic nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000293 ! synencephalon relationship: part_of ZFA:0000418 ! pretectum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000602 name: uroneural namespace: zebrafish_anatomy def: "Neural arch that extends along the dorso-lateral surface of the last preural centra and/or ural centra and the notochord (Arratia & Schultze, 1992). An uroneural develops as a modification of the neural arch of an ural centrum (Patterson, 1968). The series of uroneurals may include from 7 to 1 elements that are numbered from rostral to caudal. An uroneural is a paired membrane bone." [http://citebank.org/node/36904, ISSN:0362-2525, TAO:WD] synonym: "uroneurals" EXACT PLURAL [] xref: TAO:0000602 is_a: ZFA:0001066 ! neural arch relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000862 ! caudal fin skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000603 name: valvula cerebelli namespace: zebrafish_anatomy def: "Brain structure which is caudally attached to the rostral medulla oblongata and extends into the tectal ventricle. The valvula cerebelli consists of a granular and a molecular layer along with aggregations of large Purkinje and eurydendroid cells and is uniquely present in ray-finned fishes. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "valvula" RELATED [] synonym: "valvula cerebellum" EXACT PLURAL [] xref: TAO:0000603 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000100 ! cerebellum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000604 name: ventral aorta namespace: zebrafish_anatomy def: "Outflow artery from the heart to the aortic arches." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000604 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000605 name: ventral funiculus namespace: zebrafish_anatomy synonym: "ventral funiculi" EXACT PLURAL [] xref: TAO:0000605 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000075 ! spinal cord relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000606 name: ventral oblique branchial muscle namespace: zebrafish_anatomy synonym: "ventral oblique branchial muscles" EXACT PLURAL [] xref: TAO:0000606 is_a: ZFA:0000172 ! branchial muscle relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000607 name: ventral rhombencephalic commissure namespace: zebrafish_anatomy def: "Brainstem commissure that intersects the medial longitudinal fasciculus." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] xref: TAO:0000607 is_a: ZFA:0000318 ! brainstem and spinal white matter relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000608 name: ventral transverse namespace: zebrafish_anatomy synonym: "transversus ventralis " EXACT [] xref: TAO:0000608 is_a: ZFA:0000172 ! branchial muscle relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000609 name: ventrolateral nucleus namespace: zebrafish_anatomy def: "Midbrain nucleus which is part of the torus semicircularis and is the target of ascending octavolateralis systems related to mechanoreception. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] xref: TAO:0000609 is_a: ZFA:0001665 ! midbrain nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000599 ! torus semicircularis relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000610 name: vertical myoseptum namespace: zebrafish_anatomy def: "Connective tissue partitions developing between the myotomes." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-576] synonym: "transverse myoseptum" EXACT [] xref: TAO:0000610 is_a: ZFA:0001089 ! myoseptum relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0000611 name: visceromotor column namespace: zebrafish_anatomy def: "Collection of the visceromotor nuclei and their fiber tracts in the medulla oblongata." [ISBN:3540560130] xref: TAO:0000611 is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000612 name: protractor hyoidei namespace: zebrafish_anatomy def: "Muscle located on ventral side of the head, linking the ventral hyoid arch to the dentary. Innervated by ramus mandibularis V and ramus hyoides VII. Formed by the intermandibularis posterior and ventral interhyoideus." [TAO:WD, ZFIN:ZDB-PUB-080306-33] comment: Source: Winterbottom, R. 1973. A Descriptive Synonymy of the Striated Muscles of the Teleostei. Proceedings of the Academy of Natural Sciences of Philadelphia, Vol. 125 (1973), pp. 225-317.\n\nIn the zebrafish, as in most other teleosts, the interhyoideus becomes associated with the intermandibularis posterior, forming the protractor hyoideus. ZDB-PUB-080306-33. synonym: "protractor hyoideus" EXACT PLURAL [] synonym: "protractors hyoidei" EXACT PLURAL [] xref: TAO:0000612 is_a: ZFA:0000521 ! hyoid muscle relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000614 name: abductor profundus namespace: zebrafish_anatomy def: "Abductor muscle that develops from the primitive pectoral fin abductor. It originates along the anterior skeletal flange of the pectoral girdle. The abductor profundus bundles insert onto the fin ray base proximal processes of all fin rays." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-050920-7] synonym: "abductors profundus" EXACT PLURAL [] xref: TAO:0000614 is_a: ZFA:0005269 ! abductor muscle relationship: develops_from ZFA:0005651 ! primitive pectoral fin abductor relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000563 ! pectoral fin musculature relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0000615 name: adductor arcus palatini namespace: zebrafish_anatomy def: "Hyoid muscle that originates at the parasphenoid and inserts into the mesial sides of the hyomandibula, metapterygoid and entopterygoid. The Adductor arcus palatini is responsible for suspensorial adduction." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-080306-33] synonym: "adductors arcus palatini" EXACT PLURAL [] xref: TAO:0000615 is_a: ZFA:0000521 ! hyoid muscle relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000616 name: adductor profundus namespace: zebrafish_anatomy def: "Small thin adductor muscle that is part of the pectoral fin. The origin of the adductor profundus lies along the developing anterior skeletal flange of the pectoral girdle. The adductor profundus develops from the primitive pectoral fin adductor." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-050920-7] synonym: "adductors profundus" EXACT PLURAL [] xref: TAO:0000616 is_a: ZFA:0005268 ! adductor muscle relationship: develops_from ZFA:0005650 ! primitive pectoral fin adductor relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000563 ! pectoral fin musculature relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0000617 name: anal erector namespace: zebrafish_anatomy def: "Series of muscles that have a distal attachment at the anteriolateral base of each ray and spike and a proximal attachment to the haemal spines. A tendon runs along one third the dorsoventral length of the muscle toward the attachment at the haemal spine. These muscles act in opposition to the anal depressors to raise the anal fin rays." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-171118-8] synonym: "anal erectors" EXACT PLURAL [] synonym: "erectores anales" EXACT [ZFIN:ZDB-PUB-171118-8] xref: TAO:0000617 is_a: ZFA:0005267 ! erector muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001154 ! anal fin musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000618 name: ansulate commissure namespace: zebrafish_anatomy def: "Brainstem commissure located immediately rostral to the interpeduncular nucleus. Many fibers in the tecto-bulbar tract cross the midline through the ansulate commissure. Referred to as the ventral tegmental commissure at embryonic stages, and is the only commissure to change names during development. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "Cans" EXACT [] synonym: "commissura ansulata" EXACT [] synonym: "ventral tegmental commissure" EXACT [] xref: TAO:0000618 is_a: ZFA:0000318 ! brainstem and spinal white matter relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000619 name: anterior crista namespace: zebrafish_anatomy alt_id: ZFA:0000273 def: "Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own characteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "ac" EXACT [] synonym: "anterior crista ampullaris" EXACT [] synonym: "anterior cristae" EXACT PLURAL [] synonym: "anterior semicircular canal sensory patch" EXACT [] synonym: "anterior semicircular canal sensory patches" EXACT PLURAL [] synonym: "rostral crista" EXACT [] xref: TAO:0000619 is_a: ZFA:0007068 ! otic epithelium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000314 ! anterior semicircular canal relationship: start ZFS:0000035 ! Larval:Protruding-mouth [Term] id: ZFA:0000620 name: autopalatine namespace: zebrafish_anatomy def: "The cartilaginous autopalatine forms from the anterior palatoquadrate arch. The first sign of ossification is visible at the anterior tip where it articulates with the maxilla (7.6 mm). In adults there are three processes at the anterior portion of the palatine: a ventromedial process, which forms the socket of the small ball- and- socket joint with the preethmoid; a dorsomedial process, which is connected by a short ligament to the ethmoid; and a lateral process, which extends toward the first infraorbital. Possession of a dorsomedial process, which abuts the ethmoid, is a unique feature shared by Cypriniformes (Fink and Fink, 1981). The palatine has two components, the autopalatine (derived from pars autopalatine) and the dermal component having teeth, the dermopalatine Arratia & Schultze 1990. The element in cypriniforms is only the cartilage part, so that it is more correct to name it autopalatine and not as palatine in general that it implies a fusion of elements (as in perciforms)." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "palatine" EXACT [] xref: TAO:0000620 is_a: ZFA:0001591 ! endochondral bone relationship: develops_from ZFA:0001399 ! palatoquadrate cartilage relationship: end ZFS:0000044 ! Adult relationship: overlaps ZFA:0005420 ! autopalatine-lateral ethmoid joint relationship: overlaps ZFA:0005421 ! autopalatine-maxillary joint relationship: overlaps ZFA:0005422 ! autopalatine-vomer joint relationship: part_of ZFA:0001272 ! palatoquadrate arch relationship: start ZFS:0000041 ! Larval:Days 21-29 [Term] id: ZFA:0000621 name: quadrate namespace: zebrafish_anatomy def: "The quadrate is the dorsal bone in the jaw joint with the anguloarticular of the lower jaw. Ossification of the quadrate, a cartilage bone, begins as a posteriorly projecting membranous spine between the symplectic cartilage and the preopercle (5.1 mm NL). The body of the quadrate ossifies first at the ball-and-socket articulation with the anguloarticular (6.5 mm). The adult quadrate is shaped roughly like an inverted triangle with a long, posteriorly projecting spine off its posteroventral edge. The presence of a posteroventral or posterior process of the quadrate is a synapomorphy of Teleostei." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "quadrates" EXACT PLURAL [] xref: TAO:0000621 is_a: ZFA:0001591 ! endochondral bone relationship: develops_from ZFA:0001399 ! palatoquadrate cartilage relationship: end ZFS:0000044 ! Adult relationship: overlaps ZFA:0005486 ! quadrate-metapterygoid joint relationship: overlaps ZFA:0005616 ! quadrate-entopterygoid joint relationship: part_of ZFA:0001272 ! palatoquadrate arch relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0000622 name: barbel namespace: zebrafish_anatomy def: "Surface structure which is a tactile structure found in the branchial region. Barbels are covered with epidermis rich in taste buds, and are innervated by branches of the cranial nerves." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "barble" EXACT [] xref: TAO:0000622 is_a: ZFA:0000292 ! surface structure relationship: develops_from ZFA:0005119 ! barbel primordium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000368 ! integument relationship: part_of ZFA:0001114 ! head relationship: start ZFS:0000043 ! Juvenile:Days 45-89 [Term] id: ZFA:0000623 name: basipterygium namespace: zebrafish_anatomy def: "Endochondral bone that is paired and supports the pelvic fin. The basipterygium has a posteromedial process called the ischiac process (Wietzman 1962)." [TAO:curator] synonym: "pelvic bone" EXACT [] synonym: "pelvic girdle" RELATED [] xref: TAO:0000623 is_a: ZFA:0001591 ! endochondral bone relationship: develops_from ZFA:0001539 ! basipterygium cartilage relationship: end ZFS:0000044 ! Adult relationship: overlaps ZFA:0005471 ! inter-basipterygium joint relationship: part_of ZFA:0000565 ! pelvic girdle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000624 name: brachium conjunctivum namespace: zebrafish_anatomy comment: Term is being obsoleted because it cannot be anatomically identified in zebrafish. From Neuroanatomy of the Zebrafish Brain ISBN:3764351209. xref: TAO:0000624 is_obsolete: true [Term] id: ZFA:0000626 name: bulbo-spinal tract namespace: zebrafish_anatomy def: "Brainstem and spinal tract which emerges medial to the caudal intermediate reticular formation and runs caudally along the medial edge of the inferior reticular formation. It is displaced laterally and associates with other tracts in the dorsal part of the funiculus lateralis immediately prior to reaching the spinal cord. The bulbo-spinal tract carries descending spinal projections. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "tractus bulbospinalis" EXACT [] xref: TAO:0000626 is_a: ZFA:0000318 ! brainstem and spinal white matter relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000627 name: epihyal namespace: zebrafish_anatomy def: "Endochondral bone that begins ossifying on the anterior surface of the posterior end of the ceratohyal cartilage near the site of articulation with the interhyal (5.8 mm). It joins the ceratohyal in a pad of persisting cartilage." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "caudal ceratohyal" EXACT [] synonym: "posterior ceratohyal" EXACT [] xref: TAO:0000627 is_a: ZFA:0001591 ! endochondral bone relationship: develops_from ZFA:0001400 ! ceratohyal cartilage relationship: end ZFS:0000044 ! Adult relationship: overlaps ZFA:0005497 ! epihyal-ceratohyal joint relationship: overlaps ZFA:0005498 ! epihyal-branchiostegal ray joint relationship: part_of ZFA:0001402 ! ventral hyoid arch relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000628 name: caudal fin musculature namespace: zebrafish_anatomy def: "Fin musculature that is part of the caudal fin. The musculature is composed of 12 muscles that are arranged in a superficial and a deep muscle layer. Nerve roots of spinal segments 27-31 supply the caudal fin muscles." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-011008-1] xref: TAO:0000628 is_a: ZFA:0000207 ! fin musculature relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001058 ! caudal fin relationship: start ZFS:0000037 ! Larval:Day 5 [Term] id: ZFA:0000629 name: caudal motor nucleus namespace: zebrafish_anatomy def: "Abducens motor nucleus which is located at the level of the intermediate reticular formation." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "nucleus nervi abducentis, pars caudalis" EXACT [] synonym: "nVIc" EXACT [] xref: TAO:0000629 is_a: ZFA:0000713 ! abducens motor nucleus relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000630 name: caudal parvocellular preoptic nucleus namespace: zebrafish_anatomy def: "Diencephalic nucleus that is part of the preoptic area and is the posterior continuation of the rostral parvocellular preoptic nucleus. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209] synonym: "caudal parvocellular preoptic nuclei" EXACT PLURAL [] synonym: "posterior parvocellular preoptic nucleus" EXACT [] xref: TAO:0000630 is_a: ZFA:0001680 ! parvocellular preoptic nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000470 ! preoptic area relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000631 name: caudal pretectal nucleus namespace: zebrafish_anatomy def: "Diencephalic nucleus that is part of the superficial pretectum and is rostrally contiguous with the magnocellular superficial pretectal nucleus. Cells of the caudal pretectal nucleus are slightly smaller and less orderly around a central neuropil than those of the magnocellular superficial pretectal nucleus. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "caudal pretectal nuclei" EXACT PLURAL [] synonym: "posterior pretectal nucleus" EXACT [] xref: TAO:0000631 is_a: ZFA:0001659 ! diencephalic nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000687 ! superficial pretectum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000632 name: reproductive system namespace: zebrafish_anatomy def: "Anatomical system that has as its parts the organs concerned with reproduction." [UBERON:curator] xref: TAO:0000632 is_a: ZFA:0001439 ! anatomical system relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000014 ! Blastula:Sphere [Term] id: ZFA:0000633 name: caudal tuberculum namespace: zebrafish_anatomy def: "Brain structure which is part of the diencephalon and is larger than the dorsal thalamus and ventral thalamus. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "posterior tubercle" EXACT [] synonym: "posterior tuberculum" EXACT [] xref: TAO:0000633 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: has_developmental_contribution_from ZFA:0005909 ! presumptive preglomerular region relationship: part_of ZFA:0000101 ! diencephalon relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000634 name: caudal hypothalamic zone namespace: zebrafish_anatomy def: "Multi-tissue structure which forms most of the median tuberal portion of the hypothalamus. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "hypothalamus pars tuberalis " EXACT [ZFIN:ZDB-PUB-961014-1280] synonym: "tuberal hypothalamus" EXACT [ZFIN:ZDB-PUB-961014-1280] is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000392 ! median tuberal portion relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000635 name: central pretectal nucleus namespace: zebrafish_anatomy def: "Diencephalic nucleus that is part of the central pretectum and is dorsal to the magnocellular superficial pretectal nucleus and the caudal pretectal nucleus. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "nucleus praetectalis centralis" EXACT [] xref: TAO:0000635 is_a: ZFA:0001659 ! diencephalic nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000183 ! central pretectum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000636 name: cerebellar crest namespace: zebrafish_anatomy def: "Portion of tissue composed of parallel fibers that originate at the granular eminence that overlays the rhombencephalic lateral line region. Also termed the molecular layer." [GOC:ymb, ISBN:3540560130, ORCiD:0000-0002-9900-7880] comment: Not sure how much of the molecular layer is cerebellar crest. synonym: "crista cerebellaris molecular layer" EXACT [ZFIN:ZDB-PUB-961014-1280] xref: TAO:0000636 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000291 ! medial octavolateralis nucleus relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000637 name: claustrum cartilage namespace: zebrafish_anatomy def: "Postcranial axial cartilage and Weberian ossicle that is located dorsal to the scaphium. The claustrum is bilaterally paired." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0000637 is_a: ZFA:0001457 ! postcranial axial cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000461 ! Weberian ossicle relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0000638 name: commissura rostral, pars dorsalis namespace: zebrafish_anatomy def: "Anterior commissure which is located immediately ventral to the supracommissural nucleus of area ventralis telencephali. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209] synonym: "commissura anterior, pars dorsalis" EXACT [] xref: TAO:0000638 is_a: ZFA:0001108 ! anterior commissure relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000639 name: commissure of the secondary gustatory nucleus namespace: zebrafish_anatomy def: "Cerebellar commissure that runs between the bulbo-spinal tract and the vestibulo-spinal tract." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "commissura nucleorum gustatoriorum secundariorum" EXACT [] synonym: "commissure of the secondary gustatory nuclei" RELATED [] xref: TAO:0000639 is_a: ZFA:0001708 ! cerebellar white matter relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001101 ! gustatory system relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000640 name: cornea namespace: zebrafish_anatomy def: "Multi-tissue structure that forms the transparent front part of the eye, covering the iris, pupil and anterior chamber." [GOC:mh, http://www.encyclopedia.thefreedictionary.com/cornea, ORCiD:0000-0001-9114-8737] synonym: "corneas" EXACT PLURAL [] xref: TAO:0000640 is_a: ZFA:0001488 ! multi-tissue structure relationship: develops_from ZFA:0001688 ! corneal primordium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005566 ! anterior segment eye relationship: start ZFS:0000034 ! Hatching:Pec-fin [Term] id: ZFA:0000641 name: cranial nerve namespace: zebrafish_anatomy def: "Twelve pairs of cranial nerves exit/enter the cranium through openings in the skull. The nerves contain efferent axons with motor and glandular functions, as well as afferent axons from cranial ganglia with sensory functions. The nerves are numbered in a rostral to caudal sequence, with the exception of the lateral line nerves." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "cranial nerves" EXACT PLURAL [] xref: TAO:0000641 is_a: ZFA:0007009 ! nerve relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000642 name: decussation of the medial octavolateralis nucleus namespace: zebrafish_anatomy xref: TAO:0000642 is_a: ZFA:0000318 ! brainstem and spinal white matter relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000381 ! lateral line sensory nucleus relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000643 name: rostral cerebellar tract namespace: zebrafish_anatomy def: "CNS white matter comprised of the rostral mesencephalo-cerebellar and caudal mesencephalo-cerebellar tracts. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "anterior cerebellar tract" EXACT [] synonym: "tractus cerebellaris anterior" EXACT [] xref: TAO:0000643 is_a: ZFA:0001682 ! white matter relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000100 ! cerebellum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000644 name: dental plate namespace: zebrafish_anatomy comment: "Dermal tooth plates are variable structures. During upper pharyngeal arch development in Astatotilapia elegans, dermal tooth plates are formed entirely of fused tooth pedicels (Huys-seune, 1983). However, in lower pharyngeals of the same species, teeth attach to a preexisting plate (Vandewalle et al., 1994). In other teleosts (e.g., cyprinid fifth ceratobranchials), there is no tooth plate per se, because tooth pedicels do not fuse to one another, but each fuses to the endochondral bone separately (see Gosline, 1985)."\nConsider ZFA:0001239 ceratobranchial 5 bone or ZFA:0000694 ceratobranchial 5 tooth synonym: "dental plates" EXACT PLURAL [] xref: TAO:0000644 is_obsolete: true [Term] id: ZFA:0000645 name: descending octaval nucleus namespace: zebrafish_anatomy synonym: "nucleus octavus descendens" EXACT [] xref: TAO:0000645 is_a: ZFA:0000401 ! octaval nerve sensory nucleus relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000646 name: anal fin distal radial namespace: zebrafish_anatomy def: "Rod-like internal median skeletal support bones of the anal fin, which articulate with the lepidotrichia distally." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "anal fin distal radials" EXACT PLURAL [] xref: TAO:0000646 is_a: ZFA:0001646 ! anal fin radial relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001420 ! anal fin pterygiophore relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000647 name: dorsal caudal thalamic nucleus namespace: zebrafish_anatomy def: "Diencephalic nucleus which is located in the caudal portion of the dorsal thalamus, dorsal to the central caudal thalamic nucleus." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "dorsal posterior thalamic nucleus" EXACT [] synonym: "nucleus dorsalis posterior thalami" EXACT [] xref: TAO:0000647 is_a: ZFA:0001659 ! diencephalic nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000653 ! dorsal thalamus relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000648 name: dorsal fin musculature namespace: zebrafish_anatomy def: "Musculature that is part of the dorsal fin. The dorsal fin musculature is composed of one unit per fin ray that are arranged in series on each side of the body. Each unit is composed of one fin ray, three supporting pterygophores, and a set of paired depressor, erector, and inclinator muscles." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-060623-21] xref: TAO:0000648 is_a: ZFA:0000207 ! fin musculature relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001173 ! dorsal fin relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0000649 name: dorsal horn spinal cord namespace: zebrafish_anatomy synonym: "cornu dorsale" EXACT [] synonym: "dorsal horn" EXACT [] xref: TAO:0000649 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000075 ! spinal cord relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000650 name: dorsal motor root of V namespace: zebrafish_anatomy synonym: "dorsal motor roots of V" EXACT PLURAL [] xref: TAO:0000650 is_a: ZFA:0001663 ! cranial nerve root relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000651 name: dorsal pelvic arrector namespace: zebrafish_anatomy def: "Dorsal pelvic fin muscle that originates at the anterior side of the basipterygium and inserts onto the base of the first pelvic fin ray." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-171118-8] synonym: "arrector dorsalis pelvicus" EXACT [ZFIN:ZDB-PUB-171118-8] synonym: "dorsal pelvic arrectors" EXACT PLURAL [] xref: TAO:0000651 is_a: ZFA:0005275 ! arrector muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000258 ! pelvic fin musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000652 name: dorsal root namespace: zebrafish_anatomy def: "The afferent sensory portion of the spinal nerve root." [http://en.wikipedia.org/wiki/Dorsal_root] synonym: "radix dorsalis" EXACT [] xref: TAO:0000652 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005578 ! spinal nerve root relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000653 name: dorsal thalamus namespace: zebrafish_anatomy def: "Multi-tissue structure that is the dorsal part of the thalamus and emerges ventral to the caudal portion of the ventral habenular nucleus. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "thalamus" RELATED [ZFIN:ZDB-PUB-100621-4] synonym: "thalamus, pars dorsalis" EXACT [] xref: TAO:0000653 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001215 ! thalamus relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000654 name: rostral motor nucleus namespace: zebrafish_anatomy def: "Abducens motor nucleus which is located at the level of the superior reticular formation." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0000654 is_a: ZFA:0000713 ! abducens motor nucleus relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000655 name: dorsomedial optic tract namespace: zebrafish_anatomy synonym: "tractus opticus dorsomedialis" EXACT [] xref: TAO:0000655 is_a: ZFA:0000338 ! diencephalic white matter relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000252 ! optic tract relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000656 name: ectopterygoid namespace: zebrafish_anatomy def: "The ectopterygoid is dermal bone located at the anterior part of the palatoquadrate. It is first visible as a very thin ossification along the anteroventral border of the palatoquadrate cartilage (6.4 mm). In adults it is a long sliver of bone that is narrow anteriorly where it meets the entopterygoid in a synostosis. It is slightly wider at its posterior synostosis with the quadrate." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "ectopterygoids" EXACT PLURAL [] xref: TAO:0000656 is_a: ZFA:0001590 ! dermal bone relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000863 ! dermatocranium relationship: part_of ZFA:0001272 ! palatoquadrate arch relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000657 name: entopterygoid namespace: zebrafish_anatomy def: "The entopterygoid is a dermal bone that forms the anteroventral and ventral surface of the orbit. It develops as a long sliver of bone developing in the membrane dorsomedial to the palatoquadrate cartilage (3.8 mm NL)." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "endopterygoid" EXACT [] synonym: "mesopterygoid" EXACT [] xref: TAO:0000657 is_a: ZFA:0001590 ! dermal bone relationship: end ZFS:0000044 ! Adult relationship: overlaps ZFA:0005616 ! quadrate-entopterygoid joint relationship: part_of ZFA:0000863 ! dermatocranium relationship: part_of ZFA:0001272 ! palatoquadrate arch relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000658 name: epibranchial bone namespace: zebrafish_anatomy def: "Pharyngeal arch bone that is bilaterally paired and articulates laterally with ceratobranchial cartilage or bone. Epibranchials are dorsal parts of the gill arches. Epibranchials 1-4 ossify in the epibranchial cartilages in a posterior to anterior progression. Gill rakers are present on the anterior and posterior edges of epibranchials 2 and 4 and the posterior edge of epibranchial 1. A reduced gill raker is present on the anterior margin of epibranchial 1 in some specimens." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "epibranchial bones" EXACT PLURAL [] xref: TAO:0000658 is_a: ZFA:0001591 ! endochondral bone relationship: develops_from ZFA:0001527 ! epibranchial cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000095 ! pharyngeal arch 3-7 skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000660 name: epural namespace: zebrafish_anatomy def: "A free, modified neural spine of a preural or a ural vertebra that is placed between the last developed neural spine of a preural centrum and the dorsal axis (= anterior margin of first uroneural) of the caudal skeleton . An epural commonly supports one or more dorsal procurrent rays. An epural is an unpaired median perichondrally ossified bone." [TAO:curator] xref: TAO:0000660 is_a: ZFA:0001336 ! neural spine relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000862 ! caudal fin skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000661 name: exoccipital namespace: zebrafish_anatomy def: "Paired cartilage bone that bears a large foramen (lateral occipital foramen). Contacts the supraoccipital dorsally, the epiotic laterally and the basioccipital ventrally. Forms the posterior hind margin of the cranium and borders the lateral and posterior margins of the forum (foramen) magnum." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "exoccipitals" EXACT PLURAL [] xref: TAO:0000661 is_a: ZFA:0001591 ! endochondral bone relationship: develops_from ZFA:0001423 ! parachordal cartilage relationship: develops_from ZFA:0001504 ! occipital arch cartilage relationship: end ZFS:0000044 ! Adult relationship: overlaps ZFA:0005423 ! basioccipital-exoccipital joint relationship: part_of ZFA:0001414 ! occipital region relationship: part_of ZFA:0001424 ! chondrocranium relationship: part_of ZFA:0001580 ! neurocranium relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0000662 name: external pharyngoclavicularis namespace: zebrafish_anatomy synonym: "external pharyngoclavicularae" EXACT PLURAL [] xref: TAO:0000662 is_a: ZFA:0000172 ! branchial muscle relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000663 name: extrascapula namespace: zebrafish_anatomy alt_id: ZFA:0001413 def: "Dermal canal-bearing bone placed at the dorso-posterior region of the skull roof, lying on the posterior region of the pterotic and parietals, or the pterotic and epioccipital, or on the pterotic, epioccipital and occipital bones." [TAO:curator] synonym: "supratemporal" EXACT [] synonym: "tabular" EXACT [] xref: TAO:0000663 is_a: ZFA:0001590 ! dermal bone relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000407 ! pectoral girdle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000664 name: cranial nerve VII namespace: zebrafish_anatomy def: "Cranial nerve where motor axons innervate muscles derived from the second branchial arch. The motor neurons are generated in rhombomere 4." [ZFIN:ZDB-PUB-040109-20] synonym: "CN-VII" EXACT [] synonym: "facial nerve" EXACT [] synonym: "nervus facialis" EXACT [] xref: TAO:0000664 is_a: ZFA:0000641 ! cranial nerve relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001101 ! gustatory system relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000665 name: rostral root of abducens nerve namespace: zebrafish_anatomy xref: TAO:0000665 is_a: ZFA:0001663 ! cranial nerve root relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000310 ! cranial nerve VI relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000666 name: filamental artery namespace: zebrafish_anatomy def: "Artery of the gill filament." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "filamental arteries" EXACT PLURAL [] xref: TAO:0000666 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000667 ! gill filament relationship: part_of ZFA:0005003 ! pharyngeal vasculature relationship: start ZFS:0000035 ! Larval:Protruding-mouth [Term] id: ZFA:0000667 name: gill filament namespace: zebrafish_anatomy def: "Portion of tissue that projects outward from the gill and is a thread-like, soft, red respiratory and excretory structure." [GOC:mh, http://www.briancoad.com/Dictionary/G.htm, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-576] synonym: "gill filaments" EXACT PLURAL [] xref: TAO:0000667 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000354 ! gill relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000668 name: cranial nerve IX namespace: zebrafish_anatomy def: "Cranial nerve that innervates gill muscles." [ZFIN:ZDB-PUB-040109-20] synonym: "CN-IX" EXACT [] synonym: "glossopharyngeal nerve" EXACT [] synonym: "nervus glossopharyngeus" EXACT [] xref: TAO:0000668 is_a: ZFA:0000641 ! cranial nerve relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001101 ! gustatory system relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000669 name: head kidney namespace: zebrafish_anatomy def: "The zebrafish head kidney consists of fused bilateral lobes located in the anterior part of the kidney. It is analogous to the mammalian bone marrow and the primary site of definitive hematopoiesis." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-040923-1] synonym: "anterior kidney" EXACT [] synonym: "kidney marrow" EXACT [] xref: TAO:0000669 is_a: ZFA:0000496 ! compound organ relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000529 ! kidney relationship: part_of ZFA:0001158 ! endocrine system relationship: part_of ZFA:0005023 ! hematopoietic system relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000670 name: hepatic vein namespace: zebrafish_anatomy def: "Vein that carries blood away from the liver." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "hepatic veins" EXACT PLURAL [] xref: TAO:0000670 is_a: ZFA:0000082 ! vein relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000123 ! liver relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000671 name: horizontal myoseptum namespace: zebrafish_anatomy def: "A connective tissue partition developing at the apex of the chevron-shaped myotome and separating dorsal (epaxial) and ventral (hypaxial) body wall muscle masses." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-576] synonym: "horizontal septum" EXACT [] xref: TAO:0000671 is_a: ZFA:0001089 ! myoseptum relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000672 name: hyomandibula namespace: zebrafish_anatomy def: "The hyomandibula is the large, dorsal-most member of the hyoid arch. It begins ossifying in the dorsal edge of the hyosymplectic cartilage near the hyomandibular foramen (4.6 mm NL). Ossification spreads through the cartilage, and sheets of membrane bone form off the cartilage model anteriorly and posteriorly (6.6 mm). In the adult, the hyomandibula has cartilage-capped anterior and posterior articulating heads that meet the sphenotic-prootic fossa and the pterotic fossa, respectively, in synovial joints. A posterior knob of bone develops, also capped in cartilage, and it forms a synovial joint with the opercle." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "hyomandibular" EXACT [] xref: TAO:0000672 is_a: ZFA:0001591 ! endochondral bone relationship: develops_from ZFA:0001422 ! hyosymplectic cartilage relationship: end ZFS:0000044 ! Adult relationship: overlaps ZFA:0005469 ! hyomandibula-metapterygoid joint relationship: overlaps ZFA:0005632 ! preopercle vertical limb-hyomandibula joint relationship: part_of ZFA:0001401 ! dorsal hyoid arch relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000673 name: hypobranchial artery namespace: zebrafish_anatomy def: "A pair of HA are connect one to each AA1. They run rostromedially until at the extreme rostro-ventral midline the two vessels merge and then run straight caudally along the ventral midline until they reach the cranial end of the ventral aorta (VA). There, the single HA passes just dorsal to the rostral end of the VA and then immediately splits again into a pair of HA. The paired HA continue caudally just to either side of the ventral midline. The HA provide blood supply to the ventral branchial region and the heart." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5] synonym: "HA" EXACT [] xref: TAO:0000673 is_a: ZFA:0000005 ! artery relationship: develops_from ZFA:0005005 ! aortic arch 1 relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000035 ! Larval:Protruding-mouth [Term] id: ZFA:0000674 name: interopercle namespace: zebrafish_anatomy def: "Dermal bone that is located anterior to the subopercle and lying below and slightly ventral to the horizontal limb of the preopercle. The interopercle is a paired bone." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "interopercles" EXACT PLURAL [] xref: TAO:0000674 is_a: ZFA:0001590 ! dermal bone relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000555 ! opercular flap relationship: part_of ZFA:0000863 ! dermatocranium relationship: part_of ZFA:0001401 ! dorsal hyoid arch relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000676 name: sagitta namespace: zebrafish_anatomy alt_id: ZFA:0001103 def: "Otolith that is part of the sacculus." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-020403-4] synonym: "immature posterior otolith" RELATED [] synonym: "saccular otolith" EXACT [] synonym: "sacculith" EXACT [] xref: TAO:0000676 is_a: ZFA:0001617 ! otolith relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000428 ! saccule relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000677 name: segmental intercostal artery namespace: zebrafish_anatomy synonym: "segmental intercostal arteries" EXACT PLURAL [] xref: TAO:0000677 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000678 name: hair cell anterior macula namespace: zebrafish_anatomy def: "Specialized neuronal receptor cells of the anterior macula. (Also see Anatomical Atlas entry for hair cells by T. Whitfield.)" [MESH:68018069, ZFIN:ZDB-PUB-961014-576] subset: cell_slim synonym: "sensory hair cells anterior macula" EXACT PLURAL [] xref: TAO:0000678 is_a: ZFA:0009366 ! hair cell relationship: develops_from ZFA:0001098 ! immature hair cell anterior macula relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000168 ! anterior macula relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000679 name: sensory root of facial nerve namespace: zebrafish_anatomy synonym: "sensory roots of facial nerves" EXACT PLURAL [] xref: TAO:0000679 is_a: ZFA:0001663 ! cranial nerve root relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000680 name: sinoatrial valve namespace: zebrafish_anatomy def: "Heart valve that forms between the atrium and the sinus venosus." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] synonym: "sinoatrial valves" EXACT PLURAL [] xref: TAO:0000680 is_a: ZFA:0005065 ! heart valve relationship: develops_from ZFA:0001317 ! endocardial cushion relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000154 ! sinus venosus relationship: part_of ZFA:0000471 ! atrium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000681 name: neural postzygapophysis namespace: zebrafish_anatomy def: "Paired, dorsomedially directed processes on the posterior ends of the centra, ligamentously joined to the neural prezygapophyses of the immediately posterior vertebra." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "neural postzygapophyses" EXACT PLURAL [] synonym: "neural postzygopophysis" EXACT [] xref: TAO:0000681 is_a: ZFA:0001591 ! endochondral bone relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001066 ! neural arch relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000682 name: spinal artery namespace: zebrafish_anatomy synonym: "spinal arteries" EXACT PLURAL [] xref: TAO:0000682 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000683 name: subcommissural organ namespace: zebrafish_anatomy def: "Diencephalic nucleus that is part of the synencephalon, is located adjacent to the caudal commissure and contains ciliated neurosecretory ependymal cells. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "SCO" EXACT [] xref: TAO:0000683 is_a: ZFA:0001659 ! diencephalic nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000293 ! synencephalon relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000684 name: intertectal commissure namespace: zebrafish_anatomy def: "CNS white matter (commissure) that runs between the optic tectal hemispheres." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0000684 is_a: ZFA:0001682 ! white matter relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000445 ! optic tectum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000685 name: superficial abductor namespace: zebrafish_anatomy def: "Abductor muscle that develops from the primitive pectoral fin abductor. The abductor superficialis originates along the anterior skeletal flange of the pectoral girdle, the bundles insert to fin ray base distal processes." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-050920-7] synonym: "abductor superficialis" EXACT [ZFIN:ZDB-PUB-050920-7] synonym: "superficial abductors" EXACT PLURAL [] xref: TAO:0000685 is_a: ZFA:0005269 ! abductor muscle relationship: develops_from ZFA:0005651 ! primitive pectoral fin abductor relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000563 ! pectoral fin musculature relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0000686 name: superficial grey and white zone namespace: zebrafish_anatomy synonym: "superficial gray and white zone" EXACT [] synonym: "superficial grey and white zones" EXACT PLURAL [] xref: TAO:0000686 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000445 ! optic tectum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000687 name: superficial pretectum namespace: zebrafish_anatomy def: "Multi-tissue structure that is the superficial part of the pretectum and is embedded in the optic tract." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0000687 is_a: ZFA:0001488 ! multi-tissue structure relationship: develops_from ZFA:0005908 ! presumptive pretectum proliferative zone relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000418 ! pretectum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000688 name: olfactory support cell namespace: zebrafish_anatomy def: "Supporting cell that is part of the olfactory epithelium. Their cell bodies are more or less cylindrical, often with a pronounced basal part resting on the basal lamina. Their apical surface is covered with microvillous-like protrusions. Nuclei of olfactory support cell lie below the nuclear layer of olfactory sensory neurons, a feature that is reverse that of other vertebrates. The nuclei are less electron dense then those of the olfactory sensory neurons." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-060724-7] comment: Different nuclear position and morphology from CL_0000853. subset: cell_slim synonym: "support cells" RELATED PLURAL [] xref: TAO:0000688 is_a: ZFA:0009000 ! cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000047 ! peripheral olfactory organ relationship: start ZFS:0000038 ! Larval:Day 6 [Term] id: ZFA:0000689 name: supracommissural nucleus of ventral telencephalon namespace: zebrafish_anatomy def: "Periventricular nucleus which is contiguous with the caudal part of the dorsal nucleus of the ventral telencephalon and the postcommissural nucleus. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "area ventralis telencephali, nucleus supracommissuralis" EXACT [] synonym: "supracommissural nucleus of V" EXACT [] xref: TAO:0000689 is_a: ZFA:0001666 ! periventricular nucleus of ventral telencephalon relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000690 name: supraoptic commissure namespace: zebrafish_anatomy xref: TAO:0000690 is_a: ZFA:0000338 ! diencephalic white matter relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000691 name: supraorbital bone namespace: zebrafish_anatomy def: "Paired dermal bones that form the anterodorsal margin of the orbit." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "supraorbital bones" EXACT PLURAL [] xref: TAO:0000691 is_a: ZFA:0001590 ! dermal bone relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000863 ! dermatocranium relationship: part_of ZFA:0001410 ! orbital region relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000692 name: symplectic namespace: zebrafish_anatomy def: "The symplectic is an irregularly rod-shaped cartilage replacement bone articulating with the hyomandibular and quadrate." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "symplectics" EXACT PLURAL [] xref: TAO:0000692 is_a: ZFA:0001591 ! endochondral bone relationship: develops_from ZFA:0001422 ! hyosymplectic cartilage relationship: end ZFS:0000044 ! Adult relationship: overlaps ZFA:0005631 ! preopercle horizontal limb-symplectic joint relationship: part_of ZFA:0001401 ! dorsal hyoid arch relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000693 name: tangential nucleus namespace: zebrafish_anatomy def: "The tangential nucleus is located in rhombomere 5 and receives a dense utricular input. Tangential nucleus neurons project contralaterally to extraocular motoneurons and to multiple sites within the reticulospinal complex; unlike other classes of vestibular neuron, they modulate their firing in response to static head displacements." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-120702-13, ZFIN:ZDB-PUB-160324-18] xref: TAO:0000693 is_a: ZFA:0000401 ! octaval nerve sensory nucleus relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000694 name: ceratobranchial 5 tooth namespace: zebrafish_anatomy def: "Is a multi-tissue structure composed of dentine, enameloid and tooth pulp. The tips of the ceratobranchial5 teeth form before the ceratobranchial itself (3.0 mm NL). As they grow ventrally, they meet the perichondrally ossified surface of ceratobranchial5 and become firmly ankylosed to the bone. Ceratobranchial teeth are the only teeth present in zebrafish and other cypriniforms." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "pharyngeal tooth" EXACT [] synonym: "teeth" EXACT PLURAL [] synonym: "tooth" EXACT [] xref: TAO:0000694 is_a: ZFA:0001488 ! multi-tissue structure relationship: develops_from ZFA:0005138 ! dental organ relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000056 ! pharynx relationship: part_of ZFA:0001239 ! ceratobranchial 5 bone relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0000695 name: labial cavity namespace: zebrafish_anatomy def: "The anatomical space located between the lips and the oral valves." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "labial cavities" EXACT PLURAL [] xref: TAO:0000695 is_a: ZFA:0001643 ! anatomical space relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000339 ! digestive system relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000696 name: telencephalic ventricle namespace: zebrafish_anatomy synonym: "lateral ventricle" EXACT [] synonym: "telencephalic vesicle" EXACT [] synonym: "ventriculi telencephali " EXACT [ZFIN:ZDB-PUB-961014-1280] xref: TAO:0000696 is_a: ZFA:0001488 ! multi-tissue structure relationship: develops_from ZFA:0001259 ! forebrain ventricle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000079 ! telencephalon relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000697 name: cranial nerve V namespace: zebrafish_anatomy def: "Cranial nerve which exits the medulla oblongata and carries both sensory and motor axons to and from the facial region." [GOC:mh, ORCiD:0000-0001-9114-8737] comment: ZDB-PUB-040109-20\nThe motor neuron cell bodies arise in rhombomeres 2 and 3. The neurons in r2 extend axons dorsolaterally to their exit point. The axons of branchiomotor neuron cell bodies in r3 initially extend dorsolaterally, then turn rostrally to reach their exit point in r2. The anterior turn occurs where the motor axons meet the ingrowing trigeminal sensory axons. synonym: "CN-V" EXACT [] synonym: "trigeminal nerve" EXACT [] xref: TAO:0000697 is_a: ZFA:0000641 ! cranial nerve relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000698 name: tripus namespace: zebrafish_anatomy def: "The fourth Weberian ossicle. The tripus is a complex modification of the parapophysis and rib of the third vertebra. Anteriorly it attaches to the interosseus ligament and posteriorly it extends as a transformator process embedded in the tunica externa of the swim bladder." [ZFIN:ZDB-PUB-031103-13] xref: TAO:0000698 is_a: ZFA:0001591 ! endochondral bone is_a: ZFA:0001636 ! membrane bone relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000461 ! Weberian ossicle relationship: part_of ZFA:0001169 ! vertebra 3 relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0000699 name: ural ossification namespace: zebrafish_anatomy comment: Ural ossification is a process not a structure, thus it belongs in GO biologyical process not ZFA. is_obsolete: true [Term] id: ZFA:0000700 name: utricle namespace: zebrafish_anatomy def: "Otolith organ comprised of the macula utricle and lapillus. The lagena is part of the pars superior. The utricle functions in the detection of movement." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "utriculus" EXACT [] xref: TAO:0000700 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000559 ! otolith organ relationship: part_of ZFA:0005409 ! pars superior ear relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000701 name: ventral arrector namespace: zebrafish_anatomy def: "Muscle that is important in controlling the leading edge of the pectoral fin in the juvenile zebrafish, particularly during the initiation of the downstroke." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-050920-7] comment: Acts as antagonist to the dorsal arrector. synonym: "arrector ventralis" EXACT [ZFIN:ZDB-PUB-050920-7] synonym: "ventral arrectors" EXACT PLURAL [] xref: TAO:0000701 is_a: ZFA:0005275 ! arrector muscle relationship: develops_from ZFA:0005651 ! primitive pectoral fin abductor relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000563 ! pectoral fin musculature relationship: start ZFS:0000040 ! Larval:Days 14-20 [Term] id: ZFA:0000702 name: ventral horn spinal cord namespace: zebrafish_anatomy synonym: "ventral horns spinal cord" EXACT PLURAL [] xref: TAO:0000702 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000075 ! spinal cord relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000703 name: ventral motor nucleus trigeminal nerve namespace: zebrafish_anatomy def: "Trigeminal motor nucleus that is located at the ventrolateral edge of the lateral longitudinal fascicle." [ISBN:3764351209] xref: TAO:0000703 is_a: ZFA:0001365 ! trigeminal motor nucleus relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000704 name: ventral pelvic arrector namespace: zebrafish_anatomy def: "Deep, narrow muscle that arises anteriorly and laterally of the pelvic abductor profundus. It attaches to the first pelvic ray." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-171118-8v] synonym: "ventral pelvic arrectors" EXACT PLURAL [] xref: TAO:0000704 is_a: ZFA:0005275 ! arrector muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000258 ! pelvic fin musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000705 name: ventral root namespace: zebrafish_anatomy def: "The efferent motor portion of the spinal nerve root." [http://en.wikipedia.org/wiki/Nerve_root] synonym: "ventral roots" EXACT PLURAL [] xref: TAO:0000705 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005578 ! spinal nerve root relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000706 name: posterior intestine namespace: zebrafish_anatomy def: "The posterior intestine has short longitudinally arranged epithelial folds which are similar to the colon of higher vertebrates." [ZFIN:ZDB-PUB-050120-6] xref: TAO:0000706 is_a: ZFA:0001488 ! multi-tissue structure relationship: develops_from ZFA:0005737 ! intestinal rod relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001338 ! intestine relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0000707 name: ventral hypothalamic zone namespace: zebrafish_anatomy def: "Multi-tissue structure which is the ventral region of the median tuberal portion of the hypothalamus and is the most rostral region of the hypothalamus. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] xref: TAO:0000707 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000392 ! median tuberal portion relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000708 name: ventrolateral optic tract namespace: zebrafish_anatomy synonym: "ventrolateral optic tracts" EXACT PLURAL [] xref: TAO:0000708 is_a: ZFA:0000338 ! diencephalic white matter relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000252 ! optic tract relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000709 name: vestibulo-spinal tract namespace: zebrafish_anatomy synonym: "vestibulo-spinal tracts" EXACT PLURAL [] xref: TAO:0000709 is_a: ZFA:0000318 ! brainstem and spinal white matter relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000710 name: viscerosensory commissural nucleus of Cajal namespace: zebrafish_anatomy synonym: "commissural nucleus of Cajal" EXACT [] synonym: "nucleus commissuralis Cajal" EXACT [] xref: TAO:0000710 is_a: ZFA:0001658 ! hindbrain nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000711 name: DEL namespace: zebrafish_anatomy def: "A multilayer of deep cells of fairly uniform thickness that forms during early epiboly (at dome stage; upon conversion of the blastodisc to the blastoderm); during gastrulation the DEL (deep cell layer) gives rise to the epiblast and hypoblast." [ZFIN:ZDB-PUB-961014-576] synonym: "deep cell layer" EXACT [ZFIN:ZDB-PUB-961014-576] synonym: "DEL cells" EXACT PLURAL [] xref: TAO:0000711 is_a: ZFA:0001105 ! embryonic structure relationship: develops_from ZFA:0001473 ! deep blastomere relationship: end ZFS:0000022 ! Gastrula:Bud relationship: part_of ZFA:0001176 ! blastoderm relationship: start ZFS:0000016 ! Blastula:30%-epiboly [Term] id: ZFA:0000712 name: internal yolk syncytial layer namespace: zebrafish_anatomy def: "The portion of the YSL that lies deep to the blastoderm during epiboly." [ZFIN:ZDB-PUB-961014-576] synonym: "I-YSL" EXACT [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000712 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000030 ! Pharyngula:Prim-15 relationship: part_of ZFA:0000088 ! yolk syncytial layer relationship: start ZFS:0000013 ! Blastula:Oblong [Term] id: ZFA:0000713 name: abducens motor nucleus namespace: zebrafish_anatomy def: "Hindbrain motor nucleus which is the origin of motor axons of cranial nerve VI. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "abducens motor nuclei" EXACT PLURAL [] synonym: "abducens nucleus" EXACT [] synonym: "motor nucleus VI" EXACT [] synonym: "nVI" EXACT [] xref: TAO:0000713 is_a: ZFA:0001658 ! hindbrain nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000714 name: accessory pretectal nucleus namespace: zebrafish_anatomy def: "Diencephalic nucleus that is part of the central pretectum and lies dorsolateral to the caudal pretectal nucleus. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "APN" EXACT [] synonym: "nucleus praetectalis accessorius" EXACT [] xref: TAO:0000714 is_a: ZFA:0001659 ! diencephalic nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000183 ! central pretectum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000715 name: adductor hyohyoid namespace: zebrafish_anatomy def: "Hyoid muscle that originates at the opercle and subopercle and inserts into the branchiostegal rays. The adductor hyohyoid is responsible for constriction of the branchiostegal membrane." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-080306-33] synonym: "adductors hyohyoid" EXACT PLURAL [] synonym: "hyohyoidei adductores" EXACT [] xref: TAO:0000715 is_a: ZFA:0000521 ! hyoid muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0007052 ! hyohyoideus relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000716 name: afferent branchial artery namespace: zebrafish_anatomy def: "Artery that is part of the pharyngeal arches 3-5, and forms the afferent portion of a loop off of the aortic arch." [ZFIN:ZDB-PUB-010205-5] synonym: "ABA" EXACT [] xref: TAO:0000716 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000354 ! gill relationship: part_of ZFA:0005003 ! pharyngeal vasculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000717 name: apical ectodermal ridge median fin fold namespace: zebrafish_anatomy def: "Apical ectodermal ridge that is part of the median fin fold." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0000717 is_a: ZFA:0001702 ! apical ectodermal ridge relationship: end ZFS:0000037 ! Larval:Day 5 relationship: part_of ZFA:0000040 ! median fin fold relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0000718 name: epaxial region somite 27 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000718 is_a: ZFA:0001084 ! epaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000931 ! myotome somite 27 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000719 name: slow muscle cell somite 21 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 21." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "slow muscle cells somite 21" EXACT PLURAL [] xref: TAO:0000719 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000929 ! myotome somite 21 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000720 name: slow muscle cell somite 24 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 24." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "slow muscle cells somite 24" EXACT PLURAL [] xref: TAO:0000720 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000930 ! myotome somite 24 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000721 name: slow muscle cell somite 27 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 27." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "slow muscle cells somite 27" EXACT PLURAL [] xref: TAO:0000721 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000931 ! myotome somite 27 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000722 name: slow muscle cell somite 3 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 3." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "slow muscle cells somite 3" EXACT PLURAL [] xref: TAO:0000722 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000932 ! myotome somite 3 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000723 name: slow muscle cell somite 5 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 5." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "slow muscle cells somite 5" EXACT PLURAL [] xref: TAO:0000723 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000933 ! myotome somite 5 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000724 name: slow muscle cell somite 8 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 8." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "slow muscle cells somite 8" EXACT PLURAL [] xref: TAO:0000724 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000934 ! myotome somite 8 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000725 name: somite 11 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576] xref: TAO:0000725 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000726 name: somite 14 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576] xref: TAO:0000726 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000727 name: somite 17 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576] xref: TAO:0000727 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000728 name: somite 2 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576] xref: TAO:0000728 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0000729 name: epaxial region somite 3 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000729 is_a: ZFA:0001084 ! epaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000932 ! myotome somite 3 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000730 name: somite 23 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576] xref: TAO:0000730 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000731 name: somite 27 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576] xref: TAO:0000731 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000732 name: somite 3 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576] xref: TAO:0000732 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0000733 name: somite 7 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576] xref: TAO:0000733 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000734 name: preural vertebra namespace: zebrafish_anatomy def: "Vertebra which are the three most posterior vertebra supporting the caudal fin." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "caudal fin vertebra" EXACT [] synonym: "specialized centra/vertebrae" EXACT PLURAL [] xref: TAO:0000734 is_a: ZFA:0000326 ! caudal vertebra relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000862 ! caudal fin skeleton relationship: start ZFS:0000037 ! Larval:Day 5 [Term] id: ZFA:0000735 name: hemal postzygapophysis namespace: zebrafish_anatomy def: "Paired, ventromedially directed processes on the posterior ends of the centra, ligamentously joined to the hemal postzygapophyses of the immediately posterior vertebra. The most posterior caudal vertebrae lack hemal postzygapophyses." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "haemal postzygapophysis" EXACT [] synonym: "hemal postzygapophyses" EXACT PLURAL [] synonym: "hemal postzygopophysis" EXACT [] xref: TAO:0000735 is_a: ZFA:0001591 ! endochondral bone relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000519 ! hemal arch relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000737 name: cranium namespace: zebrafish_anatomy def: "Skeletal system that is part of the head, including the splanchnocranium, chondrocranium, and dermatocranium." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "cranial skeleton" EXACT [] xref: TAO:0000737 is_a: ZFA:0000434 ! skeletal system relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001114 ! head relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000738 name: dorsal oblique extraocular muscle namespace: zebrafish_anatomy def: "Extraocular muscle innervated by the trochlear nerve. The dorsal rectus and dorsal oblique muscles have overlapping insertions at the scleral-corneal junction on the dorsal side of the adult eye, though they have distinct insertion sites in 5dpf fish. The dorsal oblique originates separately from the rectus muscles. The unsegmented paraxial head mesoderm contributes to the dorsal oblique muscles. All the oblique extraocular muscles originate together from the anterior ethmoid plate." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-110512-18, ZFIN:ZDB-PUB-111205-9] comment: Mature form at Larval:Protruding-mouth. synonym: "dorsal oblique extraocular muscles" EXACT PLURAL [] synonym: "superior oblique muscle" EXACT [ZFIN:ZDB-PUB-110512-18] xref: TAO:0000738 is_a: ZFA:0005145 ! muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000511 ! extraocular musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000739 name: epaxial region somite 11 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000739 is_a: ZFA:0001084 ! epaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000801 ! myotome somite 11 relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000740 name: epaxial region somite 5 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000740 is_a: ZFA:0001084 ! epaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000933 ! myotome somite 5 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000741 name: epaxial region somite 14 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000741 is_a: ZFA:0001084 ! epaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000044 ! myotome somite 14 relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000742 name: epaxial region somite 17 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000742 is_a: ZFA:0001084 ! epaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001015 ! myotome somite 17 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000743 name: epaxial region somite 2 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000743 is_a: ZFA:0001084 ! epaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001016 ! myotome somite 2 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000744 name: epaxial region somite 22 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000744 is_a: ZFA:0001084 ! epaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001017 ! myotome somite 22 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000745 name: epaxial region somite 25 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000745 is_a: ZFA:0001084 ! epaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001018 ! myotome somite 25 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000746 name: epaxial region somite 28 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000746 is_a: ZFA:0001084 ! epaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001019 ! myotome somite 28 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000747 name: epaxial region somite 30 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000747 is_a: ZFA:0001084 ! epaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001020 ! myotome somite 30 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000748 name: epaxial region somite 6 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000748 is_a: ZFA:0001084 ! epaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001021 ! myotome somite 6 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000749 name: epaxial region somite 9 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000749 is_a: ZFA:0001084 ! epaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001022 ! myotome somite 9 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000750 name: fast muscle cell somite 10 namespace: zebrafish_anatomy subset: cell_slim synonym: "fast muscle cells somite 10" EXACT PLURAL [] xref: TAO:0000750 is_a: ZFA:0009117 ! fast muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001013 ! myotome somite 10 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000751 name: epaxial region somite 8 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000751 is_a: ZFA:0001084 ! epaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000934 ! myotome somite 8 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000752 name: fast muscle cell somite 13 namespace: zebrafish_anatomy subset: cell_slim synonym: "fast muscle cells somite 13" EXACT PLURAL [] xref: TAO:0000752 is_a: ZFA:0009117 ! fast muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001014 ! myotome somite 13 relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000753 name: fast muscle cell somite 16 namespace: zebrafish_anatomy subset: cell_slim synonym: "fast muscle cells somite 16" EXACT PLURAL [] xref: TAO:0000753 is_a: ZFA:0009117 ! fast muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000927 ! myotome somite 16 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000754 name: fast muscle cell somite 19 namespace: zebrafish_anatomy subset: cell_slim synonym: "fast muscle cells somite 19" EXACT PLURAL [] xref: TAO:0000754 is_a: ZFA:0009117 ! fast muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000928 ! myotome somite 19 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000755 name: fast muscle cell somite 21 namespace: zebrafish_anatomy subset: cell_slim synonym: "fast muscle cells somite 21" EXACT PLURAL [] xref: TAO:0000755 is_a: ZFA:0009117 ! fast muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000929 ! myotome somite 21 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000756 name: fast muscle cell somite 24 namespace: zebrafish_anatomy subset: cell_slim synonym: "fast muscle cells somite 24" EXACT PLURAL [] xref: TAO:0000756 is_a: ZFA:0009117 ! fast muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000930 ! myotome somite 24 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000757 name: fast muscle cell somite 27 namespace: zebrafish_anatomy subset: cell_slim synonym: "fast muscle cells somite 27" EXACT PLURAL [] xref: TAO:0000757 is_a: ZFA:0009117 ! fast muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000931 ! myotome somite 27 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000758 name: fast muscle cell somite 3 namespace: zebrafish_anatomy subset: cell_slim synonym: "fast muscle cells somite 3" EXACT PLURAL [] xref: TAO:0000758 is_a: ZFA:0009117 ! fast muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000932 ! myotome somite 3 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000759 name: fast muscle cell somite 5 namespace: zebrafish_anatomy subset: cell_slim synonym: "fast muscle cells somite 5" EXACT PLURAL [] xref: TAO:0000759 is_a: ZFA:0009117 ! fast muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000933 ! myotome somite 5 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000760 name: fast muscle cell somite 8 namespace: zebrafish_anatomy subset: cell_slim synonym: "fast muscle cells somite 8" EXACT PLURAL [] xref: TAO:0000760 is_a: ZFA:0009117 ! fast muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000934 ! myotome somite 8 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000761 name: basal plate midbrain region namespace: zebrafish_anatomy def: "Portion of tissue that is dorsolateral to the floor plate and part of the midbrain." [ISBN:0444517383, ZFIN:ZDB-PUB-961014-576] synonym: "floor plate midbrain" RELATED [] synonym: "floorplate midbrain" RELATED [] xref: TAO:0000761 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0007039 ! midbrain neural tube relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000762 name: facio-acoustic neural crest namespace: zebrafish_anatomy def: "Cranial neural crest that gives rise to the facio-acoustic ganglion." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "facio acoustic neural crest" EXACT [] xref: TAO:0000762 is_a: ZFA:0001194 ! cranial neural crest relationship: end ZFS:0000028 ! Segmentation:26+ somites relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000763 name: floor plate rhombomere 2 namespace: zebrafish_anatomy def: "Floor plate that is part of the rhombomere 2." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "floor plate r2" EXACT [] synonym: "floorplate r2" EXACT [] xref: TAO:0000763 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0000822 ! rhombomere 2 relationship: part_of ZFA:0001258 ! floor plate rhombomere region relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000764 name: floor plate rhombomere 5 namespace: zebrafish_anatomy def: "Floor plate that is part of the rhombomere 5." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "floor plate r5" EXACT [] synonym: "floorplate r5" EXACT [] xref: TAO:0000764 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0000823 ! rhombomere 5 relationship: part_of ZFA:0001258 ! floor plate rhombomere region relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000765 name: floor plate rhombomere 8 namespace: zebrafish_anatomy def: "Floor plate that is part of the rhombomere 8." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "floor plate r8" EXACT [] synonym: "floorplate r8" EXACT [] xref: TAO:0000765 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0000153 ! rhombomere 8 relationship: part_of ZFA:0001258 ! floor plate rhombomere region relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000766 name: granular layer valvula cerebelli namespace: zebrafish_anatomy def: "Portion of tissue which is part of the valvula cerebelli and consists largely of axons and dendrites." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0000766 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000603 ! valvula cerebelli relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000767 name: hypaxial region somite 11 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000767 is_a: ZFA:0001085 ! hypaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000801 ! myotome somite 11 relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000768 name: hypaxial region somite 14 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000768 is_a: ZFA:0001085 ! hypaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000044 ! myotome somite 14 relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000769 name: hypaxial region somite 17 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000769 is_a: ZFA:0001085 ! hypaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001015 ! myotome somite 17 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000770 name: hypaxial region somite 2 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000770 is_a: ZFA:0001085 ! hypaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001016 ! myotome somite 2 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000771 name: hypaxial region somite 22 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000771 is_a: ZFA:0001085 ! hypaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001017 ! myotome somite 22 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000772 name: hypaxial region somite 25 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000772 is_a: ZFA:0001085 ! hypaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001018 ! myotome somite 25 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000773 name: fast muscle cell somite 12 namespace: zebrafish_anatomy subset: cell_slim synonym: "fast muscle cells somite 12" EXACT PLURAL [] xref: TAO:0000773 is_a: ZFA:0009117 ! fast muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000926 ! myotome somite 12 relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000774 name: hypaxial region somite 28 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] subset: cell_slim xref: TAO:0000774 is_a: ZFA:0001085 ! hypaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001019 ! myotome somite 28 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000775 name: hypaxial region somite 30 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] subset: cell_slim xref: TAO:0000775 is_a: ZFA:0001085 ! hypaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001020 ! myotome somite 30 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000776 name: hypaxial region somite 6 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000776 is_a: ZFA:0001085 ! hypaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001021 ! myotome somite 6 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000777 name: hypaxial region somite 9 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000777 is_a: ZFA:0001085 ! hypaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001022 ! myotome somite 9 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000778 name: spinal cord interneuron namespace: zebrafish_anatomy def: "A CNS interneuron located in the spinal cord." [GOC:mh, ORCiD:0000-0001-9114-8737] subset: cell_slim synonym: "interneurons spinal cord" EXACT PLURAL [] xref: CL:0005000 xref: TAO:0000778 is_a: ZFA:0009191 ! CNS interneuron relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000075 ! spinal cord relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000779 name: lateral forebrain bundle telencephalon namespace: zebrafish_anatomy def: "Portion of the lateral forebrain bundle that lies in the telencephalon." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "lateral forebrain bundles telencephalon" EXACT PLURAL [] xref: TAO:0000779 is_a: ZFA:0000597 ! telencephalic white matter relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0007012 ! lateral forebrain bundle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000780 name: lateral wall diencephalic region namespace: zebrafish_anatomy def: "Multi-tissue structure forming the sides of the lumen of the diencephalic region of the neural tube." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "lateral wall diencephalon" EXACT [] xref: TAO:0000780 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000101 ! diencephalon relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000781 name: lateral wall rhombomere 1 namespace: zebrafish_anatomy def: "Multi-tissue structure forming the sides of the lumen of the neural tube in rhombomere 1." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] xref: TAO:0000781 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0001031 ! rhombomere 1 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000782 name: lateral wall rhombomere 4 namespace: zebrafish_anatomy def: "Multi-tissue structure forming the sides of the lumen of the neural tube in rhombomere 4." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] xref: TAO:0000782 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0001032 ! rhombomere 4 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000783 name: lateral wall rhombomere 7 namespace: zebrafish_anatomy def: "Multi-tissue structure forming the sides of the lumen of the neural tube in rhombomere 7." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] xref: TAO:0000783 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000949 ! rhombomere 7 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000784 name: fast muscle cell somite 15 namespace: zebrafish_anatomy subset: cell_slim synonym: "fast muscle cells somite 15" EXACT PLURAL [] xref: TAO:0000784 is_a: ZFA:0009117 ! fast muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000802 ! myotome somite 15 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000785 name: lateral wall telencephalic region namespace: zebrafish_anatomy def: "Multi-tissue structure forming the sides of the lumen of the telencephalic region of the neural tube." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] synonym: "lateral wall telencephalon" EXACT [] xref: TAO:0000785 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000079 ! telencephalon relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000786 name: medial migration pathway mesenchyme namespace: zebrafish_anatomy xref: TAO:0000786 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000999 ! mesenchyme derived from trunk neural crest relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000787 name: mesenchyme derived from head neural crest namespace: zebrafish_anatomy xref: TAO:0000787 is_a: ZFA:0000113 ! head mesenchyme relationship: end ZFS:0000028 ! Segmentation:26+ somites relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0000788 name: mesenchyme dorsal fin namespace: zebrafish_anatomy def: "Mesenchyme part of dorsal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0000788 is_a: ZFA:0000393 ! mesenchyme relationship: end ZFS:0000035 ! Larval:Protruding-mouth relationship: part_of ZFA:0001173 ! dorsal fin relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0000789 name: mesoderm pectoral fin bud namespace: zebrafish_anatomy def: "Mesoderm that is part of the pectoral fin bud." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "mesoderm pectoral fin buds" EXACT PLURAL [] xref: TAO:0000789 is_a: ZFA:0000041 ! mesoderm relationship: end ZFS:0000030 ! Pharyngula:Prim-15 relationship: part_of ZFA:0000141 ! pectoral fin bud relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000790 name: muscle pioneer somite 10 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 10." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "muscle pioneers somite 10" EXACT PLURAL [] xref: TAO:0000790 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000974 ! somite 10 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000791 name: muscle pioneer somite 13 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 13." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "muscle pioneers somite 13" EXACT PLURAL [] xref: TAO:0000791 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000975 ! somite 13 relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000792 name: muscle pioneer somite 16 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 16." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "muscle pioneers somite 16" EXACT PLURAL [] xref: TAO:0000792 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000976 ! somite 16 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000793 name: muscle pioneer somite 19 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 19." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "muscle pioneers somite 19" EXACT PLURAL [] xref: TAO:0000793 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000977 ! somite 19 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000794 name: muscle pioneer somite 22 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 22." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "muscle pioneers somite 22" EXACT PLURAL [] xref: TAO:0000794 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000978 ! somite 22 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000795 name: fast muscle cell somite 18 namespace: zebrafish_anatomy subset: cell_slim synonym: "fast muscle cells somite 18" EXACT PLURAL [] xref: TAO:0000795 is_a: ZFA:0009117 ! fast muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000803 ! myotome somite 18 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000796 name: muscle pioneer somite 25 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 25." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "muscle pioneers somite 25" EXACT PLURAL [] xref: TAO:0000796 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000980 ! somite 25 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000797 name: muscle pioneer somite 28 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 28." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "muscle pioneers somite 28" EXACT PLURAL [] xref: TAO:0000797 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000856 ! somite 28 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000798 name: muscle pioneer somite 30 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 30." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "muscle pioneers somite 30" EXACT PLURAL [] xref: TAO:0000798 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000157 ! somite 30 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000799 name: muscle pioneer somite 6 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 6." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "muscle pioneers somite 6" EXACT PLURAL [] xref: TAO:0000799 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000982 ! somite 6 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000800 name: muscle pioneer somite 9 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 9." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "muscle pioneers somite 9" EXACT PLURAL [] xref: TAO:0000800 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000983 ! somite 9 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000801 name: myotome somite 11 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] subset: cell_slim xref: TAO:0000801 is_a: ZFA:0001056 ! myotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000725 ! somite 11 relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000802 name: myotome somite 15 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] subset: cell_slim xref: TAO:0000802 is_a: ZFA:0001056 ! myotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000852 ! somite 15 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000803 name: myotome somite 18 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] subset: cell_slim xref: TAO:0000803 is_a: ZFA:0001056 ! myotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000853 ! somite 18 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000804 name: myotome somite 20 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] subset: cell_slim xref: TAO:0000804 is_a: ZFA:0001056 ! myotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000156 ! somite 20 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000805 name: myotome somite 23 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] subset: cell_slim xref: TAO:0000805 is_a: ZFA:0001056 ! myotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000730 ! somite 23 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000806 name: fast muscle cell somite 20 namespace: zebrafish_anatomy subset: cell_slim synonym: "fast muscle cells somite 20" EXACT PLURAL [] xref: TAO:0000806 is_a: ZFA:0009117 ! fast muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000804 ! myotome somite 20 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000807 name: myotome somite 26 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] subset: cell_slim xref: TAO:0000807 is_a: ZFA:0001056 ! myotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000074 ! somite 26 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000808 name: myotome somite 29 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] subset: cell_slim xref: TAO:0000808 is_a: ZFA:0001056 ! myotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000981 ! somite 29 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000809 name: myotome somite 4 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] subset: cell_slim xref: TAO:0000809 is_a: ZFA:0001056 ! myotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000857 ! somite 4 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000810 name: myotome somite 7 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] subset: cell_slim xref: TAO:0000810 is_a: ZFA:0001056 ! myotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000733 ! somite 7 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000811 name: neural crest diencephalon namespace: zebrafish_anatomy def: "Cranial neural crest that is part of the diencephalon." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "diencephalic neural crest" EXACT [] xref: TAO:0000811 is_a: ZFA:0001194 ! cranial neural crest relationship: end ZFS:0000028 ! Segmentation:26+ somites relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000812 name: neural crest telencephalon namespace: zebrafish_anatomy def: "Cranial neural crest that is part of the telencephalon." [GOC:ymb, ORCiD:0000-0002-9900-7880] xref: TAO:0000812 is_a: ZFA:0001194 ! cranial neural crest relationship: end ZFS:0000028 ! Segmentation:26+ somites relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000813 name: infraorbital lateral line neuromast namespace: zebrafish_anatomy def: "Neuromast that is part of the infraorbital lateral line. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576] synonym: "neuromast infraorbital" EXACT [] synonym: "neuromasts infraorbital" EXACT PLURAL [] xref: TAO:0000813 is_a: ZFA:0000243 ! neuromast relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000524 ! infraorbital lateral line relationship: start ZFS:0000036 ! Larval:Day 4 [Term] id: ZFA:0000814 name: opercular lateral line neuromast namespace: zebrafish_anatomy def: "Neuromast that is part of the opercular lateral line. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576] synonym: "neuromast opercular" EXACT [] synonym: "neuromasts opercular" EXACT PLURAL [] xref: TAO:0000814 is_a: ZFA:0000243 ! neuromast relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000424 ! opercular lateral line relationship: start ZFS:0000035 ! Larval:Protruding-mouth [Term] id: ZFA:0000815 name: nucleus of the medial longitudinal fasciculus medulla oblongata namespace: zebrafish_anatomy xref: TAO:0000815 is_a: ZFA:0001658 ! hindbrain nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000816 name: oral epithelium namespace: zebrafish_anatomy def: "The epithelium that lines the oral cavity. The oral epithelium epithelial cells with many short microvilli as well as mucous cells, rodlet cells and taste buds." [ZFIN:ZDB-PUB-060921-12, ZFIN:ZDB-PUB-091204-24] xref: TAO:0000816 is_a: ZFA:0001486 ! epithelium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000590 ! oral region relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0000817 name: fast muscle cell somite 23 namespace: zebrafish_anatomy subset: cell_slim synonym: "fast muscle cells somite 23" EXACT PLURAL [] xref: TAO:0000817 is_a: ZFA:0009117 ! fast muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000805 ! myotome somite 23 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000818 name: vagal neural crest namespace: zebrafish_anatomy def: "Vagal neural crest is adjacent to the first seven somites gives rise to both ganglionic and ectomesenchymal derivatives." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "post-otic neural crest" EXACT [] xref: TAO:0000818 is_a: ZFA:0000045 ! neural crest relationship: end ZFS:0000031 ! Pharyngula:Prim-25 relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000819 name: postcommissural nucleus of ventral telencephalon namespace: zebrafish_anatomy def: "Periventricular nucleus which is contiguous with the supracommissural nucleus of the ventral telencephalon. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "area ventralis telencephali, nucleus postcommissuralis" EXACT [] synonym: "postcommissural nucleus of V" EXACT [] xref: TAO:0000819 is_a: ZFA:0001666 ! periventricular nucleus of ventral telencephalon relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000820 name: presumptive neuron neural tube namespace: zebrafish_anatomy comment: This term was obsoleted because we could not determine if it was a presumptive neuron part of the neural tube or a neuron part of the presumptive neural tube. synonym: "presumptive neurons neural tube" EXACT PLURAL [] xref: TAO:0000820 is_obsolete: true [Term] id: ZFA:0000821 name: primary neuron hindbrain namespace: zebrafish_anatomy subset: cell_slim synonym: "primary neurons hindbrain" EXACT PLURAL [] xref: TAO:0000821 is_a: ZFA:0009242 ! primary neuron relationship: end ZFS:0000028 ! Segmentation:26+ somites relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000822 name: rhombomere 2 namespace: zebrafish_anatomy def: "Hindbrain segment or neuromere." [ZFIN:ZDB-PUB-961014-576] synonym: "r2" EXACT [] xref: TAO:0000822 is_a: ZFA:0001064 ! rhombomere relationship: develops_from ZFA:0001208 ! presumptive rhombomere 2 relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000823 name: rhombomere 5 namespace: zebrafish_anatomy def: "Hindbrain segment or neuromere." [ZFIN:ZDB-PUB-961014-576] synonym: "r5" EXACT [] xref: TAO:0000823 is_a: ZFA:0001064 ! rhombomere relationship: develops_from ZFA:0001211 ! presumptive rhombomere 5 relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000824 name: roof plate rhombomere 2 namespace: zebrafish_anatomy def: "Roof plate that is part of rhombomere 2." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] xref: TAO:0000824 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0000822 ! rhombomere 2 relationship: part_of ZFA:0001311 ! roof plate rhombomere region relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000825 name: roof plate rhombomere 6 namespace: zebrafish_anatomy def: "Roof plate that is part of rhombomere 6." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] xref: TAO:0000825 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0000069 ! rhombomere 6 relationship: part_of ZFA:0001311 ! roof plate rhombomere region relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000826 name: central nucleus torus semicircularis namespace: zebrafish_anatomy def: "Midbrain nucleus which is part of the torus semicircularis and is the target of ascending octavolateralis systems related to audition. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "central nucleus of semicircular torus" EXACT [] synonym: "nucleus centralis tori semicircularis" EXACT [] xref: TAO:0000826 is_a: ZFA:0001665 ! midbrain nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000599 ! torus semicircularis relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000827 name: fast muscle cell somite 26 namespace: zebrafish_anatomy subset: cell_slim synonym: "fast muscle cells somite 26" EXACT PLURAL [] xref: TAO:0000827 is_a: ZFA:0009117 ! fast muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000807 ! myotome somite 26 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000828 name: roof plate rhombomere 5 namespace: zebrafish_anatomy def: "Roof plate that is part of rhombomere 5." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] xref: TAO:0000828 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0000823 ! rhombomere 5 relationship: part_of ZFA:0001311 ! roof plate rhombomere region relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000829 name: sclerotome somite 11 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000829 is_a: ZFA:0001080 ! sclerotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000725 ! somite 11 relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000830 name: sclerotome somite 14 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000830 is_a: ZFA:0001080 ! sclerotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000726 ! somite 14 relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000831 name: sclerotome somite 17 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000831 is_a: ZFA:0001080 ! sclerotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000727 ! somite 17 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000832 name: sclerotome somite 2 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000832 is_a: ZFA:0001080 ! sclerotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000728 ! somite 2 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000833 name: sclerotome somite 22 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000833 is_a: ZFA:0001080 ! sclerotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000978 ! somite 22 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000834 name: sclerotome somite 25 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000834 is_a: ZFA:0001080 ! sclerotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000980 ! somite 25 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000835 name: sclerotome somite 28 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000835 is_a: ZFA:0001080 ! sclerotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000856 ! somite 28 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000836 name: sclerotome somite 30 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000836 is_a: ZFA:0001080 ! sclerotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000157 ! somite 30 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000837 name: sclerotome somite 6 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000837 is_a: ZFA:0001080 ! sclerotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000982 ! somite 6 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000838 name: fast muscle cell somite 29 namespace: zebrafish_anatomy subset: cell_slim synonym: "fast muscle cells somite 29" EXACT PLURAL [] xref: TAO:0000838 is_a: ZFA:0009117 ! fast muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000808 ! myotome somite 29 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000839 name: sclerotome somite 9 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000839 is_a: ZFA:0001080 ! sclerotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000983 ! somite 9 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000840 name: slow muscle cell somite 11 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 11." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "slow muscle cells somite 11" EXACT PLURAL [] xref: TAO:0000840 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000801 ! myotome somite 11 relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000841 name: slow muscle cell somite 14 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 14." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "slow muscle cells somite 14" EXACT PLURAL [] xref: TAO:0000841 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000044 ! myotome somite 14 relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000842 name: slow muscle cell somite 17 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 17." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "slow muscle cells somite 17" EXACT PLURAL [] xref: TAO:0000842 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001015 ! myotome somite 17 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000843 name: slow muscle cell somite 2 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 2." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "slow muscle cells somite 2" EXACT PLURAL [] xref: TAO:0000843 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001016 ! myotome somite 2 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000844 name: slow muscle cell somite 22 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 22." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "slow muscle cells somite 22" EXACT PLURAL [] xref: TAO:0000844 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001017 ! myotome somite 22 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000845 name: slow muscle cell somite 25 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 25." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "slow muscle cells somite 25" EXACT PLURAL [] xref: TAO:0000845 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001018 ! myotome somite 25 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000846 name: slow muscle cell somite 28 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 28." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "slow muscle cells somite 28" EXACT PLURAL [] xref: TAO:0000846 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001019 ! myotome somite 28 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000847 name: slow muscle cell somite 30 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 30." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "slow muscle cells somite 30" EXACT PLURAL [] xref: TAO:0000847 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001020 ! myotome somite 30 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000848 name: slow muscle cell somite 6 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 6." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "slow muscle cells somite 6" EXACT PLURAL [] xref: TAO:0000848 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001021 ! myotome somite 6 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000849 name: fast muscle cell somite 4 namespace: zebrafish_anatomy subset: cell_slim synonym: "fast muscle cells somite 4" EXACT PLURAL [] xref: TAO:0000849 is_a: ZFA:0009117 ! fast muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000809 ! myotome somite 4 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000850 name: slow muscle cell somite 9 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 9." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "slow muscle cells somite 9" EXACT PLURAL [] xref: TAO:0000850 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001022 ! myotome somite 9 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000851 name: somite 12 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576] xref: TAO:0000851 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000852 name: somite 15 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576] xref: TAO:0000852 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000853 name: somite 18 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576] xref: TAO:0000853 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000854 name: somite 21 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576] xref: TAO:0000854 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000855 name: somite 24 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576] xref: TAO:0000855 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000856 name: somite 28 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576] xref: TAO:0000856 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000857 name: somite 4 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576] xref: TAO:0000857 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0000858 name: somite 8 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576] xref: TAO:0000858 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000859 name: specialized hemal arch and spine namespace: zebrafish_anatomy def: "Modified hemal arches and spines that support the caudal fin. In developing fish they articulate with preural 1, ural1 and ural2; in adults they articulate with the urostyle." [ZFIN:ZDB-PUB-011008-1] synonym: "ha(pu)" EXACT [] synonym: "hemal arch (preural)" EXACT [ZFIN:ZDB-PUB-011008-1] synonym: "specialized haemal arch and spine" EXACT [] synonym: "specialized hemal arches and spines" EXACT PLURAL [] xref: TAO:0000859 is_a: ZFA:0001591 ! endochondral bone relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000862 ! caudal fin skeleton relationship: start ZFS:0000036 ! Larval:Day 4 [Term] id: ZFA:0000860 name: fast muscle cell somite 7 namespace: zebrafish_anatomy subset: cell_slim synonym: "fast muscle cells somite 7" EXACT PLURAL [] xref: TAO:0000860 is_a: ZFA:0009117 ! fast muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000810 ! myotome somite 7 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000861 name: ventral oblique extraocular muscle namespace: zebrafish_anatomy def: "Extraocular muscle that inserts at the scleral-corneal junction on the ventral side of the eye. The insertion point of the ventral oblique and the ventral rectus overlap in adult fish. All the oblique extraocular muscles originate together from the anterior ethmoid plate. The ventral oblique is innervated by the oculomotor nerve." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-111205-9] comment: Mature form at Hatching:Pec-fin. synonym: "inferior oblique muscle" EXACT [ZFIN:ZDB-PUB-110512-18] synonym: "ventral oblique extraocular muscles" EXACT PLURAL [] xref: TAO:0000861 is_a: ZFA:0005145 ! muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000511 ! extraocular musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000862 name: caudal fin skeleton namespace: zebrafish_anatomy def: "Median fin skeleton supporting the caudal fin." [TAO:curator] xref: TAO:0000862 is_a: ZFA:0001123 ! axial fin skeleton relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001058 ! caudal fin relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000863 name: dermatocranium namespace: zebrafish_anatomy def: "Anatomical cluster that is part of the cranium and composed of dermally derived bones." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "dermal bone cranium" EXACT [] xref: TAO:0000863 is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000737 ! cranium relationship: start ZFS:0000032 ! Pharyngula:High-pec [Term] id: ZFA:0000864 name: epaxial region somite 1 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000864 is_a: ZFA:0001084 ! epaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000924 ! myotome somite 1 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000865 name: epaxial region somite 12 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000865 is_a: ZFA:0001084 ! epaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000926 ! myotome somite 12 relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000866 name: epaxial region somite 15 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000866 is_a: ZFA:0001084 ! epaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000802 ! myotome somite 15 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000867 name: epaxial region somite 18 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000867 is_a: ZFA:0001084 ! epaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000803 ! myotome somite 18 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000868 name: epaxial region somite 20 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000868 is_a: ZFA:0001084 ! epaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000804 ! myotome somite 20 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000869 name: epaxial region somite 23 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000869 is_a: ZFA:0001084 ! epaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000805 ! myotome somite 23 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000870 name: epaxial region somite 26 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000870 is_a: ZFA:0001084 ! epaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000807 ! myotome somite 26 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000871 name: floor plate diencephalic region namespace: zebrafish_anatomy def: "Floor plate that is part of the diencephalon." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "floorplate diencephalon" EXACT [] xref: TAO:0000871 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0000022 ! floor plate relationship: part_of ZFA:0000101 ! diencephalon relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000872 name: epaxial region somite 29 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000872 is_a: ZFA:0001084 ! epaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000808 ! myotome somite 29 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000873 name: epaxial region somite 4 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000873 is_a: ZFA:0001084 ! epaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000809 ! myotome somite 4 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000874 name: epaxial region somite 7 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000874 is_a: ZFA:0001084 ! epaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000810 ! myotome somite 7 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000875 name: facial neural crest namespace: zebrafish_anatomy def: "Cranial neural crest that is part of the facial region." [GOC:ymb, ORCiD:0000-0002-9900-7880] xref: TAO:0000875 is_obsolete: true consider: ZFA:0001194 [Term] id: ZFA:0000876 name: fast muscle cell somite 11 namespace: zebrafish_anatomy subset: cell_slim synonym: "fast muscle cells somite 11" EXACT PLURAL [] xref: TAO:0000876 is_a: ZFA:0009117 ! fast muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000801 ! myotome somite 11 relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000877 name: fast muscle cell somite 14 namespace: zebrafish_anatomy subset: cell_slim synonym: "fast muscle cells somite 14" EXACT PLURAL [] xref: TAO:0000877 is_a: ZFA:0009117 ! fast muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000044 ! myotome somite 14 relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000878 name: fast muscle cell somite 17 namespace: zebrafish_anatomy subset: cell_slim synonym: "fast muscle cells somite 17" EXACT PLURAL [] xref: TAO:0000878 is_a: ZFA:0009117 ! fast muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001015 ! myotome somite 17 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000879 name: fast muscle cell somite 2 namespace: zebrafish_anatomy subset: cell_slim synonym: "fast muscle cells somite 2" EXACT PLURAL [] xref: TAO:0000879 is_a: ZFA:0009117 ! fast muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001016 ! myotome somite 2 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000880 name: fast muscle cell somite 22 namespace: zebrafish_anatomy subset: cell_slim synonym: "fast muscle cells somite 22" EXACT PLURAL [] xref: TAO:0000880 is_a: ZFA:0009117 ! fast muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001017 ! myotome somite 22 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000881 name: fast muscle cell somite 25 namespace: zebrafish_anatomy subset: cell_slim synonym: "fast muscle cells somite 25" EXACT PLURAL [] xref: TAO:0000881 is_a: ZFA:0009117 ! fast muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001018 ! myotome somite 25 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000882 name: floor plate rhombomere 1 namespace: zebrafish_anatomy def: "Floor plate that is part of the rhombomere 1." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "floor plate r1" EXACT [] xref: TAO:0000882 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0001031 ! rhombomere 1 relationship: part_of ZFA:0001258 ! floor plate rhombomere region relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000883 name: fast muscle cell somite 28 namespace: zebrafish_anatomy subset: cell_slim synonym: "fast muscle cells somite 28" EXACT PLURAL [] xref: TAO:0000883 is_a: ZFA:0009117 ! fast muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001019 ! myotome somite 28 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000884 name: fast muscle cell somite 30 namespace: zebrafish_anatomy subset: cell_slim synonym: "fast muscle cells somite 30" EXACT PLURAL [] xref: TAO:0000884 is_a: ZFA:0009117 ! fast muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001020 ! myotome somite 30 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000885 name: fast muscle cell somite 6 namespace: zebrafish_anatomy subset: cell_slim synonym: "fast muscle cells somite 6" EXACT PLURAL [] xref: TAO:0000885 is_a: ZFA:0009117 ! fast muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001021 ! myotome somite 6 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000886 name: fast muscle cell somite 9 namespace: zebrafish_anatomy subset: cell_slim synonym: "fast muscle cells somite 9" EXACT PLURAL [] xref: TAO:0000886 is_a: ZFA:0009117 ! fast muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001022 ! myotome somite 9 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000887 name: floor plate neural rod namespace: zebrafish_anatomy def: "Floor plate that is part of the neural rod." [GOC:mh, GOC:ymb, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-9900-7880] synonym: "floorplate neural rod" EXACT [] xref: TAO:0000887 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000026 ! Segmentation:14-19 somites relationship: part_of ZFA:0000022 ! floor plate relationship: part_of ZFA:0000133 ! neural rod relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000888 name: floor plate rhombomere 3 namespace: zebrafish_anatomy def: "Floor plate that is part of the rhombomere 3." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "floor plate r3" EXACT [] synonym: "floorplate r3" EXACT [] xref: TAO:0000888 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0000948 ! rhombomere 3 relationship: part_of ZFA:0001258 ! floor plate rhombomere region relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000889 name: floor plate rhombomere 6 namespace: zebrafish_anatomy def: "Floor plate that is part of the rhombomere 6." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "floor plate r6" EXACT [] synonym: "floorplate r6" EXACT [] xref: TAO:0000889 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0000069 ! rhombomere 6 relationship: part_of ZFA:0001258 ! floor plate rhombomere region relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000890 name: floor plate spinal cord region namespace: zebrafish_anatomy def: "Floor plate that is part of the spinal cord." [GOC:mh, GOC:ymb, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-9900-7880] synonym: "floorplate spinal cord" EXACT [] xref: TAO:0000890 is_a: ZFA:0001488 ! multi-tissue structure relationship: develops_from ZFA:0001434 ! floor plate neural tube relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0000022 ! floor plate relationship: part_of ZFA:0000075 ! spinal cord relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000891 name: hypaxial region somite 1 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000891 is_a: ZFA:0001085 ! hypaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000924 ! myotome somite 1 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000892 name: hypaxial region somite 12 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000892 is_a: ZFA:0001085 ! hypaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000926 ! myotome somite 12 relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000893 name: floor plate rhombomere 4 namespace: zebrafish_anatomy def: "Floor plate that is part of the rhombomere 4." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "floor plate r4" EXACT [] synonym: "floorplate r4" EXACT [] xref: TAO:0000893 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0001032 ! rhombomere 4 relationship: part_of ZFA:0001258 ! floor plate rhombomere region relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000894 name: hypaxial region somite 15 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000894 is_a: ZFA:0001085 ! hypaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000802 ! myotome somite 15 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000895 name: hypaxial region somite 18 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000895 is_a: ZFA:0001085 ! hypaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000803 ! myotome somite 18 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000896 name: hypaxial region somite 20 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000896 is_a: ZFA:0001085 ! hypaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000804 ! myotome somite 20 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000897 name: hypaxial region somite 23 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000897 is_a: ZFA:0001085 ! hypaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000805 ! myotome somite 23 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000898 name: hypaxial region somite 26 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000898 is_a: ZFA:0001085 ! hypaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000807 ! myotome somite 26 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000899 name: hypaxial region somite 29 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000899 is_a: ZFA:0001085 ! hypaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000808 ! myotome somite 29 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000900 name: hypaxial region somite 4 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000900 is_a: ZFA:0001085 ! hypaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000809 ! myotome somite 4 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000901 name: hypaxial region somite 7 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000901 is_a: ZFA:0001085 ! hypaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000810 ! myotome somite 7 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000902 name: hypural muscle namespace: zebrafish_anatomy def: "Musculature associated with the hypurals." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "hypural muscles" EXACT PLURAL [] xref: TAO:0000902 is_a: ZFA:0005145 ! muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000628 ! caudal fin musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000903 name: interpeduncular nucleus tegmentum namespace: zebrafish_anatomy comment: ZDB-PUB-010601-11 says there are 4 sub-nuclei. xref: TAO:0000903 is_a: ZFA:0005577 ! tegmental nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000160 ! tegmentum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000904 name: floor plate rhombomere 7 namespace: zebrafish_anatomy def: "Floor plate that is part of the rhombomere 7." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "floor plate r7" EXACT [] synonym: "floorplate r7" EXACT [] xref: TAO:0000904 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0000949 ! rhombomere 7 relationship: part_of ZFA:0001258 ! floor plate rhombomere region relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000905 name: lateral mesenchyme derived from mesoderm namespace: zebrafish_anatomy xref: TAO:0000905 is_a: ZFA:0000081 ! trunk mesenchyme relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000906 name: lateral wall midbrain region namespace: zebrafish_anatomy def: "Multi-tissue structure forming the sides of the lumen of the midbrain region of the neural tube." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] synonym: "lateral wall midbrain" EXACT [] xref: TAO:0000906 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000128 ! midbrain relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000907 name: lateral wall rhombomere 2 namespace: zebrafish_anatomy def: "Multi-tissue structure forming the sides of the lumen of the neural tube in rhombomere 2." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] xref: TAO:0000907 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000822 ! rhombomere 2 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000908 name: lateral wall rhombomere 5 namespace: zebrafish_anatomy def: "Multi-tissue structure forming the sides of the lumen of the neural tube in rhombomere 5." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] xref: TAO:0000908 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000823 ! rhombomere 5 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000909 name: lateral wall rhombomere 8 namespace: zebrafish_anatomy def: "Multi-tissue structure forming the sides of the lumen of the neural tube in rhombomere 8." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] xref: TAO:0000909 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000153 ! rhombomere 8 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000910 name: medial forebrain bundle telencephalon namespace: zebrafish_anatomy synonym: "medial forebrain bundles telencephalon" EXACT PLURAL [] xref: TAO:0000910 is_a: ZFA:0000597 ! telencephalic white matter relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005111 ! medial forebrain bundle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000911 name: medial pterygiophores dorsal fin namespace: zebrafish_anatomy is_obsolete: true replaced_by: ZFA:0001647 [Term] id: ZFA:0000912 name: mesenchyme median fin fold namespace: zebrafish_anatomy def: "Mesenchyme part of median fin fold." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0000912 is_a: ZFA:0000393 ! mesenchyme relationship: end ZFS:0000037 ! Larval:Day 5 relationship: part_of ZFA:0000040 ! median fin fold relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0000913 name: molecular layer valvula cerebelli namespace: zebrafish_anatomy def: "Portion of tissue which is part of the valvula cerebelli and contains neuronal cell bodies." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0000913 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000603 ! valvula cerebelli relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000914 name: floor plate telencephalic region namespace: zebrafish_anatomy def: "Floor plate that is part of the telencephalon." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "floorplate telencephalon" EXACT [] xref: TAO:0000914 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0000022 ! floor plate relationship: part_of ZFA:0000079 ! telencephalon relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000915 name: muscle pioneer somite 11 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 11." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "muscle pioneers somite 11" EXACT PLURAL [] xref: TAO:0000915 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000725 ! somite 11 relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000916 name: muscle pioneer somite 14 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 14." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "muscle pioneers somite 14" EXACT PLURAL [] xref: TAO:0000916 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000726 ! somite 14 relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000917 name: muscle pioneer somite 17 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 17." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "muscle pioneers somite 17" EXACT PLURAL [] xref: TAO:0000917 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000727 ! somite 17 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000918 name: muscle pioneer somite 20 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 20." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "muscle pioneers somite 20" EXACT PLURAL [] xref: TAO:0000918 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000156 ! somite 20 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000919 name: muscle pioneer somite 23 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 23." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "muscle pioneers somite 23" EXACT PLURAL [] xref: TAO:0000919 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000730 ! somite 23 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000920 name: muscle pioneer somite 26 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 26." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "muscle pioneers somite 26" EXACT PLURAL [] xref: TAO:0000920 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000074 ! somite 26 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000921 name: muscle pioneer somite 29 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 29." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "muscle pioneers somite 29" EXACT PLURAL [] xref: TAO:0000921 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000981 ! somite 29 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000922 name: muscle pioneer somite 4 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 4." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "muscle pioneers somite 4" EXACT PLURAL [] xref: TAO:0000922 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000857 ! somite 4 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000923 name: muscle pioneer somite 7 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 7." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "muscle pioneers somite 7" EXACT PLURAL [] xref: TAO:0000923 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000733 ! somite 7 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000924 name: myotome somite 1 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000924 is_a: ZFA:0001056 ! myotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000072 ! somite 1 relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0000925 name: hypaxial region somite 10 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000925 is_a: ZFA:0001085 ! hypaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001013 ! myotome somite 10 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000926 name: myotome somite 12 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000926 is_a: ZFA:0001056 ! myotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000851 ! somite 12 relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000927 name: myotome somite 16 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000927 is_a: ZFA:0001056 ! myotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000976 ! somite 16 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000928 name: myotome somite 19 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000928 is_a: ZFA:0001056 ! myotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000977 ! somite 19 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000929 name: myotome somite 21 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000929 is_a: ZFA:0001056 ! myotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000854 ! somite 21 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000930 name: myotome somite 24 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000930 is_a: ZFA:0001056 ! myotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000855 ! somite 24 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000931 name: myotome somite 27 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000931 is_a: ZFA:0001056 ! myotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000731 ! somite 27 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000932 name: myotome somite 3 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000932 is_a: ZFA:0001056 ! myotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000732 ! somite 3 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000933 name: myotome somite 5 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000933 is_a: ZFA:0001056 ! myotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000073 ! somite 5 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000934 name: myotome somite 8 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000934 is_a: ZFA:0001056 ! myotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000858 ! somite 8 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000935 name: neural crest midbrain namespace: zebrafish_anatomy def: "Neural crest that is part of the midbrain." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "mesencephalic neural crest" EXACT [GOC:ymb, ORCiD:0000-0002-9900-7880] xref: TAO:0000935 is_a: ZFA:0001194 ! cranial neural crest relationship: end ZFS:0000027 ! Segmentation:20-25 somites relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000936 name: dorsal fin distal radial namespace: zebrafish_anatomy def: "Rod-like internal median skeletal support bones of the dorsal fin, which articulate with the lepidotrichia distally." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "dorsal fin distal radials" EXACT PLURAL [] xref: TAO:0000936 is_a: ZFA:0001647 ! dorsal fin radial relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001419 ! dorsal fin pterygiophore relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0000937 name: hypaxial region somite 13 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000937 is_a: ZFA:0001085 ! hypaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001014 ! myotome somite 13 relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000938 name: central canal namespace: zebrafish_anatomy def: "Spinal cord structure that is part of the ventricular system and is filled with cerebral-spinal fluid and runs the length of the spinal cord." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "canalis centralis" EXACT [] synonym: "neural lumen" EXACT [] xref: TAO:0000938 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000075 ! spinal cord relationship: part_of ZFA:0001261 ! ventricular system relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000939 name: middle lateral line neuromast namespace: zebrafish_anatomy def: "Neuromast that is part of the middle lateral line. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576] synonym: "neuromast middle" EXACT [] synonym: "neuromasts middle" EXACT PLURAL [] xref: TAO:0000939 is_a: ZFA:0000243 ! neuromast relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000344 ! middle lateral line relationship: start ZFS:0000036 ! Larval:Day 4 [Term] id: ZFA:0000940 name: posterior lateral line neuromast namespace: zebrafish_anatomy def: "Neuromast that is part of the posterior lateral line. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576] synonym: "neuromast posterior" EXACT [] synonym: "neuromasts posterior" EXACT PLURAL [] xref: TAO:0000940 is_a: ZFA:0000243 ! neuromast relationship: develops_from ZFA:0001157 ! posterior lateral line primordium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000944 ! posterior lateral line relationship: start ZFS:0000032 ! Pharyngula:High-pec [Term] id: ZFA:0000941 name: nucleus of the medial longitudinal fasciculus synencephalon namespace: zebrafish_anatomy def: "Diencephalic nucleus that is part of the synencephalon, is located adjacent to the caudal commissure, and extends axons into the medial longitudinal fasciculus. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] xref: TAO:0000941 is_a: ZFA:0001659 ! diencephalic nucleus relationship: develops_from ZFA:0005871 ! region of the nucleus of the medial longitudinal fascicle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000293 ! synencephalon relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000943 name: pectoral fin skeleton namespace: zebrafish_anatomy def: "Skeleton that consists of the supporting endochondral proximal and distal radials and the dermal fins rays or lepidotrichia. The pectoral fin skeleton is located in the thoracic region of the body and articulates with the scapula and coracoid." [TAO:curator] xref: TAO:0000943 is_a: ZFA:0000027 ! paired fin skeleton relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001161 ! pectoral fin relationship: start ZFS:0000032 ! Pharyngula:High-pec [Term] id: ZFA:0000944 name: posterior lateral line namespace: zebrafish_anatomy def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "pll" EXACT [] xref: TAO:0000944 is_a: ZFA:0001469 ! lateral line relationship: develops_from ZFA:0001157 ! posterior lateral line primordium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001471 ! posterior lateral line system relationship: start ZFS:0000032 ! Pharyngula:High-pec [Term] id: ZFA:0000946 name: hypaxial region somite 16 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000946 is_a: ZFA:0001085 ! hypaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000927 ! myotome somite 16 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000947 name: dorsal fin proximal radial namespace: zebrafish_anatomy def: "Rod-like internal median skeletal support bones of the dorsal fin, which articulate with the distal radials." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "dorsal fin proximal radials" EXACT PLURAL [] xref: TAO:0000947 is_a: ZFA:0001647 ! dorsal fin radial relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001419 ! dorsal fin pterygiophore relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0000948 name: rhombomere 3 namespace: zebrafish_anatomy def: "Hindbrain segment or neuromere." [ZFIN:ZDB-PUB-961014-576] synonym: "r3" EXACT [] xref: TAO:0000948 is_a: ZFA:0001064 ! rhombomere relationship: develops_from ZFA:0001213 ! presumptive rhombomere 3 relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000949 name: rhombomere 7 namespace: zebrafish_anatomy def: "Hindbrain segment or neuromere." [ZFIN:ZDB-PUB-961014-576] synonym: "r7" EXACT [] xref: TAO:0000949 is_a: ZFA:0001064 ! rhombomere relationship: develops_from ZFA:0001209 ! presumptive rhombomere 7 relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000950 name: roof plate rhombomere 3 namespace: zebrafish_anatomy def: "Roof plate that is part of rhombomere 3." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] xref: TAO:0000950 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0000948 ! rhombomere 3 relationship: part_of ZFA:0001311 ! roof plate rhombomere region relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000951 name: roof plate rhombomere 7 namespace: zebrafish_anatomy def: "Roof plate that is part of rhombomere 7." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] xref: TAO:0000951 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0000949 ! rhombomere 7 relationship: part_of ZFA:0001311 ! roof plate rhombomere region relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000952 name: sclerotome somite 1 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000952 is_a: ZFA:0001080 ! sclerotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000072 ! somite 1 relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0000953 name: sclerotome somite 12 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000953 is_a: ZFA:0001080 ! sclerotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000851 ! somite 12 relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000954 name: sclerotome somite 15 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000954 is_a: ZFA:0001080 ! sclerotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000852 ! somite 15 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000955 name: sclerotome somite 18 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000955 is_a: ZFA:0001080 ! sclerotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000853 ! somite 18 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000956 name: sclerotome somite 20 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000956 is_a: ZFA:0001080 ! sclerotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000156 ! somite 20 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000957 name: hypaxial region somite 19 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000957 is_a: ZFA:0001085 ! hypaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000928 ! myotome somite 19 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000958 name: sclerotome somite 23 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000958 is_a: ZFA:0001080 ! sclerotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000730 ! somite 23 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000959 name: sclerotome somite 26 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000959 is_a: ZFA:0001080 ! sclerotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000074 ! somite 26 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000960 name: sclerotome somite 29 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000960 is_a: ZFA:0001080 ! sclerotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000981 ! somite 29 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000961 name: sclerotome somite 4 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000961 is_a: ZFA:0001080 ! sclerotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000857 ! somite 4 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000962 name: sclerotome somite 7 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000962 is_a: ZFA:0001080 ! sclerotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000733 ! somite 7 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000963 name: slow muscle cell somite 1 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 1." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961219-12] subset: cell_slim synonym: "slow muscle cells somite 1" EXACT PLURAL [] xref: TAO:0000963 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000924 ! myotome somite 1 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000964 name: slow muscle cell somite 12 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 12." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "slow muscle cells somite 12" EXACT PLURAL [] xref: TAO:0000964 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000926 ! myotome somite 12 relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000965 name: slow muscle cell somite 15 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 15." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "slow muscle cells somite 15" EXACT PLURAL [] xref: TAO:0000965 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000802 ! myotome somite 15 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000966 name: slow muscle cell somite 18 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 18." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "slow muscle cells somite 18" EXACT PLURAL [] xref: TAO:0000966 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000803 ! myotome somite 18 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000967 name: slow muscle cell somite 20 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 20." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "slow muscle cells somite 20" EXACT PLURAL [] xref: TAO:0000967 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000804 ! myotome somite 20 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000968 name: hypaxial region somite 21 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000968 is_a: ZFA:0001085 ! hypaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000929 ! myotome somite 21 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000969 name: slow muscle cell somite 23 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 23." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "slow muscle cells somite 23" EXACT PLURAL [] xref: TAO:0000969 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000805 ! myotome somite 23 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000970 name: slow muscle cell somite 26 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 26." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "slow muscle cells somite 26" EXACT PLURAL [] xref: TAO:0000970 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000807 ! myotome somite 26 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000971 name: slow muscle cell somite 29 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 29." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "slow muscle cells somite 29" EXACT PLURAL [] xref: TAO:0000971 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000808 ! myotome somite 29 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000972 name: slow muscle cell somite 4 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 4." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "slow muscle cells somite 4" EXACT PLURAL [] xref: TAO:0000972 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000809 ! myotome somite 4 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000973 name: slow muscle cell somite 7 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 7." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "slow muscle cells somite 7" EXACT PLURAL [] xref: TAO:0000973 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000810 ! myotome somite 7 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000974 name: somite 10 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576] xref: TAO:0000974 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000975 name: somite 13 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576] xref: TAO:0000975 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000976 name: somite 16 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576] xref: TAO:0000976 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000977 name: somite 19 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576] xref: TAO:0000977 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0000978 name: somite 22 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576] xref: TAO:0000978 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000979 name: hypaxial region somite 24 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000979 is_a: ZFA:0001085 ! hypaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000930 ! myotome somite 24 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000980 name: somite 25 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576] xref: TAO:0000980 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0000981 name: somite 29 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576] xref: TAO:0000981 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0000982 name: somite 6 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576] xref: TAO:0000982 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000983 name: somite 9 namespace: zebrafish_anatomy def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576] xref: TAO:0000983 is_a: ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000984 name: superior reticular formation tegmentum namespace: zebrafish_anatomy xref: TAO:0000984 is_a: ZFA:0005575 ! brain nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000160 ! tegmentum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000985 name: ventral rhombencephalic commissure medulla oblongata namespace: zebrafish_anatomy xref: TAO:0000985 is_a: ZFA:0001682 ! white matter relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000986 name: hypaxial region somite 27 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000986 is_a: ZFA:0001085 ! hypaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000931 ! myotome somite 27 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000987 name: hypaxial region somite 3 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000987 is_a: ZFA:0001085 ! hypaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000932 ! myotome somite 3 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000988 name: hypaxial region somite 5 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000988 is_a: ZFA:0001085 ! hypaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000933 ! myotome somite 5 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000989 name: hypaxial region somite 8 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000989 is_a: ZFA:0001085 ! hypaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000934 ! myotome somite 8 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000990 name: intermediate mesenchyme namespace: zebrafish_anatomy xref: TAO:0000990 is_a: ZFA:0000081 ! trunk mesenchyme relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000991 name: epaxial region somite 10 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0000991 is_a: ZFA:0001084 ! epaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001013 ! myotome somite 10 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000992 name: lateral migration pathway mesenchyme namespace: zebrafish_anatomy xref: TAO:0000992 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000999 ! mesenchyme derived from trunk neural crest relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000993 name: lateral wall neural rod namespace: zebrafish_anatomy def: "Portion of tissue located at either side of the neural rod." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] xref: TAO:0000993 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000026 ! Segmentation:14-19 somites relationship: part_of ZFA:0000133 ! neural rod relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000994 name: lateral wall rhombomere 3 namespace: zebrafish_anatomy def: "Multi-tissue structure forming the sides of the lumen of the neural tube in rhombomere 3." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] xref: TAO:0000994 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000948 ! rhombomere 3 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000995 name: lateral wall rhombomere 6 namespace: zebrafish_anatomy def: "Multi-tissue structure forming the sides of the lumen of the neural tube in rhombomere 6." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] xref: TAO:0000995 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000069 ! rhombomere 6 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0000996 name: lateral wall spinal cord namespace: zebrafish_anatomy def: "Multi-tissue structure forming the sides of the lumen of the spinal cord." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] xref: TAO:0000996 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000075 ! spinal cord relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0000997 name: medial funicular nucleus trigeminal nucleus namespace: zebrafish_anatomy def: "Sensory trigeminal nucleus located at the end of the medulla oblongata." [ZFIN:ZDB-PUB-961014-1280] synonym: "medial funicular nucleus trigeminal nuclei" EXACT PLURAL [] xref: TAO:0000997 is_a: ZFA:0000433 ! sensory trigeminal nucleus relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0000998 name: mesenchyme derived from head mesoderm namespace: zebrafish_anatomy xref: TAO:0000998 is_a: ZFA:0000113 ! head mesenchyme relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0000999 name: mesenchyme derived from trunk neural crest namespace: zebrafish_anatomy xref: TAO:0000999 is_a: ZFA:0000081 ! trunk mesenchyme relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0001000 name: mesenchyme pectoral fin namespace: zebrafish_anatomy def: "Mesenchyme that is part of the pectoral fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "mesenchyme pectoral fins" EXACT PLURAL [] xref: TAO:0001000 is_a: ZFA:0000393 ! mesenchyme relationship: develops_from ZFA:0000789 ! mesoderm pectoral fin bud relationship: end ZFS:0000035 ! Larval:Protruding-mouth relationship: part_of ZFA:0001161 ! pectoral fin relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0001001 name: epaxial region somite 13 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0001001 is_a: ZFA:0001084 ! epaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001014 ! myotome somite 13 relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0001002 name: peripheral motor axons namespace: zebrafish_anatomy comment: Consider post-composing ZFA:0009052 motor neuron with GO:0030424 axon xref: TAO:0001002 is_obsolete: true [Term] id: ZFA:0001003 name: muscle pioneer somite 12 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 12." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "muscle pioneers somite 12" EXACT PLURAL [] xref: TAO:0001003 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000851 ! somite 12 relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0001004 name: muscle pioneer somite 15 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 15." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "muscle pioneers somite 15" EXACT PLURAL [] xref: TAO:0001004 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000852 ! somite 15 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0001005 name: muscle pioneer somite 18 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 18." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "muscle pioneers somite 18" EXACT PLURAL [] xref: TAO:0001005 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000853 ! somite 18 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0001006 name: muscle pioneer somite 21 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 21." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "muscle pioneers somite 21" EXACT PLURAL [] xref: TAO:0001006 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000854 ! somite 21 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0001007 name: muscle pioneer somite 24 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 24." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "muscle pioneers somite 24" EXACT PLURAL [] xref: TAO:0001007 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000855 ! somite 24 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0001008 name: muscle pioneer somite 27 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 27." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "muscle pioneers somite 27" EXACT PLURAL [] xref: TAO:0001008 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000731 ! somite 27 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001009 name: muscle pioneer somite 3 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 3." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "muscle pioneers somite 3" EXACT PLURAL [] xref: TAO:0001009 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000732 ! somite 3 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0001010 name: muscle pioneer somite 5 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 5." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "muscle pioneers somite 5" EXACT PLURAL [] xref: TAO:0001010 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000073 ! somite 5 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0001011 name: muscle pioneer somite 8 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 8." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "muscle pioneers somite 8" EXACT PLURAL [] xref: TAO:0001011 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000858 ! somite 8 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001012 name: epaxial region somite 16 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0001012 is_a: ZFA:0001084 ! epaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000927 ! myotome somite 16 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0001013 name: myotome somite 10 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0001013 is_a: ZFA:0001056 ! myotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000974 ! somite 10 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001014 name: myotome somite 13 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0001014 is_a: ZFA:0001056 ! myotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000975 ! somite 13 relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0001015 name: myotome somite 17 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0001015 is_a: ZFA:0001056 ! myotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000727 ! somite 17 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0001016 name: myotome somite 2 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0001016 is_a: ZFA:0001056 ! myotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000728 ! somite 2 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0001017 name: myotome somite 22 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0001017 is_a: ZFA:0001056 ! myotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000978 ! somite 22 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0001018 name: myotome somite 25 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0001018 is_a: ZFA:0001056 ! myotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000980 ! somite 25 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0001019 name: myotome somite 28 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0001019 is_a: ZFA:0001056 ! myotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000856 ! somite 28 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001020 name: myotome somite 30 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0001020 is_a: ZFA:0001056 ! myotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000157 ! somite 30 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001021 name: myotome somite 6 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0001021 is_a: ZFA:0001056 ! myotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000982 ! somite 6 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001022 name: myotome somite 9 namespace: zebrafish_anatomy def: "Portion of the somite giving rise to body wall muscle masses." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0001022 is_a: ZFA:0001056 ! myotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000983 ! somite 9 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001023 name: epaxial region somite 19 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0001023 is_a: ZFA:0001084 ! epaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000928 ! myotome somite 19 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0001024 name: trunk neural crest namespace: zebrafish_anatomy def: "Neural crest that is part of the trunk." [GOC:ymb, ORCiD:0000-0002-9900-7880] xref: TAO:0001024 is_a: ZFA:0000045 ! neural crest relationship: end ZFS:0000031 ! Pharyngula:Prim-25 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001025 name: occipital lateral line neuromast namespace: zebrafish_anatomy def: "Neuromast that is part of the occipital lateral line. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576] synonym: "neuromast occipital" EXACT [] synonym: "neuromasts occipital" EXACT PLURAL [] xref: TAO:0001025 is_a: ZFA:0000243 ! neuromast relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000400 ! occipital lateral line relationship: start ZFS:0000036 ! Larval:Day 4 [Term] id: ZFA:0001026 name: supraorbital lateral line neuromast namespace: zebrafish_anatomy def: "Neuromast that is part of the supraorbital lateral line. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576] synonym: "neuromast supraorbital" EXACT [] synonym: "neuromasts supraorbital" EXACT PLURAL [] xref: TAO:0001026 is_a: ZFA:0000243 ! neuromast relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000443 ! supraorbital lateral line relationship: start ZFS:0000036 ! Larval:Day 4 [Term] id: ZFA:0001027 name: oral cavity namespace: zebrafish_anatomy def: "Space within the oral region." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "buccal cavity" EXACT [] synonym: "buccal chamber" EXACT [] xref: TAO:0001027 is_a: ZFA:0001643 ! anatomical space relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000590 ! oral region relationship: start ZFS:0000035 ! Larval:Protruding-mouth [Term] id: ZFA:0001028 name: hypurapophysis namespace: zebrafish_anatomy def: "The paired bony lateral extensions off the parhypural." [ZFIN:ZDB-PUB-011008-1] synonym: "hypurapophyses" EXACT PLURAL [] synonym: "parhypurapophysis" EXACT [] synonym: "parhypurapophysis process" EXACT [] xref: TAO:0001028 is_a: ZFA:0000859 ! specialized hemal arch and spine relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000438 ! parhypural relationship: start ZFS:0000040 ! Larval:Days 14-20 [Term] id: ZFA:0001029 name: inner limiting membrane namespace: zebrafish_anatomy def: "Membrane on the apical surface of the retina. The retinal vasculature becomes adhered to the apical surface of the ILM by 30dpf." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-071023-7, ZFIN:ZDB-PUB-120529-3] synonym: "ILM" EXACT [] synonym: "inner limiting membranes" EXACT PLURAL [] xref: TAO:0001029 is_a: ZFA:0000382 ! acellular anatomical structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000046 ! retinal neural layer relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001030 name: epaxial region somite 21 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0001030 is_a: ZFA:0001084 ! epaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000929 ! myotome somite 21 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0001031 name: rhombomere 1 namespace: zebrafish_anatomy def: "Hindbrain segment or neuromere." [ZFIN:ZDB-PUB-961014-576] synonym: "r1" EXACT [] xref: TAO:0001031 is_a: ZFA:0001064 ! rhombomere relationship: develops_from ZFA:0001207 ! presumptive rhombomere 1 relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001032 name: rhombomere 4 namespace: zebrafish_anatomy def: "Hindbrain segment or neuromere." [ZFIN:ZDB-PUB-961014-576] synonym: "r4" EXACT [] xref: TAO:0001032 is_a: ZFA:0001064 ! rhombomere relationship: develops_from ZFA:0001212 ! presumptive rhombomere 4 relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001033 name: roof plate rhombomere 1 namespace: zebrafish_anatomy def: "Roof plate that is part of rhombomere 1." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] xref: TAO:0001033 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0001031 ! rhombomere 1 relationship: part_of ZFA:0001311 ! roof plate rhombomere region relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001034 name: roof plate rhombomere 4 namespace: zebrafish_anatomy def: "Roof plate that is part of rhombomere 4." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] xref: TAO:0001034 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0001032 ! rhombomere 4 relationship: part_of ZFA:0001311 ! roof plate rhombomere region relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001035 name: roof plate rhombomere 8 namespace: zebrafish_anatomy def: "Roof plate that is part of rhombomere 8." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] xref: TAO:0001035 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0000153 ! rhombomere 8 relationship: part_of ZFA:0001311 ! roof plate rhombomere region relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001036 name: sclerotome somite 10 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0001036 is_a: ZFA:0001080 ! sclerotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000974 ! somite 10 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001037 name: sclerotome somite 13 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0001037 is_a: ZFA:0001080 ! sclerotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000975 ! somite 13 relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0001038 name: sclerotome somite 16 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0001038 is_a: ZFA:0001080 ! sclerotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000976 ! somite 16 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0001039 name: sclerotome somite 19 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0001039 is_a: ZFA:0001080 ! sclerotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000977 ! somite 19 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0001040 name: epaxial region somite 24 namespace: zebrafish_anatomy def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0001040 is_a: ZFA:0001084 ! epaxial myotome region relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000930 ! myotome somite 24 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0001041 name: sclerotome somite 21 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0001041 is_a: ZFA:0001080 ! sclerotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000854 ! somite 21 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0001042 name: sclerotome somite 24 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0001042 is_a: ZFA:0001080 ! sclerotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000855 ! somite 24 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0001043 name: sclerotome somite 27 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0001043 is_a: ZFA:0001080 ! sclerotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000731 ! somite 27 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001044 name: sclerotome somite 3 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0001044 is_a: ZFA:0001080 ! sclerotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000732 ! somite 3 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0001045 name: sclerotome somite 5 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0001045 is_a: ZFA:0001080 ! sclerotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000073 ! somite 5 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0001046 name: sclerotome somite 8 namespace: zebrafish_anatomy def: "Medial ventral region of the somite that will form vertebral cartilages." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0001046 is_a: ZFA:0001080 ! sclerotome relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000858 ! somite 8 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001047 name: slow muscle cell somite 10 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 10." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "slow muscle cells somite 10" EXACT PLURAL [] xref: TAO:0001047 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001013 ! myotome somite 10 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001048 name: slow muscle cell somite 13 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 13." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "slow muscle cells somite 13" EXACT PLURAL [] xref: TAO:0001048 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001014 ! myotome somite 13 relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0001049 name: slow muscle cell somite 16 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 16." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "slow muscle cells somite 16" EXACT PLURAL [] xref: TAO:0001049 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000927 ! myotome somite 16 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0001050 name: slow muscle cell somite 19 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 19." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "slow muscle cells somite 19" EXACT PLURAL [] xref: TAO:0001050 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000928 ! myotome somite 19 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0001051 name: caudal division of the internal carotid artery namespace: zebrafish_anatomy def: "Branch of the internal carotid artery that extends caudally along the sides of the midbrain and eventually drains into the basilar artery via the posterior communicating artery." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-140605-9] synonym: "CaDI" EXACT [] synonym: "posterior cerebral carotid artery" EXACT [] synonym: "posterior rami of the cerebral carotid artery" EXACT [] xref: TAO:0001051 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0005081 ! internal carotid artery relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001052 name: primordial hindbrain channel namespace: zebrafish_anatomy def: "The paired vessels that run along the lateral walls of the hindbrain and drain into the anterior cardinal veins." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5] synonym: "medial head vein" EXACT [] synonym: "PHBC" EXACT [] xref: TAO:0001052 is_a: ZFA:0000082 ! vein relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0005297 ! cranial blood vessel relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001053 name: primitive internal carotid artery namespace: zebrafish_anatomy def: "Artery that originates as rostral extensions of the paired lateral dorsal aorta. The primitive internal carotid artery splits to form caudal and cranial divisions. The primitive internal carotid artery is paired." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5] synonym: "PICA" EXACT [] xref: TAO:0001053 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001054 name: lateral dorsal aorta namespace: zebrafish_anatomy def: "Connect the outflow of the aortic arches to the dorsal aorta. The place where the lateral dorsal aorta fuse is called the radix of the aorta." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5] synonym: "LDA" EXACT [] xref: TAO:0001054 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001055 name: pronephric duct opening namespace: zebrafish_anatomy def: "The juncture where the pronephric ducts empty into the cloaca." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "pronephric duct openings" EXACT PLURAL [] synonym: "urogenital opening" RELATED [ZFIN:ZDB-PUB-060508-11] xref: TAO:0001055 is_a: ZFA:0001643 ! anatomical space relationship: end ZFS:0000039 ! Larval:Days 7-13 relationship: part_of ZFA:0000150 ! pronephric duct relationship: part_of ZFA:0000330 ! cloacal chamber relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0001056 name: myotome namespace: zebrafish_anatomy def: "Muscle that develops from somite and gives rise to body wall muscle masses." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-576] synonym: "myomeres" EXACT [ZFIN:ZDB-PUB-961014-576] xref: TAO:0001056 is_a: ZFA:0005145 ! muscle relationship: develops_from ZFA:0000155 ! somite relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000473 ! trunk musculature relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0001057 name: intersegmental vein namespace: zebrafish_anatomy def: "Veins that connect the posterior cardinal vein and the dorsal longitudinal anastomotic vessel. They run along the vertical myotomal boundaries. They form from primary intersegmental vessels that are contacted by secondary angiogenic sprouts from the posterior cardinal vein and take on the characteristics of veins. These eventually link with other secondary sprouts from the posterior cardinal vein to form the parachordal vessel." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-030908-4] synonym: "ISV" EXACT [] xref: TAO:0001057 is_a: ZFA:0000082 ! vein is_a: ZFA:0001285 ! intersegmental vessel relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0001058 name: caudal fin namespace: zebrafish_anatomy def: "Fin that is the most posterior median fin. It is composed of a complex of three modified centra and modified neural and hemal arches and spines." [ZFIN:ZDB-PUB-011008-1] synonym: "tail" EXACT [] synonym: "tail fin" EXACT [] xref: TAO:0001058 is_a: ZFA:0005597 ! median fin relationship: develops_from ZFA:0001069 ! ventral fin fold relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001117 ! post-vent region relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001059 name: cranial division of the internal carotid artery namespace: zebrafish_anatomy def: "Caudal branch of the internal carotid artery that gives rise to the branches that supply the diencephalon and telencephalon." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-140605-9] synonym: "anterior cerebral carotid artery" EXACT [] synonym: "anterior rami of the cerebral carotid artery" EXACT [] synonym: "CrDI" EXACT [] synonym: "rostral division of the internal carotid artery" EXACT [] xref: TAO:0001059 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0005081 ! internal carotid artery relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001060 name: basidorsal namespace: zebrafish_anatomy def: "Basidorsals are bilaterally paired cartilages on the dorsolateral side of the notochord which are replaced by ossified neural arches or dorsal arcocentra. In otophysan fishes, basidorsal 1, bd2, bd3, and bd4 give rise to parts of the Weberian apparatus." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "arcualia" RELATED [] xref: TAO:0001060 is_a: ZFA:0001457 ! postcranial axial cartilage relationship: end ZFS:0000039 ! Larval:Days 7-13 relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001061 name: intersegmental artery namespace: zebrafish_anatomy def: "Arteries that connect the dorsal aorta and the dorsal longitudinal anastomotic vessel. They run along the vertical myotomal boundaries. At early stages these vessels don't have venous or arterial markers. They form from the primary sprouts from the dorsal aorta." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-030908-4] synonym: "intersegmental arteries" EXACT PLURAL [] xref: TAO:0001061 is_a: ZFA:0000005 ! artery is_a: ZFA:0001285 ! intersegmental vessel relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0001062 name: primitive mesencephalic artery namespace: zebrafish_anatomy def: "Artery that branches dorsally from the cranial division of the internal carotid artery, then curves caudally along the dorsal medial wall of the eye capsule to drain into the PMBC just rostral to the midbrain hindbrain boundary." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "PMsA" EXACT [] xref: TAO:0001062 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000032 ! Pharyngula:High-pec relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001063 name: posterior caudal vein namespace: zebrafish_anatomy xref: TAO:0001063 is_a: ZFA:0000082 ! vein relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0005037 ! post-vent vasculature relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001064 name: rhombomere namespace: zebrafish_anatomy def: "A segment of the developing hindbrain." [ZFIN:ZDB-PUB-961014-576] synonym: "hindbrain segment" EXACT [] synonym: "neuromere" RELATED [] synonym: "rhombomeres" EXACT PLURAL [] xref: TAO:0001064 is_a: ZFA:0001328 ! neuromere relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000029 ! hindbrain relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001065 name: lateral mesoderm namespace: zebrafish_anatomy xref: TAO:0001065 is_a: ZFA:0000041 ! mesoderm relationship: end ZFS:0000027 ! Segmentation:20-25 somites relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0001066 name: neural arch namespace: zebrafish_anatomy def: "A neural arch encloses the neural canal and typically meets its partner to form a neural spine. The neural arch can be a replacement ossification of the basidorsal cartilage or can form directly in membrane bone." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "dorsal arcocentrum" EXACT [] xref: TAO:0001066 is_a: ZFA:0001591 ! endochondral bone relationship: develops_from ZFA:0001060 ! basidorsal relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001189 ! vertebra relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0001067 name: anterior cerebral vein namespace: zebrafish_anatomy def: "Vein that branches from the primordial hindbrain channel (PHBC) at 1.3 dpf. The primitive prosencephalic artery drains into the anterior cerebral vein (ACeV) as do the prosencephalic artery and the nasal vein." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5] synonym: "ACeV" EXACT [] synonym: "rostral cerebral vein" EXACT [] xref: TAO:0001067 is_a: ZFA:0000082 ! vein relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0005297 ! cranial blood vessel relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001068 name: mesencephalic artery namespace: zebrafish_anatomy def: "Artery in the midbrain that develops from the proximal portion of the primitive mesencephalic artery." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5] synonym: "MsA" EXACT [] xref: TAO:0001068 is_a: ZFA:0000005 ! artery relationship: develops_from ZFA:0001062 ! primitive mesencephalic artery relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0001069 name: ventral fin fold namespace: zebrafish_anatomy def: "Region of the median fin fold that develops into the anal and caudal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "anal fin fold" EXACT [] synonym: "tail fin fold" EXACT [] synonym: "ventral fin" EXACT [] xref: TAO:0001069 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000037 ! Larval:Day 5 relationship: part_of ZFA:0000040 ! median fin fold relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0001070 name: presumptive pronephric mesoderm namespace: zebrafish_anatomy def: "Presumptive structure part of the intermediate mesoderm, that is fated to become pronephric mesoderm." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "nephron primordium" EXACT [] xref: TAO:0001070 is_a: ZFA:0001116 ! presumptive structure relationship: end ZFS:0000022 ! Gastrula:Bud relationship: part_of ZFA:0001206 ! intermediate mesoderm relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0001071 name: presumptive neural retina namespace: zebrafish_anatomy def: "Portion of tissue that is the inner layer of the optic cup and will become the neural retina." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "inner layer optic cup" EXACT [] synonym: "presumptive retinas" EXACT PLURAL [] xref: TAO:0001071 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0001202 ! optic cup relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0001072 name: thyroid follicle namespace: zebrafish_anatomy def: "Portion of tissue formed form thyroid follicle cells that forms along the midline in pharyngeal mesenchyme. The follicles are not encapsulated by connective tissue." [ZFIN:ZDB-PUB-060517-11] synonym: "thyroid follicles" EXACT PLURAL [] xref: TAO:0001072 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0001081 ! thyroid primordium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001158 ! endocrine system relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0001073 name: axial vasculature namespace: zebrafish_anatomy def: "Vasculature that runs along the rostral-caudal axis of the fish." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0001073 is_a: ZFA:0005249 ! vasculature relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0001074 name: taste bud namespace: zebrafish_anatomy def: "Pear or onion-shaped intraepithelial sensory endorgans. They sit on a small dermal papilla and consist of modified epithelial cells of different types. The taste buds are located in the mouth, in the oropharyngeal cavity, on the head and on the barbels. They are innervated by either the facial (VII), the glossopharyngeal (IX), or the vagal (X) cranial nerve." [ZFIN:ZDB-PUB-020403-3] comment: Taste buds are made up of vertically oriented, elongate cells form the sensory epithelium of the organ: dark cells with many small microvilli, and light cells with one large microvillus as an apical ending. Between the dark and light cells and the basal lamina, the basal cells stretch horizontally. synonym: "taste buds" EXACT PLURAL [] xref: TAO:0001074 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001101 ! gustatory system relationship: start ZFS:0000035 ! Larval:Protruding-mouth [Term] id: ZFA:0001075 name: choroidal fissure namespace: zebrafish_anatomy def: "The narrow cleft along the medial wall of the lateral ventricle along the margins of which the choroid plexus is attached; it lies between the upper surface of the thalamus and lateral edge of the fornix in the central part of the ventricle and between the terminal stria and fimbria hippocampi in the inferior horn." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "choroidal fissures" EXACT PLURAL [] xref: TAO:0001075 is_a: ZFA:0001643 ! anatomical space relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000008 ! brain relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001076 name: intestinal bulb namespace: zebrafish_anatomy def: "The bulbous anteriormost portion of the intestine has the most digestive enzymes and the greatest epithelial surface area." [ZFIN:ZDB-PUB-050120-6] synonym: " pseudogaster " EXACT [ISBN:3510650670] synonym: "anterior intestine" EXACT [] synonym: "foregut" RELATED [] xref: TAO:0001076 is_a: ZFA:0001488 ! multi-tissue structure relationship: develops_from ZFA:0005738 ! intestinal bulb primordium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001338 ! intestine relationship: start ZFS:0000032 ! Pharyngula:High-pec [Term] id: ZFA:0001077 name: thymus primordium namespace: zebrafish_anatomy def: "A small outgrowth of the pharyngeal epithelium that is the site of lymphocyte cell production." [ZFIN:ZDB-PUB-990414-60] synonym: "thymic rudiment" EXACT [] xref: TAO:0001077 is_a: ZFA:0001486 ! epithelium relationship: develops_from ZFA:0000818 ! vagal neural crest relationship: develops_from ZFA:0001104 ! pharyngeal endoderm relationship: end ZFS:0000035 ! Larval:Protruding-mouth relationship: part_of ZFA:0001159 ! immune system relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0001078 name: thymus namespace: zebrafish_anatomy def: "Paired organ where maturation of T-lymphocytes occurs. The adult thymus located on the dorsomedial aspect of the branchial cavity above the third pharyngeal cartilage. The thymus undergoes a period of rapid growth beginning at about the third week and continuing for several more weeks. Accompanying this growth is a dramatic change in the shape of the thymus. It is ovoid initially and then starts to grow dorsally along the skull, forming a characteristic protrusion. During this growth period the adult pattern of rag1-positive cortex and rag1-negative medulla becomes established. The protrusions diminish with age and the thymus gradually shrinks; at two years, the thymus is again confined to the pharynx with minimal if any protrusion." [ZFIN:ZDB-PUB-040216-26, ZFIN:ZDB-PUB-110609-55] xref: TAO:0001078 is_a: ZFA:0000496 ! compound organ relationship: develops_from ZFA:0001077 ! thymus primordium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001159 ! immune system relationship: start ZFS:0000035 ! Larval:Protruding-mouth [Term] id: ZFA:0001079 name: blood vasculature namespace: zebrafish_anatomy def: "Is an interconnected tubular multi-tissue structure that contains blood that is actively transported around the organism." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "blood vessel" RELATED [] xref: TAO:0001079 is_a: ZFA:0001490 ! cavitated compound organ is_a: ZFA:0005249 ! vasculature relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0001080 name: sclerotome namespace: zebrafish_anatomy def: "Portion of somite that gives rise to skeletal elements." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "sclerotomes" EXACT PLURAL [] xref: TAO:0001080 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0000155 ! somite relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0001081 name: thyroid primordium namespace: zebrafish_anatomy def: "Portion of tissue part of the pharyngeal endoderm that is fated to become thyroid follicle." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] synonym: "thyroid primordia" EXACT PLURAL [] xref: TAO:0001081 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0001104 ! pharyngeal endoderm relationship: end ZFS:0000033 ! Hatching:Long-pec relationship: part_of ZFA:0001158 ! endocrine system relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0001082 name: chordo neural hinge namespace: zebrafish_anatomy def: "Portion of tissue that is posterior to the developing notochord during tail bud extension." [ZFIN:ZDB-PUB-970723-15] xref: TAO:0001082 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0000077 ! tail bud relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0001083 name: ventricular zone namespace: zebrafish_anatomy def: "Proliferative region that is part of the ventricular system. The cells directly face the ventricle." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "ventricular zones" EXACT PLURAL [] xref: TAO:0001083 is_a: ZFA:0000098 ! proliferative region relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001261 ! ventricular system relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001084 name: epaxial myotome region namespace: zebrafish_anatomy synonym: "epaxial myotome regions" EXACT PLURAL [] xref: TAO:0001084 is_a: ZFA:0005145 ! muscle relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001056 ! myotome relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0001085 name: hypaxial myotome region namespace: zebrafish_anatomy synonym: "hypaxial muscle" EXACT [] xref: TAO:0001085 is_a: ZFA:0005145 ! muscle relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001056 ! myotome relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0001086 name: muscle pioneer namespace: zebrafish_anatomy def: "Cells that develop from adaxial cells that express engrailed and do not migrate completely to the lateral surface of the myotome, and instead extend from the notochord to the lateral surface of the somite, at the level of the future horizontal myoseptum." [ZFIN:ZDB-PUB-961219-12] subset: cell_slim synonym: "muscle pioneers" EXACT PLURAL [] synonym: "non migratory adaxial cells" EXACT [] xref: TAO:0001086 is_a: ZFA:0009114 ! muscle cell relationship: develops_from ZFA:0000003 ! adaxial cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000155 ! somite relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0001089 name: myoseptum namespace: zebrafish_anatomy synonym: "myocommata" EXACT [ZFIN:ZDB-PUB-151106-17] synonym: "myosepta" EXACT PLURAL [] xref: TAO:0001089 is_a: ZFA:0000382 ! acellular anatomical structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001056 ! myotome relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0001093 name: unspecified namespace: zebrafish_anatomy def: "Annotation with this anatomy term indicates that a structure was not specified by the author." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001093 is_a: ZFA:0100000 ! zebrafish anatomical entity relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000001 ! Zygote:1-cell [Term] id: ZFA:0001094 name: whole organism namespace: zebrafish_anatomy def: "Anatomical structure that is an individual member of Danio rerio." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "multi-cellular organism" EXACT [] xref: CARO:0000012 xref: TAO:0001094 is_a: ZFA:0000037 ! anatomical structure relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000001 ! Zygote:1-cell [Term] id: ZFA:0001095 name: immature macula namespace: zebrafish_anatomy def: "Is an otic sensory epithelium that will develop into the mature macula." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "immature maculae" EXACT PLURAL [] synonym: "immature sensory patch" EXACT [] synonym: "immature sensory patches" EXACT PLURAL [] xref: TAO:0001095 is_a: ZFA:0007070 ! otic sensory epithelium relationship: end ZFS:0000036 ! Larval:Day 4 relationship: part_of ZFA:0000051 ! otic vesicle relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0001096 name: immature anterior macula namespace: zebrafish_anatomy def: "Is an otic sensory epithelium that will develop into the mature anterior macula." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "immature anterior maculae" EXACT PLURAL [] xref: TAO:0001096 is_a: ZFA:0007070 ! otic sensory epithelium relationship: end ZFS:0000036 ! Larval:Day 4 relationship: part_of ZFA:0001095 ! immature macula relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0001097 name: immature posterior macula namespace: zebrafish_anatomy def: "Is an otic sensory epithelium that will develop into the mature posterior macula." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "immature posterior maculae" EXACT PLURAL [] xref: TAO:0001097 is_a: ZFA:0007070 ! otic sensory epithelium relationship: end ZFS:0000036 ! Larval:Day 4 relationship: part_of ZFA:0001095 ! immature macula relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0001098 name: immature hair cell anterior macula namespace: zebrafish_anatomy def: "A hair cell which is immature and located in the anterior macula. It will develop into a hair cell of the anterior macula." [GOC:ymb, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "immature sensory hair cells anterior macula" EXACT PLURAL [] xref: TAO:0001098 is_a: ZFA:0009366 ! hair cell relationship: end ZFS:0000036 ! Larval:Day 4 relationship: part_of ZFA:0001096 ! immature anterior macula relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0001099 name: immature hair cell posterior macula namespace: zebrafish_anatomy def: "A hair cell which is immature and located in the posterior macula. It will develop into a hair cell of the posterior macula." [GOC:ymb, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "immature sensory hair cells posterior macula" EXACT PLURAL [] xref: TAO:0001099 is_a: ZFA:0009366 ! hair cell relationship: end ZFS:0000036 ! Larval:Day 4 relationship: part_of ZFA:0001097 ! immature posterior macula relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0001100 name: hepatic duct namespace: zebrafish_anatomy def: "A duct that carries bile from the liver to the intestine." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0001100 is_a: ZFA:0005162 ! digestive system duct relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000036 ! liver and biliary system relationship: start ZFS:0000032 ! Pharyngula:High-pec [Term] id: ZFA:0001101 name: gustatory system namespace: zebrafish_anatomy def: "Sensory system that uses taste buds to sense chemical compounds." [ZFIN:ZDB-PUB-961014-1280] xref: TAO:0001101 is_a: ZFA:0000282 ! sensory system relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000035 ! Larval:Protruding-mouth [Term] id: ZFA:0001104 name: pharyngeal endoderm namespace: zebrafish_anatomy xref: TAO:0001104 is_a: ZFA:0000017 ! endoderm disjoint_from: ZFA:0005737 ! intestinal rod relationship: end ZFS:0000030 ! Pharyngula:Prim-15 relationship: part_of ZFA:0000056 ! pharynx relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001105 name: embryonic structure namespace: zebrafish_anatomy def: "Anatomical structure that is part of the embryo and is comprised of portions of tissue or cells." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "embryonic structures" EXACT PLURAL [] xref: TAO:0001105 is_a: ZFA:0000037 ! anatomical structure relationship: end ZFS:0000038 ! Larval:Day 6 relationship: part_of ZFA:0001094 ! whole organism relationship: start ZFS:0000001 ! Zygote:1-cell [Term] id: ZFA:0001106 name: pharyngeal pouch namespace: zebrafish_anatomy def: "Outpocketings of pharyngeal endoderm that interdigitate with the neural crest derived pharyngeal arches. The pouches later fuse with the surface ectoderm to form the gill slits." [ZFIN:ZDB-PUB-041029-8] synonym: "pharyngeal pouches" EXACT PLURAL [] xref: TAO:0001106 is_a: ZFA:0001488 ! multi-tissue structure relationship: develops_from ZFA:0001104 ! pharyngeal endoderm relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000056 ! pharynx relationship: part_of ZFA:0001306 ! pharyngeal arch relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0001107 name: internal gill bud namespace: zebrafish_anatomy def: "Portion of tissue that develops into a gill." [ZFIN:ZDB-PUB-041216-7] synonym: "internal gill buds" EXACT PLURAL [] xref: TAO:0001107 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0001106 ! pharyngeal pouch relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000056 ! pharynx relationship: start ZFS:0000036 ! Larval:Day 4 [Term] id: ZFA:0001108 name: anterior commissure namespace: zebrafish_anatomy def: "Telencephalic white matter (commissure) which connects the two cerebral hemispheres across the midline." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "commissura anterior" EXACT [] synonym: "commissura rostral" EXACT [] synonym: "rostral commissure" EXACT [] xref: TAO:0001108 is_a: ZFA:0000597 ! telencephalic white matter relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001109 name: oocyte namespace: zebrafish_anatomy alt_id: ZFA:0009008 def: "A female germ cell that has entered meiosis." [GOC:tfm, ISBN:0721662544] comment: I think the term we really want is CL:0000023. subset: cell_slim synonym: "egg" RELATED [] xref: CL:0000023 xref: TAO:0001109 is_a: ZFA:0009016 ! germ line cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001110 ! ovarian follicle relationship: start ZFS:0000042 ! Juvenile:Days 30-44 [Term] id: ZFA:0001110 name: ovarian follicle namespace: zebrafish_anatomy def: "Oocyte development of zebrafish has been divided into five stages based on morphological criteria and on physiological and biochemical events. Stage I follicles (less than 140 microns) are primary growth stage, stage II follicles (140-340 microns) are cortical alveolus stage, stage III (340-690 microns) are vitellogenesis, stage IV (690-730 microns) are oocyte maturation, and stage V follicles are matured egg." [ZFIN:ZDB-PUB-961014-1020] synonym: "egg follicle" EXACT [] xref: TAO:0001110 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000403 ! ovary relationship: start ZFS:0000042 ! Juvenile:Days 30-44 [Term] id: ZFA:0001111 name: zona radiata namespace: zebrafish_anatomy def: "Acellular anatomic structure that is a layer that separates the developing oocyte and the granulosa cell layer." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "vitelline envelope" EXACT [] xref: TAO:0001111 is_a: ZFA:0000382 ! acellular anatomical structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001110 ! ovarian follicle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001112 name: granulosa cell layer namespace: zebrafish_anatomy def: "Portion of tissue part of the ovarian follicle containing a single layer of granulosa cells that surround the developing oocyte." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "granulosa cell layers" EXACT PLURAL [] xref: TAO:0001112 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001110 ! ovarian follicle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001113 name: thecal cell layer namespace: zebrafish_anatomy def: "Multi-tissue structure of the ovarian follicle, composed of stromal cells and capillaries that covers oocytes. The thecal layer is external to the granulosa cell layer." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "thecal cell layers" EXACT PLURAL [] xref: TAO:0001113 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001110 ! ovarian follicle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001114 name: head namespace: zebrafish_anatomy def: "Organism subdivision which is the part of the body which consists of the cranial and pharyngeal regions." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001114 is_a: ZFA:0001308 ! organism subdivision relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0001115 name: trunk namespace: zebrafish_anatomy def: "Organism subdivision which is the part of the body posterior to the head and anterior to the post-vent region." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001115 is_a: ZFA:0001308 ! organism subdivision relationship: develops_from ZFA:0000077 ! tail bud relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0001116 name: presumptive structure namespace: zebrafish_anatomy def: "Portion of embryonic tissue determined by fate mapping to become a structure." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] synonym: "presumptive structures" EXACT PLURAL [] xref: TAO:0001116 is_a: ZFA:0001105 ! embryonic structure relationship: end ZFS:0000032 ! Pharyngula:High-pec relationship: start ZFS:0000014 ! Blastula:Sphere [Term] id: ZFA:0001117 name: post-vent region namespace: zebrafish_anatomy def: "Organism subdivision which is the part of the body posterior to the vent which includes the anal and caudal fins." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "tail" RELATED [] xref: TAO:0001117 is_a: ZFA:0001308 ! organism subdivision relationship: develops_from ZFA:0000077 ! tail bud relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0001118 name: urogenital papilla namespace: zebrafish_anatomy def: "A protuberance in front of the gential pore and behind the vent. Mature females have a well developed urogenital papillae whilst in mature males it is poorly developed." [ZFIN:ZDB-PUB-040526-4] synonym: "anal papilla" EXACT [] synonym: "anal papillae" EXACT [] synonym: "genital papilla" EXACT [] synonym: "UGP" EXACT [] synonym: "urogenital papillae" EXACT PLURAL [] xref: TAO:0001118 is_a: ZFA:0000292 ! surface structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000632 ! reproductive system relationship: start ZFS:0000038 ! Larval:Day 6 [Term] id: ZFA:0001119 name: dermis namespace: zebrafish_anatomy def: "A collagenous layer of the skin subjacent to the epidermis and covering the hypodermis. It contains various types of cells (e.g. fibroblasts, pigment cells, nerve, blood vessels and scales." [ZFIN:ZDB-PUB-040726-12] xref: TAO:0001119 is_a: ZFA:0001488 ! multi-tissue structure relationship: develops_from ZFA:0000255 ! paraxial mesoderm relationship: develops_from ZFA:0000787 ! mesenchyme derived from head neural crest relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000368 ! integument relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001120 name: neuroectoderm namespace: zebrafish_anatomy synonym: "neural ectoderm" EXACT [] synonym: "neurectoderm" EXACT [] xref: TAO:0001120 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000038 ! Larval:Day 6 relationship: part_of ZFA:0000016 ! ectoderm relationship: start ZFS:0000020 ! Gastrula:75%-epiboly [Term] id: ZFA:0001121 name: presumptive shield namespace: zebrafish_anatomy def: "Presumptive structure fated to become the shield. Defined by fate mapping." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001121 is_a: ZFA:0001116 ! presumptive structure relationship: end ZFS:0000018 ! Gastrula:Germ-ring relationship: start ZFS:0000016 ! Blastula:30%-epiboly [Term] id: ZFA:0001122 name: primary germ layer namespace: zebrafish_anatomy def: "Portion of tissue that consists of a layer of cells that form during embryogenesis that will give rise to all structures of the organism." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] synonym: "embryonic germ layers" EXACT [] xref: TAO:0001122 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000038 ! Larval:Day 6 relationship: start ZFS:0000020 ! Gastrula:75%-epiboly [Term] id: ZFA:0001123 name: axial fin skeleton namespace: zebrafish_anatomy def: "Postcranial axial skeleton that is unpaired and located on the sagittal plane of the organism." [TAO:curator] synonym: "median fin skeleton" EXACT [] synonym: "unpaired fin skeleton" EXACT [] xref: TAO:0001123 is_a: ZFA:0000317 ! postcranial axial skeleton relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000032 ! Pharyngula:High-pec [Term] id: ZFA:0001124 name: dorsal fin skeleton namespace: zebrafish_anatomy def: "Median fin skeleton located on the dorsal surface of the organism." [TAO:curator] xref: TAO:0001124 is_a: ZFA:0001123 ! axial fin skeleton relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001173 ! dorsal fin relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0001125 name: organizer inducing center namespace: zebrafish_anatomy def: "The dorsal marginal region of the YSL where maternal dorsal determinants localize. Participates in positioning the shield." [ZFIN:ZDB-PUB-991102-7] synonym: "Nieuwkoop center" EXACT [] xref: TAO:0001125 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000019 ! Gastrula:Shield relationship: part_of ZFA:0000088 ! yolk syncytial layer relationship: start ZFS:0000012 ! Blastula:High [Term] id: ZFA:0001126 name: noninvoluting endocytic marginal cell cluster namespace: zebrafish_anatomy def: "The NEM cell cluster lies in a superficial position of the dorsal blastoderm margin encompassing EVL cells and one or two layers of underlying deep cells. Unlike other marginal blastomeres, cells in this cluster do not participate in involution." [ZFIN:ZDB-PUB-970107-2] synonym: "NEM" EXACT [] synonym: "noninvoluting endocytic marginal cells" EXACT PLURAL [] xref: TAO:0001126 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000017 ! Gastrula:50%-epiboly relationship: part_of ZFA:0000038 ! margin relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001127 name: visual system namespace: zebrafish_anatomy def: "Sensory system responsible for the perception of light." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001127 is_a: ZFA:0000282 ! sensory system relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0001128 name: pharyngeal pouch 1 namespace: zebrafish_anatomy synonym: "pharyngeal pouches 1" EXACT PLURAL [] xref: TAO:0001128 is_a: ZFA:0001106 ! pharyngeal pouch relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0001129 name: pharyngeal pouches 2-6 namespace: zebrafish_anatomy xref: TAO:0001129 is_a: ZFA:0001106 ! pharyngeal pouch relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0001130 name: pharyngeal pouch 2 namespace: zebrafish_anatomy synonym: "pharyngeal pouches 2" EXACT PLURAL [] xref: TAO:0001130 is_a: ZFA:0001129 ! pharyngeal pouches 2-6 relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0001131 name: pharyngeal pouch 3 namespace: zebrafish_anatomy synonym: "pharyngeal pouches 3" EXACT PLURAL [] xref: TAO:0001131 is_a: ZFA:0001129 ! pharyngeal pouches 2-6 relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0001132 name: pharyngeal pouch 6 namespace: zebrafish_anatomy synonym: "pharyngeal pouches 6" EXACT PLURAL [] xref: TAO:0001132 is_a: ZFA:0001129 ! pharyngeal pouches 2-6 relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0001133 name: pharyngeal pouch 5 namespace: zebrafish_anatomy synonym: "pharyngeal pouches 5" EXACT PLURAL [] xref: TAO:0001133 is_a: ZFA:0001129 ! pharyngeal pouches 2-6 relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0001134 name: pharyngeal pouch 4 namespace: zebrafish_anatomy synonym: "pharyngeal pouches 4" EXACT PLURAL [] xref: TAO:0001134 is_a: ZFA:0001129 ! pharyngeal pouches 2-6 relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0001135 name: neural tube namespace: zebrafish_anatomy def: "Portion of tissue that is the cavity-containing primordium of the central nervous system, developing from the neural rod in the late segmentation period." [ZFIN:ZDB-PUB-961014-576] synonym: "presumptive central nervous system" RELATED [] xref: TAO:0001135 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0000133 ! neural rod relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001136 name: hypodermis namespace: zebrafish_anatomy def: "A layer separating the inner face of the dermis from the subjacent muscle cells. It is covered on both sides by a basement membrane. It contains pigment cells." [ZFIN:ZDB-PUB-040726-12] synonym: "subcutis" EXACT [] xref: TAO:0001136 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000368 ! integument relationship: start ZFS:0000040 ! Larval:Days 14-20 [Term] id: ZFA:0001137 name: ventral tooth row namespace: zebrafish_anatomy def: "Tooth row that is the ventralmost row of teeth on ceratobranchial 5 bone." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "ventral tooth rows" EXACT PLURAL [] xref: TAO:0001137 is_a: ZFA:0001642 ! tooth row relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0001138 name: vestibuloauditory system namespace: zebrafish_anatomy def: "Sensory system responsible for the perception of spatial orientation and auditory stimuli." [GOC:ymb, ORCiD:0000-0002-9900-7880] xref: TAO:0001138 is_a: ZFA:0000282 ! sensory system relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0001139 name: mediodorsal tooth row namespace: zebrafish_anatomy def: "Tooth row that is the mediodorsal row of teeth on ceratobranchial 5 bone, located between the dorsal tooth row and ventral tooth row." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "mediodorsal tooth rows" EXACT PLURAL [] xref: TAO:0001139 is_a: ZFA:0001642 ! tooth row relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001140 name: dorsal tooth row namespace: zebrafish_anatomy def: "Tooth row that is the dorsalmost row of teeth on ceratobranchial 5 bone." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "dorsal tooth rows" EXACT PLURAL [] xref: TAO:0001140 is_a: ZFA:0001642 ! tooth row relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001141 name: tooth 1V namespace: zebrafish_anatomy def: "Ceratobranchial 5 tooth which is the anteriormost tooth in the ventral tooth row." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001141 is_a: ZFA:0005851 ! ceratobranchial 5 primary tooth relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001137 ! ventral tooth row relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001142 name: tooth 5V namespace: zebrafish_anatomy def: "Ceratobranchial 5 tooth which is the posteriormost tooth in the ventral tooth row." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001142 is_a: ZFA:0005851 ! ceratobranchial 5 primary tooth relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0001137 ! ventral tooth row relationship: start ZFS:0000035 ! Larval:Protruding-mouth [Term] id: ZFA:0001143 name: tooth 4V namespace: zebrafish_anatomy def: "Ceratobranchial 5 tooth which is posterior to tooth 3V and anterior to tooth 5V in the ventral tooth row." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001143 is_a: ZFA:0005851 ! ceratobranchial 5 primary tooth relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0001137 ! ventral tooth row relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0001144 name: tooth 2V namespace: zebrafish_anatomy def: "Ceratobranchial 5 tooth which is posterior to tooth 1V and anterior to tooth 3V in the ventral tooth row." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001144 is_a: ZFA:0005851 ! ceratobranchial 5 primary tooth relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001137 ! ventral tooth row relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001145 name: tooth 3V namespace: zebrafish_anatomy def: "Ceratobranchial 5 tooth which is posterior to tooth 2V and anterior to tooth 4V in the ventral tooth row." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001145 is_a: ZFA:0005851 ! ceratobranchial 5 primary tooth relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0001137 ! ventral tooth row relationship: start ZFS:0000035 ! Larval:Protruding-mouth [Term] id: ZFA:0001146 name: tooth 1MD namespace: zebrafish_anatomy def: "Ceratobranchial 5 tooth which is the anteriormost tooth in the mediodorsal tooth row." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001146 is_a: ZFA:0005851 ! ceratobranchial 5 primary tooth relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001139 ! mediodorsal tooth row relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001147 name: tooth 2MD namespace: zebrafish_anatomy def: "Ceratobranchial 5 tooth which is posterior to tooth 1MD and anterior to tooth 3MD in the mediodorsal tooth row." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001147 is_a: ZFA:0005851 ! ceratobranchial 5 primary tooth relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001139 ! mediodorsal tooth row relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001148 name: tooth 1D namespace: zebrafish_anatomy def: "Ceratobranchial 5 tooth which is the anteriormost tooth in the dorsal tooth row." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001148 is_a: ZFA:0005851 ! ceratobranchial 5 primary tooth relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001140 ! dorsal tooth row relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001149 name: olfactory system namespace: zebrafish_anatomy def: "Sensory system responsible for olfaction. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001149 is_a: ZFA:0000282 ! sensory system relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001150 name: tooth 2D namespace: zebrafish_anatomy def: "Ceratobranchial 5 tooth which is the posteriormost tooth in the dorsal tooth row." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001150 is_a: ZFA:0005851 ! ceratobranchial 5 primary tooth relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001140 ! dorsal tooth row relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001151 name: tooth 4MD namespace: zebrafish_anatomy def: "Ceratobranchial 5 tooth which is the posteriormost tooth in the mediodorsal tooth row." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001151 is_a: ZFA:0005851 ! ceratobranchial 5 primary tooth relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001139 ! mediodorsal tooth row relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001152 name: tooth 3MD namespace: zebrafish_anatomy def: "Ceratobranchial 5 tooth which is posterior to tooth 2MD and anterior to tooth 4MD in the mediodorsal tooth row." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001152 is_a: ZFA:0005851 ! ceratobranchial 5 primary tooth relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001139 ! mediodorsal tooth row relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001153 name: tooth placode namespace: zebrafish_anatomy def: "Placode that develops into a tooth. The placode is a thickening of the pharyngeal epithelium." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "dental primordium" EXACT [] synonym: "tooth germ" EXACT [] xref: TAO:0001153 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0001174 ! pharyngeal epithelium relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0001154 name: anal fin musculature namespace: zebrafish_anatomy def: "Musculature part of the anal fin." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] xref: TAO:0001154 is_a: ZFA:0000207 ! fin musculature relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001162 ! anal fin relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001155 name: enteric nervous system namespace: zebrafish_anatomy def: "Nervous system that is involved primarily with the internal regulation of the gustatory processes. In most vertebrates the enteric neurons form two layers of ganglionic plexuses located along the entire length of the gastrointestinal tract." [GOC:cvs, GOC:ymb, http://www.macses.ucsf.edu/research/allostatic/parasym.php, ISBN:0080923437, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] xref: TAO:0001155 is_a: ZFA:0001574 ! autonomic nervous system relationship: develops_from ZFA:0001334 ! presumptive enteric nervous system relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000112 ! gut relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0001156 name: posterior lateral line placode namespace: zebrafish_anatomy def: "Dorsolateral placode that gives rise to the posterior lateral line." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "posterior lateral line placodes" EXACT PLURAL [] xref: TAO:0001156 is_a: ZFA:0001310 ! dorsolateral placode relationship: end ZFS:0000028 ! Segmentation:26+ somites relationship: part_of ZFA:0001471 ! posterior lateral line system relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001157 name: posterior lateral line primordium namespace: zebrafish_anatomy def: "A migrating group of cells originating from the posterior lateral line placode. The primordium deposits seven to nine neuromasts and interneuromasts between them during its posterior migration to the tail." [ZFIN:ZDB-PUB-010705-16] synonym: "posterior lateral line primordia" EXACT PLURAL [] xref: TAO:0001157 is_a: ZFA:0000228 ! lateral line primordium relationship: develops_from ZFA:0001156 ! posterior lateral line placode relationship: end ZFS:0000036 ! Larval:Day 4 relationship: part_of ZFA:0001471 ! posterior lateral line system relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0001158 name: endocrine system namespace: zebrafish_anatomy def: "Anatomical system that produces, transports and secretes peptides." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] xref: TAO:0001158 is_a: ZFA:0001439 ! anatomical system relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001159 name: immune system namespace: zebrafish_anatomy def: "System that provides protection against foreign and abnormal cells and removes cellular debris." [ISBN:0314472304] xref: TAO:0001159 is_a: ZFA:0001439 ! anatomical system relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001160 name: adult namespace: zebrafish_anatomy is_obsolete: true consider: ZFS:0000044 [Term] id: ZFA:0001161 name: pectoral fin namespace: zebrafish_anatomy def: "Paired fin that is located in the thoracic region of the body." [TAO:curator] synonym: "forefin" EXACT [] synonym: "pectoral fins" EXACT PLURAL [] xref: TAO:0001161 is_a: ZFA:0005596 ! paired fin relationship: develops_from ZFA:0000141 ! pectoral fin bud relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0001162 name: anal fin namespace: zebrafish_anatomy def: "Median fin that is located posterior to the anus." [TAO:curator] xref: TAO:0001162 is_a: ZFA:0005597 ! median fin relationship: develops_from ZFA:0001069 ! ventral fin fold relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001117 ! post-vent region relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001163 name: supraneural 7 namespace: zebrafish_anatomy def: "Supraneural located between vertebra 6 and 7." [ZFIN:ZDB-PUB-031103-13] xref: TAO:0001163 is_a: ZFA:0001397 ! post-Weberian supraneural relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000040 ! Larval:Days 14-20 [Term] id: ZFA:0001164 name: supraneural 6 namespace: zebrafish_anatomy def: "Supraneural located between vertebra 5 and 6." [ZFIN:ZDB-PUB-031103-13] synonym: "sn6" EXACT [] xref: TAO:0001164 is_a: ZFA:0001397 ! post-Weberian supraneural relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000040 ! Larval:Days 14-20 [Term] id: ZFA:0001165 name: supraneural 5 namespace: zebrafish_anatomy def: "Supraneural located between vertebra 4 and 5." [ZDB:ZDB-PUB-031103-13] synonym: "sn5" EXACT [] xref: TAO:0001165 is_a: ZFA:0001397 ! post-Weberian supraneural relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000040 ! Larval:Days 14-20 [Term] id: ZFA:0001166 name: supraneural 9 namespace: zebrafish_anatomy def: "Supraneural located between vertebra 8 and 9." [ZFIN:ZDB-PUB-031103-13] xref: TAO:0001166 is_a: ZFA:0001397 ! post-Weberian supraneural relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000040 ! Larval:Days 14-20 [Term] id: ZFA:0001167 name: vertebra 1 namespace: zebrafish_anatomy def: "Vertebra that is posteriorly adjacent to the neurocranium." [TAO:curator] synonym: "cervical vertebra 1" EXACT [] xref: TAO:0001167 is_a: ZFA:0001190 ! Weberian vertebra relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0001168 name: vertebra 2 namespace: zebrafish_anatomy def: "Vertebra that is posteriorly adjacent to vertebra 1." [TAO:curator] synonym: "cervical vertebra 2" EXACT [] xref: TAO:0001168 is_a: ZFA:0001190 ! Weberian vertebra relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0001169 name: vertebra 3 namespace: zebrafish_anatomy def: "Vertebra that is posteriorly adjacent to vertebra 2." [TAO:curator] xref: TAO:0001169 is_a: ZFA:0001190 ! Weberian vertebra relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0001170 name: vertebra 4 namespace: zebrafish_anatomy def: "Vertebra that is posteriorly adjacent to vertebra 3." [TAO:curator] xref: TAO:0001170 is_a: ZFA:0001190 ! Weberian vertebra relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0001171 name: os suspensorium namespace: zebrafish_anatomy def: "Thin, rod-shaped, anteroventrally directed membrane bone that develops as a separate outgrowth from the cartilage parapophysis of the fourth vertebra; develops ventrally to curve around the anterior head of the swim bladder. It articulates with the tripus at the tripus-swim bladder connection. Often termed a fifth Weberian ossicle." [ZFIN:ZDB-PUB-031103-13] comment: The os suspensorium is similar in shape to a rib, but the other ribs in Danio develop as separate ossifications that grow toward and articulate with the parapophyses. xref: TAO:0001171 is_a: ZFA:0001591 ! endochondral bone is_a: ZFA:0001636 ! membrane bone relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000461 ! Weberian ossicle relationship: part_of ZFA:0001170 ! vertebra 4 relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0001172 name: roofing cartilage namespace: zebrafish_anatomy def: "Cartilaginous larval structure dorsal to the four anterior-most vertebrae, which forms the connection between neural arches and supraneurals in the Weberian apparatus. Located dorsal to the neural tube." [ZFIN:ZDB-PUB-031103-13] xref: TAO:0001172 is_a: ZFA:0001457 ! postcranial axial cartilage relationship: end ZFS:0000041 ! Larval:Days 21-29 relationship: part_of ZFA:0001191 ! supraneural 2 relationship: part_of ZFA:0001192 ! supraneural 3 relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0001173 name: dorsal fin namespace: zebrafish_anatomy def: "Median fin that is located on the dorsal surface of the fish." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0001173 is_a: ZFA:0005597 ! median fin relationship: develops_from ZFA:0000102 ! dorsal fin fold relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001174 name: pharyngeal epithelium namespace: zebrafish_anatomy def: "Epithelium lining the pharynx consisting largely of simple columnar epithelium with a short segment (1mm) of stratified squamous epithelium on the ventral side." [ZFIN:ZDB-PUB-070426-1] xref: TAO:0001174 is_a: ZFA:0001495 ! unilaminar epithelium relationship: develops_from ZFA:0001104 ! pharyngeal endoderm relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000056 ! pharynx relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0001175 name: blastodisc namespace: zebrafish_anatomy def: "Embryonic structure that is the dome of cytoplasm that segregates from the yolk toward the animal pole during and after the one cell-stage, and which undergoes cleavage." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576] xref: TAO:0001175 is_a: ZFA:0001105 ! embryonic structure relationship: end ZFS:0000015 ! Blastula:Dome relationship: start ZFS:0000001 ! Zygote:1-cell [Term] id: ZFA:0001176 name: blastoderm namespace: zebrafish_anatomy def: "Embryonic structure that is composed of the cellular part of the embryo, excluding the yolk cell, derived from the blastodisc by early morphogenesis; refers particularly to the time when the cell array is sheet-like, between 30%-epiboly and the end of gastrulation." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576] xref: TAO:0001176 is_a: ZFA:0001105 ! embryonic structure relationship: develops_from ZFA:0001175 ! blastodisc relationship: end ZFS:0000022 ! Gastrula:Bud relationship: start ZFS:0000016 ! Blastula:30%-epiboly [Term] id: ZFA:0001177 name: roof plate spinal cord region namespace: zebrafish_anatomy xref: TAO:0001177 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0000075 ! spinal cord relationship: part_of ZFA:0007058 ! roof plate relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001178 name: non neural ectoderm namespace: zebrafish_anatomy synonym: "ventral ectoderm" EXACT [] xref: TAO:0001178 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000027 ! Segmentation:20-25 somites relationship: part_of ZFA:0000016 ! ectoderm relationship: start ZFS:0000020 ! Gastrula:75%-epiboly [Term] id: ZFA:0001179 name: epidermal superficial stratum namespace: zebrafish_anatomy def: "The outer layer of the epidermis. The living cells form single cell layer, the outer surface of which is ornamented with microridges. These outer epidermal cells are not renewed periodically, but are individually replaced when dead." [ZFIN:ZDB-PUB-040726-12] xref: TAO:0001179 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0001185 ! periderm relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000105 ! epidermis relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001180 name: epidermal basal stratum namespace: zebrafish_anatomy def: "Lower layer of the epidermis. Composed of a single layer of cells. The major function of the basal stratum is to keep the epidermis attached to the underlying dermis by means of (hemidesmosomes attached to the basement membrane." [ZFIN:ZDB-PUB-040726-12] synonym: "basal epidermal layer" EXACT [] xref: TAO:0001180 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000105 ! epidermis relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001181 name: epidermal intermediate stratum namespace: zebrafish_anatomy def: "The tissue which lies between the basal stratum and the superficial stratum. This layer is composed of a variable number of cell layers which contain mucous goblet cells, club cells and sensory cells. Most of the cells of this region are undifferentiated. They serve as a reservoir to replace dead cells in any of the epidermis regions." [ZFIN:ZDB-PUB-040726-12] xref: TAO:0001181 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000105 ! epidermis relationship: start ZFS:0000041 ! Larval:Days 21-29 [Term] id: ZFA:0001182 name: dermal deep region namespace: zebrafish_anatomy def: "Portion of the dermis characterized by a well-arranged, plywood-like, collagenous network." [ZFIN:ZDB-PUB-040726-12] synonym: "stratum compactum" EXACT [] xref: TAO:0001182 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0001186 ! collagenous dermal stroma relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001119 ! dermis relationship: start ZFS:0000041 ! Larval:Days 21-29 [Term] id: ZFA:0001183 name: dermal superficial region namespace: zebrafish_anatomy def: "Outer portion of the dermis composed of a loose collagenous matrix housing numerous fibroblasts, nerves, some pigment cells, and scales. Scale development takes place in this layer of the dermis." [ZFIN:ZDB-PUB-040726-12] synonym: "stratum laxum" EXACT [] xref: TAO:0001183 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001119 ! dermis relationship: start ZFS:0000042 ! Juvenile:Days 30-44 [Term] id: ZFA:0001184 name: pelvic fin namespace: zebrafish_anatomy def: "Paired fin located in the abdominal position of the body." [TAO:curator] synonym: "pelvic fins" EXACT PLURAL [] xref: TAO:0001184 is_a: ZFA:0005596 ! paired fin relationship: develops_from ZFA:0001384 ! pelvic fin bud relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000042 ! Juvenile:Days 30-44 [Term] id: ZFA:0001185 name: periderm namespace: zebrafish_anatomy def: "The outermost epidermal layer covering the fish at embryonic stages; derived from the EVL and thought to eventually be replaced by the superficial stratum of the epidermis. Sometimes used synonymously with EVL." [ZFIN:ZDB-PUB-040726-12] synonym: "EVL" RELATED [] xref: TAO:0001185 is_a: ZFA:0001486 ! epithelium relationship: develops_from ZFA:0000086 ! EVL relationship: end ZFS:0000028 ! Segmentation:26+ somites relationship: part_of ZFA:0000016 ! ectoderm relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0001186 name: collagenous dermal stroma namespace: zebrafish_anatomy def: "Acellular anatomical structure that is a layer of collagen fibrils in the immature integument in a subepidermal space. At first, the fibrils are all oriented in the same direction, later they form the complex plywood-like structure that is characteristic of the dermal deep region." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-040726-12] synonym: "primary dermal stroma" EXACT [] xref: TAO:0001186 is_a: ZFA:0000382 ! acellular anatomical structure relationship: end ZFS:0000041 ! Larval:Days 21-29 relationship: part_of ZFA:0001119 ! dermis relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001187 name: presumptive midbrain hindbrain boundary namespace: zebrafish_anatomy def: "Embryonic structure that gives rise to the midbrain hindbrain boundary." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "presumptive midbrain-hindbrain boundary" EXACT [] xref: TAO:0001187 is_a: ZFA:0001105 ! embryonic structure relationship: end ZFS:0000020 ! Gastrula:75%-epiboly relationship: part_of ZFA:0000146 ! presumptive brain relationship: start ZFS:0000020 ! Gastrula:75%-epiboly [Term] id: ZFA:0001188 name: Weberian apparatus namespace: zebrafish_anatomy def: "The Weberian apparatus consists of the modified anteriormost four vertebrae and associated structures of otophysans which transduce sound or pressure waves from the tunica externa of the swim bladder to the inner ear (Alexander, 1962)." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001188 is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001559 ! vertebral column relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0001189 name: vertebra namespace: zebrafish_anatomy def: "All serially repeated ossified, cartilaginous, and ligamentous elements around the notochord (Schultze and Arratia, 1988). Adult zebrafish usually 32 vertebrae but may have as few as 30 to as many as 33 vertebrae." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-020807-1] synonym: "vertebrae" EXACT PLURAL [] xref: TAO:0001189 is_a: ZFA:0001591 ! endochondral bone relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001559 ! vertebral column relationship: start ZFS:0000035 ! Larval:Protruding-mouth [Term] id: ZFA:0001190 name: Weberian vertebra namespace: zebrafish_anatomy def: "The first four vertebrae, which are part of the Weberian apparatus." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "Weberian vertebrae" EXACT PLURAL [] xref: TAO:0001190 is_a: ZFA:0000263 ! precaudal vertebra relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001188 ! Weberian apparatus relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0001191 name: supraneural 2 namespace: zebrafish_anatomy def: "Supraneural 2 is an ovoid cartilage or cartilage replacement bone located above centrum 2. It forms an immovable joint with supraneural 3 and contributes to the neural complex roofing the neural canal." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "small supraneural" EXACT [] synonym: "sn2" EXACT [] xref: TAO:0001191 is_a: ZFA:0000442 ! supraneural relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001363 ! neural complex relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0001192 name: supraneural 3 namespace: zebrafish_anatomy def: "Supraneural 3 is an elongated cartilage or cartilage replacement bone above vertebrae 3 and 4, developmentally fusing with NA 3 and 4. A crest or blade of membrane bone forms from its dorsal surface." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "large supraneural" EXACT [] synonym: "sn3" EXACT [] xref: TAO:0001192 is_a: ZFA:0000442 ! supraneural relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001363 ! neural complex relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0001193 name: supraneural 8 namespace: zebrafish_anatomy def: "Supraneural located between vertebra 7 and 8." [ZFIN:ZDB-PUB-031103-13] xref: TAO:0001193 is_a: ZFA:0001397 ! post-Weberian supraneural relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000040 ! Larval:Days 14-20 [Term] id: ZFA:0001194 name: cranial neural crest namespace: zebrafish_anatomy def: "Neural crest that is part of the head." [GOC:ymb, ORCiD:0000-0002-9900-7880] xref: TAO:0001194 is_a: ZFA:0000045 ! neural crest relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0001195 name: pars anterior namespace: zebrafish_anatomy def: "The anterior portion of the adenohypophysis. Comprised of the proximal and rostral pars anterior." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "pars distalis" EXACT [] xref: TAO:0001195 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001282 ! adenohypophysis relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001196 name: pars tuberalis namespace: zebrafish_anatomy comment: This structure does not exist in Zebrafish. Consider proximal pars anterior ZFA:0005581. xref: TAO:0001196 is_obsolete: true [Term] id: ZFA:0001197 name: pars intermedia namespace: zebrafish_anatomy def: "Caudal portion of the adenohypophysis." [ZFIN:ZDB-PUB-080616-4] xref: TAO:0001197 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001282 ! adenohypophysis relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001198 name: adenohypophyseal placode namespace: zebrafish_anatomy def: "Portion of tissue that gives rise to the adenohypophysis." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "pituitary placode" EXACT [] xref: TAO:0001198 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0001178 ! non neural ectoderm relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001199 name: infundibulum namespace: zebrafish_anatomy def: "Brain structure which is a short stalk connecting the neurohypophysis with the brain. Axons of secretory cells in the floor of the diencephalon traverse the infundibulum and terminate in the neurohypophysis." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "hypophysial stalk" EXACT [] synonym: "infundibulum of hypothalamus" EXACT [] synonym: "pituitary stalk" EXACT [] xref: TAO:0001199 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001271 ! neurohypophysis relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001200 name: corpuscles of Stannius namespace: zebrafish_anatomy def: "Islands of eosinic cells found on the lateroventral surface of the kidney. Function is thought to be that of the parathyroid gland in other vertebrates, which are lacking in fishes. These cells secrete hypocalcin (teleocalcin) to regulate calcium metabolism." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0001200 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0001201 name: ventral lateral mesoderm namespace: zebrafish_anatomy xref: TAO:0001201 is_a: ZFA:0000041 ! mesoderm relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0000083 ! ventral mesoderm relationship: start ZFS:0000021 ! Gastrula:90%-epiboly [Term] id: ZFA:0001202 name: optic cup namespace: zebrafish_anatomy def: "Multi-tissue structure that is comprised of neural and non-neural epithelial layers which will form the retina and retinal pigmented epithelium of the mature eye." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "eye cup" EXACT [] xref: TAO:0001202 is_a: ZFA:0001488 ! multi-tissue structure relationship: develops_from ZFA:0000050 ! optic vesicle relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0001678 ! immature eye relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0001203 name: ciliary zone namespace: zebrafish_anatomy def: "Multi-tissue structure that attach the zonules, that suspend the lens, to the eye. The ciliary zone secretes aqueous humor. Unlike mammals zebrafish the ciliary zone dose not contain processes or a circumferential band of muscle." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-050701-15] comment: May need to obsolete this term, ZDB-PUB-050701-15.\n\nThe ciliary "body" does not contain processes or a cumferential band of muscle. For this reason, we refer to the region adjacent and posterior to the iris as the ciliary zone, and not the ciliary body. The ciliary zone, however, is expanded and has a morphology consistent with contraction in a small area of the ventral-most region. synonym: "ciliary bodies" RELATED PLURAL [] synonym: "ciliary body" RELATED [] synonym: "ciliary epithelial zone" EXACT [] xref: TAO:0001203 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005566 ! anterior segment eye relationship: start ZFS:0000042 ! Juvenile:Days 30-44 [Term] id: ZFA:0001204 name: axial mesoderm namespace: zebrafish_anatomy xref: TAO:0001204 is_a: ZFA:0000041 ! mesoderm relationship: develops_from ZFA:0001378 ! axial hypoblast relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: start ZFS:0000020 ! Gastrula:75%-epiboly [Term] id: ZFA:0001205 name: Meckel's cartilage namespace: zebrafish_anatomy def: "Meckel's cartilage is the bilaterally paired, rod-like, cartilaginous ventral component of the lower jaw, or ventral mandibular arch. It is typically resorbed in adults." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "ventral mandibular cartilage" EXACT [] xref: TAO:0001205 is_a: ZFA:0001460 ! pharyngeal arch cartilage relationship: end ZFS:0000044 ! Adult relationship: overlaps ZFA:0007117 ! Meckel's cartilage-palatoquadrate cartilage joint relationship: part_of ZFA:0001273 ! ventral mandibular arch relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0001206 name: intermediate mesoderm namespace: zebrafish_anatomy synonym: "IM" EXACT [] xref: TAO:0001206 is_a: ZFA:0000041 ! mesoderm relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0001207 name: presumptive rhombomere 1 namespace: zebrafish_anatomy def: "Embryonic structure, part of the neural keel, that gives rise to rhombomere 1." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001207 is_a: ZFA:0001105 ! embryonic structure relationship: end ZFS:0000024 ! Segmentation:5-9 somites relationship: part_of ZFA:0007029 ! hindbrain neural keel relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0001208 name: presumptive rhombomere 2 namespace: zebrafish_anatomy def: "Embryonic structure, part of the neural keel, that gives rise to rhombomere 2." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001208 is_a: ZFA:0001105 ! embryonic structure relationship: end ZFS:0000024 ! Segmentation:5-9 somites relationship: part_of ZFA:0007029 ! hindbrain neural keel relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0001209 name: presumptive rhombomere 7 namespace: zebrafish_anatomy def: "Embryonic structure, part of the neural keel, that gives rise to rhombomere 7." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001209 is_a: ZFA:0001105 ! embryonic structure relationship: end ZFS:0000024 ! Segmentation:5-9 somites relationship: part_of ZFA:0007029 ! hindbrain neural keel relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0001210 name: presumptive rhombomere 6 namespace: zebrafish_anatomy def: "Embryonic structure, part of the neural keel, that gives rise to rhombomere 6." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001210 is_a: ZFA:0001105 ! embryonic structure relationship: end ZFS:0000024 ! Segmentation:5-9 somites relationship: part_of ZFA:0007029 ! hindbrain neural keel relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0001211 name: presumptive rhombomere 5 namespace: zebrafish_anatomy def: "Embryonic structure, part of the neural keel, that gives rise to rhombomere 5." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001211 is_a: ZFA:0001105 ! embryonic structure relationship: end ZFS:0000024 ! Segmentation:5-9 somites relationship: part_of ZFA:0007029 ! hindbrain neural keel relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0001212 name: presumptive rhombomere 4 namespace: zebrafish_anatomy def: "Embryonic structure, part of the neural keel, that gives rise to rhombomere 4." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001212 is_a: ZFA:0001105 ! embryonic structure relationship: end ZFS:0000024 ! Segmentation:5-9 somites relationship: part_of ZFA:0007029 ! hindbrain neural keel relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0001213 name: presumptive rhombomere 3 namespace: zebrafish_anatomy def: "Embryonic structure, part of the neural keel, that gives rise to rhombomere 3." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001213 is_a: ZFA:0001105 ! embryonic structure relationship: end ZFS:0000024 ! Segmentation:5-9 somites relationship: part_of ZFA:0007029 ! hindbrain neural keel relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0001214 name: presumptive rhombomere 8 namespace: zebrafish_anatomy def: "Embryonic structure, part of the neural keel, that gives rise to rhombomere 8." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001214 is_a: ZFA:0001105 ! embryonic structure relationship: end ZFS:0000024 ! Segmentation:5-9 somites relationship: part_of ZFA:0007029 ! hindbrain neural keel relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0001215 name: thalamus namespace: zebrafish_anatomy def: "Multi-tissue structure that is paired, and is situated one on either side of and forming part of the lateral wall of the third ventricle." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "thalami" EXACT PLURAL [] xref: TAO:0001215 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000101 ! diencephalon relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001216 name: splanchnocranium namespace: zebrafish_anatomy def: "Anatomical cluster that is the regional skeletal system of the jaws, hyoid and branchial arches." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "pharyngeal arch skeleton" EXACT [] synonym: "pharyngeal skeleton" EXACT [] xref: TAO:0001216 is_a: ZFA:0001478 ! anatomical cluster relationship: develops_from ZFA:0005771 ! ectomesenchyme relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000737 ! cranium relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001217 name: presumptive hypochord namespace: zebrafish_anatomy def: "Tissue along the lateral edges of the shield that is fated to develop into the hypochord." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001217 is_a: ZFA:0001116 ! presumptive structure relationship: end ZFS:0000024 ! Segmentation:5-9 somites relationship: start ZFS:0000020 ! Gastrula:75%-epiboly [Term] id: ZFA:0001218 name: presumptive floor plate namespace: zebrafish_anatomy def: "Embryonic structure, the part of the neural plate fated to become floor plate." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001218 is_a: ZFA:0001105 ! embryonic structure relationship: end ZFS:0000023 ! Segmentation:1-4 somites relationship: part_of ZFA:0000132 ! neural plate relationship: start ZFS:0000020 ! Gastrula:75%-epiboly [Term] id: ZFA:0001220 name: copula namespace: zebrafish_anatomy def: "Pharyngeal arch cartilage that is ventral, median, and associated with more than one pharyngeal arch in the pharyngeal arch 3-7 skeleton. The copulae are the precursors of the basibranchials." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "copulae" EXACT PLURAL [] xref: TAO:0001220 is_a: ZFA:0001460 ! pharyngeal arch cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000095 ! pharyngeal arch 3-7 skeleton relationship: start ZFS:0000032 ! Pharyngula:High-pec [Term] id: ZFA:0001221 name: copula 1 namespace: zebrafish_anatomy def: "Copula that is ventral, median, and associated with pharyngeal arches 3-5. A long slender cartilage extending along the midline from the posterior tip of the basihyal to between the third hypobranchials." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "anterior copula" EXACT [] xref: TAO:0001221 is_a: ZFA:0001220 ! copula relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000032 ! Pharyngula:High-pec [Term] id: ZFA:0001222 name: copula 2 namespace: zebrafish_anatomy def: "Copula that is ventral, median, and associated with pharyngeal arches 6-7. A cartilage extending from the posterior tip of copula 1 to the anterior tips of the fifth ceratobranchials." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "posterior copula" EXACT [] xref: TAO:0001222 is_a: ZFA:0001220 ! copula relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0001223 name: basibranchial 1 namespace: zebrafish_anatomy def: "Basibranchial 1 ossifies posterior to the basihyal and anterior to the first hypobranchials in copula 1 (7.6 mm)." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001223 is_a: ZFA:0000170 ! basibranchial relationship: develops_from ZFA:0001221 ! copula 1 relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000040 ! Larval:Days 14-20 [Term] id: ZFA:0001224 name: basibranchial 2 namespace: zebrafish_anatomy def: "Basibranchial 2 ossifies in copula 1 posterior to the first hypobranchials and anterior to the second hypobranchials (6.8 mm). It is the first of the three basibranchials to ossify." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001224 is_a: ZFA:0000170 ! basibranchial relationship: develops_from ZFA:0001221 ! copula 1 relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000040 ! Larval:Days 14-20 [Term] id: ZFA:0001225 name: basibranchial 3 namespace: zebrafish_anatomy def: "Basibranchial 3 ossifies in copula 1 posterior to the second hypobranchials, anterior to the third hypobranchials (7.6 mm) and associated with pharyngeal arch 5. Cartilage pads, remnants of copula 1, remain between adjacent basibranchials in the adult." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001225 is_a: ZFA:0000170 ! basibranchial relationship: develops_from ZFA:0001221 ! copula 1 relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000040 ! Larval:Days 14-20 [Term] id: ZFA:0001226 name: basibranchial 4 namespace: zebrafish_anatomy def: "Occasionally, a fourth basibranchial ossifies in the narrow copula 2 cartilage, which lies posterior to the third basibranchial and anterior to the anteromedial articulation of the fifth ceratobranchials." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001226 is_a: ZFA:0000170 ! basibranchial relationship: develops_from ZFA:0001222 ! copula 2 relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000041 ! Larval:Days 21-29 [Term] id: ZFA:0001227 name: mandibular arch skeleton namespace: zebrafish_anatomy def: "Skeletal and cartilaginous elements of the first pharyngeal arch." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "jaw" EXACT [] synonym: "jaw cartilage" EXACT [] synonym: "jaws" EXACT PLURAL [] synonym: "oral jaw skeleton" EXACT [] synonym: "pharyngeal arch 1 skeleton" EXACT [] xref: TAO:0001227 is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001216 ! splanchnocranium relationship: part_of ZFA:0001612 ! pharyngeal arch 1 relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001228 name: pharyngeal arch 3 skeleton namespace: zebrafish_anatomy def: "Anatomical cluster made up of skeletal and cartilaginous elements of the third pharyngeal arch, also called first gill or branchial arch." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "branchial arch 1 skeleton" EXACT [] synonym: "gill arch 1 skeleton" EXACT [] synonym: "visceral arch 3 skeleton" EXACT [] xref: TAO:0001228 is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000095 ! pharyngeal arch 3-7 skeleton relationship: part_of ZFA:0001606 ! pharyngeal arch 3 relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001229 name: pharyngeal arch 7 skeleton namespace: zebrafish_anatomy def: "Anatomical cluster made up of skeletal and cartilaginous elements of the seventh pharyngeal arch, also called fifth gill or branchial arch." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "branchial arch 5 skeleton" EXACT [] synonym: "gill arch 5 skeleton" EXACT [] synonym: "visceral arch 7 skeleton" EXACT [] xref: TAO:0001229 is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000095 ! pharyngeal arch 3-7 skeleton relationship: part_of ZFA:0001610 ! pharyngeal arch 7 relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001230 name: pharyngeal arch 6 skeleton namespace: zebrafish_anatomy def: "Anatomical cluster made up of skeletal and cartilaginous elements of the sixth pharyngeal arch, also called fourth gill or branchial arch." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "branchial arch 4 skeleton" EXACT [] synonym: "gill arch 4 skeleton" EXACT [] synonym: "visceral arch 6 skeleton" EXACT [] xref: TAO:0001230 is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000095 ! pharyngeal arch 3-7 skeleton relationship: part_of ZFA:0001609 ! pharyngeal arch 6 relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001231 name: pharyngeal arch 4 skeleton namespace: zebrafish_anatomy def: "Anatomical cluster made up of skeletal and cartilaginous elements of the fourth pharyngeal arch, also called second gill or branchial arch." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "branchial arch 2 skeleton" EXACT [] synonym: "gill arch 2 skeleton" EXACT [] synonym: "visceral arch 4 skeleton" EXACT [] xref: TAO:0001231 is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000095 ! pharyngeal arch 3-7 skeleton relationship: part_of ZFA:0001607 ! pharyngeal arch 4 relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001232 name: pharyngeal arch 5 skeleton namespace: zebrafish_anatomy def: "Anatomical cluster made up of skeletal and cartilaginous elements of the fifth pharyngeal arch, also called third gill or branchial arch." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "branchial arch 3 skeleton" EXACT [] synonym: "gill arch 3 skeleton" EXACT [] synonym: "visceral arch 5 skeleton" EXACT [] xref: TAO:0001232 is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000095 ! pharyngeal arch 3-7 skeleton relationship: part_of ZFA:0001608 ! pharyngeal arch 5 relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001233 name: hypobranchial 1 bone namespace: zebrafish_anatomy def: "Hypobranchial ossifications 1-3 develop in the small hypobranchial cartilages that lie between the medial tips of the ceratobranchials and copula 1. The first and second hypobranchials are small and irregular in shape; one or both ossifications are absent in some adults." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "hypobranchial 1 bones" EXACT PLURAL [] xref: TAO:0001233 is_a: ZFA:0000363 ! hypobranchial bone relationship: develops_from ZFA:0001524 ! hypobranchial 1 cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001228 ! pharyngeal arch 3 skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001234 name: hypobranchial 4 bone namespace: zebrafish_anatomy def: "Tiny hypobranchial4 cartilages appear at anteromedial tips of ceratobranchial 4; these are not obviously present in mature specimens, due either to resorption or fusion to the cartilaginous anterior tip of ceratobranchial." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "hypobranchial 4 bones" EXACT PLURAL [] xref: TAO:0001234 is_a: ZFA:0000363 ! hypobranchial bone relationship: develops_from ZFA:0001523 ! hypobranchial 4 cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001230 ! pharyngeal arch 6 skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001235 name: hypobranchial 3 bone namespace: zebrafish_anatomy def: "Hypobranchial ossifications 1-3 develop in the small hypobranchial cartilages that lie between the medial tips of the ceratobranchials and copula 1. The first and second hypobranchials are small and irregular in shape; one or both ossifications are absent in some adults." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "hypobranchial 3 bones" EXACT PLURAL [] xref: TAO:0001235 is_a: ZFA:0000363 ! hypobranchial bone relationship: develops_from ZFA:0001526 ! hypobranchial 3 cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001232 ! pharyngeal arch 5 skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001236 name: hypobranchial 2 bone namespace: zebrafish_anatomy def: "Hypobranchial ossifications 1-3 develop in the small hypobranchial cartilages that lie between the medial tips of the ceratobranchials and copula 1. The first and second hypobranchials are small and irregular in shape; one or both ossifications are absent in some adults." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "hypobranchial 2 bones" EXACT PLURAL [] xref: TAO:0001236 is_a: ZFA:0000363 ! hypobranchial bone relationship: develops_from ZFA:0001525 ! hypobranchial 2 cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001231 ! pharyngeal arch 4 skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001237 name: ceratobranchial 1 bone namespace: zebrafish_anatomy def: "Ceratobranchial bone that is bilaterally paired and articulates laterally with epibranchial 1 cartilage or bone and medially with the cartilage between the basibranchials. Gill rakers are present on the anterior and posterior margins." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001237 is_a: ZFA:0000488 ! ceratobranchial bone relationship: develops_from ZFA:0001520 ! ceratobranchial 1 cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001228 ! pharyngeal arch 3 skeleton relationship: start ZFS:0000040 ! Larval:Days 14-20 [Term] id: ZFA:0001238 name: iris namespace: zebrafish_anatomy def: "Multi-tissue structure that consists of pigmented stroma and is connected to a sphincter muscle and a dilator muscle which open and close the pupil located in the center of the iris." [GOC:mh, http://www.encyclopedia.thefreedictionary.com/Iris+(anatomy), ORCiD:0000-0001-9114-8737] synonym: "irises" EXACT PLURAL [] xref: TAO:0001238 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005566 ! anterior segment eye relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001239 name: ceratobranchial 5 bone namespace: zebrafish_anatomy def: "Ceratobranchial bone that is the most posterior, bilaterally paired ventral pharyngeal arch bone. Ceratobranchial 5 ossifies before ceratobranchials 1-4. In the adult, ceratobranchial 5 is heavily ossified and crescent-shaped with two to three rows of posteromedially directed teeth. The anteroventral tips of ceratobranchials 5 meet medially and are ligamentously joined." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001239 is_a: ZFA:0000488 ! ceratobranchial bone relationship: develops_from ZFA:0001521 ! ceratobranchial 5 cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001229 ! pharyngeal arch 7 skeleton relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0001240 name: ceratobranchial 4 bone namespace: zebrafish_anatomy def: "Ceratobranchial bone that is bilaterally paired and articulates laterally with epibranchial 4 cartilage or bone and medially with copula 2. Gill rakers are present on the anterior and posterior margins." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001240 is_a: ZFA:0000488 ! ceratobranchial bone relationship: develops_from ZFA:0001519 ! ceratobranchial 4 cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001230 ! pharyngeal arch 6 skeleton relationship: start ZFS:0000040 ! Larval:Days 14-20 [Term] id: ZFA:0001241 name: ceratobranchial 3 bone namespace: zebrafish_anatomy def: "Ceratobranchial bone that is bilaterally paired and articulates laterally with epibranchial 3 cartilage or bone and medially with the cartilage between the basibranchials. Gill rakers are present on the anterior and posterior margins." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001241 is_a: ZFA:0000488 ! ceratobranchial bone relationship: develops_from ZFA:0001518 ! ceratobranchial 3 cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001232 ! pharyngeal arch 5 skeleton relationship: start ZFS:0000040 ! Larval:Days 14-20 [Term] id: ZFA:0001242 name: ceratobranchial 2 bone namespace: zebrafish_anatomy def: "Ceratobranchial bone that is bilaterally paired and articulates laterally with epibranchial 2 cartilage or bone and medially with the cartilage between the basibranchials. Gill rakers are present on the anterior and posterior margins." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001242 is_a: ZFA:0000488 ! ceratobranchial bone relationship: develops_from ZFA:0001517 ! ceratobranchial 2 cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001231 ! pharyngeal arch 4 skeleton relationship: start ZFS:0000040 ! Larval:Days 14-20 [Term] id: ZFA:0001243 name: epibranchial 1 bone namespace: zebrafish_anatomy def: "Epibranchial bone that is bilaterally paired and articulates laterally with ceratobranchial 1 cartilage or bone. The narrowed medial end of epibranchial 1 articulates through cartilage with pharyngobranchial 1." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001243 is_a: ZFA:0000658 ! epibranchial bone relationship: develops_from ZFA:0001528 ! epibranchial 1 cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001228 ! pharyngeal arch 3 skeleton relationship: start ZFS:0000041 ! Larval:Days 21-29 [Term] id: ZFA:0001244 name: epibranchial 5 namespace: zebrafish_anatomy def: "Epibranchial cartilage that is bilaterally paired and appears as a separate center of chondrification (6.2 mm) posterior to the lateral tip of epibranchial 4 and immediately anterior to the upper end of ceratobranchial 5. In the adult, epibranchial 5 persists as a small, cartilaginous rod extending from the cartilaginous junction of the posterodorsal tip of the uncinate process of epibranchial 4 and tip of ceratobranchial 5, to the cartilaginous junction of ceratobranchial 4 and epibranchial 4." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "interbranchial IV" EXACT [] xref: TAO:0001244 is_a: ZFA:0001527 ! epibranchial cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001229 ! pharyngeal arch 7 skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001245 name: epibranchial 4 bone namespace: zebrafish_anatomy def: "Epibranchial bone that is bilaterally paired and articulates laterally with ceratobranchial 4 cartilage or bone. The narrow end of epibranchial 4 is slightly flared, and it articulates with cartilaginous pharyngobranchial 4." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001245 is_a: ZFA:0000658 ! epibranchial bone relationship: develops_from ZFA:0001531 ! epibranchial 4 cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001230 ! pharyngeal arch 6 skeleton relationship: start ZFS:0000040 ! Larval:Days 14-20 [Term] id: ZFA:0001246 name: epibranchial 2 bone namespace: zebrafish_anatomy def: "Epibranchial bone that is bilaterally paired and articulates laterally with ceratobranchial 2 cartilage or bone. The flared medial end of epibranchial 2 articulates with bifurcate lateral projections from pharyngobranchial 1." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001246 is_a: ZFA:0000658 ! epibranchial bone relationship: develops_from ZFA:0001530 ! epibranchial 2 cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001231 ! pharyngeal arch 4 skeleton relationship: start ZFS:0000041 ! Larval:Days 21-29 [Term] id: ZFA:0001247 name: epibranchial 3 bone namespace: zebrafish_anatomy def: "Epibranchial bone that is bilaterally paired and articulates laterally with ceratobranchial 3 cartilage or bone. The flared medial end of epibranchial3 articulates with the posterolateral edge of pharyngobranchial2 + 3." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "infrapharyngobranchial 3" EXACT [] xref: TAO:0001247 is_a: ZFA:0000658 ! epibranchial bone relationship: develops_from ZFA:0001529 ! epibranchial 3 cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001232 ! pharyngeal arch 5 skeleton relationship: start ZFS:0000040 ! Larval:Days 14-20 [Term] id: ZFA:0001248 name: pharyngobranchial 1 namespace: zebrafish_anatomy is_obsolete: true consider: ZFA:0001223 [Term] id: ZFA:0001249 name: exocrine pancreas namespace: zebrafish_anatomy def: "The exocrine pancreas is a diffuse organ composed of a branching network of ducts and associated acinar glands that manufacture the proteolytic enzymes and bicarbonate required for digestion." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-050623-3] synonym: "head pancreas" RELATED [ZFIN:ZDB-PUB-080922-7] synonym: "rostral pancreas" RELATED [ZFIN:ZDB-PUB-050623-3.] xref: TAO:0001249 is_a: ZFA:0001488 ! multi-tissue structure relationship: develops_from ZFA:0001369 ! anterior pancreatic bud relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000140 ! pancreas relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0001250 name: pharyngobranchial 2 bone namespace: zebrafish_anatomy def: "Pharyngobranchial 2 (misidentified as pharyngobranchial 1 in Cubbage & Mabee, 1993 and Mayden 1989) is present and separate from pharyngobranchial 3. It (8.0 mm) ossifies after pharyngobranchial 3. In the adult, the cartilaginous anterior end of the ossified pharyngobranchial 2 articulates with the cartilaginous medial tip of epibranchial 1. It articulates anterolaterally and posterolaterally with the anterior and posterior cartilaginous tips of epibranchial2. In Cyprinidae pb3 overlaps pb2 (Siebert, 1987; Cavender & Coburn, 1992) but does not fuse to it." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "infrapharyngobranchial 2" EXACT [] xref: TAO:0001250 is_a: ZFA:0000527 ! pharyngobranchial bone relationship: develops_from ZFA:0001536 ! pharyngobranchial 2 cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001231 ! pharyngeal arch 4 skeleton relationship: start ZFS:0000042 ! Juvenile:Days 30-44 [Term] id: ZFA:0001251 name: pharyngobranchial 4 cartilage namespace: zebrafish_anatomy def: "Pharyngobranchial cartilage which forms in close proximity to or fused with pharyngobranchial 3; may not be distinguishable as a separate element in the adult. Remains cartilaginous." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-192] synonym: "infrapharyngobranchial 4 cartilage" EXACT [] synonym: "infrapharyngobranchials" EXACT [] xref: TAO:0001251 is_a: ZFA:0001533 ! pharyngobranchial cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001230 ! pharyngeal arch 6 skeleton relationship: start ZFS:0000040 ! Larval:Days 14-20 [Term] id: ZFA:0001252 name: pharyngobranchial 3 bone namespace: zebrafish_anatomy def: "Pharyngobranchial bone of the fifth pharyngeal arch that lies approximately posteromedial to epibranchial 2 and medial to epibranchial 3." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "pharyngobranchial 3 bones" EXACT PLURAL [] xref: TAO:0001252 is_a: ZFA:0000527 ! pharyngobranchial bone relationship: develops_from ZFA:0001534 ! pharyngobranchial 3 cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001232 ! pharyngeal arch 5 skeleton relationship: start ZFS:0000041 ! Larval:Days 21-29 [Term] id: ZFA:0001253 name: pharyngobranchial 2+3 namespace: zebrafish_anatomy is_obsolete: true consider: ZFA:0001224 consider: ZFA:0001225 [Term] id: ZFA:0001254 name: cranial motoneurons namespace: zebrafish_anatomy is_obsolete: true [Term] id: ZFA:0001256 name: lateral floor plate namespace: zebrafish_anatomy def: "Portion of tissue that is the lateral part of the floor plate." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001256 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0000022 ! floor plate relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0001257 name: medial floor plate namespace: zebrafish_anatomy def: "Portion of tissue that is the medial part of the floor plate and is located adjacent to the notochord." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001257 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0000022 ! floor plate relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0001258 name: floor plate rhombomere region namespace: zebrafish_anatomy def: "Floor plate that is part of the rhombomeres." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "floor plate hindbrain region" RELATED [] xref: TAO:0001258 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0000022 ! floor plate relationship: part_of ZFA:0000029 ! hindbrain relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001259 name: forebrain ventricle namespace: zebrafish_anatomy synonym: "forebrain vesicle" EXACT [] synonym: "prosencephalic ventricle" EXACT [] xref: TAO:0001259 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000109 ! forebrain relationship: part_of ZFA:0001261 ! ventricular system relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0001260 name: endocrine pancreas namespace: zebrafish_anatomy def: "The zebrafish endocrine pancreas is an compound organ component composed of small groups of islet cells that are distributed throughout the exocrine pancreas. The islet cells produce insulin, glucagon and somatostatin." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] comment: May be called pancreatic islets of Langerhans (related synonym). Alpha cells secrete glucagon like peptide, beta-insulin, delta cells-somatostatin, pancreastatin. May also be called "Brockman bodies". synonym: "pancreatic islet" RELATED [] synonym: "tail pancreas" RELATED [ZFIN:ZDB-PUB-080922-7] xref: TAO:0001260 is_a: ZFA:0001489 ! compound organ component relationship: develops_from ZFA:0001370 ! posterior pancreatic bud relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000140 ! pancreas relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0001261 name: ventricular system namespace: zebrafish_anatomy xref: TAO:0001261 is_a: ZFA:0001439 ! anatomical system relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000012 ! central nervous system relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001262 name: gonad primordium namespace: zebrafish_anatomy def: "Portion of tissue that gives rise to the immature gonad." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "gonadal primordium" EXACT [] synonym: "undifferentiated gonad" EXACT [] xref: TAO:0001262 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000039 ! Larval:Days 7-13 relationship: part_of ZFA:0000632 ! reproductive system relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001263 name: ovarian follicle stage I namespace: zebrafish_anatomy def: "Stage I follicles (less than 140 microns) contain a stage 1 oocyte and are in the primary growth stage." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-1020] synonym: "ovarian follicle stage 1" EXACT [] synonym: "previtellogenic ovarian follicle" EXACT [] xref: TAO:0001263 is_a: ZFA:0001110 ! ovarian follicle relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000042 ! Juvenile:Days 30-44 [Term] id: ZFA:0001264 name: ovarian follicle stage IV namespace: zebrafish_anatomy def: "Stage IV follicles (690-730 microns) contain a stage 4 oocyte and are considered mature." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-1020] synonym: "mature ovarian follicle" EXACT [] synonym: "ovarian follicle stage 4" EXACT [] xref: TAO:0001264 is_a: ZFA:0001110 ! ovarian follicle relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000042 ! Juvenile:Days 30-44 [Term] id: ZFA:0001265 name: ovarian follicle stage II namespace: zebrafish_anatomy def: "Stage II follicles (140-340 microns) contain a stage 2 oocyte." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-1020] synonym: "ovarian follicle stage 2" EXACT [] synonym: "ovarian follicles stage II" EXACT PLURAL [] xref: TAO:0001265 is_a: ZFA:0001110 ! ovarian follicle relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000042 ! Juvenile:Days 30-44 [Term] id: ZFA:0001266 name: ovarian follicle stage III namespace: zebrafish_anatomy def: "Stage III follicles (340-690 microns) contain a stage 3 oocyte." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-1020] synonym: "ovarian follicle stage 3" EXACT [] synonym: "ovarian follicles stage III" EXACT PLURAL [] xref: TAO:0001266 is_a: ZFA:0001110 ! ovarian follicle relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000042 ! Juvenile:Days 30-44 [Term] id: ZFA:0001267 name: cranial vasculature namespace: zebrafish_anatomy def: "Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the head." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "head vasculature" EXACT [] xref: TAO:0001267 is_a: ZFA:0005249 ! vasculature relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001114 ! head relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001268 name: sperm duct namespace: zebrafish_anatomy def: "Is a duct part of the testis that carries sperm and fluid to the cloaca." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] synonym: "efferent duct" EXACT [] synonym: "efferent tubule" EXACT [] synonym: "sperm ducts" EXACT PLURAL [] xref: TAO:0001268 is_a: ZFA:0005171 ! duct relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000598 ! testis relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001269 name: regenerating fin namespace: zebrafish_anatomy def: "Fin undergoing the process of regeneration." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "regenerating fins" EXACT PLURAL [] xref: TAO:0001269 is_a: ZFA:0000108 ! fin relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001270 name: blastema namespace: zebrafish_anatomy def: "A regenerating tissue composed of a proliferative mass of undifferentiated progenitor cells from which new differentiated structures arise." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-061108-12] synonym: "regeneration blastema" EXACT [ZFIN:ZDB-PUB-061108-12] xref: TAO:0001270 is_a: ZFA:0005147 ! regenerating tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001269 ! regenerating fin relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001271 name: neurohypophysis namespace: zebrafish_anatomy synonym: "posterior pituitary" EXACT [] xref: TAO:0001271 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000118 ! hypophysis relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001272 name: palatoquadrate arch namespace: zebrafish_anatomy def: "The dorsal portion of the first pharyngeal arch, comprising the upper jaw." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "dorsal mandibular arch" EXACT [] synonym: "dorsal visceral arch 1" EXACT [] synonym: "upper jaw" EXACT [] synonym: "upper pharyngeal jaw" EXACT [] xref: TAO:0001272 is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000444 ! suspensorium relationship: part_of ZFA:0000590 ! oral region relationship: part_of ZFA:0001227 ! mandibular arch skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001273 name: ventral mandibular arch namespace: zebrafish_anatomy def: "The ventral portion of the first pharyngeal arch, comprising the lower jaw." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "lower jaw" EXACT [] synonym: "mandible" EXACT [] synonym: "mandibular series" EXACT [] xref: TAO:0001273 is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000590 ! oral region relationship: part_of ZFA:0001227 ! mandibular arch skeleton relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0001274 name: coronomeckelian namespace: zebrafish_anatomy def: "The coronomeckelian is a membrane bone that ossifies on Meckel's cartilage where the tendon from the adductor mandibulae A3 inserts (6.1mm). In the adult, the coronomeckelian is a small, irregularly shaped bone that is fused to the dorsomedial surface of the anguloarticular, just dorsal to Meckel's cartilage." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "coronoid" RELATED [] synonym: "sesamoid articular" EXACT [] xref: TAO:0001274 is_a: ZFA:0001590 ! dermal bone relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000863 ! dermatocranium relationship: part_of ZFA:0001273 ! ventral mandibular arch relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001275 name: mentomeckelian namespace: zebrafish_anatomy is_obsolete: true consider: ZFA:0001612 [Term] id: ZFA:0001276 name: pharyngeal arch 2 skeleton namespace: zebrafish_anatomy synonym: "hyoid bars" EXACT [] xref: TAO:0001276 is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001216 ! splanchnocranium relationship: part_of ZFA:0001611 ! pharyngeal arch 2 relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001277 name: anterior chamber swim bladder namespace: zebrafish_anatomy def: "The anterior compartment of the swim bladder is thought to have acoustic resonance properties that play a key role in audition. It is connected to the posterior chamber via the ductus communicans." [ZFIN:ZDB-PUB-060306-11] synonym: "camera arerea weberiana" EXACT [] xref: TAO:0001277 is_a: ZFA:0001488 ! multi-tissue structure relationship: develops_from ZFA:0005337 ! anterior swim bladder bud relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000076 ! swim bladder relationship: start ZFS:0000040 ! Larval:Days 14-20 [Term] id: ZFA:0001278 name: posterior chamber swim bladder namespace: zebrafish_anatomy def: "The posterior compartment of the swim bladder plays a key role in buoyancy control. It is connected to the anterior chamber via the ductus communicans. This chamber corresponds to the swim bladder found in larval fish." [ZFIN:ZDB-PUB-060306-11] xref: TAO:0001278 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000076 ! swim bladder relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001279 name: branchiostegal ray 1 namespace: zebrafish_anatomy def: "Branchiostegal ray that is the most anterior ray which ossifies last (5.5 mm NL)." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "branchiostegal rays 1" EXACT PLURAL [] xref: TAO:0001279 is_a: ZFA:0000476 ! branchiostegal ray relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001280 name: branchiostegal ray 3 namespace: zebrafish_anatomy def: "Branchiostegal ray that is the most posterior ray which ossifies first (3.4 mm NL)." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "branchiostegal rays 3" EXACT PLURAL [] xref: TAO:0001280 is_a: ZFA:0000476 ! branchiostegal ray relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001281 name: branchiostegal ray 2 namespace: zebrafish_anatomy def: "Branchiostegal ray 2 is between rays 1 and 3 and ossifies second." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "branchiostegal rays 2" EXACT PLURAL [] xref: TAO:0001281 is_a: ZFA:0000476 ! branchiostegal ray relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001282 name: adenohypophysis namespace: zebrafish_anatomy def: "The anterior lobe of the hypophysis (pituitary gland). This lobe contains cells that produce prolactin, growth hormone, thyroid-stimulating hormone, follicle-stimulating hormone and proopiomelanocortin. In contrast to mammalian vertebrates, the adenohypophysis remains in a subepithelial position and there exists no equivalent of Rathke's pouch in zebrafish." [ZFIN:ZDB-PUB-040202-1] comment: Changed start to long-pec from protruding mouth. In future, make a primordium and split the stages. synonym: "anterior hypophysis" EXACT [] synonym: "anterior pituitary" EXACT [] xref: TAO:0001282 is_a: ZFA:0001488 ! multi-tissue structure relationship: develops_from ZFA:0001198 ! adenohypophyseal placode relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000118 ! hypophysis relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0001283 name: pupil namespace: zebrafish_anatomy def: "Anatomical space that is located in the center of the iris and allows light to impinge on the retina." [GOC:mh, http://www.encyclopedia.thefreedictionary.com/pupil, ORCiD:0000-0001-9114-8737] synonym: "pupils" EXACT PLURAL [] xref: TAO:0001283 is_a: ZFA:0001643 ! anatomical space relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000107 ! eye relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001284 name: optic fissure namespace: zebrafish_anatomy def: "Groove that is in the ventral optic cup and through which blood vessels pass to the enclosed mesenchyme." [http://www.medical-dictionary.thefreedictionary.com/optic+fissure] synonym: "choroid fissure" RELATED [] synonym: "optic fissures" EXACT PLURAL [] xref: TAO:0001284 is_a: ZFA:0001690 ! groove relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0001202 ! optic cup relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0001285 name: intersegmental vessel namespace: zebrafish_anatomy def: "Blood vessels that connect the dorsal aorta or the posterior cardinal vein and the dorsal longitudinal anastomotic vessel. They run along the vertical myotomal boundaries. At early stages these vessels don't have venous or arterial markers." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-030908-4] synonym: "intersegmental vessels" EXACT PLURAL [] synonym: "intersomitic vessels" EXACT [] synonym: "segmental vessel" EXACT [] xref: TAO:0001285 is_a: ZFA:0005314 ! blood vessel relationship: develops_from ZFA:0000014 ! dorsal aorta relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0005024 ! trunk vasculature relationship: part_of ZFA:0005037 ! post-vent vasculature relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001286 name: caudal vein plexus namespace: zebrafish_anatomy def: "Post-vent vasculature which forms an interconnecting network of venous tubes. The caudal vein plexus forms via a very active period of angiogenic sprouting, beginning at 25 hpf when venous endothelial cells of the posterior cardinal vein sprout and migrate ventrally, then fuse with neighboring tip cells. This process reiterates during a five-hour window, forming a primordial plexus by 30 hpf. By two days of development, the primitive caudal vein plexus has matured into a complex, well-perfused, venous vascular network. Starting at 4 dpf the caudal vein plexus starts to remodel and simplify." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5, ZFIN:ZDB-PUB-111011-36] xref: TAO:0001286 is_a: ZFA:0005037 ! post-vent vasculature relationship: end ZFS:0000039 ! Larval:Days 7-13 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001287 name: renal tubule namespace: zebrafish_anatomy def: "Renal duct that collects filtrate from the renal corpuscle and transports it to the collecting duct. Different parts of the renal tubule reabsorb specific components of the filtrate to leave only waste." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "mesonephric tubule" EXACT [] synonym: "renal tubules" EXACT PLURAL [] xref: TAO:0001287 is_a: ZFA:0005289 ! renal duct relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005282 ! nephron relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0001288 name: renal glomerulus namespace: zebrafish_anatomy def: "The multi-tissue structure where the glomerular basement membrane supported by mesonephric podocytes, filters blood from the glomerular capillaries." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "glomerular capillary tuft" RELATED [] synonym: "renal glomeruli" EXACT PLURAL [] xref: TAO:0001288 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005281 ! renal corpuscle relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0001289 name: ciliary marginal zone namespace: zebrafish_anatomy def: "Proliferative region at the periphery of the retina where retinal stem cells are located. After 60 hpf, the CMZ is the source of most retinal growth." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-050427-5] synonym: "circumferential germinal zone" EXACT [] synonym: "CMZ" EXACT [] synonym: "peripheral growth zone" EXACT [] synonym: "retinal ciliary marginal zone" EXACT [] synonym: "retinal proliferative zone" RELATED [] xref: TAO:0001289 is_a: ZFA:0000098 ! proliferative region relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000152 ! retina relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0001290 name: stomodeum namespace: zebrafish_anatomy def: "Anterior part of the embryonic alimentary canal formed as an invagination of the ectoderm; the future mouth." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-050523-10] synonym: "oral ectoderm" RELATED [ZFIN:ZDB-PUB-100726-23] xref: TAO:0001290 is_a: ZFA:0000292 ! surface structure relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000112 ! gut relationship: part_of ZFA:0000590 ! oral region relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0001291 name: facial ganglion namespace: zebrafish_anatomy def: "The sensory ganglion of the facial nerve." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "geniculate ganglion" EXACT [] synonym: "gVII" EXACT [] xref: TAO:0001291 is_a: ZFA:0001555 ! epibranchial ganglion relationship: develops_from ZFA:0000762 ! facio-acoustic neural crest relationship: develops_from ZFA:0001295 ! facial placode relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001292 name: epiphyseal stalk namespace: zebrafish_anatomy def: "The stalk emanates from the diencephalic roof at a left-of-medial position." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "pineal stalk" EXACT [] xref: TAO:0001292 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001359 ! pineal complex relationship: start ZFS:0000043 ! Juvenile:Days 45-89 [Term] id: ZFA:0001293 name: posterior kidney namespace: zebrafish_anatomy synonym: "posterior kidneys" EXACT PLURAL [] xref: TAO:0001293 is_a: ZFA:0000496 ! compound organ relationship: develops_from ZFA:0000151 ! pronephros relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000529 ! kidney relationship: start ZFS:0000038 ! Larval:Day 6 [Term] id: ZFA:0001294 name: epibranchial placode namespace: zebrafish_anatomy def: "Neurogenic placodes that generate neurons of the distal facial, glossopharyngeal and vagal ganglia, which convey sensation from the viscera, including pharyngeal endoderm structures, to the CNS. The epibranchial placodes are positioned ventrally to the ear and dorsally to the posterior pharyngeal pouches." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-050804-2, ZFIN:ZDB-PUB-070122-31] synonym: "epibranchial placodes" EXACT PLURAL [] xref: TAO:0001294 is_a: ZFA:0001309 ! neurogenic placode relationship: develops_from ZFA:0007061 ! epibranchial field relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000142 ! peripheral nervous system relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001295 name: facial placode namespace: zebrafish_anatomy def: "Epibranchial placode that gives rise to the facial ganglia." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-070122-31] synonym: "geniculate placode" EXACT [] xref: TAO:0001295 is_a: ZFA:0001294 ! epibranchial placode relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001296 name: glossopharyngeal placode namespace: zebrafish_anatomy def: "Epibranchial placode that gives rise to the glossopharyngeal ganglia. Associated with the third pharyngeal arch." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-070122-31] synonym: "petrosal placode" EXACT [] xref: TAO:0001296 is_a: ZFA:0001294 ! epibranchial placode relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001297 name: vagal placode 1 namespace: zebrafish_anatomy def: "Epibranchial placode that gives rise to vagal ganglion 1." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-070122-31] xref: TAO:0001297 is_a: ZFA:0001294 ! epibranchial placode relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001298 name: vagal placode 2 namespace: zebrafish_anatomy def: "Epibranchial placode that gives rise to vagal ganglion 2." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-070122-31] xref: TAO:0001298 is_a: ZFA:0001294 ! epibranchial placode relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001299 name: vagal placode 3 namespace: zebrafish_anatomy def: "Epibranchial placode that gives rise to vagal ganglion 3." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-070122-3] xref: TAO:0001299 is_a: ZFA:0001294 ! epibranchial placode relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001300 name: vagal placode 4 namespace: zebrafish_anatomy def: "Epibranchial placode that gives rise to vagal ganglion 4." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-070122-31] xref: TAO:0001300 is_a: ZFA:0001294 ! epibranchial placode relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001301 name: glossopharyngeal ganglion namespace: zebrafish_anatomy synonym: "gIX" EXACT [] synonym: "petrosal ganglion" EXACT [] xref: TAO:0001301 is_a: ZFA:0001555 ! epibranchial ganglion relationship: develops_from ZFA:0001296 ! glossopharyngeal placode relationship: develops_from ZFA:0007066 ! glossopharyngeal neural crest relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001302 name: vagal ganglion 1 namespace: zebrafish_anatomy synonym: "gX1" EXACT [] synonym: "nodose ganglion 1" EXACT [] xref: TAO:0001302 is_a: ZFA:0007067 ! vagal ganglion relationship: develops_from ZFA:0001297 ! vagal placode 1 relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001303 name: vagal ganglion 2 namespace: zebrafish_anatomy synonym: "gX2" EXACT [] synonym: "nodose ganglion 2" EXACT [] xref: TAO:0001303 is_a: ZFA:0007067 ! vagal ganglion relationship: develops_from ZFA:0001298 ! vagal placode 2 relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001304 name: vagal ganglion 3 namespace: zebrafish_anatomy synonym: "gX3" EXACT [] synonym: "nodose ganglion 3" EXACT [] xref: TAO:0001304 is_a: ZFA:0007067 ! vagal ganglion relationship: develops_from ZFA:0001299 ! vagal placode 3 relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001305 name: vagal ganglion 4 namespace: zebrafish_anatomy synonym: "gX4" EXACT [] synonym: "nodose ganglion 4" EXACT [] xref: TAO:0001305 is_a: ZFA:0007067 ! vagal ganglion relationship: develops_from ZFA:0001300 ! vagal placode 4 relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001306 name: pharyngeal arch namespace: zebrafish_anatomy def: "One of a series of paired bony or cartilaginous arches that develop along the lateral walls of the foregut. The pharyngeal arches have developmental contributions from endoderm, mesoderm, and neural crest cells and are separated by anterior lateral endoderm out-pockets known as pharyngeal pouches. There are seven pharyngeal arches." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-010912-16, ZFIN:ZDB-PUB-131119-6, ZFIN:ZDB-PUB-961014-985] synonym: "pharyngeal arches" EXACT PLURAL [] xref: TAO:0001306 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001114 ! head relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001307 name: pharyngeal musculature namespace: zebrafish_anatomy def: "Muscle system of the pharyngeal region." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0001307 is_a: ZFA:0000328 ! cephalic musculature relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001306 ! pharyngeal arch relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001308 name: organism subdivision namespace: zebrafish_anatomy def: "Anatomical structure which is a primary subdivision of whole organism. The mereological sum of these is the whole organism." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "body part" EXACT [] xref: CARO:0000032 xref: TAO:0001308 is_a: ZFA:0000037 ! anatomical structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001094 ! whole organism relationship: start ZFS:0000017 ! Gastrula:50%-epiboly [Term] id: ZFA:0001309 name: neurogenic placode namespace: zebrafish_anatomy def: "Neurogenic placodes are transient ectodermal thickenings that form at the border of the neural plate and epidermis and give rise to sensory neurons of the cranial ganglia." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-050804-2, ZFIN:ZDB-PUB-070122-31] synonym: "neurogenic placodes" EXACT PLURAL [] xref: TAO:0001309 is_a: ZFA:0001105 ! embryonic structure relationship: develops_from ZFA:0007059 ! neurogenic field relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000016 ! ectoderm relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0001310 name: dorsolateral placode namespace: zebrafish_anatomy def: "Lateral neurogenic placodes positioned dorsal of the epibranchial placodes." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "dorsolateral placodes" EXACT PLURAL [] xref: TAO:0001310 is_a: ZFA:0001309 ! neurogenic placode relationship: develops_from ZFA:0007060 ! dorsolateral field relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0001311 name: roof plate rhombomere region namespace: zebrafish_anatomy synonym: "roof plate hindbrain" RELATED [] xref: TAO:0001311 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0001064 ! rhombomere relationship: part_of ZFA:0007058 ! roof plate relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001312 name: dorsal anterior lateral line ganglion namespace: zebrafish_anatomy synonym: "anterodorsal lateral line ganglion" EXACT [] xref: TAO:0001312 is_a: ZFA:0001391 ! anterior lateral line ganglion relationship: develops_from ZFA:0001316 ! anterior lateral line placode relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001313 name: ventral anterior lateral line ganglion namespace: zebrafish_anatomy synonym: "anteroventral lateral line ganglion" EXACT [] xref: TAO:0001313 is_a: ZFA:0001391 ! anterior lateral line ganglion relationship: develops_from ZFA:0001316 ! anterior lateral line placode relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001314 name: posterior lateral line ganglion namespace: zebrafish_anatomy def: "The posterior lateral line ganglion develops from a cranial ectodermal placode and contains sensory neurons that innervate the posterior lateral line system." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "pLLg" EXACT [] synonym: "posterior lateral line ganglia" EXACT PLURAL [] xref: TAO:0001314 is_a: ZFA:0000120 ! lateral line ganglion relationship: develops_from ZFA:0001156 ! posterior lateral line placode relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001315 name: atrioventricular canal namespace: zebrafish_anatomy def: "The part of the heart connecting the atrium to the cardiac ventricle." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "AV canal" EXACT [] synonym: "AVC" EXACT [] xref: TAO:0001315 is_a: ZFA:0001488 ! multi-tissue structure relationship: develops_from ZFA:0001723 ! presumptive atrioventricular canal relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000114 ! heart relationship: start ZFS:0000032 ! Pharyngula:High-pec [Term] id: ZFA:0001316 name: anterior lateral line placode namespace: zebrafish_anatomy def: "Dorsolateral placode that gives rise to the anterior lateral line." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "anterior lateral line placodes" EXACT PLURAL [] xref: TAO:0001316 is_a: ZFA:0001310 ! dorsolateral placode relationship: end ZFS:0000031 ! Pharyngula:Prim-25 relationship: part_of ZFA:0001468 ! anterior lateral line system relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001317 name: endocardial cushion namespace: zebrafish_anatomy def: "Swellings of tissue present between the endocardial and myocardial cell layers that will give rise to the interstitial cells of the cardiac valves." [GOC:cvs, ORCiD:0000-0002-2244-7917] comment: ZDB-PUB-080309-14 says these don't exist but looked at 55 hpf rather then 36 hpf. synonym: "endocardial cushions" EXACT PLURAL [] xref: TAO:0001317 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000035 ! Larval:Protruding-mouth relationship: part_of ZFA:0001320 ! endocardium relationship: start ZFS:0000034 ! Hatching:Pec-fin [Term] id: ZFA:0001318 name: cardiac jelly namespace: zebrafish_anatomy def: "The extracellular matrix between the myocardium and the endocardium. The cardiac jelly plays a central role in the septation of the heart and comprises most of the thickness of the heart wall at early stages, but disappears as the heart differentiates." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0001318 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000149 ! primitive heart tube relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0001319 name: myocardium namespace: zebrafish_anatomy synonym: "cardiac muscle" RELATED [] synonym: "heart muscle " RELATED [] xref: TAO:0001319 is_a: ZFA:0005280 ! cardiac muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000114 ! heart relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001320 name: endocardium namespace: zebrafish_anatomy def: "Layer that lines the lumen of the heart." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0001320 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0001724 ! presumptive endocardium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000114 ! heart relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001321 name: neurocranial trabecula namespace: zebrafish_anatomy synonym: "neurocranial trabeculae" EXACT PLURAL [] synonym: "trabecula" EXACT [] synonym: "trabecular cartilage" EXACT [] xref: TAO:0001321 is_a: ZFA:0001461 ! chondrocranium cartilage relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000351 ! olfactory region relationship: part_of ZFA:0001580 ! neurocranium relationship: start ZFS:0000032 ! Pharyngula:High-pec [Term] id: ZFA:0001322 name: dorsoventral diencephalic tract namespace: zebrafish_anatomy def: "A tract originating in the epiphysis and fasciculating with the tract of the postoptic commissure dorsal to the ventral flexure." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-719, ZFIN:ZDB-PUB-961014-955] synonym: "DVDT" EXACT [] xref: TAO:0001322 is_a: ZFA:0000338 ! diencephalic white matter relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001323 name: mid intestine namespace: zebrafish_anatomy def: "The terminal region of the mid intestine is comprised of specialized enterocytes that appear to play a role in mucosal immunity. The mid intestine also appears to be involved in iron absorption." [ZFIN:ZDB-PUB-050120-6, ZFIN:ZDB-PUB-050831-7] xref: TAO:0001323 is_a: ZFA:0001488 ! multi-tissue structure relationship: develops_from ZFA:0005737 ! intestinal rod relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001338 ! intestine relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0001324 name: enteric musculature namespace: zebrafish_anatomy def: "Musculature of the gut." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] synonym: "gut musculature" EXACT [] synonym: "tunica muscularis" RELATED [http:/www.vivo.colostate.edu/hbooks/pathphys/digestion/basics/gi_microanatomy.html] xref: TAO:0001324 is_a: ZFA:0000548 ! musculature system relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000112 ! gut relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001325 name: neural prezygapophysis namespace: zebrafish_anatomy def: "Paired, anteromedially directed processes from the neural arches, ligamentously joined to the postzygapophyses of the preceding vertebra." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "neural prezygapophyses" EXACT PLURAL [] synonym: "neural prezygopophyses" EXACT [] xref: TAO:0001325 is_a: ZFA:0001591 ! endochondral bone relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001066 ! neural arch relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001326 name: lens epithelium namespace: zebrafish_anatomy def: "Epithelium which borders the anterior and equitorial region of the lens. Lens growth in zebrafish occurs via the differentiation of additional fibre cells from lens epithelial cells." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-070504-24, ZFIN:ZDB-PUB-100202-20] xref: TAO:0001326 is_a: ZFA:0001486 ! epithelium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000035 ! lens relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001327 name: abdominal musculature namespace: zebrafish_anatomy def: "Trunk musculature that is located in ventral wall of abdomen." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001327 is_a: ZFA:0000473 ! trunk musculature relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0001328 name: neuromere namespace: zebrafish_anatomy def: "A metameric segment of the central nervous system." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "neural segment" EXACT [] synonym: "neuromeres" EXACT PLURAL [] xref: TAO:0001328 is_a: ZFA:0001308 ! organism subdivision relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000012 ! central nervous system relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001329 name: retinal inner plexiform layer namespace: zebrafish_anatomy def: "The layer within the retina where the bipolar cells synapse with the dendrites of the ganglion cells." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "inner plexiform layer" EXACT [] xref: TAO:0001329 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000046 ! retinal neural layer relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001330 name: retinal outer plexiform layer namespace: zebrafish_anatomy def: "The layer within the retina where the bipolar cells synapse with the photoreceptor cells." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "retinal outer plexiform layers" EXACT PLURAL [] xref: TAO:0001330 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000046 ! retinal neural layer relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001331 name: outer limiting membrane namespace: zebrafish_anatomy def: "Layer that separates the inner segment portions of the photo receptors from their cell nucleus." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "external limiting membrane" EXACT [] synonym: "outer limiting membranes" EXACT PLURAL [] xref: TAO:0001331 is_a: ZFA:0000382 ! acellular anatomical structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000046 ! retinal neural layer relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001332 name: spinal neuromere namespace: zebrafish_anatomy synonym: "spinal cord segment" EXACT [] synonym: "spinal neuromeres" EXACT PLURAL [] xref: TAO:0001332 is_a: ZFA:0001328 ! neuromere is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000075 ! spinal cord relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001333 name: visceral organ namespace: zebrafish_anatomy is_obsolete: true [Term] id: ZFA:0001334 name: presumptive enteric nervous system namespace: zebrafish_anatomy def: "Presumptive structure fated to become enteric nervous system. Develops from the vagal neural crest." [GOC:ymb, ORCiD:0000-0002-9900-7880] xref: TAO:0001334 is_a: ZFA:0001116 ! presumptive structure relationship: develops_from ZFA:0000818 ! vagal neural crest relationship: end ZFS:0000032 ! Pharyngula:High-pec relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001335 name: supradorsal namespace: zebrafish_anatomy def: "Supradorsals are small paired nodules of cartilage positioned at the distal ends of neural arches and the proximal end of neural spines (Arratia et al., 2001)." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "supradorsals" EXACT PLURAL [] xref: TAO:0001335 is_a: ZFA:0001457 ! postcranial axial cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001066 ! neural arch relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001336 name: neural spine namespace: zebrafish_anatomy def: "Neural spines are extensions of neural arches dorsal to the neural canal in the median skeletogenous septum. Neural spines are typically unpaired median structures but can be paired in some instances, e.g., in the abdominal region of basal teleosts such as Leptolepis, Elops, Megalops, and Hiodon)." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "neural spines" EXACT PLURAL [] xref: TAO:0001336 is_a: ZFA:0001591 ! endochondral bone relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001066 ! neural arch relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001338 name: intestine namespace: zebrafish_anatomy def: "Folded tube that has parts intestinal bulb, mid intestine and posterior intestine. The intestine is where digestion and nutrient absorption occurs." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-050120-6] xref: TAO:0001338 is_a: ZFA:0001490 ! cavitated compound organ relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000112 ! gut relationship: part_of ZFA:0007116 ! pleuroperitoneal region relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0001339 name: nucleus of the tract of the anterior commissure namespace: zebrafish_anatomy def: "Telencephalic nucleus from which the axons of the anterior commissure originate." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "ntAC" EXACT [] xref: TAO:0001339 is_a: ZFA:0001660 ! telencephalic nucleus relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001340 name: nucleus of the tract of the postoptic commissure namespace: zebrafish_anatomy def: "The nucleus containing the cell bodies of neurons whose axons form the postoptic commissure." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "ntPOC" EXACT [] xref: TAO:0001340 is_a: ZFA:0001659 ! diencephalic nucleus relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001341 name: intervening zone namespace: zebrafish_anatomy def: "A zone of delayed differentiation at the midbrain hindbrain boundary. The IZ separates midbrain from anterior hindbrain neuronal clusters and has been described in all vertebrates." [ZFIN:ZDB-PUB-030307-1] synonym: "IZ" EXACT [] xref: TAO:0001341 is_a: ZFA:0001478 ! anatomical cluster relationship: develops_from ZFA:0001342 ! presumptive intervening zone relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000042 ! midbrain hindbrain boundary relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0001342 name: presumptive intervening zone namespace: zebrafish_anatomy def: "Embryonic structure that gives rise to the intervening zone." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001342 is_a: ZFA:0001105 ! embryonic structure relationship: end ZFS:0000025 ! Segmentation:10-13 somites relationship: part_of ZFA:0007023 ! posterior neural keel relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0001343 name: telencephalon diencephalon boundary namespace: zebrafish_anatomy def: "Boundary between the telencephalon and diencephalon." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001343 is_a: ZFA:0001689 ! anatomical line relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000109 ! forebrain relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001344 name: zona limitans intrathalamica namespace: zebrafish_anatomy def: "The border between the dorsal and ventral thalamus." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "zli" EXACT [] xref: TAO:0001344 is_a: ZFA:0001689 ! anatomical line relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001215 ! thalamus relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001345 name: interrenal gland namespace: zebrafish_anatomy def: "An bilobed multi-tissue structure lateral to the notochord composed of an epithelium consisting of steroid producing cells interposed with chromaffin cells. The interrenal gland is embedded within the head kidney. The interrenal gland is the zebrafish functional equivalent of the mammalian adrenal cortex." [GOC:cvs, GOC:mh, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-030408-12, ZFIN:ZDB-PUB-061108-13] xref: TAO:0001345 is_a: ZFA:0001488 ! multi-tissue structure relationship: develops_from ZFA:0001346 ! interrenal primordium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000669 ! head kidney relationship: start ZFS:0000035 ! Larval:Protruding-mouth [Term] id: ZFA:0001346 name: interrenal primordium namespace: zebrafish_anatomy def: "Multi-tissue structure located in the kidney that develops into the interrenal gland." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0001346 is_a: ZFA:0001488 ! multi-tissue structure relationship: develops_from ZFA:0001206 ! intermediate mesoderm relationship: end ZFS:0000035 ! Larval:Protruding-mouth relationship: part_of ZFA:0000151 ! pronephros relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0001347 name: stratum fibrosum et griseum superficiale namespace: zebrafish_anatomy def: "Layer of the optic tectum that is ventral to the stratum opticum and dorsal to the stratum griseum centrale, contains three sublaminae. Has hypothalamic and retinal inputs." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-081218-37, ZFIN:ZDB-PUB-101011-44, ZFIN:ZDB-PUB-180207-5] synonym: "SFGS" RELATED [] synonym: "strata fibrosum et griseum superficiales" EXACT PLURAL [] xref: TAO:0001347 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005907 ! tectal neuropile relationship: start ZFS:0000038 ! Larval:Day 6 [Term] id: ZFA:0001348 name: stratum marginale namespace: zebrafish_anatomy def: "Dorsalmost layer of the tectal neuropile that does not receive direct retinal inputs, receives axonal projections from the torus longitudinalis." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-180207-5] synonym: "strata marginale" EXACT PLURAL [] synonym: "stratum fibrosum marginale" EXACT [ZFIN:ZDB-PUB-180207-5] xref: TAO:0001348 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005907 ! tectal neuropile relationship: start ZFS:0000038 ! Larval:Day 6 [Term] id: ZFA:0001349 name: stratum opticum namespace: zebrafish_anatomy def: "Portion of tissue that is the most superficial layer of the tectal neuropil closest to the eye target of the retinal axons." [ZFIN:ZDB-PUB-101101-16] synonym: "strata opticum" EXACT PLURAL [] xref: TAO:0001349 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005907 ! tectal neuropile relationship: start ZFS:0000038 ! Larval:Day 6 [Term] id: ZFA:0001350 name: stratum griseum centrale namespace: zebrafish_anatomy xref: TAO:0001350 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005907 ! tectal neuropile relationship: start ZFS:0000038 ! Larval:Day 6 [Term] id: ZFA:0001351 name: stratum album centrale namespace: zebrafish_anatomy def: "Has hypothalamic inputs." [ZFIN:ZDB-PUB-180207-5] synonym: "strata album centrales" EXACT PLURAL [] xref: TAO:0001351 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005907 ! tectal neuropile relationship: start ZFS:0000038 ! Larval:Day 6 [Term] id: ZFA:0001355 name: primitive meninx namespace: zebrafish_anatomy def: "The vascularized fibrous sheath that surrounds the central nervous system." [http://www.archive.org/stream/contributionstoe04carn#page/n3/mode/2up] synonym: "meninges" EXACT [] synonym: "meninx primitiva" EXACT [] xref: TAO:0001355 is_a: ZFA:0001488 ! multi-tissue structure relationship: develops_from ZFA:0000045 ! neural crest relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000396 ! nervous system relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001356 name: terminal nerve namespace: zebrafish_anatomy def: "The terminal nerve, located anterior to cranial nerve I, is comprised of a group of cells with somata adjacent to the olfactory bulb and processes that extend anteriorly to the olfactory epithelium and posteriorly to the telencephalon. In teleost fish an additional group of axons extends along the optic tract and delivers putative neuromodulators to the retina. It is thought to develop from cranial neural crest." [PMID:15821344, ZFIN:ZDB-PUB-041202-1] synonym: "nervus terminalis" EXACT [] xref: TAO:0001356 is_a: ZFA:0000641 ! cranial nerve relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001357 name: alar plate midbrain region namespace: zebrafish_anatomy def: "Portion of tissue that is ventrolateral to the roof plate and part of the midbrain." [ISBN:0444517383, ZFIN:ZDB-PUB-961014-576] xref: TAO:0001357 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0007039 ! midbrain neural tube relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001358 name: roof plate diencephalic region namespace: zebrafish_anatomy def: "Roof plate that is part of the diencephalic region." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] xref: TAO:0001358 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0000101 ! diencephalon relationship: part_of ZFA:0007058 ! roof plate relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001359 name: pineal complex namespace: zebrafish_anatomy xref: TAO:0001359 is_a: ZFA:0001512 ! anatomical group relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000509 ! epithalamus relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001360 name: parapineal organ namespace: zebrafish_anatomy def: "An unpaired left-sided accessory organ which plays a role in establishing lateral brain left right asymmetry." [ZFIN:ZDB-PUB-030206-1] xref: TAO:0001360 is_a: ZFA:0000496 ! compound organ relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001359 ! pineal complex relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0001361 name: basiventral namespace: zebrafish_anatomy def: "Basiventrals are bilaterally paired cartilages lateral to the notochord which are replaced by ossified parapophyses or hemal arches." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "arcualia" RELATED [] xref: TAO:0001361 is_a: ZFA:0001457 ! postcranial axial cartilage relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001362 name: parapophysis namespace: zebrafish_anatomy def: "Parapophyses are lateral or ventrolateral projections of vertebrae to which ribs are attached in Danio rerio. Parapophyses can arise through replacement ossification of a basiventral or form directly in bone. They are separated from the centrum in basal teleosts, e.g., Leptolepis coryphaenoides, Megalops and Elops." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "lateral process of basiventral" EXACT [] synonym: "parapophyses" EXACT PLURAL [] synonym: "transverse process" EXACT [] xref: TAO:0001362 is_a: ZFA:0001591 ! endochondral bone relationship: develops_from ZFA:0001361 ! basiventral relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001582 ! non-Weberian precaudal vertebra relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001363 name: neural complex namespace: zebrafish_anatomy alt_id: ZFA:0001398 def: "The neural complex is the collective term for the ossified supraneurals (Sn 2 and Sn 3) and their membrane bone extensions above the first four vertebrae (Hoffmann and Britz, 2006)." [ZFIN:ZDB-PUB-031103-13] synonym: "Weberian supraneural" EXACT [] xref: TAO:0001363 is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001188 ! Weberian apparatus relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0001364 name: hemal spine namespace: zebrafish_anatomy def: "Hemal spines are extensions of hemal arches in the ventral skeletogenous septum of the caudal region." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "haemal spine" EXACT [] xref: TAO:0001364 is_a: ZFA:0001591 ! endochondral bone relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000519 ! hemal arch relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001365 name: trigeminal motor nucleus namespace: zebrafish_anatomy synonym: "motor nucleus V" EXACT [] synonym: "nV" EXACT [] xref: TAO:0001365 is_a: ZFA:0001658 ! hindbrain nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001366 name: tract of the postoptic commissure namespace: zebrafish_anatomy def: "Tract that extends from the postoptic commissure through a curved trajectory in the diencephalon into the ventral midbrain. In the anterior diencephalon the TOP is a single tract but caudally the axons of the TPOC diverge and tend to grow in distinct parallel bundles. The more dorsal bundles extend in the dorsolateral tegmentum, the ventral bundles of the TPOC merge into the DLF in the hindbrain." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-167] synonym: "TPOC" EXACT [] xref: TAO:0001366 is_a: ZFA:0001682 ! white matter relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000059 ! postoptic commissure relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001367 name: forebrain midbrain boundary namespace: zebrafish_anatomy def: "The boundary between the diencephalon and the mesencephalon." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "diencephalic-mesencephalic boundary" EXACT [] xref: TAO:0001367 is_a: ZFA:0001689 ! anatomical line relationship: develops_from ZFA:0007040 ! forebrain midbrain boundary neural tube relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000008 ! brain relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0001368 name: presumptive forebrain midbrain boundary namespace: zebrafish_anatomy def: "Embryonic structure that gives rise to the forebrain midbrain boundary." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001368 is_a: ZFA:0001105 ! embryonic structure relationship: end ZFS:0000020 ! Gastrula:75%-epiboly relationship: part_of ZFA:0000146 ! presumptive brain relationship: part_of ZFA:0007014 ! anterior presumptive neural plate relationship: start ZFS:0000020 ! Gastrula:75%-epiboly [Term] id: ZFA:0001369 name: anterior pancreatic bud namespace: zebrafish_anatomy def: "Pancreatic bud that develops from a ridge on the ventral side of the intestinal bulb primordium." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-030902-16] synonym: "exocrine anlage" EXACT [ZFIN:ZDB-PUB-050623-3] synonym: "rostral anlage" EXACT [] synonym: "ventral anterior bud" EXACT [ZFIN:ZDB-PUB-030902-16] synonym: "ventral pancreatic anlage" EXACT [] xref: TAO:0001369 is_a: ZFA:0001390 ! pancreatic bud relationship: develops_from ZFA:0005738 ! intestinal bulb primordium relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000031 ! Pharyngula:Prim-25 [Term] id: ZFA:0001370 name: posterior pancreatic bud namespace: zebrafish_anatomy def: "Pancreatic bud that forms dorsal and adjacent to the developing intestine." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-030902-16] comment: Furthermore, zebrafish exocrine progenitors appear to arise from endoderm rostral to the gut tube, which it subsequently joins, rather than as an extension of the epithelium of the main duct. Thus, we argue against a classical model (Field et al., 2003) in which the zebrafish exocrine pancreas buds from either a rod of pre-intestinal endoderm or the gut tube which in zebrafish gives rise to the intestine (Wallace and Pack, 2003). ZDB-PUB-050623-3. synonym: "caudal anlage" EXACT [] synonym: "dorsal pancreatic anlage" EXACT [] synonym: "dorsal posterior bud" RELATED [ZFIN:ZDB-PUB-030902-16] xref: TAO:0001370 is_a: ZFA:0001390 ! pancreatic bud relationship: end ZFS:0000033 ! Hatching:Long-pec relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001371 name: pancreatic system namespace: zebrafish_anatomy def: "System responsible for the production and movement of pancreatic hormones and enzymes." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] xref: TAO:0001371 is_a: ZFA:0001439 ! anatomical system relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000339 ! digestive system relationship: part_of ZFA:0001158 ! endocrine system relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001372 name: pancreatic duct namespace: zebrafish_anatomy def: "Duct that collects and carries secretions of the exocrine pancreas." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] xref: TAO:0001372 is_a: ZFA:0005162 ! digestive system duct relationship: develops_from ZFA:0001369 ! anterior pancreatic bud relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001371 ! pancreatic system relationship: start ZFS:0000031 ! Pharyngula:Prim-25 [Term] id: ZFA:0001373 name: migratory slow muscle precursor cell namespace: zebrafish_anatomy def: "Cells that initially are located adjacent to the spinal cord and notochord that migrate from their initial medial position radially through the myotome to the lateral surface of the somites." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961219-12] subset: cell_slim synonym: "migratory slow muscle precursor cells" EXACT PLURAL [] xref: TAO:0001373 is_a: ZFA:0009000 ! cell relationship: develops_from ZFA:0000003 ! adaxial cell relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000155 ! somite relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0001374 name: atrial myocardium namespace: zebrafish_anatomy def: "Myocardium of the heart atrium." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0001374 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000471 ! atrium relationship: part_of ZFA:0001319 ! myocardium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001375 name: ventriculo bulbo valve namespace: zebrafish_anatomy def: "A heart valve located between the ventricle and bulbus arteriosus." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "bulboventricular valve" EXACT [] xref: TAO:0001375 is_a: ZFA:0005065 ! heart valve relationship: develops_from ZFA:0001317 ! endocardial cushion relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000009 ! cardiac ventricle relationship: part_of ZFA:0000173 ! bulbus arteriosus relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001376 name: presumptive ectoderm namespace: zebrafish_anatomy alt_id: ZFA:0000147 def: "Presumptive structure at the animal poll of the blastula that will develop into ectoderm via the epiblast. Determined by fate mapping." [ZFIN:ZDB-PUB-961014-608] synonym: "presumptive epidermis" EXACT [] xref: TAO:0001376 is_a: ZFA:0001116 ! presumptive structure relationship: end ZFS:0000019 ! Gastrula:Shield relationship: start ZFS:0000014 ! Blastula:Sphere [Term] id: ZFA:0001377 name: presumptive mesoderm namespace: zebrafish_anatomy def: "Presumptive structure fated to become mesoderm. Determined by fate mapping." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] xref: TAO:0001377 is_a: ZFA:0001116 ! presumptive structure relationship: end ZFS:0000021 ! Gastrula:90%-epiboly relationship: start ZFS:0000014 ! Blastula:Sphere [Term] id: ZFA:0001378 name: axial hypoblast namespace: zebrafish_anatomy xref: TAO:0001378 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0000071 ! shield relationship: end ZFS:0000022 ! Gastrula:Bud relationship: part_of ZFA:0000117 ! hypoblast relationship: start ZFS:0000020 ! Gastrula:75%-epiboly [Term] id: ZFA:0001379 name: pharyngeal ectoderm namespace: zebrafish_anatomy xref: TAO:0001379 is_a: ZFA:0000016 ! ectoderm relationship: end ZFS:0000027 ! Segmentation:20-25 somites relationship: part_of ZFA:0000056 ! pharynx relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001381 name: hypohyal bone namespace: zebrafish_anatomy def: "Hypohyals are the most anterior of the bilaterally paired ventral hyoid arch elements. The two hypohyals in zebrafish ossify at the anterodorsal and anteroventral tips of the ceratohyal cartilages; no separate hypohyal cartilages are present." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "hypohyals" EXACT PLURAL [] xref: TAO:0001381 is_a: ZFA:0001591 ! endochondral bone relationship: develops_from ZFA:0001400 ! ceratohyal cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001402 ! ventral hyoid arch relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001382 name: epibranchial uncinate process namespace: zebrafish_anatomy def: "Epibranchials 1-3 in adults are compound elements formed by the fusion of epibranchial cartilages and the so-called uncinate processes. Posteromedially directed uncinate processes develop on the posterior edge of epibranchials 1-3. These appear as separate centers of chondrification (6.2 mm) that later fuse laterally to the posterior edges of the epibranchial cartilages (6.8 mm)." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "epibranchial uncinate processes" EXACT PLURAL [] xref: TAO:0001382 is_a: ZFA:0001591 ! endochondral bone relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000658 ! epibranchial bone relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001383 name: fin bud namespace: zebrafish_anatomy def: "Surface structure that develops into a paired fin." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "fin buds" EXACT PLURAL [] xref: TAO:0001383 is_a: ZFA:0000292 ! surface structure relationship: end ZFS:0000042 ! Juvenile:Days 30-44 relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001384 name: pelvic fin bud namespace: zebrafish_anatomy def: "Fin bud that develops into the pelvic fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "pelvic fin buds" EXACT PLURAL [] xref: TAO:0001384 is_a: ZFA:0001383 ! fin bud relationship: develops_from ZFA:0001454 ! pelvic fin field relationship: end ZFS:0000042 ! Juvenile:Days 30-44 relationship: start ZFS:0000040 ! Larval:Days 14-20 [Term] id: ZFA:0001385 name: apical ectodermal ridge pelvic fin bud namespace: zebrafish_anatomy def: "Apical ectodermal ridge that is part of the pelvic fin bud." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "apical ectodermal ridge pelvic fin buds" EXACT PLURAL [] xref: TAO:0001385 is_a: ZFA:0001702 ! apical ectodermal ridge relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0001384 ! pelvic fin bud relationship: start ZFS:0000040 ! Larval:Days 14-20 [Term] id: ZFA:0001386 name: mesoderm pelvic fin bud namespace: zebrafish_anatomy def: "Mesoderm part of pelvic fin bud." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "mesoderm pelvic fin buds" EXACT PLURAL [] xref: TAO:0001386 is_a: ZFA:0000041 ! mesoderm relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0001384 ! pelvic fin bud relationship: start ZFS:0000040 ! Larval:Days 14-20 [Term] id: ZFA:0001387 name: pelvic fin skeleton namespace: zebrafish_anatomy def: "Skeleton that supports the pelvic fin. The skeleton consists of consists of supporting endochondral radials and dermal fin rays or lepidotrichia." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001387 is_a: ZFA:0000027 ! paired fin skeleton relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001184 ! pelvic fin relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001388 name: epithelial mesenchymal boundary namespace: zebrafish_anatomy synonym: "epithelial mesenchymal boundarys" EXACT PLURAL [] xref: TAO:0001388 is_a: ZFA:0001689 ! anatomical line relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001269 ! regenerating fin relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001389 name: regeneration epithelium namespace: zebrafish_anatomy def: "Epithelium of the regenerating fin that is formed as part of the healing process." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] synonym: "epidermal cap" EXACT [] synonym: "wound epidermis" EXACT [] synonym: "wound epithelium" EXACT [] xref: TAO:0001389 is_a: ZFA:0001486 ! epithelium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001269 ! regenerating fin relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001390 name: pancreatic bud namespace: zebrafish_anatomy def: "Embryonic structure that develops from the pancreas primordium and develops into the pancreas." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] synonym: "pancreatic buds" EXACT PLURAL [] xref: TAO:0001390 is_a: ZFA:0001105 ! embryonic structure relationship: develops_from ZFA:0000254 ! pancreas primordium relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001371 ! pancreatic system relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001391 name: anterior lateral line ganglion namespace: zebrafish_anatomy def: "The anterior lateral line ganglia develops from cranial ectodermal placodes and contain sensory neurons that innervate the anterior lateral line system." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "anterior lateral line ganglia" EXACT PLURAL [] xref: TAO:0001391 is_a: ZFA:0000120 ! lateral line ganglion relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001392 name: parapophysis 1 namespace: zebrafish_anatomy def: "Lateral projections from the first centrum in cyprinids, absent in catostomids, and absent in characiphysans (Fink and Fink, 1996)." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "basipophysis 1" EXACT [] synonym: "lateral process 1" EXACT [] xref: TAO:0001392 is_a: ZFA:0001362 ! parapophysis relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001167 ! vertebra 1 relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001393 name: parapophysis 2 namespace: zebrafish_anatomy def: "Lateral projection from the second centrum, absent in Siluriformes (Fink and Fink, 1996)." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "basipophysis" EXACT [] synonym: "lateral process 2" EXACT [] xref: TAO:0001393 is_a: ZFA:0001362 ! parapophysis relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001168 ! vertebra 2 relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001394 name: neural arch 3 namespace: zebrafish_anatomy def: "Neural arch 3 is expanded and fused to supraneural 3 as part of a neural complex roofing and protecting the neural canal." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001394 is_a: ZFA:0001066 ! neural arch relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001169 ! vertebra 3 relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001395 name: neural arch 4 namespace: zebrafish_anatomy def: "Neural arch 4 is expanded and fused to supraneural 3 as part of the neural complex. A reduced neural spine projects from the posterior margin of the neural complex." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001395 is_a: ZFA:0001066 ! neural arch relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001170 ! vertebra 4 relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001396 name: parapophysis/rib namespace: zebrafish_anatomy def: "The parapophysis + rib, fused to the centrum, extends laterally then angles anteroventrally. A thin plate, the os suspensorium fuses to its median surface." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001396 is_a: ZFA:0001591 ! endochondral bone relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001170 ! vertebra 4 relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001397 name: post-Weberian supraneural namespace: zebrafish_anatomy def: "Posterior to the Weberian apparatus, otophysan supraneurals form as median, unpaired, rod- or platelike elements, as in other actinopterygians. Supraneural 4 has been lost in zebrafish." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-031103-13] synonym: "post-Weberian supraneurals" EXACT PLURAL [] xref: TAO:0001397 is_a: ZFA:0000442 ! supraneural relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000040 ! Larval:Days 14-20 [Term] id: ZFA:0001399 name: palatoquadrate cartilage namespace: zebrafish_anatomy def: "Cartilage that is the dorsal component of the first pharyngeal arch. It is roughly triangular with slightly concave dorsal edges and convex ventral edges. The anteroventral corner gives rise the quadrate and articulates with the posterior end of Meckel's cartilage. The anterodorsal tip articulates with the lateral edge of the ethmoid plate and the posteroventral edge articulates with the anterodorsal edge of the hyosymplectic." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-192] synonym: "dorsal mandibular cartilage" EXACT [] synonym: "pterygoquadrate" EXACT [] synonym: "quadrate cartilage" EXACT [] xref: TAO:0001399 is_a: ZFA:0001460 ! pharyngeal arch cartilage relationship: end ZFS:0000044 ! Adult relationship: overlaps ZFA:0007117 ! Meckel's cartilage-palatoquadrate cartilage joint relationship: part_of ZFA:0001272 ! palatoquadrate arch relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0001400 name: ceratohyal cartilage namespace: zebrafish_anatomy def: "Pharyngeal arch cartilage that is bilaterally paired and the largest cartilaginous component of the ventral hyoid arch." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001400 is_a: ZFA:0001460 ! pharyngeal arch cartilage relationship: end ZFS:0000044 ! Adult relationship: overlaps ZFA:0005885 ! operculohyoid ligament relationship: part_of ZFA:0001402 ! ventral hyoid arch relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0001401 name: dorsal hyoid arch namespace: zebrafish_anatomy synonym: "dorsal visceral arch 2" EXACT [] xref: TAO:0001401 is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000444 ! suspensorium relationship: part_of ZFA:0001276 ! pharyngeal arch 2 skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001402 name: ventral hyoid arch namespace: zebrafish_anatomy synonym: "ventral visceral arch 2" EXACT [] xref: TAO:0001402 is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001276 ! pharyngeal arch 2 skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001403 name: supraethmoid namespace: zebrafish_anatomy def: "Dermal bone that first appears as paired ossifications in the membrane (dermis) dorsolateral to the ethmoid cartilage and anteriolateral to the lateral ethmoids, later having the appearance of one butterfly-shaped element. Fused to the anterodorsal margin of the mesethmoid. Bordered anteriorly by the kinethmoid and posteriorly by the frontal." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "supra-ethmoid" RELATED [] xref: TAO:0001403 is_a: ZFA:0001590 ! dermal bone relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000351 ! olfactory region relationship: part_of ZFA:0000863 ! dermatocranium relationship: start ZFS:0000041 ! Larval:Days 21-29 [Term] id: ZFA:0001404 name: preethmoid bone namespace: zebrafish_anatomy def: "Small rounded to egg-shaped cartilage bone that sits in an anteriolateral depression on the prevomer. Articulates with the autopalatine in all cypriniforms." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "pre-ethmoid" EXACT [] synonym: "preethmoid bones" EXACT PLURAL [] xref: TAO:0001404 is_a: ZFA:0001591 ! endochondral bone relationship: develops_from ZFA:0001405 ! ethmoid cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000351 ! olfactory region relationship: part_of ZFA:0001424 ! chondrocranium relationship: start ZFS:0000043 ! Juvenile:Days 45-89 [Term] id: ZFA:0001405 name: ethmoid cartilage namespace: zebrafish_anatomy def: "Bilaterally paired neurocranium cartilage which is initially plate-like and formed from the anterior fusion between the bilaterally paired trabecula cranii. It grows dorsally between the laminae orbitonasales to attain a complex shape." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "ethmoid plate" EXACT [] xref: TAO:0001405 is_a: ZFA:0001461 ! chondrocranium cartilage relationship: end ZFS:0000042 ! Juvenile:Days 30-44 relationship: part_of ZFA:0000351 ! olfactory region relationship: part_of ZFA:0001580 ! neurocranium relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0001406 name: kinethmoid bone namespace: zebrafish_anatomy def: "Small median unpaired dermal sesamoid bone in the premaxillary-ethmoid ligament between the mesethmoid and the premaxilla that enhances the protractability of the upper jaw. It forms in the premaxillary-ethmoid ligament. The kinethmoid arose de novo in the ancestor of Cypriniformes, the only group within Ostariophysi, in which it is found (Fink and Fink, 1981)." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001406 is_a: ZFA:0001590 ! dermal bone relationship: develops_from ZFA:0000585 ! kinethmoid cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000351 ! olfactory region relationship: part_of ZFA:0000863 ! dermatocranium relationship: part_of ZFA:0001424 ! chondrocranium relationship: start ZFS:0000041 ! Larval:Days 21-29 [Term] id: ZFA:0001407 name: infraorbital 2 namespace: zebrafish_anatomy def: "Plate like dermal bone, variable in size, though usually one of the smallest in the series. Bears 2-3 neuromast pores enclosed within the infraorbital canal (Nelson, 1969)." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001407 is_a: ZFA:0000376 ! infraorbital relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001649 ! infraorbital series relationship: start ZFS:0000042 ! Juvenile:Days 30-44 [Term] id: ZFA:0001408 name: infraorbital 3 namespace: zebrafish_anatomy def: "Plate like dermal bone, variable in size, but usually largest in the series. Usually fused with IO4 (eg. Opsariichthys, Nelson (1969)). Usually bears 3 neuromast pores enclosed within the infraorbital canal (Nelson, 1969)." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001408 is_a: ZFA:0000376 ! infraorbital relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001649 ! infraorbital series relationship: start ZFS:0000042 ! Juvenile:Days 30-44 [Term] id: ZFA:0001409 name: infraorbital 4 namespace: zebrafish_anatomy def: "Plate like dermal bone. Usually fused with infraorbital 3." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001409 is_a: ZFA:0000376 ! infraorbital relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001649 ! infraorbital series relationship: start ZFS:0000042 ! Juvenile:Days 30-44 [Term] id: ZFA:0001410 name: orbital region namespace: zebrafish_anatomy def: "Anatomical cluster that is a anteriolateral part of the cranium and structurally supports the eye." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001410 is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000737 ! cranium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001411 name: sclerotic bone namespace: zebrafish_anatomy def: "A pair of small dish-shaped bones that cap the anterior and posterior margin of the eyeball. The sclerotic bones also called scleral ossicles form from the scleral cartilage between the sclera and the optic choroid. The ossicles develop via unilateral perichondral ossification of the scleral cartilage from two centers opposite one another in the eye." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-070629-20] synonym: "scleral ossicle" EXACT [] synonym: "sclerotic bones" EXACT PLURAL [] xref: TAO:0001411 is_a: ZFA:0001591 ! endochondral bone relationship: develops_from ZFA:0001509 ! sclerotic cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001410 ! orbital region relationship: part_of ZFA:0001424 ! chondrocranium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001412 name: epiotic namespace: zebrafish_anatomy alt_id: ZFA:0000659 def: "Cartilage bone that contacts the pterotic anteriorly, the supraoccipital and parietal dorsally, and the exoccipital ventrally. The epiotic enclose the posterior semicircular canal of the inner ear and contribute to the hind margin of the cranium." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "epioccipital" EXACT [] xref: TAO:0001412 is_a: ZFA:0001591 ! endochondral bone relationship: develops_from ZFA:0001500 ! auditory capsule relationship: end ZFS:0000044 ! Adult relationship: overlaps ZFA:0005889 ! epiotic-posttemporal joint relationship: overlaps ZFA:0005891 ! epiotic-parietal joint relationship: part_of ZFA:0000189 ! otic region relationship: part_of ZFA:0001424 ! chondrocranium relationship: part_of ZFA:0001580 ! neurocranium relationship: start ZFS:0000041 ! Larval:Days 21-29 [Term] id: ZFA:0001414 name: occipital region namespace: zebrafish_anatomy def: "Anatomical cluster that is located in the posterior region of the cranium and forms the margin of the foramen magnum and occipital condyle." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "basicranial region" EXACT [] xref: TAO:0001414 is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000737 ! cranium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001415 name: pelvic radial 2 namespace: zebrafish_anatomy def: "Second radial of the pelvic fin." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "pelvic radials 2" EXACT PLURAL [] xref: TAO:0001415 is_a: ZFA:0000508 ! pelvic radial relationship: develops_from ZFA:0001541 ! pelvic radial 2 cartilage relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001416 name: pelvic radial 3 namespace: zebrafish_anatomy def: "Third radial of the pelvic fin." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "pelvic radials 3" EXACT PLURAL [] xref: TAO:0001416 is_a: ZFA:0000508 ! pelvic radial relationship: develops_from ZFA:0001540 ! pelvic radial 3 cartilage relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001417 name: pelvic radial 1 namespace: zebrafish_anatomy def: "First radial of the pelvic fin." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "pelvic radials 1" EXACT PLURAL [] xref: TAO:0001417 is_a: ZFA:0000508 ! pelvic radial relationship: develops_from ZFA:0001542 ! pelvic radial 1 cartilage relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001418 name: dorsal fin lepidotrichium namespace: zebrafish_anatomy def: "Lepidotrichium which is part of the dorsal fin. Bony, bilaterally paired segmented dermal ossification extending distally from the endoskeletal supports. They develop around actinotrichia as part of the dermal exoskeleton." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-031103-13] synonym: "dorsal fin lepidotrichia" EXACT PLURAL [] synonym: "dorsal fin ray" EXACT [] xref: TAO:0001418 is_a: ZFA:0001554 ! lepidotrichium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001124 ! dorsal fin skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001419 name: dorsal fin pterygiophore namespace: zebrafish_anatomy def: "A range of seven to nine rod-like internal median skeletal support structures of the dorsal fin, comprised of both bone and cartilage and found between vertebrae 11 and 18." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-031103-13] synonym: "dorsal fin support" EXACT [] xref: TAO:0001419 is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001124 ! dorsal fin skeleton relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0001420 name: anal fin pterygiophore namespace: zebrafish_anatomy def: "A range of twelve to fourteen rod-like internal median skeletal support structures of the anal fin, comprised of both bone and cartilage and found between vertebrae 14 and 21." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "anal fin radial" RELATED [] xref: TAO:0001420 is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000167 ! anal fin skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001421 name: anal fin lepidotrichium namespace: zebrafish_anatomy def: "Lepidotrichium which is part of the anal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "anal fin lepidotrichia" EXACT PLURAL [] synonym: "anal fin ray" EXACT [] xref: TAO:0001421 is_a: ZFA:0001554 ! lepidotrichium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000167 ! anal fin skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001422 name: hyosymplectic cartilage namespace: zebrafish_anatomy def: "Bilaterally paired large cartilage that articulates with the chondrocranium dorsally, the opercle posteriorly, and the palatoquadrate cartilage anteriorly." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "hyomandibular cartilage" EXACT [] xref: TAO:0001422 is_a: ZFA:0001460 ! pharyngeal arch cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001401 ! dorsal hyoid arch relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0001423 name: parachordal cartilage namespace: zebrafish_anatomy def: "Rod-shaped paired cartilages on either side of the notochord. They unite, forming the base of the chondrocranium and are replaced by the prootic bones." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "parachordal cartilages" EXACT PLURAL [] xref: TAO:0001423 is_a: ZFA:0001461 ! chondrocranium cartilage relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000189 ! otic region relationship: part_of ZFA:0001414 ! occipital region relationship: part_of ZFA:0001580 ! neurocranium relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0001424 name: chondrocranium namespace: zebrafish_anatomy alt_id: ZFA:0000377 def: "Anatomical cluster that is part of the cranium and composed of cartilage and cartilage replacement bones." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "chondocranium" EXACT [] synonym: "neurocranium" RELATED [] xref: TAO:0001424 is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000737 ! cranium relationship: start ZFS:0000032 ! Pharyngula:High-pec [Term] id: ZFA:0001425 name: basal plate cartilage namespace: zebrafish_anatomy synonym: "basal plate cartilages" EXACT PLURAL [] xref: TAO:0001425 is_a: ZFA:0001461 ! chondrocranium cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001423 ! parachordal cartilage relationship: part_of ZFA:0001580 ! neurocranium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001426 name: posterior naris namespace: zebrafish_anatomy def: "Nares that form at 40-44dpf that open to the posterior region of the olfactory pit allowing water to exit the pit." [ZFIN:ZDB-PUB-961014-399] synonym: "excurrent nostril" EXACT [ZFIN:ZDB-PUB-961014-399] synonym: "posterior nares" EXACT PLURAL [] xref: TAO:0001426 is_a: ZFA:0000550 ! naris relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000042 ! Juvenile:Days 30-44 [Term] id: ZFA:0001427 name: anterior naris namespace: zebrafish_anatomy def: "Nares that form at 40-44dpf that open to the anterior region of the olfactory pit allowing water to enter the pit." [ZFIN:ZDB-PUB-961014-399] synonym: "anterior nares" EXACT PLURAL [] synonym: "incurrent nostril" EXACT [ZFIN:ZDB-PUB-961014-399] xref: TAO:0001427 is_a: ZFA:0000550 ! naris relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000042 ! Juvenile:Days 30-44 [Term] id: ZFA:0001428 name: olfactory rosette namespace: zebrafish_anatomy def: "The highly folded olfactory epithelium." [GOC:mh, ISBN:9789812388216, ORCiD:0000-0001-9114-8737] comment: Olfactory epithelium may be part of olfactory rosette. \nThe epithelium exists before becoming folded into the rosette. synonym: "olfactory rosettes" EXACT PLURAL [] xref: TAO:0001428 is_a: ZFA:0001486 ! epithelium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000047 ! peripheral olfactory organ relationship: start ZFS:0000035 ! Larval:Protruding-mouth [Term] id: ZFA:0001429 name: raphe nucleus namespace: zebrafish_anatomy def: "Ventral hindbrain nuclei just caudal to the interpeduncular nucleus." [ZFIN:ZDB-PUB-100202-7] synonym: "median raphe nucleus" EXACT [ZFIN:ZDB-PUB-100202-7] xref: TAO:0001429 is_a: ZFA:0001658 ! hindbrain nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000241 ! midline column relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001430 name: pneumatic duct namespace: zebrafish_anatomy def: "A duct connecting the esophagus to the posterior chamber of the swim bladder." [ZFIN:ZDB-PUB-060306-11] xref: TAO:0001430 is_a: ZFA:0005171 ! duct relationship: continuous_with ZFA:0000204 ! esophagus relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0001431 name: primitive olfactory epithelium namespace: zebrafish_anatomy xref: TAO:0001431 is_a: ZFA:0001486 ! epithelium relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0000048 ! olfactory placode relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001432 name: anterior sclerotic bone namespace: zebrafish_anatomy def: "Sclerotic bone that is located anterior to the eye." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "anterior sclerotic bones" EXACT PLURAL [] xref: TAO:0001432 is_a: ZFA:0001411 ! sclerotic bone relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001433 name: posterior sclerotic bone namespace: zebrafish_anatomy def: "Sclerotic bone that is located posterior to the eye." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "posterior sclerotic bones" EXACT PLURAL [] xref: TAO:0001433 is_a: ZFA:0001411 ! sclerotic bone relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001434 name: floor plate neural tube namespace: zebrafish_anatomy def: "Floor plate that is part of the neural tube." [GOC:mh, GOC:ymb, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-9900-7880] xref: TAO:0001434 is_a: ZFA:0001488 ! multi-tissue structure relationship: develops_from ZFA:0000887 ! floor plate neural rod relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0000022 ! floor plate relationship: part_of ZFA:0001135 ! neural tube relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0001435 name: lateral wall neural tube namespace: zebrafish_anatomy def: "Portion of tissue on the side of the lumen of the neural tube." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] xref: TAO:0001435 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0001135 ! neural tube relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0001436 name: roof plate neural tube region namespace: zebrafish_anatomy def: "Roof plate that is part of the neural tube." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] xref: TAO:0001436 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0001135 ! neural tube relationship: part_of ZFA:0007058 ! roof plate relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0001437 name: ductus communicans namespace: zebrafish_anatomy def: "The constriction between the anterior and posterior chambers of the swim bladder. There does not appear to be an identifiable sphincter in the ductus, and therefore other musculature may regulate its opening." [ZFIN:ZDB-PUB-060306-11] xref: TAO:0001437 is_a: ZFA:0005171 ! duct relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000076 ! swim bladder relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001438 name: coelom namespace: zebrafish_anatomy def: "Anatomical space, part of the trunk that contains the pericardial and pleuroperitoneal cavities." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "body cavity" EXACT [] xref: TAO:0001438 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001115 ! trunk relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001439 name: anatomical system namespace: zebrafish_anatomy def: "Anatomical group that has as its parts distinct anatomical structures interconnected by anatomical structures at a lower level of granularity." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "anatomical systems" EXACT PLURAL [] xref: CARO:0000011 xref: TAO:0001439 is_a: ZFA:0001512 ! anatomical group relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001094 ! whole organism relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001440 name: rhombic lip namespace: zebrafish_anatomy def: "The interface between the dorsal neuroepithelium and the roof plate of the fourth ventricle. The source of a number of migratory neuron populations of the hindbrain." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0001440 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000028 ! Segmentation:26+ somites relationship: part_of ZFA:0000029 ! hindbrain relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001441 name: lower rhombic lip namespace: zebrafish_anatomy def: "Posterior portion of the rhombic lip contained within rhombomeres 2-8. Gives rise to several brainstem nuclei and choroid plexus." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0001441 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000028 ! Segmentation:26+ somites relationship: part_of ZFA:0000069 ! rhombomere 6 relationship: part_of ZFA:0000153 ! rhombomere 8 relationship: part_of ZFA:0000822 ! rhombomere 2 relationship: part_of ZFA:0000823 ! rhombomere 5 relationship: part_of ZFA:0000948 ! rhombomere 3 relationship: part_of ZFA:0000949 ! rhombomere 7 relationship: part_of ZFA:0001032 ! rhombomere 4 relationship: part_of ZFA:0001440 ! rhombic lip relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001442 name: upper rhombic lip namespace: zebrafish_anatomy def: "Anterior-most region of dorsal hindbrain within rhombomere 1, adjacent the midbrain-hindbrain boundary." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0001442 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000028 ! Segmentation:26+ somites relationship: part_of ZFA:0001031 ! rhombomere 1 relationship: part_of ZFA:0001440 ! rhombic lip relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001443 name: choroid plexus namespace: zebrafish_anatomy def: "A tuft of capillaries that project into the ventricles of the brain and secretes cerebral spinal fluid. The choroid plexus is covered by a cuboidal epithelium which maintains the integrity of the blood-brain barrier." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0001443 is_a: ZFA:0000099 ! brain vasculature relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000008 ! brain relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001444 name: choroid plexus third ventricle namespace: zebrafish_anatomy def: "Choroid plexus that is part of the third ventricle." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "diencephalic choroid plexus " EXACT [] xref: TAO:0001444 is_a: ZFA:0001443 ! choroid plexus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000161 ! third ventricle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001445 name: choroid plexus tectal ventricle namespace: zebrafish_anatomy def: "Choroid plexus that is part of the tectal ventricle." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "choroid plexus tectal ventricles" EXACT PLURAL [] xref: TAO:0001445 is_a: ZFA:0001443 ! choroid plexus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000159 ! tectal ventricle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001446 name: choroid plexus fourth ventricle namespace: zebrafish_anatomy def: "Choroid plexus that is part of the fourth ventricle." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0001446 is_a: ZFA:0001443 ! choroid plexus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000110 ! fourth ventricle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001447 name: choroid plexus telencephalic ventricle namespace: zebrafish_anatomy def: "Choroid plexus that is part of the telencephalic ventricle." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0001447 is_a: ZFA:0001443 ! choroid plexus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000696 ! telencephalic ventricle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001448 name: ultimobranchial body namespace: zebrafish_anatomy def: "Glands that produce calcitonin. In adult fish the glands lie as two groups of follicles at the transverse septum close to the sinus venosus." [ZFIN:ZDB-PUB-060517-11] synonym: "ultimobranchial bodies" EXACT PLURAL [] xref: TAO:0001448 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001158 ! endocrine system relationship: start ZFS:0000034 ! Hatching:Pec-fin [Term] id: ZFA:0001449 name: mesenchyme pelvic fin namespace: zebrafish_anatomy def: "Mesenchyme that is part of the pelvic fin." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "mesenchyme pelvic fins" EXACT PLURAL [] xref: TAO:0001449 is_a: ZFA:0000393 ! mesenchyme relationship: develops_from ZFA:0001386 ! mesoderm pelvic fin bud relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001184 ! pelvic fin relationship: start ZFS:0000042 ! Juvenile:Days 30-44 [Term] id: ZFA:0001450 name: apical ectodermal ridge pelvic fin namespace: zebrafish_anatomy def: "Apical ectodermal ridge that is part of the pelvic fin." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "apical ectodermal ridge pelvic fins" EXACT PLURAL [] xref: TAO:0001450 is_a: ZFA:0001702 ! apical ectodermal ridge relationship: develops_from ZFA:0001385 ! apical ectodermal ridge pelvic fin bud relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0001184 ! pelvic fin relationship: start ZFS:0000042 ! Juvenile:Days 30-44 [Term] id: ZFA:0001451 name: zone of polarizing activity pectoral fin bud namespace: zebrafish_anatomy def: "A small group of mesodermal cells located at the posterior margin of the developing fin bud. The ZPA is thought to produce retinoic acid and thereby provides positional information to the developing bud." [ZFIN:ZDB-PUB-060616-55] synonym: "ZPA" RELATED [] xref: TAO:0001451 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000030 ! Pharyngula:Prim-15 relationship: part_of ZFA:0000789 ! mesoderm pectoral fin bud relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001452 name: zone of polarizing activity pelvic fin bud namespace: zebrafish_anatomy def: "A small group of mesodermal cells located at the posterior margin of the developing fin bud. The ZPA is thought to produce retinoic acid and thereby provides positional information to the developing bud." [ZFIN:ZDB-PUB-060616-55] synonym: "ZPA" RELATED [] xref: TAO:0001452 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0001386 ! mesoderm pelvic fin bud relationship: start ZFS:0000040 ! Larval:Days 14-20 [Term] id: ZFA:0001453 name: pectoral fin field namespace: zebrafish_anatomy def: "Embryonic region that develops into the pectoral fin bud." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "pectoral fin fields" EXACT PLURAL [] xref: TAO:0001453 is_a: ZFA:0001105 ! embryonic structure relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0005042 ! posterior lateral plate mesoderm relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0001454 name: pelvic fin field namespace: zebrafish_anatomy def: "Portion of tissue in the pelvic region that develops into the pelvic fin bud." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "pelvic fin fields" EXACT PLURAL [] xref: TAO:0001454 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000040 ! Larval:Days 14-20 relationship: part_of ZFA:0005042 ! posterior lateral plate mesoderm relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001455 name: scapulocoracoid namespace: zebrafish_anatomy def: "The cartilage from which both the scapula and coracoid develop." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "coraco-scapular cartilage" EXACT [] synonym: "scapulo-coracoid cartilage" EXACT [] xref: TAO:0001455 is_a: ZFA:0000257 ! pectoral fin cartilage relationship: end ZFS:0000041 ! Larval:Days 21-29 relationship: part_of ZFA:0000407 ! pectoral girdle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001456 name: pectoral fin endoskeletal disc namespace: zebrafish_anatomy def: "A plate-like chondrogenic condensation within the pectoral fin, which subdivides into individual radials by decomposition of extracellular matrix in the inter-radial mesenchyme (Grandel and Schulte-Merker, 1998)." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "fin plate cartilage" EXACT [] xref: TAO:0001456 is_a: ZFA:0000257 ! pectoral fin cartilage relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000036 ! Larval:Day 4 [Term] id: ZFA:0001457 name: postcranial axial cartilage namespace: zebrafish_anatomy def: "Cartilage which is part of the axial skeleton." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "postcranial axial cartilages" EXACT PLURAL [] xref: TAO:0001457 is_a: ZFA:0001501 ! cartilage element relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000317 ! postcranial axial skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001458 name: cranial cartilage namespace: zebrafish_anatomy def: "Cartilage which is part of the cranium." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "cranial cartilages" EXACT PLURAL [] xref: TAO:0001458 is_a: ZFA:0001501 ! cartilage element relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000737 ! cranium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001459 name: pelvic fin cartilage namespace: zebrafish_anatomy def: "Cartilage which is part of the pelvic fin." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "pelvic fin cartilages" EXACT PLURAL [] xref: TAO:0001459 is_a: ZFA:0001543 ! paired fin cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001387 ! pelvic fin skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001460 name: pharyngeal arch cartilage namespace: zebrafish_anatomy synonym: "pharyngeal arch cartilages" EXACT PLURAL [] synonym: "splanchnocranium cartilage" EXACT [] xref: TAO:0001460 is_a: ZFA:0001458 ! cranial cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001216 ! splanchnocranium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001461 name: chondrocranium cartilage namespace: zebrafish_anatomy synonym: "neurocranium cartilage" EXACT [] xref: TAO:0001461 is_a: ZFA:0001458 ! cranial cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001424 ! chondrocranium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001462 name: somite border namespace: zebrafish_anatomy def: "Anatomical surface separating somites." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "somite border cell" EXACT PLURAL [] synonym: "somite boundary" RELATED [] xref: TAO:0001462 is_a: ZFA:0005594 ! anatomical surface relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000155 ! somite relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0001463 name: melanophore stripe namespace: zebrafish_anatomy def: "Surface structure composed of an array of melanophores arranged in a stripe. Stripes are oriented from rostral to caudal." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "melanophore stripes" EXACT PLURAL [] xref: TAO:0001463 is_a: ZFA:0000292 ! surface structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000368 ! integument relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001464 name: retinal outer nuclear layer namespace: zebrafish_anatomy def: "The layer within the retina where the photoreceptor cell bodies reside." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "retinal outer nuclear layers" EXACT PLURAL [] xref: TAO:0001464 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000046 ! retinal neural layer relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001465 name: photoreceptor inner segment layer namespace: zebrafish_anatomy def: "Layer of the retina composed of the inner segments of the photoreceptor cells." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "photoreceptor inner segment layers" EXACT PLURAL [] xref: TAO:0001465 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000143 ! retinal photoreceptor layer relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001466 name: photoreceptor outer segment layer namespace: zebrafish_anatomy def: "Layer of the retina composed of the outer segments of the photoreceptor cells. The photoreceptor outer segment is a specialized primary cilium consisting of a microtubule-based axoneme and regular stacks of membrane folds or disks containing the photopigments (opsins) required for the phototransduction cascade." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-110811-12] synonym: "photoreceptor outer segment layers" EXACT PLURAL [] xref: TAO:0001466 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000143 ! retinal photoreceptor layer relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001467 name: pharyngeal mesoderm namespace: zebrafish_anatomy xref: TAO:0001467 is_a: ZFA:0000041 ! mesoderm relationship: end ZFS:0000030 ! Pharyngula:Prim-15 relationship: part_of ZFA:0000056 ! pharynx relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001468 name: anterior lateral line system namespace: zebrafish_anatomy def: "The anterior lateral line system develops from cranial ectodermal placodes, situated between the eye and the ear, that give rise to both the neuromasts and the anterior lateral line sensory nerves that innervate the neuromasts. The anterior lateral line system consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head of all fishes and most amphibians and are innervated by several lateral line nerves, which project to the hindbrain. The anterior lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance." [GOC:ymb, ORCiD:0000-0002-9900-7880] xref: TAO:0001468 is_a: ZFA:0000034 ! lateral line system relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001469 name: lateral line namespace: zebrafish_anatomy def: "The lateral line consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head and body of all fishes and most amphibians. The lateral line develops from cranial ectodermal placodes situated behind the ear and between the eye and ear." [DOI:10.1159/000115896, GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "lateral lines" EXACT PLURAL [] xref: TAO:0001469 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000034 ! lateral line system relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0001470 name: anterior lateral line namespace: zebrafish_anatomy def: "The anterior lateral line consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head of all fishes and most amphibians. The anterior lateral line develops from cranial ectodermal placodes situated between the eye and ear." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "anterior lateral lines" EXACT PLURAL [] xref: TAO:0001470 is_a: ZFA:0001469 ! lateral line relationship: develops_from ZFA:0005117 ! anterior lateral line primordium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001468 ! anterior lateral line system relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0001471 name: posterior lateral line system namespace: zebrafish_anatomy def: "The posterior lateral line system develops from cranial ectodermal placodes, situated behind the ear, that give rise to both the neuromasts and the posterior lateral line sensory nerves that innervate the neuromasts. The posterior lateral line system consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head of all fishes and most amphibians. The neuromasts are innervated by several lateral line nerves, which project primarily to the hindbrain. The posterior mechanosensory lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance." [GOC:ymb, ORCiD:0000-0002-9900-7880] xref: TAO:0001471 is_a: ZFA:0000034 ! lateral line system relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001472 name: anterior lateral line neuromast namespace: zebrafish_anatomy def: "Neuromast that is part of the anterior lateral line. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576] synonym: "neuromast anterior" EXACT [] xref: TAO:0001472 is_a: ZFA:0000243 ! neuromast relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001470 ! anterior lateral line relationship: start ZFS:0000032 ! Pharyngula:High-pec [Term] id: ZFA:0001473 name: deep blastomere namespace: zebrafish_anatomy def: "Cells (completely cleaved), located underneath the superficial blastomeres and internal to the marginal blastomeres." [ZFIN:ZDB-PUB-961014-576] subset: cell_slim synonym: "deep blastomeres" EXACT PLURAL [] xref: TAO:0001473 is_a: ZFA:0000093 ! blastomere relationship: end ZFS:0000015 ! Blastula:Dome relationship: start ZFS:0000007 ! Cleavage:64-cell [Term] id: ZFA:0001474 name: presumptive cardinal organ namespace: zebrafish_anatomy is_obsolete: true [Term] id: ZFA:0001475 name: presumptive organ namespace: zebrafish_anatomy is_obsolete: true [Term] id: ZFA:0001476 name: presumptive organ system namespace: zebrafish_anatomy is_obsolete: true [Term] id: ZFA:0001477 name: portion of tissue namespace: zebrafish_anatomy def: "Anatomical structure, that consists of similar cells and intercellular matrix, aggregated according to genetically determined spatial relationships." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: CARO:0000043 xref: TAO:0001477 is_a: ZFA:0000037 ! anatomical structure relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000012 ! Blastula:High [Term] id: ZFA:0001478 name: anatomical cluster namespace: zebrafish_anatomy def: "Anatomical group that has its parts adjacent to one another." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: CARO:0000041 xref: TAO:0001478 is_a: ZFA:0001512 ! anatomical group relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000012 ! Blastula:High [Term] id: ZFA:0001479 name: lateral line nerve namespace: zebrafish_anatomy def: "Cranial nerves that carry afferent and efferent fibers for the lateral line system." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "lateral line nerves" EXACT PLURAL [] xref: TAO:0001479 is_a: ZFA:0007009 ! nerve relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000034 ! lateral line system relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001480 name: dorsal anterior lateral line nerve namespace: zebrafish_anatomy def: "Lateral line nerve that originates within the dorsal anterior lateral line ganglion and innervates the otic, supraorbital, and infraorbital neuromasts." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-000523-3] synonym: "anterodorsal lateral line nerve" EXACT [] synonym: "dorsal anterior lateral line nerves" EXACT PLURAL [] xref: TAO:0001480 is_a: ZFA:0001479 ! lateral line nerve relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000425 ! anterior lateral line nerve relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001481 name: ventral anterior lateral line nerve namespace: zebrafish_anatomy def: "Lateral line nerve that originates within the ventral anterior lateral line ganglion and innervates the mandibular and opercular neuromasts." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "anteroventral lateral line nerve" EXACT [] synonym: "ventral anterior lateral line nerves" EXACT PLURAL [] xref: TAO:0001481 is_a: ZFA:0001479 ! lateral line nerve relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000425 ! anterior lateral line nerve relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001482 name: middle lateral line nerve namespace: zebrafish_anatomy def: "Nerve fibers originating from the middle lateral line ganglion. These fibers innervate the middle lateral line." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "middle lateral line nerves" EXACT PLURAL [] xref: TAO:0001482 is_a: ZFA:0001479 ! lateral line nerve relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000175 ! posterior lateral line nerve relationship: part_of ZFA:0005114 ! middle lateral line system relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001483 name: middle lateral line ganglion namespace: zebrafish_anatomy def: "The middle lateral line ganglion develops from a cranial ectodermal placode and contains sensory neurons that innervate the middle lateral line." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "middle lateral line ganglia" EXACT PLURAL [] xref: TAO:0001483 is_a: ZFA:0000120 ! lateral line ganglion relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005114 ! middle lateral line system relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001484 name: superficial blastomere namespace: zebrafish_anatomy def: "Cells (completely cleaved), located at the surface of the blastodisc, above the deep blastomeres." [ZFIN:ZDB-PUB-961014-576] subset: cell_slim synonym: "superficial blastomeres" EXACT PLURAL [] xref: TAO:0001484 is_a: ZFA:0000093 ! blastomere relationship: end ZFS:0000015 ! Blastula:Dome relationship: start ZFS:0000007 ! Cleavage:64-cell [Term] id: ZFA:0001485 name: basal lamina namespace: zebrafish_anatomy def: "Acellular anatomical structure that consists of a thin sheet of fibrous proteins that underlie and support the cells of an epithelium. It separates the cells of an epithelium from any underlying tissue." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "basal laminae" EXACT PLURAL [] xref: CARO:0000065 xref: TAO:0001485 is_a: ZFA:0000382 ! acellular anatomical structure relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001486 name: epithelium namespace: zebrafish_anatomy def: "Portion of tissue, that consists of one or more layers of epithelial cells connected to each other by cell junctions and which is underlain by a basal lamina." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: CARO:0000066 xref: TAO:0001486 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001487 name: portion of organism substance namespace: zebrafish_anatomy def: "Material anatomical entity in a gaseous, liquid, semisolid or solid state; produced by anatomical structures or derived from inhaled and ingested substances that have been modified by anatomical structures as they pass through the body." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: CARO:0000004 xref: TAO:0001487 is_a: ZFA:0100000 ! zebrafish anatomical entity relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001094 ! whole organism relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001488 name: multi-tissue structure namespace: zebrafish_anatomy def: "Anatomical structure that has as its parts two or more portions of tissue of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona-fide boundaries from other distinct structural units of different types." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "multi-tissue structures" EXACT PLURAL [] xref: CARO:0000055 xref: TAO:0001488 is_a: ZFA:0000037 ! anatomical structure relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001489 name: compound organ component namespace: zebrafish_anatomy def: "Multi-tissue structure that is part of a compound organ." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "compound organ components" EXACT PLURAL [] xref: CARO:0000019 xref: TAO:0001489 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001490 name: cavitated compound organ namespace: zebrafish_anatomy def: "Compound organ that contains one or more macroscopic anatomical spaces." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "cavitated compound organs" EXACT PLURAL [] xref: CARO:0000072 xref: TAO:0001490 is_a: ZFA:0000496 ! compound organ relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001491 name: solid compound organ namespace: zebrafish_anatomy def: "Compound organ that does not contain macroscopic anatomical spaces." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "solid compound organs" EXACT PLURAL [] xref: CARO:0000074 xref: TAO:0001491 is_a: ZFA:0000496 ! compound organ relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001492 name: simple organ namespace: zebrafish_anatomy def: "Multi-tissue structure that is not part of a compound organ." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "simple organs" EXACT PLURAL [] xref: CARO:0000021 xref: TAO:0001492 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001493 name: atypical epithelium namespace: zebrafish_anatomy def: "Epithelium that consists of epithelial cells not arranged in one or more layers." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "atypical epithelia" EXACT PLURAL [] xref: CARO:0000071 xref: TAO:0001493 is_a: ZFA:0001486 ! epithelium relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001494 name: multilaminar epithelium namespace: zebrafish_anatomy def: "Epithelium that consists of more than one layer of epithelial cells." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: CARO:0000069 xref: TAO:0001494 is_a: ZFA:0001486 ! epithelium relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001495 name: unilaminar epithelium namespace: zebrafish_anatomy def: "Epithelium that consists of a single layer of epithelial cells." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "unilaminar epithelia" EXACT PLURAL [] xref: CARO:0000073 xref: TAO:0001495 is_a: ZFA:0001486 ! epithelium relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001496 name: simple columnar epithelium namespace: zebrafish_anatomy def: "Unilaminar epithelium that consists of a single layer of columnar cells." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "simple columnar epithelia" EXACT PLURAL [] xref: CARO:0000068 xref: TAO:0001496 is_a: ZFA:0001495 ! unilaminar epithelium relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001497 name: simple cuboidal epithelium namespace: zebrafish_anatomy def: "Unilaminar epithelium that consists of a single layer of cuboidal cells." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "simple cuboidal epithelia" EXACT PLURAL [] xref: CARO:0000067 xref: TAO:0001497 is_a: ZFA:0001495 ! unilaminar epithelium relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001498 name: simple squamous epithelium namespace: zebrafish_anatomy def: "Unilaminar epithelium that consists of a single layer of squamous cells." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "simple squamous epithelia" EXACT PLURAL [] xref: CARO:0000070 xref: TAO:0001498 is_a: ZFA:0001495 ! unilaminar epithelium relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001499 name: esophageal epithelium namespace: zebrafish_anatomy def: "Simple columnar epithelium that lines the esophagus." [ZFIN:ZDB-PUB-070426-1] xref: TAO:0001499 is_a: ZFA:0001496 ! simple columnar epithelium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000204 ! esophagus relationship: part_of ZFA:0005123 ! gut epithelium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001500 name: auditory capsule namespace: zebrafish_anatomy def: "Bilaterally paired cartilage encasing the semicircular canals of the inner ear." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "otic capsule" EXACT [] xref: TAO:0001500 is_a: ZFA:0001461 ! chondrocranium cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001580 ! neurocranium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001501 name: cartilage element namespace: zebrafish_anatomy def: "Skeletal element that is composed of cartilage tissue and may be permanent or transient." [VSAO:curator] synonym: "cartilages" EXACT PLURAL [] xref: TAO:0001501 xref: VSAO:0000000 is_a: ZFA:0005494 ! skeletal element relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001502 name: epiphyseal bar namespace: zebrafish_anatomy def: "Bilaterally paired medial bar of cartilage formed at midorbit through medial chondrification from triangles of cartilage that later form the junction of the taeniae marginales anterior, taeniae marginales posterior and the epiphyseal bar." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001502 is_a: ZFA:0001461 ! chondrocranium cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001580 ! neurocranium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001503 name: lamina orbitonasalis namespace: zebrafish_anatomy def: "Cranial cartilage which is bilaterally paired and develops as a dorsal plate-like projection of the anteriolateral ethmoid plate, which are oriented perpendicular to the ethmoid plate. It fuses dorsally to the taenia marginalis anterior, and it joins the ethmoid cartilage medially." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "laminas orbitonasalis" EXACT PLURAL [] xref: TAO:0001503 is_a: ZFA:0001461 ! chondrocranium cartilage relationship: end ZFS:0000039 ! Larval:Days 7-13 relationship: part_of ZFA:0001580 ! neurocranium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001504 name: occipital arch cartilage namespace: zebrafish_anatomy def: "Cranial cartilage which is a paired anterodorsal projection of the posterior end of the parachordal cartilage. It lies lateral to the notochord, just anterior to the posterior tip of the otic capsule. The bilaterally paired occipital arch cartilages fuse anterodorsally to the posterior edges of the auditory capsules and meet medially as the tectum synoticum (by 12 dpf)." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "occipital arch cartilages" EXACT PLURAL [] xref: TAO:0001504 is_a: ZFA:0001461 ! chondrocranium cartilage relationship: end ZFS:0000038 ! Larval:Day 6 relationship: part_of ZFA:0001580 ! neurocranium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001505 name: taenia marginalis anterior namespace: zebrafish_anatomy def: "Cartilage bar (bilaterally paired) that grows anteroventrally from the epiphyseal bar to join the anteriolateral edge of the ethmoid plate." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "orbital cartilage" RELATED [] synonym: "taeniae marginales anterior" EXACT PLURAL [] xref: TAO:0001505 is_a: ZFA:0001461 ! chondrocranium cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000290 ! sphenoid region relationship: part_of ZFA:0001580 ! neurocranium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001506 name: tectum synoticum namespace: zebrafish_anatomy def: "Unpaired thin dorsal sheet of cartilage that partially covers the posterior chondrocranium." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001506 is_a: ZFA:0001461 ! chondrocranium cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001580 ! neurocranium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001507 name: trabecula cranii namespace: zebrafish_anatomy def: "Paired thin medially aligned bar of cartilage that extends from the anterior end of the chondrocranium to just anterior to the anterior end of the notochord. The posterior ends of the trabeculae cranii are continuous with the parachordal cartilages, and they enclose the hypophyseal fenestra." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "trabeculae cranii" EXACT PLURAL [] xref: TAO:0001507 is_a: ZFA:0001461 ! chondrocranium cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001321 ! neurocranial trabecula relationship: part_of ZFA:0001580 ! neurocranium relationship: start ZFS:0000032 ! Pharyngula:High-pec [Term] id: ZFA:0001508 name: trabecula communis namespace: zebrafish_anatomy def: "Cartilage formed via medial fusion between bilaterally paired trabecula cranii." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "trabecular bar" EXACT [] xref: TAO:0001508 is_a: ZFA:0001461 ! chondrocranium cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001321 ! neurocranial trabecula relationship: part_of ZFA:0001580 ! neurocranium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001509 name: sclerotic cartilage namespace: zebrafish_anatomy def: "Bilaterally paired thin continuous band of cartilage that sagitally encircles the eye. It lies between t lies between the sclera and the optic choroid." [ZFIN:ZDB-PUB-070629-20] synonym: "scleral cartilage" RELATED [] synonym: "sclerotic cartilages" EXACT PLURAL [] xref: TAO:0001509 is_a: ZFA:0001461 ! chondrocranium cartilage relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0001510 name: basihyal cartilage namespace: zebrafish_anatomy def: "Pharyngeal arch cartilage that is median and is the anterior-most cartilage of the ventral hyoid arch. It chondrifies between the anterior tips of the ceratohyal cartilages, anterior to the first copula." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "basihyal" RELATED [] xref: TAO:0001510 is_a: ZFA:0001460 ! pharyngeal arch cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001402 ! ventral hyoid arch relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001511 name: interhyal cartilage namespace: zebrafish_anatomy alt_id: ZFA:0000218 def: "The interhyal is a small rod-like element that connects the ventral and dorsal parts of the hyoid arch. It articulates laterally with the posterior end of the epihyal and medially at the cartilaginous junction between the hyomandibula and the symplectic. It remains cartilaginous in adult zebrafish and other cypriniforms." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "interhyal bone" EXACT [] synonym: "stylohyal" EXACT [] xref: TAO:0001511 is_a: ZFA:0001460 ! pharyngeal arch cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001402 ! ventral hyoid arch relationship: start ZFS:0000034 ! Hatching:Pec-fin [Term] id: ZFA:0001512 name: anatomical group namespace: zebrafish_anatomy alt_id: ZFA:0001255 def: "Anatomical structure consisting of at least two non-overlapping organs, multi-tissue aggregates or portion of tissues or cells of different types that does not constitute an organism, organ, multi-tissue aggregate, or portion of tissue." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: CARO:0000054 xref: TAO:0001512 is_a: ZFA:0000037 ! anatomical structure relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001513 name: dermomyotome namespace: zebrafish_anatomy def: "Epithelial sheet on the external surface of the somite that gives rise to trunk, muscle and dermis." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-060124-14] synonym: "dermomyotomes" EXACT PLURAL [] xref: TAO:0001513 is_a: ZFA:0001486 ! epithelium relationship: develops_from ZFA:0000155 ! somite relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001514 name: bone element namespace: zebrafish_anatomy def: "Skeletal element that is composed of bone tissue." [VSAO:curator] synonym: "bones" EXACT PLURAL [] xref: TAO:0001514 xref: VSAO:0000057 is_a: ZFA:0005494 ! skeletal element relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001515 name: taenia marginalis posterior namespace: zebrafish_anatomy def: "Cartilage bar (bilaterally paired) that is first visible as an anterior extension of the auditory capsule. It grows anteriorly toward the middle of the orbit where it is connected to its mate on the other side by the epiphyseal bar." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "orbital cartilage" RELATED [] synonym: "taeniae marginales posterior" EXACT PLURAL [] xref: TAO:0001515 is_a: ZFA:0001461 ! chondrocranium cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000290 ! sphenoid region relationship: part_of ZFA:0001580 ! neurocranium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001516 name: ceratobranchial cartilage namespace: zebrafish_anatomy def: "Pharyngeal arch cartilage that forms the largest skeletal element of the ventral branchial arches." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "ceratobranchial cartilages" EXACT PLURAL [] xref: TAO:0001516 is_a: ZFA:0001460 ! pharyngeal arch cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000095 ! pharyngeal arch 3-7 skeleton relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0001517 name: ceratobranchial 2 cartilage namespace: zebrafish_anatomy def: "Ceratobranchial cartilage that is bilaterally paired and articulates laterally with epibranchial 2 cartilage or bone." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001517 is_a: ZFA:0001516 ! ceratobranchial cartilage relationship: end ZFS:0000039 ! Larval:Days 7-13 relationship: part_of ZFA:0001231 ! pharyngeal arch 4 skeleton relationship: start ZFS:0000034 ! Hatching:Pec-fin [Term] id: ZFA:0001518 name: ceratobranchial 3 cartilage namespace: zebrafish_anatomy def: "Ceratobranchial cartilage that is bilaterally paired and articulates laterally with epibranchial 3 cartilage or bone." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001518 is_a: ZFA:0001516 ! ceratobranchial cartilage relationship: end ZFS:0000039 ! Larval:Days 7-13 relationship: part_of ZFA:0001232 ! pharyngeal arch 5 skeleton relationship: start ZFS:0000034 ! Hatching:Pec-fin [Term] id: ZFA:0001519 name: ceratobranchial 4 cartilage namespace: zebrafish_anatomy def: "Ceratobranchial cartilage that is bilaterally paired and articulates laterally with epibranchial 4 cartilage or bone." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001519 is_a: ZFA:0001516 ! ceratobranchial cartilage relationship: end ZFS:0000039 ! Larval:Days 7-13 relationship: part_of ZFA:0001230 ! pharyngeal arch 6 skeleton relationship: start ZFS:0000034 ! Hatching:Pec-fin [Term] id: ZFA:0001520 name: ceratobranchial 1 cartilage namespace: zebrafish_anatomy def: "Ceratobranchial cartilage that forms between hypobranchial 1 and epibranchial 1." [TAO:curator] xref: TAO:0001520 is_a: ZFA:0001516 ! ceratobranchial cartilage relationship: end ZFS:0000039 ! Larval:Days 7-13 relationship: part_of ZFA:0001228 ! pharyngeal arch 3 skeleton relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0001521 name: ceratobranchial 5 cartilage namespace: zebrafish_anatomy def: "Ceratobranchial cartilage that is the most posterior, bilaterally paired ventral pharyngeal arch cartilage." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001521 is_a: ZFA:0001516 ! ceratobranchial cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001229 ! pharyngeal arch 7 skeleton relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0001522 name: hypobranchial cartilage namespace: zebrafish_anatomy def: "Small rod-like cartilage that forms between the median copulae and the ceratobranchial cartilages." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "hypobranchial cartilages" EXACT PLURAL [] xref: TAO:0001522 is_a: ZFA:0001460 ! pharyngeal arch cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000095 ! pharyngeal arch 3-7 skeleton relationship: start ZFS:0000035 ! Larval:Protruding-mouth [Term] id: ZFA:0001523 name: hypobranchial 4 cartilage namespace: zebrafish_anatomy def: "Small cartilage that forms at the anteromedial tip of ceratobranchial 4; these are not obviously present in mature specimens, due either to resorption or fusion to the cartilaginous anterior tip of ceratobranchial 4." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "hypobranchial 4 cartilages" EXACT PLURAL [] xref: TAO:0001523 is_a: ZFA:0001522 ! hypobranchial cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001230 ! pharyngeal arch 6 skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001524 name: hypobranchial 1 cartilage namespace: zebrafish_anatomy def: "Small cartilage that forms at the anteromedial tip of ceratobranchial 1, lateral to copula 1." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "hypobranchial 1 cartilages" EXACT PLURAL [] xref: TAO:0001524 is_a: ZFA:0001522 ! hypobranchial cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001228 ! pharyngeal arch 3 skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001525 name: hypobranchial 2 cartilage namespace: zebrafish_anatomy def: "Small cartilage that forms at the anteromedial tip of ceratobranchial 2, lateral to copula 1." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "hypobranchial 2 cartilages" EXACT PLURAL [] xref: TAO:0001525 is_a: ZFA:0001522 ! hypobranchial cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001231 ! pharyngeal arch 4 skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001526 name: hypobranchial 3 cartilage namespace: zebrafish_anatomy def: "Small cartilage that forms at the anteromedial tip of ceratobranchial 3, lateral to copula 1." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "hypobranchial 3 cartilages" EXACT PLURAL [] xref: TAO:0001526 is_a: ZFA:0001522 ! hypobranchial cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001232 ! pharyngeal arch 5 skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001527 name: epibranchial cartilage namespace: zebrafish_anatomy def: "Pharyngeal arch cartilage that is bilaterally paired small rod-like cartilage which articulates laterally with ceratobranchial cartilage or bone." [TAO:curator] synonym: "epibranchial cartilages" EXACT PLURAL [] xref: TAO:0001527 is_a: ZFA:0001460 ! pharyngeal arch cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000095 ! pharyngeal arch 3-7 skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001528 name: epibranchial 1 cartilage namespace: zebrafish_anatomy def: "Epibranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 1 cartilage or bone and the medial end of pharyngobranchial 1." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001528 is_a: ZFA:0001527 ! epibranchial cartilage relationship: end ZFS:0000040 ! Larval:Days 14-20 relationship: part_of ZFA:0001228 ! pharyngeal arch 3 skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001529 name: epibranchial 3 cartilage namespace: zebrafish_anatomy def: "Epibranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 3 cartilage or bone and the medial end of pharyngobranchial 3." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001529 is_a: ZFA:0001527 ! epibranchial cartilage relationship: end ZFS:0000039 ! Larval:Days 7-13 relationship: part_of ZFA:0001232 ! pharyngeal arch 5 skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001530 name: epibranchial 2 cartilage namespace: zebrafish_anatomy def: "Epibranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 2 cartilage or bone and the medial end of pharyngobranchial 2." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001530 is_a: ZFA:0001527 ! epibranchial cartilage relationship: end ZFS:0000040 ! Larval:Days 14-20 relationship: part_of ZFA:0001231 ! pharyngeal arch 4 skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001531 name: epibranchial 4 cartilage namespace: zebrafish_anatomy def: "Epibranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 4 cartilage or bone and the medial end of pharyngobranchial 4." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001531 is_a: ZFA:0001527 ! epibranchial cartilage relationship: end ZFS:0000039 ! Larval:Days 7-13 relationship: part_of ZFA:0001230 ! pharyngeal arch 6 skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001532 name: axial bone namespace: zebrafish_anatomy is_obsolete: true consider: ZFA:0000317 [Term] id: ZFA:0001533 name: pharyngobranchial cartilage namespace: zebrafish_anatomy def: "Paired cartilages that project medially from the medial tips of epibranchials." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "pharyngobranchial cartilages" EXACT PLURAL [] xref: TAO:0001533 is_a: ZFA:0001460 ! pharyngeal arch cartilage relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001534 name: pharyngobranchial 3 cartilage namespace: zebrafish_anatomy def: "Paired elongate cartilages that lie posteromedial to epibranchial 2 and medial to epibranchial 3." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "pharyngobranchial 3 cartilages" EXACT PLURAL [] xref: TAO:0001534 is_a: ZFA:0001533 ! pharyngobranchial cartilage relationship: end ZFS:0000040 ! Larval:Days 14-20 relationship: part_of ZFA:0001232 ! pharyngeal arch 5 skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001535 name: median fin cartilage namespace: zebrafish_anatomy synonym: "median fin cartilages" EXACT PLURAL [] xref: TAO:0001535 is_a: ZFA:0001457 ! postcranial axial cartilage relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001536 name: pharyngobranchial 2 cartilage namespace: zebrafish_anatomy def: "Paired disc-like cartilage lying medial to and between the medial tips of epibranchials 1 and 2." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "pharyngobranchial 2 cartilages" EXACT PLURAL [] xref: TAO:0001536 is_a: ZFA:0001533 ! pharyngobranchial cartilage relationship: end ZFS:0000041 ! Larval:Days 21-29 relationship: part_of ZFA:0001231 ! pharyngeal arch 4 skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001537 name: mesocoracoid cartilage namespace: zebrafish_anatomy def: "Cartilage that develops initially on the medial side of the coraco-scapular cartilage." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "mesocorocoid cartilages" EXACT PLURAL [] xref: TAO:0001537 is_a: ZFA:0000257 ! pectoral fin cartilage relationship: end ZFS:0000040 ! Larval:Days 14-20 relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001538 name: pelvic radial cartilage namespace: zebrafish_anatomy def: "Small cartilage that forms at the posterior edge of the basipterygium." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "pelvic radial cartilages" EXACT PLURAL [] xref: TAO:0001538 is_a: ZFA:0001459 ! pelvic fin cartilage relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001539 name: basipterygium cartilage namespace: zebrafish_anatomy def: "Bilaterally paired small, rodlike cartilages on the ventral surface of the abdomen (present at 7.9 mm). Their posterior tips expand laterally, forming L-shaped cartilages. Medially, a posterior spur of cartilage develops, which will later ossify as the ischiac process (Weitzman 1962)." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "basipterygium cartilages" EXACT PLURAL [] xref: TAO:0001539 is_a: ZFA:0001459 ! pelvic fin cartilage relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001540 name: pelvic radial 3 cartilage namespace: zebrafish_anatomy def: "Small cartilage that forms at the posterior and medial edge of the basipterygium." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "pelvic radials 3 cartilages" EXACT PLURAL [] xref: TAO:0001540 is_a: ZFA:0001538 ! pelvic radial cartilage relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001541 name: pelvic radial 2 cartilage namespace: zebrafish_anatomy def: "Small cartilage with a long posterior process and a shorter lateral one that forms at the posterior edge of the basipterygium, between radial cartilages 1 and 2." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "pelvic radials 2 cartilages" EXACT PLURAL [] xref: TAO:0001541 is_a: ZFA:0001538 ! pelvic radial cartilage relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001542 name: pelvic radial 1 cartilage namespace: zebrafish_anatomy def: "Small cartilage that forms at the posterior and lateral edge of the basipterygium." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "pelvic radials 1 cartilages" EXACT PLURAL [] xref: TAO:0001542 is_a: ZFA:0001538 ! pelvic radial cartilage relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001543 name: paired fin cartilage namespace: zebrafish_anatomy def: "Cartilage which is part of one of the paired fins." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "paired fin cartilages" EXACT PLURAL [] xref: TAO:0001543 is_a: ZFA:0001501 ! cartilage element relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000027 ! paired fin skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001544 name: chondrocranium bone namespace: zebrafish_anatomy is_obsolete: true consider: ZFA:0001424 [Term] id: ZFA:0001545 name: cranial bone namespace: zebrafish_anatomy is_obsolete: true consider: ZFA:0000737 [Term] id: ZFA:0001546 name: pharyngeal arch bone namespace: zebrafish_anatomy is_obsolete: true consider: ZFA:0000095 consider: ZFA:0001276 [Term] id: ZFA:0001547 name: dermatocranium bone namespace: zebrafish_anatomy is_obsolete: true consider: ZFA:0000863 [Term] id: ZFA:0001548 name: axial fin bone namespace: zebrafish_anatomy is_obsolete: true consider: ZFA:0001123 [Term] id: ZFA:0001549 name: paired fin bone namespace: zebrafish_anatomy comment: Zebrafish don't have a stomach. is_obsolete: true consider: ZFA:0000027 [Term] id: ZFA:0001550 name: caudal fin lepidotrichium namespace: zebrafish_anatomy def: "Lepidotrichium which is part of the caudal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "caudal fin lepidotrichia" EXACT PLURAL [] synonym: "caudal fin ray" EXACT [] xref: TAO:0001550 is_a: ZFA:0001554 ! lepidotrichium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000862 ! caudal fin skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001551 name: pectoral fin lepidotrichium namespace: zebrafish_anatomy def: "Lepidotrichium which is part of the pectoral fin, forming the pectoral fin skeleton and articulating with the pectoral radials. A pectoral lepidotrichium is composed of two hemitrichia that surround bundles of actinotrichia distally." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "pectoral fin lepidotrichia" EXACT PLURAL [] synonym: "pectoral fin ray" EXACT [] xref: TAO:0001551 is_a: ZFA:0001554 ! lepidotrichium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000943 ! pectoral fin skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001552 name: pelvic fin lepidotrichium namespace: zebrafish_anatomy def: "Lepidotrichium which is part of the pelvic fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "pelvic fin lepidotrichia" EXACT PLURAL [] synonym: "pelvic fin ray" EXACT [] xref: TAO:0001552 is_a: ZFA:0001554 ! lepidotrichium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001387 ! pelvic fin skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001553 name: fin bone namespace: zebrafish_anatomy is_obsolete: true consider: ZFA:0000027 consider: ZFA:0001123 [Term] id: ZFA:0001554 name: lepidotrichium namespace: zebrafish_anatomy def: "Dermal bone that is rod-like, formed and usually contained in a fin membrane, and jointed to or adjacent to distal radials. They are bilaterally paired. Lepidotrichia are formed from paired hemitrichia surrounding actinotrichia. There are usually two more lepidotrichia than distal radials." [ZFIN:ZDB-PUB-031103-13] synonym: "fin ray" EXACT [] synonym: "lepidotrichia" EXACT PLURAL [] xref: TAO:0001554 is_a: ZFA:0001590 ! dermal bone relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001555 name: epibranchial ganglion namespace: zebrafish_anatomy def: "Cranial ganglion which develops from an epibranchial placode." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "epibranchial ganglia" EXACT PLURAL [] xref: TAO:0001555 is_a: ZFA:0000013 ! cranial ganglion relationship: develops_from ZFA:0001294 ! epibranchial placode relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001556 name: sympathetic chain ganglion namespace: zebrafish_anatomy def: "Trunk ganglion which is part of a bilaterally paired set of sympathetic ganglia located anterior and lateral to the spinal cord." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "paravertebral ganglion" EXACT [] xref: TAO:0001556 is_a: ZFA:0001573 ! trunk ganglion relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001576 ! sympathetic nervous system relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001557 name: pronephric glomerulus namespace: zebrafish_anatomy def: "Paired highly vascularized structures of the pronephros which are fused at the midline. Responsible for blood filtration and begins to function between 40 and 48hpf." [ZFIN:ZDB-PUB-000606-4] synonym: "pronephric glomera" EXACT [] synonym: "pronephric glomeruli" EXACT PLURAL [] synonym: "pronephric glomus " EXACT [] xref: TAO:0001557 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000039 ! Larval:Days 7-13 relationship: part_of ZFA:0000151 ! pronephros relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001558 name: pronephric tubule namespace: zebrafish_anatomy def: "Bilaterally paired tubes connecting the pronephric glomeruli to the pronephric ducts. In zebrafish and other teleosts, the pronephric nephron and tubules form after the pronephric duct, connecting to the anterior-most tip of the pronephric ducts." [ZFIN:ZDB-PUB-000606-4] synonym: "ciliated neck segment" EXACT [] xref: TAO:0001558 is_a: ZFA:0005171 ! duct relationship: end ZFS:0000039 ! Larval:Days 7-13 relationship: part_of ZFA:0000151 ! pronephros relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001559 name: vertebral column namespace: zebrafish_anatomy xref: TAO:0001559 is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000317 ! postcranial axial skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001560 name: hypural 1 namespace: zebrafish_anatomy def: "Ventral most hypural of the caudal fin. Supports the lower lobe of the caudal fin." [ZFIN:ZDB-PUB-031103-13] xref: TAO:0001560 is_a: ZFA:0000364 ! hypural relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000036 ! Larval:Day 4 [Term] id: ZFA:0001561 name: hypural 2 namespace: zebrafish_anatomy def: "Hypural of the caudal fin dorsal to hypural 1. Supports the lower lobe of the caudal fin." [ZFIN:ZDB-PUB-031103-13] xref: TAO:0001561 is_a: ZFA:0000364 ! hypural relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000037 ! Larval:Day 5 [Term] id: ZFA:0001562 name: hypural 3 namespace: zebrafish_anatomy def: "Hypural dorsal to hypural 2 that supports the upper lobe of the caudal fin." [ZFIN:ZDB-PUB-031103-13] xref: TAO:0001562 is_a: ZFA:0000364 ! hypural relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000038 ! Larval:Day 6 [Term] id: ZFA:0001563 name: hypural 4 namespace: zebrafish_anatomy def: "Hypural dorsal to hypural 3 that supports the upper lobe of the caudal fin." [ZFIN:ZDB-PUB-031103-13] xref: TAO:0001563 is_a: ZFA:0000364 ! hypural relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0001564 name: hypural 5 namespace: zebrafish_anatomy def: "Dorsal-most hypural, that supports the upper lobe of the caudal fin." [ZFIN:ZDB-PUB-031103-13] xref: TAO:0001564 is_a: ZFA:0000364 ! hypural relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0001565 name: oocyte stage II namespace: zebrafish_anatomy def: "Oocyte part of stage II ovarian follicle. The stage II oocytes are characterized by the presence of cortical alveoli, a tripartite zona radiata (vitelline envelope), and a central germinal vesicle." [GOC:cvs, GOC:mh, ORCiD:0000-0001-9114-8737, ORCID:0000-0002-2244-7917, ZFIN:ZDB-PUB-140513-387] comment: In stage II (cortical alveolus stage), oocytes are distinguished by the appearance of variably sized cortical alveoli and the vitelline envelope becomes prominent, ZDB-PUB-961014-1020. subset: cell_slim synonym: "cortical-alveolar oocyte" EXACT [] synonym: "oocytes stage II" EXACT PLURAL [] synonym: "previtellogenic oocyte" RELATED [ZFIN:ZDB-PUB-140513-387] synonym: "Stage 2 oocyte" EXACT [] xref: TAO:0001565 is_a: ZFA:0001109 ! oocyte relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001265 ! ovarian follicle stage II relationship: start ZFS:0000043 ! Juvenile:Days 45-89 [Term] id: ZFA:0001566 name: oocyte stage III namespace: zebrafish_anatomy def: "Oocyte part of stage III ovarian follicle. Stage III oocytes contain internal vitellus droplets and peripheral yolk vesicles." [GOC:CVS, GOC:mh, ORCiD:0000-0001-9114-8737, ORCID:0000-0002-2244-7917, ZFIN:ZDB-PUB-140513-387] comment: In stage III (vitellogenesis), yolk proteins appear in oocytes and yolk bodies with crystalline yolk accrue during this major growth stage. Oocytes develop the capacity to respond in vitro to the steroid 17, 20-dihydroxy-4-pregnen-3-one (DHP) by undergoing oocyte maturation ZDB-PUB-961014-1020. subset: cell_slim synonym: "oocytes stage III" EXACT PLURAL [] synonym: "postvitellogenic oocyte" RELATED [ZFIN:ZDB-PUB-140513-387] synonym: "Stage 3 oocyte" EXACT [] synonym: "vitellogenic oocytes" EXACT [] xref: TAO:0001566 is_a: ZFA:0001109 ! oocyte relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001266 ! ovarian follicle stage III relationship: start ZFS:0000043 ! Juvenile:Days 45-89 [Term] id: ZFA:0001567 name: oocyte stage I namespace: zebrafish_anatomy def: "Oocyte part of stage I ovarian follicle. Stage I oocytes are basophilic, and have relatively large nuclei." [GOC:cvs, GOC:mh, ORCiD:0000-0001-9114-8737, ORCID:0000-0002-2244-7917, ZFIN:ZDB-PUB-140513-387] comment: Oocytes reside in nests with other oocytes (Stage IA) and then within a definitive follicle (Stage IB), where they greatly increase in size ZDB-PUB-961014-1020. subset: cell_slim synonym: "oocytes stage I" EXACT PLURAL [] synonym: "previtellogenic oocyte" RELATED [ZFIN:ZDB-PUB-140513-387] synonym: "primary oocyte" EXACT [] synonym: "Stage 1 oocyte" EXACT [] xref: TAO:0001567 is_a: ZFA:0001109 ! oocyte relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001263 ! ovarian follicle stage I relationship: start ZFS:0000043 ! Juvenile:Days 45-89 [Term] id: ZFA:0001568 name: oocyte stage IV namespace: zebrafish_anatomy def: "Oocyte part of stage IV ovarian follicle. Stage IV oocytes are large and filled with noncrystalline yolky bodies." [GOC:CVS, GOC:mh, ORCiD:0000-0001-9114-8737, ORCID:0000-0002-2244-7917, ZFIN:ZDB-PUB-140513-387] comment: In stage IV (oocyte maturation), oocytes increase slightly in size, become translucent, and their yolk becomes non-crystalline as they undergo final meiotic maturation in vivo (and in response to DHP in vitro). ZDB-PUB-961014-1020. subset: cell_slim synonym: "mature oocytes" EXACT [] synonym: "oocytes stage IV" EXACT PLURAL [] synonym: "postvitellogenic oocyte" RELATED [ZFIN:ZDB-PUB-140513-387] synonym: "Stage 4 oocyte" EXACT [] xref: TAO:0001568 is_a: ZFA:0001109 ! oocyte relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001264 ! ovarian follicle stage IV relationship: start ZFS:0000043 ! Juvenile:Days 45-89 [Term] id: ZFA:0001569 name: oocyte stage V namespace: zebrafish_anatomy def: "Oocyte part of stage V ovarian follicle." [GOC:mh, ORCiD:0000-0001-9114-8737] comment: In stage V (mature egg), eggs (approx. 0.75 mm) are ovulated into the ovarian lumen and are capable of fertilization ZDB-PUB-961014-1020. subset: cell_slim synonym: "mature egg" EXACT [] synonym: "unactivated egg" EXACT [] xref: TAO:0001569 is_a: ZFA:0001109 ! oocyte relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000043 ! Juvenile:Days 45-89 [Term] id: ZFA:0001570 name: unfertilized egg namespace: zebrafish_anatomy def: "A female gamete where meiosis has progressed to metaphase II and is able to participate in fertilization. In zebrafish specified to be outside the body." [ISBN:0721662544] comment: Outside the body. subset: cell_slim synonym: "activated oocyte" EXACT [] synonym: "egg" EXACT [] xref: CL:0000025 xref: TAO:0001570 is_a: ZFA:0009000 ! cell relationship: develops_from ZFA:0001569 ! oocyte stage V relationship: end ZFS:0000001 ! Zygote:1-cell relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001571 name: postovulatory follicle namespace: zebrafish_anatomy def: "A follicle that has undergone ovulation and no longer contains an oocyte." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] synonym: "postovulatory follicles" EXACT PLURAL [] xref: TAO:0001571 is_a: ZFA:0001110 ! ovarian follicle relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000042 ! Juvenile:Days 30-44 [Term] id: ZFA:0001572 name: superior cervical ganglion namespace: zebrafish_anatomy def: "Trunk ganglion which is bilaterally paired and located at the anterior end of the sympathetic ganglion chain." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "SCG" RELATED [] synonym: "superior sympathetic cervical ganglion" EXACT [] xref: TAO:0001572 is_a: ZFA:0001573 ! trunk ganglion relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001576 ! sympathetic nervous system relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001573 name: trunk ganglion namespace: zebrafish_anatomy def: "Ganglion which is located in the trunk." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "trunk ganglia" EXACT PLURAL [] xref: TAO:0001573 is_a: ZFA:0000190 ! ganglion relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0001574 name: autonomic nervous system namespace: zebrafish_anatomy def: "Nervous system that innervates smooth muscle, cardiac muscle and glands. Regulates involuntary process such as blood circulation and digestion. Has subdivisions sympathetic nervous system and parasympathetic nervous system." [GOC:cvs, GOC:ymb, ISBN:0314472304, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] synonym: "ANS" EXACT [] xref: TAO:0001574 is_a: ZFA:0000396 ! nervous system relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001575 name: parasympathetic nervous system namespace: zebrafish_anatomy def: "Autonomic nervous system where the cell bodies lie in the brain and sacral region of the spinal cord. The neurons are mainly cholinergic." [GOC:GOC, GOC:ymb, ISBN:0080923437, ORCiD:0000-0002-9900-7880] xref: TAO:0001575 is_a: ZFA:0001574 ! autonomic nervous system relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001576 name: sympathetic nervous system namespace: zebrafish_anatomy def: "Autonomic nervous system that originates beginning at the thoracic and lumbar areas of the spinal cord. Sympathetic neurons are primarily adrenergic producing the neurotransmitter noradrenalin along with other neuropeptides." [GOC:cvs, GOC:ymb, ISBN:0080923437, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] xref: TAO:0001576 is_a: ZFA:0001574 ! autonomic nervous system relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001577 name: premaxilla ascending process namespace: zebrafish_anatomy def: "Process of the premaxilla that extends posteriorly and overlays the mesethmoid." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "premaxilla ascending processes" EXACT PLURAL [] xref: TAO:0001577 is_a: ZFA:0001590 ! dermal bone relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000567 ! premaxilla relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001578 name: anterior dorsomedial process of autopalatine namespace: zebrafish_anatomy def: "In cypriniforms the anterior portion of the palatine has a dorsomedial process which abuts against the mesethmoid. Such a process is not present in other ostariophysans or in other primitive teleosts." [GOC:mh, GOC:ymb, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-9900-7880] synonym: "anterior dorsomedial process of autopalatines" EXACT PLURAL [] xref: TAO:0001578 is_a: ZFA:0001637 ! bony projection relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000620 ! autopalatine relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001579 name: ural vertebra 2 namespace: zebrafish_anatomy def: "Ural vertebra that is the second vertebra posterior to preural centrum 1." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001579 is_a: ZFA:0001189 ! vertebra relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000862 ! caudal fin skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001580 name: neurocranium namespace: zebrafish_anatomy def: "Anatomical cluster that is the regional skeletal system surrounding the brain." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "braincase" EXACT [] xref: TAO:0001580 is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000737 ! cranium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001581 name: ural centrum 2 namespace: zebrafish_anatomy def: "A vertebral centrum that is located immediately posterior to ural centrum 1. Ural centrum 2 is an unpaired median bone." [TAO:curator] xref: TAO:0001581 is_a: ZFA:0001591 ! endochondral bone relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001579 ! ural vertebra 2 relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001582 name: non-Weberian precaudal vertebra namespace: zebrafish_anatomy def: "Precaudal vertebra that is not a Weberian vertebra. Vertebra 5 through 14." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "non-Weberian precaudal vertebrae" EXACT PLURAL [] xref: TAO:0001582 is_a: ZFA:0000263 ! precaudal vertebra relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001583 name: preural centrum 1+ ural centrum 1 namespace: zebrafish_anatomy def: "Vertebra which is the fused centra of preural 1 and ural 1. These elements do not develop independently in zebrafish." [ZFIN:ZDB-PUB-031103-13] synonym: "urostyle " RELATED [] xref: TAO:0001583 is_a: ZFA:0001189 ! vertebra relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000862 ! caudal fin skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001584 name: caudal fin procurrent ray namespace: zebrafish_anatomy def: "Caudal fin lepidotrichium that is located anterior to the principal caudal fin rays. Caudal procurrent rays are unbranched." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "caudal procurrent lepidotrichium" EXACT [] synonym: "caudal procurrent ray " RELATED [] xref: TAO:0001584 is_a: ZFA:0001550 ! caudal fin lepidotrichium relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001585 name: caudal fin principal ray namespace: zebrafish_anatomy def: "Caudal fin lepidotrichium that is adjacent to a branched ray. Caudal principal rays may be segmented but unbranched and the main element forming the dorsal or ventral leading margin of the caudal fin or a ray that may be only segmented and branched and forms part of the middle-posterior region of the fin. A caudal principal ray is an unpaired median bone. There are 19 principal caudal rays, with 10 in the dorsal lobe and nine in the ventral lobe. The dorsal lobe rays articulate with hypurals 3-5." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-031103-13] synonym: "caudal principal lepidotrichium" EXACT [] synonym: "caudal principal ray" EXACT [] xref: TAO:0001585 is_a: ZFA:0001550 ! caudal fin lepidotrichium relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001586 name: pectoral fin radial namespace: zebrafish_anatomy def: "Radial which develops from the pectoral fin endoskeletal disc, supports the pectoral lepidotrichia or fin rays and connects the lepidotrichia with the primary pectoral girdle." [TAO:curator] synonym: "pectoral fin radials" EXACT PLURAL [] xref: TAO:0001586 is_a: ZFA:0000271 ! radial relationship: develops_from ZFA:0001456 ! pectoral fin endoskeletal disc relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000943 ! pectoral fin skeleton relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001587 name: pectoral fin proximal radial namespace: zebrafish_anatomy def: "Pectoral fin radial which develops from the pectoral fin endoskeletal disc, supports a few pectoral lepidotrichia or fin rays and connects the lepidotrichia and distal radials with the primary pectoral girdle (scapula and coracoid)." [TAO:curator] xref: TAO:0001587 is_a: ZFA:0001586 ! pectoral fin radial relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001588 name: pectoral fin distal radial namespace: zebrafish_anatomy def: "Pectoral fin radial, develops from the pectoral fin endoskeletal disc, and is located at the proximal region of a lepidotrichium, between its hemitrichia. Pectoral fin distal radial is paired." [TAO:curator] synonym: "pectoral fin distal radials" EXACT PLURAL [] xref: TAO:0001588 is_a: ZFA:0001586 ! pectoral fin radial relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001589 name: propterygium namespace: zebrafish_anatomy def: "The propterygium is the lateralmost or anteriormost basal cartilage that originates from the pectoral fin endoskeletal disc. The bases of the pectoral lepidotrichium 1 plus the propterygium articulates with the scapula." [TAO:Curator] synonym: "propterygia" EXACT PLURAL [] xref: TAO:0001589 is_a: ZFA:0001588 ! pectoral fin distal radial relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001590 name: dermal bone namespace: zebrafish_anatomy def: "Intramembranous bone that forms superficially in the organism. Dermal bones develop from the direct differentiation of mesenchymal cells into osteoblasts." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-120529-44] synonym: "dermal bones" EXACT PLURAL [] xref: TAO:0001590 is_a: ZFA:0001635 ! intramembranous bone relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001591 name: endochondral bone namespace: zebrafish_anatomy def: "Replacement bone that forms within cartilage." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "endochondral bones" EXACT PLURAL [] xref: TAO:0001591 is_a: ZFA:0001693 ! chondral bone is_a: ZFA:0005620 ! endochondral element relationship: develops_from ZFA:0001501 ! cartilage element relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001592 name: claustrum bone namespace: zebrafish_anatomy def: "Bone that is bilaterally paired endochondral bone with extensions of membrane bone forming part of a dorsolateral protective wall around the neural canal between the back of the skull and the beginning of the neural arch series. The first Weberian ossicle. Most recently, de Pinna and Grande (2003) have proposed the claustrum is homologous to the accessory neural arch of lower teleosts." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001592 is_a: ZFA:0000461 ! Weberian ossicle is_a: ZFA:0001591 ! endochondral bone is_a: ZFA:0001636 ! membrane bone relationship: develops_from ZFA:0000637 ! claustrum cartilage relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000040 ! Larval:Days 14-20 [Term] id: ZFA:0001593 name: quadrate ventral process namespace: zebrafish_anatomy def: "An endochondral bone that is the ventral, posteriorly-oriented bony extension of the quadrate." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "quadrate ventral processes" EXACT PLURAL [] xref: TAO:0000224 is_a: ZFA:0001591 ! endochondral bone relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000621 ! quadrate relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0001594 name: preopercle horizontal limb namespace: zebrafish_anatomy def: "A dermal bone that is the lower, horizontal portion of the preopercle bone." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "preopercle anterior arm" EXACT [ZFIN:ZDB-PUB-961014-192] synonym: "preopercle horizontal arm" EXACT [] synonym: "preopercle lower limb" EXACT [] synonym: "preopercle ventral arm" EXACT [ZFIN:ZDB-PUB-961014-192] xref: TAO:0000289 is_a: ZFA:0001590 ! dermal bone relationship: end ZFS:0000044 ! Adult relationship: overlaps ZFA:0005631 ! preopercle horizontal limb-symplectic joint relationship: part_of ZFA:0000264 ! preopercle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001595 name: preopercle vertical limb namespace: zebrafish_anatomy def: "A dermal bone that is the upper, vertical portion of the preopercle bone." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "preopercle dorsal arm" EXACT [ZFIN:ZDB-PUB-961014-192.] synonym: "preopercle posterior arm" EXACT [ZFIN:ZDB-PUB-961014-192.] synonym: "preopercle upper limb" EXACT [] synonym: "preopercle vertical arm" EXACT [] xref: TAO:0000336 is_a: ZFA:0001590 ! dermal bone relationship: end ZFS:0000044 ! Adult relationship: overlaps ZFA:0005632 ! preopercle vertical limb-hyomandibula joint relationship: part_of ZFA:0000264 ! preopercle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001596 name: joint namespace: zebrafish_anatomy def: "Anatomical cluster which consists of two or more adjacent bones or cartilages, which may be interconnected by various types of tissue." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "joints" EXACT PLURAL [] xref: TAO:0000367 is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000434 ! skeletal system relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001597 name: exoccipital posteroventral region namespace: zebrafish_anatomy def: "Endochondral bone which is the posteroventral region of the exoccipital bone." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "exoccipitals posteroventral regions" EXACT PLURAL [] xref: TAO:0000348 is_a: ZFA:0001591 ! endochondral bone relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000661 ! exoccipital relationship: part_of ZFA:0001627 ! lagenar capsule relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0001598 name: basioccipital posterodorsal region namespace: zebrafish_anatomy def: "Endochondral bone which is the posterodorsal region of the basioccipital bone." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0000337 is_a: ZFA:0001591 ! endochondral bone relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000472 ! basioccipital relationship: part_of ZFA:0001627 ! lagenar capsule relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001599 name: os suspensorium medial flange namespace: zebrafish_anatomy xref: TAO:0002214 is_a: ZFA:0001591 ! endochondral bone relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001171 ! os suspensorium relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0001600 name: neural spine 4 namespace: zebrafish_anatomy def: "Neural spine that is located on the fourth vertebra." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001546 is_a: ZFA:0001336 ! neural spine relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001601 name: manubrium namespace: zebrafish_anatomy def: "Anterior branch of the intercalarium. The manubrium develops as a simple antero-lateral membrane bone extension from basidorsal 2." [ZFIN:ZDB-PUB-031103-13] synonym: "anterior branch of the intercalarium" RELATED [] synonym: "anterior process of the intercalarium" EXACT [] synonym: "horizontal process" EXACT [] synonym: "manubrium incudus" EXACT [] xref: TAO:0001553 is_a: ZFA:0001636 ! membrane bone relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000525 ! intercalarium relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0001602 name: intercalarium ascending process namespace: zebrafish_anatomy def: "Bony process that develops as a dorsally projecting cartilaginous extension from the basidorsal. The ascending process is longer relative to the manubrium in larvae (5.1-11.0 mm). By 13.0 mm, the ascending process appears highly reduced in size." [ZFIN:ZDB-PUB-031103-13] xref: TAO:0001548 is_a: ZFA:0001591 ! endochondral bone relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000525 ! intercalarium relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0001603 name: intercalarium articulating process namespace: zebrafish_anatomy def: "Portion of the intercalarium that ossifies from the cartilage condensation and articulates with a groove in centrum 2." [ZFIN:ZDB-PUB-031103-13] synonym: "articular process" RELATED [] xref: TAO:0001549 is_a: ZFA:0001591 ! endochondral bone relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000525 ! intercalarium relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0001604 name: caudal fin upper lobe namespace: zebrafish_anatomy def: "Surface structure that is the dorsal portion of the caudal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "caudal fin dorsal lobe" EXACT [] xref: TAO:0001593 is_a: ZFA:0000292 ! surface structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001058 ! caudal fin relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001605 name: caudal fin lower lobe namespace: zebrafish_anatomy def: "Surface structure that is the ventral portion of the caudal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "caudal fin ventral lobe" EXACT [] xref: TAO:0001594 is_a: ZFA:0000292 ! surface structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001058 ! caudal fin relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001606 name: pharyngeal arch 3 namespace: zebrafish_anatomy synonym: "branchial arch 1" EXACT [] synonym: "gill arch 1" EXACT [] synonym: "visceral arch 3" EXACT [] xref: TAO:0001598 is_a: ZFA:0001613 ! pharyngeal arch 3-7 relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001607 name: pharyngeal arch 4 namespace: zebrafish_anatomy synonym: "branchial arch 2" EXACT [] synonym: "gill arch 2" EXACT [] synonym: "visceral arch 4" EXACT [] xref: TAO:0001599 is_a: ZFA:0001613 ! pharyngeal arch 3-7 relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001608 name: pharyngeal arch 5 namespace: zebrafish_anatomy synonym: "branchial arch 3" EXACT [] synonym: "gill arch 3" EXACT [] synonym: "visceral arch 5" EXACT [] xref: TAO:0001600 is_a: ZFA:0001613 ! pharyngeal arch 3-7 relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001609 name: pharyngeal arch 6 namespace: zebrafish_anatomy synonym: "branchial arch 4" EXACT [] synonym: "gill arch 4" EXACT [] synonym: "visceral arch 6" EXACT [] xref: TAO:0001601 is_a: ZFA:0001613 ! pharyngeal arch 3-7 relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001610 name: pharyngeal arch 7 namespace: zebrafish_anatomy synonym: "branchial arch 5" EXACT [] synonym: "gill arch 5" EXACT [] synonym: "visceral arch 7" EXACT [] xref: TAO:0001602 is_a: ZFA:0001613 ! pharyngeal arch 3-7 relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001611 name: pharyngeal arch 2 namespace: zebrafish_anatomy def: "The second pharyngeal arch, also known as the hyoid arch, forms jaw support structures. Anteriorly positioned cranial neural crest cells, which align with rhombomeres 4/5, contribute to the hyoid arch structures including the ceratohyla and hyosymplectic cartilages." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-020904-6, ZFIN:ZDB-PUB-040726-7, ZFIN:ZDB-PUB-961014-985] synonym: "hyoid arch" EXACT [] synonym: "visceral arch 2" EXACT [] xref: TAO:0001596 is_a: ZFA:0001306 ! pharyngeal arch relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001612 name: pharyngeal arch 1 namespace: zebrafish_anatomy def: "The first pharyngeal arch, also known as the mandibular arch, forms the jaw. The first pharyngeal arch gives rise to elements of the jaw, with the most anteriorly positioned cranial neural crest cells contributing to mandibular arch structures, including Meckel's and palatoquadrate cartilages that constitute the lower and upper jaw respectively." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-020904-6, ZFIN:ZDB-PUB-121120-12, ZFIN:ZDB-PUB-961014-985] synonym: "mandibular arch" EXACT [] synonym: "visceral arch 1" EXACT [] xref: TAO:0001595 is_a: ZFA:0001306 ! pharyngeal arch relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001613 name: pharyngeal arch 3-7 namespace: zebrafish_anatomy alt_id: ZFA:0000515 alt_id: ZFA:0000625 synonym: "branchial arch" EXACT [] synonym: "branchial arches" EXACT PLURAL [] synonym: "branchial bar" EXACT [] synonym: "branchial bars" EXACT PLURAL [] synonym: "gill arch" EXACT [] synonym: "gill arches 1-5" EXACT [] synonym: "visceral arches 3-7" EXACT [] xref: TAO:0000625 xref: TAO:0001597 is_a: ZFA:0001306 ! pharyngeal arch relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000056 ! pharynx relationship: part_of ZFA:0000354 ! gill relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001614 name: atrial endocardium namespace: zebrafish_anatomy def: "Endocardium that is part of the atrium." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0002169 is_a: ZFA:0001320 ! endocardium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000471 ! atrium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001615 name: ventricular endocardium namespace: zebrafish_anatomy def: "Endocardium that is part of the cardiac ventricle." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0002247 is_a: ZFA:0001320 ! endocardium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000009 ! cardiac ventricle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001616 name: atrioventricular canal endocardium namespace: zebrafish_anatomy def: "Endocardium that is part of the atrioventricular canal." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0002170 is_a: ZFA:0001320 ! endocardium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001315 ! atrioventricular canal relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001617 name: otolith namespace: zebrafish_anatomy alt_id: ZFA:0000139 def: "Portion of organism substance composed of calcium carbonate located in the otolith organ and positioned over a sensory macula; two form in each vesicle during the late segmentation period. (Also see Anatomical Atlas entry for otolith by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576] synonym: "immature otolith" RELATED [] synonym: "immature otoliths" RELATED PLURAL [] synonym: "statolith" EXACT [] xref: TAO:0001621 is_a: ZFA:0001487 ! portion of organism substance relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000051 ! otic vesicle relationship: part_of ZFA:0000559 ! otolith organ relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0001618 name: pons namespace: zebrafish_anatomy is_obsolete: true [Term] id: ZFA:0001619 name: optic fiber layer namespace: zebrafish_anatomy def: "Fiber layer adjacent the retinal ganglion cell layer which is comprised of their axons as they traverse to the optic nerve." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-000126-5] synonym: "nerve fiber layer" EXACT [] synonym: "optic fiber layers" EXACT PLURAL [] xref: TAO:0002212 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000046 ! retinal neural layer relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0001620 name: pronephric proximal convoluted tubule namespace: zebrafish_anatomy def: "Most anterior portion of the pronephric duct (or tubule as described by Wingert et al, 2007)." [ZFIN:ZDB-PUB-071029-9] synonym: "PCT" EXACT [] xref: TAO:0002238 is_a: ZFA:0005171 ! duct relationship: end ZFS:0000039 ! Larval:Days 7-13 relationship: part_of ZFA:0000150 ! pronephric duct relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001621 name: pronephric proximal straight tubule namespace: zebrafish_anatomy def: "Portion of the pronephric duct (or tubule as described by Wingert et al, 2007) which is just posterior to the proximal convoluted tubule." [ZFIN:ZDB-PUB-071029-9] synonym: "proximal straight tubules" EXACT PLURAL [] xref: TAO:0002239 is_a: ZFA:0005171 ! duct relationship: end ZFS:0000039 ! Larval:Days 7-13 relationship: part_of ZFA:0000150 ! pronephric duct relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001622 name: pronephric distal early tubule namespace: zebrafish_anatomy def: "Portion of the pronephric duct (or tubule as described by Wingert et al, 2007) which is just posterior to the proximal straight tubule." [ZFIN:ZDB-PUB-071029-9] synonym: "pronephric distal early tubules" EXACT PLURAL [] xref: TAO:0002236 is_a: ZFA:0005171 ! duct relationship: end ZFS:0000039 ! Larval:Days 7-13 relationship: part_of ZFA:0000150 ! pronephric duct relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001623 name: posterior pronephric duct namespace: zebrafish_anatomy def: "Most posterior portion of the pronephric duct (or tubule as described by Wingert et al, 2007) which ends at the cloacal chamber at the pronephric duct opening." [ZFIN:ZDB-PUB-071029-9] synonym: "posterior pronephric ducts" EXACT PLURAL [] xref: TAO:0002225 is_a: ZFA:0005171 ! duct relationship: end ZFS:0000039 ! Larval:Days 7-13 relationship: part_of ZFA:0000150 ! pronephric duct relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001624 name: pronephric distal late tubule namespace: zebrafish_anatomy def: "Portion of the pronephric duct (or tubule as described by Wingert et al, 2007) which is just posterior to the distal early tubule." [ZFIN:ZDB-PUB-071029-9] synonym: "distal late tubules" EXACT PLURAL [] is_a: ZFA:0005171 ! duct relationship: end ZFS:0000039 ! Larval:Days 7-13 relationship: part_of ZFA:0000150 ! pronephric duct relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001625 name: optic nerve head namespace: zebrafish_anatomy def: "Portion of cranial nerve II where large fascicles of axons from the optic fiber layer come together prior to leaving the eye." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "optic nerve heads" EXACT PLURAL [] xref: TAO:0002213 is_a: ZFA:0007009 ! nerve relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000435 ! cranial nerve II relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001626 name: cerebral spinal fluid namespace: zebrafish_anatomy def: "Portion of organism substance that is a clear fluid that occupies the subarachnoid space and the ventricular system around and inside the brain." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "CSF" EXACT [] xref: TAO:0002184 is_a: ZFA:0001487 ! portion of organism substance relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001627 name: lagenar capsule namespace: zebrafish_anatomy def: "Anatomical cluster that consists of a bulla formed by the exoccipital and basioccipital bones, and surrounds the lagena." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "lagenar capsules" EXACT PLURAL [] xref: TAO:0001620 is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001628 name: replacement bone namespace: zebrafish_anatomy def: "Bone that forms as a replacement of another structural tissue." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "replacement bones" EXACT PLURAL [] xref: TAO:0001637 is_a: ZFA:0001514 ! bone element is_a: ZFA:0005624 ! replacement element relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001629 name: perichordal bone namespace: zebrafish_anatomy def: "Replacement bone that forms within the connective tissue surrounding the notochord." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "perichordal bones" EXACT PLURAL [] xref: TAO:0001639 is_a: ZFA:0001628 ! replacement bone relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001630 name: perichondral bone namespace: zebrafish_anatomy def: "Replacement bone that forms within the connective tissue surrounding cartilage." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "perichondral bones" EXACT PLURAL [] xref: TAO:0001638 is_a: ZFA:0001693 ! chondral bone relationship: develops_from ZFA:0001634 ! perichondrium relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001631 name: notochordal ossification namespace: zebrafish_anatomy def: "Perichordal bone that surrounds the anterior tip of the notochord." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001640 is_a: ZFA:0001629 ! perichordal bone relationship: develops_from ZFA:0001633 ! perichordal connective tissue relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001632 name: portion of connective tissue namespace: zebrafish_anatomy def: "Portion of tissue that consists of mesodermally derived cells and intercellular matrix comprised of protein fibers and carbohydrates, which supports, ensheathes and binds together other tissues." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001641 xref: VSAO:0000017 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001633 name: perichordal connective tissue namespace: zebrafish_anatomy def: "Portion of connective tissue which surrounds the notochord." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001642 is_a: ZFA:0001632 ! portion of connective tissue relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001634 name: perichondrium namespace: zebrafish_anatomy def: "Portion of connective tissue which surrounds cartilage." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "cartilage connective tissue" EXACT [] xref: TAO:0001643 is_a: ZFA:0001632 ! portion of connective tissue relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001635 name: intramembranous bone namespace: zebrafish_anatomy def: "Bone that forms directly within mesenchyme, and does not replace other tissues." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "intramembranous bones" EXACT PLURAL [] xref: TAO:0001644 is_a: ZFA:0001514 ! bone element relationship: develops_from ZFA:0000393 ! mesenchyme relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001636 name: membrane bone namespace: zebrafish_anatomy def: "Intramembranous bone that forms deep in the organism." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "membrane bones" EXACT PLURAL [] xref: TAO:0001645 is_a: ZFA:0001635 ! intramembranous bone relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001637 name: bony projection namespace: zebrafish_anatomy def: "Portion of connective tissue that is an extension of a bone." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "bony projections" EXACT PLURAL [] synonym: "process" EXACT [TAO:0001834] xref: TAO:0001646 xref: TAO:0001834 is_a: ZFA:0005619 ! skeletal tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001514 ! bone element relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001638 name: statoacoustic (VIII) nucleus namespace: zebrafish_anatomy synonym: "cochlear nucleus" EXACT [] synonym: "vestibulocochlear nucleus" EXACT [] xref: TAO:0002243 is_a: ZFA:0001658 ! hindbrain nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000029 ! hindbrain relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001639 name: vascular endothelium namespace: zebrafish_anatomy def: "Simple squamous epithelium which lines blood and lymphatic vessels and the heart." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "endothelia" EXACT PLURAL [] xref: TAO:0002171 is_a: ZFA:0001498 ! simple squamous epithelium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005249 ! vasculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001640 name: cephalic flexure namespace: zebrafish_anatomy def: "Ventral bend in the brain occurring caudal to the adenohypophyseal placode." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "ventral flexure" EXACT [] xref: TAO:0002181 is_a: ZFA:0005593 ! neuraxis flexure relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000008 ! brain relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0001641 name: rudimentary neural arch namespace: zebrafish_anatomy def: "Neural arch on the urostyle. It does not support a neural spine. Sanger and McCune 2002." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001666 is_a: ZFA:0001066 ! neural arch relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000158 ! urostyle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001642 name: tooth row namespace: zebrafish_anatomy def: "Anatomical cluster consisting of adjacent teeth constituting a row." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "tooth rows" EXACT PLURAL [] xref: TAO:0001667 is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001643 name: anatomical space namespace: zebrafish_anatomy def: "Non-material anatomical entity of three dimensions, that is generated by morphogenetic or other physiologic processes; is surrounded by one or more anatomical structures; contains one or more organism substances or anatomical structures." [GOC:mh, ORCiD:0000-0001-9114-8737] comment: Part_of parents of these terms should be changed to be located_in rather then part_of when we get the appropriate relation. synonym: "anatomical spaces" EXACT PLURAL [] xref: CARO:0000005 xref: TAO:0001668 is_a: ZFA:0100000 ! zebrafish anatomical entity relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000001 ! Zygote:1-cell [Term] id: ZFA:0001644 name: articular cartilage namespace: zebrafish_anatomy def: "Cartilage of the lower jaw that give rise to a portion of the anguloarticular compound bone." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] synonym: "articular cartilages" EXACT PLURAL [] xref: TAO:0001670 is_a: ZFA:0001460 ! pharyngeal arch cartilage relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001645 name: angular bone namespace: zebrafish_anatomy def: "Dermal bone that is located posterior to the dentary and lateral to the articular and retroarticular bones of the lower jaw. The angular forms the outer dermal sheet of the posterior part of the lower jaw. The angular bears a portion of the mandibular sensory canal. The angular is a paired bone." [TAO:curator] synonym: "angular bones" EXACT PLURAL [] xref: TAO:0001669 is_a: ZFA:0001590 ! dermal bone relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001646 name: anal fin radial namespace: zebrafish_anatomy def: "Internal skeletal supports of the anal fin." [TAO:curator] synonym: "anal fin pterygiophores" RELATED [] synonym: "anal fin radials" EXACT PLURAL [] xref: TAO:0001671 is_a: ZFA:0000271 ! radial relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001647 name: dorsal fin radial namespace: zebrafish_anatomy def: "Internal skeletal supports of the dorsal fin." [TAO:curator] synonym: "dorsal fin pterygiophore " RELATED [] synonym: "dorsal fin radials" EXACT PLURAL [] xref: TAO:0001672 is_a: ZFA:0000271 ! radial relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001648 name: cardiac neural crest namespace: zebrafish_anatomy def: "Neural crest that migrates into the pharyngeal arches and heart, forming connective tissue that separates the vessels of the heart." [GOC:ymb, ORCiD:0000-0002-9900-7880] xref: TAO:0002173 is_a: ZFA:0000045 ! neural crest relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001649 name: infraorbital series namespace: zebrafish_anatomy def: "Anatomical cluster that is the series of dermal bones associated with the infraorbital sensory canal located under and posterior to the eye." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "circumorbital series" EXACT [] xref: TAO:0001709 is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000040 ! Larval:Days 14-20 [Term] id: ZFA:0001650 name: branchial mesenchyme namespace: zebrafish_anatomy synonym: "gill mesenchyme" EXACT [] xref: TAO:0002172 is_a: ZFA:0000113 ! head mesenchyme relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001651 name: sternohyoid namespace: zebrafish_anatomy alt_id: ZFA:0000283 def: "Head muscle that originates on the anterior region of the cleithrum and inserts on the urohyal. The hypobranchial forms initially as left and right parts that later fuse together forming a cone shape. The muscle is innervated by the occipitospinals." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-080306-33, ZFIN:ZDB-PUB-970819-13] synonym: "hypobranchial muscle" EXACT [] synonym: "sternohyoideus" EXACT [] synonym: "sternohyoids" EXACT [] xref: TAO:0000283 xref: TAO:0002200 is_a: ZFA:0000236 ! mandibular muscle relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0001652 name: head muscle namespace: zebrafish_anatomy def: "Muscle which is part of the head." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "cephalic muscle" EXACT [] synonym: "cranial muscle " RELATED [] xref: TAO:0002198 is_a: ZFA:0005145 ! muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000328 ! cephalic musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001653 name: pericardial muscle namespace: zebrafish_anatomy def: "Muscle which is paired and runs anterio-posteriorly along the heart and is covered with epicardium." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-001026-2] xref: TAO:0002221 is_a: ZFA:0005145 ! muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000473 ! trunk musculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001654 name: opercular cavity namespace: zebrafish_anatomy def: "Anatomical space which is located beneath the operculum and external to the gills." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0002154 is_a: ZFA:0001643 ! anatomical space relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001114 ! head relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001655 name: pericardial cavity namespace: zebrafish_anatomy def: "Anatomical space in which the heart is located and is surrounded by the pericardium." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "thoracic cavity" EXACT [] xref: TAO:0002220 is_a: ZFA:0001643 ! anatomical space relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001438 ! coelom relationship: part_of ZFA:0007115 ! pericardial region relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001656 name: pleuroperitoneal cavity namespace: zebrafish_anatomy def: "Anatomical space which contains the abdominal visceral and swim bladder. Located posterior to the pericardial cavity, separated by the transverse septum. From Functional Anatomy of the Vertebrates, third edition." [GOC:cvs, ISBN:0030223695, ORCiD:0000-0002-2244-7917] synonym: "visceral cavity" EXACT [] xref: TAO:0002224 is_a: ZFA:0001643 ! anatomical space relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001438 ! coelom relationship: part_of ZFA:0007116 ! pleuroperitoneal region relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001657 name: supraoptic tract namespace: zebrafish_anatomy def: "CNS tract/commissure which extends between the telencephalon and diencephalon and lies along the dorsal edge of the optic stalk." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-719, ZFIN:ZDB-PUB-961014-955] synonym: "SOT" EXACT [] xref: TAO:0002244 is_a: ZFA:0001682 ! white matter relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000008 ! brain relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0001658 name: hindbrain nucleus namespace: zebrafish_anatomy def: "Nucleus located within the hindbrain." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0002177 is_a: ZFA:0005575 ! brain nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000029 ! hindbrain relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001659 name: diencephalic nucleus namespace: zebrafish_anatomy def: "Brain nucleus part of the diencephalon." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0002191 is_a: ZFA:0001488 ! multi-tissue structure is_a: ZFA:0005575 ! brain nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000101 ! diencephalon relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001660 name: telencephalic nucleus namespace: zebrafish_anatomy xref: TAO:0002178 is_a: ZFA:0005575 ! brain nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000079 ! telencephalon relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001662 name: preglomerular nucleus namespace: zebrafish_anatomy def: "Diencephalic nucleus which is located in the caudal tuberculum. The preglomerular nuclei make up most of the migrated nuclei within the caudal tuberculum. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] xref: TAO:0002226 is_a: ZFA:0001659 ! diencephalic nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000633 ! caudal tuberculum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001663 name: cranial nerve root namespace: zebrafish_anatomy def: "The portion of tissue that is the initial segment of one of the cranial nerves leaving the central nervous system." [http://en.wikipedia.org/wiki/Nerve_root] xref: TAO:0002190 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000641 ! cranial nerve relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001665 name: midbrain nucleus namespace: zebrafish_anatomy def: "Nucleus located in the midbrain." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0002209 is_a: ZFA:0005575 ! brain nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000128 ! midbrain relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001666 name: periventricular nucleus of ventral telencephalon namespace: zebrafish_anatomy def: "Telencephalic nucleus which is in contact with the median ependymal lining of the ventricle and consists of the dorsal, ventral, supracommissural and postcommissural nuclei of the ventral telencephalon. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] xref: TAO:0002222 is_a: ZFA:0001660 ! telencephalic nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000304 ! ventral telencephalon relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001667 name: peripheral nucleus of ventral telencephalon namespace: zebrafish_anatomy def: "Telencephalic nucleus which has migrated away from the ependyma and consists of the central, lateral nuclei and the dorsal and ventral entopeduncular nuclei. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] xref: TAO:0002179 is_a: ZFA:0001660 ! telencephalic nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000304 ! ventral telencephalon relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001668 name: central nucleus of ventral telencephalon namespace: zebrafish_anatomy def: "Peripheral nucleus of the ventral telencephalon which is located immediately lateral to the dorsal nucleus of the ventral telencephalon. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "area ventralis telencephali, nucleus centralis" EXACT [] xref: TAO:0002180 is_a: ZFA:0001667 ! peripheral nucleus of ventral telencephalon relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001669 name: intermediate nucleus namespace: zebrafish_anatomy def: "Diencephalic nucleus which is located between the dorsal hypothalamus and the caudal tuberal nucleus and does not contain tyrosine hydroxylase immunoreactive cells." [ZFIN:ZDB-PUB-001220-2] xref: TAO:0002202 is_a: ZFA:0001659 ! diencephalic nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000633 ! caudal tuberculum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001670 name: notochord posterior region namespace: zebrafish_anatomy def: "Portion of tissue that is the part of the notochord located in the caudal fin." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001821 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000135 ! notochord relationship: part_of ZFA:0000862 ! caudal fin skeleton relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0001671 name: macula communis namespace: zebrafish_anatomy def: "Epithelium that is the primary epithelium of the developing inner ear and has anterior and posterior maculae as its parts. These maculae later move apart into distinct regions of epithelium." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-383] xref: TAO:0002206 is_a: ZFA:0001486 ! epithelium relationship: end ZFS:0000028 ! Segmentation:26+ somites relationship: part_of ZFA:0000217 ! inner ear relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0001672 name: dorsolateral septum namespace: zebrafish_anatomy def: "Portion of tissue that grows in from the dorsolateral wall of the otic vesicle, forming a dorsolateral partition between the developing anterior and posterior semicircular canals." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-383] synonym: "dorsal bar" RELATED [] xref: TAO:0002193 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000262 ! posterior semicircular canal relationship: part_of ZFA:0000314 ! anterior semicircular canal relationship: start ZFS:0000032 ! Pharyngula:High-pec [Term] id: ZFA:0001673 name: pronephric podocyte namespace: zebrafish_anatomy def: "Podocyte that is part of the pronephros." [GOC:cvs, ORCiD:0000-0002-2244-7917] subset: cell_slim xref: TAO:0002237 is_a: ZFA:0009285 ! podocyte relationship: end ZFS:0000039 ! Larval:Days 7-13 relationship: part_of ZFA:0001557 ! pronephric glomerulus relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001674 name: mesonephric podocyte namespace: zebrafish_anatomy def: "Podocyte that is part of the kidney (mesonephros)." [GOC:cvs, ORCiD:0000-0002-2244-7917] subset: cell_slim xref: TAO:0002208 is_a: ZFA:0009285 ! podocyte relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001288 ! renal glomerulus relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0001675 name: ligament namespace: zebrafish_anatomy def: "Portion of connective tissue that is a fibrous band connecting bones or cartilages or supporting an organ." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0001682 is_a: ZFA:0001632 ! portion of connective tissue relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001676 name: annular ligament namespace: zebrafish_anatomy def: "Ligament that is in the eye and is located at the angle between the cornea and the iris." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-070629-16] xref: TAO:0002141 is_a: ZFA:0001675 ! ligament relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005566 ! anterior segment eye relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0001677 name: floor plate midbrain region namespace: zebrafish_anatomy def: "Floor plate that is part of the midbrain." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0002196 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0000022 ! floor plate relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0001678 name: immature eye namespace: zebrafish_anatomy def: "Multi-tissue structure that consists of the structures that develop into the retina and lens." [GOC:mh, ORCiD:0000-0001-9114-8737] comment: Dbxref for ZFIN changed to match actual database accession number. Old Dbxref ZDB-ANAT-090226-1 correct Dbxref ZDB-ANAT-090227-5. xref: TAO:0002201 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0001679 name: solid lens vesicle namespace: zebrafish_anatomy def: "Portion of tissue that gives rise to the lens. The lens of the zebrafish forms by delamination of lens placodal cells and not through invagination. This results in a solid spherical mass as opposed to a hollow lens vesicle. Detachment of the solid lens vesicle of zebrafish at 24-26 hpf is accomplished in part by apoptosis, similar to mammals." [GOC:cvs, ORCiD:CVS, ZFIN:ZDB-PUB-050701-15] comment: Dbxref for ZFIN changed to match actual database accession number. Old Dbxref ZDB-ANAT-090226-2 correct Dbxref ZDB-ANAT-090227-6. synonym: " immature lens" EXACT [] synonym: "lens mass" EXACT [ZFIN:ZDB-PUB-091023-49] synonym: "lens vesicle" EXACT [ZFIN:ZDB-PUB-050701-15] synonym: "presumptive lens" RELATED [] xref: TAO:0002205 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0000122 ! lens placode relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0001678 ! immature eye relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0001680 name: parvocellular preoptic nucleus namespace: zebrafish_anatomy def: "Diencephalic nucleus that is part of the preoptic area. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209] xref: TAO:0002219 is_a: ZFA:0001659 ! diencephalic nucleus relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Melissa Haendel creation_date: 2009-03-23T01:16:53Z [Term] id: ZFA:0001681 name: grey matter namespace: zebrafish_anatomy def: "Multi-tissue comprised of neurons, dendrites, axon terminals, glial cells, and capillaries." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "gray mater" RELATED [] synonym: "gray matter" EXACT [] xref: TAO:0002197 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000012 ! central nervous system relationship: start ZFS:0000000 ! Unknown created_by: Melissa Haendel creation_date: 2009-03-23T01:47:27Z [Term] id: ZFA:0001682 name: white matter namespace: zebrafish_anatomy alt_id: ZFA:0000145 def: "Multi-tissue structure comprised largely of myelinated axons." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "CNS tract/commissure" EXACT [] synonym: "CNS white matter" EXACT [] synonym: "white mater" RELATED [] xref: TAO:0000145 xref: TAO:0002142 xref: TAO:0002143 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000012 ! central nervous system relationship: start ZFS:0000027 ! Segmentation:20-25 somites created_by: Melissa Haendel creation_date: 2009-03-23T01:50:38Z [Term] id: ZFA:0001683 name: corneal epithelium namespace: zebrafish_anatomy def: "Portion of tissue comprised of four to six layers of nonkeratinized, stratified squamous cells and represents approximately 60% of the thickness of the cornea." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-061010-3] xref: TAO:0002187 is_a: ZFA:0001486 ! epithelium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000640 ! cornea relationship: start ZFS:0000034 ! Hatching:Pec-fin created_by: Melissa Haendel creation_date: 2009-03-23T02:11:11Z [Term] id: ZFA:0001684 name: Bowman's layer namespace: zebrafish_anatomy def: "Acellular anatomical structure that is the zone of condensed collagen fibers underneath the basement membrane of the corneal epithelium that overlays the corneal stroma layer." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-050701-15, ZFIN:ZDB-PUB-061010-3] synonym: "anterior elastic lamina" EXACT [] synonym: "anterior limiting membrane" RELATED [] xref: TAO:0002155 is_a: ZFA:0000382 ! acellular anatomical structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000640 ! cornea relationship: start ZFS:0000039 ! Larval:Days 7-13 created_by: Melissa Haendel creation_date: 2009-03-23T02:11:47Z [Term] id: ZFA:0001685 name: corneal stroma namespace: zebrafish_anatomy def: "Portion of tissue that is located basal to Bowman's layer and distal to Descemet's membrane and is comprised largely of connective tissue." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-061010-3] xref: TAO:0002189 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000640 ! cornea relationship: start ZFS:0000034 ! Hatching:Pec-fin created_by: Melissa Haendel creation_date: 2009-03-23T02:12:16Z [Term] id: ZFA:0001686 name: Descemet's membrane namespace: zebrafish_anatomy def: "Acellular anatomical structure composed of collagen, Descemet's membrane is secreted as a basement membrane of the corneal endothelium. Located between the stroma and the corneal endothelium, it is approximately 0.15 micrometer thick at 6 months post-fertilization." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-050701-15, ZFIN:ZDB-PUB-061010-3] synonym: "posterior limiting membrane" EXACT [] xref: TAO:0002157 is_a: ZFA:0000382 ! acellular anatomical structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000640 ! cornea relationship: start ZFS:0000034 ! Hatching:Pec-fin created_by: Melissa Haendel creation_date: 2009-03-23T02:12:32Z [Term] id: ZFA:0001687 name: corneal endothelium namespace: zebrafish_anatomy def: "Epithelium that is the innermost layer of the cornea and is comprised of a monolayer of polygonal cells." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-061010-3] xref: TAO:0002186 is_a: ZFA:0001486 ! epithelium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000640 ! cornea relationship: start ZFS:0000034 ! Hatching:Pec-fin created_by: Melissa Haendel creation_date: 2009-03-23T02:13:25Z [Term] id: ZFA:0001688 name: corneal primordium namespace: zebrafish_anatomy def: "Portion of tissue that is part of the eye and gives rise to the mature, fully layered cornea." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-061010-3] xref: TAO:0002188 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000033 ! Hatching:Long-pec relationship: part_of ZFA:0000107 ! eye relationship: start ZFS:0000029 ! Pharyngula:Prim-5 created_by: Melissa Haendel creation_date: 2009-03-23T04:36:20Z [Term] id: ZFA:0001689 name: anatomical line namespace: zebrafish_anatomy def: "Non-material anatomical entity of one dimension, which forms a boundary of an anatomical surface or is a modulation of an anatomical surface." [CARO:MAH, ORCiD:0000-0001-9114-8737] xref: CARO:0000008 xref: TAO:0001837 is_a: ZFA:0100000 ! zebrafish anatomical entity relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000001 ! Zygote:1-cell created_by: Melissa Haendel creation_date: 2009-04-30T02:46:34Z [Term] id: ZFA:0001690 name: groove namespace: zebrafish_anatomy def: "Anatomical structure that delineates a furrow or depression in an organ or tissue." [GOC:mh, ORCiD:0000-0001-9114-8737] xref: TAO:0001838 is_a: ZFA:0000037 ! anatomical structure relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000001 ! Zygote:1-cell created_by: Melissa Haendel creation_date: 2009-04-30T02:48:53Z [Term] id: ZFA:0001691 name: cerebellar granule cell namespace: zebrafish_anatomy def: "Granule cell that is part of the cerebellum." [CL:curator] subset: cell_slim xref: CL:0001031 xref: TAO:0002182 is_a: ZFA:0009070 ! granule cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000358 ! granular layer corpus cerebelli relationship: part_of ZFA:0000766 ! granular layer valvula cerebelli relationship: start ZFS:0000000 ! Unknown created_by: Melissa Haendel creation_date: 2009-04-30T03:18:48Z [Term] id: ZFA:0001692 name: hindbrain commissure namespace: zebrafish_anatomy def: "CNS white matter that crosses the midline within the hindbrain." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-090417-11] xref: TAO:0002199 is_a: ZFA:0001682 ! white matter relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000029 ! hindbrain relationship: start ZFS:0000030 ! Pharyngula:Prim-15 created_by: Melissa Haendel creation_date: 2009-06-18T12:33:21Z [Term] id: ZFA:0001693 name: chondral bone namespace: zebrafish_anatomy def: "Replacement bone that forms within or surrounding a cartilaginous skeletal element." [GOC:mh, ORCiD:0000-0001-9114-8737] is_a: ZFA:0001628 ! replacement bone relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Melissa Haendel creation_date: 2009-07-29T11:34:33Z [Term] id: ZFA:0001694 name: olfactory granule cell namespace: zebrafish_anatomy def: "Granule cell that is part of the olfactory bulb." [CL:curator] subset: cell_slim xref: CL:0000626 xref: TAO:0002211 is_a: ZFA:0009070 ! granule cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000402 ! olfactory bulb relationship: start ZFS:0000000 ! Unknown created_by: Melissa Haendel creation_date: 2009-04-30T03:21:40Z [Term] id: ZFA:0001695 name: dorsolateral motor nucleus of vagal nerve namespace: zebrafish_anatomy def: "Motor nucleus of vagal nerve that is located within the dorsolateral portion of rhombomere 8." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-090417-11] synonym: "dlX" EXACT [] xref: TAO:0002192 is_a: ZFA:0000387 ! motor nucleus of vagal nerve relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000030 ! Pharyngula:Prim-15 created_by: Melissa Haendel creation_date: 2009-08-04T10:42:49Z [Term] id: ZFA:0001696 name: medial motor nucleus of vagal nerve namespace: zebrafish_anatomy def: "Motor nucleus of vagal nerve that is located within the medial portion of rhombomere 8." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-090417-11] synonym: "mmX" EXACT [] xref: TAO:0002207 is_a: ZFA:0000387 ! motor nucleus of vagal nerve relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000033 ! Hatching:Long-pec created_by: Melissa Haendel creation_date: 2009-08-04T10:45:00Z [Term] id: ZFA:0001697 name: octaval nerve motor nucleus namespace: zebrafish_anatomy def: "Hindbrain nucleus which consists of cell bodies whose axons exit the hindbrain via cranial nerve VIII and innervate hair cells of the lateral line and inner ear. The neurons of these nuclei are unusual in that they extend both contra- and ipsilateral dendrites." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-061229-17] synonym: "cranial nerve VIII motor nucleus" EXACT [] synonym: "octaval nerve motor nuclei" EXACT PLURAL [] synonym: "OLe" EXACT [] xref: TAO:0002174 is_a: ZFA:0001658 ! hindbrain nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown created_by: Melissa Haendel creation_date: 2009-08-04T01:04:59Z [Term] id: ZFA:0001698 name: rostral octaval nerve motor nucleus namespace: zebrafish_anatomy def: "Octaval nerve motor nucleus that is initially located within rhombomere 6." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-061229-17] synonym: "REN" EXACT [ZFIN:ZDB-PUB-061229-17] synonym: "ROLE" EXACT [] synonym: "rostral cranial nerve VIII motor nucleus" EXACT [] synonym: "rostral efferent nuclei" RELATED PLURAL [ZFIN:ZDB-PUB-061229-17] xref: TAO:0002175 is_a: ZFA:0001697 ! octaval nerve motor nucleus relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Melissa Haendel creation_date: 2009-08-04T01:21:34Z [Term] id: ZFA:0001699 name: caudal octaval nerve motor nucleus namespace: zebrafish_anatomy def: "Octaval nerve motor nucleus that is initially located within rhombomere 7." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-061229-17] synonym: "caudal efferent nuclei" RELATED PLURAL [ZFIN:ZDB-PUB-061229-17] synonym: "CEN" EXACT [ZFIN:ZDB-PUB-061229-17] synonym: "RELL" EXACT [] synonym: "rostral cranial nerve VIII motor nucleus" EXACT [] xref: TAO:0002176 is_a: ZFA:0001697 ! octaval nerve motor nucleus relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Melissa Haendel creation_date: 2009-08-04T01:24:26Z [Term] id: ZFA:0001700 name: tunica externa swim bladder namespace: zebrafish_anatomy def: "Multi-tissue structure that is the external layer of the swim bladder that is covered by the peritoneum, and made of elastic fibres and ichthyocol (short needles of collagen)." [http://www.briancoad.com/Dictionary/T.htm] xref: TAO:0002245 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000076 ! swim bladder relationship: start ZFS:0000000 ! Unknown created_by: Melissa Haendel creation_date: 2009-08-05T12:54:11Z [Term] id: ZFA:0001701 name: tunica interna swim bladder namespace: zebrafish_anatomy def: "Multi-tissue structure that is the internal layer of the swim bladder and is comprised of thin endoderm and a smooth muscle layer called the muscularis mucosa with longitudinal and circular fibres with some collagen." [http://www.briancoad.com/Dictionary/T.htm] xref: TAO:0002246 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000076 ! swim bladder relationship: start ZFS:0000000 ! Unknown created_by: Melissa Haendel creation_date: 2009-08-05T12:55:22Z [Term] id: ZFA:0001702 name: apical ectodermal ridge namespace: zebrafish_anatomy def: "Proliferative region that is part of the developing fin fold or fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0002146 is_a: ZFA:0000098 ! proliferative region relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000030 ! Pharyngula:Prim-15 created_by: Melissa Haendel creation_date: 2009-08-05T02:38:05Z [Term] id: ZFA:0001703 name: epidermal placode namespace: zebrafish_anatomy def: "Portion of tissue that is a thickening and reshaping of the epidermal basal stratum cells beneath which fibroblasts accumulate to form the scale primordium." [ZFIN:ZDB-PUB-081008-12] xref: TAO:0002195 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0001180 ! epidermal basal stratum relationship: start ZFS:0000041 ! Larval:Days 21-29 created_by: Melissa Haendel creation_date: 2009-08-05T03:22:18Z [Term] id: ZFA:0001704 name: scale primordium namespace: zebrafish_anatomy def: "A portion of tissue that gives rise to the scale. At the initial stages the primordium is composed of an accumulation of fibroblast below the basil epidermis. As the primordium develops the epidermis over the fibroblast alters: the basal epidermal cells become cuboidal and narrow, the collagen matrix remodels and the hemidesmosomes disappear." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-081008-12] synonym: "scale placode" RELATED [] synonym: "scale primordia " EXACT PLURAL [] xref: TAO:0002242 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0001119 ! dermis relationship: start ZFS:0000041 ! Larval:Days 21-29 created_by: Melissa Haendel creation_date: 2009-08-05T03:35:05Z [Term] id: ZFA:0001705 name: endolymphatic duct namespace: zebrafish_anatomy def: "Duct that is part of the inner ear and connects to the semicircular canals ending in the endolymphatic sac." [http://en.wikipedia.org/wiki/Endolymphatic_duct, ZFIN:ZDB-PUB-090112-20] xref: TAO:0002194 is_a: ZFA:0005171 ! duct relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000217 ! inner ear relationship: start ZFS:0000000 ! Unknown created_by: Melissa Haendel creation_date: 2009-08-11T09:15:55Z [Term] id: ZFA:0001706 name: Purkinje cell layer corpus cerebelli namespace: zebrafish_anatomy def: "Portion of tissue that is part of the corpus cerebelli and contains Purkinje cells." [ZFIN:ZDB-PUB-090422-9] xref: TAO:0002240 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000188 ! corpus cerebelli relationship: start ZFS:0000000 ! Unknown created_by: Melissa Haendel creation_date: 2009-08-11T09:41:06Z [Term] id: ZFA:0001707 name: brainstem namespace: zebrafish_anatomy def: "Multi-tissue structure that has as its parts the medulla oblongata of the hindbrain and the tegmentum of the midbrain." [ISBN:3764351209] xref: TAO:0002156 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000012 ! central nervous system relationship: start ZFS:0000000 ! Unknown created_by: Melissa Haendel creation_date: 2009-08-13T01:39:24Z [Term] id: ZFA:0001708 name: cerebellar white matter namespace: zebrafish_anatomy def: "CNS white matter that is part of the cerebellum." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "cerebellar tracts/commissures" EXACT PLURAL [] xref: TAO:0002183 is_a: ZFA:0001682 ! white matter relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000100 ! cerebellum relationship: start ZFS:0000000 ! Unknown created_by: Melissa Haendel creation_date: 2009-08-13T01:48:48Z [Term] id: ZFA:0001709 name: Purkinje cell layer valvula cerebelli namespace: zebrafish_anatomy def: "Portion of tissue that is part of the valvula cerebelli and contains Purkinje cells." [ZFIN:ZDB-PUB-090422-9] xref: TAO:0002241 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000603 ! valvula cerebelli relationship: start ZFS:0000000 ! Unknown created_by: Melissa Haendel creation_date: 2009-08-13T03:00:08Z [Term] id: ZFA:0001710 name: mossy fiber namespace: zebrafish_anatomy def: "Portion of tissue that consists of afferent axons from the spinal cord, sensory medullary nuclei, reticular nuclei and dorsal tegmental nuclei into the corpus cerebelli and valvula cerebelli, where they synapse within the granule cell layer." [ISBN:3764351209, ZFIN:ZDB-PUB-090422-9] synonym: "mossy fibers" EXACT PLURAL [] xref: TAO:0002210 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000188 ! corpus cerebelli relationship: part_of ZFA:0000603 ! valvula cerebelli relationship: start ZFS:0000000 ! Unknown created_by: Melissa Haendel creation_date: 2009-08-13T03:02:35Z [Term] id: ZFA:0001711 name: climbing fiber namespace: zebrafish_anatomy def: "Portion of tissue that consists of afferent axons from the inferior olive and synapsing with Purkinje cells within the molecular layer of the valvula cerebelli and corpus cerebelli." [ISBN:3764351209, ZFIN:ZDB-PUB-090422-9] synonym: "climbing fibers" EXACT PLURAL [] xref: TAO:0002185 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000188 ! corpus cerebelli relationship: part_of ZFA:0000603 ! valvula cerebelli relationship: start ZFS:0000000 ! Unknown created_by: Melissa Haendel creation_date: 2009-08-13T03:18:48Z [Term] id: ZFA:0001712 name: presumptive bulbus arteriosus namespace: zebrafish_anatomy def: "Portion of tissue that is part of the heart tube and will become the bulbus arteriosus." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0002230 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0000818 ! vagal neural crest relationship: end ZFS:0000031 ! Pharyngula:Prim-25 relationship: part_of ZFA:0000360 ! heart tube relationship: start ZFS:0000029 ! Pharyngula:Prim-5 created_by: Melissa Haendel creation_date: 2009-08-31T11:25:06Z [Term] id: ZFA:0001713 name: parallel fiber namespace: zebrafish_anatomy def: "Portion of tissue that consists of axons of cerebellar granule cells that synapse onto Purkinje cell dendrites." [ISBN:3764351209, ZFIN:ZDB-PUB-090422-9] synonym: "parallel fibers" EXACT PLURAL [] xref: TAO:0002218 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000394 ! molecular layer corpus cerebelli relationship: part_of ZFA:0000913 ! molecular layer valvula cerebelli relationship: start ZFS:0000000 ! Unknown created_by: Melissa Haendel creation_date: 2009-08-13T04:32:51Z [Term] id: ZFA:0001714 name: presumptive ventral mesoderm namespace: zebrafish_anatomy def: "Portion of presumptive mesoderm fated to become ventral mesoderm. Determined by fate mapping." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] xref: TAO:0002235 is_a: ZFA:0001377 ! presumptive mesoderm relationship: end ZFS:0000019 ! Gastrula:Shield relationship: start ZFS:0000014 ! Blastula:Sphere created_by: Melissa Haendel creation_date: 2009-08-24T11:02:45Z [Term] id: ZFA:0001715 name: otic vesicle protrusion namespace: zebrafish_anatomy def: "Portion of tissue within the otic vesicle that consists of a thin layer of otic epithelium covering a finger-shaped core of acellular matrix." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-090330-11] xref: TAO:0002215 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000035 ! Larval:Protruding-mouth relationship: part_of ZFA:0000051 ! otic vesicle relationship: start ZFS:0000032 ! Pharyngula:High-pec created_by: Melissa Haendel creation_date: 2009-08-25T10:45:23Z [Term] id: ZFA:0001716 name: otic vesicle ventral protrusion namespace: zebrafish_anatomy def: "Otic vesicle protrusion that is initially ventrally located and then fuses with the lateral protrusion, giving rise to the pillar of the lateral semicircular canal." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-090330-11] xref: TAO:0002216 is_a: ZFA:0001715 ! otic vesicle protrusion relationship: end ZFS:0000035 ! Larval:Protruding-mouth relationship: start ZFS:0000034 ! Hatching:Pec-fin created_by: Melissa Haendel creation_date: 2009-08-25T10:53:24Z [Term] id: ZFA:0001717 name: pillar of the semicircular canal namespace: zebrafish_anatomy def: "Portion of tissue around which the semicircular canals flow." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-383] xref: TAO:0002223 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000431 ! semicircular canal relationship: start ZFS:0000035 ! Larval:Protruding-mouth created_by: Melissa Haendel creation_date: 2009-08-25T10:57:52Z [Term] id: ZFA:0001718 name: presumptive atrium heart tube namespace: zebrafish_anatomy def: "Multi-tissue structure that is part of the heart tube and will become the cardiac atrium." [ZFIN:ZDB-PUB-080218-11] xref: TAO:0002228 is_a: ZFA:0001488 ! multi-tissue structure relationship: develops_from ZFA:0001721 ! presumptive atrium primitive heart tube relationship: end ZFS:0000031 ! Pharyngula:Prim-25 relationship: part_of ZFA:0000360 ! heart tube relationship: start ZFS:0000029 ! Pharyngula:Prim-5 created_by: Melissa Haendel creation_date: 2009-08-25T12:20:59Z [Term] id: ZFA:0001719 name: presumptive cardiac ventricle heart tube namespace: zebrafish_anatomy def: "Multi-tissue structure that is part of the heart tube and will become the cardiac ventricle." [ZFIN:ZDB-PUB-080218-11] xref: TAO:0002231 xref: ZFA:0002231 is_a: ZFA:0001488 ! multi-tissue structure relationship: develops_from ZFA:0001720 ! presumptive cardiac ventricle primitive heart tube relationship: end ZFS:0000031 ! Pharyngula:Prim-25 relationship: part_of ZFA:0000360 ! heart tube relationship: start ZFS:0000029 ! Pharyngula:Prim-5 created_by: Melissa Haendel creation_date: 2009-08-25T12:21:18Z [Term] id: ZFA:0001720 name: presumptive cardiac ventricle primitive heart tube namespace: zebrafish_anatomy def: "Multi-tissue structure that is part of the primitive heart tube and will become the cardiac ventricle." [ZFIN:ZDB-PUB-080218-11] xref: TAO:0002232 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0000149 ! primitive heart tube relationship: start ZFS:0000028 ! Segmentation:26+ somites created_by: Melissa Haendel creation_date: 2009-08-25T01:10:23Z [Term] id: ZFA:0001721 name: presumptive atrium primitive heart tube namespace: zebrafish_anatomy def: "Multi-tissue structure that is part of the primitive heart tube and will become the cardiac atrium." [ZFIN:ZDB-PUB-080218-11] xref: TAO:0002229 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0000149 ! primitive heart tube relationship: start ZFS:0000028 ! Segmentation:26+ somites created_by: Melissa Haendel creation_date: 2009-08-25T01:10:28Z [Term] id: ZFA:0001722 name: presumptive sinus venosus namespace: zebrafish_anatomy def: "Portion of tissue that is part of the heart tube and will become the sinus venosus." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0002234 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000031 ! Pharyngula:Prim-25 relationship: part_of ZFA:0000360 ! heart tube relationship: start ZFS:0000029 ! Pharyngula:Prim-5 created_by: Melissa Haendel creation_date: 2009-08-31T11:40:57Z [Term] id: ZFA:0001723 name: presumptive atrioventricular canal namespace: zebrafish_anatomy def: "Portion of tissue that is part of the heart tube and will become the atrioventricular canal." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0002227 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000031 ! Pharyngula:Prim-25 relationship: part_of ZFA:0000360 ! heart tube relationship: start ZFS:0000031 ! Pharyngula:Prim-25 created_by: Melissa Haendel creation_date: 2009-08-31T11:57:36Z [Term] id: ZFA:0001724 name: presumptive endocardium namespace: zebrafish_anatomy def: "Portion of tissue that is part of the heart tube and will become the endocardium." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0002233 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000031 ! Pharyngula:Prim-25 relationship: part_of ZFA:0000360 ! heart tube relationship: start ZFS:0000029 ! Pharyngula:Prim-5 created_by: Melissa Haendel creation_date: 2009-08-31T01:21:44Z [Term] id: ZFA:0001725 name: immature Schwann cell namespace: zebrafish_anatomy def: "A glial cell that develops from a Schwann cell precursor. The immature Schwann cell is embedded among neurons (axons) with minimal extracellular spaces separating them from nerve cell membranes and has a basal lamina. Cells can survive without an axon present. Immature Schwann cell can be found communally ensheathing large groups of axons." [CL:curator, ISBN:0721662544] comment: Range covers Schwann cell precursor and immature Schwann cell, should be split and put into CL. subset: cell_slim xref: CL:0002377 xref: TAO:0002203 is_a: ZFA:0009147 ! glial cell (sensu Vertebrata) relationship: end ZFS:0000032 ! Pharyngula:High-pec relationship: part_of ZFA:0000142 ! peripheral nervous system relationship: start ZFS:0000025 ! Segmentation:10-13 somites created_by: Melissa Haendel creation_date: 2009-09-08T02:10:35Z [Term] id: ZFA:0005000 name: basal communicating artery namespace: zebrafish_anatomy def: "Artery that extends horizontally across the brain midline which is fed by the caudal division of the internal carotid artery. Three pairs of central arteries extend from the basal communicating artery (BCA), the anterior, middle and posterior mesencephalic central arteries. The BCA does not correspond to the anterior communicating artery of the mammalian circle of Willis. The BCA is unpaired." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5] synonym: "BCA" EXACT [] xref: TAO:0005000 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0005297 ! cranial blood vessel relationship: start ZFS:0000031 ! Pharyngula:Prim-25 [Term] id: ZFA:0005001 name: posterior communicating artery namespace: zebrafish_anatomy def: "An artery that connects caudal division of the internal carotid artery and the basal communicating artery to the basilar artery." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5] synonym: "caudal communicating segment" EXACT [] synonym: "PCA" EXACT [] synonym: "PCS" EXACT [] synonym: "posterior communicating segment of the basilar artery" EXACT [] xref: TAO:0005001 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000031 ! Pharyngula:Prim-25 [Term] id: ZFA:0005002 name: basilar artery namespace: zebrafish_anatomy def: "Artery that runs along the ventral keel of the hindbrain. It lies between the primordial hindbrain channels(PHBC). It irrigates the hindbrain and is connected, through the hindbrain, to the PHBC by the central arteries." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-110426-11] synonym: "BA" EXACT [] xref: TAO:0005002 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005297 ! cranial blood vessel relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0005003 name: pharyngeal vasculature namespace: zebrafish_anatomy def: "Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the pharyngeal region." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "branchial basket" RELATED [] synonym: "branchial vasculature" EXACT [] xref: TAO:0005003 is_a: ZFA:0005249 ! vasculature relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001267 ! cranial vasculature relationship: part_of ZFA:0001306 ! pharyngeal arch relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005004 name: aortic arch namespace: zebrafish_anatomy def: "Artery that is part of the pharyngeal arches." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5] synonym: "aortic arches" EXACT PLURAL [] synonym: "branchial aortic arches " EXACT PLURAL [ZFIN:ZDB-PUB-080512-6] xref: TAO:0005004 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005003 ! pharyngeal vasculature relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0005005 name: aortic arch 1 namespace: zebrafish_anatomy def: "Aortic arch that is part of pharyngeal arch 1. The paired aortic arch 1 arteries branch off of the ventral aorta, and empty into the right and left lateral dorsal aorta." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5] synonym: "AA1" EXACT [] synonym: "mandibular aortic arch" EXACT [] xref: TAO:0005005 is_a: ZFA:0005004 ! aortic arch relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0001612 ! pharyngeal arch 1 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0005006 name: aortic arch 2 namespace: zebrafish_anatomy def: "Aortic arch that is part of pharyngeal arch 2. Aortic arch 2 is paired and is a vestigial structure." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5] synonym: "AA2" EXACT [] synonym: "hyoid aortic arch" EXACT [] xref: TAO:0005006 is_a: ZFA:0005004 ! aortic arch relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001611 ! pharyngeal arch 2 relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0005007 name: aortic arch 3 namespace: zebrafish_anatomy def: "Aortic arch that is part of pharyngeal arch 3. The paired aortic arch 3 arteries branch directly from the ventral aorta to the lateral dorsal aorta, and are retained as the branchial arteries providing circulation through the gills in the adult." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5] synonym: "AA3" EXACT [] xref: TAO:0005007 is_a: ZFA:0005004 ! aortic arch relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001606 ! pharyngeal arch 3 relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0005008 name: aortic arch 4 namespace: zebrafish_anatomy def: "Aortic arch that is part of pharyngeal arch 4. The paired aortic arch 4 arteries branch directly from the ventral aorta to the lateral dorsal aorta, and are retained as the branchial arteries providing circulation through the gills in the adult." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5] synonym: "AA4" EXACT [] xref: TAO:0005008 is_a: ZFA:0005004 ! aortic arch relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001607 ! pharyngeal arch 4 relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0005009 name: aortic arch 5 namespace: zebrafish_anatomy def: "Aortic arch that is part of pharyngeal arch 5. Aortic arch 5 artery is paired and has a common trunk with aortic arch 6 from the ventral aorta, and drains via a separate branch of the lateral dorsal aorta. Aortic arches 5 and 6 supply the trunk and tail with oxygenated blood." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5] synonym: "AA5" EXACT [] xref: TAO:0005009 is_a: ZFA:0005004 ! aortic arch relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001608 ! pharyngeal arch 5 relationship: start ZFS:0000034 ! Hatching:Pec-fin [Term] id: ZFA:0005010 name: mid cerebral vein namespace: zebrafish_anatomy def: "The mesencephalic veins (MsV) enter the mid cerebral veins (MCeV) at the dorsal midline. THe MCeVs originate at the dorsal midline, proceed laterally in a ventral direction to drain into the paired primordial midbrain channels (PHBC)." [GOC:cvs, http://zfin.org/zf_info/zfbook/stages/hatch.html, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5] synonym: "MCeV" EXACT [] synonym: "MeCV" EXACT [] synonym: "mid-cerebral vein" EXACT [] synonym: "middle cerebral vein" EXACT [] xref: TAO:0005010 is_a: ZFA:0000082 ! vein relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0005297 ! cranial blood vessel relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0005011 name: pseudobranchial artery namespace: zebrafish_anatomy def: "A vascular loop attached to the efferent part of the mandibular arch that forms at 3.5 dpf." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5] synonym: "pseudobranchial arteries" EXACT PLURAL [] xref: TAO:0005011 is_a: ZFA:0000005 ! artery relationship: develops_from ZFA:0005005 ! aortic arch 1 relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000035 ! Larval:Protruding-mouth [Term] id: ZFA:0005012 name: afferent filamental artery namespace: zebrafish_anatomy def: "Artery that enters the gill filament." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "AFA" EXACT [] synonym: "afferent filamental arteries" EXACT PLURAL [] xref: TAO:0005012 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000666 ! filamental artery relationship: part_of ZFA:0000716 ! afferent branchial artery relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005013 name: concurrent branch afferent branchial artery namespace: zebrafish_anatomy def: "The branch of the afferent branchial artery that continues posterodorsally." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5] synonym: "CCB" EXACT [] xref: TAO:0005013 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000716 ! afferent branchial artery relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005014 name: recurrent branch afferent branchial artery namespace: zebrafish_anatomy def: "The anteroventral proceeding branch of the afferent branchial artery." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5] synonym: "RCB" EXACT [] synonym: "recurrent branch afferent branchial arteries" EXACT PLURAL [] xref: TAO:0005014 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000716 ! afferent branchial artery relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005015 name: afferent lamellar arteriole namespace: zebrafish_anatomy def: "Arterioles which take blood from the afferent filamental arteries to the gill lamella." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "afferent lamellar arterioles" EXACT PLURAL [] synonym: "AFL" EXACT [] xref: TAO:0005015 is_a: ZFA:0005255 ! arteriole relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000211 ! gill lamella relationship: part_of ZFA:0005012 ! afferent filamental artery relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005016 name: aortic arch 6 namespace: zebrafish_anatomy def: "Aortic arch that is part of pharyngeal arch 6. Aortic arch 6 artery is paired and has a common trunk with aortic arch 5 from the ventral aorta, and drains via a separate branch of the lateral dorsal aorta. Aortic arches 5 and 6 supply the trunk and tail with oxygenated blood." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5] synonym: "AA6" EXACT [] xref: TAO:0005016 is_a: ZFA:0005004 ! aortic arch relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0001609 ! pharyngeal arch 6 relationship: start ZFS:0000034 ! Hatching:Pec-fin [Term] id: ZFA:0005017 name: primordial midbrain channel namespace: zebrafish_anatomy def: "The vessel between the anterior cerebral vein and the mid cerebral vein." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5] synonym: "PMBC" EXACT [] xref: TAO:0005017 is_a: ZFA:0000082 ! vein relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0005297 ! cranial blood vessel relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0005018 name: efferent filamental artery namespace: zebrafish_anatomy def: "Artery that exits the gill filament." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "EFA" EXACT [] xref: TAO:0005018 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000202 ! efferent branchial artery relationship: part_of ZFA:0000666 ! filamental artery relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005019 name: efferent lamellar arteriole namespace: zebrafish_anatomy def: "Arterioles which take blood from the gill lamella to the efferent filamental arteries." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "efferent lamellar arterioles" EXACT PLURAL [] synonym: "ELA" EXACT [] xref: TAO:0005019 is_a: ZFA:0005255 ! arteriole relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000211 ! gill lamella relationship: part_of ZFA:0005018 ! efferent filamental artery relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005020 name: central artery namespace: zebrafish_anatomy def: "Artery that irrigates the forebrain and midbrain." [ZFIN:ZDB-PUB-010205-5] synonym: "CtA" EXACT [] xref: TAO:0005020 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000099 ! brain vasculature relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0005021 name: cerebellar central artery namespace: zebrafish_anatomy def: "Extend upward from the PCS, branch to provide an arterial feed to the hindbrain, then drain back down into the PHBC." [ZFIN:ZDB-PUB-010205-5] synonym: "CCtA" EXACT [] xref: TAO:0005021 is_a: ZFA:0005020 ! central artery relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000035 ! Larval:Protruding-mouth [Term] id: ZFA:0005022 name: opercular artery namespace: zebrafish_anatomy def: "The opercular artery arises from the hyoid stump on the first aortic arch, then follows the lateral margin of the operculum (gill covering) ventrally to reconnect into the proximal part of the first aortic arch." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5] synonym: "external carotid artery" RELATED [] synonym: "ORA" EXACT [] xref: TAO:0005022 is_a: ZFA:0000005 ! artery relationship: develops_from ZFA:0005005 ! aortic arch 1 relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0005023 name: hematopoietic system namespace: zebrafish_anatomy def: "System responsible for generating hematopoietic cells." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005023 is_a: ZFA:0001439 ! anatomical system relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0005024 name: trunk vasculature namespace: zebrafish_anatomy def: "Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around trunk." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005024 is_a: ZFA:0005249 ! vasculature relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001115 ! trunk relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0005025 name: dorsal longitudinal anastomotic vessel namespace: zebrafish_anatomy def: "Paired trunk vessels that run medially along the dorsal-most portion of the trunk and post-vent region. The DLAVs are formed by the longitudinal anastomoses of the intersegmental vessels to form a right and left pair of dorsal longitudinal anastomotic vessels. These paired vessels remodel to form a single plexiform vessel beginning at 3dpf continuing until after 7dpf. The basilar artery connects to the DLAVs at the caudal end of the medulla oblongata. In the early embryo (2.5-3.5 dpf) the primitive hindbrain channels also connect to the DLAV." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5] comment: Eventually half of the ISVs will carry blood from the aorta to the DLAVs, and half from the DLAV to the posterior cardinal vein. synonym: "DLAV" EXACT [] xref: TAO:0005025 is_a: ZFA:0005314 ! blood vessel relationship: develops_from ZFA:0001285 ! intersegmental vessel relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0001073 ! axial vasculature relationship: part_of ZFA:0005024 ! trunk vasculature relationship: part_of ZFA:0005037 ! post-vent vasculature relationship: start ZFS:0000031 ! Pharyngula:Prim-25 [Term] id: ZFA:0005026 name: primary head sinus namespace: zebrafish_anatomy def: "Main route for venous drainage of the anterior and mid cerebral veins as well as portions of the primordial hindbrain channel." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5] synonym: "lateral head vein" EXACT [] synonym: "PHS" EXACT [] xref: TAO:0005026 is_a: ZFA:0000082 ! vein relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0005297 ! cranial blood vessel relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0005027 name: posterior cerebral vein namespace: zebrafish_anatomy def: "Vein that drains the dorsal longitudinal vessel and the caudal portions of the venous capillary network of the medulla oblongata." [ZFIN:ZDB-PUB-010205-5] synonym: "caudal cerebral vein" EXACT [] synonym: "PCeV" EXACT [] xref: TAO:0005027 is_a: ZFA:0000082 ! vein relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000099 ! brain vasculature relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0005028 name: ventral wall of dorsal aorta namespace: zebrafish_anatomy def: "Region where blood progenitor markers are expressed. Probable site of definitive hematopoiesis between 36hpf and 4dpf." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "AGM" RELATED [] synonym: "aorta gonad mesonephros region" EXACT [] synonym: "DA roof" RELATED [] synonym: "DA-PCV joint " EXACT [] synonym: "dorsal aorta - posterior cardinal vein joint" EXACT [ZFIN:ZDB-PUB-061227-29] synonym: "DP joint" EXACT [] xref: TAO:0005028 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000014 ! dorsal aorta relationship: part_of ZFA:0005023 ! hematopoietic system relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0005029 name: rostral blood island namespace: zebrafish_anatomy def: "Hematopoietic tissue derived from the cephalic mesoderm. Predominantly produces myeloid cells." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "anterior myeloid compartment" RELATED [] synonym: "RBI" EXACT [] xref: TAO:0005029 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0005041 ! anterior lateral plate mesoderm relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0005023 ! hematopoietic system relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0005030 name: dorsal ciliary vein namespace: zebrafish_anatomy def: "Vein that branches off the nasal ciliary artery. Initially, at 2dpf, the dorsal ciliary vein (DCV) drains into the primordial midbrain channel (PMBC) or the PMBC/PHBC junction. Later, by 3.5dpf, the DCV drains into the optic choroid vascular plexus. The dorsal branch of the inner optic circle drains into the DCV." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5] synonym: "DCV" EXACT [] xref: TAO:0005030 is_a: ZFA:0000082 ! vein relationship: develops_from ZFA:0005082 ! dorsal branch nasal ciliary artery relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0005297 ! cranial blood vessel relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0005031 name: dorsal longitudinal vein namespace: zebrafish_anatomy def: "Vessel that connects to the primitive hindbrain channel and the basilar artery at the caudal end of the medulla oblongata." [ZFIN:ZDB-PUB-010205-5] synonym: "DLV" EXACT [] xref: TAO:0005031 is_a: ZFA:0000082 ! vein relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000099 ! brain vasculature relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0005032 name: optic vein namespace: zebrafish_anatomy def: "Vein that connects to the hyaloid vein that drains the eye. External to eye." [ZFIN:ZDB-PUB-010205-5] synonym: "OV" EXACT [] xref: TAO:0005032 is_a: ZFA:0000082 ! vein relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0005033 name: vertebral artery namespace: zebrafish_anatomy def: "Is an pair of arteries that form from the intersegmental vessels at the level of the base of the spinal cord, adjacent to the myotome." [ZFIN:ZDB-PUB-010205-5] synonym: "vertebral arteries" EXACT PLURAL [] xref: TAO:0005033 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000036 ! Larval:Day 4 [Term] id: ZFA:0005034 name: parachordal vessel namespace: zebrafish_anatomy def: "Vessels run longitudinally along the horizontal myoseptum. These vessels are not functional until after lumenization which occurs near 4 dpf." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-030908-4] synonym: "PAV" EXACT [] xref: TAO:0005034 is_a: ZFA:0000082 ! vein relationship: develops_from ZFA:0000477 ! posterior cardinal vein relationship: develops_from ZFA:0001057 ! intersegmental vein relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0005024 ! trunk vasculature relationship: part_of ZFA:0005037 ! post-vent vasculature relationship: start ZFS:0000036 ! Larval:Day 4 [Term] id: ZFA:0005035 name: subintestinal vein namespace: zebrafish_anatomy def: "Vein that drains the vascular plexus of the midgut and hindgut. At early stages the subintestinal vein (SIV) drains into the PCV and the CCV. At later stages the SIV drains into the hepatic sinusoid. The SIV are begin as paired veins. After 4dpf the remains of the left SIV forms separate segments that empty into the right SIV and eventually merge with the right. At 3dpf the rostral end of left SIV begins to form the reticular hepatic sinusoids. The portion of the left SIV caudal to the hepatic sinusoid forms the hepatic portal vein." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5] synonym: "SIV" EXACT [] synonym: "vitelline vein" EXACT [] xref: TAO:0005035 is_a: ZFA:0000082 ! vein relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0005024 ! trunk vasculature relationship: start ZFS:0000034 ! Hatching:Pec-fin [Term] id: ZFA:0005036 name: supraintestinal artery namespace: zebrafish_anatomy def: "A continuation of the anterior mesenteric artery, which branches out from the dorsal aorta just caudal to the pronephric glomus." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5] synonym: "SIA" EXACT [] xref: TAO:0005036 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000035 ! Larval:Protruding-mouth [Term] id: ZFA:0005037 name: post-vent vasculature namespace: zebrafish_anatomy def: "Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the post-vent region. This is frequently referred to as tail vasculature in the zebrafish community." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "tail vasculature" RELATED [] xref: TAO:0005037 is_a: ZFA:0005249 ! vasculature relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001117 ! post-vent region relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005038 name: supraintestinal vein namespace: zebrafish_anatomy synonym: "" RELATED [] synonym: "supraintestinal veins" EXACT PLURAL [] xref: TAO:0005038 is_a: ZFA:0000082 ! vein relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0005024 ! trunk vasculature relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0005039 name: anterior lateral mesoderm namespace: zebrafish_anatomy synonym: "ALM" EXACT [] xref: TAO:0005039 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0001065 ! lateral mesoderm relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0005040 name: posterior lateral mesoderm namespace: zebrafish_anatomy synonym: "PLM" EXACT [] xref: TAO:0005040 is_a: ZFA:0000041 ! mesoderm relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0001065 ! lateral mesoderm relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0005041 name: anterior lateral plate mesoderm namespace: zebrafish_anatomy synonym: "ALPM" EXACT [] xref: TAO:0005041 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0000121 ! lateral plate mesoderm relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0005042 name: posterior lateral plate mesoderm namespace: zebrafish_anatomy synonym: "PLPM" EXACT [] xref: TAO:0005042 is_a: ZFA:0000041 ! mesoderm relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000121 ! lateral plate mesoderm relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0005043 name: nevus namespace: zebrafish_anatomy def: "An ectopic melanophore accumulation analogous to a nevi (mole) in humans." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "f-nevi" EXACT [] synonym: "naevus" EXACT [] xref: TAO:0005043 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001119 ! dermis relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005044 name: optic artery namespace: zebrafish_anatomy def: "The artery that carries blood to the eye. It branches from the primitive internal carotid artery and enters the eye ventrally through the optic fissure." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5] synonym: "optic arteries" EXACT PLURAL [] xref: TAO:0005044 is_a: ZFA:0000005 ! artery is_a: ZFA:0007057 ! ocular blood vessel relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0005045 name: hyaloid artery namespace: zebrafish_anatomy def: "Artery that is internal to the eye." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5] synonym: "hyaloid arteries" EXACT PLURAL [] xref: TAO:0005045 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005046 ! hyaloid vessel relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0005046 name: hyaloid vessel namespace: zebrafish_anatomy def: "Vessels that are associated with the posterior region of the lens." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-050701-15] synonym: "hyaloid vasculature" RELATED [] synonym: "hyaloid vessels" EXACT PLURAL [] xref: TAO:0005046 is_a: ZFA:0007057 ! ocular blood vessel relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0005047 name: hyaloid vein namespace: zebrafish_anatomy def: "Vein internal to the eye." [ZFIN:ZDB-PUB-010205-5] synonym: "hyaloid veins" EXACT PLURAL [] xref: TAO:0005047 is_a: ZFA:0000082 ! vein relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005046 ! hyaloid vessel relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0005048 name: primitive prosencephalic artery namespace: zebrafish_anatomy def: "Vessel that branches from cranial division of the internal carotid artery, extending laterally around the rostral end of the head." [ZFIN:ZDB-PUB-010205-5] synonym: "PPrA" EXACT [] xref: TAO:0005048 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000033 ! Hatching:Long-pec relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0005049 name: prosencephalic artery namespace: zebrafish_anatomy def: "After the primitive prosencephalic artery forms it becomes disconnected from the cranial division of the internal carotid artery and instead it connects to the anterior mesencephalic central artery and the communicating vessels of the palatocerebral artery." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "PrA" EXACT [] xref: TAO:0005049 is_a: ZFA:0000005 ! artery relationship: develops_from ZFA:0005048 ! primitive prosencephalic artery relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0005050 name: palatocerebral artery namespace: zebrafish_anatomy def: "The PLA branches ventrally from the CrDI. It extends rostrally along the base of mid- and forebrain, then loops medially and links to the corresponding vessel from the other side of the embryo." [ZFIN:ZDB-PUB-010205-5] synonym: "PLA" EXACT [] xref: TAO:0005050 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0005051 name: communicating vessel palatocerebral artery namespace: zebrafish_anatomy def: "Connect the palatocerebral artery with the prosencephalic artery." [ZFIN:ZDB-PUB-010205-5] synonym: "CMV" EXACT [] synonym: "communicating vessels" EXACT [] xref: TAO:0005051 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0005052 name: anterior mesencephalic central artery namespace: zebrafish_anatomy def: "Arteries that irrigate rostral regions of the midbrain. They extend between the basal communicating artery to the anterior cerebral vein." [ZFIN:ZDB-PUB-010205-5] synonym: "AMCtA" EXACT [] synonym: "rostral mesencephalic central artery" EXACT [] xref: TAO:0005052 is_a: ZFA:0005020 ! central artery relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0005053 name: nasal ciliary artery namespace: zebrafish_anatomy def: "Artery that branches off the cranial division of the internal carotid artery. It bifurcates near the eye." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5] synonym: "NCA" EXACT [] xref: TAO:0005053 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000031 ! Pharyngula:Prim-25 [Term] id: ZFA:0005054 name: inner optic circle namespace: zebrafish_anatomy def: "Vessel that circles the inner rim of the optic capsule. The inner optic circle drains ventrally into the optic vein and dorsally into the dorsal ciliary vein." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5] synonym: "IOC" EXACT [] xref: TAO:0005054 is_a: ZFA:0000005 ! artery is_a: ZFA:0007057 ! ocular blood vessel relationship: develops_from ZFA:0005082 ! dorsal branch nasal ciliary artery relationship: develops_from ZFA:0005083 ! ventral branch nasal ciliary artery relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005055 name: median palatocerebral vein namespace: zebrafish_anatomy def: "Drains the PLA loop proceeds straight caudally along the cranial midline just above the pharynx, just below the diencephalon. Forms a 'T' with the palatocerebral veins." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5] synonym: "MPLV" EXACT [] xref: TAO:0005055 is_a: ZFA:0000082 ! vein relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0005297 ! cranial blood vessel relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0005056 name: palatocerebral vein namespace: zebrafish_anatomy def: "Vein that drains the median palatocerebral vein into the optic vein." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5] synonym: "PLV" EXACT [] xref: TAO:0005056 is_a: ZFA:0000082 ! vein relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0005297 ! cranial blood vessel relationship: start ZFS:0000034 ! Hatching:Pec-fin [Term] id: ZFA:0005057 name: epicardium namespace: zebrafish_anatomy def: "External layer of the heart." [GOC:cvs, ORCiD:0000-0002-2244-7917] comment: No evidence of epicardium layer in cardiac atrium in Hu et al 2001. xref: TAO:0005057 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0005808 ! proepicardial cluster relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000114 ! heart relationship: start ZFS:0000035 ! Larval:Protruding-mouth [Term] id: ZFA:0005058 name: ventricular epicardium namespace: zebrafish_anatomy def: "The external layer of the ventricle bounding the ventricular myocardium. It is formed by a single layer of mesothelial cells supported by a basal lamina, and imbricated with collagen, fibroblasts, and vascular structures in the subepicardial space." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010912-30] xref: TAO:0005058 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000009 ! cardiac ventricle relationship: part_of ZFA:0005057 ! epicardium relationship: start ZFS:0000035 ! Larval:Protruding-mouth [Term] id: ZFA:0005059 name: trabecular layer namespace: zebrafish_anatomy def: "The layer of the myocardium composed of projections of contractile myocytes. The trabecular layer is bounded internally by the endocardium. Unlike the trabeculations of higher vertebrates, both atrial and ventricular trabeculae of the zebrafish have more strut-like character, and are more uniform without apparent regional differences." [ZFIN:ZDB-PUB-010912-30] comment: Cardiac conduction may occur in the trabecular layer via trabecular fibers, PMID: 12626327. synonym: "trabecula" RELATED [] xref: TAO:0005059 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001319 ! myocardium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005060 name: trabecular layer of ventricle namespace: zebrafish_anatomy xref: TAO:0005060 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005059 ! trabecular layer relationship: part_of ZFA:0005061 ! ventricular myocardium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005061 name: ventricular myocardium namespace: zebrafish_anatomy def: "Muscular layer of the cardiac ventricle composed of a compact myocardial layer surrounding the trabecular layer." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010912-30] xref: TAO:0005061 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000009 ! cardiac ventricle relationship: part_of ZFA:0001319 ! myocardium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005062 name: compact layer of ventricle namespace: zebrafish_anatomy def: "The outer layer the ventricular myocardium, muscle fibers are arranged in a compact form and involved the entire ventricle." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005062 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005061 ! ventricular myocardium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005063 name: cardiac conduction system namespace: zebrafish_anatomy def: "Anatomical system located in the heart that initiates and propagates heart contraction. The cardiac pacemaker." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "cardiac pacemaker" EXACT [] synonym: "central conduction system" EXACT [] xref: TAO:0005063 is_a: ZFA:0001439 ! anatomical system relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000114 ! heart relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005064 name: atrioventricular valve namespace: zebrafish_anatomy def: "The atrioventricular valve has four distinct leaflets oriented anterior, posterior, left, and right of the atrioventricular orifice." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010912-30] xref: TAO:0005064 is_a: ZFA:0005065 ! heart valve relationship: develops_from ZFA:0001317 ! endocardial cushion relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000009 ! cardiac ventricle relationship: part_of ZFA:0000471 ! atrium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005065 name: heart valve namespace: zebrafish_anatomy def: "Multi-tissue structure composed of leaflets that separate parts of the heart, preventing blood backflow." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] synonym: "heart valves" EXACT PLURAL [] xref: TAO:0005065 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000114 ! heart relationship: start ZFS:0000035 ! Larval:Protruding-mouth [Term] id: ZFA:0005066 name: bulbus arteriosus outer layer namespace: zebrafish_anatomy def: "The portion of tissue that is the outer layer of the bulbus arteriosus. It is composed of scattered layers of interrupted elastic lamina." [ZFIN:ZDB-PUB-010912-30] synonym: "bulbus arteriosus externa" EXACT [] xref: TAO:0005066 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000173 ! bulbus arteriosus relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005067 name: bulbus arteriosus middle layer namespace: zebrafish_anatomy def: "Composed of 7-10 layers of helically arranged smooth muscle cells surrounded by a fine network of collagen, reticular, and elastic fibrils." [ZFIN:ZDB-PUB-010912-30] synonym: "bulbus arteriosus media" EXACT [] xref: TAO:0005067 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000173 ! bulbus arteriosus relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005068 name: bulbus arteriosus inner layer namespace: zebrafish_anatomy def: "Composed of subendothelium with longitudinally oriented collagen, reticular fibrils, elastic fibers, and smooth muscle cells bound by a thin endothelial layer." [ZFIN:ZDB-PUB-010912-30] synonym: "bulbus arteriosus intima" EXACT [] xref: TAO:0005068 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000173 ! bulbus arteriosus relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005069 name: sinoatrial node namespace: zebrafish_anatomy def: "Portion of tissue containing 3 and 30 cells in dorsal right quadrant of atrium that initiate heart beat." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-101115-23] xref: TAO:0005069 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0005601 ! sinoatrial ring relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000471 ! atrium relationship: part_of ZFA:0005063 ! cardiac conduction system relationship: start ZFS:0000035 ! Larval:Protruding-mouth [Term] id: ZFA:0005070 name: atrioventricular node namespace: zebrafish_anatomy def: "The portion of tissue in the atrioventricular canal that slows impulse propagation between the atrium and cardiac ventricle." [ZFIN:ZDB-PUB-060227-6] synonym: "AV node" EXACT [] synonym: "downstream pacemaker" RELATED [] xref: TAO:0005070 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0005073 ! atrioventricular ring relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001315 ! atrioventricular canal relationship: part_of ZFA:0005063 ! cardiac conduction system relationship: start ZFS:0000035 ! Larval:Protruding-mouth [Term] id: ZFA:0005071 name: distal conduction system namespace: zebrafish_anatomy comment: Appears to be mammalian due to exact synonym His-Perkinje system, which doesn't have an exact analog in fish (or frogs). PMID:22984480 PLoS One. 2012;7(9):e44231. synonym: "His-Purkinje system" EXACT [] synonym: "His-Purkinji network" EXACT [] synonym: "HPS" EXACT [] xref: TAO:0005071 is_obsolete: true consider: ZFA:0005059 [Term] id: ZFA:0005072 name: endocardial ring namespace: zebrafish_anatomy def: "A portion of endocardial tissue that is part of the atrioventricular ring." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005072 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000035 ! Larval:Protruding-mouth relationship: part_of ZFA:0001320 ! endocardium relationship: part_of ZFA:0005073 ! atrioventricular ring relationship: start ZFS:0000032 ! Pharyngula:High-pec [Term] id: ZFA:0005073 name: atrioventricular ring namespace: zebrafish_anatomy def: "A ring of conduction tissue that forms in the atrioventricular canal." [ZFIN:ZDB-PUB-060227-6] synonym: "AV ring" EXACT [] xref: TAO:0005073 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000035 ! Larval:Protruding-mouth relationship: part_of ZFA:0001315 ! atrioventricular canal relationship: part_of ZFA:0005063 ! cardiac conduction system relationship: start ZFS:0000032 ! Pharyngula:High-pec [Term] id: ZFA:0005074 name: central cardiac conduction system namespace: zebrafish_anatomy def: "Cardiac conduction system, characterized by slow impulse propagation and prolonged refractory periods." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-060227-6] xref: TAO:0005074 is_a: ZFA:0005063 ! cardiac conduction system relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005075 name: peripheral cardiac conduction system namespace: zebrafish_anatomy def: "Portion of the cardiac conduction system, with rapid impulse propagation. In the zebrafish fast conduction takes place in the trabecular layer." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-120927-27, ZFIN:ZDB-PUB-120928-25] synonym: "distal conduction system " RELATED [] synonym: "ventricular fast conduction system" EXACT [ZFIN:ZDB-PUB-120927-27] xref: TAO:0005075 is_a: ZFA:0005063 ! cardiac conduction system relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000009 ! cardiac ventricle relationship: start ZFS:0000035 ! Larval:Protruding-mouth [Term] id: ZFA:0005076 name: primordial vasculature namespace: zebrafish_anatomy def: "Is a portion of tissue that will develop into vasculature." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005076 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0000010 ! cardiovascular system relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0005077 name: vascular cord namespace: zebrafish_anatomy def: "The primordial vasculature that will develop into blood vessels by the process of tubulogenesis. The vascular cord is composed of angioblast or vascular endothelial cells in a solid linear mass called a cord. The cord then undergoes tubulogenesis to form the lumen of the vessels." [ZFIN:ZDB-PUB-040416-1] xref: TAO:0005077 is_a: ZFA:0005076 ! primordial vasculature relationship: end ZFS:0000028 ! Segmentation:26+ somites relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0005078 name: middle mesencephalic central artery namespace: zebrafish_anatomy def: "Projects rostrally and dorsally from the AMCtA to irrigate the midportion of the midbrain." [ZFIN:ZDB-PUB-010205-5] synonym: "MMCtA" EXACT [] xref: TAO:0005078 is_a: ZFA:0005020 ! central artery relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0005079 name: posterior mesencephalic central artery namespace: zebrafish_anatomy def: "Project dorsally from BCA to irrigate the caudal part of midbrain." [ZFIN:ZDB-PUB-010205-5] synonym: "caudal mesencephalic central artery" EXACT [] synonym: "PMCtA" EXACT [] xref: TAO:0005079 is_a: ZFA:0005020 ! central artery relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0005080 name: anterior mesenteric artery namespace: zebrafish_anatomy def: "An artery deep in the trunk that connects the dorsal aorta to the supraintestinal artery." [ZFIN:ZDB-PUB-010205-5] synonym: "AMA" EXACT [] synonym: "rostral mesenteric artery" EXACT [] xref: TAO:0005080 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000034 ! Hatching:Pec-fin [Term] id: ZFA:0005081 name: internal carotid artery namespace: zebrafish_anatomy def: "Artery that originates as rostral extensions of the dorsal aorta and travels through the hypophyseal fossa into the cranium. The internal carotid artery splits near the hypothalamus and optic nerve to form caudal and cranial divisions." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-140605-9] comment: Homologous to the human ICA ZDB-PUB-140605-9. synonym: "cranial carotid artery" EXACT [] synonym: "ICA" EXACT [] xref: TAO:0005081 is_a: ZFA:0000005 ! artery relationship: develops_from ZFA:0001053 ! primitive internal carotid artery relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000097 ! carotid artery relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005082 name: dorsal branch nasal ciliary artery namespace: zebrafish_anatomy def: "Branch of the nasal ciliary artery (NCA) that splits off of the NCA near the lens and forms the dorsal ciliary vein." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5] synonym: "dorsal branch nasal ciliary arteries" EXACT PLURAL [] xref: TAO:0005082 is_a: ZFA:0000005 ! artery is_a: ZFA:0007057 ! ocular blood vessel relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0005053 ! nasal ciliary artery relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0005083 name: ventral branch nasal ciliary artery namespace: zebrafish_anatomy xref: TAO:0005083 is_a: ZFA:0000005 ! artery is_a: ZFA:0007057 ! ocular blood vessel relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0005053 ! nasal ciliary artery relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0005084 name: metencephalic artery namespace: zebrafish_anatomy def: "These arteries branch dorsally from both sides of the posterior communicating artery looping up to join with the opposite MtA as well as with both middle cerebral veins at the dorsal midline of the head." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5] synonym: "metencephalic arteries" EXACT PLURAL [] xref: TAO:0005084 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000031 ! Pharyngula:Prim-25 [Term] id: ZFA:0005085 name: nasal artery namespace: zebrafish_anatomy def: "The nasal arteries start at the internal carotid artery and travel rostrally, passing along the right and left walls of the nasal sac at the most rostral end of the head. From the nasal sac, the NA flows into the nasal veins." [ZFIN:ZDB-PUB-010205-5] synonym: "NA" EXACT [] xref: TAO:0005085 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000036 ! Larval:Day 4 [Term] id: ZFA:0005086 name: pectoral artery namespace: zebrafish_anatomy def: "The pectoral (subclavian) arteries originate from the dorsal aorta and takes the blood outward into the fin from the paired portion of the dorsal aorta posterior to the last aortic arch Kimmel et al. 1993." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "PA" EXACT [] synonym: "subclavian artery" EXACT [] xref: TAO:0005086 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005301 ! pectoral fin blood vessel relationship: start ZFS:0000034 ! Hatching:Pec-fin [Term] id: ZFA:0005087 name: pectoral vein namespace: zebrafish_anatomy def: "Vein from the pectoral fin that drains into the ACV just cranial to the ACV-CCV junction." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5] synonym: "PV" EXACT [] xref: TAO:0005087 is_a: ZFA:0000082 ! vein relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005301 ! pectoral fin blood vessel relationship: start ZFS:0000034 ! Hatching:Pec-fin [Term] id: ZFA:0005088 name: posterior mesenteric artery namespace: zebrafish_anatomy def: "Branch ventrally from the dorsal aorta and anastomose longitudinally along the dorsal wall of the hindgut, forming the caudal part of the supraintestinal artery." [ZFIN:ZDB-PUB-010205-5] synonym: "caudal mesenteric artery" EXACT [] synonym: "PMA" EXACT [] xref: TAO:0005088 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000034 ! Hatching:Pec-fin [Term] id: ZFA:0005089 name: swim bladder artery namespace: zebrafish_anatomy def: "An elaborate set of vessels that branch off caudally from the anterior mesenteric artery just after the dorsal aorta. The SBA vascular loops are located on the ventral side of the swim bladder." [ZFIN:ZDB-PUB-010205-5] synonym: "SBA" EXACT [] xref: TAO:0005089 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000034 ! Hatching:Pec-fin [Term] id: ZFA:0005090 name: hepatic portal vein namespace: zebrafish_anatomy def: "Vein that collects blood from the small intestine, pancreas and spleen and routes it through the liver." [GOC:cvs, http://www.vivo.colostate.edu/hbooks/pathphys/digestion/liver/anatomy.html, ORCiD:0000-0002-2244-7917] synonym: "HPV" EXACT [] synonym: "primary hepatic portal vein" RELATED [] xref: TAO:0005090 is_a: ZFA:0000082 ! vein relationship: develops_from ZFA:0005035 ! subintestinal vein relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000123 ! liver relationship: start ZFS:0000035 ! Larval:Protruding-mouth [Term] id: ZFA:0005091 name: hepatic sinusoid namespace: zebrafish_anatomy def: "Wide thin-walled blood vessels in the liver. The terminal branches of the hepatic portal vein and hepatic artery empty into the sinusoids where the blood mixes. In mammals they have neither venous or arterial markers. Sinusoids are scattered throughout the parenchyma and appear small and round." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-090422-17] synonym: "hepatic sinusoids" EXACT PLURAL [] xref: TAO:0005091 is_a: ZFA:0005314 ! blood vessel relationship: develops_from ZFA:0005035 ! subintestinal vein relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000123 ! liver relationship: part_of ZFA:0005024 ! trunk vasculature relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005092 name: mesencephalic vein namespace: zebrafish_anatomy def: "Paired veins that sprout from the dorsal midline junction and dive ventrally. The mesencephalic veins are fed by the mesencephalic arteries, after 2.5 dpf, and drain into the dorsal longitudinal vessel after 5dpf." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5] synonym: "MsV" EXACT [] xref: TAO:0005092 is_a: ZFA:0000082 ! vein relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0005093 name: nasal vein namespace: zebrafish_anatomy def: "Vein that is fed by the nasal artery. It rises dorsally around the front of the head, draining into the ACeV and eventually into the PMBC on either side." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5] synonym: "NV" EXACT [] xref: TAO:0005093 is_a: ZFA:0000082 ! vein relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005297 ! cranial blood vessel relationship: start ZFS:0000036 ! Larval:Day 4 [Term] id: ZFA:0005094 name: optic choroid vascular plexus namespace: zebrafish_anatomy alt_id: ZFA:0005228 def: "Is an ocular vasculature that develops adjacent to the pigment epithelium of the eye. The optic choroid vascular plexus develops from the primitive mesencephalic artery. Initially blood enters from the mesencephalic central artery, and the dorsal ciliary vein. The plexus drains via the ophthalmic vein. The plexus supplies blood to the retina." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5] synonym: "choroid vasculature" EXACT [] synonym: "CVP" EXACT [] xref: TAO:0005094 is_a: ZFA:0007057 ! ocular blood vessel relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005229 ! optic choroid relationship: start ZFS:0000036 ! Larval:Day 4 [Term] id: ZFA:0005095 name: fin vasculature namespace: zebrafish_anatomy def: "Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005095 is_a: ZFA:0005249 ! vasculature relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000108 ! fin relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005096 name: pectoral fin vasculature namespace: zebrafish_anatomy def: "Vasculature of the pectoral fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005096 is_a: ZFA:0005095 ! fin vasculature relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001161 ! pectoral fin relationship: start ZFS:0000034 ! Hatching:Pec-fin [Term] id: ZFA:0005097 name: caudal fin vasculature namespace: zebrafish_anatomy def: "Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the caudal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005097 is_a: ZFA:0005095 ! fin vasculature relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001058 ! caudal fin relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005098 name: central ray artery namespace: zebrafish_anatomy def: "Artery that is positioned in the intraray mesenchyme between the hemirays of the lepidotrichia." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-031119-3] synonym: "central ray arteries" EXACT PLURAL [] xref: TAO:0005098 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005299 ! fin blood vessel relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005099 name: ray vein namespace: zebrafish_anatomy def: "Vein that flanks and is just lateral to the fin ray, in the interray mesenchyme." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-031119-3] synonym: "ray veins" EXACT PLURAL [] xref: TAO:0005099 is_a: ZFA:0000082 ! vein relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005299 ! fin blood vessel relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005100 name: intervessel commissure namespace: zebrafish_anatomy def: "Vessels that travel between artery and veins or vein and vein in a single ray." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "intervessel comisures" EXACT PLURAL [] xref: TAO:0005100 is_a: ZFA:0005299 ! fin blood vessel relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005101 name: interray vessel namespace: zebrafish_anatomy def: "Vessels that travel between veins in adjacent rays." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "interray vessels" EXACT PLURAL [] xref: TAO:0005101 is_a: ZFA:0005299 ! fin blood vessel relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005102 name: presumptive median fin fold namespace: zebrafish_anatomy def: "Stripe of tissue fated to become the median fin fold." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005102 is_a: ZFA:0001116 ! presumptive structure relationship: end ZFS:0000028 ! Segmentation:26+ somites relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0005103 name: presumptive ventral fin fold namespace: zebrafish_anatomy def: "Stripe of tissue on the ventral side of the fish, fated to become the ventral region of the median fin fold." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005103 is_a: ZFA:0005102 ! presumptive median fin fold relationship: end ZFS:0000028 ! Segmentation:26+ somites relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0005104 name: presumptive dorsal fin fold namespace: zebrafish_anatomy def: "Stripe of tissue on the dorsal side of the fish, fated to become the dorsal region of the median fin fold." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005104 is_a: ZFA:0005102 ! presumptive median fin fold relationship: end ZFS:0000028 ! Segmentation:26+ somites relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0005105 name: lymph vasculature namespace: zebrafish_anatomy def: "A network of blunt ended vessels lacking direct connection to the blood vascular system. These vessels collect and drain fluids and macromolecules from interstitial spaces throughout the animal. They derive from a subpopulation of endothelial cells and have walls that are much thinner than the blood carrying vessels. The walls are mostly composed of single layer of irregularly shaped endothelial cells. Lymphatic vessels are usually classified as either superficial or deep." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-120529-43, ZFIN:ZDB-PUB-130218-10] synonym: "lymph vessel" RELATED [] synonym: "lymph vessels" EXACT PLURAL [] xref: TAO:0005105 is_a: ZFA:0005249 ! vasculature relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000385 ! lymphatic system relationship: start ZFS:0000032 ! Pharyngula:High-pec [Term] id: ZFA:0005106 name: longitudinal lateral lymphatic vessel namespace: zebrafish_anatomy synonym: "LLL" EXACT [] xref: TAO:0005106 is_a: ZFA:0005844 ! lymph vessel relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005107 name: pectoral lymphatic vessel namespace: zebrafish_anatomy synonym: "PL" EXACT [] xref: TAO:0005107 is_a: ZFA:0005844 ! lymph vessel relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005108 name: facial lymphatic vessel namespace: zebrafish_anatomy comment: Probably a deep lymph vessel. This vessel was shown in ZDB-PUB-060616-13 at 5 weeks post fertilization using Berlin blue dye lymphangiography. synonym: "FL" EXACT [] xref: TAO:0005108 is_a: ZFA:0005844 ! lymph vessel relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005831 ! facial lymphatic network relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005109 name: jugular lymphatic vessel namespace: zebrafish_anatomy def: "Lymph vessel that connects the lateral facial lymph vessel to the thoracic duct near the common cardinal vein." [GOC:cvs, ORCID:0000-0002-2244-7917, ZFIN:ZDB-PUB-120529-43] synonym: "JL" EXACT [] synonym: "JLV" EXACT [] xref: TAO:0005109 is_a: ZFA:0005844 ! lymph vessel relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005831 ! facial lymphatic network relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005110 name: thoracic duct namespace: zebrafish_anatomy def: "The thoracic duct is the first perfused lymphatic, located between the dorsal aorta and posterior cardinal vein." [ZFIN:ZDB-PUB-100719-62] xref: TAO:0005110 is_a: ZFA:0005296 ! axial lymph vessel relationship: develops_from ZFA:0005605 ! lymphangioblast cord relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000035 ! Larval:Protruding-mouth [Term] id: ZFA:0005111 name: medial forebrain bundle namespace: zebrafish_anatomy def: "Tract that originates in the telencephalon lies medial to the lateral forebrain bundle and extends into the diencephalon approaching the posterior tuberal nucleus. In embryos the tract connects cells in the ventral olfactory bulb to those in the septal area." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-071219-12, ZFIN:ZDB-PUB-961014-1280] synonym: "medial forebrain bundles" EXACT PLURAL [] xref: TAO:0005111 is_a: ZFA:0001682 ! white matter relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0005112 name: dorsal lateral line namespace: zebrafish_anatomy def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "dorsal lateral lines" EXACT PLURAL [] xref: TAO:0005112 is_a: ZFA:0001469 ! lateral line relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001471 ! posterior lateral line system relationship: start ZFS:0000034 ! Hatching:Pec-fin [Term] id: ZFA:0005113 name: dorsal lateral line neuromast namespace: zebrafish_anatomy def: "Neuromast that is part of the dorsal lateral line. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576] synonym: "neuromast dorsal" EXACT [] xref: TAO:0005113 is_a: ZFA:0000243 ! neuromast relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005112 ! dorsal lateral line relationship: start ZFS:0000034 ! Hatching:Pec-fin [Term] id: ZFA:0005114 name: middle lateral line system namespace: zebrafish_anatomy def: "The middle lateral line system develops from cranial ectodermal placodes, that give rise to both the neuromasts and the middle lateral line sensory nerves that innervate the neuromasts. The middle lateral line system consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the body that are innervated by several lateral line nerves, which project to the hindbrain. The middle lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] xref: TAO:0005114 is_a: ZFA:0000034 ! lateral line system relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005115 name: primary posterior lateral line primordium namespace: zebrafish_anatomy def: "Primordium that forms the first neuromasts of the posterior lateral line. This primordium travels at 1.5-1.7 somites/hour and deposits neuromast that are polarized along the antero-posterior axis." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] synonym: "primary posterior lateral line primordia" EXACT PLURAL [] synonym: "primI" EXACT [] xref: TAO:0005115 is_a: ZFA:0001157 ! posterior lateral line primordium relationship: develops_from ZFA:0001156 ! posterior lateral line placode relationship: end ZFS:0000033 ! Hatching:Long-pec relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0005116 name: secondary posterior lateral line primordium namespace: zebrafish_anatomy def: "Second lateral line primordium. These primordia move at 0.2 somites/hour and deposit neuromasts that are polarized in a dorso-ventral direction." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] synonym: "secondary posterior lateral line primordia" EXACT PLURAL [] xref: TAO:0005116 is_a: ZFA:0001157 ! posterior lateral line primordium relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0005117 name: anterior lateral line primordium namespace: zebrafish_anatomy def: "A migrating group of cells originating from an anterior lateral line placode. The primordium deposits neuromasts and interneuromasts between them during its migration." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "anterior lateral line primordia" EXACT PLURAL [] xref: TAO:0005117 is_a: ZFA:0000228 ! lateral line primordium relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0001468 ! anterior lateral line system relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0005118 name: middle lateral line primordium namespace: zebrafish_anatomy def: "A migrating group of cells originating from the middle lateral line placode. The primordium deposits neuromasts with interneuromasts between them." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "middle lateral line primordia" EXACT PLURAL [] xref: TAO:0005118 is_a: ZFA:0000228 ! lateral line primordium relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0005114 ! middle lateral line system relationship: start ZFS:0000031 ! Pharyngula:Prim-25 [Term] id: ZFA:0005119 name: barbel primordium namespace: zebrafish_anatomy def: "A surface structure that will eventually grow to form a barbel. The primordium is rich in taste buds. The final location for taste buds present in the primordium is the distal tip of the mature barbel." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] synonym: "barbel primordia" EXACT PLURAL [] xref: TAO:0005119 is_a: ZFA:0000292 ! surface structure relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: start ZFS:0000042 ! Juvenile:Days 30-44 [Term] id: ZFA:0005120 name: peritoneum namespace: zebrafish_anatomy def: "The serous membrane that lines the peritoneal cavity. The peritoneum secretes serous fluid which allows free movement of the peritoneum and the intraperitoneal organs." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] xref: TAO:0005120 is_a: ZFA:0005425 ! serous membrane relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005121 name: middle lateral line placode namespace: zebrafish_anatomy def: "Dorsolateral placode that gives rise to the middle lateral line." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "middle lateral line placodes" EXACT PLURAL [] xref: TAO:0005121 is_a: ZFA:0001310 ! dorsolateral placode relationship: end ZFS:0000033 ! Hatching:Long-pec relationship: part_of ZFA:0005114 ! middle lateral line system relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005122 name: dorsal axial hypoblast namespace: zebrafish_anatomy def: "Dorsal region of the axial hypoblast." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] xref: TAO:0005122 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000022 ! Gastrula:Bud relationship: part_of ZFA:0001378 ! axial hypoblast relationship: start ZFS:0000020 ! Gastrula:75%-epiboly [Term] id: ZFA:0005123 name: gut epithelium namespace: zebrafish_anatomy def: "Epithelium lining the lumen of the gut." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005123 is_a: ZFA:0001486 ! epithelium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000112 ! gut relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005124 name: intestinal epithelium namespace: zebrafish_anatomy def: "Simple columnar epithelium that lines the intestine, sometimes pseudostratified, with absorptive brush-border cells and mucous goblet cells clearly visible." [ZFIN:ZDB-PUB-050209-3] synonym: "intestine epithelium" EXACT [] synonym: "villous epithelium" EXACT [ZFIN:ZDB-PUB-090217-11] xref: TAO:0005124 is_a: ZFA:0001496 ! simple columnar epithelium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005123 ! gut epithelium relationship: part_of ZFA:0005660 ! intestinal mucosa relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005125 name: intestinal villus namespace: zebrafish_anatomy def: "The entire digestive tract is lined by well developed villi, which are longest in the intestinal bulb and decrease progressively in size towards the caudal end of the intestine." [ZFIN:ZDB-PUB-050209-3] synonym: "intestinal villi" EXACT PLURAL [] xref: TAO:0005125 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005124 ! intestinal epithelium relationship: start ZFS:0000037 ! Larval:Day 5 [Term] id: ZFA:0005126 name: intestinal bulb epithelium namespace: zebrafish_anatomy def: "Intestinal epithelium which lines the lumen of the intestinal bulb." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005126 is_a: ZFA:0005124 ! intestinal epithelium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001076 ! intestinal bulb relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005127 name: mid intestine epithelium namespace: zebrafish_anatomy def: "Intestinal epithelium which lines the lumen of the mid intestine." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005127 is_a: ZFA:0005124 ! intestinal epithelium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001323 ! mid intestine relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005128 name: posterior intestine epithelium namespace: zebrafish_anatomy def: "Intestinal epithelium which lines the lumen of the posterior intestine." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005128 is_a: ZFA:0005124 ! intestinal epithelium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000706 ! posterior intestine relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005129 name: mesentery namespace: zebrafish_anatomy def: "A double layer composed of peritoneum that attaches the visceral organs to the body wall." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005129 is_a: ZFA:0001486 ! epithelium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005120 ! peritoneum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005130 name: dorsal mesentery namespace: zebrafish_anatomy def: "The mesentery that originates from the dorsal side of the peritoneal cavity." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005130 is_a: ZFA:0005129 ! mesentery relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005131 name: parietal peritoneum namespace: zebrafish_anatomy def: "The peritoneum that lines the walls of the peritoneal cavity." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005131 is_a: ZFA:0005425 ! serous membrane relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005120 ! peritoneum relationship: part_of ZFA:0007116 ! pleuroperitoneal region relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005132 name: visceral peritoneum namespace: zebrafish_anatomy def: "The part of peritoneum that is a serous membrane covers the external surfaces of most abdominal organs." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "tunica serosa" RELATED [http:/www.vivo.colostate.edu/hbooks/pathphys/digestion/basics/gi_microanatomy.html] xref: TAO:0005132 is_a: ZFA:0005425 ! serous membrane relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005120 ! peritoneum relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005133 name: ventral mesentery namespace: zebrafish_anatomy def: "The mesentery that originates from the ventral side of the peritoneal cavity." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005133 is_a: ZFA:0005129 ! mesentery relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005134 name: dental epithelium namespace: zebrafish_anatomy def: "Epithelium that is part of a developing tooth or dental organ." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "dental epithelia" EXACT PLURAL [] xref: TAO:0005134 is_a: ZFA:0001486 ! epithelium relationship: develops_from ZFA:0001174 ! pharyngeal epithelium relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005135 name: primary dental epithelium namespace: zebrafish_anatomy def: "Epithelium that surrounds a primary tooth. This epithelium is committed to formation of replacement teeth." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "pharyngeal tooth epithelium" EXACT [] synonym: "tooth epithelium" EXACT [] xref: TAO:0005135 is_a: ZFA:0005134 ! dental epithelium relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005136 name: inner dental epithelium namespace: zebrafish_anatomy def: "Inner layer of the dental organ, composed of ameloblasts." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "ide" EXACT [] synonym: "inner enamel epithelium" EXACT [] xref: TAO:0005136 is_a: ZFA:0005134 ! dental epithelium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005138 ! dental organ relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005137 name: outer dental epithelium namespace: zebrafish_anatomy def: "Outer layer of the dental organ." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "ode" EXACT [] xref: TAO:0005137 is_a: ZFA:0005134 ! dental epithelium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005138 ! dental organ relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005138 name: dental organ namespace: zebrafish_anatomy def: "A structure that is involved in tooth formation. A bell shape two layer epithelial structure that descends toward the ceratobranchial 5 bone, enclosing the dental mesenchyme. At later times in tooth development the cells at the apex of the bell may be involved in enameloid formation. This structure remains at the base of the erupted tooth and is the source of replacement teeth." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-001208-4] synonym: "enamel organ" EXACT [] xref: TAO:0005138 is_a: ZFA:0001488 ! multi-tissue structure relationship: develops_from ZFA:0001153 ! tooth placode relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005139 name: dental mesenchyme namespace: zebrafish_anatomy def: "Mesenchyme enclosed by dental organ." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005139 is_a: ZFA:0000113 ! head mesenchyme relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005138 ! dental organ relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005140 name: dental papilla namespace: zebrafish_anatomy def: "Tissue of the developing tooth. It is composed of pre-odontoblast and undifferentiated mesenchyme cells and connects to the basal lamina." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "pharyngeal tooth mesenchyme" EXACT [] synonym: "tooth mesenchyme" EXACT [] xref: TAO:0005140 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0005139 ! dental mesenchyme relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005141 name: tooth pulp namespace: zebrafish_anatomy def: "Material in the center of the dentine of the mature tooth. In secondary teeth the pulp contains blood vessels and odontoblast." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005141 is_a: ZFA:0001488 ! multi-tissue structure relationship: develops_from ZFA:0005140 ! dental papilla relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000694 ! ceratobranchial 5 tooth relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005142 name: enameloid namespace: zebrafish_anatomy def: "A dentine-like hypermineralized substance that covers the zebrafish tooth tip." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "enamel" RELATED [] xref: TAO:0005142 is_a: ZFA:0005623 ! odontoid tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000694 ! ceratobranchial 5 tooth relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005143 name: dentine namespace: zebrafish_anatomy def: "Mineralized collagen containing substance that forms the tooth structure. The dentine of first-generation teeth of zebrafish is entirely atubular." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-001208-4] synonym: "dentin " EXACT [] xref: TAO:0005143 is_a: ZFA:0005623 ! odontoid tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000694 ! ceratobranchial 5 tooth relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005144 name: ampullary nerve namespace: zebrafish_anatomy def: "Nerve that is a branch of cranial nerve VIII and innervates the cristae ampullaris." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "ampullary nerves" EXACT PLURAL [] xref: TAO:0005144 is_a: ZFA:0007009 ! nerve relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000247 ! cranial nerve VIII relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005145 name: muscle namespace: zebrafish_anatomy def: "Portion of tissue composed of contractile fibers." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "muscles" EXACT PLURAL [] xref: TAO:0005145 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000548 ! musculature system relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005146 name: area postrema namespace: zebrafish_anatomy def: "An area of medulla oblongata, outside the blood-brain barrier. The apical terminals of the neurons are, in a strategic location either to monitor the chemical constitution of the plasma or to release neurogenic substances into the general circulation." [ZFIN:ZDB-PUB-970602-2] xref: TAO:0005146 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000545 ! medulla oblongata relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005147 name: regenerating tissue namespace: zebrafish_anatomy def: "A portion of tissue that is regrowing after damage or amputation." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "regenerating tissues" EXACT PLURAL [] xref: TAO:0005147 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005148 name: apical epidermal cap namespace: zebrafish_anatomy def: "Part of the regeneration epithelium closest to the fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "apical epidermal caps" EXACT PLURAL [] xref: TAO:0005148 is_a: ZFA:0005147 ! regenerating tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001389 ! regeneration epithelium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005149 name: distal epidermal cap namespace: zebrafish_anatomy def: "Part of regeneration epithelium at the tip of the fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "distal epidermal caps" EXACT PLURAL [] xref: TAO:0005149 is_a: ZFA:0005147 ! regenerating tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001389 ! regeneration epithelium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005150 name: basal regeneration epithelium namespace: zebrafish_anatomy def: "Layer of the wound epidermis that surrounds the blastema." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "basal wound epidermis" EXACT [] xref: TAO:0005150 is_a: ZFA:0005147 ! regenerating tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001389 ! regeneration epithelium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0005151 name: gold iridophore namespace: zebrafish_anatomy def: "Iridescent iridophore containing gold reflecting platelets." [GOC:cvs, ORCiD:0000-0002-2244-7917] subset: cell_slim xref: TAO:0005151 is_a: ZFA:0009199 ! iridophore relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000032 ! Pharyngula:High-pec created_by: Ceri creation_date: 2009-03-12T12:34:16Z [Term] id: ZFA:0005152 name: silver iridophore namespace: zebrafish_anatomy def: "Iridescent iridophore containing silver reflecting platelets." [GOC:cvs, ORCiD:0000-0002-2244-7917] subset: cell_slim xref: TAO:0005152 is_a: ZFA:0009199 ! iridophore relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000032 ! Pharyngula:High-pec created_by: Ceri creation_date: 2009-03-12T12:48:18Z [Term] id: ZFA:0005153 name: synovial joint namespace: zebrafish_anatomy def: "Is a joint that is located at the point of contact of articulating bones allowing movement. The joint has a capsule containing synovial fluid surrounding the articulating bone surfaces." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "diarthrodial joints" RELATED [] synonym: "diarthroses" EXACT [] xref: TAO:0005153 is_a: ZFA:0001596 ! joint relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-03-12T01:31:49Z [Term] id: ZFA:0005154 name: synovial fluid namespace: zebrafish_anatomy def: "Portion of organism substance that is a clear fluid that occupies the space in synovial joints." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005154 is_a: ZFA:0001487 ! portion of organism substance relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005153 ! synovial joint relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-03-12T01:42:07Z [Term] id: ZFA:0005155 name: cartilaginous joint namespace: zebrafish_anatomy def: "Is a joint where the ends of two bones are connected by cartilage." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "synchondrosis" EXACT [] xref: TAO:0005155 is_a: ZFA:0001596 ! joint relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-03-12T01:52:52Z [Term] id: ZFA:0005156 name: fibrous joint namespace: zebrafish_anatomy def: "A joint where fibrous tissue such as ligament connects two calcified tissues." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "syndesmoses" EXACT PLURAL [] synonym: "syndesmosis" EXACT [] xref: TAO:0005156 is_a: ZFA:0001596 ! joint relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-03-12T01:54:12Z [Term] id: ZFA:0005157 name: tela chorioidea tectal ventricle namespace: zebrafish_anatomy def: "Tela chorioidea that lines the tectal ventricle." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "tela choroidea tectal ventricle" EXACT [] xref: TAO:0005157 is_a: ZFA:0000447 ! tela chorioidea relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000159 ! tectal ventricle relationship: start ZFS:0000029 ! Pharyngula:Prim-5 created_by: Ceri creation_date: 2009-04-02T01:30:05Z [Term] id: ZFA:0005158 name: tela chorioidea fourth ventricle namespace: zebrafish_anatomy def: "Tela chorioidea that lines the fourth ventricle." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "tela choroidea fourth ventricle" EXACT [] xref: TAO:0005158 is_a: ZFA:0000447 ! tela chorioidea relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000110 ! fourth ventricle relationship: start ZFS:0000029 ! Pharyngula:Prim-5 created_by: Ceri creation_date: 2009-04-02T01:40:34Z [Term] id: ZFA:0005159 name: tela chorioidea third ventricle namespace: zebrafish_anatomy def: "Tela chorioidea that lines the third ventricle." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "tela choroidea third ventricle" EXACT [] xref: TAO:0005159 is_a: ZFA:0000447 ! tela chorioidea relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000161 ! third ventricle relationship: start ZFS:0000029 ! Pharyngula:Prim-5 created_by: Ceri creation_date: 2009-04-02T02:04:56Z [Term] id: ZFA:0005160 name: tela chorioidea telencephalic ventricle namespace: zebrafish_anatomy def: "Tela chorioidea that lines the telencephalic ventricle." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "tela choroidea telencephalic ventricle" EXACT [] xref: TAO:0005160 is_a: ZFA:0000447 ! tela chorioidea relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000696 ! telencephalic ventricle relationship: start ZFS:0000029 ! Pharyngula:Prim-5 created_by: Ceri creation_date: 2009-04-02T02:20:33Z [Term] id: ZFA:0005161 name: hepatic artery namespace: zebrafish_anatomy def: "Artery that supplies blood to the liver." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005161 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000123 ! liver relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-04-20T03:43:46Z [Term] id: ZFA:0005162 name: digestive system duct namespace: zebrafish_anatomy def: "Ducts that transport enzymes between organs in the digestive system." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005162 is_a: ZFA:0005171 ! duct relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000339 ! digestive system relationship: start ZFS:0000025 ! Segmentation:10-13 somites created_by: Ceri creation_date: 2009-04-20T04:51:36Z [Term] id: ZFA:0005163 name: bile canaliculus namespace: zebrafish_anatomy def: "Intercellular space surrounded by the basal surface of the hepatocytes that collect bile." [GOC:cvs, ORCiD:0000-0002-2244-7917] comment: Should be located in rather then part_of when we get the appropriate relation. xref: TAO:0005163 is_a: ZFA:0001643 ! anatomical space relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000123 ! liver relationship: start ZFS:0000035 ! Larval:Protruding-mouth created_by: Ceri creation_date: 2009-04-20T05:33:42Z [Term] id: ZFA:0005164 name: bile ductule namespace: zebrafish_anatomy def: "Digestive system duct that collects bile from the canaliculus and transports bile through the liver." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005164 is_a: ZFA:0005162 ! digestive system duct relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000123 ! liver relationship: start ZFS:0000035 ! Larval:Protruding-mouth created_by: Ceri creation_date: 2009-04-20T05:39:12Z [Term] id: ZFA:0005165 name: common bile duct namespace: zebrafish_anatomy def: "Digestive system duct that collects bile from the hepatic bile duct and the cystic duct." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005165 is_a: ZFA:0005162 ! digestive system duct relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001100 ! hepatic duct relationship: start ZFS:0000035 ! Larval:Protruding-mouth created_by: Ceri creation_date: 2009-04-20T05:43:23Z [Term] id: ZFA:0005166 name: cystic duct namespace: zebrafish_anatomy def: "Duct that connects the gall bladder and the common bile duct." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005166 is_a: ZFA:0005162 ! digestive system duct relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000036 ! liver and biliary system relationship: start ZFS:0000035 ! Larval:Protruding-mouth created_by: Ceri creation_date: 2009-04-20T05:56:39Z [Term] id: ZFA:0005167 name: hepatopancreatic ampulla namespace: zebrafish_anatomy def: "Ampulla formed by the union of the pancreatic duct and the common bile duct where they enter the intestine." [ZFIN:ZDB-PUB-070212-11, ZFIN:ZDB-PUB-080414-12] synonym: "ampulla of Vater" EXACT [] synonym: "papilla duodeni major" RELATED [] synonym: "papilla Vateri" EXACT [] xref: TAO:0005167 is_a: ZFA:0005162 ! digestive system duct relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000339 ! digestive system relationship: start ZFS:0000035 ! Larval:Protruding-mouth created_by: Ceri creation_date: 2009-04-20T05:59:27Z [Term] id: ZFA:0005168 name: central vein namespace: zebrafish_anatomy def: "Vein that is central to a lobule in the liver." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005168 is_a: ZFA:0000082 ! vein relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000123 ! liver relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-04-21T02:46:13Z [Term] id: ZFA:0005169 name: intrahepatic bile duct namespace: zebrafish_anatomy def: "Duct that collects bile from the bile ductules and connects to the extrahepatic bile duct." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005169 is_a: ZFA:0005162 ! digestive system duct relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000123 ! liver relationship: start ZFS:0000035 ! Larval:Protruding-mouth created_by: Ceri creation_date: 2009-04-27T04:19:40Z [Term] id: ZFA:0005170 name: extrahepatic duct namespace: zebrafish_anatomy def: "Bile duct that collects from the intrahepatic ducts and feeds into the common bile duct." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005170 is_a: ZFA:0005162 ! digestive system duct relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001100 ! hepatic duct relationship: start ZFS:0000035 ! Larval:Protruding-mouth created_by: Ceri creation_date: 2009-04-27T04:26:36Z [Term] id: ZFA:0005171 name: duct namespace: zebrafish_anatomy def: "A tube shaped multi-tissue structure lined with epithelial cells that collects secretions and routes them to their destination." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005171 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-04-27T04:45:59Z [Term] id: ZFA:0005172 name: left liver lobe namespace: zebrafish_anatomy def: "Portion of the liver which develops on the fish's left side." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "1st lobe" EXACT [] synonym: "first lobe" EXACT [] xref: TAO:0005172 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000123 ! liver relationship: start ZFS:0000033 ! Hatching:Long-pec created_by: Ceri creation_date: 2009-04-27T05:51:33Z [Term] id: ZFA:0005173 name: right liver lobe namespace: zebrafish_anatomy def: "Portion of the liver which develops on the fish's right side adjacent to the gall bladder." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "2nd lobe" EXACT [] synonym: "gall bladder lobe" EXACT [] synonym: "second lobe" EXACT [] xref: TAO:0005173 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000123 ! liver relationship: start ZFS:0000035 ! Larval:Protruding-mouth created_by: Ceri creation_date: 2009-04-27T05:59:16Z [Term] id: ZFA:0005174 name: ventral liver lobe namespace: zebrafish_anatomy def: "Portion of the liver which develops on the fish's ventral side." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "3rd lobe" EXACT [] synonym: "third lobe" EXACT [] xref: TAO:0005174 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000123 ! liver relationship: start ZFS:0000040 ! Larval:Days 14-20 created_by: Ceri creation_date: 2009-04-27T06:04:51Z [Term] id: ZFA:0005175 name: CoPA namespace: zebrafish_anatomy def: "An interneuron in the spinal cord. CoPA are bipolar with \"T\" shaped dorsal dendrites, have contralateral longitudinal axons that crosses the cord dorsal to the Mauthner neuron and ascends in the dorsal cord." [ZFIN:ZDB-PUB-010807-17, ZFIN:ZDB-PUB-961014-274, ZFIN:ZDB-PUB-961014-649] comment: This term is a leaf node in the zebrafish AO and is not in the CL. subset: cell_slim synonym: "primary commissural interneuron" EXACT [] xref: TAO:0005175 is_a: ZFA:0000778 ! spinal cord interneuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000026 ! Segmentation:14-19 somites created_by: Ceri creation_date: 2009-06-18T01:41:54Z [Term] id: ZFA:0005176 name: CoSA namespace: zebrafish_anatomy def: "An interneuron of the spinal cord. CoSA, have contralateral longitudinal axons that crosses the cord dorsal to the Mauthner neuron and ascends in the dorsal cord." [ZFIN:ZDB-PUB-010807-17, ZFIN:ZDB-PUB-961014-649] comment: This term is a leaf node in the zebrafish AO and is not in the CL. subset: cell_slim synonym: "secondary commissural interneuron" EXACT [] xref: TAO:0005176 is_a: ZFA:0000778 ! spinal cord interneuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000026 ! Segmentation:14-19 somites created_by: Ceri creation_date: 2009-06-18T02:07:49Z [Term] id: ZFA:0005177 name: VeLD namespace: zebrafish_anatomy def: "An interneuron of the spinal cord. VeLD neurons have an ipsilateral longitudinal axon." [ZFIN:ZDB-PUB-961014-649] comment: This term is a leaf node in the zebrafish AO and is not in the CL. subset: cell_slim synonym: "V2b interneuron" RELATED [] synonym: "ventral longitudinal interneuron" EXACT [] xref: TAO:0005177 is_a: ZFA:0000778 ! spinal cord interneuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000026 ! Segmentation:14-19 somites created_by: Ceri creation_date: 2009-06-18T02:14:18Z [Term] id: ZFA:0005178 name: DoLA namespace: zebrafish_anatomy def: "An interneuron of the spinal cord." [ZFIN:ZDB-PUB-961014-649] comment: This term is a leaf node in the zebrafish AO and is not in the CL. subset: cell_slim synonym: "dorsal longitudinal interneuron" EXACT [] xref: TAO:0005178 is_a: ZFA:0000778 ! spinal cord interneuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000026 ! Segmentation:14-19 somites created_by: Ceri creation_date: 2009-06-18T02:21:58Z [Term] id: ZFA:0005179 name: MiP motor neuron namespace: zebrafish_anatomy def: "A primary motor neuron that is part of the spinal cord. The axon turns caudally and dorsally, coursing between the surface of the spinal cord and the medial surface of the axial muscles to the dorsal median septum. The MiP axon then extends dorsally to the surface of the muscle, where it turns to arborize ventrally over the lateral surface of the axial muscle." [ZFIN:ZDB-PUB-961014-1247, ZFIN:ZDB-PUB-961014-272, ZFIN:ZDB-PUB-961014-814] comment: This term is a leaf node in the zebrafish AO and is not in the CL. subset: cell_slim synonym: "middle primary motoneuron" EXACT [] xref: TAO:0005179 is_a: ZFA:0009244 ! primary motor neuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000026 ! Segmentation:14-19 somites created_by: Ceri creation_date: 2009-06-18T04:02:28Z [Term] id: ZFA:0005180 name: RoP motor neuron namespace: zebrafish_anatomy def: "A primary motoneuron that is part of the spinal cord. The axon of the CaP motoneuron on emerging from the ventral root. At the horizontal septum, however, the RoP axon turns laterally to extend within the horizontal septum to the lateral surface of the muscle." [ZFIN:ZDB-PUB-961014-1247, ZFIN:ZDB-PUB-961014-272, ZFIN:ZDB-PUB-961014-814] comment: This term is a leaf node in the zebrafish AO and is not in the CL. subset: cell_slim synonym: "rostral primary motoneuron" EXACT [] xref: TAO:0005180 is_a: ZFA:0009244 ! primary motor neuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000026 ! Segmentation:14-19 somites created_by: Ceri creation_date: 2009-06-18T04:05:40Z [Term] id: ZFA:0005181 name: VaP motor neuron namespace: zebrafish_anatomy def: "A primary motor neuron of the spinal cord. This cell is present in slightly less than half of the trunk hemisegments. Additionally, this cell has at least 2 different fates: it may become a primary motoneuron and arborize in an exclusive muscle territory, or it may die during embryonic development." [ZFIN:ZDB-PUB-961014-265, ZFIN:ZDB-PUB-961014-276] comment: This term is a leaf node in the zebrafish AO and is not in the CL. subset: cell_slim synonym: "variable primary motoneuron" EXACT [] xref: TAO:0005181 is_a: ZFA:0009244 ! primary motor neuron relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000026 ! Segmentation:14-19 somites created_by: Ceri creation_date: 2009-06-18T04:38:21Z [Term] id: ZFA:0005183 name: MiD2i namespace: zebrafish_anatomy def: "Hindbrain interneuron that is part of rhombomere 5 with one dorsal neuron in each hemi-rhombomere. The axonal projection is ipsilateral." [ZFIN:ZDB-PUB-961014-770] comment: This term is a leaf node in the zebrafish AO and is not in the CL. subset: cell_slim synonym: "middle dorsal 2 ipsilateral interneuron " EXACT [] xref: TAO:0005183 is_a: ZFA:0005209 ! hindbrain interneuron is_a: ZFA:0005865 ! reticulospinal neuron relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000823 ! rhombomere 5 relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-06-18T05:05:22Z [Term] id: ZFA:0005184 name: MiD2cl namespace: zebrafish_anatomy def: "Hindbrain interneuron, part of rhombomere 5, with one dorsal, caudal-lateral neuron in each hemi-rhombomere. The fibers pass through the lateral longitudinal fasciculus." [ZFIN:ZDB-PUB-961014-770] comment: This term is a leaf node in the zebrafish AO and is not in the CL. subset: cell_slim synonym: "middle dorsal 2 contralateral llf interneuron " EXACT [] xref: TAO:0005184 is_a: ZFA:0005209 ! hindbrain interneuron is_a: ZFA:0005865 ! reticulospinal neuron relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000823 ! rhombomere 5 relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-06-18T05:16:33Z [Term] id: ZFA:0005185 name: MiD2cm namespace: zebrafish_anatomy def: "Hindbrain interneuron, part of rhombomere 5, with one dorsal, caudal-medial neuron in each hemi-rhombomere. The fibers pass through the medial longitudinal fasciculus." [ZFIN:ZDB-PUB-961014-770] comment: This term is a leaf node in the zebrafish AO and is not in the CL. subset: cell_slim synonym: "middle dorsal 2 contralateral mlf interneuron " EXACT [] xref: TAO:0005185 is_a: ZFA:0005209 ! hindbrain interneuron is_a: ZFA:0005865 ! reticulospinal neuron relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000823 ! rhombomere 5 relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-06-18T05:18:53Z [Term] id: ZFA:0005186 name: CoB namespace: zebrafish_anatomy def: "A bifurcate interneuron. It is a commissural neuron with both ascending and descending axons in the ventrolateral cord contralateral to its cell body." [ZFIN:ZDB-PUB-961014-649] comment: This term is a leaf node in the zebrafish AO and is not in the CL.\n\nThis may be the same as CoBL. subset: cell_slim synonym: "bifurcate commissural interneuron" EXACT [] xref: TAO:0005186 is_a: ZFA:0005231 ! bifurcate interneuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-06-23T11:38:16Z [Term] id: ZFA:0005187 name: MiM1 namespace: zebrafish_anatomy def: "Hindbrain interneuron that is part of rhombomere 4, with one medial neuron in each hemi-rhombomere." [ZFIN:ZDB-PUB-961014-770] subset: cell_slim synonym: "middle medial interneuron " EXACT [] xref: TAO:0005187 is_a: ZFA:0005209 ! hindbrain interneuron is_a: ZFA:0005865 ! reticulospinal neuron relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001032 ! rhombomere 4 relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-06-23T12:31:49Z [Term] id: ZFA:0005188 name: MiR1 namespace: zebrafish_anatomy def: "Hindbrain interneuron that is part of rhombomere 4 with one rostral neuron in each hemi-rhombomere." [ZFIN:ZDB-PUB-961014-770] subset: cell_slim synonym: "middle rostral 1 interneuron " EXACT [] xref: TAO:0005188 is_a: ZFA:0005209 ! hindbrain interneuron is_a: ZFA:0005865 ! reticulospinal neuron relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001032 ! rhombomere 4 relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-06-23T12:33:39Z [Term] id: ZFA:0005189 name: MiR2 namespace: zebrafish_anatomy def: "Hindbrain interneuron that is part of rhombomere 5 with one rostral neuron in each hemi-rhombomere." [ZFIN:ZDB-PUB-961014-770] subset: cell_slim synonym: "middle rostral 2 interneuron " EXACT [] xref: TAO:0005189 is_a: ZFA:0005209 ! hindbrain interneuron is_a: ZFA:0005865 ! reticulospinal neuron relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000823 ! rhombomere 5 relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-06-23T12:40:02Z [Term] id: ZFA:0005190 name: MiV1 namespace: zebrafish_anatomy def: "Hindbrain interneuron that is part of rhombomere 4 with six ventral neurons in each hemi-rhombomere." [ZFIN:ZDB-PUB-961014-770] subset: cell_slim synonym: "middle ventral 1 neuron " EXACT [] xref: TAO:0005190 is_a: ZFA:0005209 ! hindbrain interneuron is_a: ZFA:0005865 ! reticulospinal neuron relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001032 ! rhombomere 4 relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-06-23T01:10:53Z [Term] id: ZFA:0005191 name: MiV2 namespace: zebrafish_anatomy def: "Hindbrain interneuron that is part of rhombomere 5 with five ventral neurons in each hemi-rhombomere." [ZFIN:ZDB-PUB-961014-770] subset: cell_slim synonym: "middle ventral 2 neuron " EXACT [] xref: TAO:0005191 is_a: ZFA:0005209 ! hindbrain interneuron is_a: ZFA:0005865 ! reticulospinal neuron relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000823 ! rhombomere 5 relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-06-23T01:15:56Z [Term] id: ZFA:0005192 name: RoI2C namespace: zebrafish_anatomy def: "Hindbrain interneuron that is part of rhombomere 2 with two intermediate-caudal neurons in each hemi-rhombomere." [ZFIN:ZDB-PUB-961014-770] subset: cell_slim synonym: "rostral intermediate 2 caudal interneuron " EXACT [] xref: TAO:0005192 is_a: ZFA:0005209 ! hindbrain interneuron is_a: ZFA:0005865 ! reticulospinal neuron relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000822 ! rhombomere 2 relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-06-23T02:39:18Z [Term] id: ZFA:0005193 name: RoI2R namespace: zebrafish_anatomy def: "Hindbrain interneuron that is part of rhombomere 2 with one intermediate-rostral neuron in each hemi-rhombomere." [ZFIN:ZDB-PUB-961014-770] subset: cell_slim synonym: "rostral intermediate 2 rostral interneuron " EXACT [] xref: TAO:0005193 is_a: ZFA:0005209 ! hindbrain interneuron is_a: ZFA:0005865 ! reticulospinal neuron relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000822 ! rhombomere 2 relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-06-23T03:08:46Z [Term] id: ZFA:0005194 name: RoL1 namespace: zebrafish_anatomy def: "Hindbrain interneuron that is part of rhombomere 1 with twelve neurons in each hemi-rhombomere. Axon runs in the dorsal spinal cord. The RoL1 stem axon projects ipsilaterally along the brain stem and spinal cord. From the more lateral location of its spinal axon, RoL1's collaterals projected both ventrally and medially. The branching of RoL1 collaterals within the medulla, occur at multiple levels." [ZFIN:ZDB-PUB-030319-6, ZFIN:ZDB-PUB-961014-770] comment: May have 12 neurons in each hemi rhombomere ZDB-PUB-060217-9.\n7 neurons in each hemi rhombomere 080227-17 and 931014-770. subset: cell_slim synonym: "rostral lateral 1 interneuron " EXACT [] xref: TAO:0005194 is_a: ZFA:0005209 ! hindbrain interneuron is_a: ZFA:0005865 ! reticulospinal neuron relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001031 ! rhombomere 1 relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-06-23T03:22:51Z [Term] id: ZFA:0005195 name: MiD3cl namespace: zebrafish_anatomy def: "Hindbrain interneuron, part of rhombomere 6, with one caudal-lateral neuron in each hemi-rhombomere. The fibers pass through the lateral longitudinal fasciculus." [ZFIN:ZDB-PUB-961014-770] comment: This term is a leaf node in the zebrafish AO and is not in the CL. subset: cell_slim synonym: "middle dorsal 3 contralateral llf interneuron " EXACT [] xref: TAO:0005195 is_a: ZFA:0005209 ! hindbrain interneuron is_a: ZFA:0005865 ! reticulospinal neuron relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000069 ! rhombomere 6 relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-06-22T05:10:40Z [Term] id: ZFA:0005196 name: MiD3cm namespace: zebrafish_anatomy def: "Hindbrain interneuron, part of rhombomere 6, with one caudal-medial neuron in each hemi-rhombomere. The fibers pass through the medial longitudinal fasciculus." [ZFIN:ZDB-PUB-961014-770] comment: This term is a leaf node in the zebrafish AO and is not in the CL. subset: cell_slim synonym: "middle dorsal 3 contralateral mlf interneuron " EXACT [] xref: TAO:0005196 is_a: ZFA:0005209 ! hindbrain interneuron is_a: ZFA:0005865 ! reticulospinal neuron relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000069 ! rhombomere 6 relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-06-22T05:13:02Z [Term] id: ZFA:0005197 name: MiD3i namespace: zebrafish_anatomy def: "Hindbrain interneuron that is part of rhombomere 6 with one dorsal neuron in each hemi-rhombomere. The axonal projection is ipsilateral." [ZFIN:ZDB-PUB-961014-770] comment: This term is a leaf node in the zebrafish AO and is not in the CL. subset: cell_slim synonym: "middle dorsal 3 ipsilateral interneuron " EXACT [] xref: TAO:0005197 is_a: ZFA:0005209 ! hindbrain interneuron is_a: ZFA:0005865 ! reticulospinal neuron relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000069 ! rhombomere 6 relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-06-22T05:15:04Z [Term] id: ZFA:0005198 name: RoL2 namespace: zebrafish_anatomy def: "Hindbrain interneuron that is part of rhombomere 2 with 4 lateral neurons in each hemi-rhombomere." [ZFIN:ZDB-PUB-961014-770] subset: cell_slim synonym: "rostral lateral 2 interneuron " EXACT [] xref: TAO:0005198 is_a: ZFA:0005209 ! hindbrain interneuron is_a: ZFA:0005865 ! reticulospinal neuron relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000822 ! rhombomere 2 relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-06-26T04:33:20Z [Term] id: ZFA:0005199 name: RoL2r namespace: zebrafish_anatomy def: "A RoL2 interneuron that is part of rhombomere 2." [ZFIN:ZDB-PUB-090217-9] subset: cell_slim synonym: "rostral lateral 2 rostral interneuron " EXACT [] xref: TAO:0005199 is_a: ZFA:0005198 ! RoL2 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000822 ! rhombomere 2 relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-06-26T04:48:39Z [Term] id: ZFA:0005200 name: RoL2c namespace: zebrafish_anatomy def: "A RoL2 interneuron that is part of rhombomere 2." [ZFIN:ZDB-PUB-090217-9] subset: cell_slim synonym: "rostral lateral 2 caudal interneuron " EXACT [] xref: TAO:0005200 is_a: ZFA:0005198 ! RoL2 relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000822 ! rhombomere 2 relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-06-26T04:49:28Z [Term] id: ZFA:0005201 name: RoL3 namespace: zebrafish_anatomy def: "Hindbrain interneuron that is part of rhombomere 3 with 1 lateral neuron in each hemi-rhombomere." [ZFIN:ZDB-PUB-961014-770] subset: cell_slim synonym: "rostral lateral 3 interneuron " EXACT [] xref: TAO:0005201 is_a: ZFA:0005209 ! hindbrain interneuron is_a: ZFA:0005865 ! reticulospinal neuron relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000948 ! rhombomere 3 relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-06-26T05:06:36Z [Term] id: ZFA:0005202 name: RoM1c namespace: zebrafish_anatomy def: "Hindbrain interneuron that is part of rhombomere 1 with one medial-caudal neuron in each hemi-rhombomere." [ZFIN:ZDB-PUB-961014-770] subset: cell_slim synonym: "rostral medial 1 caudal interneuron " EXACT [] xref: TAO:0005202 is_a: ZFA:0005209 ! hindbrain interneuron is_a: ZFA:0005865 ! reticulospinal neuron relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001031 ! rhombomere 1 relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-06-26T05:08:26Z [Term] id: ZFA:0005203 name: RoM1r namespace: zebrafish_anatomy def: "Hindbrain interneuron that is part of rhombomere 1 with one medial-rostral neuron in each hemi-rhombomere." [ZFIN:ZDB-PUB-961014-770] subset: cell_slim synonym: "rostral medial 1 rostral interneuron " EXACT [] xref: TAO:0005203 is_a: ZFA:0005209 ! hindbrain interneuron is_a: ZFA:0005865 ! reticulospinal neuron relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001031 ! rhombomere 1 relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-06-26T05:09:50Z [Term] id: ZFA:0005204 name: RoV3 namespace: zebrafish_anatomy def: "Hindbrain interneuron that is part of rhombomere 3 with three ventral neurons in each hemi-rhombomere." [ZFIN:ZDB-PUB-961014-770] subset: cell_slim synonym: "rostral ventral 3 interneuron " EXACT [] is_a: ZFA:0005209 ! hindbrain interneuron is_a: ZFA:0005865 ! reticulospinal neuron relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000948 ! rhombomere 3 relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-06-29T02:14:08Z [Term] id: ZFA:0005205 name: RoM2l namespace: zebrafish_anatomy def: "Hindbrain interneuron that is part of rhombomere 2 with one medial-lateral neuron in each hemi-rhombomere." [ZFIN:ZDB-PUB-961014-770] subset: cell_slim synonym: "rostral medial 2 lateral interneuron " EXACT [] xref: TAO:0005205 is_a: ZFA:0005209 ! hindbrain interneuron is_a: ZFA:0005865 ! reticulospinal neuron relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000822 ! rhombomere 2 relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-06-29T02:43:42Z [Term] id: ZFA:0005206 name: RoM2m namespace: zebrafish_anatomy def: "Hindbrain interneuron that is part of rhombomere 2 with one medial neuron in each hemi-rhombomere." [ZFIN:ZDB-PUB-961014-770] subset: cell_slim synonym: "rostral medial 2 medial interneuron " EXACT [] xref: TAO:0005206 is_a: ZFA:0005209 ! hindbrain interneuron is_a: ZFA:0005865 ! reticulospinal neuron relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000822 ! rhombomere 2 relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-06-29T02:45:01Z [Term] id: ZFA:0005207 name: RoM3l namespace: zebrafish_anatomy def: "Hindbrain interneuron that is part of rhombomere 3 with one lateral neuron in each hemi-rhombomere." [ZFIN:ZDB-PUB-961014-770] subset: cell_slim synonym: "rostral medial 3 lateral interneuron " EXACT [] xref: TAO:0005207 is_a: ZFA:0005209 ! hindbrain interneuron is_a: ZFA:0005865 ! reticulospinal neuron relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000948 ! rhombomere 3 relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-06-29T02:46:19Z [Term] id: ZFA:0005208 name: RoM3m namespace: zebrafish_anatomy def: "Hindbrain interneuron that is part of rhombomere 32 with two medial neurons in each hemi-rhombomere." [ZFIN:ZDB-PUB-961014-770] subset: cell_slim synonym: "rostral medial 3 medial interneuron " RELATED [] xref: TAO:0005208 is_a: ZFA:0005209 ! hindbrain interneuron is_a: ZFA:0005865 ! reticulospinal neuron relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000948 ! rhombomere 3 relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-06-29T02:52:04Z [Term] id: ZFA:0005209 name: hindbrain interneuron namespace: zebrafish_anatomy def: "Is a CNS interneuron that is part of the hindbrain." [GOC:cvs, ORCiD:0000-0002-2244-7917] subset: cell_slim xref: TAO:0005209 is_a: ZFA:0009191 ! CNS interneuron relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000029 ! hindbrain relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-07-08T10:21:27Z [Term] id: ZFA:0005210 name: midbrain interneuron namespace: zebrafish_anatomy def: "CNS interneurons located in the midbrain." [GOC:cvs, ORCiD:0000-0002-2244-7917] subset: cell_slim xref: TAO:0005210 is_a: ZFA:0009191 ! CNS interneuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-07-08T11:14:28Z [Term] id: ZFA:0005211 name: MeL namespace: zebrafish_anatomy def: "Midbrain interneuron in the lateral midbrain." [ZFIN:ZDB-PUB-961014-758] subset: cell_slim synonym: "mesencephalon lateral interneuron" EXACT [] xref: TAO:0005211 is_a: ZFA:0005210 ! midbrain interneuron relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000128 ! midbrain relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-07-08T12:35:19Z [Term] id: ZFA:0005212 name: MeM namespace: zebrafish_anatomy def: "Midbrain interneuron located in the medial midbrain." [ZFIN:ZDB-PUB-961014-758] subset: cell_slim synonym: "mesencephalon medial interneuron" EXACT [] xref: TAO:0005212 is_a: ZFA:0005210 ! midbrain interneuron is_a: ZFA:0005865 ! reticulospinal neuron relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000128 ! midbrain relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-07-08T01:05:12Z [Term] id: ZFA:0005213 name: MeLr namespace: zebrafish_anatomy def: "Midbrain interneuron at the rostral position in the lateral midbrain." [ZFIN:ZDB-PUB-090217-9] subset: cell_slim synonym: "mesencephalon lateral rostral interneuron" EXACT [] xref: TAO:0005213 is_a: ZFA:0005210 ! midbrain interneuron relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000128 ! midbrain relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-07-08T01:26:45Z [Term] id: ZFA:0005214 name: MeLc namespace: zebrafish_anatomy def: "Midbrain interneuron at the caudal position in the lateral midbrain." [ZFIN:ZDB-PUB-090217-9] subset: cell_slim synonym: "mesencephalon lateral caudal interneuron" EXACT [] xref: TAO:0005214 is_a: ZFA:0005210 ! midbrain interneuron relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000128 ! midbrain relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-07-08T01:29:37Z [Term] id: ZFA:0005215 name: MeLm namespace: zebrafish_anatomy def: "Midbrain interneuron at the medial position in the lateral midbrain." [ZFIN:ZDB-PUB-090217-9] subset: cell_slim synonym: "mesencephalon lateral medial interneuron" EXACT [] xref: TAO:0005215 is_a: ZFA:0005210 ! midbrain interneuron relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000128 ! midbrain relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-07-09T02:21:45Z [Term] id: ZFA:0005216 name: MeM1 namespace: zebrafish_anatomy def: "Midbrain interneuron located in the medial midbrain." [ZFIN:ZDB-PUB-090217-9] subset: cell_slim synonym: "mesencephalon medial 1 interneuron" EXACT [] xref: TAO:0005216 is_a: ZFA:0005210 ! midbrain interneuron relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000128 ! midbrain relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-07-09T02:23:47Z [Term] id: ZFA:0005217 name: CaV namespace: zebrafish_anatomy def: "Hindbrain interneuron that is part of rhombomere 7, with 2 ventral neurons in each hemi-rhombomere." [ZFIN:ZDB-PUB-961014-770] subset: cell_slim synonym: "caudal ventral interneuron" EXACT [] xref: TAO:0005217 is_a: ZFA:0005209 ! hindbrain interneuron relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000949 ! rhombomere 7 relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-07-09T02:33:31Z [Term] id: ZFA:0005218 name: CaD namespace: zebrafish_anatomy def: "Hindbrain interneuron that is part of rhombomere 7, with 1 dorsal neuron in each hemi-rhombomere." [ZFIN:ZDB-PUB-961014-770] subset: cell_slim synonym: "caudal dorsal interneuron" EXACT [] xref: TAO:0005218 is_a: ZFA:0005209 ! hindbrain interneuron relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000949 ! rhombomere 7 relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-07-09T02:42:52Z [Term] id: ZFA:0005219 name: choroid plexus vascular circuit namespace: zebrafish_anatomy def: "Cranial vasculature where the posterior cerebral veins and the trans-choroid plexus branch form a circuit around the 4th ventricle choroid plexus." [ZFIN:ZDB-PUB-080908-11] synonym: "choroid vascular circuit" RELATED [] synonym: "CVC" EXACT [] xref: TAO:0005219 is_a: ZFA:0000099 ! brain vasculature relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001443 ! choroid plexus relationship: start ZFS:0000038 ! Larval:Day 6 created_by: Ceri creation_date: 2009-07-09T02:58:20Z [Term] id: ZFA:0005220 name: larval melanophore stripe namespace: zebrafish_anatomy def: "A melanophore stripe that forms the immature pigment pattern." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0005220 is_a: ZFA:0001463 ! melanophore stripe relationship: end ZFS:0000040 ! Larval:Days 14-20 relationship: start ZFS:0000030 ! Pharyngula:Prim-15 created_by: Ceri creation_date: 2009-07-09T03:59:45Z [Term] id: ZFA:0005221 name: dorsal larval melanophore stripe namespace: zebrafish_anatomy def: "A larval melanophore stripe that forms a band extending from the head to the tail along the dorsal apex of the myotomes." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0005221 is_a: ZFA:0005220 ! larval melanophore stripe relationship: end ZFS:0000040 ! Larval:Days 14-20 relationship: start ZFS:0000030 ! Pharyngula:Prim-15 created_by: Ceri creation_date: 2009-07-09T04:04:10Z [Term] id: ZFA:0005222 name: ventral larval melanophore stripe namespace: zebrafish_anatomy def: "A larval melanophore stripe that forms a band, of pigmentation extending from the bases of the eyes on each side of the midline to the top of the tail, that underlies the myotomes bilaterally, still is dorsal to the yolk." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0005222 is_a: ZFA:0005220 ! larval melanophore stripe relationship: end ZFS:0000040 ! Larval:Days 14-20 relationship: start ZFS:0000031 ! Pharyngula:Prim-25 created_by: Ceri creation_date: 2009-07-09T04:05:57Z [Term] id: ZFA:0005223 name: lateral larval melanophore stripe namespace: zebrafish_anatomy def: "The larval melanophore stripe that is at the level of the horizontal myoseptum." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0005223 is_a: ZFA:0005220 ! larval melanophore stripe relationship: end ZFS:0000040 ! Larval:Days 14-20 relationship: start ZFS:0000032 ! Pharyngula:High-pec created_by: Ceri creation_date: 2009-07-09T04:29:18Z [Term] id: ZFA:0005224 name: yolk larval melanophore stripe namespace: zebrafish_anatomy def: "The larval melanophore stripe that forms a band over the ventral surface of the yolk sac." [ZFIN:ZDB-PUB-961014-576] xref: TAO:0005224 is_a: ZFA:0005220 ! larval melanophore stripe relationship: end ZFS:0000040 ! Larval:Days 14-20 relationship: start ZFS:0000035 ! Larval:Protruding-mouth created_by: Ceri creation_date: 2009-07-09T04:30:34Z [Term] id: ZFA:0005225 name: lower lip namespace: zebrafish_anatomy def: "Lip that covers the lower portion of the mouth." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0002060 is_a: ZFA:0007006 ! lip relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-07-09T04:42:58Z [Term] id: ZFA:0005226 name: upper lip namespace: zebrafish_anatomy def: "Lip that covers the lower portion of the mouth." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0001970 is_a: ZFA:0007006 ! lip relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-07-09T04:43:52Z [Term] id: ZFA:0005227 name: protoneuromast namespace: zebrafish_anatomy def: "A group of about 20 cells deposited by the migrating lateral line primordium. A few hours after deposition these cells mature to form the neuromast." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-070907-34, ZFIN:ZDB-PUB-080630-20] synonym: "immature neuromast" RELATED [] synonym: "proto neuromast" RELATED [] synonym: "proto-neuromast" RELATED [] xref: TAO:0005227 is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000034 ! lateral line system relationship: start ZFS:0000028 ! Segmentation:26+ somites created_by: Ceri creation_date: 2009-07-09T04:49:53Z [Term] id: ZFA:0005229 name: optic choroid namespace: zebrafish_anatomy def: "A portion of tissue that contains the choroid vasculature. It lies at the back of the eye." [GOC:cvs, ISBN:1402070861, ORCiD:0000-0002-2244-7917] synonym: "choroid" EXACT [ISBN:1402070861] xref: TAO:0005229 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005567 ! posterior segment eye relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-07-14T02:05:16Z [Term] id: ZFA:0005230 name: CoBL namespace: zebrafish_anatomy def: "A bifurcate interneuron where the axon projects ventrally, crossing the spinal cord ventral to the Mauthner axons before bifurcating and extending dorsally." [ZFIN:ZDB-PUB-010807-17] subset: cell_slim synonym: "commissural bifurcating longitudinal" EXACT [] xref: TAO:0005230 is_a: ZFA:0005231 ! bifurcate interneuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-07-17T01:12:14Z [Term] id: ZFA:0005231 name: bifurcate interneuron namespace: zebrafish_anatomy def: "Is a spinal interneuron that has an axon that splits into roughly equal size branches." [GOC:cvs, ORCiD:0000-0002-2244-7917] subset: cell_slim xref: TAO:0005231 is_a: ZFA:0000778 ! spinal cord interneuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-07-17T01:22:50Z [Term] id: ZFA:0005232 name: MCoD namespace: zebrafish_anatomy def: "A multipolar interneuron with branching dendrites. The axon extend ventrally, lateral to the Mauthner axons before crossing the cord and descending ventrally." [ZFIN:ZDB-PUB-010807-17] subset: cell_slim synonym: "larval VeLD" RELATED [] synonym: "multipolar commissural descending interneuron" EXACT [] xref: TAO:0005232 is_a: ZFA:0000778 ! spinal cord interneuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000026 ! Segmentation:14-19 somites created_by: Ceri creation_date: 2009-07-17T03:46:32Z [Term] id: ZFA:0005233 name: CiD namespace: zebrafish_anatomy def: "A interneuron of the spinal cord with an ipsilateral axon that extends ventral to the Mauthner axon then turns dorsally and caudally and sometimes has a minor ascending branch." [ZFIN:ZDB-PUB-010807-17] subset: cell_slim synonym: "circumferential descending interneuron" EXACT [] synonym: "commissural descending interneurons" EXACT [ZFIN:ZDB-PUB-081114-2] synonym: "V2a interneuron" RELATED [] xref: TAO:0005233 is_a: ZFA:0000778 ! spinal cord interneuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000026 ! Segmentation:14-19 somites created_by: Ceri creation_date: 2009-07-17T03:55:01Z [Term] id: ZFA:0005234 name: CoLA namespace: zebrafish_anatomy def: "A spinal interneuron with a dorsal dendrite that extends caudally. CoLA also has midlateral process that extend rostrally and caudally, the axon crosses the cord dorsal to the Mauthner cell and ascends, extending dorsally. Axon has minor descending branch." [ZFIN:ZDB-PUB-010807-17] subset: cell_slim synonym: "commissural longitudinal ascending interneuron" EXACT [] xref: TAO:0005234 is_a: ZFA:0000778 ! spinal cord interneuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000026 ! Segmentation:14-19 somites created_by: Ceri creation_date: 2009-07-17T04:14:51Z [Term] id: ZFA:0005235 name: UCoD namespace: zebrafish_anatomy def: "A unipolar spinal interneuron that forms dendritic trunk laterally with extensive dendritic branching. The axon extends ventrally, lateral to the Mauthner axons before crssoing the cord and descending ventrally." [ZFIN:ZDB-PUB-010807-17] subset: cell_slim synonym: "unipolar commissural descending interneuron" RELATED [] xref: TAO:0005235 is_a: ZFA:0000778 ! spinal cord interneuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000026 ! Segmentation:14-19 somites created_by: Ceri creation_date: 2009-07-17T04:26:07Z [Term] id: ZFA:0005236 name: basophilic erythroblast namespace: zebrafish_anatomy def: "A nucleated immature erythrocyte, having cytoplasm generally similar to that of the earlier proerythroblast but sometimes even more basophilic, and usually regular in outline. The nucleus is still relatively large, but the chromatin strands are thicker and more deeply staining, giving a coarser appearance; the nucleoli have disappeared." [ZFIN:ZDB-PUB-070221-1] subset: cell_slim synonym: "basophilic normoblast" EXACT [ZFIN:ZDB-PUB-070221-1] synonym: "early erythroblast" EXACT [ZFIN:ZDB-PUB-070221-1] synonym: "early normoblast" RELATED [ZFIN:ZDB-PUB-070221-1] synonym: "prorubricyte" EXACT [ZFIN:ZDB-PUB-070221-1] xref: CL:0000549 xref: TAO:0005236 is_a: ZFA:0005237 ! erythroblast relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000030 ! Pharyngula:Prim-15 created_by: Ceri creation_date: 2009-08-10T05:29:27Z [Term] id: ZFA:0005237 name: erythroblast namespace: zebrafish_anatomy def: "A nucleated precursor of an erythrocyte." [ZFIN:ZDB-PUB-070221-1] subset: cell_slim synonym: "normoblast" EXACT [] xref: CL:0000765 xref: TAO:0005237 is_a: ZFA:0009325 ! erythroid lineage cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-08-10T05:13:41Z [Term] id: ZFA:0005238 name: juxtaglomerular cell namespace: zebrafish_anatomy def: "A smooth muscle cell that synthesizes, stores, and secretes the enzyme renin. This cell type are located in the wall of the afferent arteriole at the entrance to the glomerulus. While having a different origin than other kidney smooth muscle cells, this cell type expresses smooth muscle actin upon maturation." [GOC:cvs, GOC:tfm, ORCiD:0000-0002-2244-7917, PMID:11457727] subset: cell_slim synonym: "kidney granular cell" EXACT [] synonym: "renin secreting cell" EXACT [] xref: CL:0000648 xref: TAO:0005238 is_a: ZFA:0009118 ! smooth muscle cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000529 ! kidney relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-08-10T05:41:07Z [Term] id: ZFA:0005239 name: micropylar cell namespace: zebrafish_anatomy def: "Is a specialized pore forming cell of the follicle, located adjacent to the animal pole of the oocyte. The micropylar cell makes the single micropyle (pore) through the chorion through which the sperm fertilizes the egg." [ZFIN:ZDB-PUB-080630-14] subset: cell_slim synonym: "plug cell" EXACT [] xref: CL:0007022 xref: TAO:0005239 is_a: ZFA:0009000 ! cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001110 ! ovarian follicle relationship: start ZFS:0000043 ! Juvenile:Days 45-89 created_by: Ceri creation_date: 2009-08-10T06:26:10Z [Term] id: ZFA:0005240 name: Kolmer-Agduhr neuron namespace: zebrafish_anatomy def: "Kolmer-Agduhr neurons are ciliated GABAergic neurons that contact the central canal of the spinal cord and have ipsilateral ascending axons." [ZFIN:ZDB-PUB-080825-21] subset: cell_slim synonym: "KA cell" EXACT [] synonym: "KA interneuron" EXACT [ZFIN:ZDB-PUB-041115-5] synonym: "KA neuron" EXACT [ZFIN:ZDB-PUB-980624-10] synonym: "Kolmer-Agduhr cell" EXACT [] xref: CL:0005007 xref: TAO:0005240 is_a: ZFA:0000778 ! spinal cord interneuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000023 ! Segmentation:1-4 somites created_by: Ceri creation_date: 2009-08-11T02:50:27Z [Term] id: ZFA:0005241 name: polychromatophilic erythroblast namespace: zebrafish_anatomy def: "A nucleated, immature erythrocyte in which the nucleus occupies a relatively smaller part of the cell than in its precursor, the basophilic erythroblast. The cytoplasm is beginning to acquire hemoglobin and thus is no longer a purely blue color, but takes on an acidophilic tint, which becomes progressively more marked as the cell matures. The chromatin of the nucleus is arranged in coarse, deeply staining clumps." [ZFIN:ZDB-PUB-070221-1] subset: cell_slim synonym: "intermediate erythroblast" EXACT [] synonym: "intermediate normoblast" RELATED [] synonym: "polychromatic erythroblast" EXACT [] synonym: "polychromatic normoblast" EXACT [] synonym: "polychromatophilic normoblast" RELATED [] synonym: "rubricyte" EXACT [] xref: CL:0000550 xref: TAO:0005241 is_a: ZFA:0005237 ! erythroblast relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-08-11T03:38:32Z [Term] id: ZFA:0005242 name: multi-ciliated epithelial cell namespace: zebrafish_anatomy alt_id: ZFA:0009377 def: "A ciliated epithelial cell with many cilia." [CL:Curator] subset: cell_slim synonym: "multiciliated epithelial cell" EXACT [] xref: CL:0005012 xref: TAO:0005242 is_a: ZFA:0009035 ! ciliated epithelial cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-08-11T04:29:39Z [Term] id: ZFA:0005243 name: single ciliated epithelial cell namespace: zebrafish_anatomy alt_id: ZFA:0009378 def: "A ciliated epithelial cell with a single cilium." [CL:curator] subset: cell_slim synonym: "single-ciliated epithelial cell" EXACT [] xref: CL:0005013 xref: TAO:0005243 is_a: ZFA:0009035 ! ciliated epithelial cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-08-11T04:30:15Z [Term] id: ZFA:0005244 name: auditory epithelial support cell namespace: zebrafish_anatomy def: "A non-sensory cell that extends from the basement membrane to the apical surface of the auditory epithelium and provides support for auditory hair cells." [CL:curator] subset: cell_slim synonym: "auditory support cell" EXACT [] xref: CL:0005014 xref: TAO:0005244 is_a: ZFA:0009000 ! cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-08-11T04:41:03Z [Term] id: ZFA:0005245 name: xanthoblast namespace: zebrafish_anatomy alt_id: ZFA:0005330 def: "A non-terminally differentiated cell that originates from the neural crest and differentiates into a xanthophore." [CL:curator] subset: cell_slim xref: CL:0005002 xref: TAO:0002148 is_a: ZFA:0009000 ! cell relationship: develops_from ZFA:0009165 ! neural crest cell relationship: end ZFS:0000032 ! Pharyngula:High-pec relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-08-11T04:53:40Z [Term] id: ZFA:0005246 name: regeneration fibroblast namespace: zebrafish_anatomy def: "Is a fibroblast that differentiates from the de-differentiated cells of the blastema." [GOC:cvs, ORCiD:0000-0002-2244-7917] subset: cell_slim synonym: "blastemal fibroblast" EXACT [] synonym: "blastemal fibroblasts" EXACT PLURAL [] xref: TAO:0005246 is_a: ZFA:0009026 ! fibroblast relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005147 ! regenerating tissue relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-08-12T01:43:26Z [Term] id: ZFA:0005247 name: CiA namespace: zebrafish_anatomy def: "Interneurons of the spinal cord that arise from the V1 proliferation domain. The CiA neurons inhibit motoneurons, other ventral interneurons and also inhibit dorsal sensory neurons involved in sensory gating,. CiA have ipsilateral axonal projections in both motor and sensory regions of spinal cord." [ZFIN:ZDB-PUB-040625-12, ZFIN:ZDB-PUB-060418-1] subset: cell_slim synonym: "circumferential ascending interneuron" EXACT [] synonym: "V1 interneuron" RELATED [] xref: TAO:0005247 is_a: ZFA:0000778 ! spinal cord interneuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000026 ! Segmentation:14-19 somites created_by: Ceri creation_date: 2009-08-21T04:22:15Z [Term] id: ZFA:0005248 name: trans-choroid plexus branch namespace: zebrafish_anatomy def: "Vein segment that connects the PCeVs in the choroid plexus." [ZFIN:ZDB-PUB-080908-10] synonym: "TCB" EXACT [ZFIN:ZDB-PUB-080908-10] xref: TAO:0005248 is_a: ZFA:0000082 ! vein relationship: develops_from ZFA:0005027 ! posterior cerebral vein relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005219 ! choroid plexus vascular circuit relationship: start ZFS:0000038 ! Larval:Day 6 created_by: Ceri creation_date: 2009-11-02T04:07:52Z [Term] id: ZFA:0005249 name: vasculature namespace: zebrafish_anatomy def: "Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the organism." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0001079 xref: TAO:0005249 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000010 ! cardiovascular system relationship: start ZFS:0000027 ! Segmentation:20-25 somites created_by: Ceri creation_date: 2009-11-10T02:31:54Z [Term] id: ZFA:0005250 name: capillary namespace: zebrafish_anatomy def: "Microvessel of the blood circulation system lined with vascular endothelial cells." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005250 is_a: ZFA:0005251 ! microcirculatory vessel relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001079 ! blood vasculature relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-11-11T01:15:32Z [Term] id: ZFA:0005251 name: microcirculatory vessel namespace: zebrafish_anatomy def: "A portion of tissue that consists of a tube composed of epithelial cells that connects larger vessels." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "vasculature" RELATED [] xref: TAO:0005251 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005249 ! vasculature relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-11-11T01:16:24Z [Term] id: ZFA:0005252 name: lymphatic capillary namespace: zebrafish_anatomy def: "Microvessel of the lymphatic system lined with a single layer of overlapping endothelial cells." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005252 is_a: ZFA:0005251 ! microcirculatory vessel relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005105 ! lymph vasculature relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-11-11T01:27:39Z [Term] id: ZFA:0005253 name: renal glomerular capsule epithelium namespace: zebrafish_anatomy def: "Simple squamous epithelium that lines the capsule of the renal glomerulus." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "parietal epithelial layer" EXACT [] xref: TAO:0005253 is_a: ZFA:0001498 ! simple squamous epithelium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005254 ! renal glomerular capsule relationship: start ZFS:0000039 ! Larval:Days 7-13 created_by: Ceri creation_date: 2009-11-11T01:39:19Z [Term] id: ZFA:0005254 name: renal glomerular capsule namespace: zebrafish_anatomy def: "Portion of tissue that encapsulates the glomerulus of the renal corpuscle." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] synonym: "Bowman's capsule " EXACT [] xref: TAO:0005254 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005281 ! renal corpuscle relationship: start ZFS:0000039 ! Larval:Days 7-13 created_by: Ceri creation_date: 2009-11-11T01:45:02Z [Term] id: ZFA:0005255 name: arteriole namespace: zebrafish_anatomy def: "Multi-tissue structure part of the blood vasculature. Feeds into capillaries. Arterioles carry blood away from the heart." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0002138 is_a: ZFA:0005314 ! blood vessel relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001079 ! blood vasculature relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-11-11T01:46:54Z [Term] id: ZFA:0005256 name: intervillus pockets namespace: zebrafish_anatomy def: "A portion of tissue formed between the base of the intestinal villi that is part of the intestinal epithelium where intestinal stem cells are located. In the intestine no crypts are present, but, the regions between the villi, the intervillus pockets, have a crypt-like function. Cells are produced in the intervillus pockets and shed from the villus tips." [ZFIN:ZDB-PUB-050209-3] synonym: "intestinal crypt" RELATED [ZFIN:ZDB-PUB-090217-11] xref: TAO:0005256 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005124 ! intestinal epithelium relationship: start ZFS:0000037 ! Larval:Day 5 created_by: Ceri creation_date: 2010-01-07T12:26:13Z [Term] id: ZFA:0005257 name: blood vessel endothelium namespace: zebrafish_anatomy def: "The vascular endothelium that lines blood vasculature." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005257 is_a: ZFA:0001639 ! vascular endothelium relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-11-11T02:16:38Z [Term] id: ZFA:0005258 name: lymph vessel endothelium namespace: zebrafish_anatomy def: "The vascular endothelium that lines the lymph vessels." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005258 is_a: ZFA:0001639 ! vascular endothelium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005844 ! lymph vessel relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-11-11T02:18:09Z [Term] id: ZFA:0005259 name: continuous blood vessel endothelium namespace: zebrafish_anatomy def: "Blood vessel endothelium that has tight junctions between the endothelial cells." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005259 is_a: ZFA:0005257 ! blood vessel endothelium relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-11-11T02:19:54Z [Term] id: ZFA:0005260 name: fenestrated blood vessel endothelium namespace: zebrafish_anatomy def: "Blood vessel endothelium that has pores that allow passage small molecules and proteins." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005260 is_a: ZFA:0005257 ! blood vessel endothelium relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-11-11T02:21:55Z [Term] id: ZFA:0005261 name: sinusoidal blood vessel endothelium namespace: zebrafish_anatomy def: "Fenestrated blood vessel endothelium with pores that are large enough for blood cells to pass. The basal lamina and gap junctions may be discontinuous." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005261 is_a: ZFA:0005260 ! fenestrated blood vessel endothelium relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-11-11T02:51:27Z [Term] id: ZFA:0005262 name: caudal fin dorsal procurrent ray namespace: zebrafish_anatomy def: "Caudal procurrent ray that is dorsally located on the caudal fin skeleton. There are 6 dorsal procurrent rays in the caudal fin." [TAO:curator, ZFIN:ZDB-PUB-031103-13] synonym: "dorsal procurrent caudal-fin ray" EXACT [] xref: TAO:0001829 is_a: ZFA:0001584 ! caudal fin procurrent ray relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-12-02T02:06:39Z [Term] id: ZFA:0005263 name: caudal fin ventral procurrent ray namespace: zebrafish_anatomy def: "Caudal procurrent ray that is ventrally located on the caudal fin skeleton. There are 5 ventral procurrent rays in the caudal fin." [TAO:curator, ZFIN:ZDB-PUB-031103-13] synonym: "ventral procurrent ray" EXACT [] xref: TAO:0001830 is_a: ZFA:0001584 ! caudal fin procurrent ray relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-12-02T02:13:14Z [Term] id: ZFA:0005264 name: primordial ligament namespace: zebrafish_anatomy def: "Ligament that connects the maxilla with the lower jaw." [TAO:curator] synonym: "articular-maxillary ligament " EXACT [doi:10.1111/j.1096-3642.1964.tb00493.x] synonym: "ligamentum primordiale " EXACT [] synonym: "maxillo-mandibular ligament" EXACT [] xref: TAO:0001828 is_a: ZFA:0001675 ! ligament relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-12-02T02:28:51Z [Term] id: ZFA:0005265 name: premaxillary-maxillary ligament namespace: zebrafish_anatomy def: "Ligament that connects the premaxilla to the maxilla." [TAO:curator] xref: TAO:0001827 is_a: ZFA:0001675 ! ligament relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-12-02T02:52:49Z [Term] id: ZFA:0005266 name: dorsal longitudinal fasciculus namespace: zebrafish_anatomy comment: The DLF in zebrafish is not homologous to the Mammalian DLF. Mammalian DLF is in brain, the fish DLF is in spinal cord. synonym: "DLF" RELATED [] is_a: ZFA:0000318 ! brainstem and spinal white matter relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-12-02T04:19:10Z [Term] id: ZFA:0005267 name: erector muscle namespace: zebrafish_anatomy def: "Muscle that moves parts of the body in a superior direction to an erect position. Antagonistic to depressor muscle." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005267 is_a: ZFA:0005277 ! skeletal muscle relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-12-03T05:15:15Z [Term] id: ZFA:0005268 name: adductor muscle namespace: zebrafish_anatomy def: "A muscle that brings a body part closer to the sagittal plane of the body." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0002136 is_a: ZFA:0005277 ! skeletal muscle relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-12-04T12:59:52Z [Term] id: ZFA:0005269 name: abductor muscle namespace: zebrafish_anatomy def: "A muscle that moves a body part away from the sagittal plane of the body." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0002135 is_a: ZFA:0005277 ! skeletal muscle relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-12-04T01:05:41Z [Term] id: ZFA:0005270 name: depressor muscle namespace: zebrafish_anatomy def: "A muscle that moves body parts into an inferior direction or lowered position. Antagonistic to erector muscle." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005270 is_a: ZFA:0005277 ! skeletal muscle relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-12-04T01:15:51Z [Term] id: ZFA:0005271 name: flexor muscle namespace: zebrafish_anatomy def: "A muscle that decrease the angle of a joint." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005271 is_a: ZFA:0005277 ! skeletal muscle relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2009-12-04T01:20:04Z [Term] id: ZFA:0005272 name: immature gonad namespace: zebrafish_anatomy def: "Immature reproductive tissue that has not undergone final maturation into either testis or ovary. During gonadal development, the gonad may be transiently intersexual where there is a parallel presence of both oocytes and spermatocytes." [ZFIN:ZDB-PUB-070305-2] synonym: "juvenile gonad" EXACT [] synonym: "juvenile ovary" EXACT [ZFIN:ZDB-PUB-070305-2] xref: TAO:0005272 is_a: ZFA:0001488 ! multi-tissue structure relationship: develops_from ZFA:0001262 ! gonad primordium relationship: end ZFS:0000041 ! Larval:Days 21-29 relationship: part_of ZFA:0000632 ! reproductive system relationship: start ZFS:0000040 ! Larval:Days 14-20 created_by: Ceri creation_date: 2009-12-09T11:35:20Z [Term] id: ZFA:0005273 name: intestinal mucosal muscle namespace: zebrafish_anatomy def: "A thin layer of smooth muscle immediately beneath the base of the villi which permits the intestinal mucosa to dynamically move and fold." [ZFIN:ZDB-PUB-090217-11] synonym: "intestinal lamina muscularis mucosae" RELATED [http://www.vivo.colostate.edu/hbooks/pathphys/digestion/basics/gi_microanatomy.html] xref: TAO:0005273 is_a: ZFA:0005274 ! smooth muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001338 ! intestine relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-01-07T01:36:48Z [Term] id: ZFA:0005274 name: smooth muscle namespace: zebrafish_anatomy def: "A non-striated muscle that is composed of spindle-shaped cells. Smooth muscle usually is organized into sheets that line cavitated organs." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005274 is_a: ZFA:0005145 ! muscle relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-01-07T02:57:18Z [Term] id: ZFA:0005275 name: arrector muscle namespace: zebrafish_anatomy xref: TAO:0002147 is_a: ZFA:0005277 ! skeletal muscle relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-01-07T04:50:10Z [Term] id: ZFA:0005276 name: inclinator muscle namespace: zebrafish_anatomy xref: TAO:0005276 is_a: ZFA:0005277 ! skeletal muscle relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-01-07T04:51:38Z [Term] id: ZFA:0005277 name: skeletal muscle namespace: zebrafish_anatomy def: "Muscle, composed of long cylindrical, multinucleated cells that attaches to the skeleton via tendons." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005277 is_a: ZFA:0005145 ! muscle relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-01-07T05:06:51Z [Term] id: ZFA:0005278 name: enteric longitudinal muscle namespace: zebrafish_anatomy def: "Smooth muscle of the enteric muscle system in which the cells are aligned parallel to the lumen of the gut." [GOC:cvs, ORCiD:0000-0002-2244-7917] is_a: ZFA:0005274 ! smooth muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001324 ! enteric musculature relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-01-07T05:48:52Z [Term] id: ZFA:0005279 name: enteric circular muscle namespace: zebrafish_anatomy def: "Smooth muscle of the enteric muscle system in which the cells are aligned perpendicular to the lumen of the gut." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005279 is_a: ZFA:0005274 ! smooth muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001324 ! enteric musculature relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-01-07T05:51:25Z [Term] id: ZFA:0005280 name: cardiac muscle namespace: zebrafish_anatomy def: "Muscle composed of cardiac muscle cells that is part of the heart." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005280 is_a: ZFA:0005145 ! muscle relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-01-07T06:04:03Z [Term] id: ZFA:0005281 name: renal corpuscle namespace: zebrafish_anatomy def: "The part of the nephron that filters blood." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "Malpighian corpuscle" EXACT [] xref: TAO:0005281 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005282 ! nephron relationship: start ZFS:0000039 ! Larval:Days 7-13 created_by: Ceri creation_date: 2010-01-19T01:11:46Z [Term] id: ZFA:0005282 name: nephron namespace: zebrafish_anatomy def: "Functional unit of the kidney that filters waste." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0002153 is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000529 ! kidney relationship: start ZFS:0000039 ! Larval:Days 7-13 created_by: Ceri creation_date: 2010-01-19T02:47:46Z [Term] id: ZFA:0005283 name: renal capsular space namespace: zebrafish_anatomy def: "Space between the renal glomerulus and the glomerular capsule. Renal filtrate collects here then passes into the renal tubule." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "Bowman's space" EXACT [] synonym: "inter-glomerular space" EXACT [] synonym: "urinary space" EXACT [] xref: TAO:0005283 is_a: ZFA:0001643 ! anatomical space relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005281 ! renal corpuscle relationship: start ZFS:0000039 ! Larval:Days 7-13 created_by: Ceri creation_date: 2010-01-19T02:51:01Z [Term] id: ZFA:0005284 name: glomerular capillary namespace: zebrafish_anatomy def: "Capillary that is part of the renal glomerulus. Glomerular capillary endothelial membranes in zebrafish normally have a fenestrated morphology that is visible at the ultrastructural level." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-000824-1] xref: TAO:0005284 is_a: ZFA:0005250 ! capillary relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001288 ! renal glomerulus relationship: part_of ZFA:0005305 ! kidney vasculature relationship: part_of ZFA:0005590 ! capillary loop nephron relationship: start ZFS:0000039 ! Larval:Days 7-13 created_by: Ceri creation_date: 2010-01-19T03:00:45Z [Term] id: ZFA:0005285 name: glomerular basement membrane namespace: zebrafish_anatomy def: "Membrane between the mesonephric podocytes and the renal glomerular capillaries. It is a trilaminar structure composed of the fused basement membranes of the glomerular capillaries and basement membrane of the podocytes. The capillary membranes touch the GBM at contact points that are separated by pores. The membrane is semi-permeable allowing water and small molecules to pass into the renal capsular space." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-000824-1] synonym: "glomerular filtration membrane" EXACT [] xref: TAO:0005285 is_a: ZFA:0001485 ! basal lamina relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001288 ! renal glomerulus relationship: start ZFS:0000039 ! Larval:Days 7-13 created_by: Ceri creation_date: 2010-01-19T03:26:30Z [Term] id: ZFA:0005286 name: lamina densa namespace: zebrafish_anatomy def: "Middle layer of the glomerular basement membrane." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005286 is_a: ZFA:0000382 ! acellular anatomical structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005285 ! glomerular basement membrane relationship: start ZFS:0000039 ! Larval:Days 7-13 created_by: Ceri creation_date: 2010-01-19T03:52:52Z [Term] id: ZFA:0005287 name: lamina rara interna namespace: zebrafish_anatomy def: "Layer of the glomerular basement membrane adjacent to the glomerular capillary." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005287 is_a: ZFA:0000382 ! acellular anatomical structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005285 ! glomerular basement membrane relationship: start ZFS:0000039 ! Larval:Days 7-13 created_by: Ceri creation_date: 2010-01-19T03:56:00Z [Term] id: ZFA:0005288 name: lamina rara externa namespace: zebrafish_anatomy def: "Layer of the glomerular basement membrane adjacent to the podocytes and capsular space." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005288 is_a: ZFA:0000382 ! acellular anatomical structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005285 ! glomerular basement membrane relationship: start ZFS:0000039 ! Larval:Days 7-13 created_by: Ceri creation_date: 2010-01-19T03:56:32Z [Term] id: ZFA:0005289 name: renal duct namespace: zebrafish_anatomy def: "Tubes in the kidney that collect and transport urine." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-071029-9] xref: TAO:0005289 is_a: ZFA:0005171 ! duct relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000529 ! kidney relationship: start ZFS:0000039 ! Larval:Days 7-13 created_by: Ceri creation_date: 2010-01-19T04:36:59Z [Term] id: ZFA:0005290 name: proximal convoluted tubule namespace: zebrafish_anatomy def: "Renal tubule that connects to the renal corpuscle." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005290 is_a: ZFA:0005289 ! renal duct relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001287 ! renal tubule relationship: start ZFS:0000039 ! Larval:Days 7-13 created_by: Ceri creation_date: 2010-01-20T12:39:12Z [Term] id: ZFA:0005291 name: proximal straight tubule namespace: zebrafish_anatomy def: "Portion of the renal tubule which is just posterior to the proximal convoluted tubule." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005291 is_a: ZFA:0005289 ! renal duct relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001287 ! renal tubule relationship: start ZFS:0000039 ! Larval:Days 7-13 created_by: Ceri creation_date: 2010-01-20T12:41:23Z [Term] id: ZFA:0005292 name: distal late tubule namespace: zebrafish_anatomy def: "Portion of the renal tubule which is just posterior to the distal early tubule." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005292 is_a: ZFA:0005289 ! renal duct relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001287 ! renal tubule relationship: start ZFS:0000039 ! Larval:Days 7-13 created_by: Ceri creation_date: 2010-01-20T12:43:22Z [Term] id: ZFA:0005293 name: distal early tubule namespace: zebrafish_anatomy def: "Portion of the renal tubule which is just posterior to the proximal straight tubule." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "distal early tubules" EXACT PLURAL [] xref: TAO:0005293 is_a: ZFA:0005289 ! renal duct relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001287 ! renal tubule relationship: start ZFS:0000039 ! Larval:Days 7-13 created_by: Ceri creation_date: 2010-01-20T12:44:30Z [Term] id: ZFA:0005294 name: collecting duct namespace: zebrafish_anatomy def: "Renal duct that collects the output from renal tubules." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005294 is_a: ZFA:0005289 ! renal duct relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000039 ! Larval:Days 7-13 created_by: Ceri creation_date: 2010-01-20T01:17:47Z [Term] id: ZFA:0005295 name: axial blood vessel namespace: zebrafish_anatomy def: "Blood vessel that runs along the rostral-caudal axis of the fish." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005295 is_a: ZFA:0001073 ! axial vasculature relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-01-20T02:24:10Z [Term] id: ZFA:0005296 name: axial lymph vessel namespace: zebrafish_anatomy def: "Lymph vessel that runs along the rostral-caudal axis of the fish." [GOC:cvs, ORCiD:0000-0002-2244-7917] is_a: ZFA:0001073 ! axial vasculature is_a: ZFA:0005844 ! lymph vessel relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005105 ! lymph vasculature relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-01-20T02:24:34Z [Term] id: ZFA:0005297 name: cranial blood vessel namespace: zebrafish_anatomy def: "Blood vessel part of cranial vasculature." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005297 is_a: ZFA:0005314 ! blood vessel relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001267 ! cranial vasculature relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-01-20T02:25:23Z [Term] id: ZFA:0005298 name: cranial lymph vessel namespace: zebrafish_anatomy def: "Lymph vessel that is located in the head." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005298 is_a: ZFA:0005844 ! lymph vessel relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001267 ! cranial vasculature relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-01-20T02:25:47Z [Term] id: ZFA:0005299 name: fin blood vessel namespace: zebrafish_anatomy def: "Blood vessel part of fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005299 is_a: ZFA:0005314 ! blood vessel relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005095 ! fin vasculature relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-01-20T02:52:39Z [Term] id: ZFA:0005300 name: fin lymph vessel namespace: zebrafish_anatomy def: "Lymph vessel part of fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005300 is_a: ZFA:0005844 ! lymph vessel relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005095 ! fin vasculature relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-01-20T02:53:08Z [Term] id: ZFA:0005301 name: pectoral fin blood vessel namespace: zebrafish_anatomy def: "Blood vessel part of pectoral fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005301 is_a: ZFA:0005299 ! fin blood vessel relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005096 ! pectoral fin vasculature relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-01-20T02:54:07Z [Term] id: ZFA:0005302 name: pectoral fin lymph vessel namespace: zebrafish_anatomy def: "Lymph vessel part of pectoral fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005302 is_a: ZFA:0005300 ! fin lymph vessel relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005096 ! pectoral fin vasculature relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-01-20T02:54:43Z [Term] id: ZFA:0005303 name: caudal fin lymph vessel namespace: zebrafish_anatomy def: "Lymph vessel that is located in the caudal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005303 is_a: ZFA:0005300 ! fin lymph vessel relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005097 ! caudal fin vasculature relationship: part_of ZFA:0005105 ! lymph vasculature relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-01-20T02:55:44Z [Term] id: ZFA:0005304 name: caudal fin blood vessel namespace: zebrafish_anatomy def: "Blood vessel located within the caudal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005304 is_a: ZFA:0005299 ! fin blood vessel relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005097 ! caudal fin vasculature relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-01-20T02:55:49Z [Term] id: ZFA:0005305 name: kidney vasculature namespace: zebrafish_anatomy def: "Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the kidney." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005305 is_a: ZFA:0005249 ! vasculature relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000529 ! kidney relationship: start ZFS:0000037 ! Larval:Day 5 created_by: Ceri creation_date: 2010-01-20T03:02:06Z [Term] id: ZFA:0005306 name: kidney blood vessel namespace: zebrafish_anatomy def: "Blood vessel part of kidney." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005306 is_a: ZFA:0005314 ! blood vessel relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005305 ! kidney vasculature relationship: start ZFS:0000037 ! Larval:Day 5 created_by: Ceri creation_date: 2010-01-20T03:02:27Z [Term] id: ZFA:0005307 name: afferent glomerular arteriole namespace: zebrafish_anatomy def: "Arteriole that carries blood into the glomerular capillaries." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0002139 is_a: ZFA:0005255 ! arteriole relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005281 ! renal corpuscle relationship: part_of ZFA:0005305 ! kidney vasculature relationship: start ZFS:0000039 ! Larval:Days 7-13 created_by: Ceri creation_date: 2010-01-20T03:02:56Z [Term] id: ZFA:0005308 name: efferent glomerular arteriole namespace: zebrafish_anatomy def: "Arteriole that carries blood out of the glomerular capillaries." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0002140 is_a: ZFA:0005255 ! arteriole relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005281 ! renal corpuscle relationship: part_of ZFA:0005305 ! kidney vasculature relationship: start ZFS:0000039 ! Larval:Days 7-13 created_by: Ceri creation_date: 2010-01-20T03:05:49Z [Term] id: ZFA:0005309 name: pronephric glomerular capillary namespace: zebrafish_anatomy def: "Capillary that is part of the pronephric glomerulus. Glomerular capillary endothelial membranes in zebrafish normally have a fenestrated morphology that is visible at the ultrastructural level." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-000824-1] xref: TAO:0005309 is_a: ZFA:0005250 ! capillary relationship: end ZFS:0000039 ! Larval:Days 7-13 relationship: part_of ZFA:0001557 ! pronephric glomerulus relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-01-29T11:29:44Z [Term] id: ZFA:0005310 name: pronephric glomerular capsule namespace: zebrafish_anatomy def: "Portion of tissue that encapsulates the glomerulus of the pronephros." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] synonym: "Bowman's capsule " EXACT [] xref: TAO:0005310 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000039 ! Larval:Days 7-13 relationship: part_of ZFA:0000151 ! pronephros relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-01-29T11:39:01Z [Term] id: ZFA:0005311 name: pronephric glomerular capsule epithelium namespace: zebrafish_anatomy def: "Simple squamous epithelium that lines the capsule of the pronephric glomerulus." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "pronephric parietal epithelial layer" EXACT [] xref: TAO:0005311 is_a: ZFA:0001498 ! simple squamous epithelium relationship: end ZFS:0000039 ! Larval:Days 7-13 relationship: part_of ZFA:0005310 ! pronephric glomerular capsule relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-01-29T11:40:01Z [Term] id: ZFA:0005312 name: pronephric capsular space namespace: zebrafish_anatomy def: "Space between the pronephric glomerulus and the pronephric glomerular capsule. Renal filtrate collects here then passes into the pronephric tubule." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "Bowman's space" EXACT [] synonym: "inter-glomerular space" EXACT [] synonym: "urinary space" EXACT [] xref: TAO:0005312 is_a: ZFA:0001643 ! anatomical space relationship: end ZFS:0000039 ! Larval:Days 7-13 relationship: part_of ZFA:0000151 ! pronephros relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-01-29T11:41:05Z [Term] id: ZFA:0005313 name: pronephric glomerular basement membrane namespace: zebrafish_anatomy def: "Membrane between the pronephric podocytes and the pronephric glomerular capillaries. It is a trilaminar structure composed of the fused basement membranes of the glomerular capillaries and basement membrane of the podocytes. The capillary membranes touch the GBM at contact points that are separated by pores. The membrane is semi-permeable allowing water and small molecules to pass into the renal capsular space." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-000824-1] synonym: "pronephric glomerular filtration membrane" EXACT [] xref: TAO:0005313 is_a: ZFA:0001485 ! basal lamina relationship: end ZFS:0000039 ! Larval:Days 7-13 relationship: part_of ZFA:0001557 ! pronephric glomerulus relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-01-29T11:59:03Z [Term] id: ZFA:0005314 name: blood vessel namespace: zebrafish_anatomy def: "Any of the tubular multi-tissue structures through which blood circulates in the body." [vHOG:curator] xref: TAO:0002137 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001079 ! blood vasculature relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-01-29T02:17:51Z [Term] id: ZFA:0005315 name: venule namespace: zebrafish_anatomy def: "Multi-tissue structure part of the blood vasculature formed by the anastomosis of capillaries. Venules carry blood toward the heart." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005315 is_a: ZFA:0005314 ! blood vessel relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001079 ! blood vasculature relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-01-29T03:29:15Z [Term] id: ZFA:0005316 name: fin fold pectoral fin bud namespace: zebrafish_anatomy def: "Fin fold of the pectoral fin bud, resulting from mesenchyme migration into the apical fold." [ZFIN:ZDB-PUB-001101-7, ZFIN:ZDB-PUB-990210-18] synonym: "fin membrane pectoral fin bud" RELATED [] xref: TAO:0005316 is_a: ZFA:0001488 ! multi-tissue structure relationship: develops_from ZFA:0000085 ! apical ectodermal ridge pectoral fin bud relationship: end ZFS:0000033 ! Hatching:Long-pec relationship: part_of ZFA:0000141 ! pectoral fin bud relationship: start ZFS:0000033 ! Hatching:Long-pec created_by: Ceri creation_date: 2010-02-10T02:37:39Z [Term] id: ZFA:0005317 name: pectoral fin fold namespace: zebrafish_anatomy def: "The functional webs of the paired fins. They arise as a consequence of apical fold (AER) expansion and of migration of the distal mesenchyme. The fin folds are delimited by a dorsal and a ventral striated epidermis. The cells of the epidermal basal stratum are positioned on a basement membrane. Directly beneath the basement membrane of each side there is an array of actinotrichs, fibers of the extracellular matrix which act as supportive elements of the larval fin folds." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-990210-18] synonym: "pectoral fin membrane" EXACT [] xref: TAO:0005317 is_a: ZFA:0001488 ! multi-tissue structure relationship: develops_from ZFA:0005316 ! fin fold pectoral fin bud relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001161 ! pectoral fin relationship: start ZFS:0000034 ! Hatching:Pec-fin created_by: Ceri creation_date: 2010-02-10T03:27:29Z [Term] id: ZFA:0005318 name: lymph node namespace: zebrafish_anatomy comment: Does not exist in teleosts. Menke, A.L., Spitsbergen, J.M., Wolterbeek, A.P., and Woutersen, R.A. (2011) Normal Anatomy and Histology of the Adult Zebrafish. Toxicol. Pathol. 39(5): 759-775. xref: TAO:0005318 is_obsolete: true created_by: Ceri creation_date: 2010-02-10T03:44:48Z [Term] id: ZFA:0005319 name: intersegmental lymph vessel namespace: zebrafish_anatomy def: "Lymph vessel that is located between the somites." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "islv" EXACT [] xref: TAO:0005319 is_a: ZFA:0005105 ! lymph vasculature relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000035 ! Larval:Protruding-mouth created_by: Ceri creation_date: 2010-02-10T05:28:00Z [Term] id: ZFA:0005320 name: dorsal longitudinal lymphatic vessel namespace: zebrafish_anatomy synonym: "dllv" EXACT [] xref: TAO:0005320 is_a: ZFA:0005296 ! axial lymph vessel relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000035 ! Larval:Protruding-mouth created_by: Ceri creation_date: 2010-02-10T05:29:42Z [Term] id: ZFA:0005321 name: vascular smooth muscle namespace: zebrafish_anatomy def: "Smooth muscle that is part of the blood vessel wall." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-060216-3] xref: TAO:0005321 is_a: ZFA:0005274 ! smooth muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005314 ! blood vessel relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-02-10T05:39:30Z [Term] id: ZFA:0005322 name: renal principal cell namespace: zebrafish_anatomy alt_id: ZFA:0009373 def: "A cuboidal epithelial cell of the kidney which regulates sodium and potassium balance. The activity of sodium and potassium channels on the cells apical membrane is regulated by aldosterone and vasopressin. In mammals these cells are located in the renal collecting ducts." [GOC:cvs, ORCiD:0000-0002-2244-7917] subset: cell_slim xref: CL:0005009 xref: TAO:0005322 is_a: ZFA:0009038 ! columnar/cuboidal epithelial cell is_a: ZFA:0009374 ! kidney epithelial cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001287 ! renal tubule relationship: start ZFS:0000039 ! Larval:Days 7-13 created_by: Ceri creation_date: 2010-02-10T06:32:34Z [Term] id: ZFA:0005323 name: ionocyte namespace: zebrafish_anatomy def: "Specialized epithelial cells involved in the maintenance of osmotic homeostasis. They are characterized by abundant mitochondria and ion transporters. In amniotes, they are present in the renal system. In freshwater fish, ionocytes in the skin and gills help maintain osmotic homeostasis by absorbing salt from the external environment." [ZFIN:ZDB-PUB-070625-18, ZFIN:ZDB-PUB-090310-19] subset: cell_slim xref: CL:0005006 xref: TAO:0005323 is_a: ZFA:0009034 ! epithelial cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-02-22T01:18:18Z [Term] id: ZFA:0005324 name: gill ionocyte namespace: zebrafish_anatomy def: "Ionocyte located in the gills." [GOC:cvs, ORCiD:0000-0002-2244-7917] subset: cell_slim xref: TAO:0005324 is_a: ZFA:0005323 ! ionocyte relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000354 ! gill relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-02-22T01:22:16Z [Term] id: ZFA:0005325 name: integument ionocyte namespace: zebrafish_anatomy def: "Ionocyte located in the integument during embryonic and larval stages." [GOC:cvs, ORCiD:0000-0002-2244-7917] subset: cell_slim synonym: "extrabranchial ionocyte" RELATED [] synonym: "skin ionocyte" EXACT [] xref: TAO:0005325 is_a: ZFA:0005323 ! ionocyte relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000368 ! integument relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-02-22T02:13:14Z [Term] id: ZFA:0005326 name: NaK ionocyte namespace: zebrafish_anatomy def: "Integument ionocyte rich in Na,K-ATPase." [GOC:cvs, ORCiD:0000-0002-2244-7917] subset: cell_slim synonym: "NaK-MRC" RELATED [] synonym: "NaR cell" RELATED [] xref: TAO:0005326 is_a: ZFA:0005325 ! integument ionocyte relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000368 ! integument relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-02-22T02:29:17Z [Term] id: ZFA:0005327 name: vH ionocyte namespace: zebrafish_anatomy def: "Integument ionocyte rich in vacuolar-type H+ ATPase and carbonic anhydrase." [GOC:cvs, ORCiD:0000-0002-2244-7917] subset: cell_slim synonym: "HR cell" RELATED [] synonym: "VH-MRC" RELATED [] xref: TAO:0005327 is_a: ZFA:0005325 ! integument ionocyte relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000368 ! integument relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-02-22T02:32:20Z [Term] id: ZFA:0005328 name: iridoblast namespace: zebrafish_anatomy def: "A non-terminally differentiated cell that originates from the neural crest and differentiates into an iridophore." [CL:curator] subset: cell_slim xref: CL:0005001 xref: TAO:0005328 is_a: ZFA:0009000 ! cell relationship: develops_from ZFA:0009165 ! neural crest cell relationship: end ZFS:0000032 ! Pharyngula:High-pec relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-02-22T03:51:51Z [Term] id: ZFA:0005329 name: leucoblast namespace: zebrafish_anatomy def: "A non-terminally differentiated cell that originates from the neural crest and differentiates into a leucophore." [CL:curator] subset: cell_slim xref: CL:0005003 xref: TAO:0005329 is_a: ZFA:0009000 ! cell relationship: develops_from ZFA:0009165 ! neural crest cell relationship: end ZFS:0000032 ! Pharyngula:High-pec relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-02-22T03:51:51Z [Term] id: ZFA:0005331 name: pigment erythroblast namespace: zebrafish_anatomy def: "A non-terminally differentiated cell that originates from the neural crest and differentiates into an erythrophore." [CL:curator] subset: cell_slim xref: CL:0005004 xref: TAO:0005331 is_a: ZFA:0009000 ! cell relationship: develops_from ZFA:0009165 ! neural crest cell relationship: end ZFS:0000032 ! Pharyngula:High-pec relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-02-22T03:51:51Z [Term] id: ZFA:0005332 name: cyanoblast namespace: zebrafish_anatomy def: "A non-terminally differentiated cell that originates from the neural crest and differentiates into a cyanophore." [CL:curator] subset: cell_slim xref: CL:0005005 xref: TAO:0005332 is_a: ZFA:0009000 ! cell relationship: develops_from ZFA:0009165 ! neural crest cell relationship: end ZFS:0000032 ! Pharyngula:High-pec relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-02-22T03:51:51Z [Term] id: ZFA:0005333 name: tongue namespace: zebrafish_anatomy def: "A multi-tissue mediosagittal cylinder-shaped structure, clearly isolated from the jaw and adhered by differentiated plicae to the lateral walls. It is composed of a muscle surrounded by a squamous epithelium." [ZFIN:ZDB-PUB-060921-12, ZFIN:ZDB-PUB-091204-24] xref: TAO:0005333 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000547 ! mouth relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-03-18T03:04:28Z [Term] id: ZFA:0005334 name: lip epithelium namespace: zebrafish_anatomy def: "The thick, high squamous-stratified epithelium that covers the lips. It contains abundant melanocytes, many mucous cells and has well differentiated taste buds." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-060921-12] xref: TAO:0005334 is_a: ZFA:0001486 ! epithelium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0007006 ! lip relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-03-18T03:12:14Z [Term] id: ZFA:0005335 name: swim bladder bud namespace: zebrafish_anatomy def: "Embryonic structure that forms from the anterior gut epithelium at the level of the second somite that then matures to form the swim bladder." [ZFIN:ZDB-PUB-090511-18, ZFIN:ZDB-PUB-100202-11] xref: TAO:0005335 is_a: ZFA:0001105 ! embryonic structure relationship: develops_from ZFA:0005336 ! presumptive swim bladder relationship: end ZFS:0000033 ! Hatching:Long-pec relationship: start ZFS:0000031 ! Pharyngula:Prim-25 created_by: Ceri creation_date: 2010-03-18T03:59:33Z [Term] id: ZFA:0005336 name: presumptive swim bladder namespace: zebrafish_anatomy def: "Portion of the gut endoderm that will eventually develop into the swim bladder." [ZFIN:ZDB-PUB-090511-18] synonym: "swim bladder anlage" RELATED [ZFIN:ZDB-PUB-100202-11] xref: TAO:0005336 is_a: ZFA:0001116 ! presumptive structure relationship: develops_from ZFA:0005737 ! intestinal rod relationship: end ZFS:0000030 ! Pharyngula:Prim-15 relationship: part_of ZFA:0000112 ! gut relationship: start ZFS:0000029 ! Pharyngula:Prim-5 created_by: Ceri creation_date: 2010-03-18T04:20:42Z [Term] id: ZFA:0005337 name: anterior swim bladder bud namespace: zebrafish_anatomy def: "Portion of tissue that forms from the swim bladder epithelium at the anterior end of the swim bladder." [ZFIN:ZDB-PUB-090511-18] xref: TAO:0002145 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0000076 ! swim bladder relationship: end ZFS:0000040 ! Larval:Days 14-20 relationship: start ZFS:0000034 ! Hatching:Pec-fin created_by: Ceri creation_date: 2010-03-18T04:28:20Z [Term] id: ZFA:0005338 name: posterior recess namespace: zebrafish_anatomy def: "Posterior protrusion of the third ventricle." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] synonym: "posterior recess of diencephalic ventricle" EXACT [ZFIN:ZDB-PUB-091221-27] synonym: "recessus posterior " EXACT [ZFIN:ZDB-PUB-961014-1280] xref: TAO:0005338 is_a: ZFA:0001643 ! anatomical space relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000161 ! third ventricle relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-03-18T05:40:53Z [Term] id: ZFA:0005339 name: nucleus of the lateral recess namespace: zebrafish_anatomy def: "Is a diencephalic nucleus located in the caudal periventricular hypothalamus surrounding the lateral recess of the third ventricle." [ZFIN:ZDB-PUB-091221-27] xref: TAO:0005339 is_a: ZFA:0001659 ! diencephalic nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000324 ! caudal periventricular hypothalamus relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-03-18T05:52:56Z [Term] id: ZFA:0005340 name: nucleus of the posterior recess namespace: zebrafish_anatomy def: "A diencephalic nucleus that is part of caudal periventricular hypothalmus surrounding the posterior recess of the third ventricle." [ZFIN:ZDB-PUB-091221-27] xref: TAO:0005340 is_a: ZFA:0001659 ! diencephalic nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000324 ! caudal periventricular hypothalamus relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-03-18T05:59:24Z [Term] id: ZFA:0005341 name: medial longitudinal catecholaminergic tract namespace: zebrafish_anatomy def: "CNS white matter tract, major catecholaminergic tract that originates in the diencephalon, passes the locus coeruleus and projects through the hindbrain into the spinal cord. Dopaminergic neurons of the posterior tuberculum and lateral hypothalamus provide the predominant contribution to descending mlct projections." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-091221-28] synonym: "medial longitudinal CA tract" EXACT [ZFIN:ZDB-PUB-091221-28] synonym: "mlct" EXACT [] xref: TAO:0005341 is_a: ZFA:0001682 ! white matter relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-03-18T06:07:36Z [Term] id: ZFA:0005342 name: anterior catecholaminergic tract namespace: zebrafish_anatomy def: "CNS white matter, an axonal tract between ventral diencephalon and ventral telencephalon. At 3 d, the anterior catecholaminergic tract includes noradrenergic projections from the hindbrain and dopaminergic projections from ventral dopaminergic neurons. During later development, other catecholaminergic projections may also contribute to the anterior catecholaminergic tract." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-091221-28] xref: TAO:0002144 is_a: ZFA:0001682 ! white matter relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-03-18T06:11:28Z [Term] id: ZFA:0005343 name: endohypothalamic tract namespace: zebrafish_anatomy def: "CNS white matter, axonal tract interconnecting catecholaminergic cell groups in the posterior tuberculum and hypothalamus." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-091221-28] xref: TAO:0005343 is_a: ZFA:0001682 ! white matter relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-03-18T06:13:25Z [Term] id: ZFA:0005344 name: preopticohypothalamic tract namespace: zebrafish_anatomy def: "CNS white matter, axonal tract between the preoptic region and ventral diencephalon." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-091221-28] xref: TAO:0005344 is_a: ZFA:0001682 ! white matter relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-03-18T06:14:28Z [Term] id: ZFA:0005345 name: adipose tissue namespace: zebrafish_anatomy def: "Connective tissue in which fat is stored. All adipose tissue in the zebrafish is white adipose tissue and is comprised of adipocytes, stroma, macrophages and vasculature. Mature adipocytes express adipokines, such as adipsin, adiponectin, and leptin so white adipose tissue is considered an endocrine organ. The connective tissue is loose and infiltrated by a vascular network." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-101011-51] synonym: "white adipose tissue" EXACT [] xref: TAO:0002134 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-03-19T10:04:38Z [Term] id: ZFA:0005346 name: extrapancreatic duct namespace: zebrafish_anatomy def: "Portion of the pancreatic duct, external to the pancreas body that connects the pancreas with the hepatopancreatic ampulla." [ZFIN:ZDB-PUB-050623-3] xref: TAO:0005346 is_a: ZFA:0005162 ! digestive system duct relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001372 ! pancreatic duct relationship: start ZFS:0000031 ! Pharyngula:Prim-25 created_by: Ceri creation_date: 2010-03-19T03:17:51Z [Term] id: ZFA:0005347 name: vertebra 5 namespace: zebrafish_anatomy def: "Vertebra that is posteriorly adjacent to vertebra 4." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] xref: TAO:0001732 is_a: ZFA:0001582 ! non-Weberian precaudal vertebra relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-04-21T04:13:30Z [Term] id: ZFA:0005348 name: vertebra 6 namespace: zebrafish_anatomy def: "Vertebra that is posteriorly adjacent to vertebra 5." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] xref: TAO:0001980 is_a: ZFA:0001582 ! non-Weberian precaudal vertebra relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-04-21T04:31:28Z [Term] id: ZFA:0005349 name: vertebra 7 namespace: zebrafish_anatomy def: "Vertebra that is posteriorly adjacent to vertebra 6." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] xref: TAO:0001981 is_a: ZFA:0001582 ! non-Weberian precaudal vertebra relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-04-21T04:31:47Z [Term] id: ZFA:0005350 name: vertebra 8 namespace: zebrafish_anatomy def: "Vertebra that is posteriorly adjacent to vertebra 7." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] xref: TAO:0001982 is_a: ZFA:0001582 ! non-Weberian precaudal vertebra relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-04-21T04:32:12Z [Term] id: ZFA:0005351 name: vertebra 9 namespace: zebrafish_anatomy def: "Vertebra that is posteriorly adjacent to vertebra 8." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] xref: TAO:0002149 is_a: ZFA:0001582 ! non-Weberian precaudal vertebra relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-04-21T04:32:37Z [Term] id: ZFA:0005352 name: vertebra 12 namespace: zebrafish_anatomy def: "Vertebra that is posteriorly adjacent to vertebra 11. May have hemal arch and rib." [ZFIN:ZDB-PUB-020807-1] xref: TAO:0002152 is_a: ZFA:0001582 ! non-Weberian precaudal vertebra relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-04-21T04:33:09Z [Term] id: ZFA:0005353 name: vertebra 10 namespace: zebrafish_anatomy def: "Vertebra that is posteriorly adjacent to vertebra 9." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] xref: TAO:0002150 is_a: ZFA:0001582 ! non-Weberian precaudal vertebra relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-04-21T04:33:57Z [Term] id: ZFA:0005354 name: vertebra 11 namespace: zebrafish_anatomy def: "Vertebra that is posteriorly adjacent to vertebra 10." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] xref: TAO:0002151 is_a: ZFA:0001582 ! non-Weberian precaudal vertebra relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-04-21T04:34:16Z [Term] id: ZFA:0005355 name: dorsal fin lepidotrichium 1 namespace: zebrafish_anatomy def: "First lepidotrichium of dorsal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "dorsal fin ray 1 " EXACT [] xref: TAO:0001754 is_a: ZFA:0001418 ! dorsal fin lepidotrichium relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-04-22T05:26:13Z [Term] id: ZFA:0005356 name: dorsal fin lepidotrichium 2 namespace: zebrafish_anatomy def: "Second lepidotrichium of dorsal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "dorsal fin ray 2" EXACT [] xref: TAO:0001755 is_a: ZFA:0001418 ! dorsal fin lepidotrichium relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-04-22T05:28:14Z [Term] id: ZFA:0005357 name: dorsal fin lepidotrichium 3 namespace: zebrafish_anatomy def: "Third lepidotrichium of dorsal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "dorsal fin ray 3" EXACT [] xref: TAO:0001756 is_a: ZFA:0001418 ! dorsal fin lepidotrichium relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-04-22T05:28:28Z [Term] id: ZFA:0005358 name: dorsal fin lepidotrichium 4 namespace: zebrafish_anatomy def: "Fourth lepidotrichium of dorsal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "dorsal fin ray 4" EXACT [] xref: TAO:0001757 is_a: ZFA:0001418 ! dorsal fin lepidotrichium relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-04-22T05:29:09Z [Term] id: ZFA:0005359 name: dorsal fin lepidotrichium 5 namespace: zebrafish_anatomy def: "Fifth lepidotrichium of dorsal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "dorsal fin ray 5" EXACT [] xref: TAO:0001758 is_a: ZFA:0001418 ! dorsal fin lepidotrichium relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-04-22T05:29:18Z [Term] id: ZFA:0005360 name: dorsal fin lepidotrichium 6 namespace: zebrafish_anatomy def: "Sixth lepidotrichium of dorsal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "dorsal fin ray 6" EXACT [] xref: TAO:0001759 is_a: ZFA:0001418 ! dorsal fin lepidotrichium relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-04-22T05:29:33Z [Term] id: ZFA:0005361 name: dorsal fin lepidotrichium 7 namespace: zebrafish_anatomy def: "Seventh lepidotrichium of dorsal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "dorsal fin ray 7" EXACT [] xref: TAO:0001760 is_a: ZFA:0001418 ! dorsal fin lepidotrichium relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-04-22T05:29:52Z [Term] id: ZFA:0005362 name: dorsal fin proximal radial 1 namespace: zebrafish_anatomy def: "First proximal radial of the dorsal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0001818 is_a: ZFA:0000947 ! dorsal fin proximal radial relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005364 ! dorsal fin pterygiophore 1 relationship: start ZFS:0000039 ! Larval:Days 7-13 created_by: Ceri creation_date: 2010-04-22T05:39:57Z [Term] id: ZFA:0005363 name: dorsal fin proximal radial 2 namespace: zebrafish_anatomy def: "Second proximal radial of the dorsal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0001819 is_a: ZFA:0000947 ! dorsal fin proximal radial relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005365 ! dorsal fin pterygiophore 2 relationship: start ZFS:0000039 ! Larval:Days 7-13 created_by: Ceri creation_date: 2010-04-22T05:40:13Z [Term] id: ZFA:0005364 name: dorsal fin pterygiophore 1 namespace: zebrafish_anatomy def: "Dorsal fin pterygiophore that is the rostralmost pterygiophore of the dorsal fin." [TAO:curator] synonym: "dorsal fin radial 1" EXACT [] xref: TAO:0002094 is_a: ZFA:0001419 ! dorsal fin pterygiophore relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000039 ! Larval:Days 7-13 created_by: Ceri creation_date: 2010-04-22T05:47:57Z [Term] id: ZFA:0005365 name: dorsal fin pterygiophore 2 namespace: zebrafish_anatomy def: "Dorsal fin pterygiophore that is caudal to pterygiophore 1 of the dorsal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "dorsal fin radial 2" EXACT [] xref: TAO:0005365 is_a: ZFA:0001419 ! dorsal fin pterygiophore relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000039 ! Larval:Days 7-13 created_by: Ceri creation_date: 2010-04-22T05:48:12Z [Term] id: ZFA:0005366 name: dorsal fin pterygiophore 3 namespace: zebrafish_anatomy def: "Dorsal fin pterygiophore that is caudal to pterygiophore 2 of the dorsal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-031103-13] synonym: "dorsal fin radial 3" EXACT [] xref: TAO:0005366 is_a: ZFA:0001419 ! dorsal fin pterygiophore relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000039 ! Larval:Days 7-13 created_by: Ceri creation_date: 2010-04-22T05:48:36Z [Term] id: ZFA:0005367 name: dorsal fin pterygiophore 4 namespace: zebrafish_anatomy def: "Dorsal fin pterygiophore that is caudal to pterygiophore 3 of the dorsal fin. One of the two first radials to ossify." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-031103-13] synonym: "dorsal fin radial 4" EXACT [] xref: TAO:0005367 is_a: ZFA:0001419 ! dorsal fin pterygiophore relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000039 ! Larval:Days 7-13 created_by: Ceri creation_date: 2010-04-22T05:48:48Z [Term] id: ZFA:0005368 name: dorsal fin pterygiophore 5 namespace: zebrafish_anatomy def: "Dorsal fin pterygiophore that is caudal to pterygiophore 4 of the dorsal fin. One of the two first radials to ossify." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-031103-13] synonym: "dorsal fin radial 5" EXACT [] xref: TAO:0005368 is_a: ZFA:0001419 ! dorsal fin pterygiophore relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000039 ! Larval:Days 7-13 created_by: Ceri creation_date: 2010-04-22T05:49:00Z [Term] id: ZFA:0005369 name: dorsal fin pterygiophore 6 namespace: zebrafish_anatomy def: "Dorsal fin pterygiophore that is caudal to pterygiophore 5 of the dorsal fin." [ZFIN:ZDB-PUB-031103-13] synonym: "dorsal fin radial 6" EXACT [] xref: TAO:0005369 is_a: ZFA:0001419 ! dorsal fin pterygiophore relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000039 ! Larval:Days 7-13 created_by: Ceri creation_date: 2010-04-22T05:49:26Z [Term] id: ZFA:0005370 name: dorsal fin pterygiophore 7 namespace: zebrafish_anatomy def: "Dorsal fin pterygiophore that is caudal to pterygiophore 6 of the dorsal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-031103-13] synonym: "dorsal fin radial 7" EXACT [] xref: TAO:0005370 is_a: ZFA:0001419 ! dorsal fin pterygiophore relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000039 ! Larval:Days 7-13 created_by: Ceri creation_date: 2010-04-22T05:49:39Z [Term] id: ZFA:0005371 name: dorsal fin pterygiophore 8 namespace: zebrafish_anatomy def: "Dorsal fin pterygiophore that is caudal to pterygiophore 7 of the dorsal fin. The most caudal pterygiophore of the dorsal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-031103-13] synonym: "dorsal fin radial 8" EXACT [] xref: TAO:0005371 is_a: ZFA:0001419 ! dorsal fin pterygiophore relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000039 ! Larval:Days 7-13 created_by: Ceri creation_date: 2010-04-22T05:53:09Z [Term] id: ZFA:0005372 name: dorsal fin distal radial 1 namespace: zebrafish_anatomy def: "First distal radial of the dorsal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005372 is_a: ZFA:0000936 ! dorsal fin distal radial relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005364 ! dorsal fin pterygiophore 1 relationship: start ZFS:0000039 ! Larval:Days 7-13 created_by: Ceri creation_date: 2010-04-22T05:54:49Z [Term] id: ZFA:0005373 name: dorsal fin distal radial 2 namespace: zebrafish_anatomy def: "Second distal radial of the dorsal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005373 is_a: ZFA:0000936 ! dorsal fin distal radial relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005365 ! dorsal fin pterygiophore 2 relationship: start ZFS:0000039 ! Larval:Days 7-13 created_by: Ceri creation_date: 2010-04-22T05:55:31Z [Term] id: ZFA:0005374 name: dorsal fin distal radial 3 namespace: zebrafish_anatomy def: "Third distal radial of the dorsal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005374 is_a: ZFA:0000936 ! dorsal fin distal radial relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005366 ! dorsal fin pterygiophore 3 relationship: start ZFS:0000039 ! Larval:Days 7-13 created_by: Ceri creation_date: 2010-04-22T05:57:11Z [Term] id: ZFA:0005375 name: dorsal fin distal radial 4 namespace: zebrafish_anatomy def: "Fourth distal radial of the dorsal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005375 is_a: ZFA:0000936 ! dorsal fin distal radial relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005367 ! dorsal fin pterygiophore 4 relationship: start ZFS:0000039 ! Larval:Days 7-13 created_by: Ceri creation_date: 2010-04-22T05:57:21Z [Term] id: ZFA:0005376 name: dorsal fin distal radial 5 namespace: zebrafish_anatomy def: "Fifth distal radial of the dorsal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005376 is_a: ZFA:0000936 ! dorsal fin distal radial relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005368 ! dorsal fin pterygiophore 5 relationship: start ZFS:0000039 ! Larval:Days 7-13 created_by: Ceri creation_date: 2010-04-22T05:57:32Z [Term] id: ZFA:0005377 name: dorsal fin distal radial 6 namespace: zebrafish_anatomy def: "Sixth distal radial of the dorsal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005377 is_a: ZFA:0000936 ! dorsal fin distal radial relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005369 ! dorsal fin pterygiophore 6 relationship: start ZFS:0000039 ! Larval:Days 7-13 created_by: Ceri creation_date: 2010-04-22T05:57:48Z [Term] id: ZFA:0005378 name: dorsal fin distal radial 7 namespace: zebrafish_anatomy def: "Seventh distal radial of the dorsal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005378 is_a: ZFA:0000936 ! dorsal fin distal radial relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005370 ! dorsal fin pterygiophore 7 relationship: start ZFS:0000039 ! Larval:Days 7-13 created_by: Ceri creation_date: 2010-04-22T05:58:04Z [Term] id: ZFA:0005379 name: dorsal fin distal radial 8 namespace: zebrafish_anatomy def: "Eighth distal radial of the dorsal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005379 is_a: ZFA:0000936 ! dorsal fin distal radial relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005371 ! dorsal fin pterygiophore 8 relationship: start ZFS:0000039 ! Larval:Days 7-13 created_by: Ceri creation_date: 2010-04-22T05:58:19Z [Term] id: ZFA:0005380 name: dorsal fin proximal radial 3 namespace: zebrafish_anatomy def: "Third proximal radial of the dorsal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005380 is_a: ZFA:0000947 ! dorsal fin proximal radial relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005366 ! dorsal fin pterygiophore 3 relationship: start ZFS:0000039 ! Larval:Days 7-13 created_by: Ceri creation_date: 2010-04-22T05:58:39Z [Term] id: ZFA:0005381 name: dorsal fin proximal radial 4 namespace: zebrafish_anatomy def: "Fourth proximal radial of the dorsal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005381 is_a: ZFA:0000947 ! dorsal fin proximal radial relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005367 ! dorsal fin pterygiophore 4 relationship: start ZFS:0000039 ! Larval:Days 7-13 created_by: Ceri creation_date: 2010-04-22T05:59:08Z [Term] id: ZFA:0005382 name: dorsal fin proximal radial 5 namespace: zebrafish_anatomy def: "Fifth proximal radial of the dorsal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005382 is_a: ZFA:0000947 ! dorsal fin proximal radial relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005368 ! dorsal fin pterygiophore 5 relationship: start ZFS:0000039 ! Larval:Days 7-13 created_by: Ceri creation_date: 2010-04-22T05:59:20Z [Term] id: ZFA:0005383 name: dorsal fin proximal radial 6 namespace: zebrafish_anatomy def: "Sixth proximal radial of the dorsal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005383 is_a: ZFA:0000947 ! dorsal fin proximal radial relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005369 ! dorsal fin pterygiophore 6 relationship: start ZFS:0000039 ! Larval:Days 7-13 created_by: Ceri creation_date: 2010-04-22T05:59:30Z [Term] id: ZFA:0005384 name: dorsal fin proximal radial 7 namespace: zebrafish_anatomy def: "Seventh proximal radial of the dorsal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005384 is_a: ZFA:0000947 ! dorsal fin proximal radial relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005370 ! dorsal fin pterygiophore 7 relationship: start ZFS:0000039 ! Larval:Days 7-13 created_by: Ceri creation_date: 2010-04-22T05:59:42Z [Term] id: ZFA:0005385 name: dorsal fin proximal radial 8 namespace: zebrafish_anatomy def: "Eighth proximal radial of the dorsal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005385 is_a: ZFA:0000947 ! dorsal fin proximal radial relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005371 ! dorsal fin pterygiophore 8 relationship: start ZFS:0000039 ! Larval:Days 7-13 created_by: Ceri creation_date: 2010-04-22T05:59:54Z [Term] id: ZFA:0005386 name: foramen namespace: zebrafish_anatomy def: "Anatomical space that is an opening in a bone, usually for passage of blood vessels or nerves." [TAO:curator] synonym: "foramina" EXACT PLURAL [] xref: TAO:0001736 is_a: ZFA:0001643 ! anatomical space relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-04-23T11:01:27Z [Term] id: ZFA:0005387 name: foramen magnum namespace: zebrafish_anatomy def: "Foramen in the occipital region of neurocranium to allow passage of spinal cord." [TAO:curator] xref: TAO:0002045 is_a: ZFA:0005386 ! foramen relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-04-23T11:02:49Z [Term] id: ZFA:0005388 name: fossa namespace: zebrafish_anatomy def: "Anatomical space that is a concavity, shallow depression, or groove on a bone." [TAO:curator] xref: TAO:0001743 is_a: ZFA:0001643 ! anatomical space relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-04-23T11:04:59Z [Term] id: ZFA:0005389 name: gill opening namespace: zebrafish_anatomy def: "Anatomical space that is the external opening of a gill slit connecting the pharyngeal cavity to the exterior. Gill opening is usually paired and located on the lateral or ventral surfaces of the head." [TAO:curator] xref: TAO:0002057 is_a: ZFA:0001643 ! anatomical space relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-04-23T11:06:34Z [Term] id: ZFA:0005390 name: gill ray namespace: zebrafish_anatomy def: "Gill ray is a slender, usually rod-like cartilage within a gill filament and ligamentously tied to its associated pharyngeal arch bone or cartilage." [TAO:curator] xref: TAO:0001856 is_a: ZFA:0001460 ! pharyngeal arch cartilage relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001613 ! pharyngeal arch 3-7 relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-04-23T11:17:01Z [Term] id: ZFA:0005391 name: head sensory canal system namespace: zebrafish_anatomy def: "Lateral line system on head and pectoral girdle." [TAO:WD] xref: TAO:0001873 is_a: ZFA:0001468 ! anterior lateral line system relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-04-23T01:42:45Z [Term] id: ZFA:0005392 name: infraorbital sensory canal namespace: zebrafish_anatomy def: "Sensory canal associated with the infraorbital bones. Located in close proximity to the otic and supraorbital sensory canals at their union. The infraorbital sensory canal is bilaterally paired. The canal has 3 pores. The first opens dorsally below the nasal sac, the second opens laterally posterior to the anterior maxilary barbel, the third pore is present where infraorbital 1 meets infraorbital 2." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-192] xref: TAO:0001811 is_a: ZFA:0005443 ! sensory canal relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005391 ! head sensory canal system relationship: start ZFS:0000040 ! Larval:Days 14-20 created_by: Ceri creation_date: 2010-04-23T01:44:27Z [Term] id: ZFA:0005393 name: otic sensory canal namespace: zebrafish_anatomy def: "Sensory canal between and in close proximity posteriorly with the post-otic and preoperculo-mandibular sensory canals, and anteriorly with the supraorbital and infraorbital sensory canals. The otic sensory canal is bilaterally paired." [TAO:curator] xref: TAO:0001629 is_a: ZFA:0005443 ! sensory canal relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005391 ! head sensory canal system relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-04-23T01:45:04Z [Term] id: ZFA:0005394 name: post-otic sensory canal namespace: zebrafish_anatomy def: "Sensory canal that forms dorsal to the horizontal semicircular canal of the ear. The anterior end of the canal may span or remain posterior to the pterotic-sphenotic junction. The posterior end of the postotic canal meets the temporal and supratemporal canals. The canal lies between and in close proximity to the trunk sensory canal and anteriorly with the otic and preoperculo-mandibular sensory canals. The post-otic sensory canal is bilaterally paired and when mature is fully enclosed in bone." [TAO:curator, ZFIN:ZDB-PUB-961014-192] synonym: "postotic sensory canal" EXACT [ZFIN:ZDB-PUB-961014-192] xref: TAO:0001619 is_a: ZFA:0005443 ! sensory canal relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005391 ! head sensory canal system relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-04-23T01:45:48Z [Term] id: ZFA:0005395 name: preoperculo-mandibular sensory canal namespace: zebrafish_anatomy def: "Sensory canal lateral or ventral to and in close proximity to the otic and post-otic sensory canals at their union. The preoperculo-mandibular sensory canal is bilaterally paired and associated with the preopercle, angular and dentary bones." [TAO:curator] xref: TAO:0001812 is_a: ZFA:0005443 ! sensory canal relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005391 ! head sensory canal system relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-04-23T01:59:39Z [Term] id: ZFA:0005396 name: supraorbital sensory canal namespace: zebrafish_anatomy def: "Sensory canal contained in the nasal and frontal bones. It contains 4 or 5 neuromast. The first neuromast is positioned in the tubular nasal bone and the other neuromasts are located in the frontal bone. The canal is anterior to and in close proximity to the otic and infraorbital sensory canals. The supraorbital sensory canal is bilaterally paired." [TAO:curator, ZFIN:ZDB-PUB-031103-11] xref: TAO:0001810 is_a: ZFA:0005443 ! sensory canal relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005391 ! head sensory canal system relationship: start ZFS:0000041 ! Larval:Days 21-29 created_by: Ceri creation_date: 2010-04-23T02:00:48Z [Term] id: ZFA:0005397 name: hyoideomandibular nerve namespace: zebrafish_anatomy def: "Nerve that is a branch of cranial nerve VII that passes through or around the suspensorium to innervate muscles and sensory organs on or near pharyngeal arch 2." [TAO:curator] xref: TAO:0002010 is_a: ZFA:0007009 ! nerve relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000664 ! cranial nerve VII relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-04-23T02:54:34Z [Term] id: ZFA:0005398 name: anal fin actinotrichium namespace: zebrafish_anatomy def: "Actinotrichium that is part of the anal fin skeleton." [TAO:curator] synonym: "anal fin actinotricia" EXACT PLURAL [] xref: TAO:0000375 is_a: ZFA:0005435 ! actinotrichium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000167 ! anal fin skeleton relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-04-23T04:54:17Z [Term] id: ZFA:0005399 name: anal fin lepidotrichium 1 namespace: zebrafish_anatomy def: "First lepidotrichium of anal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0001769 is_a: ZFA:0001421 ! anal fin lepidotrichium relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-04-23T04:57:18Z [Term] id: ZFA:0005400 name: anal fin lepidotrichium 2 namespace: zebrafish_anatomy def: "Second lepidotrichium of anal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0001770 is_a: ZFA:0001421 ! anal fin lepidotrichium relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-04-23T04:57:31Z [Term] id: ZFA:0005401 name: anal fin lepidotrichium 3 namespace: zebrafish_anatomy def: "Third epidotrichium of anal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0001771 is_a: ZFA:0001421 ! anal fin lepidotrichium relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-04-23T04:57:43Z [Term] id: ZFA:0005402 name: anal fin lepidotrichium 4 namespace: zebrafish_anatomy def: "Fourth lepidotrichium of anal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0001772 is_a: ZFA:0001421 ! anal fin lepidotrichium relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-04-23T04:57:55Z [Term] id: ZFA:0005403 name: anal fin lepidotrichium 5 namespace: zebrafish_anatomy def: "Fifth lepidotrichium of anal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0001773 is_a: ZFA:0001421 ! anal fin lepidotrichium relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-04-23T04:58:07Z [Term] id: ZFA:0005404 name: anal fin lepidotrichium 6 namespace: zebrafish_anatomy def: "Sixth lepidotrichium of anal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0001774 is_a: ZFA:0001421 ! anal fin lepidotrichium relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-04-23T04:58:19Z [Term] id: ZFA:0005405 name: anal fin lepidotrichium 7 namespace: zebrafish_anatomy def: "Seventh lepidotrichium of anal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0001775 is_a: ZFA:0001421 ! anal fin lepidotrichium relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-04-23T04:58:32Z [Term] id: ZFA:0005406 name: anterior myodome namespace: zebrafish_anatomy def: "Fossa or chamber on anterior portion of orbital region of neurocranium that serves as attachment site for anterior extrinsic eye musculature." [TAO:curator] comment: Dbxref for ZFIN changed to match actual database accession number. Old Dbxref ZDB-ANAT-100614-560 correct Dbxref ZDB-ANAT-100614-60. xref: TAO:0001927 is_a: ZFA:0005388 ! fossa relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-04-23T05:11:17Z [Term] id: ZFA:0005407 name: anterior nasal barbel namespace: zebrafish_anatomy def: "Barbel that is associated with the anterior nostril. Anterior nasal barbel is paired." [TAO:curator] xref: TAO:0001937 is_a: ZFA:0000622 ! barbel relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-04-23T05:12:00Z [Term] id: ZFA:0005408 name: maxillary barbel namespace: zebrafish_anatomy def: "Barbel that is attached to the distal end of the maxilla and that originates on the side of the mouth. Maxillary barbel is paired. Maxillary barbel has considerable range of motion, with contraction and protraction motivated by maxillary blood sinus. The maxillary barbel integument has taste buds. Capable of regeneration." [GOC:ymb, ORCiD:0000-0002-9900-7880, TAO:WD, ZFIN:ZDB-PUB-140816-6] synonym: "ZMB" EXACT [ZFIN:ZDB-PUB-140813-6] xref: TAO:0001938 is_a: ZFA:0000622 ! barbel is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001114 ! head relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-04-23T05:13:52Z [Term] id: ZFA:0005409 name: pars superior ear namespace: zebrafish_anatomy def: "The dorsal part of the ear. Comprises the three semicircular canals, which connect to the utricle." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] xref: TAO:0005409 is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000217 ! inner ear relationship: start ZFS:0000000 ! Unknown created_by: ceri creation_date: 2010-05-17T10:43:19Z [Term] id: ZFA:0005410 name: pars inferior ear namespace: zebrafish_anatomy def: "The ventral portion of the ear. It contains the saccule and the lagena which are the primary auditory organs." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] xref: TAO:0005410 is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000217 ! inner ear relationship: start ZFS:0000000 ! Unknown created_by: ceri creation_date: 2010-05-17T10:51:56Z [Term] id: ZFA:0005411 name: common crus namespace: zebrafish_anatomy def: "Duct that forms when the nonampullary ends of the posterior and anterior semicircular canals merge. The common crus descends connecting the semicircular canals to the horizontal canal." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-010912-7, ZFIN:ZDB-PUB-020403-4] xref: TAO:0005411 is_a: ZFA:0005171 ! duct relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005409 ! pars superior ear relationship: start ZFS:0000000 ! Unknown created_by: ceri creation_date: 2010-05-17T11:03:13Z [Term] id: ZFA:0005412 name: transverse canal namespace: zebrafish_anatomy def: "Duct that crosses the midline connecting the sacculi." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] xref: TAO:0005412 is_a: ZFA:0005171 ! duct relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001138 ! vestibuloauditory system relationship: start ZFS:0000040 ! Larval:Days 14-20 created_by: ceri creation_date: 2010-05-17T03:08:14Z [Term] id: ZFA:0005413 name: perilymph namespace: zebrafish_anatomy def: "Portion of organism substance that is an extracellular fluid that has a low potassium concentration." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010912-7] xref: TAO:0005413 is_a: ZFA:0001487 ! portion of organism substance relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005459 ! perilymphatic space relationship: start ZFS:0000000 ! Unknown created_by: ceri creation_date: 2010-05-17T03:11:11Z [Term] id: ZFA:0005414 name: endolymph namespace: zebrafish_anatomy def: "The portion of organism substance that is an extracellular fluid that has a high potassium and sodium concentration. It bathes the hair cells and is thought to be generated by the semicircular canal epithelium." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-090731-6] xref: TAO:0005414 is_a: ZFA:0001487 ! portion of organism substance relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005409 ! pars superior ear relationship: part_of ZFA:0005410 ! pars inferior ear relationship: start ZFS:0000000 ! Unknown created_by: ceri creation_date: 2010-05-17T03:11:30Z [Term] id: ZFA:0005415 name: inner ear foramen namespace: zebrafish_anatomy def: "Foramen in the inner ear." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0005415 is_a: ZFA:0005386 ! foramen relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000217 ! inner ear relationship: start ZFS:0000000 ! Unknown created_by: ceri creation_date: 2010-05-18T11:11:52Z [Term] id: ZFA:0005416 name: sacculoagenar foramen namespace: zebrafish_anatomy def: "Inner ear foramen that connects the lagena to the caudal half of the saccule." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-020403-4] xref: TAO:0005416 is_a: ZFA:0005415 ! inner ear foramen relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: ceri creation_date: 2010-05-19T07:13:29Z [Term] id: ZFA:0005417 name: utriculosaccular foramen namespace: zebrafish_anatomy def: "Inner ear foramen that connects the rostral saccula to the utricle." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-020403-4] is_a: ZFA:0005415 ! inner ear foramen relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: ceri creation_date: 2010-05-19T07:15:09Z [Term] id: ZFA:0005418 name: auditory fenestra namespace: zebrafish_anatomy def: "Opening in the neurocranium to allow communication between the swim bladder and the inner ear." [TAO:curator] synonym: "auditory fenestrae" EXACT PLURAL [] xref: TAO:0002066 is_a: ZFA:0005386 ! foramen relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-05-25T05:28:33Z [Term] id: ZFA:0005419 name: auditory foramen namespace: zebrafish_anatomy def: "Foramen through which cranial nerve VIII (auditory) exits." [TAO:curator] xref: TAO:0001742 is_a: ZFA:0005386 ! foramen relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-05-25T05:29:43Z [Term] id: ZFA:0005420 name: autopalatine-lateral ethmoid joint namespace: zebrafish_anatomy def: "Joint that articulates the autopalatine and lateral ethmoid and bones. Autopalatine-lateral ethmoid joint is paired." [TAO:curator] xref: TAO:0001608 is_a: ZFA:0005156 ! fibrous joint relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-05-25T05:31:28Z [Term] id: ZFA:0005421 name: autopalatine-maxillary joint namespace: zebrafish_anatomy def: "Joint that articulates the autopalatine cartilage or bone and maxilla." [TAO:curator] xref: TAO:0001942 is_a: ZFA:0001596 ! joint relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000040 ! Larval:Days 14-20 created_by: Ceri creation_date: 2010-05-25T05:32:51Z [Term] id: ZFA:0005422 name: autopalatine-vomer joint namespace: zebrafish_anatomy def: "Joint that articulates autopalatine and vomer bones. Autopalatine vomer joint is paired." [TAO:curator] xref: TAO:0001784 is_a: ZFA:0001596 ! joint relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-05-25T05:34:03Z [Term] id: ZFA:0005423 name: basioccipital-exoccipital joint namespace: zebrafish_anatomy def: "Joint that articulates the basioccipital and exoccipital. Basioccipital exoccipital joint is paired." [TAO:curator] xref: TAO:0002038 is_a: ZFA:0005155 ! cartilaginous joint relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-05-25T05:55:17Z [Term] id: ZFA:0005424 name: caudal fin actinotrichium namespace: zebrafish_anatomy def: "Actinotrichium that is part of the caudal fin skeleton." [TAO:curator] synonym: "caudal fin actinotrichia" EXACT PLURAL [] xref: TAO:0000437 is_a: ZFA:0005435 ! actinotrichium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000862 ! caudal fin skeleton relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-05-25T06:07:35Z [Term] id: ZFA:0005425 name: serous membrane namespace: zebrafish_anatomy def: "A multi-tissue structure that is comprised of a secretory epithelial layer and a connective tissue layer." [http://en.wikipedia.org/wiki/Serous_membrane] xref: TAO:0005425 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000028 ! Segmentation:26+ somites created_by: Ceri creation_date: 2010-05-26T10:36:36Z [Term] id: ZFA:0005426 name: coracoid foramen namespace: zebrafish_anatomy def: "Foramen that is located in the coracoid." [TAO:curator] xref: TAO:0001737 is_a: ZFA:0005386 ! foramen relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-05-26T01:35:35Z [Term] id: ZFA:0005427 name: dentary foramen namespace: zebrafish_anatomy def: "Foramen located on the dentary for passage of the mandibular nerve." [TAO:curator] xref: TAO:0002012 is_a: ZFA:0005386 ! foramen relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-05-26T01:36:29Z [Term] id: ZFA:0005428 name: optic foramen namespace: zebrafish_anatomy def: "Foramen in the orbital region of the neurocranium for the passage of the optic nerve (cranial nerve II)." [TAO:curator] synonym: "optic nerve (II) foramen" EXACT [ZFIN:ZDB-PUB-961014-192] xref: TAO:0002025 is_a: ZFA:0005386 ! foramen relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-05-26T02:34:08Z [Term] id: ZFA:0005429 name: olfactory nerve foramen namespace: zebrafish_anatomy def: "Foramen for the passage of the olfactory nerve or cranial nerve 1." [TAO:curator] xref: TAO:0001804 is_a: ZFA:0005386 ! foramen relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-05-26T02:35:17Z [Term] id: ZFA:0005430 name: orbital foramen namespace: zebrafish_anatomy def: "Foramen in the bone or cartilage comprising the anterior wall of the orbit, and through which passes at least the deep ophthalmic branch of cranial nerve V (trigeminal)." [TAO:curator] xref: TAO:0002031 is_a: ZFA:0005386 ! foramen relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-05-26T02:36:02Z [Term] id: ZFA:0005431 name: scapular foramen namespace: zebrafish_anatomy def: "Foramen that is located in the scapula. The scapular foramen is paired and formed by a ring of bone." [TAO:curator] xref: TAO:0001735 is_a: ZFA:0005386 ! foramen relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-05-26T02:37:13Z [Term] id: ZFA:0005432 name: superficial ophthalmic nerve foramen namespace: zebrafish_anatomy def: "Foramen through which the superficial ophthalmic nerve passes." [TAO:curator] xref: TAO:0001748 is_a: ZFA:0005386 ! foramen relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-05-26T02:38:20Z [Term] id: ZFA:0005433 name: mental barbel namespace: zebrafish_anatomy def: "Barbel that originates on the chin." [TAO:curator] xref: TAO:0002024 is_a: ZFA:0000622 ! barbel relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-05-26T05:43:41Z [Term] id: ZFA:0005434 name: tooth cusp namespace: zebrafish_anatomy def: "Acellular anatomical structure that is a natural outgrowth, prominence, or point that is part of the surface of a tooth." [TAO:curator] xref: TAO:0001973 is_a: ZFA:0000382 ! acellular anatomical structure relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000033 ! Hatching:Long-pec created_by: Ceri creation_date: 2010-05-26T06:11:37Z [Term] id: ZFA:0005435 name: actinotrichium namespace: zebrafish_anatomy def: "Skeletal element which is a slender, horny, flexible, unsegmented fibril which provide structural support to fin folds or fins. Actinotrichia are translucent, exhibit birefringence (double refraction) and are composed of the scleroprotein elastoidine." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "actinotrichia" EXACT PLURAL [] xref: TAO:0000089 is_a: ZFA:0005494 ! skeletal element relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000029 ! Pharyngula:Prim-5 created_by: Ceri creation_date: 2010-06-08T04:31:42Z [Term] id: ZFA:0005436 name: pectoral fin nerve namespace: zebrafish_anatomy def: "Nerve that is part of the pectoral fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] is_a: ZFA:0007009 ! nerve relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001161 ! pectoral fin relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-06-20T10:18:37Z [Term] id: ZFA:0005437 name: pectoral fin motor nerve namespace: zebrafish_anatomy def: "Motor nerve that is located in the pectoral fin." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-070726-9] is_a: ZFA:0005436 ! pectoral fin nerve relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-06-20T10:19:45Z [Term] id: ZFA:0005438 name: pectoral fin sensory nerve namespace: zebrafish_anatomy def: "Sensory nerve that innervates the pectoral fin." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-070726-9] is_a: ZFA:0005436 ! pectoral fin nerve relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-06-20T10:21:38Z [Term] id: ZFA:0005439 name: pectoral fin motor nerve 1 namespace: zebrafish_anatomy def: "Pectoral fin motor nerve that enters the fin from the dorsal side of the fin rostral of all other motor nerves and innervates the dorsal side of the pectoral fin." [ZFIN:ZDB-PUB-070726-9] is_a: ZFA:0005437 ! pectoral fin motor nerve relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000034 ! Hatching:Pec-fin created_by: Ceri creation_date: 2010-06-20T10:22:40Z [Term] id: ZFA:0005440 name: pectoral fin motor nerve 2 namespace: zebrafish_anatomy def: "Pectoral fin motor nerve that enters the fin from the dorsal side of the fin caudal of nerve 1 and rostral of all other motor nerves and innervates the dorsal side of the pectoral fin." [ZFIN:ZDB-PUB-070726-9] is_a: ZFA:0005437 ! pectoral fin motor nerve relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000034 ! Hatching:Pec-fin created_by: Ceri creation_date: 2010-06-20T10:27:40Z [Term] id: ZFA:0005441 name: pectoral fin motor nerve 3 namespace: zebrafish_anatomy def: "Pectoral fin motor nerve that enters the fin from the dorsal side of the fin caudal of nerve 1 and 2 and rostral of nerve 4 and innervates the dorsal side of the pectoral fin." [ZFIN:ZDB-PUB-070726-9] is_a: ZFA:0005437 ! pectoral fin motor nerve relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000034 ! Hatching:Pec-fin created_by: Ceri creation_date: 2010-06-20T10:28:55Z [Term] id: ZFA:0005442 name: articular fossa of opercle namespace: zebrafish_anatomy def: "Fossa of opercle that articulates with hyomandibular condyle for opercle." [TAO:curator] xref: TAO:0001928 is_a: ZFA:0005388 ! fossa relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-06-24T02:57:49Z [Term] id: ZFA:0005443 name: sensory canal namespace: zebrafish_anatomy def: "Multi-tissue structure that is a fluid-filled canal in the integument and usually dermal bones, and contains one or more neuromasts." [TAO:curator] xref: TAO:0001612 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000034 ! lateral line system relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-06-24T05:31:47Z [Term] id: ZFA:0005444 name: trunk sensory canal namespace: zebrafish_anatomy def: "Sensory canal on trunk which is posterior to the pectoral girdle and often reaching to the caudal fin. The trunk sensory canal is bilaterally paired." [TAO:curator] xref: TAO:0001617 is_a: ZFA:0005443 ! sensory canal relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-06-24T05:39:49Z [Term] id: ZFA:0005445 name: supratemporal sensory canal namespace: zebrafish_anatomy def: "Sensory canal that crosses over the dorsal midline and in close proximity to the contralateral post-otic sensory canals. The supratemporal sensory canal is unpaired." [TAO:curator] xref: TAO:0001630 is_a: ZFA:0005443 ! sensory canal relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-06-25T10:45:28Z [Term] id: ZFA:0005446 name: neuromast foramen namespace: zebrafish_anatomy def: "Foramen in a bone that is part of a sensory canal." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-192] is_a: ZFA:0005386 ! foramen relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005443 ! sensory canal relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-06-28T10:26:50Z [Term] id: ZFA:0005447 name: sensory canal tubule namespace: zebrafish_anatomy def: "Sensory canal that is a side branch between a sensory canal proximally and a pore at its distal end. Sensory canal tubule is bilaterally paired although often imperfectly so." [TAO:curator] xref: TAO:0001933 is_a: ZFA:0005443 ! sensory canal relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-06-25T10:46:49Z [Term] id: ZFA:0005448 name: preopercular sensory canal namespace: zebrafish_anatomy def: "Sensory canal associated with the preopercle bone. It lies in close proximity with the otic and post-otic sensory canals at their union, and anteroventrally with the mandibular sensory canal. The preopercular sensory canal is bilaterally paired." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0001813 is_a: ZFA:0005443 ! sensory canal relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005395 ! preoperculo-mandibular sensory canal relationship: start ZFS:0000041 ! Larval:Days 21-29 created_by: Ceri creation_date: 2010-06-25T10:58:48Z [Term] id: ZFA:0005449 name: pore namespace: zebrafish_anatomy def: "An anatomical space that is an opening, usually at the end of a canal or duct, on the surface of the integument or the lining of an internal anatomical space." [TAO:curator] xref: TAO:0001791 is_a: ZFA:0001643 ! anatomical space relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-06-28T11:08:35Z [Term] id: ZFA:0005450 name: pectoral fin motor nerve 4 namespace: zebrafish_anatomy def: "Pectoral fin motor nerve that enters the fin from the ventral side of the fin and innervates the ventral side of the pectoral fin." [ZFIN:ZDB-PUB-070726-9] is_a: ZFA:0005437 ! pectoral fin motor nerve relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000034 ! Hatching:Pec-fin created_by: Ceri creation_date: 2010-06-28T01:47:43Z [Term] id: ZFA:0005451 name: mandibular sensory canal namespace: zebrafish_anatomy def: "Sensory canal associated with the angular and dentary bones. Located anterior and ventral to and in close proximity with the preoperculo-mandibular sensory canal. The mandible sensory canal is bilaterally paired and does not meet at the mandibular symphysis. The mandibular lateral line canal has 3 neuromast located between the canal pores. Two neuromast are located in the portion of the can in the dentary bone. The third neuromast is located in the anguloarticular bone. The rostral end of the canal has a terminal pore adjacent to the mandibular symphysis. There are three more pores, two, at the posterior of the dentary and the anterior of the anguloarticular share a common epithelial pore." [TAO:curator, ZFIN:ZDB-PUB-031103-11] xref: TAO:0001814 is_a: ZFA:0005443 ! sensory canal relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005395 ! preoperculo-mandibular sensory canal relationship: start ZFS:0000042 ! Juvenile:Days 30-44 created_by: Ceri creation_date: 2010-06-25T12:27:58Z [Term] id: ZFA:0005452 name: tract of the caudal commissure namespace: zebrafish_anatomy def: "Tract which originates from several clusters of cell bodies in the rostral midbrain, the anterior tegmentum and the nucleus of the posterior commissure. The neurons that are part of the nucleus of the posterior commissure have axons which course ventrally toward the anterior tegmentum, while the ventral tegmental clusters of neurons have axons which course dorsally along the posterior commissure and cross the dorsal midline to the contralateral side they then turn posteriorly and extend to the posterior region of the tegmentum and eventually into the hindbrain via the tract of the postoptic commissure. ." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-1268, ZFIN:ZDB-PUB-961014-167] synonym: "TPC" RELATED [ZFIN:ZDB-PUB-961014-1268] synonym: "tract of the posterior commissure" EXACT [ZFIN:ZDB-PUB-961014-421] is_a: ZFA:0001682 ! white matter relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000320 ! caudal commissure relationship: start ZFS:0000028 ! Segmentation:26+ somites created_by: Ceri creation_date: 2010-07-21T01:49:43Z [Term] id: ZFA:0005453 name: basicapsular fenestra namespace: zebrafish_anatomy def: "Opening in the prootic. The basicapsular fenestra is paired." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "basicapsular fenestrae" EXACT PLURAL [] is_a: ZFA:0005386 ! foramen relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-06-25T05:40:06Z [Term] id: ZFA:0005454 name: subtemporal fossa namespace: zebrafish_anatomy def: "Fossa where the anteromedial rim is formed by the prootic, the remainder of the fossa is formed by the exoccipital and pterotic." [ZFIN:ZDB-PUB-961014-192] xref: TAO:0001974 is_a: ZFA:0005388 ! fossa relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-06-25T05:47:28Z [Term] id: ZFA:0005455 name: prootic foramen namespace: zebrafish_anatomy def: "Foramen formed between the anterolateral extension of the prootic that contacts the pterosphenoid the prootic and the pterosphenoid." [ZFIN:ZDB-PUB-961014-192] synonym: "anterior trigemino-facialis foramen of Howes" EXACT [] synonym: "trigeminal notch of Harrington" EXACT [] is_a: ZFA:0005386 ! foramen relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-06-25T05:53:27Z [Term] id: ZFA:0005456 name: sinus impar namespace: zebrafish_anatomy def: "Perilymphatic compartment of the zebrafish ear. Chamber positioned ventral of the medulla, the anterior end surrounds the posterior portion of the transverse canal." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-010912-7] is_a: ZFA:0005459 ! perilymphatic space relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-21T02:01:50Z [Term] id: ZFA:0005457 name: dorsal hypohyal-urohyal joint namespace: zebrafish_anatomy def: "Joint that articulates the dorsal hypohyal and urohyal bones. Dorsal hypohyal-urohyal joint is paired." [TAO:curator] xref: TAO:0001847 is_a: ZFA:0001596 ! joint relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-21T02:02:25Z [Term] id: ZFA:0005458 name: dorsal hypohyal-ventral hypohyal joint namespace: zebrafish_anatomy def: "Joint that articulates the dorsal hypohyal and ventral hypohyal bones. Dorsal hypohyal-ventral hypohyal joint is paired." [TAO:curator] xref: TAO:0001845 is_a: ZFA:0001596 ! joint relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-21T02:02:53Z [Term] id: ZFA:0005459 name: perilymphatic space namespace: zebrafish_anatomy def: "Space that contains perilymph." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] is_a: ZFA:0001643 ! anatomical space relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000217 ! inner ear relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-21T02:03:28Z [Term] id: ZFA:0005460 name: atrium of sinus impar namespace: zebrafish_anatomy def: "Bilaterally paired perilymphatic chambers posterior to the sinus impar. These connect to the anterior end of the otic duct." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-010912-7] is_a: ZFA:0005459 ! perilymphatic space relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-21T02:06:23Z [Term] id: ZFA:0005461 name: perilymphatic duct namespace: zebrafish_anatomy def: "Duct that contains perilymph." [GOC:cvs, ORCiD:0000-0002-2244-7917] is_a: ZFA:0005171 ! duct relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-21T02:15:02Z [Term] id: ZFA:0005462 name: otic duct namespace: zebrafish_anatomy def: "Pair of perilymphatic ducts that extend from the dorsal ends of the atria of the sinus impar, pass on either side of the medulla and merge and extend dorsally toward the surface of the head." [ZFIN:ZDB-PUB-010912-7] is_a: ZFA:0005461 ! perilymphatic duct relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-21T02:15:52Z [Term] id: ZFA:0005463 name: oral ectoderm namespace: zebrafish_anatomy def: "Ectoderm of the oral region." [GOC:cvs, ORCiD:0000-0002-2244-7917] is_a: ZFA:0000016 ! ectoderm relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000590 ! oral region relationship: start ZFS:0000033 ! Hatching:Long-pec created_by: Ceri creation_date: 2010-07-21T03:22:11Z [Term] id: ZFA:0005464 name: dentary-anguloarticular joint namespace: zebrafish_anatomy def: "Joint that articulates the dentary and anguloarticular. Dentary-anguloarticular joint is paired." [TAO:curator] xref: TAO:0001749 is_a: ZFA:0001596 ! joint relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-21T03:56:09Z [Term] id: ZFA:0005465 name: ceratohyal-branchiostegal ray joint namespace: zebrafish_anatomy def: "Joint that articulates the ceratohyal and branchiostegal ray bones. Ceratohyal-branchiostegal ray joint is paired." [TAO:curator] xref: TAO:0001850 is_a: ZFA:0001596 ! joint relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-21T03:56:35Z [Term] id: ZFA:0005466 name: ceratohyal-ventral hypohyal joint namespace: zebrafish_anatomy def: "Joint that articulates the ceratohyal and ventral hypohyal bones. Ceratohyal-ventral hypohyal joint is paired." [TAO:curator] xref: TAO:0001844 is_a: ZFA:0001596 ! joint relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-21T03:56:50Z [Term] id: ZFA:0005467 name: ceratohyal-dorsal hypohyal joint namespace: zebrafish_anatomy def: "Joint that articulates the ceratohyal and dorsal hypohyal bones. Ceratohyal-dorsal hypohyal joint is paired." [TAO:curator] xref: TAO:0001843 is_a: ZFA:0001596 ! joint relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-21T03:57:08Z [Term] id: ZFA:0005468 name: frontal-pterotic joint namespace: zebrafish_anatomy def: "Joint that articulates the frontal and pterotic. Frontal-pterotic joint is paired." [TAO:curator] xref: TAO:0001711 is_a: ZFA:0001596 ! joint relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-21T03:57:53Z [Term] id: ZFA:0005469 name: hyomandibula-metapterygoid joint namespace: zebrafish_anatomy def: "Joint that articulates the hyomandibula bone and metapterygoid bone." [TAO:curator] xref: TAO:0001979 is_a: ZFA:0001596 ! joint relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-21T03:58:13Z [Term] id: ZFA:0005470 name: inter-coracoid joint namespace: zebrafish_anatomy def: "Joint between the right and left coracoid bones of the pectoral girdle." [TAO:curator] xref: TAO:0002040 is_a: ZFA:0001596 ! joint relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-21T03:58:45Z [Term] id: ZFA:0005471 name: inter-basipterygium joint namespace: zebrafish_anatomy def: "Joint that articulates the left and right basipterygium cartilage or bone. Inter-basipterygium joint is unpaired." [TAO:curator] xref: TAO:0001939 is_a: ZFA:0001596 ! joint relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-21T03:59:58Z [Term] id: ZFA:0005472 name: inter-frontal joint namespace: zebrafish_anatomy def: "Joint between the left and right frontal bone." [TAO:WD] synonym: "interfrontal joint" EXACT [] synonym: "interfrontal suture" EXACT [ZFIN:ZDB-PUB-060323-12] synonym: "metopic suture" RELATED [ZFIN:ZDB-PUB-060323-12] xref: TAO:0001922 is_a: ZFA:0005156 ! fibrous joint relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005606 ! cranial vault relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-21T04:01:00Z [Term] id: ZFA:0005473 name: interhyal-epihyal joint namespace: zebrafish_anatomy def: "Joint that articulates the interhyal and epihyal bones, or interhyal and ceratohyal cartilages. Interhyal-epihyal joint is paired." [TAO:curator] xref: TAO:0001841 is_a: ZFA:0001596 ! joint relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-21T04:01:23Z [Term] id: ZFA:0005474 name: inter-hypobranchial 3 joint namespace: zebrafish_anatomy def: "Joint that articulates the left and right hypobranchial 3 cartilages or bones. Inter-hypobranchial 3 joint is unpaired." [TAO:curator] xref: TAO:0001863 is_a: ZFA:0001596 ! joint relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-21T04:01:35Z [Term] id: ZFA:0005475 name: inter-premaxillary joint namespace: zebrafish_anatomy def: "Joint that articulates the left and right premaxillary bones. Inter-premaxillary joint is unpaired." [TAO:curator] xref: TAO:0001950 is_a: ZFA:0001596 ! joint relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-21T04:01:59Z [Term] id: ZFA:0005476 name: inter-ventral hypohyal joint namespace: zebrafish_anatomy def: "Joint that articulates the contralateral ventral hypohyal bones or the contralateral ceratobranchial cartilages. Inter-ventral hypohyal joint is paired." [TAO:curator] xref: TAO:0001846 is_a: ZFA:0001596 ! joint relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-21T04:02:17Z [Term] id: ZFA:0005477 name: lateral ethmoid-frontal joint namespace: zebrafish_anatomy def: "Joint that articulates the lateral ethmoid and frontal. Lateral ethmoid-frontal joint is paired." [TAO:curator] xref: TAO:0002032 is_a: ZFA:0001596 ! joint relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-21T04:02:40Z [Term] id: ZFA:0005478 name: opercle-interopercle joint namespace: zebrafish_anatomy def: "Joint that articulates the opercle and interopercle. Opercle-interopercle joint is paired." [TAO:curator] xref: TAO:0001710 is_a: ZFA:0001596 ! joint relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-21T04:03:01Z [Term] id: ZFA:0005479 name: orbitosphenoid-lateral ethmoid joint namespace: zebrafish_anatomy def: "Joint that articulates the orbitosphenoid cartilage or bone and lateral ethmoid cartilage or bone. Orbitosphenoid-lateral ethmoid joint is paired." [TAO:curator] xref: TAO:0001941 is_a: ZFA:0001596 ! joint relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-21T04:03:17Z [Term] id: ZFA:0005480 name: orbitosphenoid-prootic joint namespace: zebrafish_anatomy def: "Joint that articulates orbitosphenoid and prootic bones. Orbitosphenoid-prootic joint is paired." [TAO:curator] xref: TAO:0001794 is_a: ZFA:0001596 ! joint relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-21T04:03:30Z [Term] id: ZFA:0005481 name: prootic-exoccipital joint namespace: zebrafish_anatomy def: "Joint that articulates the prootic and exoccipital. Prootic-exoccipital joint is paired." [TAO:curator] xref: TAO:0002034 is_a: ZFA:0001596 ! joint relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-21T04:41:27Z [Term] id: ZFA:0005482 name: prootic-pterosphenoid joint namespace: zebrafish_anatomy def: "Joint that articulates the prootic and pterosphenoid. Prootic-pterosphenoid joint is paired. The parasphenoid borders the prootic medially in a syndesmosis." [TAO:curator, ZFIN:ZDB-PUB-961014-192] xref: TAO:0002033 is_a: ZFA:0005156 ! fibrous joint relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-21T04:41:53Z [Term] id: ZFA:0005483 name: pterosphenoid-orbitosphenoid joint namespace: zebrafish_anatomy def: "Joint that articulates the pterosphenoid and orbitosphenoid. Pterosphenoid-orbitosphenoid joint is paired." [TAO:curator] xref: TAO:0001831 is_a: ZFA:0001596 ! joint relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-21T04:42:11Z [Term] id: ZFA:0005484 name: quadrate-anguloarticular joint namespace: zebrafish_anatomy def: "Joint that articulates quadrate and anguloarticular bones. Quadrate-articular joint is paired." [TAO:curator] synonym: "jaw joint" RELATED [] xref: TAO:0001802 is_a: ZFA:0005153 ! synovial joint relationship: end ZFS:0000044 ! Adult relationship: overlaps ZFA:0000467 ! anguloarticular relationship: overlaps ZFA:0000621 ! quadrate relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-21T04:44:59Z [Term] id: ZFA:0005485 name: quadrate-hyomandibula joint namespace: zebrafish_anatomy def: "Joint that articulates quadrate and hyomandibula bones. Quadrate-hyomandibula joint is paired." [TAO:curator] xref: TAO:0001801 is_a: ZFA:0001596 ! joint relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-21T04:45:14Z [Term] id: ZFA:0005486 name: quadrate-metapterygoid joint namespace: zebrafish_anatomy def: "Joint that articulates quadrate and metapterygoid bones. Quadrate-metapterygoid joint is paired." [TAO:curator] xref: TAO:0001803 is_a: ZFA:0005155 ! cartilaginous joint relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-21T04:45:27Z [Term] id: ZFA:0005487 name: ventral hypohyal-urohyal joint namespace: zebrafish_anatomy def: "Joint that articulates the ventral hypohyal and urohyal bones. Ventral hypohyal-urohyal joint is paired." [TAO:curator] xref: TAO:0001848 is_a: ZFA:0001596 ! joint relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-21T04:46:00Z [Term] id: ZFA:0005488 name: mandibular symphysis namespace: zebrafish_anatomy def: "Joint that articulates the left and right dentary bones. Mandibular symphysis is unpaired." [TAO:curator] synonym: "dentary symphysis" EXACT [] synonym: "inter-mandibular joint" EXACT [] xref: TAO:0001851 is_a: ZFA:0005155 ! cartilaginous joint relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-21T04:55:35Z [Term] id: ZFA:0005489 name: endocardial precursor namespace: zebrafish_anatomy def: "Is a portion of tissue part of the heart primordium which will give rise to the endocardium." [GOC:cvs, ORCiD:0000-0002-2244-7917] is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000027 ! Segmentation:20-25 somites relationship: part_of ZFA:0000028 ! heart primordium relationship: start ZFS:0000024 ! Segmentation:5-9 somites created_by: Ceri creation_date: 2010-07-21T02:50:10Z [Term] id: ZFA:0005490 name: myocardial precursor namespace: zebrafish_anatomy def: "Portion of tissue that will develop into the myocardium." [GOC:cvs, ORCiD:0000-0002-2244-7917] is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000027 ! Segmentation:20-25 somites relationship: part_of ZFA:0000028 ! heart primordium relationship: start ZFS:0000024 ! Segmentation:5-9 somites created_by: Ceri creation_date: 2010-07-21T02:53:48Z [Term] id: ZFA:0005491 name: optic furrow namespace: zebrafish_anatomy def: "Groove that is in the ventral optic cup remnant of the optic fissure." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-090819-12] synonym: "optic fissure" RELATED [] is_a: ZFA:0001690 ! groove relationship: develops_from ZFA:0001284 ! optic fissure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000107 ! eye relationship: start ZFS:0000030 ! Pharyngula:Prim-15 created_by: Ceri creation_date: 2010-07-21T03:00:49Z [Term] id: ZFA:0005492 name: sphenotic-prootic fossa namespace: zebrafish_anatomy def: "Fossa where the hyomandibula articulates with the sphenotic and prootic to form the hyomandibular-otic region joint." [ZFIN:ZDB-PUB-961014-192] xref: TAO:0002090 is_a: ZFA:0005388 ! fossa relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-22T11:19:01Z [Term] id: ZFA:0005494 name: skeletal element namespace: zebrafish_anatomy def: "Organ entity that is typically involved in mechanical support and may have different skeletal tissue compositions at different stages." [VSAO:curator] xref: TAO:0001890 xref: VSAO:0000128 is_a: ZFA:0000496 ! compound organ relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000434 ! skeletal system relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-22T11:20:29Z [Term] id: ZFA:0005495 name: skin flap namespace: zebrafish_anatomy def: "Surface structure that is a portion of skin that projects or hangs from the body." [TAO:curator] xref: TAO:0001951 is_a: ZFA:0000368 ! integument relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-22T11:21:23Z [Term] id: ZFA:0005496 name: snout namespace: zebrafish_anatomy def: "Surface structure that is the region of the head in front of and between the orbits, and above the lower jaw. Nares are located on the snout." [TAO:curator] xref: TAO:0001712 is_a: ZFA:0001308 ! organism subdivision relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001114 ! head relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-22T11:22:07Z [Term] id: ZFA:0005497 name: epihyal-ceratohyal joint namespace: zebrafish_anatomy def: "Joint that articulates the epihyal and ceratohyal bones. Epihyal-ceratohyal joint is paired." [TAO:curator] xref: TAO:0001842 is_a: ZFA:0001596 ! joint relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-22T12:32:09Z [Term] id: ZFA:0005498 name: epihyal-branchiostegal ray joint namespace: zebrafish_anatomy def: "Joint that articulates the epihyal and branchiostegal ray bones. Epihyal-branchiostegal ray joint is paired." [TAO:curator] xref: TAO:0001849 is_a: ZFA:0001596 ! joint relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-22T12:32:23Z [Term] id: ZFA:0005499 name: circulus namespace: zebrafish_anatomy def: "Fine ridges on surface of scale, often parallel to the circumference of scale." [http://www.briancoad.com/main.asp?page=fishdictionary.htm, TAO:curator] synonym: "circuli" EXACT PLURAL [] xref: TAO:0002051 is_a: ZFA:0000037 ! anatomical structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000277 ! scale relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-22T12:33:11Z [Term] id: ZFA:0005500 name: prootic bulla namespace: zebrafish_anatomy def: "Is a bony partially gas filled sphere located ventral and anterior to the inner ear. The prootic bulla is paired." [GOC:ymb, ORCiD:0000-0002-9900-7880] xref: TAO:0002111 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-22T02:22:46Z [Term] id: ZFA:0005501 name: interopercular-mandibular ligament namespace: zebrafish_anatomy def: "Interopercular-mandibular ligament is a ligament that connects the interopercle to the retroarticular element of the lower jaw." [TAO:curator, ZFIN:ZDB-PUB-961014-192] comment: The interopercle ossifies in the interoperculomandibular ligament, which attaches to the retroarticular. The interopercle approximates and is ligamentously attached to the retroarticular anteroventrally. ZDB-PUB-961014-192. Need develops_in relationship for interopercle. synonym: "interoperculomandibular ligament" EXACT [ZFIN:ZDB-PUB-961014-192] xref: TAO:0001687 is_a: ZFA:0001675 ! ligament relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-22T12:38:04Z [Term] id: ZFA:0005502 name: lateral ethmoid-autopalatine ligament namespace: zebrafish_anatomy def: "Lateral ethmoid-autopalatine ligament is a ligament that connects the lateral ethmoid to the autopalatine." [TAO:curator] xref: TAO:0001944 is_a: ZFA:0001675 ! ligament relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-22T12:38:20Z [Term] id: ZFA:0005503 name: lateral ethmoid-ectopterygoid ligament namespace: zebrafish_anatomy def: "Lateral ethmoid-ectopterygoid ligament is a ligament that connects the lateral ethmoid to the ectopterygoid." [TAO:curator] xref: TAO:0001685 is_a: ZFA:0001675 ! ligament relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-22T12:38:32Z [Term] id: ZFA:0005504 name: vertebra 4-vertebra 5 joint namespace: zebrafish_anatomy def: "Joint between the centra, and sometimes the neural arches or parapophyses of vertebra 4 and vertebra 5." [TAO:curator] xref: TAO:0001940 is_a: ZFA:0005155 ! cartilaginous joint relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-22T01:33:36Z [Term] id: ZFA:0005505 name: vertebra 5-vertebra 6 joint namespace: zebrafish_anatomy def: "Joint between the centra, and sometimes the neural arches or parapophyses." [TAO:curator] xref: TAO:0002054 is_a: ZFA:0005155 ! cartilaginous joint relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-22T01:33:50Z [Term] id: ZFA:0005506 name: vertebra 6 - vertebra 7 joint namespace: zebrafish_anatomy def: "Joint between the centra, and sometimes the neural arches or parapophyses of vertebra 6 and vertebra 7." [TAO:curator] xref: TAO:0002055 is_a: ZFA:0005155 ! cartilaginous joint relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-22T01:34:02Z [Term] id: ZFA:0005507 name: nasal capsule namespace: zebrafish_anatomy def: "Multi-tissue structure composed of connective tissue that surrounds, the internal portions of the olfactory epithelium." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0002035 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-23T11:47:54Z [Term] id: ZFA:0005508 name: inner mental barbel namespace: zebrafish_anatomy def: "Mental barbel that originates on the chin, in an anteromedial position relative to the outer mental barbel. The inner mental barbel is nearer to the mandibular symphysis than is the outer mental barbel." [TAO:curator] xref: TAO:0001969 is_a: ZFA:0005433 ! mental barbel relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-23T12:08:04Z [Term] id: ZFA:0005509 name: palate namespace: zebrafish_anatomy def: "Anatomical cluster that is the upper roof of the mouth that is roofed by bones such as the parasphenoid, prevomer, metapterygoid, orbitosphenoid." [TAO:curator] xref: TAO:0002093 is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000737 ! cranium relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-23T12:10:28Z [Term] id: ZFA:0005510 name: prootic depression namespace: zebrafish_anatomy def: "Shallow area that exists on the prootic." [TAO:curator] xref: TAO:0002052 is_a: ZFA:0005388 ! fossa relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-23T12:30:37Z [Term] id: ZFA:0005511 name: sensory canal tubular ossicle namespace: zebrafish_anatomy def: "Dermal bone that is ring-shaped or cylindrical and surrounds a sensory canal." [TAO:curator] xref: TAO:0001932 is_a: ZFA:0001590 ! dermal bone relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-23T12:32:05Z [Term] id: ZFA:0005512 name: caudal fin principal ray 1 namespace: zebrafish_anatomy def: "Caudal principal ray that is the dorsalmost caudal principal ray of the caudal fin." [TAO:curator] synonym: "caudal principal lepidotrichium 1 " EXACT [] synonym: "caudal principal ray 1 " EXACT [] xref: TAO:0001713 is_a: ZFA:0001585 ! caudal fin principal ray relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-23T12:45:32Z [Term] id: ZFA:0005513 name: caudal fin principal ray 3 namespace: zebrafish_anatomy def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 2." [TAO:curator] synonym: "caudal principal lepidotrichium 3 " EXACT [] synonym: "caudal principal ray 3" EXACT [] xref: TAO:0001715 is_a: ZFA:0001585 ! caudal fin principal ray relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-23T01:01:02Z [Term] id: ZFA:0005514 name: caudal fin principal ray 2 namespace: zebrafish_anatomy def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 1." [TAO:curator] synonym: "caudal principal lepidotrichium 2 " EXACT [] synonym: "caudal principal ray 2" EXACT [] xref: TAO:0001714 is_a: ZFA:0001585 ! caudal fin principal ray relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-23T12:57:40Z [Term] id: ZFA:0005515 name: caudal fin principal ray 4 namespace: zebrafish_anatomy def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 3." [TAO:curator] synonym: "caudal principal lepidotrichium 4 " EXACT [] synonym: "caudal principal ray 4" EXACT [] xref: TAO:0001716 is_a: ZFA:0001585 ! caudal fin principal ray relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-23T01:01:37Z [Term] id: ZFA:0005516 name: caudal fin principal ray 5 namespace: zebrafish_anatomy def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 4." [TAO:curator] synonym: "caudal principal lepidotrichium 5" EXACT [] synonym: "caudal principal ray 5" EXACT [] xref: TAO:0001717 is_a: ZFA:0001585 ! caudal fin principal ray relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-23T01:02:04Z [Term] id: ZFA:0005517 name: caudal fin principal ray 6 namespace: zebrafish_anatomy def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 5." [TAO:curator] synonym: "caudal principal lepidotrichium 6" EXACT [] synonym: "caudal principal ray 6" EXACT [] xref: TAO:0001718 is_a: ZFA:0001585 ! caudal fin principal ray relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-23T01:02:36Z [Term] id: ZFA:0005518 name: caudal fin principal ray 7 namespace: zebrafish_anatomy def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 6." [TAO:curator] synonym: "caudal principal lepidotrichium 7" EXACT [] synonym: "caudal principal ray 7" EXACT [] xref: TAO:0001719 is_a: ZFA:0001585 ! caudal fin principal ray relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-23T01:02:36Z [Term] id: ZFA:0005519 name: caudal fin principal ray 8 namespace: zebrafish_anatomy def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 7." [TAO:curator] synonym: "caudal principal lepidotrichium 8" EXACT [] synonym: "caudal principal ray 8" EXACT [] xref: TAO:0001720 is_a: ZFA:0001585 ! caudal fin principal ray relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-23T01:02:36Z [Term] id: ZFA:0005520 name: caudal fin principal ray 9 namespace: zebrafish_anatomy def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 8." [TAO:curator] synonym: "caudal principal lepidotrichium 9" EXACT [] synonym: "caudal principal ray 9" EXACT [] xref: TAO:0001721 is_a: ZFA:0001585 ! caudal fin principal ray relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-23T01:02:36Z [Term] id: ZFA:0005521 name: caudal fin principal ray 10 namespace: zebrafish_anatomy def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 9." [TAO:curator] synonym: "caudal principal lepidotrichium 10" EXACT [] synonym: "caudal principal ray 10" EXACT [] xref: TAO:0001722 is_a: ZFA:0001585 ! caudal fin principal ray relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-23T01:02:36Z [Term] id: ZFA:0005522 name: caudal fin principal ray 11 namespace: zebrafish_anatomy def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 10." [TAO:curator] synonym: "caudal principal lepidotrichium 11" EXACT [] synonym: "caudal principal ray 11" EXACT [] xref: TAO:0001723 is_a: ZFA:0001585 ! caudal fin principal ray relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-23T01:02:36Z [Term] id: ZFA:0005523 name: caudal fin principal ray 12 namespace: zebrafish_anatomy def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 11." [TAO:curator] synonym: "caudal principal lepidotrichium 12" EXACT [] synonym: "caudal principal ray 12" EXACT [] xref: TAO:0001724 is_a: ZFA:0001585 ! caudal fin principal ray relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-23T01:02:36Z [Term] id: ZFA:0005524 name: caudal fin principal ray 14 namespace: zebrafish_anatomy def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 13." [TAO:curator] synonym: "caudal principal lepidotrichium 14" EXACT [] synonym: "caudal principal ray 14" EXACT [] xref: TAO:0001726 is_a: ZFA:0001585 ! caudal fin principal ray relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-23T01:02:36Z [Term] id: ZFA:0005525 name: caudal fin principal ray 15 namespace: zebrafish_anatomy def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 14." [TAO:curator] synonym: "caudal principal lepidotrichium 15" EXACT [] synonym: "caudal principal ray 15" EXACT [] xref: TAO:0001727 is_a: ZFA:0001585 ! caudal fin principal ray relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-23T01:02:36Z [Term] id: ZFA:0005526 name: caudal fin principal ray 16 namespace: zebrafish_anatomy def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 15." [TAO:curator] synonym: "caudal principal lepidotrichium 16" EXACT [] synonym: "caudal principal ray 16" EXACT [] xref: TAO:0001728 is_a: ZFA:0001585 ! caudal fin principal ray relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-23T01:02:36Z [Term] id: ZFA:0005527 name: caudal fin principal ray 17 namespace: zebrafish_anatomy def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 16." [TAO:curator] synonym: "caudal principal lepidotrichium 17" EXACT [] synonym: "caudal principal ray 17" EXACT [] xref: TAO:0001729 is_a: ZFA:0001585 ! caudal fin principal ray relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-23T01:02:36Z [Term] id: ZFA:0005528 name: caudal fin principal ray 18 namespace: zebrafish_anatomy def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 17." [TAO:curator] synonym: "caudal principal lepidotrichium 18" EXACT [] synonym: "caudal principal ray 18" EXACT [] xref: TAO:0001730 is_a: ZFA:0001585 ! caudal fin principal ray relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-23T01:02:36Z [Term] id: ZFA:0005529 name: caudal fin principal ray 19 namespace: zebrafish_anatomy def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 18." [TAO:curator] synonym: "caudal principal lepidotrichium 19" EXACT [] synonym: "caudal principal ray 19" EXACT [] xref: TAO:0001731 is_a: ZFA:0001585 ! caudal fin principal ray relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-23T01:02:36Z [Term] id: ZFA:0005530 name: lateral line scale namespace: zebrafish_anatomy def: "Scale that is associated with the lateral line sensory canal." [TAO:curator] xref: TAO:0001824 is_a: ZFA:0000277 ! scale relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-23T01:49:27Z [Term] id: ZFA:0005531 name: bony shelf above orbit namespace: zebrafish_anatomy def: "The bony shelf above orbit is an anatomical cluster formed by the dorsolateral portions of the lateral ethmoid, frontal and sphenotic bones that forms the dorsal margin of the orbit." [TAO:curator] xref: TAO:0001686 is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-23T01:52:58Z [Term] id: ZFA:0005532 name: bony plate namespace: zebrafish_anatomy def: "Dermal bone that is located on or subjacent to the surface anywhere on the body and that is not part of the general complement of scales, dermal bone of the dermatocranium, postcranial axial skeleton or paired fin skeleton. Bony plate may exist singly, or as unpaired or paired clusters or series." [TAO:curator] xref: TAO:0002053 is_a: ZFA:0001590 ! dermal bone relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-23T01:53:33Z [Term] id: ZFA:0005533 name: branched caudal fin ray namespace: zebrafish_anatomy def: "Caudal fin lepidotrichium that is distally branched." [TAO:curator] xref: TAO:0002062 is_a: ZFA:0001550 ! caudal fin lepidotrichium relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-23T01:55:31Z [Term] id: ZFA:0005534 name: branched dorsal fin ray namespace: zebrafish_anatomy def: "Dorsal fin ray that is distally branched." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0001785 is_a: ZFA:0001418 ! dorsal fin lepidotrichium relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-23T01:55:54Z [Term] id: ZFA:0005535 name: branched anal fin ray namespace: zebrafish_anatomy def: "Anal fin lepidotrichium that is distally branched." [TAO:curator] synonym: "anal fin branched ray" EXACT [] xref: TAO:0001992 is_a: ZFA:0001421 ! anal fin lepidotrichium relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-23T01:56:47Z [Term] id: ZFA:0005536 name: fontanel namespace: zebrafish_anatomy def: "Anatomical space between bones of the neurocranium. Frequently closes during development." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0001738 is_a: ZFA:0001643 ! anatomical space relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001580 ! neurocranium relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-29T06:27:16Z [Term] id: ZFA:0005537 name: lateral fontanel of frontal namespace: zebrafish_anatomy def: "Fontanel within the frontal bone near the frontal-sphenotic joint. Lateral fontanel of frontal is paired." [TAO:curator] xref: TAO:0002011 is_a: ZFA:0005536 ! fontanel relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-29T06:28:46Z [Term] id: ZFA:0005538 name: rib of vertebra 1 namespace: zebrafish_anatomy def: "Rib that articulates with the parapophysis of the first centrum." [TAO:curator] xref: TAO:0001879 is_a: ZFA:0000538 ! rib relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-29T06:29:54Z [Term] id: ZFA:0005539 name: rib of vertebra 2 namespace: zebrafish_anatomy def: "Rib that articulates with the parapophysis of the second centrum." [TAO:curator] xref: TAO:0001878 is_a: ZFA:0000538 ! rib relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-29T06:30:06Z [Term] id: ZFA:0005540 name: rib of vertebra 3 namespace: zebrafish_anatomy def: "Rib that articulates with the parapophysis of the third centrum." [TAO:curator] xref: TAO:0001880 is_a: ZFA:0000538 ! rib relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-29T06:30:18Z [Term] id: ZFA:0005541 name: rib of vertebra 4 namespace: zebrafish_anatomy def: "Rib that articulates with the parapophysis of the fourth centrum." [TAO:curator] xref: TAO:0001881 is_a: ZFA:0000538 ! rib relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-29T06:30:34Z [Term] id: ZFA:0005542 name: rib of vertebra 5 namespace: zebrafish_anatomy def: "Rib that articulates with the parapophysis of the fifth centrum." [TAO:curator] xref: TAO:0001751 is_a: ZFA:0000538 ! rib relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-29T06:30:51Z [Term] id: ZFA:0005543 name: rib of vertebra 6 namespace: zebrafish_anatomy def: "Rib that articulates with the parapophysis of the sixth centrum." [TAO:curator] xref: TAO:0001750 is_a: ZFA:0000538 ! rib relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-29T06:31:02Z [Term] id: ZFA:0005544 name: hyomandibular-otic region joint namespace: zebrafish_anatomy def: "Joint that articulates the hyomandibular cartilage or bone and otic region cartilage or sphenotic bone, and often pterotic bone and prootic bone. Hyomandibular-otic region joint is paired." [TAO:curator] synonym: "hyomandibula-sphenotic-prootic joint" EXACT [] xref: TAO:0001947 is_a: ZFA:0005153 ! synovial joint relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-30T10:38:51Z [Term] id: ZFA:0005545 name: pectoral fin actinotrichium namespace: zebrafish_anatomy def: "Actinotrichium that is part of the pectoral fin." [TAO:curator] xref: TAO:0000544 is_a: ZFA:0005435 ! actinotrichium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000943 ! pectoral fin skeleton relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-30T10:50:19Z [Term] id: ZFA:0005546 name: pelvic fin actinotrichium namespace: zebrafish_anatomy def: "Actinotrichium that is part of the pelvic fin." [TAO:curator] xref: TAO:0000596 is_a: ZFA:0005435 ! actinotrichium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001387 ! pelvic fin skeleton relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-30T10:50:46Z [Term] id: ZFA:0005547 name: pectoral fin lepidotrichium 1 namespace: zebrafish_anatomy def: "Pectoral fin lepidotrichium 1 is the leading or marginal ray of the fin and articulates with the scapula. Lepidotrichium 1 is commonly segmented but unbranched." [TAO:curator] xref: TAO:0001761 is_a: ZFA:0001551 ! pectoral fin lepidotrichium relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-30T10:55:24Z [Term] id: ZFA:0005548 name: pectoral fin lepidotrichium 2 namespace: zebrafish_anatomy def: "Pectoral fin lepidotrichium that, in a linear sequence, is the second most anterior pectoral ray, usually branched and segmented." [TAO:curator] xref: TAO:0001762 is_a: ZFA:0001551 ! pectoral fin lepidotrichium relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-30T10:58:18Z [Term] id: ZFA:0005549 name: pectoral fin lepidotrichium 3 namespace: zebrafish_anatomy def: "Pectoral fin lepidotrichium that, in a linear sequence, is the third most anterior pectoral ray, usually branched and segmented." [TAO:curator] xref: TAO:0001763 is_a: ZFA:0001551 ! pectoral fin lepidotrichium relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-30T10:58:24Z [Term] id: ZFA:0005550 name: pectoral fin lepidotrichium 6 namespace: zebrafish_anatomy def: "Pectoral fin lepidotrichium that, in a linear sequence, is the sixth most anterior pectoral ray, usually branched and segmented." [TAO:curator] xref: TAO:0001766 is_a: ZFA:0001551 ! pectoral fin lepidotrichium relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-30T10:59:08Z [Term] id: ZFA:0005551 name: pectoral fin lepidotrichium 7 namespace: zebrafish_anatomy def: "Pectoral fin lepidotrichium that, in a linear sequence, is the seventh most anterior pectoral ray, usually branched and segmented." [TAO:curator] xref: TAO:0001767 is_a: ZFA:0001551 ! pectoral fin lepidotrichium relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-30T10:59:13Z [Term] id: ZFA:0005552 name: pectoral fin lepidotrichium 5 namespace: zebrafish_anatomy def: "Pectoral fin lepidotrichium that, in a linear sequence, is the fifth most anterior pectoral ray , usually branched and segmented." [TAO:curator] xref: TAO:0001765 is_a: ZFA:0001551 ! pectoral fin lepidotrichium relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-30T10:59:20Z [Term] id: ZFA:0005553 name: pectoral fin lepidotrichium 4 namespace: zebrafish_anatomy def: "Pectoral fin lepidotrichium that, in a linear sequence, is the fourth most anterior pectoral ray, usually branched and segmented." [TAO:curator] xref: TAO:0001764 is_a: ZFA:0001551 ! pectoral fin lepidotrichium relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-30T10:59:26Z [Term] id: ZFA:0005554 name: pelvic fin lepidotrichium 1 namespace: zebrafish_anatomy def: "First lepidotrichium of pelvic fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0001776 is_a: ZFA:0001552 ! pelvic fin lepidotrichium relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-30T11:13:56Z [Term] id: ZFA:0005555 name: pelvic fin lepidotrichium 2 namespace: zebrafish_anatomy def: "Second lepidotrichium of pelvic fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0001777 is_a: ZFA:0001552 ! pelvic fin lepidotrichium relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-30T11:15:37Z [Term] id: ZFA:0005556 name: pelvic fin lepidotrichium 4 namespace: zebrafish_anatomy def: "Fourth lepidotrichium of pelvic fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0001779 is_a: ZFA:0001552 ! pelvic fin lepidotrichium relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-30T11:15:48Z [Term] id: ZFA:0005557 name: pelvic fin lepidotrichium 3 namespace: zebrafish_anatomy def: "Third lepidotrichium of pelvic fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] xref: TAO:0001778 is_a: ZFA:0001552 ! pelvic fin lepidotrichium relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-30T11:15:48Z [Term] id: ZFA:0005558 name: orbit namespace: zebrafish_anatomy def: "Anatomical space that is the concavity containing the eye." [TAO:curator] xref: TAO:0001967 is_a: ZFA:0001643 ! anatomical space relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-07-30T11:17:20Z [Term] id: ZFA:0005559 name: vascular sprouts namespace: zebrafish_anatomy def: "Portion of vessel wall that extends to form a new vessel." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "angiogenic sprout" RELATED [] is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0005249 ! vasculature relationship: start ZFS:0000028 ! Segmentation:26+ somites created_by: Ceri creation_date: 2010-09-23T05:54:14Z [Term] id: ZFA:0005560 name: parasphenoid-basioccipital joint namespace: zebrafish_anatomy def: "Joint that articulates the parasphenoid and basioccipital. Parasphenoid-basioccipital joint is paired." [TAO:curator] xref: TAO:0001832 is_a: ZFA:0005156 ! fibrous joint relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-09-24T11:52:49Z [Term] id: ZFA:0005561 name: vitreous namespace: zebrafish_anatomy def: "Portion of organism substance that is a gelatinous extracellular matrix structure that fills the vitreous cavity of the eye." [GOC:cvs, ORCiD:0000-0002-2244-7917, PMID:18344966] synonym: "vitreous body" EXACT [] synonym: "vitreous humor" EXACT [] xref: TAO:0002290 is_a: ZFA:0001487 ! portion of organism substance relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005567 ! posterior segment eye relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-11-10T01:16:52Z [Term] id: ZFA:0005562 name: Bruch's membrane namespace: zebrafish_anatomy def: "Acellular anatomical structure that is the innermost layer of the optic choroid." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-070614-11] synonym: "vitreous lamina" EXACT [] is_a: ZFA:0000382 ! acellular anatomical structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005229 ! optic choroid relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-11-10T02:16:43Z [Term] id: ZFA:0005563 name: sclera namespace: zebrafish_anatomy def: "Multi-tissue structure that composes the opaque fibrous outer layer of the eye." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-050701-15] xref: TAO:0002289 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000107 ! eye relationship: start ZFS:0000034 ! Hatching:Pec-fin created_by: Ceri creation_date: 2010-11-11T10:53:23Z [Term] id: ZFA:0005564 name: aqueous humor namespace: zebrafish_anatomy def: "Clear ocular fluid in the anterior segment of the eye. It is produced primarily by dorsal ciliary epithelial cells." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-050701-15] xref: TAO:0002288 is_a: ZFA:0001487 ! portion of organism substance relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005876 ! anterior chamber eye relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-11-11T11:10:25Z [Term] id: ZFA:0005565 name: tether cell namespace: zebrafish_anatomy def: "A specialized hair cell that has an elongated kinocilium upon which an otolith accretes. The tether cell then anchors the otolith in place." [ZFIN:ZDB-PUB-971216-3] subset: cell_slim xref: CL:0002450 is_a: ZFA:0009366 ! hair cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-11-11T01:59:44Z [Term] id: ZFA:0005566 name: anterior segment eye namespace: zebrafish_anatomy def: "Anatomical cluster comprising the rostral portion of the eye; the cornea, lens, iris, ciliary zone, anterior chamber, and annular ligament." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-050701-15] is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000107 ! eye relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-11-11T05:44:57Z [Term] id: ZFA:0005567 name: posterior segment eye namespace: zebrafish_anatomy def: "Anatomical cluster comprising the caudal portion of the eye: the retina, posterior chamber, optic choroid, and vitreous." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-050701-15] is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000107 ! eye relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-11-12T11:52:42Z [Term] id: ZFA:0005568 name: iris blood vessels namespace: zebrafish_anatomy def: "Blood vessels within the stroma of the iris. The vessels cluster and are more dense at the base of the stroma where the iris is thicker." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-050701-15] is_a: ZFA:0001079 ! blood vasculature relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001238 ! iris relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-12-01T02:00:15Z [Term] id: ZFA:0005569 name: iris stroma namespace: zebrafish_anatomy def: "Portion of the iris which contains bundles of fibers, most of which are oriented radially around the pupil. The stroma is innervated by the iris blood vessels and develops from the periocular mesenchyme." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-050701-15] is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001238 ! iris relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-12-01T02:28:06Z [Term] id: ZFA:0005570 name: corneo-scleral junction namespace: zebrafish_anatomy def: "The line where the cornea and the sclera meet." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-090309-8] is_a: ZFA:0001689 ! anatomical line relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000107 ! eye relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-11-12T03:45:32Z [Term] id: ZFA:0005571 name: ventral canal eye namespace: zebrafish_anatomy def: "Duct present in the angle where the cornea meets the ciliary zone that absorbs the aqueous humor." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-050701-15] is_a: ZFA:0005171 ! duct relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000107 ! eye relationship: start ZFS:0000035 ! Larval:Protruding-mouth created_by: Ceri creation_date: 2010-11-12T03:51:50Z [Term] id: ZFA:0005572 name: periocular mesenchyme namespace: zebrafish_anatomy def: "Head mesenchyme surrounding the immature eye that gives rise to specialized structures of the anterior segment of the eye." [ZFIN:ZDB-PUB-050701-15] is_a: ZFA:0000113 ! head mesenchyme relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000029 ! Pharyngula:Prim-5 created_by: Ceri creation_date: 2010-12-02T12:29:18Z [Term] id: ZFA:0005573 name: zonule namespace: zebrafish_anatomy def: "Modified or toughened vitreous that suspend the lens at the equator to the non-pigmented epithelium of the ciliary zone. In zebrafish, dorsal zonules are thickened as compared to ventral zonules. In both dorsal and ventral regions, these fibers delimit the vitreous body aqueous humor boundary." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-050701-15] synonym: "zonules" EXACT PLURAL [] is_a: ZFA:0001487 ! portion of organism substance relationship: develops_from ZFA:0005561 ! vitreous relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000107 ! eye relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2010-12-02T06:08:45Z [Term] id: ZFA:0005574 name: lens capsule namespace: zebrafish_anatomy def: "The lens capsule is a modified basement membrane that completely surrounds the ocular lens." [GOC:cvs, ORCiD:0000-0002-2244-7917, PMID:18773892] is_a: ZFA:0000382 ! acellular anatomical structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000035 ! lens relationship: start ZFS:0000035 ! Larval:Protruding-mouth created_by: Ceri creation_date: 2010-12-03T11:36:36Z [Term] id: ZFA:0005575 name: brain nucleus namespace: zebrafish_anatomy def: "Portion of tissue that are compact accumulations of neurons having roughly similar connections and functions." [GOC:mh, ISBN:0878937420, ORCiD:0000-0001-9114-8737] synonym: "brain nuclei" EXACT PLURAL [] is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000008 ! brain relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2011-01-28T05:31:14Z [Term] id: ZFA:0005576 name: ventral thalamus nucleus namespace: zebrafish_anatomy def: "Brain nuclei located in the ventral thalamus." [GOC:cvs, ORCiD:0000-0002-2244-7917] is_a: ZFA:0001659 ! diencephalic nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000458 ! ventral thalamus relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2011-02-24T04:49:33Z [Term] id: ZFA:0005577 name: tegmental nucleus namespace: zebrafish_anatomy is_a: ZFA:0001665 ! midbrain nucleus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000160 ! tegmentum relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2011-02-24T04:54:52Z [Term] id: ZFA:0005578 name: spinal nerve root namespace: zebrafish_anatomy def: "The multi-tissue structure that is the beginning of the spinal nerve leaving the spinal cord." [http://en.wikipedia.org/wiki/Nerve_root] is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000075 ! spinal cord relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2011-03-04T05:17:42Z [Term] id: ZFA:0005579 name: NCC ionocyte namespace: zebrafish_anatomy def: "Integument ionocyte rich in Na-Cl co-transporter (NCC) activity." [ZFIN:ZDB-PUB-090318-15] subset: cell_slim synonym: "NCC cell" EXACT [] is_a: ZFA:0005325 ! integument ionocyte relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000368 ! integument relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2011-03-07T02:03:05Z [Term] id: ZFA:0005580 name: rostral pars anterior namespace: zebrafish_anatomy def: "Rostral portion of pars anterior of the adenohypophysis where corticotropes and lactotropes localize." [ZFIN:ZDB-PUB-080616-4] synonym: "rostral pars distalis" EXACT [] is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0001195 ! pars anterior relationship: start ZFS:0000033 ! Hatching:Long-pec created_by: Ceri creation_date: 2011-04-13T11:44:33Z [Term] id: ZFA:0005581 name: proximal pars anterior namespace: zebrafish_anatomy def: "Caudal portion of pars anterior of the adenohypophysis where somatotropes, thyrotropes and gonadotropes are localized. The proximal pars anterior has functional homology to the mammalian pars tuberalis, secreting the same hormones." [ZFIN:ZDB-PUB-080616-4] synonym: " proximal pars distalis" EXACT [] is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0001195 ! pars anterior relationship: start ZFS:0000033 ! Hatching:Long-pec created_by: Ceri creation_date: 2011-04-13T02:37:52Z [Term] id: ZFA:0005582 name: dorsal proneural cluster namespace: zebrafish_anatomy def: "Cluster of cells along the edge of the neural plate that have the potential to become neuroblast." [ZFIN:ZDB-PUB-990921-1] is_a: ZFA:0000068 ! proneural cluster relationship: end ZFS:0000024 ! Segmentation:5-9 somites relationship: start ZFS:0000023 ! Segmentation:1-4 somites created_by: Ceri creation_date: 2011-04-14T02:02:16Z [Term] id: ZFA:0005583 name: ventral proneural cluster namespace: zebrafish_anatomy def: "Cluster of cells along the center of the neural plate that have the potential to become neuroblast." [ZFIN:ZDB-PUB-990921-1] is_a: ZFA:0000068 ! proneural cluster relationship: end ZFS:0000024 ! Segmentation:5-9 somites relationship: start ZFS:0000023 ! Segmentation:1-4 somites created_by: Ceri creation_date: 2011-04-14T02:02:55Z [Term] id: ZFA:0005584 name: developing mesonephric nephron namespace: zebrafish_anatomy def: "Anatomical cluster which give rise to mature mesonephric nephrons. Zebrafish continously generate new mesonephric nephrons." [GOC:cvs, ORCiD:0000-0002-2244-7917] is_a: ZFA:0005282 ! nephron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000039 ! Larval:Days 7-13 created_by: Ceri creation_date: 2011-04-26T04:10:09Z [Term] id: ZFA:0005585 name: developing mesonephric proximal tubule namespace: zebrafish_anatomy def: "Renal duct that will develop into the mesonephric proximal tubule." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] is_a: ZFA:0005289 ! renal duct relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001287 ! renal tubule relationship: part_of ZFA:0005584 ! developing mesonephric nephron relationship: part_of ZFA:0005590 ! capillary loop nephron relationship: start ZFS:0000039 ! Larval:Days 7-13 created_by: Ceri creation_date: 2011-04-27T10:55:07Z [Term] id: ZFA:0005586 name: renal vesicle namespace: zebrafish_anatomy def: "Hollow cluster of epithelial cells derived from the nephron progenitor." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-110131-33] synonym: "stage I nephron" EXACT [] is_a: ZFA:0001477 ! portion of tissue is_a: ZFA:0005584 ! developing mesonephric nephron relationship: develops_from ZFA:0005587 ! nephron progenitor relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000039 ! Larval:Days 7-13 created_by: Ceri creation_date: 2011-04-26T04:25:56Z [Term] id: ZFA:0005587 name: nephron progenitor namespace: zebrafish_anatomy def: "Cluster of cells comprising a portion of tissue which gives rise to new mesonephric nephrons. The cluster contains self-renewing stem cells." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-110131-33] is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000529 ! kidney relationship: start ZFS:0000037 ! Larval:Day 5 created_by: Ceri creation_date: 2011-04-26T04:26:56Z [Term] id: ZFA:0005588 name: comma-shaped body namespace: zebrafish_anatomy def: "Developing nephron with a comma shaped appearance." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-110131-33] is_a: ZFA:0005584 ! developing mesonephric nephron relationship: develops_from ZFA:0005586 ! renal vesicle relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000039 ! Larval:Days 7-13 created_by: Ceri creation_date: 2011-04-26T04:41:04Z [Term] id: ZFA:0005589 name: s-shaped body namespace: zebrafish_anatomy def: "Developing nephron with a tubular morphology that has a renal corpuscle anlage at the distal end." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-110131-33] synonym: "stage II nephron" RELATED [] is_a: ZFA:0005584 ! developing mesonephric nephron relationship: develops_from ZFA:0005588 ! comma-shaped body relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000039 ! Larval:Days 7-13 created_by: Ceri creation_date: 2011-04-26T05:07:54Z [Term] id: ZFA:0005590 name: capillary loop nephron namespace: zebrafish_anatomy def: "Developing nephron where the developing glomerular capsule has been invaded by a glomerular capillary loop called the glomerular tuft." [GOC:cvs, ORCiD:0000-0002-2244-7917] is_a: ZFA:0005584 ! developing mesonephric nephron relationship: develops_from ZFA:0005589 ! s-shaped body relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000039 ! Larval:Days 7-13 created_by: Ceri creation_date: 2011-04-26T05:45:15Z [Term] id: ZFA:0005591 name: developing mesonephric distal tubule namespace: zebrafish_anatomy def: "Renal duct that will develop into the mesonephric distal tubule." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] is_a: ZFA:0005289 ! renal duct relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001287 ! renal tubule relationship: part_of ZFA:0005584 ! developing mesonephric nephron relationship: part_of ZFA:0005590 ! capillary loop nephron relationship: start ZFS:0000039 ! Larval:Days 7-13 created_by: Ceri creation_date: 2011-04-27T10:55:41Z [Term] id: ZFA:0005592 name: mesonephric nephron namespace: zebrafish_anatomy def: "A branched nephron of the mature kidney." [ZFIN:ZDB-PUB-110131-33] synonym: "stage IV nephron" EXACT [] is_a: ZFA:0005282 ! nephron relationship: develops_from ZFA:0005584 ! developing mesonephric nephron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000039 ! Larval:Days 7-13 created_by: Ceri creation_date: 2011-04-27T12:15:19Z [Term] id: ZFA:0005593 name: neuraxis flexure namespace: zebrafish_anatomy def: "An anatomical structure that is regional part of the central nervous system where there is a significant bend of the axis." [GOC:cvs, ORCiD:0000-0002-2244-7917] is_a: ZFA:0000037 ! anatomical structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000012 ! central nervous system relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2011-05-02T01:03:43Z [Term] id: ZFA:0005594 name: anatomical surface namespace: zebrafish_anatomy def: "Non-material anatomical entity of two dimensions, that is demarcated by anatomical lines or points on the external or internal surfaces of anatomical structures." [CARO:MAH, ORCiD:0000-0001-9114-8737] xref: CARO:0000010 is_a: ZFA:0100000 ! zebrafish anatomical entity relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: ZFIN creation_date: 2011-03-22T10:34:12Z [Term] id: ZFA:0005595 name: caudal fin principal ray 13 namespace: zebrafish_anatomy def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 12." [TAO:curator] synonym: "caudal principal lepidotrichium 13" EXACT [] synonym: "caudal principal ray 13" EXACT [] xref: TAO:0001725 is_a: ZFA:0001585 ! caudal fin principal ray relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2011-11-04T02:44:32Z [Term] id: ZFA:0005596 name: paired fin namespace: zebrafish_anatomy def: "Fin that is one of a pair located ventrally on the organism." [TAO:curator] xref: TAO:0002278 is_a: ZFA:0000108 ! fin relationship: develops_from ZFA:0001383 ! fin bud relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000030 ! Pharyngula:Prim-15 created_by: Ceri creation_date: 2011-11-11T11:22:21Z [Term] id: ZFA:0005597 name: median fin namespace: zebrafish_anatomy def: "Fin that is an unpaired fin located in the sagittal plane of the organism." [TAO:curator] xref: TAO:0002276 is_a: ZFA:0000108 ! fin relationship: develops_from ZFA:0000040 ! median fin fold relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2011-11-11T11:33:02Z [Term] id: ZFA:0005598 name: pancreatic epsilon cell namespace: zebrafish_anatomy alt_id: ZFA:0009382 def: "Ghrelin secreting cells found in the found in the exocrine pancreas." [PMID:14970313] comment: In mammals the endocrine pancreas is called the Islets of Langerhans. subset: cell_slim synonym: "pancreatic E cell" EXACT [] xref: CL:0005019 is_a: ZFA:0005599 ! ghrelin secreting cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001249 ! exocrine pancreas relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2011-11-17T01:02:01Z [Term] id: ZFA:0005599 name: ghrelin secreting cell namespace: zebrafish_anatomy alt_id: ZFA:0009381 def: "A cell that secretes ghrelin, the peptide hormone that stimulates hunger." [CL:curator] subset: cell_slim xref: CL:0005018 is_a: ZFA:0009100 ! peptide hormone secreting cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2011-11-17T01:03:24Z [Term] id: ZFA:0005600 name: sinoatrial region namespace: zebrafish_anatomy def: "Region at venious pole of heart tube that initiates heart beat." [ZFIN:ZDB-PUB-101115-23] is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000031 ! Pharyngula:Prim-25 relationship: part_of ZFA:0000360 ! heart tube relationship: part_of ZFA:0005063 ! cardiac conduction system relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2011-11-22T04:14:44Z [Term] id: ZFA:0005601 name: sinoatrial ring namespace: zebrafish_anatomy def: "Ring of cardiac conduction tissue around the sinoatrial region of the heart tube that performs pacemaker function." [ZFIN:ZDB-PUB-101115-23] is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0005600 ! sinoatrial region relationship: end ZFS:0000035 ! Larval:Protruding-mouth relationship: part_of ZFA:0000114 ! heart relationship: part_of ZFA:0005063 ! cardiac conduction system relationship: start ZFS:0000032 ! Pharyngula:High-pec created_by: Ceri creation_date: 2011-11-22T04:16:19Z [Term] id: ZFA:0005602 name: supraneural 10 namespace: zebrafish_anatomy def: "Supraneural located posterior to supraneural 9. This supraneural does not appear in most specimens." [ZFIN:ZDB-PUB-031103-13] is_a: ZFA:0001397 ! post-Weberian supraneural relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000040 ! Larval:Days 14-20 created_by: jonknight creation_date: 2011-12-05T12:56:49Z [Term] id: ZFA:0005603 name: lymphangiogenic sprout namespace: zebrafish_anatomy def: "Portion of vessel wall that extends to form a new lymph vessel." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-100719-62] is_a: ZFA:0005559 ! vascular sprouts relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000030 ! Pharyngula:Prim-15 created_by: Ceri creation_date: 2011-12-27T12:39:43Z [Term] id: ZFA:0005604 name: angiogenic sprout namespace: zebrafish_anatomy def: "Portion of vessel wall that extends to form a new blood vessel." [GOC:cvs, ORCiD:0000-0002-2244-7917] is_a: ZFA:0005559 ! vascular sprouts relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000030 ! Pharyngula:Prim-15 created_by: Ceri creation_date: 2011-12-27T12:41:09Z [Term] id: ZFA:0005605 name: lymphangioblast cord namespace: zebrafish_anatomy def: "The primordial vasculature that will develop into lymph vessels. The lymphangioblast cord is composed of lymphangioblast or lymph endothelial cells in a solid linear mass called a cord. The cord then undergoes morphogenesis to form the lumen of the vessel." [ZFIN:ZDB-PUB-100719-62] synonym: "parachordal lymphangioblast string" EXACT [ZFIN:ZDB-PUB-110613-5] is_a: ZFA:0005076 ! primordial vasculature relationship: develops_from ZFA:0000477 ! posterior cardinal vein relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000031 ! Pharyngula:Prim-25 created_by: Ceri creation_date: 2011-12-27T12:45:30Z [Term] id: ZFA:0005606 name: cranial vault namespace: zebrafish_anatomy def: "Anatomical cluster of skeletal elements that forms the roof over the brain." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-060323-12] synonym: "calva" RELATED [] synonym: "calvaria" EXACT PLURAL [] synonym: "calvarium" EXACT [] synonym: "skullcap" RELATED [] is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001580 ! neurocranium relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2012-01-30T12:33:01Z [Term] id: ZFA:0005607 name: inter-parietal joint namespace: zebrafish_anatomy def: "Fibrous joint connecting the parietal bones." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-060323-12] synonym: "sagittal suture" RELATED [] xref: TAO:0005245 is_a: ZFA:0005156 ! fibrous joint relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005606 ! cranial vault relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2012-01-30T02:35:47Z [Term] id: ZFA:0005608 name: frontal-parietal joint namespace: zebrafish_anatomy def: "Fibrous joint connecting the frontal bone to the parietal bone. This joint remains patent in zebrafish throughout their lifetime." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-060323-12, ZFIN:ZDB-PUB-111111-5] synonym: "coronal suture" RELATED [] xref: TAO:0005255 is_a: ZFA:0005156 ! fibrous joint relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005606 ! cranial vault relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2012-01-30T02:37:39Z [Term] id: ZFA:0005609 name: supraoccipital-parietal joint namespace: zebrafish_anatomy def: "Fibrous joint connecting the supraoccipital to the parietal bone." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-060323-12] synonym: "lamdoid suture" RELATED [ZFIN:ZDB-PUB-060323-12] xref: TAO:0005264 is_a: ZFA:0005156 ! fibrous joint relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005606 ! cranial vault relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2012-01-30T02:48:16Z [Term] id: ZFA:0005610 name: synostosis namespace: zebrafish_anatomy def: "Joint in which the articulating bones are connected by bone." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-192] is_a: ZFA:0001596 ! joint relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2012-01-30T03:09:13Z [Term] id: ZFA:0005611 name: ectopterygoid-quadrate joint namespace: zebrafish_anatomy def: "Synostosis where the entopterygoid meets the quadrate." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-192] synonym: "ectopterygoid-quadrate synostosis" EXACT [] is_a: ZFA:0005610 ! synostosis relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2012-01-30T03:28:11Z [Term] id: ZFA:0005612 name: ectopterygoid-entopterygoid joint namespace: zebrafish_anatomy def: "Synostosis where the ectopterygoid meets the entopterygoid." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-192] synonym: "ectopterygoid-entopterygoid synostosis" EXACT [] is_a: ZFA:0005610 ! synostosis relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2012-01-30T03:31:09Z [Term] id: ZFA:0005613 name: basioccipital-prootic joint namespace: zebrafish_anatomy def: "Synchondrosis where the basioccipital meets the prootic anteriorly." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-192] is_a: ZFA:0005155 ! cartilaginous joint relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2012-01-31T03:48:07Z [Term] id: ZFA:0005614 name: entopterygoid-metapterygoid joint namespace: zebrafish_anatomy def: "Synostosis where the entopterygoid meets the metapterygoid. The metapterygoid has an anterodorsally projecting spine that meets the entopterygoid medially in a synostosis at its posteromedial edge." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-192] synonym: "entopterygoid-metapterygoid synostosis" EXACT [] is_a: ZFA:0005610 ! synostosis relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2012-01-30T03:45:11Z [Term] id: ZFA:0005615 name: metapterygoid-symplectic fenestra namespace: zebrafish_anatomy def: "Opening formed between the ventral border of the metapterygoid and the dorsal border of the symplectic." [ZFIN:ZDB-PUB-961014-192] is_a: ZFA:0005386 ! foramen relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2012-01-30T03:53:50Z [Term] id: ZFA:0005616 name: quadrate-entopterygoid joint namespace: zebrafish_anatomy def: "Synchondrosis where the quadrate meets the entopterygoid dorsally." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-192] is_a: ZFA:0005155 ! cartilaginous joint relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2012-01-30T03:57:23Z [Term] id: ZFA:0005617 name: lateral ethmoid-supraethmoid namespace: zebrafish_anatomy def: "Synostosis where anteromedial extensions of the lateral ethmoid project to meet the supraethmoid dorsally." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-192] is_a: ZFA:0005610 ! synostosis relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2012-02-09T11:27:00Z [Term] id: ZFA:0005618 name: anguloarticular-retroarticular joint namespace: zebrafish_anatomy def: "Cartilaginous joint that articulates the anguloarticular posteroventrally with the retroarticular." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-192] is_a: ZFA:0005155 ! cartilaginous joint relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2012-02-09T11:51:45Z [Term] id: ZFA:0005619 name: skeletal tissue namespace: zebrafish_anatomy def: "Connective tissue that functions in mechanical and structural support." [VSAO:curator] xref: VSAO:0000015 is_a: ZFA:0001632 ! portion of connective tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000434 ! skeletal system relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2012-02-09T03:59:26Z [Term] id: ZFA:0005620 name: endochondral element namespace: zebrafish_anatomy def: "A skeletal element that has the potential to participate in endochondral ossification, and may participate in intramembranous ossification." [VSAO:curator] xref: VSAO:0000139 is_a: ZFA:0005494 ! skeletal element relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2012-02-09T02:36:59Z [Term] id: ZFA:0005621 name: bone tissue namespace: zebrafish_anatomy def: "Skeletal tissue with a collagen-rich extracellular matrix vascularized, mineralized with hydroxyapatite and typically including osteocytes located in lacunae that communicate with one another by cell processes (in canaliculi). Bone is deposited by osteoblasts." [VSAO:curator] xref: VSAO:0000047 is_a: ZFA:0005619 ! skeletal tissue relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2012-02-09T04:00:34Z [Term] id: ZFA:0005622 name: cartilage tissue namespace: zebrafish_anatomy def: "Skeletal tissue that is avascular, rich in glycosaminoglycans (GAGs) and typically includes chondrocytes within isolated lacunae. Cartilage tissue is deposited by chondroblasts." [VSAO:curator] xref: VSAO:0000040 is_a: ZFA:0005619 ! skeletal tissue relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2012-02-09T04:01:46Z [Term] id: ZFA:0005623 name: odontoid tissue namespace: zebrafish_anatomy def: "Skeletal tissue that is part of the exoskeleton and derived from an odontogenic papilla." [VSAO:curator] xref: VSAO:0000063 is_a: ZFA:0005619 ! skeletal tissue relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2012-02-09T04:05:11Z [Term] id: ZFA:0005624 name: replacement element namespace: zebrafish_anatomy def: "Skeletal element that forms as a replacement or substitution of another element or tissue." [TAO:curator] is_a: ZFA:0005494 ! skeletal element relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2012-03-14T12:37:44Z [Term] id: ZFA:0005625 name: hypophyseal fenestra namespace: zebrafish_anatomy def: "Space enclosed by the trabeculae cranii. The anterior tip of the notochord extends into the posterior region of the hypophyseal fenestra." [ZFIN:ZDB-PUB-961014-192] synonym: "hypophyseal fenestrae" EXACT PLURAL [] xref: TAO:0005269 is_a: ZFA:0005386 ! foramen relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000032 ! Pharyngula:High-pec created_by: Ceri creation_date: 2012-03-15T03:52:38Z [Term] id: ZFA:0005626 name: hyomandibula-opercle joint namespace: zebrafish_anatomy def: "Synovial joint that articulates the hyomandibula and the opercle." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-192] xref: TAO:0005265 is_a: ZFA:0005153 ! synovial joint relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2012-03-15T04:19:50Z [Term] id: ZFA:0005627 name: hyomandibula-pterotic joint namespace: zebrafish_anatomy def: "Synovial joint that articulates the hyomandibula with the pterotic." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-192] is_a: ZFA:0005153 ! synovial joint relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2012-03-15T04:14:40Z [Term] id: ZFA:0005628 name: posttemporal fossa namespace: zebrafish_anatomy def: "Fossa where the exoccipital forms the medial portion and the epioccipital forms the lateral margin." [ZFIN:ZDB-PUB-961014-192] synonym: "temporal fossa" EXACT [] xref: TAO:0001753 is_a: ZFA:0005388 ! fossa relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2012-03-15T04:23:27Z [Term] id: ZFA:0005629 name: hyomandibular foramen namespace: zebrafish_anatomy def: "Foramen in the hyomandibula that allows passage of the anterior lateral line nerve and the facial nerve (cranial nerve VII). The foramen develop in the hyosymplectic. The hyomandibular foramen are paired." [ZFIN:ZDB-PUB-961014-192] synonym: "facial foramen" EXACT [] synonym: "facial nerve foramen" EXACT [ZFIN:ZDB-PUB-961014-192] synonym: "hyosymplectic foramen" EXACT [ZFIN:ZDB-PUB-961014-192] xref: TAO:0005275 is_a: ZFA:0005386 ! foramen relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2012-03-15T04:32:30Z [Term] id: ZFA:0005630 name: pterotic fossa namespace: zebrafish_anatomy def: "Fossa on the pterotic where the hyomandibula articulates." [ZFIN:ZDB-PUB-961014-192] xref: TAO:0005266 is_a: ZFA:0005388 ! fossa relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2012-03-15T04:35:40Z [Term] id: ZFA:0005631 name: preopercle horizontal limb-symplectic joint namespace: zebrafish_anatomy def: "Fibrous joint that articulates the posterior edge of the preopercle horizontal limb with the symplectic." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-192] xref: TAO:0005268 is_a: ZFA:0005156 ! fibrous joint relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2012-03-20T05:02:00Z [Term] id: ZFA:0005632 name: preopercle vertical limb-hyomandibula joint namespace: zebrafish_anatomy def: "Fibrous joint that articulates the anterior edge of the preopercle vertical limb and the hyomandibula." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-192] xref: TAO:0005278 is_a: ZFA:0005156 ! fibrous joint relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2012-03-20T05:04:12Z [Term] id: ZFA:0005633 name: lepidotrichium segment namespace: zebrafish_anatomy def: "Skeletal element which is part of lepidotrichium articulating with other lepidotrichium segments by lepidotrichium joints." [GOC:cvs, ORCiD:0000-0002-2244-7917] is_a: ZFA:0005494 ! skeletal element relationship: end ZFS:0000044 ! Adult relationship: overlaps ZFA:0005634 ! lepidotrichium joint relationship: part_of ZFA:0001554 ! lepidotrichium relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2012-04-06T02:21:01Z [Term] id: ZFA:0005634 name: lepidotrichium joint namespace: zebrafish_anatomy def: "Joint that articulates segments of the fin ray." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-000803-4] synonym: "intra-ray joint" EXACT [] is_a: ZFA:0001596 ! joint relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001554 ! lepidotrichium relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2012-04-06T02:22:29Z [Term] id: ZFA:0005635 name: predentine namespace: zebrafish_anatomy def: "Odontoid tissue formed of a loose matrix of collagen. The fibrils of the predentine are homogeneously distributed and preferentially oriented along the long axis of the tooth. They are of variable thickness, measuring from 50 to 100 nm in diameter." [ZFIN:ZDB-PUB-001208-4] synonym: "pre-dentine" EXACT [] synonym: "predentin" EXACT [] is_a: ZFA:0005623 ! odontoid tissue relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2012-04-19T02:42:59Z [Term] id: ZFA:0005636 name: interossicular ligament namespace: zebrafish_anatomy def: "Ligament that connects the intercalarium to the anterior process of the tripus and the scaphium." [ZFIN:ZDB-PUB-031103-13, ZFIN:ZDB-PUB-120214-1] is_a: ZFA:0001675 ! ligament relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001188 ! Weberian apparatus relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2012-04-19T04:04:31Z [Term] id: ZFA:0005637 name: intercostal ligament namespace: zebrafish_anatomy def: "Ligament that connects one rib to another." [TAO:curator] xref: TAO:0001972 is_a: ZFA:0001675 ! ligament relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2012-04-19T04:20:23Z [Term] id: ZFA:0005638 name: scapulo-vertebral ligament namespace: zebrafish_anatomy def: "Ligaments that runs from the parapophyses of the anteriormost centrum to the exoccipital. There are two scapulo-vertebral ligaments in zebrafish." [ZFIN:ZDB-PUB-961014-192] synonym: "Baudelot's ligaments" EXACT [] synonym: "scapulo-vertebral ligaments" EXACT PLURAL [] is_a: ZFA:0001675 ! ligament relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2012-04-24T12:23:51Z [Term] id: ZFA:0005639 name: supracleithrum-vertebral ligament namespace: zebrafish_anatomy def: "Ligament that runs from the ventral third of the supracleithrum to the exoccipital." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-192] synonym: "Baudelot's ligament" EXACT [] is_a: ZFA:0005638 ! scapulo-vertebral ligament relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2012-04-24T12:25:49Z [Term] id: ZFA:0005640 name: cleithrum-vertebral ligament namespace: zebrafish_anatomy def: "Ligament that run from the dorsal tip of the cleithrum to the exoccipital." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-192] synonym: "Baudelot's ligament" EXACT [] is_a: ZFA:0005638 ! scapulo-vertebral ligament relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2012-04-24T12:26:31Z [Term] id: ZFA:0005641 name: maxillo-mandibular ligament namespace: zebrafish_anatomy def: "Ligament that connects the dentary to the maxilla." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-192] is_a: ZFA:0001675 ! ligament relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2012-04-24T01:00:12Z [Term] id: ZFA:0005642 name: maxillo-rostroid ligament namespace: zebrafish_anatomy def: "Ligament that connects the rostral process of the maxilla to the kinethmoid." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-192] is_a: ZFA:0001675 ! ligament relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2012-04-24T01:00:52Z [Term] id: ZFA:0005643 name: premaxillo-rostroid ligament namespace: zebrafish_anatomy def: "Ligament that, in the adult, attaches the premaxilla to its counterpart at the midline and the kinethmoid posterodorsally." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-192] is_a: ZFA:0001675 ! ligament relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2012-04-24T01:03:14Z [Term] id: ZFA:0005644 name: ceratobranchial 5 ligament namespace: zebrafish_anatomy def: "The ligament that connects the anteroventral tips of ceratobranchials 5 medially." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-192] is_a: ZFA:0001675 ! ligament relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2012-04-24T01:03:58Z [Term] id: ZFA:0005645 name: supracleithrum-intercalar ligament namespace: zebrafish_anatomy def: "Short ligament that runs from the hooked anterior end of the supracleithrum to the intercalar." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-192] is_a: ZFA:0001675 ! ligament relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2012-04-24T01:04:45Z [Term] id: ZFA:0005646 name: preopercle-retroarticular ligament namespace: zebrafish_anatomy def: "Ligament that connects the preopercle to the retroarticular anteroventrally." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-192] is_a: ZFA:0001675 ! ligament relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2012-04-24T01:05:19Z [Term] id: ZFA:0005647 name: tendon namespace: zebrafish_anatomy def: "Dense regular connective tissue that connects muscle to bone." [VSAO:curator] xref: VSAO:0000073 is_a: ZFA:0001632 ! portion of connective tissue relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2012-04-24T02:02:48Z [Term] id: ZFA:0005648 name: mesethmoid-lateral ethmoid joint namespace: zebrafish_anatomy def: "Joint that articulates the mesethmoid and lateral ethmoid. Mesethmoid-lateral ethmoid joint is paired." [TAO:curator, ZFIN:ZDB-PUB-961014-192] xref: TAO:0001679 is_a: ZFA:0005610 ! synostosis relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2012-04-24T05:24:57Z [Term] id: ZFA:0005649 name: mesethmoid-vomer joint namespace: zebrafish_anatomy def: "Joint that articulates the mesethmoid and vomer. Mesethmoid-vomer joint is unpaired." [TAO:curator] xref: TAO:0001680 is_a: ZFA:0005610 ! synostosis relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2012-04-24T05:26:11Z [Term] id: ZFA:0005650 name: primitive pectoral fin adductor namespace: zebrafish_anatomy def: "Adductor that originates at the cleithrum the muscle fibers run in sheets along the endoskeletal disk extending dorsally and caudally from its base. Distally, the muscles insert onto the fin membrane." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-050920-7] is_a: ZFA:0005268 ! adductor muscle relationship: end ZFS:0000039 ! Larval:Days 7-13 relationship: part_of ZFA:0000563 ! pectoral fin musculature relationship: start ZFS:0000031 ! Pharyngula:Prim-25 created_by: Ceri creation_date: 2012-05-08T03:51:06Z [Term] id: ZFA:0005651 name: primitive pectoral fin abductor namespace: zebrafish_anatomy def: "Abductor that originates at the cleithrum the muscle fibers run in sheets along the endoskeletal disk extending dorsally and caudally from its base. Distally, the muscles insert onto the fin membrane." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-050920-7] is_a: ZFA:0005269 ! abductor muscle relationship: end ZFS:0000040 ! Larval:Days 14-20 relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2012-05-08T03:59:41Z [Term] id: ZFA:0005652 name: aponeurosis namespace: zebrafish_anatomy def: "Layers of broad flat tendons." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "aponeuroses" EXACT PLURAL [] is_a: ZFA:0005647 ! tendon relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2012-06-15T10:41:21Z [Term] id: ZFA:0005653 name: vagal sensory zone namespace: zebrafish_anatomy def: "Portion of tissue in the vagal lobe that contains GABAergic sensory interneurons." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-120409-2] is_a: ZFA:0000297 ! vagal lobe is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001101 ! gustatory system relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2012-07-03T01:25:32Z [Term] id: ZFA:0005654 name: blood plasma namespace: zebrafish_anatomy def: "Portion of organism substance that is the liquid matrix of blood." [GOC:cvs, ORCiD:0000-0002-2244-7917] is_a: ZFA:0001487 ! portion of organism substance relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000007 ! blood relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2012-09-25T10:30:55Z [Term] id: ZFA:0005655 name: anterior ventromedial process of autopalatine namespace: zebrafish_anatomy def: "Endochondral process of the autopalatine that forms the socket of the autopalatine-preethmoid joint." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-192] is_a: ZFA:0001637 ! bony projection relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000620 ! autopalatine relationship: start ZFS:0000042 ! Juvenile:Days 30-44 created_by: Ceri creation_date: 2012-09-25T03:42:27Z [Term] id: ZFA:0005656 name: autopalatine-preethmoid joint namespace: zebrafish_anatomy def: "Synovial, ball and socket joint that articulates the autopalatine and the preethmoid." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-192] is_a: ZFA:0005153 ! synovial joint relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2012-09-25T03:47:27Z [Term] id: ZFA:0005657 name: anterior lateral process of autopalatine namespace: zebrafish_anatomy def: "Endochondral bone part of autopalatine that extends towards the first infraorbital." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-192] is_a: ZFA:0001637 ! bony projection relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000620 ! autopalatine relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2012-09-25T03:55:15Z [Term] id: ZFA:0005658 name: lymph namespace: zebrafish_anatomy def: "Portion of organism substance found in the lymphatic system. Lymph usually consists of interstitial fluid that has made its way into the lymphatic system." [GOC:cvs, ORCiD:0000-0002-2244-7917, UBERON:curator] is_a: ZFA:0001487 ! portion of organism substance relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000385 ! lymphatic system relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2012-11-28T03:32:48Z [Term] id: ZFA:0005659 name: intestinal lamina propria mucosa namespace: zebrafish_anatomy def: "Thin layer of loose connective tissue which lies beneath the intestinal epithelium. The intestinal lamina propria is less complex then the corresponding mammalian tissue." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-050120-6] is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005660 ! intestinal mucosa relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-03-07T12:15:28Z [Term] id: ZFA:0005660 name: intestinal mucosa namespace: zebrafish_anatomy def: "Multi-tissue structure of the intestine comprising of the intestinal epithelium and the intestinal lamina propria mucosa." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-050120-6] is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001338 ! intestine relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-03-07T12:18:22Z [Term] id: ZFA:0005661 name: olfactory bulb glomerulus namespace: zebrafish_anatomy def: "Multi-tissue structure part of the olfactory bulb that is roughly spheroidal and encircled by olfactory sensory neuron axons that formed an anatomically distinct stalk connected to the olfactory nerve." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-120516-14] is_a: ZFA:0001488 ! multi-tissue structure relationship: develops_from ZFA:0005668 ! olfactory bulb protoglomerulus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000357 ! glomerular layer relationship: start ZFS:0000033 ! Hatching:Long-pec created_by: Ceri creation_date: 2013-03-19T02:15:11Z [Term] id: ZFA:0005662 name: spinal nerve namespace: zebrafish_anatomy def: "Bilaterally-paired nerve connecting each segment of the spinal cord to the limbs and organs." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-1247, ZFIN:ZDB-PUB-961014-814] is_a: ZFA:0007009 ! nerve relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000142 ! peripheral nervous system relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-03-19T04:04:36Z [Term] id: ZFA:0005663 name: dorsal spinal nerve namespace: zebrafish_anatomy def: "Dorsal branch of the spinal nerve, coursing dorsally and caudally between the muscle and the vertebrae. It remains in the center of the muscle segment and could be followed to the dorsal aspect of the muscle. MiP primary motoneuron axons extend in this branch." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-1247, ZFIN:ZDB-PUB-961014-814] synonym: "dorsal nerve" EXACT [] is_a: ZFA:0005662 ! spinal nerve relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-03-19T04:08:16Z [Term] id: ZFA:0005664 name: lateral spinal nerve namespace: zebrafish_anatomy def: "Ventral branch of the spinal nerve that projects toward the lateral surface of the myotome, initially extending parallel to the horizontal myoseptum. RoP primary motoneuron axons extend in this branch." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-1247, ZFIN:ZDB-PUB-961014-814] synonym: "lateral nerve" EXACT [] is_a: ZFA:0005662 ! spinal nerve relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-03-19T04:09:27Z [Term] id: ZFA:0005665 name: ventral spinal nerve namespace: zebrafish_anatomy def: "Ventral spinal nerve branch that projects to the ventral myotome. The axon of the CaP primary motoneuron extends in this branch." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-1247] synonym: "ventral nerve" EXACT [] is_a: ZFA:0005662 ! spinal nerve relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-03-19T04:11:19Z [Term] id: ZFA:0005666 name: ventral spinal nerve septal branch namespace: zebrafish_anatomy def: "Ventral spinal nerve sub-branch that runs near the rostral end of the myotome near the vertical myoseptum." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-1247] is_a: ZFA:0005665 ! ventral spinal nerve relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-03-19T04:13:53Z [Term] id: ZFA:0005667 name: ventral spinal nerve median branch namespace: zebrafish_anatomy def: "Ventral spinal nerve sub-branch that projects ventrally in the rostro-caudal center of the myotome. The axon of the CaP primary motoneuron extends in this branch." [ZFIN:ZDB-PUB-961014-1247, ZFIN:ZDB-PUB-961014-814] is_a: ZFA:0005665 ! ventral spinal nerve relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-03-19T04:14:46Z [Term] id: ZFA:0005668 name: olfactory bulb protoglomerulus namespace: zebrafish_anatomy def: "Multi-tissue structure part of the olfactory bulb comprised of ciliated and microvillous olfactory sensory neurons projections that form specialized neuropilar regions comprised of olfactory sensor axons and the dendrites of olfactory bulb neurons." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-120330-2] synonym: "glomerular precursors" EXACT [] is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000357 ! glomerular layer relationship: start ZFS:0000033 ! Hatching:Long-pec created_by: Ceri creation_date: 2013-04-29T11:55:43Z [Term] id: ZFA:0005669 name: lateral protoglomerulus namespace: zebrafish_anatomy def: "Protoglomeruli in the lateral region of the glomerular layer of the olfactory bulb." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-050617-6, ZFIN:ZDB-PUB-980729-35] synonym: "lateral protoglomeruli" EXACT PLURAL [] is_a: ZFA:0005668 ! olfactory bulb protoglomerulus relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0005675 ! lateral zone olfactory bulb relationship: start ZFS:0000033 ! Hatching:Long-pec created_by: Ceri creation_date: 2013-04-29T01:58:36Z [Term] id: ZFA:0005670 name: central zone protoglomerulus namespace: zebrafish_anatomy def: "Protoglomeruli in the central zone of the glomerular layer of the olfactory bulb. The central zone protoglomeruli have somewhat indistinct boundaries." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-980729-35] is_a: ZFA:0005668 ! olfactory bulb protoglomerulus relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0005673 ! central zone olfactory bulb relationship: start ZFS:0000033 ! Hatching:Long-pec created_by: Ceri creation_date: 2013-04-29T02:06:50Z [Term] id: ZFA:0005671 name: medial protoglomerulus namespace: zebrafish_anatomy def: "Protoglomeruli in the medial region of the glomerular layer of the olfactory bulb." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-050617-6, ZFIN:ZDB-PUB-980729-35] is_a: ZFA:0005668 ! olfactory bulb protoglomerulus relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0005676 ! medial zone olfactory bulb relationship: start ZFS:0000033 ! Hatching:Long-pec created_by: Ceri creation_date: 2013-04-29T02:10:49Z [Term] id: ZFA:0005672 name: ventral posterior glomerulus namespace: zebrafish_anatomy def: "Single large glomerulus located in the ventral posterior region of the maturing glomerular layer of the olfactory bulb." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-980729-35] synonym: "VPG" RELATED [] is_a: ZFA:0005668 ! olfactory bulb protoglomerulus relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000035 ! Larval:Protruding-mouth created_by: Ceri creation_date: 2013-04-29T02:17:00Z [Term] id: ZFA:0005673 name: central zone olfactory bulb namespace: zebrafish_anatomy def: "Central region of the glomerular layer of the olfactory bulb." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-980729-35] is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000357 ! glomerular layer relationship: start ZFS:0000033 ! Hatching:Long-pec created_by: Ceri creation_date: 2013-04-29T02:25:20Z [Term] id: ZFA:0005674 name: dorsal zone olfactory bulb namespace: zebrafish_anatomy def: "Dorsal region of the glomerular layer of the olfactory bulb." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-980729-35] is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000357 ! glomerular layer relationship: start ZFS:0000035 ! Larval:Protruding-mouth created_by: Ceri creation_date: 2013-04-29T02:26:28Z [Term] id: ZFA:0005675 name: lateral zone olfactory bulb namespace: zebrafish_anatomy def: "Lateral region of the glomerular layer of the olfactory bulb. The lateral region of the olfactory bulb consisted of morphologically diverse glomeruli and a diffuse aggregate of OSN axons, the lateral plexus." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-980729-35] is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000357 ! glomerular layer relationship: start ZFS:0000033 ! Hatching:Long-pec created_by: Ceri creation_date: 2013-04-29T02:27:13Z [Term] id: ZFA:0005676 name: medial zone olfactory bulb namespace: zebrafish_anatomy def: "Medial region of the glomerular layer of the olfactory bulb." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-980729-35] is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000357 ! glomerular layer relationship: start ZFS:0000033 ! Hatching:Long-pec created_by: Ceri creation_date: 2013-04-29T02:28:47Z [Term] id: ZFA:0005677 name: ventral zone olfactory bulb namespace: zebrafish_anatomy def: "Ventral region of the glomerular layer of the olfactory bulb." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-980729-35] is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000357 ! glomerular layer relationship: start ZFS:0000035 ! Larval:Protruding-mouth created_by: Ceri creation_date: 2013-04-29T02:29:39Z [Term] id: ZFA:0005678 name: dorsolateral zone olfactory bulb namespace: zebrafish_anatomy def: "Lateral region of the dorsal zone of the olfactory bulb. Glomeruli in this zone are tightly clustered in both male and female fish." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-050523-2, ZFIN:ZDB-PUB-101222-42, ZFIN:ZDB-PUB-120516-14] is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005674 ! dorsal zone olfactory bulb relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-05-06T04:46:27Z [Term] id: ZFA:0005679 name: ventromedial zone olfactory bulb namespace: zebrafish_anatomy def: "Medial portion of the ventral region of the glomerular layer of the olfactory bulb." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-120516-14] is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005677 ! ventral zone olfactory bulb relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-05-07T09:59:45Z [Term] id: ZFA:0005680 name: ventroanterior zone of olfactory bulb namespace: zebrafish_anatomy def: "Anterior portion of the ventral region of the glomerular layer of the olfactory bulb. In the ventroanterior zone there are typically seven small glomeruli located 11-20 micrometers beneath the superficial axon bundles The ganglion differed conspicuously in sizes, shapes, and distribution, and were not individually identifiable." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-120516-14] synonym: "vaGx" RELATED [] is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005677 ! ventral zone olfactory bulb relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-05-07T10:03:15Z [Term] id: ZFA:0005681 name: ventroposterior zone olfactory bulb namespace: zebrafish_anatomy def: "Posterior portion of the ventral region of the glomerular layer of the olfactory bulb." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-120516-14] is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005677 ! ventral zone olfactory bulb relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-05-07T10:22:38Z [Term] id: ZFA:0005682 name: mediodorsal zone of the olfactory bulb namespace: zebrafish_anatomy def: "Dorsal part of the medial region of the glomerular layer of the olfactory bulb." [GOC:cvs, ORCiD:0000-0002-2244-7917] is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005676 ! medial zone olfactory bulb relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-05-07T01:37:59Z [Term] id: ZFA:0005683 name: anteromedial zone olfactory bulb namespace: zebrafish_anatomy def: "Anterior portion of the medial region of the glomerular layer of the olfactory bulb." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "medial anterior zone olfactory bulb" EXACT [] is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005676 ! medial zone olfactory bulb relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-05-07T01:39:48Z [Term] id: ZFA:0005684 name: posteromedial glomerulus namespace: zebrafish_anatomy def: "Glomerulus located between ventromedial and medial olfactory bulb surfaces. The mpG is generally elongated and innervated by a single thick axon." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-050523-2, ZFIN:ZDB-PUB-961014-62] synonym: "mpG" EXACT [] is_a: ZFA:0005661 ! olfactory bulb glomerulus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005676 ! medial zone olfactory bulb relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-05-07T01:48:45Z [Term] id: ZFA:0005685 name: dG1 namespace: zebrafish_anatomy def: "Glomerulus located in the dorsal zone of the olfactory bulb. It is located in a stereotypic position near the posterior edge of the dorsal glomerular zone and stains with anti-calretinin." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-120516-14] synonym: "dorsal glomerulus 1" EXACT [] is_a: ZFA:0005661 ! olfactory bulb glomerulus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005674 ! dorsal zone olfactory bulb relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-05-21T02:25:26Z [Term] id: ZFA:0005686 name: dlG1 namespace: zebrafish_anatomy def: "Glomerulus located in the dorsolateral zone of the olfactory bulb. Dorsalmost of glomeruli located along the caudal edge of the olfactory bulb." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-120516-14] synonym: "dorsolateral glomerulus 1" EXACT [] is_a: ZFA:0005661 ! olfactory bulb glomerulus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005678 ! dorsolateral zone olfactory bulb relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-05-21T02:34:12Z [Term] id: ZFA:0005687 name: dlG2 namespace: zebrafish_anatomy def: "Glomerulus located in the dorsolateral zone of the olfactory bulb. Ventral to dlG1 and located along the caudal edge of the olfactory bulb." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-120516-14] synonym: "dorsolateral glomerulus 2" EXACT [] is_a: ZFA:0005661 ! olfactory bulb glomerulus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005678 ! dorsolateral zone olfactory bulb relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-05-21T02:38:24Z [Term] id: ZFA:0005688 name: dlG3 namespace: zebrafish_anatomy def: "Glomerulus located in the dorsolateral zone of the olfactory bulb. Ventral to dlG2 and located along the caudal edge of the olfactory bulb." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-120516-14] synonym: "dorsolateral glomerulus 3" EXACT [] is_a: ZFA:0005661 ! olfactory bulb glomerulus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005678 ! dorsolateral zone olfactory bulb relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-05-21T02:40:59Z [Term] id: ZFA:0005689 name: dlG4 namespace: zebrafish_anatomy def: "Glomerulus located in the dorsolateral zone of the olfactory bulb. Ventral to dlG3 and located along the caudal edge of the olfactory bulb." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-120516-14] synonym: "dorsolateral glomerulus 4" RELATED [] is_a: ZFA:0005661 ! olfactory bulb glomerulus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005678 ! dorsolateral zone olfactory bulb relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-05-21T02:42:35Z [Term] id: ZFA:0005690 name: dlG5 namespace: zebrafish_anatomy def: "Glomerulus located in the dorsolateral zone of the olfactory bulb. Ventral to dlG4, and located along the caudal edge of the olfactory bulb." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-120516-14] synonym: "dorsolateral glomerulus 5" RELATED [] is_a: ZFA:0005661 ! olfactory bulb glomerulus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005678 ! dorsolateral zone olfactory bulb relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-05-21T02:45:36Z [Term] id: ZFA:0005691 name: vmG1 namespace: zebrafish_anatomy def: "Glomerulus located in the ventromedial zone of the olfactory bulb. Stains strongly with anti-calretinin. Anteriormost of the triplet of glomeruli strongly expressing calretinin." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-120516-14] synonym: "ventral triplet glomerulus 1" EXACT [] synonym: "ventromedial glomerulus 1" EXACT [] is_a: ZFA:0005661 ! olfactory bulb glomerulus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005679 ! ventromedial zone olfactory bulb relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-05-21T03:10:31Z [Term] id: ZFA:0005692 name: vmG2 namespace: zebrafish_anatomy def: "Glomerulus located in the ventromedial zone of the olfactory bulb. Stains strongly with anti-calretinin. Posterior to vmG1 in the triplet of glomeruli strongly expressing calretinin." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-120516-14] synonym: "ventral triplet glomerulus 2" EXACT [] synonym: "ventromedial glomerulus 2" EXACT [] is_a: ZFA:0005661 ! olfactory bulb glomerulus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005679 ! ventromedial zone olfactory bulb relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-05-21T03:17:25Z [Term] id: ZFA:0005693 name: vmG3 namespace: zebrafish_anatomy def: "Glomerulus located in the ventromedial zone of the olfactory bulb. Stains strongly with anti-calretinin. Posteriormost glomerulus in the triplet of glomeruli strongly expressing calretinin." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-120516-14] synonym: "ventral triplet glomerulus 3" EXACT [] synonym: "ventromedial glomerulus 3" EXACT [] is_a: ZFA:0005661 ! olfactory bulb glomerulus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005679 ! ventromedial zone olfactory bulb relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-05-21T03:19:23Z [Term] id: ZFA:0005694 name: vmG4 namespace: zebrafish_anatomy def: "Glomerulus located in the ventromedial zone of the olfactory bulb. Posterior to the triplet of ventromedial glomeruli strongly expressing calretinin." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-120516-14] synonym: "ventromedial glomerulus 4" EXACT [] is_a: ZFA:0005661 ! olfactory bulb glomerulus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005679 ! ventromedial zone olfactory bulb relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-05-21T03:24:43Z [Term] id: ZFA:0005695 name: vmG5 namespace: zebrafish_anatomy def: "Glomerulus located in the ventromedial zone of the olfactory bulb. Posterior to vmG4." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-120516-14] synonym: "ventromedial glomerulus 5" EXACT [] is_a: ZFA:0005661 ! olfactory bulb glomerulus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005679 ! ventromedial zone olfactory bulb relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-05-21T03:26:20Z [Term] id: ZFA:0005696 name: vmG6 namespace: zebrafish_anatomy def: "Glomerulus located in the ventromedial zone of the olfactory bulb. Posterior to vmG4 adjacent to vmG5." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-120516-14] synonym: "ventromedial glomerulus 6" EXACT [] is_a: ZFA:0005661 ! olfactory bulb glomerulus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005679 ! ventromedial zone olfactory bulb relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-05-21T03:27:26Z [Term] id: ZFA:0005697 name: vmG7 namespace: zebrafish_anatomy def: "Glomerulus located in the ventromedial zone of the olfactory bulb. vmG7 is located anteriorly to vmG1-3 and vmG4-6." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-120516-14] synonym: "ventromedial glomerulus 7" EXACT [] is_a: ZFA:0005661 ! olfactory bulb glomerulus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005679 ! ventromedial zone olfactory bulb relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-05-21T03:31:32Z [Term] id: ZFA:0005698 name: vmGx namespace: zebrafish_anatomy def: "Group of glomerulus located in the ventromedial zone of the olfactory bulb The vmGx group, is located 10-50 micrometers from the ventral surface of the olfactory bulb. And were located anywhere between the posteroventral and anteroventral regions of the olfactory bulb. It was not possible to unambiguously identify the vmGx because they displayed varying distributions and numbers in the olfactory bulbs of different animals." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-120516-14] synonym: "ventromedial glomerular group x" EXACT [] is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005679 ! ventromedial zone olfactory bulb relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-05-21T03:34:17Z [Term] id: ZFA:0005699 name: vmGy namespace: zebrafish_anatomy def: "Group of glomerulus located in the ventromedial zone of the olfactory bulb. A cluster of comparatively small glomeruli located near the midline between the two olfactory bulbs The glomeruli in the vmGy were among the smallest glomeruli in the olfactory bulb." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-120516-14] synonym: "ventromedial glomerular group y" EXACT [] is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005679 ! ventromedial zone olfactory bulb relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-05-21T03:37:11Z [Term] id: ZFA:0005700 name: vpG1 namespace: zebrafish_anatomy def: "One of two large glomeruli located in the ventroposterior zone olfactory bulb." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-120516-14] synonym: "ventroposterior glomerulus 1" EXACT [] is_a: ZFA:0005661 ! olfactory bulb glomerulus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005681 ! ventroposterior zone olfactory bulb relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-05-21T03:46:05Z [Term] id: ZFA:0005701 name: vpG2 namespace: zebrafish_anatomy def: "One of two large glomeruli located in the ventroposterior zone olfactory bulb." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-120516-14] synonym: "ventroposterior glomerulus 2" EXACT [] is_a: ZFA:0005661 ! olfactory bulb glomerulus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005681 ! ventroposterior zone olfactory bulb relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-05-21T03:47:52Z [Term] id: ZFA:0005702 name: lg1 namespace: zebrafish_anatomy def: "Glomerulus located in the lateral zone of the olfactory bulb. LG1 is surrounded by a diffuse aggregate of OSN axons." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-120516-14] synonym: "glomerulus 1 of the lateral chain" EXACT [] synonym: "lateral glomerulus 1" EXACT [] is_a: ZFA:0005661 ! olfactory bulb glomerulus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005675 ! lateral zone olfactory bulb relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-05-21T04:11:01Z [Term] id: ZFA:0005703 name: lG2 namespace: zebrafish_anatomy def: "Glomerulus located in the lateral zone of the olfactory bulb." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "glomerulus 2 of the lateral chain" EXACT [] synonym: "lateral glomerulus 2" EXACT [] synonym: "lcG2 " EXACT [] is_a: ZFA:0005661 ! olfactory bulb glomerulus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005675 ! lateral zone olfactory bulb relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-05-21T04:15:43Z [Term] id: ZFA:0005704 name: lG3 namespace: zebrafish_anatomy def: "Glomerulus located in the lateral zone of the olfactory bulb." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-120516-14] synonym: "glomerulus 3 of the lateral chain" EXACT [] synonym: "lateral glomerulus 3" EXACT [] synonym: "lcG3" EXACT [] is_a: ZFA:0005661 ! olfactory bulb glomerulus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005675 ! lateral zone olfactory bulb relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-05-21T04:18:03Z [Term] id: ZFA:0005705 name: lG4 namespace: zebrafish_anatomy def: "Glomerulus located in the lateral zone of the olfactory bulb." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "glomerulus 4 of the lateral chain" EXACT [] synonym: "lateral glomerulus 4" EXACT [] synonym: "lcG4" RELATED [] is_a: ZFA:0005661 ! olfactory bulb glomerulus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005675 ! lateral zone olfactory bulb relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-05-22T11:07:13Z [Term] id: ZFA:0005706 name: lg5 namespace: zebrafish_anatomy def: "Glomerulus located in the lateral zone of the olfactory bulb. LG5 is surrounded by a diffuse aggregate of OSN axons." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-120516-14] synonym: "glomerulus 5 of the lateral chain" EXACT [] synonym: "lateral glomerulus 5" RELATED [] synonym: "lcG5 " EXACT [] is_a: ZFA:0005661 ! olfactory bulb glomerulus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005675 ! lateral zone olfactory bulb relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-05-22T11:11:41Z [Term] id: ZFA:0005707 name: lGx namespace: zebrafish_anatomy def: "Group of glomerulus located in the lateral region of the olfactory bulb. The glomeruli that compose lGx are smaller than the lG1-6 and varied in shape, sizes, and locations between olfactory bulbs of the same and different animals. The lGx were located either along the ventral edge of the lateral group or below the lateral olfactory bulb surface." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-120516-14] is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005675 ! lateral zone olfactory bulb relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-05-22T11:16:21Z [Term] id: ZFA:0005708 name: lg6 namespace: zebrafish_anatomy def: "Glomerulus located in the lateral zone of the olfactory bulb. LG6 is located on the ventroposterior edge of the lateral group." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-120516-14] synonym: "lateral glomerulus 6" EXACT [] synonym: "lvpG" EXACT [] is_a: ZFA:0005661 ! olfactory bulb glomerulus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005675 ! lateral zone olfactory bulb relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-05-22T11:19:31Z [Term] id: ZFA:0005709 name: mdG1 namespace: zebrafish_anatomy def: "Glomerulus located in the mediodorsal zone of the olfactory bulb." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "mdpG1" EXACT [] synonym: "mediodorsal glomerulus 1" EXACT [] synonym: "mediodorsal posterior glomerulus 1 " EXACT [] is_a: ZFA:0005661 ! olfactory bulb glomerulus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005682 ! mediodorsal zone of the olfactory bulb relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-05-22T11:49:49Z [Term] id: ZFA:0005710 name: mdG2 namespace: zebrafish_anatomy def: "Glomerulus located in the mediodorsal zone of the olfactory bulb." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "mdpG2 " EXACT [] synonym: "mediodorsal glomerulus 2" EXACT [] synonym: "mediodorsal posterior glomerulus 2" EXACT [] is_a: ZFA:0005661 ! olfactory bulb glomerulus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005682 ! mediodorsal zone of the olfactory bulb relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-05-22T11:53:33Z [Term] id: ZFA:0005711 name: mdG3 namespace: zebrafish_anatomy def: "Glomerulus located in the mediodorsal zone of the olfactory bulb." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "mediodorsal glomerulus 3" EXACT [] is_a: ZFA:0005661 ! olfactory bulb glomerulus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005682 ! mediodorsal zone of the olfactory bulb relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-05-22T11:54:46Z [Term] id: ZFA:0005712 name: mdG4 namespace: zebrafish_anatomy def: "Glomerulus located in the mediodorsal zone of the olfactory bulb." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "mediodorsal glomerulus 4" EXACT [] is_a: ZFA:0005661 ! olfactory bulb glomerulus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005682 ! mediodorsal zone of the olfactory bulb relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-05-22T11:56:36Z [Term] id: ZFA:0005713 name: mdG5 namespace: zebrafish_anatomy def: "Glomerulus located in the mediodorsal zone of the olfactory bulb." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "mediodorsal glomerulus 5" EXACT [] is_a: ZFA:0005661 ! olfactory bulb glomerulus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005682 ! mediodorsal zone of the olfactory bulb relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-05-22T11:57:20Z [Term] id: ZFA:0005714 name: mdG6 namespace: zebrafish_anatomy def: "Glomerulus located in the mediodorsal zone of the olfactory bulb." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "mediodorsal glomerulus 6" EXACT [] is_a: ZFA:0005661 ! olfactory bulb glomerulus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005682 ! mediodorsal zone of the olfactory bulb relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-05-22T11:58:01Z [Term] id: ZFA:0005715 name: maG1 namespace: zebrafish_anatomy def: "Glomerulus located in the anteromedial zone of the olfactory bulb." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "maG" RELATED [] synonym: "medial anterior glomerulus 1" EXACT [] is_a: ZFA:0005661 ! olfactory bulb glomerulus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005683 ! anteromedial zone olfactory bulb relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-05-22T12:02:52Z [Term] id: ZFA:0005716 name: maGx namespace: zebrafish_anatomy def: "Group of small glomeruli located in the anteromedial zone of the olfactory bulb. The arrangements of glomeruli maGx varies between animals and they can't be identified as individual units." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-120516-14] synonym: "medial anterior glomeruli " RELATED [] is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005683 ! anteromedial zone olfactory bulb relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-05-22T12:04:40Z [Term] id: ZFA:0005717 name: lateral protoglomerulus 1 namespace: zebrafish_anatomy def: "Protoglomeruli in the lateral region of the glomerular layer of the olfactory bulb." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-980729-35] synonym: "LG1" RELATED [] is_a: ZFA:0005669 ! lateral protoglomerulus relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0005675 ! lateral zone olfactory bulb relationship: start ZFS:0000035 ! Larval:Protruding-mouth created_by: Ceri creation_date: 2013-05-22T03:52:20Z [Term] id: ZFA:0005718 name: lateral protoglomerulus 2 namespace: zebrafish_anatomy def: "Protoglomeruli in the lateral region of the glomerular layer of the olfactory bulb." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-980729-35] synonym: "LG2" RELATED [] is_a: ZFA:0005669 ! lateral protoglomerulus relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0005675 ! lateral zone olfactory bulb relationship: start ZFS:0000035 ! Larval:Protruding-mouth created_by: Ceri creation_date: 2013-05-22T04:06:52Z [Term] id: ZFA:0005719 name: lateral protoglomerulus 3 namespace: zebrafish_anatomy def: "Protoglomeruli in the lateral region of the glomerular layer of the olfactory bulb." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-980729-35] synonym: "LG3" RELATED [] is_a: ZFA:0005669 ! lateral protoglomerulus relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0005675 ! lateral zone olfactory bulb relationship: start ZFS:0000035 ! Larval:Protruding-mouth created_by: Ceri creation_date: 2013-05-22T04:08:18Z [Term] id: ZFA:0005720 name: lateral protoglomerulus 4 namespace: zebrafish_anatomy def: "Protoglomeruli in the lateral region of the glomerular layer of the olfactory bulb." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-980729-35] synonym: "LG4" RELATED [] is_a: ZFA:0005669 ! lateral protoglomerulus relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0005675 ! lateral zone olfactory bulb relationship: start ZFS:0000035 ! Larval:Protruding-mouth created_by: Ceri creation_date: 2013-05-22T04:08:37Z [Term] id: ZFA:0005721 name: central zone protoglomerulus 1 namespace: zebrafish_anatomy def: "Protoglomeruli in the central zone of the glomerular layer of the olfactory bulb. The central zone protoglomeruli have somewhat indistinct boundaries." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-980729-35] synonym: "CZ1" EXACT [] is_a: ZFA:0005670 ! central zone protoglomerulus relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0005673 ! central zone olfactory bulb relationship: start ZFS:0000035 ! Larval:Protruding-mouth created_by: Ceri creation_date: 2013-05-22T05:13:36Z [Term] id: ZFA:0005722 name: central zone protoglomerulus 2 namespace: zebrafish_anatomy def: "Protoglomeruli in the central zone of the glomerular layer of the olfactory bulb. The central zone protoglomeruli have somewhat indistinct boundaries." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-980729-35] synonym: "CZ2" EXACT [] is_a: ZFA:0005670 ! central zone protoglomerulus relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0005673 ! central zone olfactory bulb relationship: start ZFS:0000035 ! Larval:Protruding-mouth created_by: Ceri creation_date: 2013-05-22T05:20:35Z [Term] id: ZFA:0005723 name: central zone protoglomerulus 3 namespace: zebrafish_anatomy def: "Protoglomeruli in the central zone of the glomerular layer of the olfactory bulb. The central zone protoglomeruli have somewhat indistinct boundaries." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-980729-35] synonym: "CZ3" EXACT [] is_a: ZFA:0005670 ! central zone protoglomerulus relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0005673 ! central zone olfactory bulb relationship: start ZFS:0000035 ! Larval:Protruding-mouth created_by: Ceri creation_date: 2013-05-22T05:21:01Z [Term] id: ZFA:0005724 name: central zone protoglomerulus 4 namespace: zebrafish_anatomy def: "Protoglomeruli in the central zone of the glomerular layer of the olfactory bulb. The central zone protoglomeruli have somewhat indistinct boundaries." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-980729-35] synonym: "CZ4" EXACT [] is_a: ZFA:0005670 ! central zone protoglomerulus relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0005673 ! central zone olfactory bulb relationship: start ZFS:0000035 ! Larval:Protruding-mouth created_by: Ceri creation_date: 2013-05-22T05:35:43Z [Term] id: ZFA:0005725 name: central zone protoglomerulus 5 namespace: zebrafish_anatomy def: "Protoglomeruli in the central zone of the glomerular layer of the olfactory bulb. The central zone protoglomeruli have somewhat indistinct boundaries." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-980729-35] synonym: "CZ5" EXACT [] is_a: ZFA:0005670 ! central zone protoglomerulus relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0005673 ! central zone olfactory bulb relationship: start ZFS:0000035 ! Larval:Protruding-mouth created_by: Ceri creation_date: 2013-05-22T05:36:02Z [Term] id: ZFA:0005726 name: medial protoglomerulus 1 namespace: zebrafish_anatomy def: "Protoglomeruli in the medial region of the glomerular layer of the olfactory bulb." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-050617-6, ZFIN:ZDB-PUB-980729-35] synonym: "MG1 " RELATED [] is_a: ZFA:0005671 ! medial protoglomerulus relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0005676 ! medial zone olfactory bulb relationship: start ZFS:0000035 ! Larval:Protruding-mouth created_by: Ceri creation_date: 2013-05-22T05:39:34Z [Term] id: ZFA:0005727 name: medial protoglomerulus 2 namespace: zebrafish_anatomy def: "Protoglomeruli in the medial region of the glomerular layer of the olfactory bulb." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-050617-6, ZFIN:ZDB-PUB-980729-35] synonym: "MG2" RELATED [] is_a: ZFA:0005671 ! medial protoglomerulus relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0005676 ! medial zone olfactory bulb relationship: start ZFS:0000035 ! Larval:Protruding-mouth created_by: Ceri creation_date: 2013-05-22T05:42:18Z [Term] id: ZFA:0005728 name: medial protoglomerulus 3 namespace: zebrafish_anatomy def: "Protoglomeruli in the medial region of the glomerular layer of the olfactory bulb." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-050617-6, ZFIN:ZDB-PUB-980729-35] synonym: "MG3" RELATED [] is_a: ZFA:0005671 ! medial protoglomerulus relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0005676 ! medial zone olfactory bulb relationship: start ZFS:0000035 ! Larval:Protruding-mouth created_by: Ceri creation_date: 2013-05-22T05:42:38Z [Term] id: ZFA:0005729 name: medial protoglomerulus 4 namespace: zebrafish_anatomy def: "Protoglomeruli in the medial region of the glomerular layer of the olfactory bulb." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-050617-6, ZFIN:ZDB-PUB-980729-35] synonym: "MG4" RELATED [] is_a: ZFA:0005671 ! medial protoglomerulus relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0005676 ! medial zone olfactory bulb relationship: start ZFS:0000035 ! Larval:Protruding-mouth created_by: Ceri creation_date: 2013-05-22T05:42:57Z [Term] id: ZFA:0005730 name: cranial motor neuron namespace: zebrafish_anatomy def: "Motor neuron that innervate muscles that control eye, jaw, and facial movements of the vertebrate head and parasympathetic neurons that innervate certain glands and organs." [GOC:cvs, ORCiD:0000-0002-2244-7917] subset: cell_slim synonym: "cranial motoneuron" EXACT [] xref: CL:0015000 is_a: ZFA:0009052 ! motor neuron relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001114 ! head relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-06-20T02:04:57Z [Term] id: ZFA:0005731 name: branchiomotor neuron namespace: zebrafish_anatomy def: "Cranial motor neuron which innervates muscles derived from the branchial (pharyngeal) arches." [GOC:cvs, ORCiD:0000-0002-2244-7917, PMID:14699587] subset: cell_slim synonym: "branchi motor neuron" EXACT [] synonym: "special visceral motor neuron" EXACT [] xref: CL:0005023 is_a: ZFA:0005730 ! cranial motor neuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-06-20T02:06:26Z [Term] id: ZFA:0005732 name: visceromotor neuron namespace: zebrafish_anatomy def: "Cranial motor neurons are found in the hindbrain, and innervate parasympathetic neurons that innervate tear glands, sweat glands, and the smooth muscles and glands of the pulmonary, cardiovascular, and gastrointestinal systems." [GOC:cvs, ORCiD:0000-0002-2244-7917, PMID:14699587] subset: cell_slim synonym: "general visceral motor neuron" EXACT [] xref: CL:0005025 is_a: ZFA:0005730 ! cranial motor neuron relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000029 ! hindbrain relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-06-20T02:08:10Z [Term] id: ZFA:0005733 name: somatomotor neuron namespace: zebrafish_anatomy def: "Cranial motor neurons found in the midbrain and hindbrain that innervates muscles that control eye and tongue." [GOC:cvs, ORCiD:0000-0002-2244-7917, PMID:14699587] subset: cell_slim xref: CL:0005024 is_a: ZFA:0005730 ! cranial motor neuron relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000029 ! hindbrain relationship: part_of ZFA:0000128 ! midbrain relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-06-20T02:09:35Z [Term] id: ZFA:0005734 name: lacunocanalicular system namespace: zebrafish_anatomy def: "A system of osteocytes connected through canals within the vertebra. Osteocytes extend processes through canals within ossified bone. The lacunocanalicular system is poorly developed in zebrafish with most osteocytes having one or two cytoplasmic processes." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-22629-14] is_a: ZFA:0001439 ! anatomical system relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001189 ! vertebra relationship: part_of ZFA:0005621 ! bone tissue relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-07-08T11:48:50Z [Term] id: ZFA:0005735 name: lacunocanalicular canal namespace: zebrafish_anatomy def: "Anatomical space, part of the lacunocanalicular system that connects lacuna within bone tissue allowing osteocyte projections to connect." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-11518-14] is_a: ZFA:0001643 ! anatomical space relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005734 ! lacunocanalicular system relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-07-08T12:10:17Z [Term] id: ZFA:0005736 name: lacuna namespace: zebrafish_anatomy def: "Anatomical space a small cavity, in the matrix of bone tissue. Part of the lacunocanalicular system." [GOC:cvs, ORCiD:0000-0002-2244-7917] is_a: ZFA:0001643 ! anatomical space relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005734 ! lacunocanalicular system relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-07-08T12:19:22Z [Term] id: ZFA:0005737 name: intestinal rod namespace: zebrafish_anatomy def: "Multicellular structure composed of endodermal cells that forms a continuous rod along the anterior-posterior axis of the embryo in contact with the YSL. This rod will give rise to the endodermal components of the alimentary canal and its connected organs: liver, gall bladder pancreas and swim bladder. Does not have part pharyngeal endoderm." [ZFIN:ZDB-PUB-030115-26] synonym: "endodermal rod" RELATED [ZFIN:ZDB-PUB-030115-26] synonym: "intestinal anlage" RELATED [ZFIN:ZDB-PUB-050120-6.] is_a: ZFA:0001488 ! multi-tissue structure relationship: develops_from ZFA:0000017 ! endoderm relationship: end ZFS:0000032 ! Pharyngula:High-pec relationship: start ZFS:0000027 ! Segmentation:20-25 somites created_by: Ceri creation_date: 2013-07-23T03:03:23Z [Term] id: ZFA:0005738 name: intestinal bulb primordium namespace: zebrafish_anatomy def: "Portion of the intestinal rod that loops to left between 26-30hpf and gives rise to the intestinal bulb and liver and anterior pancreatic primordium. The endoderm at this stage is a compact mass of cells with little to no polarization." [ZFIN:ZDB-PUB-031103-19] is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0005737 ! intestinal rod relationship: end ZFS:0000032 ! Pharyngula:High-pec relationship: start ZFS:0000029 ! Pharyngula:Prim-5 created_by: Ceri creation_date: 2013-07-23T03:06:11Z [Term] id: ZFA:0005739 name: pancreatic acinar cell namespace: zebrafish_anatomy def: "A secretory cell found in pancreatic acini that secretes digestive enzymes and mucins. This cell is a typical zymogenic cell, has a basal nucleus and basophilic cytoplasm consisting of regular arrays of granular endoplasmic reticulum with mitochondria and dense secretory granules." [GOC:tfm, ZFIN:ZDB-PUB-050623-3] subset: cell_slim xref: CL:0002064 is_a: ZFA:0009277 ! acinar cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005741 ! pancreatic acinar gland relationship: start ZFS:0000033 ! Hatching:Long-pec created_by: Ceri creation_date: 2013-07-29T10:13:45Z [Term] id: ZFA:0005740 name: pancreatic centroacinar cell namespace: zebrafish_anatomy def: "A cuboidal epithelial cell that is continuous with the lining of intercalated ducts that drain the acinus. This cell type secretes a high pH solution to aid in activation of zymogens, and can differentiate into endocrine and exocrine pancreatic cell types." [GOC:tfm, ZFIN:ZDB-PUB-050623-3] subset: cell_slim synonym: "CAC" EXACT [ZFIN:ZDB-PUB-050623-3] xref: CL:0002080 is_a: ZFA:0009038 ! columnar/cuboidal epithelial cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005741 ! pancreatic acinar gland relationship: start ZFS:0000033 ! Hatching:Long-pec created_by: Ceri creation_date: 2013-07-29T10:16:32Z [Term] id: ZFA:0005741 name: pancreatic acinar gland namespace: zebrafish_anatomy def: "Portion of exocrine pancreas that is comprised of polarized cells containing apical zymogen granules that store digestive enzymes such as trypsin and chymotrypsin and abundant rough endoplasmic reticulum and mitochondria." [ZFIN:ZDB-PUB-050623-3, ZFIN:ZDB-PUB-070310-3] synonym: "exocrine glands pancreas" EXACT [] synonym: "pancreatic acini" EXACT [] is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005753 ! pancreatic lobule relationship: start ZFS:0000033 ! Hatching:Long-pec created_by: Ceri creation_date: 2013-07-29T10:42:33Z [Term] id: ZFA:0005742 name: pancreatic PP cell namespace: zebrafish_anatomy def: "Polypeptide producing cell located in the islets of the pancreas." [GOC:tfm] subset: cell_slim synonym: "pancreatic F cells " RELATED [] synonym: "pancreatic polypeptide-secreting cell" EXACT [] synonym: "PP cell of pancreatic islet" EXACT [] synonym: "PP-cell of pancreatic islet" EXACT [] xref: CL:0002275 is_a: ZFA:0009034 ! epithelial cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001260 ! endocrine pancreas relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-07-29T10:59:29Z [Term] id: ZFA:0005743 name: pancreatic D cell namespace: zebrafish_anatomy def: "A D cell located in the pancreas. Peripherally placed within the islets like type A cells; contains somatostatin." [CL:tfm] subset: cell_slim synonym: "D-cell of pancreatic islet" EXACT [] synonym: "delta cell of islet" EXACT [] synonym: "pancreatic delta cell" EXACT [] synonym: "somatostatin-secreting pancreatic cell" EXACT [] xref: CL:0000173 is_a: ZFA:0009228 ! D cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001260 ! endocrine pancreas relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-07-29T11:03:15Z [Term] id: ZFA:0005744 name: notochord outer sheath cell namespace: zebrafish_anatomy def: "Cells that form an epithelial-like sheath around the vacuolated inner notochord cells. Outer cells secrete a thick extracellular perinotochordal basement membrane." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-130322-23] subset: cell_slim synonym: "notochord sheath cell" RELATED [] xref: CL:0007007 is_a: ZFA:0009034 ! epithelial cell relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000135 ! notochord relationship: start ZFS:0000026 ! Segmentation:14-19 somites created_by: Ceri creation_date: 2013-07-30T04:09:49Z [Term] id: ZFA:0005745 name: structural cell namespace: zebrafish_anatomy def: "A cell whose primary function is to provide structural support, to provide strength and physical integrity to the organism." [TAIR:sr] subset: cell_slim xref: CL:0000293 is_a: ZFA:0009000 ! cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-07-30T04:14:44Z [Term] id: ZFA:0005746 name: notochord inner cell namespace: zebrafish_anatomy def: "Structural cell of notochord that contain one large fluid-filled intracellular vacuole that occupies most of the cell volume." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-130322-23] subset: cell_slim synonym: "chordocytes" EXACT [] is_a: ZFA:0005745 ! structural cell relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000135 ! notochord relationship: start ZFS:0000026 ! Segmentation:14-19 somites created_by: Ceri creation_date: 2013-07-30T04:15:56Z [Term] id: ZFA:0005747 name: supraintestinal lymphatic vessel namespace: zebrafish_anatomy def: "Lymph vessels that are located on either side of the PCV in the posterior region of the intestine." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-120529-43] synonym: "SIL" EXACT [] is_a: ZFA:0005844 ! lymph vessel relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005840 ! intestinal lymphatic network relationship: start ZFS:0000037 ! Larval:Day 5 created_by: Ceri creation_date: 2013-07-31T10:44:16Z [Term] id: ZFA:0005748 name: intrapancreatic duct namespace: zebrafish_anatomy def: "Digestive duct within the pancreas. The pancreatic duct carries inactive digestive enzymes to the intestine." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-050623-3, ZFIN:ZDB-PUB-101201-32] is_a: ZFA:0005162 ! digestive system duct relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000140 ! pancreas relationship: part_of ZFA:0001372 ! pancreatic duct relationship: start ZFS:0000033 ! Hatching:Long-pec created_by: Ceri creation_date: 2013-08-01T02:17:49Z [Term] id: ZFA:0005749 name: intercalated duct pancreas namespace: zebrafish_anatomy def: "The portion of the intrapancreatic duct leading from the pancreatic acinar gland to the intralobular duct." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-050623-3] is_a: ZFA:0005748 ! intrapancreatic duct relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000035 ! Larval:Protruding-mouth created_by: Ceri creation_date: 2013-08-01T02:44:27Z [Term] id: ZFA:0005750 name: pancreatic intralobular duct namespace: zebrafish_anatomy def: "Intrapancreatic duct within a pancreatic lobe that connects all the intercalated duct with an interlobular duct. The intralobular duct is lined with cuboidal cells." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-050623-3] is_a: ZFA:0005748 ! intrapancreatic duct relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005753 ! pancreatic lobule relationship: start ZFS:0000035 ! Larval:Protruding-mouth created_by: Ceri creation_date: 2013-08-01T02:50:38Z [Term] id: ZFA:0005751 name: pancreatic interlobular duct namespace: zebrafish_anatomy def: "Intrapancreatic duct that connects the intralobular duct to the main pancreatic duct." [GOC:cvs, ORCiD:0000-0002-2244-7917] is_a: ZFA:0005748 ! intrapancreatic duct relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-08-01T02:53:52Z [Term] id: ZFA:0005752 name: main intrapancreatic duct namespace: zebrafish_anatomy def: "Intrapancreatic duct that connects to the interlobular ducts and drains into the extrapancreatic duct. The main duct may not be present in all larva and may develop in a segmented fashion." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-050623-3, ZFIN:ZDB-PUB-070310-3] is_a: ZFA:0005748 ! intrapancreatic duct relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000035 ! Larval:Protruding-mouth created_by: Ceri creation_date: 2013-08-01T02:55:07Z [Term] id: ZFA:0005753 name: pancreatic lobule namespace: zebrafish_anatomy def: "Cluster of acinar glands surrounding an intralobular duct." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-050623-3] comment: Lobules are composed of multiple acini so are only apparent starting ~72hpf. Before 72hpf consider annotating to acinar gland. synonym: "exocrine lobule" EXACT [ZFIN:ZDB-PUB-050623-3] is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001249 ! exocrine pancreas relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-08-01T03:16:34Z [Term] id: ZFA:0005754 name: primary islet namespace: zebrafish_anatomy def: "The primary islet is the first islet to develop." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "principal islet" EXACT [] is_a: ZFA:0005755 ! islet relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-08-01T04:05:06Z [Term] id: ZFA:0005755 name: islet namespace: zebrafish_anatomy def: "Portion of tissue composed of a group of cells in the pancreas producing insulin, glucagon and somatostatin. Part of the endocrine pancreas." [GOC:cvs, ORCiD:0000-0002-2244-7917] is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001260 ! endocrine pancreas relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-08-01T04:10:28Z [Term] id: ZFA:0005756 name: secondary islet namespace: zebrafish_anatomy def: "Islet that develops after the primary islet." [GOC:cvs, ORCiD:0000-0002-2244-7917] comment: Start stage known to be after 3dpf. is_a: ZFA:0005755 ! islet relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-08-01T04:10:55Z [Term] id: ZFA:0005757 name: mid diencephalic organizer namespace: zebrafish_anatomy def: "Portion of tissue composed of the signal-generating cells within the zona limitans intrathalamica." [GOC:cvs, GOC:DF, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-100621-4, ZFIN:ZDB-PUB-120105-73] synonym: "MDO" EXACT [] synonym: "mid-diencephalic organizer" EXACT [] is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0001344 ! zona limitans intrathalamica relationship: start ZFS:0000029 ! Pharyngula:Prim-5 created_by: Ceri creation_date: 2013-08-02T03:20:09Z [Term] id: ZFA:0005758 name: pancreatic fat namespace: zebrafish_anatomy def: "Adipose tissue interspersed within the pancreatic acini." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-101011-51] comment: No evidence of septa surrounding fat has been presented so is a fat accumulation or deposit not a fat pad. is_a: ZFA:0005345 ! adipose tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005753 ! pancreatic lobule relationship: start ZFS:0000039 ! Larval:Days 7-13 created_by: Ceri creation_date: 2013-09-23T10:03:51Z [Term] id: ZFA:0005759 name: visceral fat namespace: zebrafish_anatomy def: "Adipose tissue on the surface of the organs within the pleuroperitoneal cavity. Visceral adipocytes were observed posterior to the swim bladder and lining the visceral cavity." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-101011-51] comment: No evidence of septa surrounding fat has been presented so is a fat accumulation or deposit not a fat pad. synonym: "visceral fat deposit" RELATED [] is_a: ZFA:0005345 ! adipose tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0007116 ! pleuroperitoneal region relationship: start ZFS:0000040 ! Larval:Days 14-20 created_by: Ceri creation_date: 2013-09-23T10:23:07Z [Term] id: ZFA:0005760 name: cranial fat namespace: zebrafish_anatomy def: "Adipose tissue in the cranium. Cranial adipocytes are located within the ventral wall of the cranium, situated between the brain and the esophagus." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-101011-51] comment: No evidence of septa surrounding fat has been presented so is a fat accumulation or deposit not a fat pad. is_a: ZFA:0005345 ! adipose tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001114 ! head relationship: start ZFS:0000041 ! Larval:Days 21-29 created_by: Ceri creation_date: 2013-09-23T10:26:44Z [Term] id: ZFA:0005761 name: periorbital fat namespace: zebrafish_anatomy def: "Adipose tissue surrounding the eye." [GOC:cvs, ORCiD:0000-0002-2244-7917] comment: No evidence of septa surrounding fat has been presented so is a fat accumulation or deposit not a fat pad. is_a: ZFA:0005760 ! cranial fat relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001410 ! orbital region relationship: start ZFS:0000041 ! Larval:Days 21-29 created_by: Ceri creation_date: 2013-09-23T10:59:00Z [Term] id: ZFA:0005762 name: subcutaneous fat namespace: zebrafish_anatomy def: "Adipose tissue between muscle and integument." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-111012-7] is_a: ZFA:0005345 ! adipose tissue relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000041 ! Larval:Days 21-29 created_by: Ceri creation_date: 2013-09-23T11:20:54Z [Term] id: ZFA:0005763 name: esophageal fat namespace: zebrafish_anatomy def: "Adipose tissue surrounding the esophagus." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-101011-51] is_a: ZFA:0005345 ! adipose tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001114 ! head relationship: start ZFS:0000042 ! Juvenile:Days 30-44 created_by: Ceri creation_date: 2013-09-23T11:32:46Z [Term] id: ZFA:0005764 name: mandibular fat namespace: zebrafish_anatomy def: "Adipose tissue deposited along the mandible." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-101011-51] synonym: "jaw fat deposit" EXACT [] is_a: ZFA:0005345 ! adipose tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001273 ! ventral mandibular arch relationship: start ZFS:0000042 ! Juvenile:Days 30-44 created_by: Ceri creation_date: 2013-09-23T11:33:07Z [Term] id: ZFA:0005765 name: pericardial fat namespace: zebrafish_anatomy def: "Adipose tissue surrounding the heart." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-090417-9] synonym: "pericardial fat deposit" EXACT [] is_a: ZFA:0005345 ! adipose tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000054 ! pericardium relationship: start ZFS:0000042 ! Juvenile:Days 30-44 created_by: Ceri creation_date: 2013-09-23T11:41:21Z [Term] id: ZFA:0005766 name: pectoral fin plate fat namespace: zebrafish_anatomy def: "Adipose tissue that forms at the base of the pectoral fin." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-090417-9] synonym: "pectoral fin plate deposit" EXACT [] is_a: ZFA:0005762 ! subcutaneous fat relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001161 ! pectoral fin relationship: start ZFS:0000042 ! Juvenile:Days 30-44 created_by: Ceri creation_date: 2013-09-23T11:42:40Z [Term] id: ZFA:0005767 name: caudal fin fat namespace: zebrafish_anatomy def: "Subcutaneous adipose tissue deposit at the base of the caudal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-101011-51] synonym: "tail fin fat" EXACT [] is_a: ZFA:0005762 ! subcutaneous fat relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001058 ! caudal fin relationship: start ZFS:0000042 ! Juvenile:Days 30-44 created_by: Ceri creation_date: 2013-09-23T12:46:21Z [Term] id: ZFA:0005768 name: trigeminal sensory neuron namespace: zebrafish_anatomy def: "Sensory neuron that extends a single axon shaft along the lateral white matter of the hindbrain and spinal cord. Numerous medially projecting branches are later formed and innervate a series of target nuclei along the anteroposterior axis of the hindbrain and spinal cord. The highly branched axons innervate the integument of the head. There are several subtypes with different afferent branching morphologies." [ZFIN:ZDB-PUB-120106-15] is_a: ZFA:0009053 ! sensory neuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000023 ! Segmentation:1-4 somites created_by: Ceri creation_date: 2013-09-30T03:31:51Z [Term] id: ZFA:0005769 name: spermatid namespace: zebrafish_anatomy def: "A male germ cell that develops from the haploid secondary spermatocytes. Without further division, spermatids undergo structural changes and give rise to spermatozoa." [CL:editor] subset: cell_slim xref: CL:0000018 is_a: ZFA:0009016 ! germ line cell relationship: develops_from ZFA:0009005 ! spermatocyte relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000598 ! testis relationship: start ZFS:0000043 ! Juvenile:Days 45-89 created_by: Ceri creation_date: 2013-10-04T03:51:27Z [Term] id: ZFA:0005770 name: crypt neuron olfactory support cell namespace: zebrafish_anatomy def: "Specialized olfactory support cell that surrounds crypt olfactory sensory neurons. There are one or two support cells for each crypt neuron. The cytoplasm of crypt neuron olfactory support cells is less electron dense then other support cells. They also bear numerous microvilli at their apical rim. When two supporting cells are present, they interdigitate with each other Mitochondria in crypt supporting cells are larger than those in the common supporting cells." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-060724-7] is_a: ZFA:0000688 ! olfactory support cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-11-05T11:05:25Z [Term] id: ZFA:0005771 name: ectomesenchyme namespace: zebrafish_anatomy def: "Portion of tissue that develops from the cranial neural crest and which cells populate a series of pharyngeal arches from which develops the support skeleton of the jaw and gills." [ZFIN:ZDB-PUB-110609-14, ZFIN:ZDB-PUB-120517-11] is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0007087 ! migratory cranial neural crest relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000025 ! Segmentation:10-13 somites created_by: Ceri creation_date: 2013-11-25T12:11:28Z [Term] id: ZFA:0005772 name: fertilized egg namespace: zebrafish_anatomy def: "Diploid cell produced by the fusion of sperm cell nucleus and egg cell." [GOC:tjm] synonym: "zygote " EXACT [] xref: CL:00000365 is_a: ZFA:0009000 ! cell relationship: end ZFS:0000001 ! Zygote:1-cell relationship: start ZFS:0000001 ! Zygote:1-cell created_by: Ceri creation_date: 2013-11-25T01:46:49Z [Term] id: ZFA:0005773 name: embryonic blood vessel endothelial progenitor cell namespace: zebrafish_anatomy def: "An endothelial progenitor cell that participates in angiogenesis during development." [GOC:tjm] xref: CL:0002546 is_a: ZFA:0009138 ! mesodermal cell relationship: end ZFS:0000026 ! Segmentation:14-19 somites relationship: start ZFS:0000023 ! Segmentation:1-4 somites created_by: Ceri creation_date: 2013-12-02T02:57:49Z [Term] id: ZFA:0005774 name: atrial epicardium namespace: zebrafish_anatomy def: "The external layer of the atrium bounding the atrial myocardium." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-100112-31] is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005057 ! epicardium relationship: start ZFS:0000036 ! Larval:Day 4 created_by: Ceri creation_date: 2013-11-26T04:32:55Z [Term] id: ZFA:0005775 name: enteric neuron namespace: zebrafish_anatomy def: "Neuron that is part of the enteric nervous system." [CL:MAH] xref: CL:0007011 is_a: ZFA:0009059 ! autonomic neuron relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001155 ! enteric nervous system relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2014-03-06T12:36:50Z [Term] id: ZFA:0005776 name: parasympathetic neuron namespace: zebrafish_anatomy def: "Parasympathetic neurons are part of the parasympathetic nervous system and the cell bodies lie in the brain and sacral region of the spinal cord. The neurons are mainly cholinergic." [ISBN:0080923437] xref: CL:0011102 is_a: ZFA:0009059 ! autonomic neuron relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001575 ! parasympathetic nervous system relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2014-03-06T12:39:37Z [Term] id: ZFA:0005777 name: sympathetic neuron namespace: zebrafish_anatomy def: "Sympathetic neurons are part of the sympathetic nervous system and are primarily adrenergic producing the neurotransmitter noradrenalin along with other neuropeptides." [ISBN:0080923437] xref: CL:0011103 is_a: ZFA:0009059 ! autonomic neuron relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001576 ! sympathetic nervous system relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2014-03-06T12:42:24Z [Term] id: ZFA:0005778 name: hypocretin-secreting neuron namespace: zebrafish_anatomy def: "A neuron that releases hypocretin as a neurotransmitter." [PMID:23848055] synonym: "orexin secreting neuron " RELATED [] xref: CL:0011109 is_a: ZFA:0009248 ! neuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2014-03-06T01:14:29Z [Term] id: ZFA:0005779 name: thymic epithelium namespace: zebrafish_anatomy def: "Epithelium within the thymus where lymphocytes mature. Cells of the thymic epithelium have cytoplasm that appear devoid of most membrane bound organelles but contain bundles of cytoplasmic filaments, and frequent desmosomes occur between these epithelial cells. There are also secretory epithelial cells that contain a heterogeneous population of electron-dense, cytoplasmic granules and a well developed Golgi complex. Epithelial cysts are present after 3 weeks." [ZFIN:ZDB-PUB-990414-60] is_a: ZFA:0001486 ! epithelium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001078 ! thymus relationship: start ZFS:0000035 ! Larval:Protruding-mouth created_by: Ceri creation_date: 2014-03-11T03:25:06Z [Term] id: ZFA:0005780 name: immature thymic epithelium namespace: zebrafish_anatomy def: "Epithelium of the thymus primordium composed of cells of immature morphology. The immature thymic epithelium is continuous with the pharyngeal epithelium. The immature thymic epithelium is composed of electron-lucent epithelial cells of irregular or polygonal shape and contain numerous ribosomes, large electron-lucent mitochondria, and rough endoplasmic reticulum. Nascent desmosomes join these primitive epithelial cells together." [ZFIN:ZDB-PUB-990414-60] is_a: ZFA:0001486 ! epithelium relationship: end ZFS:0000035 ! Larval:Protruding-mouth relationship: part_of ZFA:0001077 ! thymus primordium relationship: start ZFS:0000034 ! Hatching:Pec-fin created_by: Ceri creation_date: 2014-03-11T03:28:25Z [Term] id: ZFA:0005781 name: cloaca namespace: zebrafish_anatomy def: "Part of the gut where the pronephric tubules come together with the caudal end of the intestine attaching at 4dpf. The oviduct or sperm duct connect later." [ZFIN:ZDB-PUB-060508-11] is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000112 ! gut relationship: start ZFS:0000029 ! Pharyngula:Prim-5 created_by: Ceri creation_date: 2014-03-12T09:34:37Z [Term] id: ZFA:0005782 name: intestinal opening namespace: zebrafish_anatomy def: "The juncture where the intestine empties into the cloaca." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "gut opening" EXACT [] is_a: ZFA:0001643 ! anatomical space relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000330 ! cloacal chamber relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2014-03-12T09:39:01Z [Term] id: ZFA:0005783 name: cloacal epithelium namespace: zebrafish_anatomy def: "Epithelium lining the cloaca. The epithelium is a simple cuboidal epithelium at Prim-5." [ZFIN:ZDB-PUB-000505-17] is_a: ZFA:0001486 ! epithelium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005123 ! gut epithelium relationship: part_of ZFA:0005781 ! cloaca relationship: start ZFS:0000029 ! Pharyngula:Prim-5 created_by: Ceri creation_date: 2014-03-12T10:18:40Z [Term] id: ZFA:0005784 name: striated muscle cell namespace: zebrafish_anatomy def: "Muscle cell which has as its direct parts myofilaments organized into sarcomeres." [GOC:tfm, ISBN:0721662544] xref: CL:0000737 is_a: ZFA:0009114 ! muscle cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2014-03-18T03:14:29Z [Term] id: ZFA:0005785 name: esophageal striated muscle namespace: zebrafish_anatomy def: "Striated muscle of the esophogus. Permits voluntary swallowing." [ZFIN:ZDB-PUB-130709-61] is_a: ZFA:0005145 ! muscle relationship: end ZFS:0000044 ! Adult relationship: has_developmental_contribution_from ZFA:0000072 ! somite 1 relationship: has_developmental_contribution_from ZFA:0000728 ! somite 2 relationship: has_developmental_contribution_from ZFA:0000732 ! somite 3 relationship: part_of ZFA:0000204 ! esophagus relationship: start ZFS:0000035 ! Larval:Protruding-mouth created_by: Ceri creation_date: 2014-03-18T03:37:56Z [Term] id: ZFA:0005786 name: cleft cell namespace: zebrafish_anatomy def: "Wedge-shaped epidermal cell positioned along the apex of the developing fin fold. Each cleft cell retains a wedge-shaped form during fold formation and develops a basal cleft-shaped invagination. Invaginations are aligned in neighboring cleft cells so that these cells cap the distal boundary of the subepidermal space where collagenous extracellular fibres called actinotrichia run anteroposteriorly along the length of the fin fold." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-195] is_a: ZFA:0009183 ! epidermal cell relationship: end ZFS:0000037 ! Larval:Day 5 relationship: part_of ZFA:0000040 ! median fin fold relationship: start ZFS:0000028 ! Segmentation:26+ somites created_by: Ceri creation_date: 2014-03-25T09:31:29Z [Term] id: ZFA:0005787 name: hypophyseal artery namespace: zebrafish_anatomy def: "Artery that runs along the midline from anterior to posterior regions of the hypothalamus and splits into two capillary branches (hyc). The formation of the artery is initiated at the hypophysis itself and extends anteriorly until it connects with the palatocerebral arteries at day 2.5." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-111027-47, ZFIN:ZDB-PUB-130222-26] is_a: ZFA:0000005 ! artery relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000099 ! brain vasculature relationship: start ZFS:0000033 ! Hatching:Long-pec created_by: Ceri creation_date: 2014-04-03T10:42:12Z [Term] id: ZFA:0005788 name: hypophyseal vein namespace: zebrafish_anatomy def: "Vein thats tarts posterior of the hypophysis and drains the hypophyseal capillaries. It empties into the primary head sinus." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-130222-26] is_a: ZFA:0000082 ! vein relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000099 ! brain vasculature relationship: start ZFS:0000033 ! Hatching:Long-pec created_by: Ceri creation_date: 2014-04-03T10:47:03Z [Term] id: ZFA:0005789 name: preopticohypophyseal tract namespace: zebrafish_anatomy def: "Axon tract originating from the two hemispheres of the neurosecretory preoptic areas converging into the midline and terminating at the ventral part of the hypothalamus at the presumed location of the pituitary. Analogous to the supraopticohypophyseal tract in mammals." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-111027-47] synonym: "preopticohypophyseal axon tract" EXACT [] is_a: ZFA:0001682 ! white matter relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2014-04-03T11:19:03Z [Term] id: ZFA:0005790 name: hypophyseal capillary namespace: zebrafish_anatomy def: "Pair of capillaries that bilaterally encompass the hypophysis starting at the anterior aspect of the hypophysis (pituitary). Directly posterior to the pituitary, the two capillaries fuse with the hypophyseal vein." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-130222-26] is_a: ZFA:0005250 ! capillary relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000099 ! brain vasculature relationship: start ZFS:0000033 ! Hatching:Long-pec created_by: Ceri creation_date: 2014-04-03T11:27:53Z [Term] id: ZFA:0005791 name: breeding tubercle namespace: zebrafish_anatomy def: "Surface structure that is a keratinized epidermal appendages that is a contact organ and secondary sex organ." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-140317-29, ZFIN:ZDB-PUB-140519-1] is_a: ZFA:0000292 ! surface structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000368 ! integument relationship: start ZFS:0000041 ! Larval:Days 21-29 created_by: Ceri creation_date: 2014-05-15T03:26:12Z [Term] id: ZFA:0005792 name: jaw flap namespace: zebrafish_anatomy def: "Surface structure that is a protrusion from the rostral end of the jaw, supported by the mandibular projection." [ZFIN:ZDB-PUB-140317-29, ZFIN:ZDB-PUB-140519-1] synonym: "lateral projections lower jaw" EXACT [] is_a: ZFA:0000292 ! surface structure relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000041 ! Larval:Days 21-29 created_by: Ceri creation_date: 2014-06-04T02:10:53Z [Term] id: ZFA:0005793 name: superficial layer of breeding tubercle namespace: zebrafish_anatomy def: "Layer of smooth cells composing the outer layer of the breeding tubercle. Cells in this layer have a high keratin content, lamellar bodies, and condensed chromosomes. This layer is repeatedly shed and regenerated." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-140317-29] is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005791 ! breeding tubercle relationship: start ZFS:0000041 ! Larval:Days 21-29 created_by: Ceri creation_date: 2014-06-04T02:33:07Z [Term] id: ZFA:0005794 name: second tier layer of breeding tubercle namespace: zebrafish_anatomy def: "Cell layer that lies underneath the superficial layer of the breeding tubercle. Characterized by tight junctions within the layer." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-140317-29] is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005791 ! breeding tubercle relationship: start ZFS:0000041 ! Larval:Days 21-29 created_by: Ceri creation_date: 2014-06-04T02:46:01Z [Term] id: ZFA:0005795 name: spinous layer of breeding tubercle namespace: zebrafish_anatomy def: "Intermediate layer of the breeding tubercles characterized by cells with loose spinous organization connected to each other via desmosomes, but with wide extracellular spaces in between." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-140317-29] synonym: "spinous keratinocyte layer" EXACT [] is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005791 ! breeding tubercle relationship: start ZFS:0000041 ! Larval:Days 21-29 created_by: Ceri creation_date: 2014-06-04T02:46:51Z [Term] id: ZFA:0005796 name: basal layer breeding tubercle namespace: zebrafish_anatomy def: "Layer of breeding tubercle proximal to basal lamina of the integument." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-140317-29] is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005791 ! breeding tubercle relationship: start ZFS:0000041 ! Larval:Days 21-29 created_by: Ceri creation_date: 2014-06-04T02:48:25Z [Term] id: ZFA:0005797 name: pectoral fin breeding tubercle namespace: zebrafish_anatomy def: "Breeding tubercles along the surface of the pectoral fin lepidotrichium of males." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-140317-29, ZFIN:ZDB-PUB-140519-1] is_a: ZFA:0005791 ! breeding tubercle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000242 ! male organism relationship: part_of ZFA:0001161 ! pectoral fin relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2014-06-04T02:50:54Z [Term] id: ZFA:0005798 name: jaw row breeding tubercle namespace: zebrafish_anatomy def: "Surface structures composed of breeding tubercles arranged in a double row in the medial region on each side of the lower jaw." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-140317-29, ZFIN:ZDB-PUB-140519-1] is_a: ZFA:0005791 ! breeding tubercle relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000041 ! Larval:Days 21-29 created_by: Ceri creation_date: 2014-06-04T02:56:48Z [Term] id: ZFA:0005799 name: jaw flap breeding tubercle namespace: zebrafish_anatomy def: "Breeding tubercles that cover the surface of the jaw flap." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-140317-29, ZFIN:ZDB-PUB-140519-1] is_a: ZFA:0005791 ! breeding tubercle relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000041 ! Larval:Days 21-29 created_by: Ceri creation_date: 2014-06-04T03:32:28Z [Term] id: ZFA:0005800 name: extracellular lipid lamellae namespace: zebrafish_anatomy def: "Portion of organism substance that is located between the cap and second tier layers of the breeding tubercles. The lipid lamellae is composed of lipids." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-140317-29] is_a: ZFA:0001487 ! portion of organism substance relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005791 ! breeding tubercle relationship: start ZFS:0000041 ! Larval:Days 21-29 created_by: Ceri creation_date: 2014-06-04T04:00:53Z [Term] id: ZFA:0005801 name: interrenal vessel namespace: zebrafish_anatomy def: "The interrenal vessel (IRV) is the blood vessels supplying the interrenal gland. It is formed by sprouting from the dorsal aorta. The development of the IRV is temporally and spatially correlated with the initiation interrenal gland formation. After traversing the interrenal tissue, the IRV connects to the posterior end segment of the anterior mesenteric artery where two branches of swim bladder arteries branched out. Angiogenic sprout is visible between 34 and 48 hpf with blood flow by 3dpf." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-120905-5] synonym: "IRV" EXACT [] is_a: ZFA:0005314 ! blood vessel relationship: develops_from ZFA:0005802 ! interrenal angiogenic sprout relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0001345 ! interrenal gland relationship: start ZFS:0000035 ! Larval:Protruding-mouth created_by: Ceri creation_date: 2014-06-06T01:45:08Z [Term] id: ZFA:0005802 name: interrenal angiogenic sprout namespace: zebrafish_anatomy def: "Sprout from the dorsal aorta that develops into the interrenal vessel." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-120905-5] is_a: ZFA:0005604 ! angiogenic sprout relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001346 ! interrenal primordium relationship: start ZFS:0000030 ! Pharyngula:Prim-15 created_by: Ceri creation_date: 2014-06-10T10:26:33Z [Term] id: ZFA:0005803 name: cupula namespace: zebrafish_anatomy def: "Gelatinous substance surrounding the kinocila of the neuromast." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-768] is_a: ZFA:0001487 ! portion of organism substance relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000243 ! neuromast relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2014-06-24T09:55:56Z [Term] id: ZFA:0005804 name: rhombencephalic efferent neurons to the lateral line namespace: zebrafish_anatomy def: "Efferent neuron where the cell body is located in the hindbrain reticular formation immediately adjacent to the medial longitudinal fascicle at the rostrocaudal level between the MiDl and the CaD and adjacent to the descending Mauthner axon. RELL dendrites are large and extend bilaterally into the ventrolateral neuropil. The ipsilateral dendrite reaches into a single area of the ventrolateral neuropil whereas the contralateral dendrite branches and extends into two different levels of the same rostrocaudal column of the ventrolateral neuropil. The axon emerges from the ventral part of the perikaryon courses a short distance rostrally to the level of the ROLE cells and then turns laterally from the CNS accompanying the root of the posterior lateral line nerve." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-768] subset: cell_slim synonym: "RELL neuron" EXACT [] is_a: ZFA:0009239 ! efferent neuron relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000029 ! hindbrain relationship: part_of ZFA:0000034 ! lateral line system relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2014-06-24T10:08:34Z [Term] id: ZFA:0005805 name: rhombencephalic octavolateral efferent neuron namespace: zebrafish_anatomy def: "Efferent neuron located in the hindbrain. The axon of ROLE cells travels rostrally near the ipsilateral medial longitudinal fascicle to the level of the Mauthner cell where it turns laterally to exit with the eighth nerve. Outside the brain the axon continues ventrally to the base of the saccular macula in the ear then turns caudally to ender the ganglion of the posterior lateral line. A branch of the axon turns ventrally before the main axon enters the LLG. The branch goes ventrally along the wall of the otic capsule." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-768] subset: cell_slim synonym: "ROLE neuron" EXACT [] is_a: ZFA:0009239 ! efferent neuron relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000128 ! midbrain relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2014-06-24T10:42:22Z [Term] id: ZFA:0005806 name: diencephalic efferent neurons to the lateral line namespace: zebrafish_anatomy def: "Efferent neurons located ventrally in the diencephalon. The dendrites extend into a large area of the diencephalic neuropil rostral, caudal, lateral and ventral to the cell body. The axon courses dorsally and then caudally through the midbrain. As the axon descends through the brain it gives off branches at several levels. One branch usually exits the brain with the posterior lateral line nerve. The axon can be traced into the cervical spinal cord." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-768] comment: There may be 2 neuron types grouped under this name since there are some instances the axons were seen to exit with the eighth cranial nerve instead of the PLL nerve: ZDB-PUB-961014-768. subset: cell_slim synonym: "DELL neuron" EXACT [] is_a: ZFA:0009239 ! efferent neuron relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000034 ! lateral line system relationship: part_of ZFA:0000101 ! diencephalon relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2014-06-24T11:50:49Z [Term] id: ZFA:0005807 name: intestine lumen namespace: zebrafish_anatomy def: "Anatomical space within the intestine where digestion normally occurs. The intestinal lumen begins as an interconnected web of small space at 43 hpf that over time remodels to form a single continuous tube at 68hpf. Lumen maturation proceeds from anterior to posterior along the intestine." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-140415-28] synonym: "gut lumen" RELATED [] is_a: ZFA:0001643 ! anatomical space relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001338 ! intestine relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2014-07-14T01:57:57Z [Term] id: ZFA:0005808 name: proepicardial cluster namespace: zebrafish_anatomy def: "Transient cluster of cardiac progenitor cells that develops adjacent to the heart and migrates onto the heart to form the epicardium. Proepicardial clusters in Zebrafish form on the pericardial wall, adjacent to the atrioventricular (AV) junction and near the venous pole." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-080218-16, ZFIN:ZDB-PUB-140603-8] comment: Appears after cardiac looping ~30hpf. Derived from mesoderm. synonym: "proepicardial organ" EXACT [ZFIN:ZDB-PUB-080218-16] synonym: "proepicardium" EXACT [ZFIN:ZDB-PUB-140603-8] is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000035 ! Larval:Protruding-mouth relationship: part_of ZFA:0000010 ! cardiovascular system relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2014-07-28T03:01:42Z [Term] id: ZFA:0005809 name: pectinate muscle namespace: zebrafish_anatomy def: "Network of heavily branched muscle in the atrium." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-001026-2] synonym: "pectinate muscles" EXACT PLURAL [] is_a: ZFA:0005280 ! cardiac muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000471 ! atrium relationship: start ZFS:0000040 ! Larval:Days 14-20 created_by: Ceri creation_date: 2014-07-28T04:28:45Z [Term] id: ZFA:0005810 name: trabecular layer of the atrium namespace: zebrafish_anatomy def: "Trabecular layer of the atrial myocardium." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-121030-7] is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001374 ! atrial myocardium relationship: part_of ZFA:0005059 ! trabecular layer relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2014-07-28T04:35:49Z [Term] id: ZFA:0005811 name: heart vasculature namespace: zebrafish_anatomy def: "Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the heart." [GOC:cvs, ORCiD:0000-0002-2244-7917] is_a: ZFA:0005249 ! vasculature relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000114 ! heart relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2014-07-31T10:04:10Z [Term] id: ZFA:0005812 name: coronary artery namespace: zebrafish_anatomy def: "Artery that carries blood from the efferent branchial artery to the cardiac ventricle. The artery runs along the ventral surface of the bulbus arteriosus." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010912-30] synonym: "coronary vessel" EXACT [ZFIN:ZDB-PUB-010912-30] is_a: ZFA:0000005 ! artery relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005811 ! heart vasculature relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2014-07-31T10:05:29Z [Term] id: ZFA:0005813 name: coronary capillary namespace: zebrafish_anatomy def: "Capillaries that innervate the subtrabecular layer of the heart." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010912-30] is_a: ZFA:0005250 ! capillary relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005811 ! heart vasculature relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2014-07-31T10:09:35Z [Term] id: ZFA:0005814 name: coronary vein namespace: zebrafish_anatomy def: "Vein that carries blood from the coronary capillaries to the atrial chamber entering the atrium close to the atrioventricular region." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010912-30] is_a: ZFA:0000082 ! vein relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005811 ! heart vasculature relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2014-07-31T10:11:35Z [Term] id: ZFA:0005815 name: T interneuron namespace: zebrafish_anatomy alt_id: ZFA:0005182 def: "TARGET DEFINITION: Hindbrain interneurons that are part of the reticular formation. The T interneurons receive synaptic input from the Mauthner neuron, from unidentified axons in the mlf, and perhaps from trigeminal sensory fibers. . The axon is T-shaped the proximal segment courses to the midline of the brain and near the midline bifurcates to form an ascending rostral segment and a descending caudal segment. The rostral and caudal segments join the dorsal component of the MLF. The T interneurons are located caudal to CaD and appear to be bilaterally paired. They project to cranial and pectoral motor nuclei." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-588] comment: This term is a leaf node in the zebrafish AO and is not in the CL. subset: cell_slim synonym: "cranial relay neuron" RELATED [ZFIN:ZDB-PUB-110110-13] synonym: "T shaped reticular neuron " RELATED [] synonym: "T-interneuron" EXACT [] synonym: "t-interneuron" EXACT [] xref: TAO:0005182 is_a: ZFA:0005209 ! hindbrain interneuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2014-07-31T02:33:52Z [Term] id: ZFA:0005816 name: dorsal fin protractor namespace: zebrafish_anatomy def: "Anterior longitudinal muscles of the dorsal fin. The dorsal fin protractor originates from the base of the first soft ray of the dorsal fin, extends along the midline just underneath the skin, and inserts at the posterior portion of the skull. Contracting the dorsal protractor will raise the fin." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-060623-21] synonym: "protractor dorsalis" EXACT [] is_a: ZFA:0005145 ! muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000648 ! dorsal fin musculature relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2014-10-27T12:59:02Z [Term] id: ZFA:0005817 name: dorsal fin retractor namespace: zebrafish_anatomy def: "Anterior longitudinal muscles of the dorsal fin. That originates from the caudal end of the dorsal fin base, stretches along the midline between the right and left epaxial muscles, and inserts at the dorsal base of the tail fin. Contracting the dorsal retractor will lower the fin." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-060623-21] synonym: "retractor dorsalis" EXACT [] is_a: ZFA:0005145 ! muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000648 ! dorsal fin musculature relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2014-10-27T01:05:51Z [Term] id: ZFA:0005818 name: superficial caudal fin musculature namespace: zebrafish_anatomy def: "The layer of caudal fin musculature immediately under the integument that originate from the vertebral column and insert at the base of caudal fin rays." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-060623-21] is_a: ZFA:0000628 ! caudal fin musculature relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2014-10-29T04:13:54Z [Term] id: ZFA:0005819 name: deep caudal fin musculature namespace: zebrafish_anatomy def: "The layer of caudal fin musculature immediately under the superficial caudal fin musculature that originate from the vertebral column and insert at the base of caudal fin rays. The three most caudal vertebrae and the hypurals serve as attachment sites for these muscles." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-060623-21] is_a: ZFA:0000628 ! caudal fin musculature relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2014-10-29T04:16:13Z [Term] id: ZFA:0005820 name: ventral caudal adductor namespace: zebrafish_anatomy def: "Paired, deep caudal fin muscles that arise broadly from the hypurals and extends dorsocaudally where the fiber bundles converge into a narrow insertion site on the 5th caudal fin ray." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-060623-21] synonym: "ACV" RELATED [] synonym: "adductor caudalis ventralis" EXACT [] is_a: ZFA:0005268 ! adductor muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000902 ! hypural muscle relationship: part_of ZFA:0005819 ! deep caudal fin musculature relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2014-10-30T09:51:20Z [Term] id: ZFA:0005821 name: ventral interfilamental caudal muscle namespace: zebrafish_anatomy def: "Paired superficial caudal fin muscle that has a narrow attachment site along the midline posterior to the attachment of the lateralis superficialis ventralis and fans out to attach broadly in a region between the 12th and 16th caudal fin ray." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-060623-21] synonym: "ICV" RELATED [] synonym: "interfilamenti caudalis ventralis" EXACT [] is_a: ZFA:0005277 ! skeletal muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005818 ! superficial caudal fin musculature relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2014-10-30T10:11:24Z [Term] id: ZFA:0005822 name: dorsal interfilamental caudal muscle namespace: zebrafish_anatomy def: "Paired superficial caudal fin muscle that has a narrow attachment site along the midline posterior to the attachment of the lateralis superficialis dorsalis and fans out to attach broadly in a region between the 4th and 8th caudal fin ray." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-060623-21] synonym: "ICD" RELATED [] synonym: "interfilamenti caudalis dorsalis " EXACT [] is_a: ZFA:0005277 ! skeletal muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005818 ! superficial caudal fin musculature relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2014-10-30T10:14:35Z [Term] id: ZFA:0005823 name: external lateral dorsal muscle namespace: zebrafish_anatomy def: "Paired superficial caudal fin muscle that originates from a broad base at the midline and narrows toward its attachment at the dorsal tip of the caudal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-060623-21] synonym: "lateralis superficialis dorsalis" EXACT [] synonym: "LSD" RELATED [] is_a: ZFA:0005277 ! skeletal muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005818 ! superficial caudal fin musculature relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2014-10-30T12:34:51Z [Term] id: ZFA:0005824 name: deep lateral ventral muscle namespace: zebrafish_anatomy def: "Paired superficial caudal fin muscle that is located ventrally and extends from the myoseptum to the ventral tip of the caudal fin where it attaches in the region of the second lowest (eighteenth) long fin ray." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-060623-21] synonym: "lateralis profundus ventralis " EXACT [] synonym: "LPV" RELATED [] is_a: ZFA:0005277 ! skeletal muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005818 ! superficial caudal fin musculature relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2014-10-30T12:44:54Z [Term] id: ZFA:0005825 name: deep lateral dorsal muscle namespace: zebrafish_anatomy def: "Paired superfical caudal fin muscle that is located dorsally and extends from the myoseptum to the dorsal tip of the caudal fin where it attaches in the region of the second upper long fin ray." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-060623-21] synonym: "lateralis profundus dorsalis" EXACT [] synonym: "LPD" RELATED [] is_a: ZFA:0005277 ! skeletal muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005818 ! superficial caudal fin musculature relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2014-10-30T01:24:56Z [Term] id: ZFA:0005826 name: tri-tipped trabecula namespace: zebrafish_anatomy def: "Cardiac muscle located in the trabecular layer of the ventricle that is attached to the base of the AV and BV valves. It is similar to the papillary muscle in mammals and birds but, does not attach to the ends of the valve leaflets." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-121030-7] is_a: ZFA:0005280 ! cardiac muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005060 ! trabecular layer of ventricle relationship: start ZFS:0000035 ! Larval:Protruding-mouth created_by: Ceri creation_date: 2015-02-19T03:45:32Z [Term] id: ZFA:0005827 name: transverse band namespace: zebrafish_anatomy def: "Cardiac muscle located in the trabecular layer of the ventricle that spans the central lumen near the ventricular apex. The transverse muscle band superficially resembles the septomarginal trabecula found in reptilian and mammalian hearts in that it spans the ventricle." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-121030-7] is_a: ZFA:0005280 ! cardiac muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005060 ! trabecular layer of ventricle relationship: start ZFS:0000035 ! Larval:Protruding-mouth created_by: Ceri creation_date: 2015-02-19T03:48:37Z [Term] id: ZFA:0005828 name: kappe olfactory receptor neuron namespace: zebrafish_anatomy def: "An olfactory receptor cells with apical microvilli. The pear shaped soma is located in the apical region of the olfactory epithelium. They project to a single glomerulus, mdG5." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-140416-5] subset: cell_slim synonym: "kappe neuron" EXACT [] is_a: ZFA:0009125 ! olfactory receptor cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2015-02-20T10:55:06Z [Term] id: ZFA:0005829 name: Schlemm's canal namespace: zebrafish_anatomy def: "Vessel that drains aqueous humor from the eye." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-140728-8] comment: ZDB-PUB-140728-8 says the canal has lymphatic-like. is_a: ZFA:0005249 ! vasculature relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000107 ! eye relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2015-02-23T10:20:30Z [Term] id: ZFA:0005830 name: hematopoietic cell namespace: zebrafish_anatomy def: "A cell of a hematopoietic lineage." [CL:curator] subset: cell_slim synonym: "haematopoietic cell" EXACT [] synonym: "haemopoietic cell" RELATED [] synonym: "hemopoietic cell" EXACT [] xref: CL:0000988 is_a: ZFA:0009000 ! cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2015-02-27T09:55:34Z [Term] id: ZFA:0005831 name: facial lymphatic network namespace: zebrafish_anatomy def: "Interconnected lymph vasculature in the anterior portion of the head." [GOC:cvs, ORCID:0000-0002-2244-7917, ZFIN:ZDB-PUB-120529-43] synonym: "facial lymphatics" RELATED [] is_a: ZFA:0005105 ! lymph vasculature relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001114 ! head relationship: start ZFS:0000032 ! Pharyngula:High-pec created_by: Ceri creation_date: 2015-04-21T03:16:49Z [Term] id: ZFA:0005832 name: lymphatic branchial arch 1 namespace: zebrafish_anatomy def: "Superficial lymph vessel that is part of pharyngeal arch 3. The vessel sprouts from the lateral facial lymph vessel." [GOC:cvs, ORCID:0000-0002-2244-7917, ZFIN:ZDB-PUB-120529-43] synonym: "LAA1" EXACT [ZFIN:ZDB-PUB-120529-43] is_a: ZFA:0005844 ! lymph vessel relationship: develops_from ZFA:0005837 ! lateral facial lymph vessel relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001606 ! pharyngeal arch 3 relationship: part_of ZFA:0005003 ! pharyngeal vasculature relationship: part_of ZFA:0005831 ! facial lymphatic network relationship: start ZFS:0000036 ! Larval:Day 4 created_by: Ceri creation_date: 2015-04-21T04:16:23Z [Term] id: ZFA:0005833 name: lymphatic branchial arch 2 namespace: zebrafish_anatomy def: "Superficial lymph vessel that is part of pharyngeal arch 4. The vessel sprouts from the lateral facial lymph vessel." [GOC:cvs, ORCID:0000-0002-2244-7917, ZFIN:ZDB-PUB-120529-43] synonym: "LAA2" EXACT [ZFIN:ZDB-PUB-120529-43] is_a: ZFA:0005844 ! lymph vessel relationship: develops_from ZFA:0005837 ! lateral facial lymph vessel relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001607 ! pharyngeal arch 4 relationship: part_of ZFA:0005003 ! pharyngeal vasculature relationship: part_of ZFA:0005831 ! facial lymphatic network relationship: start ZFS:0000037 ! Larval:Day 5 created_by: Ceri creation_date: 2015-04-22T10:05:13Z [Term] id: ZFA:0005834 name: lymphatic branchial arch 3 namespace: zebrafish_anatomy def: "Superficial lymph vessel that is part of pharyngeal arch 5. The vessel sprouts from the lateral facial lymph vessel." [GOC:cvs, ORCID:0000-0002-2244-7917, ZFIN:ZDB-PUB-120529-43] synonym: "LAA3" EXACT [ZFIN:ZDB-PUB-120529-43] is_a: ZFA:0005844 ! lymph vessel relationship: develops_from ZFA:0005837 ! lateral facial lymph vessel relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001608 ! pharyngeal arch 5 relationship: part_of ZFA:0005003 ! pharyngeal vasculature relationship: part_of ZFA:0005831 ! facial lymphatic network relationship: start ZFS:0000037 ! Larval:Day 5 created_by: Ceri creation_date: 2015-04-22T10:06:52Z [Term] id: ZFA:0005835 name: lymphatic branchial arch 4 namespace: zebrafish_anatomy def: "Superficial lymph vessel that is part of pharyngeal arch 6. The vessel sprouts from the lateral facial lymph vessel." [GOC:cvs, ORCID:0000-0002-2244-7917, ZFIN:ZDB-PUB-120529-43] synonym: "LAA4 " EXACT [ZFIN:ZDB-PUB-120529-43] is_a: ZFA:0005844 ! lymph vessel relationship: develops_from ZFA:0005837 ! lateral facial lymph vessel relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001610 ! pharyngeal arch 7 relationship: part_of ZFA:0005003 ! pharyngeal vasculature relationship: part_of ZFA:0005831 ! facial lymphatic network relationship: start ZFS:0000038 ! Larval:Day 6 created_by: Ceri creation_date: 2015-04-22T10:18:37Z [Term] id: ZFA:0005836 name: facial lymphatic sprout namespace: zebrafish_anatomy def: "Lymphangiogenic sprout that originates from the common cardinal vein and extends along the primary head sinus." [GOC:cvs, ORCID:0000-0002-2244-7917, ZFIN:ZDB-PUB-120529-43] comment: Although a facial lymphatic vessel has previously been described using lymphangiography in 5-week-old zebrafish (Yaniv et al., 2006), we are not sure whether\nthis previously described vessel is connected to, or derived from, the FL network that we have identified (ZDB-PUB-120529-43). synonym: "FLS" EXACT [] is_a: ZFA:0005603 ! lymphangiogenic sprout relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0005831 ! facial lymphatic network relationship: start ZFS:0000032 ! Pharyngula:High-pec created_by: Ceri creation_date: 2015-04-22T12:15:12Z [Term] id: ZFA:0005837 name: lateral facial lymph vessel namespace: zebrafish_anatomy def: "Superfical lymph vessel part of the facial lymphatic network that develops from the facial lymphatic sprout. The lateral facial lymph vessel runs toward the mandibular arch and tracks around the eye toward the jaw." [GOC:cvs, ORCID:0000-0002-2244-7917, ZFIN:ZDB-PUB-120529-43] synonym: "lateral facial lymphatic" EXACT [] synonym: "LFL" EXACT [] is_a: ZFA:0005844 ! lymph vessel relationship: develops_from ZFA:0005836 ! facial lymphatic sprout relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005831 ! facial lymphatic network relationship: start ZFS:0000035 ! Larval:Protruding-mouth created_by: Ceri creation_date: 2015-04-22T12:41:36Z [Term] id: ZFA:0005838 name: otolithic lymph vessel namespace: zebrafish_anatomy def: "Facial lymphatic vessel that sprouts from the lateral facial lymph vessel. The path lies parallel to the posterior cerebral vein but is not in contact with a blood vessel." [GOC:cvs, ORCID:0000-0002-2244-7917, ZFIN:ZDB-PUB-120529-43] synonym: "otolithic lymphatic vessel" EXACT [ZFIN:ZDB-PUB-120529-43] is_a: ZFA:0005844 ! lymph vessel relationship: develops_from ZFA:0005837 ! lateral facial lymph vessel relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005831 ! facial lymphatic network relationship: start ZFS:0000035 ! Larval:Protruding-mouth created_by: Ceri creation_date: 2015-04-22T02:06:44Z [Term] id: ZFA:0005839 name: medial facial lymph vessel namespace: zebrafish_anatomy def: "Facial lymph vessel that sprouts from the lateral facial lymph vessel. The path of the medial vessel runs ventromedially towards the ventral aorta." [GOC:cvs, ORCID:0000-0002-2244-7917, ZFIN:ZDB-PUB-120529-43] synonym: "medial facial lymphatic" EXACT [] synonym: "MFL " EXACT [] is_a: ZFA:0005844 ! lymph vessel relationship: develops_from ZFA:0005837 ! lateral facial lymph vessel relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005831 ! facial lymphatic network relationship: start ZFS:0000036 ! Larval:Day 4 created_by: Ceri creation_date: 2015-04-23T01:49:47Z [Term] id: ZFA:0005840 name: intestinal lymphatic network namespace: zebrafish_anatomy def: "Lymph vasculature surrounding the intestines." [GOC:cvs, ORCID:0000-0002-2244-7917, ZFIN:ZDB-PUB-120529-43] synonym: "" RELATED [] synonym: "intestinal lymphatics" EXACT [] is_a: ZFA:0005105 ! lymph vasculature relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000036 ! Larval:Day 4 created_by: Ceri creation_date: 2015-04-30T11:15:28Z [Term] id: ZFA:0005841 name: upper right intestinal lymph vessel namespace: zebrafish_anatomy def: "Lymph vessel that follows the supraintestinal artery." [GOC:CVS, ORCID:0000-0002-2244-7917, ZFIN:ZDB-PUB-120529-43] synonym: "UR-IL" EXACT [ZFIN:ZDB-PUB-120529-43] is_a: ZFA:0005844 ! lymph vessel relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005843 ! right intestinal lymphatics relationship: start ZFS:0000037 ! Larval:Day 5 created_by: Ceri creation_date: 2015-04-30T11:25:27Z [Term] id: ZFA:0005842 name: lower right intestinal lymph vessel namespace: zebrafish_anatomy def: "Pair of lymph vessel that follows the right subintestinal vein. At 6 dpf, the LR-IL appears to bifurcate and form two separate vessels that both run in close proximity to one another along the right sub intestinal vein. These vessels are difficult to distinguish from each other at 6dp." [GOC:cvs, ORCID:0000-0002-2244-7917, ZFIN:ZDB-PUB-120529-43] synonym: "LR-IL" EXACT [] is_a: ZFA:0005844 ! lymph vessel relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005843 ! right intestinal lymphatics relationship: start ZFS:0000037 ! Larval:Day 5 created_by: Ceri creation_date: 2015-04-30T11:28:11Z [Term] id: ZFA:0005843 name: right intestinal lymphatics namespace: zebrafish_anatomy def: "Lymph vessels that are on the right side of the intestine." [GOC:cvs, ORCID:0000-0002-2244-7917] is_a: ZFA:0005840 ! intestinal lymphatic network relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000036 ! Larval:Day 4 created_by: Ceri creation_date: 2015-04-30T11:31:28Z [Term] id: ZFA:0005844 name: lymph vessel namespace: zebrafish_anatomy def: "Any of the tubular multi-tissue structures through which lymph moves in the body. These vessels collect and drain fluids and macromolecules from interstitial spaces throughout the animal." [GOC:cvs, ORCID:0000-0002-2244-7917] is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005105 ! lymph vasculature relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2015-04-30T11:44:00Z [Term] id: ZFA:0005845 name: lower left intestinal lymph vessel namespace: zebrafish_anatomy def: "Lymph vessel that extends along the left subintestinal vein." [GOC:cvs, ORCID:0000-0002-2244-7917, ZFIN:ZDB-PUB-120529-43] synonym: "LL-IL" EXACT [] synonym: "lower left intestinal lymphatic" EXACT [] is_a: ZFA:0005844 ! lymph vessel relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005846 ! left intestinal lymphatics relationship: start ZFS:0000037 ! Larval:Day 5 created_by: Ceri creation_date: 2015-04-30T11:49:08Z [Term] id: ZFA:0005846 name: left intestinal lymphatics namespace: zebrafish_anatomy def: "Lymph vessels that are on the left side of the intestine. These do not run as far posteriorly as the right intestinal lymphatics." [GOC:cvs, ORCID:0000-0002-2244-7917, ZFIN:ZDB-PUB-120529-43] is_a: ZFA:0005840 ! intestinal lymphatic network relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000036 ! Larval:Day 4 created_by: Ceri creation_date: 2015-04-30T11:52:58Z [Term] id: ZFA:0005847 name: upper left intestinal lymph vessel namespace: zebrafish_anatomy def: "Lymph vessel on the left of the intestine that runs parallel to the upper right intestinal lymph vessel. There does not appear to be an associated blood vessel." [GOC:cvs, ORCID:0000-0002-2244-7917, ZFIN:ZDB-PUB-120529-43] synonym: "UL-IL" EXACT [] is_a: ZFA:0005844 ! lymph vessel relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005846 ! left intestinal lymphatics relationship: start ZFS:0000037 ! Larval:Day 5 created_by: Ceri creation_date: 2015-04-30T12:28:46Z [Term] id: ZFA:0005848 name: intestinal interlymphatic vessel namespace: zebrafish_anatomy def: "Lymph vessel that connects lymph vessels within the intestinal lymphatic network." [GOC:cvs, ORCID:0000-0002-2244-7917] is_a: ZFA:0005844 ! lymph vessel relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005840 ! intestinal lymphatic network relationship: start ZFS:0000037 ! Larval:Day 5 created_by: Ceri creation_date: 2015-04-30T01:40:05Z [Term] id: ZFA:0005849 name: ceratobranchial 5 replacement tooth namespace: zebrafish_anatomy def: "Is a multi-tissue structure composed of dentine, enameloid and tooth pulp that develops from the dental organ. These structures successively replace the primary ceratobranchial teeth." [GOC:cvs, ORCID:0000-0002-2244-7917, ZFIN:ZDB-PUB-001208-4] is_a: ZFA:0000694 ! ceratobranchial 5 tooth relationship: develops_from ZFA:0005138 ! dental organ relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000035 ! Larval:Protruding-mouth creation_date: 2015-06-19T12:48:15Z [Term] id: ZFA:0005850 name: nucleus of the caudal commissure namespace: zebrafish_anatomy def: "A cluster of neurons first visible in the embryonic diencephalon located in the dorsolateral brain just posterior to the posterior commissure, that project growth cones ventrally along the posterior commissure to the anterior tegmentum where the PC intersects two longitudinal tracts, the tract of the postoptic commissure (TPOC) and the medial longitudinal fasciculus (MLF). Once at the intersection, nuc PC growth cones turn posteriorly onto the TPOC in the dorsal tegmentum and follow it to the hindbrain." [GOC:cvs, ORCID:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-167, ZFIN:ZDB-PUB-961014-170] synonym: " nuc PC" EXACT [] synonym: "nTPC" RELATED [] synonym: "nucleus of posterior commissure" EXACT [] synonym: "nucleus of the tract of the posterior commissure " RELATED [] is_a: ZFA:0001659 ! diencephalic nucleus relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2015-06-19T03:27:22Z [Term] id: ZFA:0005851 name: ceratobranchial 5 primary tooth namespace: zebrafish_anatomy is_a: ZFA:0000694 ! ceratobranchial 5 tooth relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000033 ! Hatching:Long-pec created_by: Ceri creation_date: 2015-07-01T04:53:58Z [Term] id: ZFA:0005852 name: replacement tooth 4V namespace: zebrafish_anatomy def: "Ceratobranchial 5 tooth which is posterior to tooth 3V and anterior to tooth 5V in the ventral tooth row. This tooth develops from the dental epithelium at the position of primary tooth 4V." [GOC:cvs, ORCiD:0000-0002-2244-7917] is_a: ZFA:0005849 ! ceratobranchial 5 replacement tooth relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001137 ! ventral tooth row relationship: start ZFS:0000035 ! Larval:Protruding-mouth created_by: Ceri creation_date: 2015-07-01T04:55:16Z [Term] id: ZFA:0005853 name: replacement tooth 5V namespace: zebrafish_anatomy def: "Ceratobranchial 5 tooth which is the posteriormost tooth in the ventral tooth row. This tooth develops from the dental epithelium at the position of primary tooth 5V." [GOC:cvs, ORCiD:0000-0002-2244-7917] is_a: ZFA:0005849 ! ceratobranchial 5 replacement tooth relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001137 ! ventral tooth row relationship: start ZFS:0000038 ! Larval:Day 6 created_by: Ceri creation_date: 2015-07-02T09:04:21Z [Term] id: ZFA:0005854 name: replacement tooth 3V namespace: zebrafish_anatomy def: "Ceratobranchial 5 tooth which is posterior to tooth 2V and anterior to tooth 4V in the ventral tooth row. This tooth develops from the dental epithelium at the position of primary tooth 3V." [GOC:cvs, ORCiD:0000-0002-2244-7917] is_a: ZFA:0005849 ! ceratobranchial 5 replacement tooth relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001137 ! ventral tooth row relationship: start ZFS:0000038 ! Larval:Day 6 created_by: Ceri creation_date: 2015-07-02T09:05:23Z [Term] id: ZFA:0005855 name: replacement tooth 2V namespace: zebrafish_anatomy def: "Ceratobranchial 5 tooth which is posterior to tooth 1V and anterior to tooth 3V in the ventral tooth row. This tooth develops from the dental epithelium at the position of primary tooth 2V." [GOC:cvs, ORCiD:0000-0002-2244-7917] is_a: ZFA:0005849 ! ceratobranchial 5 replacement tooth relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001137 ! ventral tooth row relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2015-07-02T09:18:29Z [Term] id: ZFA:0005856 name: replacement tooth 1V namespace: zebrafish_anatomy def: "Ceratobranchial 5 tooth which is the anteriormost tooth in the ventral tooth row. This tooth develops from the dental epithelium at the position of primary tooth 1V." [GOC:cvs, ORCiD:0000-0002-2244-7917] is_a: ZFA:0005849 ! ceratobranchial 5 replacement tooth relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001137 ! ventral tooth row relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2015-07-02T09:19:35Z [Term] id: ZFA:0005857 name: bile namespace: zebrafish_anatomy def: "Zebrafish bile contains the bile alcohol cyprinol sulfate." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-120822-8] is_a: ZFA:0001487 ! portion of organism substance relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2015-07-31T11:15:59Z [Term] id: ZFA:0005858 name: hyaloid capillaries namespace: zebrafish_anatomy def: "Capillaries that branch from the hyaloid artery and drain into the hyaloid vein. The hyaloid capillaries are located behind the lens and may be transient." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-150419-5] is_a: ZFA:0005046 ! hyaloid vessel is_a: ZFA:0005250 ! capillary relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2015-08-17T04:43:51Z [Term] id: ZFA:0005859 name: ceratohyal-interhyal joint namespace: zebrafish_anatomy def: "Joint that articulates the interhyal skeletal element and ceratohyal skeletal element. The ceratohyal-interhyal joint is paired." [GOC:cvs, ORCID:0000-0002-2244-7917, ZFIN:ZDB-PUB-970210-30] is_a: ZFA:0001596 ! joint relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2015-09-09T01:15:07Z [Term] id: ZFA:0005860 name: interhyal-hyosymplectic joint namespace: zebrafish_anatomy def: "Joint that articulates the interhyal element and the hyosymplectic element. The interhyal-hyosymplectic joint is paired." [GOC:cvs, ORCID:0000-0002-2244-7917, ZFIN:ZDB-PUB-970210-30] is_a: ZFA:0001596 ! joint relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2015-09-09T01:28:54Z [Term] id: ZFA:0005861 name: opercle-hyosymplectic joint namespace: zebrafish_anatomy def: "Joint that articulates the opercle and they hyosymplectic. The opercle-hyosymplectic joint is paired." [GOC:cvs, ORCID:0000-0002-2244-7917, ZFIN:ZDB-PUB-970210-30] is_a: ZFA:0001596 ! joint relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2015-09-09T01:33:46Z [Term] id: ZFA:0005862 name: ovarian lymph vessel namespace: zebrafish_anatomy def: "Lymph vessels within the ovary. These vessels are located in the interstitium between ovarian follicles and appear to envelop arterioles." [GOC:CVS, ORCID:0000-0002-2244-7917, ZFIN:ZDB-PUB-130218-10] is_a: ZFA:0005844 ! lymph vessel relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000040 ! Larval:Days 14-20 created_by: Ceri creation_date: 2015-10-28T12:00:39Z [Term] id: ZFA:0005863 name: pectoral protractor namespace: zebrafish_anatomy def: "Pectoral fin muscle. Links pectoral fin and branchial movement and stabilizes the pectoral girdle. Thought to be the teleost homologue of the cucullaris muscle group." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-110803-26] synonym: "protractor pectoralis" EXACT [ZFIN:ZDB-PUB-110803-26] is_a: ZFA:0005145 ! muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000563 ! pectoral fin musculature relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2015-10-28T04:41:12Z [Term] id: ZFA:0005864 name: retinotectal tract namespace: zebrafish_anatomy def: "Portion of optic tract that innervates the optic tectum." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-1095, ZFIN:ZDB-PUB-961014-148] is_a: ZFA:0001682 ! white matter relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000252 ! optic tract relationship: start ZFS:0000033 ! Hatching:Long-pec created_by: Ceri creation_date: 2016-01-11T03:48:45Z [Term] id: ZFA:0005865 name: reticulospinal neuron namespace: zebrafish_anatomy def: "Neuron with the large soma in the brain with an axon projecting caudally to the spinal cord." [GOC:cvs, ORCID:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-594] is_a: ZFA:0009191 ! CNS interneuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2016-01-12T10:33:08Z [Term] id: ZFA:0005866 name: vestibulospinal neuron namespace: zebrafish_anatomy def: "CNS interneuron with a soma located in a cluster in the lateral wall of the medulla, with dendrites confined to the neuropil, that has connections to the vestibular and lateral line neurons." [ZFIN:ZDB-PUB-961014-572] synonym: "V" RELATED [] is_a: ZFA:0009191 ! CNS interneuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2016-01-12T11:25:07Z [Term] id: ZFA:0005867 name: cephalic mesoderm namespace: zebrafish_anatomy def: "Mesoderm part of the head." [GOC:cvs, ORCiD:0000-0002-2244-7917\,] is_a: ZFA:0000041 ! mesoderm relationship: develops_from ZFA:0000414 ! presumptive cephalic mesoderm relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: part_of ZFA:0001114 ! head relationship: start ZFS:0000024 ! Segmentation:5-9 somites created_by: Ceri creation_date: 2016-01-14T02:01:33Z [Term] id: ZFA:0005868 name: griseum tectale namespace: zebrafish_anatomy def: "Rostral cell mass bordering the pretectum. The cells are stained with the gene nurod and are Hu positive. The region is named for its presumed homology to the avian griseum tectale." [ZFIN:ZDB-PUB-070711-1] synonym: "tectal grey " EXACT [] is_a: ZFA:0001665 ! midbrain nucleus relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000445 ! optic tectum relationship: start ZFS:0000033 ! Hatching:Long-pec created_by: Ceri creation_date: 2016-01-22T12:54:41Z [Term] id: ZFA:0005869 name: cerebellar plate namespace: zebrafish_anatomy def: "Multi-tissue structure that is made up of the external granular layer and the ventral proliferative layer." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-070711-1] is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000029 ! hindbrain relationship: start ZFS:0000032 ! Pharyngula:High-pec created_by: Ceri creation_date: 2016-02-02T11:33:30Z [Term] id: ZFA:0005870 name: cerebellar plate ventral proliferative layer namespace: zebrafish_anatomy def: "Proliferative zone on the ventral side of the cerebellar plate." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-070711-1] is_a: ZFA:0000098 ! proliferative region relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0005869 ! cerebellar plate relationship: start ZFS:0000032 ! Pharyngula:High-pec created_by: Ceri creation_date: 2016-02-02T11:45:44Z [Term] id: ZFA:0005871 name: region of the nucleus of the medial longitudinal fascicle namespace: zebrafish_anatomy def: "Portion of tissue in the midbrain that will develop into the nucleus of the medial longitudinal fasciculus synencephalon." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-070711-1] is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000128 ! midbrain relationship: start ZFS:0000026 ! Segmentation:14-19 somites created_by: Ceri creation_date: 2016-02-02T11:47:50Z [Term] id: ZFA:0005872 name: external granular layer of the cerebellar plate def: "Proliferative region that forms on peripheral side of the cerebellar plate." [GOC:cvs, ORCiD:0000-0002-2244-7917, ORDCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-070711-1] synonym: "cerebellar plate peripheral proliferative zone" RELATED [] synonym: "EGL" EXACT [] is_a: ZFA:0000098 ! proliferative region relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0005869 ! cerebellar plate relationship: start ZFS:0000035 ! Larval:Protruding-mouth created_by: Ceri creation_date: 2016-02-02T11:50:39Z [Term] id: ZFA:0005873 name: noradrenergic neuron namespace: zebrafish_anatomy def: "A neuron that releases norephinephrine (noradrenaline) as a neurotransmitter." [CL:Curator] subset: cell_slim xref: CL:0008025 is_a: ZFA:0009214 ! norepinephrine secreting cell is_a: ZFA:0009248 ! neuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2016-03-22T02:18:57Z [Term] id: ZFA:0005874 name: spiral neuron namespace: zebrafish_anatomy def: "Spiral neurons are excitatory interneurons located in rhombomere 3 and have contralateral projections that cross the midline forming commissures in rhombomere 3. After crossing the midline the two commissures fuse and project caudally synapsing with the Mauthner neuron. As they enter the axon cap, spiral fiber neurons lose their myelin and wrap around the axon hillock in a stereotyped spiral, where they make both electrical and glutamatergic synapses on the M cell axon close to the M-cell soma and with one another. Spiral neurons produced biphasic excitatory postsynaptic potentials (EPSPs) in the contralateral M-cell with a short latency." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010711-2, ZFIN:ZDB-PUB-110110-13, ZFIN:ZDB-PUB-150512-4] is_a: ZFA:0005209 ! hindbrain interneuron relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000948 ! rhombomere 3 relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2016-03-23T01:14:15Z [Term] id: ZFA:0005875 name: tract of the commissure of the caudal tuberculum namespace: zebrafish_anatomy def: "Tract that extends from the intersection of the tract of the postoptic commissure and supraoptic tract that projects caudally across the hypothalamus and into the commissure of the caudal tuberculum. The axons appear to originate from a symmetric group of neurons in the forebrain that travel caudally into the diencephalon and then decussate, with some axons continuing to travel longitudinally and join other axons crossing the midline. There does not appear to be a clear ortholog of the TCPT in mammals; and the function(s) of the TCPT are not currently known." [GOC:cvs, GOC:dsf, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-1268] comment: This tract was originally identified in zebrafish by Wilson et al., 1990. synonym: " TCPT" EXACT [ZFIN:ZDB-PUB-961014-1268] synonym: "tract of the commissure of the posterior tuberculum" EXACT [] is_a: ZFA:0001682 ! white matter relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000491 ! commissure of the caudal tuberculum relationship: start ZFS:0000029 ! Pharyngula:Prim-5 created_by: Ceri creation_date: 2016-06-07T10:08:17Z [Term] id: ZFA:0005876 name: anterior chamber eye namespace: zebrafish_anatomy def: "The space between the cornea and lens in the anterior segment of the eye where the aqueous humor is located." [GOC:cvs, ORCiD:0000-0002-2244-7917] is_a: ZFA:0001643 ! anatomical space relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005566 ! anterior segment eye relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2016-10-13T15:42:03Z [Term] id: ZFA:0005877 name: commissure of the tract of the commissure of the caudal tuberculum namespace: zebrafish_anatomy def: "Commissure that is formed by a subset of TCPT axons that cross the midline in the diencephalon. The TCPTc does not appear to cross with other commissures. The initial crossing of the TCPTc occurs at approximately 36 hpf." [GOC:cvs, GOC:dsf, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-120419-3.] synonym: "Commissure of the TCPT" EXACT [] is_a: ZFA:0000338 ! diencephalic white matter relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000031 ! Pharyngula:Prim-25 created_by: Ceri creation_date: 2016-10-18T10:07:14Z [Term] id: ZFA:0005878 name: oogonia namespace: zebrafish_anatomy def: "An undifferentiated germ cell that proliferates rapidly and gives rise to oocytes. In zebrafish oogonia are round cells, with centrally located nucleoli, which are strongly basophilic. Oogonia in larva zebrafish fish are often found in clusters of two or four cells, corresponding to the second, or third oogonial divisions, presumably arising from mitotic divisions of primordial germ cells." [GOC:cvs, GOC:tfm, ISBN:0721662544, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-120718-30] xref: CL:0000024 is_a: ZFA:0009016 ! germ line cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000413 ! gonad relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2016-12-14T12:05:24Z [Term] id: ZFA:0005879 name: seminiferous tubule namespace: zebrafish_anatomy def: "Tubules formed by the seminiferous epithelium that contains spermatogenic cyst surrounded by somatic support cells, called Sertoli cells. The lumen of he seminiferous tubules connects to the sperm or efferent duct." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-090407-9] synonym: "seminiferous tubules" EXACT PLURAL [] synonym: "sperm duct" BROAD [] is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000598 ! testis relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2017-04-28T11:17:00Z [Term] id: ZFA:0005880 name: seminiferous epithelium namespace: zebrafish_anatomy def: "Epithelium that lines the seminiferous tubules." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-090407-9] is_a: ZFA:0001486 ! epithelium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005879 ! seminiferous tubule relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2017-05-16T12:39:16Z [Term] id: ZFA:0005881 name: tunica propria of seminiferous tubule namespace: zebrafish_anatomy def: "The membranous sheath that surrounding the seminiferous tubule." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-090407-9] is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005879 ! seminiferous tubule relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2017-05-16T12:44:18Z [Term] id: ZFA:0005882 name: spermatogenic cyst namespace: zebrafish_anatomy def: "Structure in the testis formed by cytoplasmic projections of one or two Sertoli cells that surround a single spermatogonium. Sperm production occurs with in the cyst and the spermatogonium divides to generate approximately 1300 mature sperm. A given Sertoli cell is in contact with only one germ cell clone." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-090407-9] is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000598 ! testis relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2017-05-16T12:48:48Z [Term] id: ZFA:0005883 name: tunica albuginea testis namespace: zebrafish_anatomy def: "Membranous sheath that surrounds the testis." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-090407-9] is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000598 ! testis relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2017-05-16T12:51:24Z [Term] id: ZFA:0005884 name: seminiferous tubule lumen namespace: zebrafish_anatomy def: "Lumen of the seminiferous tubule. Mature sperm is stored in the tubular lumen." [GOC:cvs, https://en.wikibooks.org/wiki/The_Zebrafish_in_Toxicology/Spermatogenesis, ORCiD:0000-0002-2244-7917] is_a: ZFA:0001643 ! anatomical space relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005879 ! seminiferous tubule relationship: start ZFS:0000024 ! Segmentation:5-9 somites created_by: Ceri creation_date: 2017-05-16T13:18:07Z [Term] id: ZFA:0005885 name: operculohyoid ligament namespace: zebrafish_anatomy def: "Ligament that connects the anterior apex of the opercle to the posterior end of the ceratohyal. The ligament extends orthogonal and anterior to the opercle." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-161030-16] is_a: ZFA:0001675 ! ligament relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000033 ! Hatching:Long-pec creation_date: 2017-06-12T13:27:26Z [Term] id: ZFA:0005886 name: anterior basicapsular commissure namespace: zebrafish_anatomy def: "Cartilage that attaches the parachordal cartilage to the auditory capsule anterior to the basicapsular fenestra. The anterior basicapsular commissure are paired." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-192] synonym: "anterior basicranial commissure" EXACT [ZFIN:ZDB-PUB-970819-13] is_a: ZFA:0001461 ! chondrocranium cartilage relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0001580 ! neurocranium relationship: start ZFS:0000034 ! Hatching:Pec-fin created_by: Ceri creation_date: 2017-10-20T11:38:57Z [Term] id: ZFA:0005887 name: posterior basicapsular commissure namespace: zebrafish_anatomy def: "Cartilage that attaches the parachordal cartilage to the auditory capsule posterior of the basicapsular fenestra. The posterior basicapsular commissure are paired." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-192] synonym: "posterior basicranial commissure" EXACT [ZFIN:ZDB-PUB-970819-13] is_a: ZFA:0001461 ! chondrocranium cartilage relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0001580 ! neurocranium relationship: start ZFS:0000034 ! Hatching:Pec-fin created_by: Ceri creation_date: 2017-10-20T11:42:11Z [Term] id: ZFA:0005888 name: lateral basicapsular commissure namespace: zebrafish_anatomy def: "Cartilage that grows from the auditory capsule medially toward the anterior end of the parachordal cartilage to enclose the hyomandibular (facial) foramen. The lateral basicapsular commissure are paired." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-970819-13] synonym: " lateral basicranial commissure" EXACT [ZFIN:ZDB-PUB-970819-13] synonym: "lateral commissure " RELATED [ZFIN:ZDB-PUB-970819-13] is_a: ZFA:0001461 ! chondrocranium cartilage relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0001580 ! neurocranium relationship: start ZFS:0000035 ! Larval:Protruding-mouth created_by: Ceri creation_date: 2017-10-20T11:51:14Z [Term] id: ZFA:0005889 name: epiotic-posttemporal joint namespace: zebrafish_anatomy def: "Syndesmosis that connects the posterior lateral edge of the epiotic to the posttemporal. The epiotic-posttemporal joint is paired." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-192] synonym: "epioccipital-posttemporal joint" EXACT [] is_a: ZFA:0005156 ! fibrous joint relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2017-10-20T15:00:45Z [Term] id: ZFA:0005890 name: carotid artery canal namespace: zebrafish_anatomy def: "Canal where the carotid artery enters the cranium. Located between the parasphenoid and prootic bones in adult fish." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-192] is_a: ZFA:0005386 ! foramen relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2017-10-25T14:53:32Z [Term] id: ZFA:0005891 name: epiotic-parietal joint namespace: zebrafish_anatomy def: "Syndesmosis that connects the anterior edge epiotic to the parietal. The epiotic-parietal joint is paired." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-192] synonym: "epioccipital-parietal" EXACT [] is_a: ZFA:0005156 ! fibrous joint relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2017-10-20T15:30:23Z [Term] id: ZFA:0005892 name: lateral occipital foramen namespace: zebrafish_anatomy def: "Foramen that has the exoccipital as the anterior and dorsal rim. The occipital forms the anterior rim during early development." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-192] synonym: "lateral occipital foramina" EXACT PLURAL [ZFIN:ZDB-PUB-961014-192] is_a: ZFA:0005386 ! foramen relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2017-10-20T16:00:30Z [Term] id: ZFA:0005893 name: glossopharyngeal foramen namespace: zebrafish_anatomy def: "Foramen in the exoccipital through which the glossopharyngeal nerve (cranial nerve IX) passes." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-192] is_a: ZFA:0005386 ! foramen relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2017-10-20T16:05:15Z [Term] id: ZFA:0005894 name: vagus foramen namespace: zebrafish_anatomy def: "Foramen in the exoccipital through which the vagus nerve (cranial nerve X) passes." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-192] is_a: ZFA:0005386 ! foramen relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2017-10-20T16:06:35Z [Term] id: ZFA:0005895 name: trigeminal-facial chamber namespace: zebrafish_anatomy def: "Chamber in the prootic where the trunks of the trigeminal facial nerve complex pass from the brain to the outside of the cranium. In the adult, a posteromedial extension from the prootic delimits the medial boundary of the trigeminal-facial chamber. The anterior opening of the trigeminal-facial chamber lies between the prootic and the pterosphenoid." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-192] synonym: "trigeminofacialis chamber" EXACT [] is_a: ZFA:0001643 ! anatomical space relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2017-10-27T16:53:59Z [Term] id: ZFA:0005896 name: anal retractor namespace: zebrafish_anatomy def: "Longitudinal unpaired muscle that attaches to the base of the most posterior ray of the anal fin (usually ray 14) and runs posteriorly into he hypaxial musculature of the caudal fin. The anal retractor pulls the anal fin toward the body." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-171118-8] synonym: "infracarinalis posterior" EXACT [ZFIN:ZDB-PUB-151106-17, ZFIN:ZDB-PUB-180212-2] synonym: "retractor analis" EXACT [ZFIN:ZDB-PUB-171118-8] is_a: ZFA:0005145 ! muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001154 ! anal fin musculature relationship: start ZFS:0000000 ! Unknown created_by: ceriv creation_date: 2018-02-12T10:14:25Z [Term] id: ZFA:0005897 name: anal protractor namespace: zebrafish_anatomy def: "Longitudinal muscle that on the anterior end is continuous with the retractor ischii and on the posterior end inserts into the base of the first anal ray." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-171118-8] synonym: "infracarinalis medius" RELATED [ZFIN:ZDB-PUB-151106-17, ZFIN:ZDB-PUB-180212-2] synonym: "protractor analis" EXACT [ZFIN:ZDB-PUB-171118-8] is_a: ZFA:0005145 ! muscle relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001154 ! anal fin musculature relationship: start ZFS:0000000 ! Unknown created_by: ceriv creation_date: 2018-02-12T10:37:38Z [Term] id: ZFA:0005898 name: caudal hematopoietic tissue namespace: zebrafish_anatomy def: "Tissue that lies between the caudal artery and the caudal vein plexus where definitive hematopoiesis occurs after 48hpf and before the hematopoietic progenitors migrate to the thymus and kidney." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-061227-29, ZFIN:ZDB-PUB-070303-37] synonym: "posterior blood island" RELATED [ZFIN:ZDB-PUB-070303-37] is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000039 ! Larval:Days 7-13 relationship: part_of ZFA:0005023 ! hematopoietic system relationship: start ZFS:0000033 ! Hatching:Long-pec created_by: Ceri creation_date: 2018-02-21T12:40:50Z [Term] id: ZFA:0005899 name: scale focus namespace: zebrafish_anatomy def: "The initial growth point of the scale. In zebrafish the focus is on the anterior edge of the scale." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-180311-2] is_a: ZFA:0000037 ! anatomical structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000277 ! scale relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2018-08-30T16:47:45Z [Term] id: ZFA:0005900 name: scale radius namespace: zebrafish_anatomy def: "Grooves on the scale radiating from the focus. Zebrafish have primary radii that start at the focus and extend to the posterior margin of the scale." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-180311-2] synonym: "scale radii" EXACT PLURAL [] is_a: ZFA:0000037 ! anatomical structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000277 ! scale relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2018-08-30T16:50:48Z [Term] id: ZFA:0005901 name: superior ocular sulcus namespace: zebrafish_anatomy def: "Transient groove in the dorsal eye lined by basal lamina. The groove extends across the dorsal retina to partially separate the nasal and temporal retinal lobes. The sulcus forms soon after optic cup formation and as the eye develops it becomes broader and shallower until it is undetectable." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-180310-10] synonym: "dorsal ocular sulcus" EXACT [] is_a: ZFA:0001690 ! groove relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0001678 ! immature eye relationship: start ZFS:0000027 ! Segmentation:20-25 somites created_by: Ceri creation_date: 2018-09-05T16:23:34Z [Term] id: ZFA:0005902 name: pterygoid process namespace: zebrafish_anatomy def: "A medial cartilaginous spur that develops from the dorsomedial edge of the palatoquadrate. It is derived from cells located in the maxillary prominence of the first pharyngeal arch and gives rise to the metapterygoid." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-100726-23, ZFIN:ZDB-PUB-961014-192] synonym: "Ptp" RELATED [] is_a: ZFA:0005903 ! cartilaginous projection relationship: end ZFS:0000040 ! Larval:Days 14-20 relationship: part_of ZFA:0001399 ! palatoquadrate cartilage relationship: start ZFS:0000035 ! Larval:Protruding-mouth created_by: Ceri creation_date: 2018-09-12T09:53:49Z [Term] id: ZFA:0005903 name: cartilaginous projection namespace: zebrafish_anatomy def: "Skeletal tissue that is an extension of a skeletal element composed of cartilage." [GOC:cvs, ORCiD:0000-0002-2244-7917] is_a: ZFA:0005619 ! skeletal tissue relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2018-09-12T10:11:35Z [Term] id: ZFA:0005904 name: retroarticular process namespace: zebrafish_anatomy def: "A protrusion of cartilage at the posteroventral tip of Meckel's cartilage that gives rise to the retroarticular." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-161203-3] is_a: ZFA:0005903 ! cartilaginous projection relationship: end ZFS:0000037 ! Larval:Day 5 relationship: part_of ZFA:0001205 ! Meckel's cartilage relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2018-09-12T10:37:59Z [Term] id: ZFA:0005905 name: coronoid process namespace: zebrafish_anatomy def: "Cartilaginous protrusion on the posterodorsal region of Meckel's cartilage. The coronoid process of Meckel's cartilage forms the dorsal portion of the articulation with the anteroventral corner of the palatoquadrate." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-060724-1, ZFIN:ZDB-PUB-161203-3] synonym: " coronoid process of Meckel's cartilage" EXACT [] is_a: ZFA:0005903 ! cartilaginous projection relationship: end ZFS:0000040 ! Larval:Days 14-20 relationship: part_of ZFA:0001205 ! Meckel's cartilage relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2018-09-12T14:26:48Z [Term] id: ZFA:0005906 name: Reissner's fiber namespace: zebrafish_anatomy def: "Thread-like fibrous aggregation of secreted molecules extending from the subcommissural organ (SCO) through the ventricular system and central canal to the end of the spinal cord." [GOC:cvs, ISBN:978-0471888895, ZFIN:ZDB-PUB-980205-16] is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000938 ! central canal relationship: start ZFS:0000029 ! Pharyngula:Prim-5 created_by: ceriv creation_date: 2018-11-29T11:06:47Z [Term] id: ZFA:0005907 name: tectal neuropile namespace: zebrafish_anatomy def: "Neuronal tissue that is the arborization field for the majority of the ganglion cell axons, it also holds other incoming axons, for example, from the pretectum and the contralateral tectum, as well as the dendrites and axons of tectal interneurons and projection neurons." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-081218-37] synonym: "synaptic neuropil " RELATED [ZFIN:ZDB-PUB-101101-16] synonym: "tectial lamina" RELATED [ZFIN:ZDB-PUB-081218-37] is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000445 ! optic tectum relationship: start ZFS:0000029 ! Pharyngula:Prim-5 created_by: Ceri creation_date: 2019-01-28T17:08:19Z [Term] id: ZFA:0005908 name: presumptive pretectum proliferative zone namespace: zebrafish_anatomy def: "Region the larval brain that is a forerunner of the adult central and superficial pretectal regions. This region is non ventricular neural proliferation zone." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-030115-8, ZFIN:ZDB-PUB-990406-3] synonym: "M1" EXACT [ZFIN:ZDB-PUB-070711-1] is_a: ZFA:0001105 ! embryonic structure relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000031 ! Pharyngula:Prim-25 created_by: Ceri creation_date: 2019-01-29T16:22:51Z [Term] id: ZFA:0005909 name: presumptive preglomerular region namespace: zebrafish_anatomy def: "Region that gives rise to various caudal tubercular structures in the preglomerular region This region is non ventricular neural proliferation zone and doesn't express GABA." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-020912-2, ZFIN:ZDB-PUB-030115-8] synonym: "early migrated posterior tubercular region" RELATED [ZFIN:ZDB-PUB-070711-1] synonym: "M2" RELATED [ZFIN:ZDB-PUB-070711-1] synonym: "preglomerular anlagen " RELATED [ZFIN:ZDB-PUB-020912-2] is_a: ZFA:0001105 ! embryonic structure relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000030 ! Pharyngula:Prim-15 created_by: Ceri creation_date: 2019-01-29T16:37:24Z [Term] id: ZFA:0005910 name: presumptive ventral entopeduncular nucleus namespace: zebrafish_anatomy def: "Portion of tissue that is presumed to give rise to the entopenduncular nucleus." [ZFIN:ZDB-PUB-040304-8, ZFIN:ZDB-PUB-090914-27] synonym: "M3" NARROW [] is_a: ZFA:0001105 ! embryonic structure relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000031 ! Pharyngula:Prim-25 created_by: Ceri creation_date: 2019-01-30T13:02:59Z [Term] id: ZFA:0005911 name: presumptive lateral nucleus of ventral telencephalon namespace: zebrafish_anatomy def: "Portion of tissue that gives rise to the lateral nucleus of the ventral telencephalon. The area sometimes called M4 does not express GABA or dlx2a." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-090814-14, ZFIN:ZDB-PUB-090914-27] synonym: "lateral nucleus of area ventralis telencepha" RELATED [ZFIN:ZDB-PUB-090814-14] synonym: "M4" RELATED [ZFIN:ZDB-PUB-090814-14] is_a: ZFA:0001105 ! embryonic structure relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000030 ! Pharyngula:Prim-15 created_by: Ceri creation_date: 2019-01-30T13:42:52Z [Term] id: ZFA:0005912 name: endolymphatic sac namespace: zebrafish_anatomy def: "Pouch at the end of the endolymphatic duct that helps regulates pressure on the inner ear. The endolymphatic sac is separated from the endolymphatic duct by a dynamic lamellar barrier. The lamellar barrier is composed of long, thin lamellar sheets that form tongue-and-groove structure or interwoven broadly overlapping structures. In adults, the endolymphatic duct and sac are partially encased within the temporal bone such that the distal end of the endolymphatic sac protrudes out of the temporal bone into the cranial cavity ." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-180622-24] xref: TAO:0002194 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000217 ! inner ear relationship: start ZFS:0000000 ! Unknown creation_date: 2019-04-16T14:25:54Z [Term] id: ZFA:0005913 name: urine namespace: zebrafish_anatomy def: "Organism substance that is the output of the nephron." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-050818-17] is_a: ZFA:0001487 ! portion of organism substance relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown creation_date: 2019-05-02T16:21:42Z [Term] id: ZFA:0005914 name: argentum namespace: zebrafish_anatomy def: "Iridophore layer of iris composed of a outer layer of regularly tiled iridophores and an inner layer of randomly arranged iridophores. The outer regularly tiled iridophores reflect blue green light. The light reflecting crystals in the iris iridophores are composed of anhydrous Beta-guanine." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-180822-3] synonym: "argenta " EXACT PLURAL [] synonym: "iridophore layer iris" EXACT [] is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001238 ! iris relationship: start ZFS:0000032 ! Pharyngula:High-pec created_by: Ceri creation_date: 2019-05-29T15:43:36Z [Term] id: ZFA:0005915 name: iris melanophore layer namespace: zebrafish_anatomy def: "Layer of melanophores that are positioned behind the argenta. The melanophore layer absorbs unfocused light preventing it from reaching the retina." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-180822-3] is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001238 ! iris relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2019-05-29T15:55:27Z [Term] id: ZFA:0005916 name: tapetum lucidum namespace: zebrafish_anatomy def: "Iridophore layer that forms along the dorsal region of the poster segment of the eye. The tapetum is formed by a single layer of Iridophores and is proximal to the photoreceptors and is located in the choroid. The tapetum reflects photons back to the photoreceptors if they were not initially absorbed by the photoreceptors." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-180822-3] synonym: "tapetum cellulosum" RELATED [] is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005229 ! optic choroid relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2019-05-29T16:15:09Z [Term] id: ZFA:0006000 name: intermediate hypothalamus namespace: zebrafish_anatomy def: "Brain structure that lies perpendicular to the longitudinal axis of the embryonic neural tube, is continuous with the rostral hypothalamic proliferation and whose most lateral extent is deflected dorsally within the inferior lobe." [ZFIN:ZDB-PUB-001018-1, ZFIN:ZDB-PUB-020730-6, ZFIN:ZDB-PUB-081114-19] synonym: "Hi" EXACT [] xref: TAO:0006000 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000032 ! hypothalamus relationship: start ZFS:0000033 ! Hatching:Long-pec created_by: giles creation_date: 2009-03-26T02:23:30Z [Term] id: ZFA:0007000 name: macula saccule namespace: zebrafish_anatomy def: "Portion of tissue that is a patch of thickened, pseudostratified epithelium in the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. The macula saccule senses linear acceleration and gravity. In juveniles the macula saccule is oriented vertically in a plane running along the anterioposterior body axis. It covers the medial wall of the saccule along most of its length." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-010912-7] synonym: "saccular macula" EXACT [] xref: TAO:0007000 is_a: ZFA:0000386 ! macula relationship: develops_from ZFA:0000558 ! posterior macula relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000428 ! saccule relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0007001 name: dorso-rostral cluster namespace: zebrafish_anatomy def: "Early-forming telencephalic neural cluster. Neurons of the dorso-rostral cluster (drc) extend axons to form the supra-optic tract (SOT) and the anterior commissure (AC)." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-955] synonym: "dorsal rostral cluster" EXACT [] synonym: "dorsorostral cluster" EXACT [] synonym: "drc" EXACT [] xref: TAO:0007001 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000079 ! telencephalon relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0007002 name: ventro-rostral cluster namespace: zebrafish_anatomy def: "Early-forming neural cluster located in the rostral diencephalon. At 19 h, axons arising from the vrc grow caudally to pioneer the tract of the postoptic commissure (TPOC)." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-955] synonym: "ventral rostral cluster" EXACT [] synonym: "ventrorostral cluster" EXACT [] synonym: "vrc" EXACT [] xref: TAO:0007002 is_a: ZFA:0005575 ! brain nucleus relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000101 ! diencephalon relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0007003 name: ventro-caudal cluster namespace: zebrafish_anatomy def: "Early-forming neural cluster of the ventral midbrain. At 16 h, axons of the vcc grow caudally to pioneer the medial longitudinal fasciculus (MLF), which is part of the larger ventral longitudinal tract (VLT). Later, neurons from this cluster project axons rostrally into the tract of the post-optic commissure (TPOC)." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-955] synonym: "vcc" EXACT [] synonym: "ventral caudal cluster" EXACT [] synonym: "ventrocaudal cluster" EXACT [] xref: TAO:0007003 is_a: ZFA:0005575 ! brain nucleus relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000128 ! midbrain relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0007004 name: epiphyseal cluster namespace: zebrafish_anatomy def: "Early-developing neuronal cluster of the epiphysis. By 24 hpf the pioneer axon of the dorsoventral diencephalic tract (DVDT) has arisen from the ec and grown ventrally. As this axon encounters axons of the TPOC, it makes a near-90 rostral turn and grows rostrally among axons of the TPOC growing in the opposite direction." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-955] synonym: "ec" EXACT [] xref: TAO:0007004 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000019 ! epiphysis relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0007005 name: hemal prezygapophysis namespace: zebrafish_anatomy alt_id: ZFA:0001380 def: "Hemal prezygapophyses are paired, anteromedially directed processes arising from the bases of hemal arches, ligamentously joined to the hemal postzygapophyses of the preceding vertebra. Posterior caudal vertebrae close to the caudal fin lack hemal prezygapophyses." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "haemal prezygapophysis" EXACT [] synonym: "hemal prezygopophysis" EXACT [] xref: TAO:0007005 is_a: ZFA:0001591 ! endochondral bone relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000519 ! hemal arch relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0007006 name: lip namespace: zebrafish_anatomy def: "Surface structure that is one of the fleshy folds surrounding the opening of the mouth." [GOC:ymb, http://www.medterms.com/script/main/art.asp?articlekey=9458, ORCiD:0000-0002-9900-7880] synonym: "lips" EXACT PLURAL [] xref: TAO:0007006 is_a: ZFA:0000292 ! surface structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000547 ! mouth relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0007008 name: ventral intermandibularis anterior namespace: zebrafish_anatomy def: "Is a mandibular muscle that attaches to Meckel's cartilage and functions during jaw closing." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-020703-2, ZFIN:ZDB-PUB-061010-9] synonym: "intermandibularis anterior" EXACT [] synonym: "ventral intermandibulari anterior" EXACT PLURAL [] xref: TAO:0007008 is_a: ZFA:0005145 ! muscle relationship: develops_from ZFA:0000369 ! intermandibularis relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000034 ! Hatching:Pec-fin [Term] id: ZFA:0007009 name: nerve namespace: zebrafish_anatomy def: "A portion of tissue which is a fasciculated group of axons. Many time axons in the nerve are enveloped by the glial cells of the peripheral nervous system, the Schwann cells." [GOC:ymb, ISBN:0878937420, ORCiD:0000-0002-9900-7880] synonym: "nerves" EXACT PLURAL [] xref: TAO:0007009 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000396 ! nervous system relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0007010 name: thalamic eminence namespace: zebrafish_anatomy def: "Part of the forebrain that is ventral to the ventral thalamus and dorsal to the preoptic area. See page 44 of the Atlas of Early Zebrafish Brain Development." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-070711-1] synonym: "eminentia thalami" EXACT [] xref: TAO:0007010 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000109 ! forebrain relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0007011 name: vagal root namespace: zebrafish_anatomy def: "Part of cranial nerve X." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "rX" EXACT [] synonym: "vagus root" EXACT [] xref: TAO:0007011 is_a: ZFA:0001663 ! cranial nerve root relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000453 ! cranial nerve X relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0007012 name: lateral forebrain bundle namespace: zebrafish_anatomy def: "In the adult bilaterally paired compact tract located lateral to the medial forebrain bundle that extends to the diencephalon. Formed from several fascicles that originate in the precommissural telencephalon and converge rostrocaudally. In the seven day old fish bilaterally paired bundle that runs caudally from the anterior commissure to the forebrain. In the caudal diencephalon the bundle divides into two parts. The thinner part runs more laterally and ventrally, and the thicker part was located more medially and dorsally. Both bundles run in the caudal direction toward the cranial wall of the lateral recess of the diencephalic ventricle, where they apparently exchange some fibers. Then, they continue in the caudal direction, surrounding the lateral recess from the ventral and dorsal side, and meet close to the caudal wall of lateral recess at the level of the commissure of the posterior tuberculum." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-051207-17, ZFIN:ZDB-PUB-961014-1280] synonym: "fasciculus lateralis telencephali" EXACT [ZFIN:ZDB-PUB-961014-1280] synonym: "lateral forebrain bundles" EXACT PLURAL [] xref: TAO:0007012 is_a: ZFA:0001682 ! white matter relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000109 ! forebrain relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0007013 name: preplacodal ectoderm namespace: zebrafish_anatomy def: "Non neural ectoderm that surrounds the presumptive neural plate and gives rise to neurogenic placodes." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "panplacodal ectoderm" EXACT [ZFIN:ZDB-PUB-070122-31] xref: TAO:0007013 is_a: ZFA:0001178 ! non neural ectoderm relationship: end ZFS:0000022 ! Gastrula:Bud relationship: start ZFS:0000020 ! Gastrula:75%-epiboly [Term] id: ZFA:0007014 name: anterior presumptive neural plate namespace: zebrafish_anatomy def: "Rostral portion of embryonic tissue that gives rise to the anterior neural plate." [GOC:mh, GOC:ymb, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-9900-7880] xref: TAO:0007014 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000020 ! Gastrula:75%-epiboly relationship: part_of ZFA:0000063 ! presumptive neural plate relationship: start ZFS:0000019 ! Gastrula:Shield [Term] id: ZFA:0007015 name: posterior presumptive neural plate namespace: zebrafish_anatomy def: "Caudal portion of embryonic tissue that gives rise to the posterior neural plate." [GOC:mh, GOC:ymb, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-9900-7880] xref: TAO:0007015 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000021 ! Gastrula:90%-epiboly relationship: part_of ZFA:0000063 ! presumptive neural plate relationship: start ZFS:0000019 ! Gastrula:Shield [Term] id: ZFA:0007016 name: anterior neural plate namespace: zebrafish_anatomy def: "Rostral portion of the neural plate. Develops into the anterior neural keel." [GOC:mh, GOC:ymb, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-9900-7880] xref: TAO:0007016 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0007014 ! anterior presumptive neural plate relationship: end ZFS:0000022 ! Gastrula:Bud relationship: part_of ZFA:0000132 ! neural plate relationship: start ZFS:0000020 ! Gastrula:75%-epiboly [Term] id: ZFA:0007017 name: posterior neural plate namespace: zebrafish_anatomy def: "Posterior portion of the neural plate that gives rise to the posterior neural keel." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] xref: TAO:0007017 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0007015 ! posterior presumptive neural plate relationship: end ZFS:0000024 ! Segmentation:5-9 somites relationship: part_of ZFA:0000132 ! neural plate relationship: start ZFS:0000021 ! Gastrula:90%-epiboly [Term] id: ZFA:0007018 name: forebrain neural plate namespace: zebrafish_anatomy def: "Anterior portion of anterior neural plate that gives rise to the forebrain neural keel." [GOC:mh, GOC:ymb, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-9900-7880] xref: TAO:0007018 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0000062 ! presumptive forebrain relationship: end ZFS:0000022 ! Gastrula:Bud relationship: part_of ZFA:0007016 ! anterior neural plate relationship: start ZFS:0000021 ! Gastrula:90%-epiboly [Term] id: ZFA:0007019 name: midbrain neural plate namespace: zebrafish_anatomy def: "Portion of neural plate that gives rise to the midbrain neural keel." [GOC:mh, GOC:ymb, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-9900-7880] xref: TAO:0007019 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0000148 ! presumptive midbrain relationship: end ZFS:0000022 ! Gastrula:Bud relationship: part_of ZFA:0007016 ! anterior neural plate relationship: start ZFS:0000021 ! Gastrula:90%-epiboly [Term] id: ZFA:0007020 name: forebrain midbrain boundary neural plate namespace: zebrafish_anatomy def: "Portion of anterior neural plate that gives rise to the forebrain midbrain boundary neural keel." [GOC:mh, GOC:ymb, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-9900-7880] synonym: "diencephalic-mesencephalic boundary neural plate" EXACT [] xref: TAO:0007020 is_a: ZFA:0001689 ! anatomical line relationship: develops_from ZFA:0001368 ! presumptive forebrain midbrain boundary relationship: end ZFS:0000022 ! Gastrula:Bud relationship: part_of ZFA:0007016 ! anterior neural plate relationship: start ZFS:0000021 ! Gastrula:90%-epiboly [Term] id: ZFA:0007021 name: spinal cord neural plate namespace: zebrafish_anatomy def: "Portion of the posterior neural plate that gives rise to the spinal cord neural keel." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] xref: TAO:0007021 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0000417 ! presumptive spinal cord relationship: end ZFS:0000024 ! Segmentation:5-9 somites relationship: part_of ZFA:0007017 ! posterior neural plate relationship: start ZFS:0000021 ! Gastrula:90%-epiboly [Term] id: ZFA:0007022 name: hindbrain neural plate namespace: zebrafish_anatomy def: "Portion of posterior neural plate that gives rise to the hindbrain neural keel." [GOC:mh, GOC:ymb, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-9900-7880] xref: TAO:0007022 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0000569 ! presumptive hindbrain relationship: end ZFS:0000024 ! Segmentation:5-9 somites relationship: part_of ZFA:0007017 ! posterior neural plate relationship: start ZFS:0000021 ! Gastrula:90%-epiboly [Term] id: ZFA:0007023 name: posterior neural keel namespace: zebrafish_anatomy def: "Posterior portion of the neural keel that gives rise to the posterior neural rod." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] xref: TAO:0007023 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0007017 ! posterior neural plate relationship: end ZFS:0000025 ! Segmentation:10-13 somites relationship: part_of ZFA:0000131 ! neural keel relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0007024 name: anterior neural keel namespace: zebrafish_anatomy def: "Rostral portion of the neural keel. Develops into the anterior neural rod." [GOC:mh, GOC:ymb, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-9900-7880] xref: TAO:0007024 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0007016 ! anterior neural plate relationship: end ZFS:0000023 ! Segmentation:1-4 somites relationship: part_of ZFA:0000131 ! neural keel relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0007025 name: midbrain neural keel namespace: zebrafish_anatomy def: "Portion of neural keel that gives rise to the midbrain neural rod." [GOC:mh, GOC:ymb, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-9900-7880] xref: TAO:0007025 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0007019 ! midbrain neural plate relationship: end ZFS:0000023 ! Segmentation:1-4 somites relationship: part_of ZFA:0007024 ! anterior neural keel relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0007026 name: forebrain neural keel namespace: zebrafish_anatomy def: "Anterior portion of anterior neural keel that gives rise to the forebrain neural rod." [GOC:mh, GOC:ymb, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-9900-7880] xref: TAO:0007026 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0007018 ! forebrain neural plate relationship: end ZFS:0000023 ! Segmentation:1-4 somites relationship: part_of ZFA:0007024 ! anterior neural keel relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0007027 name: forebrain midbrain boundary neural keel namespace: zebrafish_anatomy def: "Portion of anterior neural keel that gives rise to the forebrain midbrain boundary neural rod." [GOC:mh, GOC:ymb, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-9900-7880] synonym: "diencephalic-mesencephalic boundary neural keel" EXACT [] xref: TAO:0007027 is_a: ZFA:0001689 ! anatomical line relationship: develops_from ZFA:0007020 ! forebrain midbrain boundary neural plate relationship: end ZFS:0000023 ! Segmentation:1-4 somites relationship: part_of ZFA:0007024 ! anterior neural keel relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0007028 name: spinal cord neural keel namespace: zebrafish_anatomy def: "Portion of the posterior neural keel that gives rise to the spinal cord neural rod." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] xref: TAO:0007028 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000025 ! Segmentation:10-13 somites relationship: part_of ZFA:0007023 ! posterior neural keel relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0007029 name: hindbrain neural keel namespace: zebrafish_anatomy def: "Portion of posterior neural keel that gives rise to the hindbrain neural rod." [GOC:mh, GOC:ymb, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-9900-7880] xref: TAO:0007029 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0007022 ! hindbrain neural plate relationship: end ZFS:0000025 ! Segmentation:10-13 somites relationship: part_of ZFA:0007023 ! posterior neural keel relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0007030 name: posterior neural rod namespace: zebrafish_anatomy def: "Posterior portion of the neural rod that gives rise to the posterior neural tube." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] xref: TAO:0007030 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0007023 ! posterior neural keel relationship: end ZFS:0000026 ! Segmentation:14-19 somites relationship: part_of ZFA:0000133 ! neural rod relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0007031 name: anterior neural rod namespace: zebrafish_anatomy def: "Rostral portion of the neural rod. Develops into the anterior neural tube." [GOC:mh, GOC:ymb, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-9900-7880] xref: TAO:0007031 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0007024 ! anterior neural keel relationship: end ZFS:0000025 ! Segmentation:10-13 somites relationship: part_of ZFA:0000133 ! neural rod relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0007032 name: midbrain neural rod namespace: zebrafish_anatomy def: "Portion of neural rod that gives rise to the midbrain neural tube." [GOC:mh, GOC:ymb, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-9900-7880] xref: TAO:0007032 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0007025 ! midbrain neural keel relationship: end ZFS:0000025 ! Segmentation:10-13 somites relationship: part_of ZFA:0007031 ! anterior neural rod relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0007033 name: forebrain midbrain boundary neural rod namespace: zebrafish_anatomy def: "Portion of anterior neural rod that gives rise to the forebrain midbrain boundary neural tube." [GOC:mh, GOC:ymb, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-9900-7880] synonym: "diencephalic-mesencephalic boundary neural rod" EXACT [] xref: TAO:0007033 is_a: ZFA:0001689 ! anatomical line relationship: develops_from ZFA:0007027 ! forebrain midbrain boundary neural keel relationship: end ZFS:0000025 ! Segmentation:10-13 somites relationship: part_of ZFA:0007031 ! anterior neural rod relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0007034 name: forebrain neural rod namespace: zebrafish_anatomy def: "Anterior portion of anterior neural rod that gives rise to the forebrain neural tube." [GOC:mh, GOC:ymb, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-9900-7880] xref: TAO:0007034 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0007026 ! forebrain neural keel relationship: end ZFS:0000025 ! Segmentation:10-13 somites relationship: part_of ZFA:0007031 ! anterior neural rod relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0007035 name: spinal cord neural rod namespace: zebrafish_anatomy def: "Portion of the posterior neural rod that gives rise to the spinal cord neural tube." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] xref: TAO:0007035 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000026 ! Segmentation:14-19 somites relationship: part_of ZFA:0007030 ! posterior neural rod relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0007036 name: hindbrain neural rod namespace: zebrafish_anatomy def: "Portion of posterior neural rod that gives rise to the hindbrain neural tube." [GOC:mh, GOC:ymb, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-9900-7880] xref: TAO:0007036 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0007029 ! hindbrain neural keel relationship: end ZFS:0000026 ! Segmentation:14-19 somites relationship: part_of ZFA:0007030 ! posterior neural rod relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0007037 name: posterior neural tube namespace: zebrafish_anatomy def: "Posterior portion of the neural tube that gives rise to the hindbrain and spinal cord." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] xref: TAO:0007037 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0007030 ! posterior neural rod relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0001135 ! neural tube relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0007038 name: anterior neural tube namespace: zebrafish_anatomy def: "Rostral portion of the neural tube." [GOC:mh, GOC:ymb, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-9900-7880] xref: TAO:0007038 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0007031 ! anterior neural rod relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0001135 ! neural tube relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0007039 name: midbrain neural tube namespace: zebrafish_anatomy def: "Portion of neural tube that gives rise to the midbrain." [GOC:mh, GOC:ymb, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-9900-7880] xref: TAO:0007039 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0007032 ! midbrain neural rod relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0007038 ! anterior neural tube relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0007040 name: forebrain midbrain boundary neural tube namespace: zebrafish_anatomy def: "Portion of anterior neural tube that gives rise to the forebrain midbrain boundary." [GOC:mh, GOC:ymb, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-9900-7880] synonym: "diencephalic-mesencephalic boundary neural tube" EXACT [] xref: TAO:0007040 is_a: ZFA:0001689 ! anatomical line relationship: develops_from ZFA:0007033 ! forebrain midbrain boundary neural rod relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0007038 ! anterior neural tube relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0007041 name: forebrain neural tube namespace: zebrafish_anatomy def: "Anterior portion of anterior neural rod that gives rise to the forebrain." [GOC:mh, GOC:ymb, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-9900-7880] xref: TAO:0007041 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0007034 ! forebrain neural rod relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0007038 ! anterior neural tube relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0007042 name: spinal cord neural tube namespace: zebrafish_anatomy def: "Portion of the posterior neural tube that gives rise to the spinal cord." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] xref: TAO:0007042 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0007037 ! posterior neural tube relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0007043 name: hindbrain neural tube namespace: zebrafish_anatomy def: "Portion of posterior neural tube that gives rise to the hindbrain." [GOC:mh, GOC:ymb, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-9900-7880] xref: TAO:0007043 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0007036 ! hindbrain neural rod relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0007037 ! posterior neural tube relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0007044 name: midbrain hindbrain boundary neural plate namespace: zebrafish_anatomy def: "Portion of neural plate that gives rise to the midbrain hindbrain boundary neural keel." [GOC:mh, GOC:ymb, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-9900-7880] synonym: "midbrain-hindbrain boundary neural plate" EXACT [] xref: TAO:0007044 is_a: ZFA:0001689 ! anatomical line relationship: develops_from ZFA:0001187 ! presumptive midbrain hindbrain boundary relationship: end ZFS:0000024 ! Segmentation:5-9 somites relationship: part_of ZFA:0000132 ! neural plate relationship: start ZFS:0000021 ! Gastrula:90%-epiboly [Term] id: ZFA:0007045 name: midbrain hindbrain boundary neural keel namespace: zebrafish_anatomy def: "Portion of neural keel that gives rise to the midbrain hindbrain boundary neural rod." [GOC:mh, GOC:ymb, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-9900-7880] synonym: "midbrain-hindbrain boundary neural keel" EXACT [] xref: TAO:0007045 is_a: ZFA:0001689 ! anatomical line relationship: develops_from ZFA:0007044 ! midbrain hindbrain boundary neural plate relationship: end ZFS:0000025 ! Segmentation:10-13 somites relationship: part_of ZFA:0000131 ! neural keel relationship: start ZFS:0000022 ! Gastrula:Bud [Term] id: ZFA:0007046 name: midbrain hindbrain boundary neural rod namespace: zebrafish_anatomy def: "Portion of neural rod that gives rise to the midbrain hindbrain boundary neural tube." [GOC:mh, GOC:ymb, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-9900-7880] synonym: "midbrain-hindbrain boundary neural rod" EXACT [] xref: TAO:0007046 is_a: ZFA:0001689 ! anatomical line relationship: develops_from ZFA:0007045 ! midbrain hindbrain boundary neural keel relationship: end ZFS:0000026 ! Segmentation:14-19 somites relationship: part_of ZFA:0000133 ! neural rod relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0007047 name: midbrain hindbrain boundary neural tube namespace: zebrafish_anatomy def: "Portion of neural tube that gives rise to the midbrain hindbrain boundary." [GOC:mh, GOC:ymb, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-9900-7880] synonym: "midbrain-hindbrain boundary neural tube" EXACT [] xref: TAO:0007047 is_a: ZFA:0001689 ! anatomical line relationship: develops_from ZFA:0007046 ! midbrain hindbrain boundary neural rod relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0001135 ! neural tube relationship: start ZFS:0000026 ! Segmentation:14-19 somites [Term] id: ZFA:0007048 name: ventral intermandibularis posterior namespace: zebrafish_anatomy def: "Is a mandibular muscle that attaches Meckel's cartilage to the basihyal cartilage and functions in jaw opening." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-020703-2, ZFIN:ZDB-PUB-061010-9] synonym: "intermandibularis posterior" EXACT [] synonym: "ventral intermandibulari posterior" EXACT PLURAL [] xref: TAO:0007048 is_a: ZFA:0005145 ! muscle relationship: develops_from ZFA:0000369 ! intermandibularis relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000034 ! Hatching:Pec-fin [Term] id: ZFA:0007049 name: adductor mandibulae namespace: zebrafish_anatomy def: "Is a mandibular muscle that forms along the palatoquadrates and inserts on Meckel's cartilages and functions in jaw closing." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-020703-2, ZFIN:ZDB-PUB-050318-5] synonym: "dorsal adductor mandibulae" EXACT [] xref: TAO:0007049 is_a: ZFA:0000236 ! mandibular muscle relationship: end ZFS:0000041 ! Larval:Days 21-29 relationship: start ZFS:0000032 ! Pharyngula:High-pec [Term] id: ZFA:0007050 name: constrictor dorsalis namespace: zebrafish_anatomy def: "Dorsal subdivision of the putative mandibular muscle plate. Splits into the dilatator operculi and the levator arcus palatini." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-970819-13] synonym: "constrictors dorsalis" EXACT PLURAL [] xref: TAO:0007050 is_a: ZFA:0000236 ! mandibular muscle relationship: end ZFS:0000035 ! Larval:Protruding-mouth relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0007051 name: interhyoideus namespace: zebrafish_anatomy def: "Is a ventral paired hyoid muscle that has attachment sites on the basihyal and the posterior end of the ceratohyals and functions in jaw opening." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-020703-2] synonym: "interhyal" EXACT [] synonym: "ventral interhyoidei" EXACT PLURAL [] synonym: "ventral interhyoideus" EXACT [] xref: TAO:0007051 is_a: ZFA:0000521 ! hyoid muscle relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0007052 name: hyohyoideus namespace: zebrafish_anatomy def: "Is a ventral,paired hyoid muscle that inserts at the most anterior basibranchial and also at the posterior ends of the ceratohyals and functions in jaw closure." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-020703-2] synonym: "hyohyal" EXACT [] xref: TAO:0007052 is_a: ZFA:0000521 ! hyoid muscle relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0007053 name: adductor hyomandibulae namespace: zebrafish_anatomy def: "Is a dorsal, paired hyoid muscle that attaches to the dorsomedial faces of the hyosymplectics." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-020703-2] synonym: "dorsal adductor hyomandibulae" EXACT [] synonym: "dorsal adductors hyomandibulae" EXACT PLURAL [] xref: TAO:0007053 is_a: ZFA:0000521 ! hyoid muscle relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000034 ! Hatching:Pec-fin [Term] id: ZFA:0007054 name: pillar of the anterior semicircular canal namespace: zebrafish_anatomy def: "Pillar of the semicircular canal around whose perimeter runs the anterior semicircular canal." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-383] synonym: "anterior hub of the semicircular canal" EXACT [] synonym: "anterior pillar" EXACT [] synonym: "anterior pillar of the semicircular canal" EXACT [] synonym: "horizontal hub" RELATED [] xref: TAO:0007054 is_a: ZFA:0001717 ! pillar of the semicircular canal relationship: develops_from ZFA:0000232 ! otic vesicle lateral protrusion relationship: develops_from ZFA:0000469 ! otic vesicle anterior protrusion relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000314 ! anterior semicircular canal relationship: start ZFS:0000035 ! Larval:Protruding-mouth [Term] id: ZFA:0007055 name: pillar of the lateral semicircular canal namespace: zebrafish_anatomy def: "Pillar of the semicircular canal around whose perimeter runs the lateral semicircular canal." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-383] synonym: "lateral hub of the semicircular canal" EXACT [] synonym: "ventral bar" EXACT [] synonym: "ventral pillar" EXACT [] synonym: "ventral piller of the semicircular canal" EXACT [] xref: TAO:0007055 is_a: ZFA:0001717 ! pillar of the semicircular canal relationship: develops_from ZFA:0001716 ! otic vesicle ventral protrusion relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000220 ! lateral semicircular canal relationship: start ZFS:0000035 ! Larval:Protruding-mouth [Term] id: ZFA:0007056 name: pillar of the posterior semicircular canal namespace: zebrafish_anatomy def: "Pillar of the semicircular canal around whose perimeter runs the posterior semicircular canal." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-383] synonym: "horizontal hub" RELATED [] synonym: "posterior hub of the semicircular canal" EXACT [] synonym: "posterior pillar" EXACT [] synonym: "posterior pillar of the semicircular" EXACT [] is_a: ZFA:0001717 ! pillar of the semicircular canal relationship: develops_from ZFA:0000232 ! otic vesicle lateral protrusion relationship: develops_from ZFA:0000412 ! otic vesicle posterior protrusion relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000262 ! posterior semicircular canal relationship: start ZFS:0000035 ! Larval:Protruding-mouth [Term] id: ZFA:0007057 name: ocular blood vessel namespace: zebrafish_anatomy def: "Blood vessel within the eye." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "eye vasculature" EXACT [] synonym: "ocular vasculature" RELATED [] synonym: "optic vasculature" EXACT [] xref: TAO:0007057 is_a: ZFA:0005297 ! cranial blood vessel relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0007058 name: roof plate namespace: zebrafish_anatomy def: "Multi-tissue structure that is the dorsal-most aspect of the developing neural tube." [GOC:ymb, ORCiD:0000-0002-9900-7880] xref: TAO:0007058 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: part_of ZFA:0000012 ! central nervous system relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0007059 name: neurogenic field namespace: zebrafish_anatomy def: "Portion of tissue fated to develop into neurogenic placode." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "neurogenic fields" EXACT PLURAL [] xref: TAO:0007059 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0007013 ! preplacodal ectoderm relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: start ZFS:0000021 ! Gastrula:90%-epiboly [Term] id: ZFA:0007060 name: dorsolateral field namespace: zebrafish_anatomy def: "Neurogenic field fated to develop into a dorsolateral placode." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "dorsolateral fields" EXACT PLURAL [] xref: TAO:0007060 is_a: ZFA:0007059 ! neurogenic field relationship: end ZFS:0000022 ! Gastrula:Bud relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0007061 name: epibranchial field namespace: zebrafish_anatomy def: "Neurogenic field fated to develop into an epibranchial placode." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "epibranchial fields" EXACT PLURAL [] xref: TAO:0007061 is_a: ZFA:0007059 ! neurogenic field relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0007062 name: olfactory field namespace: zebrafish_anatomy def: "Neurogenic field fated to develop into the olfactory placode." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "olfactory fields" EXACT PLURAL [] xref: TAO:0007062 is_a: ZFA:0007059 ! neurogenic field relationship: end ZFS:0000025 ! Segmentation:10-13 somites relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0007063 name: neural crest hindbrain namespace: zebrafish_anatomy def: "Cranial neural crest that is part of the hindbrain." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "rhombencephalic neural crest" EXACT [] xref: TAO:0007063 is_a: ZFA:0001194 ! cranial neural crest relationship: end ZFS:0000028 ! Segmentation:26+ somites relationship: start ZFS:0000000 ! Unknown created_by: Yvonne Bradford creation_date: 2009-04-29T04:51:35Z [Term] id: ZFA:0007064 name: mandibular neural crest namespace: zebrafish_anatomy def: "Cranial neural crest that migrates into the mandibular arch." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-061108-6] xref: TAO:0007064 is_a: ZFA:0001194 ! cranial neural crest relationship: end ZFS:0000028 ! Segmentation:26+ somites relationship: part_of ZFA:0007063 ! neural crest hindbrain relationship: start ZFS:0000000 ! Unknown created_by: Yvonne Bradford creation_date: 2009-04-29T04:53:53Z [Term] id: ZFA:0007065 name: hyoid neural crest namespace: zebrafish_anatomy def: "Cranial neural crest that migrates into the hyoid arch." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-061108-6] xref: TAO:0007065 is_a: ZFA:0001194 ! cranial neural crest relationship: end ZFS:0000028 ! Segmentation:26+ somites relationship: part_of ZFA:0007063 ! neural crest hindbrain relationship: start ZFS:0000000 ! Unknown created_by: Yvonne Bradford creation_date: 2009-04-29T04:56:12Z [Term] id: ZFA:0007066 name: glossopharyngeal neural crest namespace: zebrafish_anatomy def: "Cranial neural crest which gives rise to the glossopharyngeal ganglion." [GOC:ymb, ORCiD:0000-0002-9900-7880] xref: TAO:0007066 is_a: ZFA:0001194 ! cranial neural crest relationship: end ZFS:0000028 ! Segmentation:26+ somites relationship: start ZFS:0000000 ! Unknown created_by: Yvonne Bradford creation_date: 2009-11-04T03:39:42Z [Term] id: ZFA:0007067 name: vagal ganglion namespace: zebrafish_anatomy synonym: "gX" EXACT [] xref: TAO:0007067 is_a: ZFA:0001555 ! epibranchial ganglion relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Yvonne Bradford creation_date: 2010-04-21T09:45:38Z [Term] id: ZFA:0007068 name: otic epithelium namespace: zebrafish_anatomy def: "Is an epithelium of the auditory apparatus." [GOC:ymb, ORCiD:0000-0002-9900-7880] is_a: ZFA:0001486 ! epithelium relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Yvonne Bradford creation_date: 2011-04-26T12:34:16Z [Term] id: ZFA:0007069 name: otic squamous epithelium namespace: zebrafish_anatomy def: "Is an otic epithelium composed of cells with a squamous morphology." [GOC:ymb, ISBN:019514502X, ORCiD:0000-0002-9900-7880] is_a: ZFA:0007068 ! otic epithelium relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Yvonne Bradford creation_date: 2011-04-26T12:38:05Z [Term] id: ZFA:0007070 name: otic sensory epithelium namespace: zebrafish_anatomy def: "Is an otic epithelium that is a neuroepithelium which is pseudostratified and senses sound." [GOC:ymb, ORCiD:0000-0002-9900-7880] is_a: ZFA:0007068 ! otic epithelium relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Yvonne Bradford creation_date: 2011-04-26T12:43:35Z [Term] id: ZFA:0007071 name: flexural organ namespace: zebrafish_anatomy def: "Is a portion of tissue that is the most anterior portion of the notochord. The flexural organ secretes Reissner's fiber-related proteins, including F-spondin." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-120709-5] is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000135 ! notochord relationship: start ZFS:0000000 ! Unknown created_by: yvonne creation_date: 2012-07-18T02:12:26Z [Term] id: ZFA:0007072 name: blood sinus namespace: zebrafish_anatomy def: "Is a multitissue structure that accumulates blood." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000010 ! cardiovascular system relationship: start ZFS:0000000 ! Unknown created_by: yvonne creation_date: 2014-10-24T02:12:44Z [Term] id: ZFA:0007073 name: blood sinus cavity namespace: zebrafish_anatomy def: "An enlarged chamber in the blood sinus capable of accumulating a large volume of blood." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "blood sinus lumen" EXACT [] is_a: ZFA:0001643 ! anatomical space relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0007072 ! blood sinus relationship: start ZFS:0000000 ! Unknown created_by: yvonne creation_date: 2014-10-24T02:14:28Z [Term] id: ZFA:0007074 name: maxillary barbel blood sinus namespace: zebrafish_anatomy def: "Is a three-chambered blood sinus found at the base of the maxillary barbel. Responsible, in part, for the movement of the maxillary barbel." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-140816-6] is_a: ZFA:0007072 ! blood sinus relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001267 ! cranial vasculature relationship: start ZFS:0000042 ! Juvenile:Days 30-44 created_by: yvonne creation_date: 2014-10-24T02:18:03Z [Term] id: ZFA:0007075 name: distal bulb of the maxillary blood sinus namespace: zebrafish_anatomy def: "Is a multi-tissue structure forming the smallest chamber of the maxillary barbel blood sinus. It projects into the barbel shaft and has a blood filled lumen, into which extend irregular septa of vascular smooth muscle cells. Additional smooth muscle cells surround the lumen and attach the bulb to the barbel core. Circumferential to the core, there is a thin band of dermal tissue through with run several smaller capillaries and the barbel branch of the of the facial nerve (cranial nerve VII). The entire structure is wrapped by a glandular, stratified epithelium." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-140813-6] is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0007074 ! maxillary barbel blood sinus relationship: start ZFS:0000042 ! Juvenile:Days 30-44 created_by: yvonne creation_date: 2014-10-24T02:22:04Z [Term] id: ZFA:0007076 name: central chamber of the maxillary blood sinus namespace: zebrafish_anatomy def: "Is a multi-tissue structure that is located outside the maxillary barbel proper and is positioned on the lateral surface of the maxilla, medially attached to the lateral surface of the maxillary bone and is laterally is attached to a hemispheric capsule of dense connective tissue of the distal bulb. It connects with the smaller accessory chamber through a slight isthmus. It has a smooth muscle tunic from which extend luminally projecting muscular septa." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-140813-6] is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0007074 ! maxillary barbel blood sinus relationship: start ZFS:0000042 ! Juvenile:Days 30-44 created_by: yvonne creation_date: 2014-10-24T02:27:58Z [Term] id: ZFA:0007077 name: accessory chamber of the maxillary blood sinus namespace: zebrafish_anatomy def: "Is a multi-tissue structure part of the maxillary barbel blood sinus which is connected to the central chamber of the maxillary blood sinus by a slight isthmus. It is not muscularized, has no dense connective tissue capsule and is not attached to adjacent bone. Is composed of dark tunica intima wrapped by thick, light tunica adventitia; cells within the adventitia are widely separated, with extended cytoplasmic veils. External to the adventitia, a branch of the facial nerve and several smaller nerve bundles appear in cross section just lateral to the isthmus. These nerves are in the dermis, but outside the sinus." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-140813-6] is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0007074 ! maxillary barbel blood sinus relationship: start ZFS:0000042 ! Juvenile:Days 30-44 created_by: yvonne creation_date: 2014-10-24T02:34:40Z [Term] id: ZFA:0007078 name: maxillary barbel lymph vessel namespace: zebrafish_anatomy def: "A blind end lymph vessel that emerges from the maxilla, wraps around the sinus isthmus, then runs alongside the distal bulb to enter the barbel shaft proper." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-100121-1, ZFIN:ZDB-PUB-140816-6] synonym: "dorsal maxillary barbel lymph vessel" EXACT [] is_a: ZFA:0005844 ! lymph vessel relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005408 ! maxillary barbel relationship: start ZFS:0000042 ! Juvenile:Days 30-44 created_by: yvonne creation_date: 2014-10-24T02:41:22Z [Term] id: ZFA:0007079 name: maxillary barbel blood vessel namespace: zebrafish_anatomy def: "Blood vessel that emerges from the maxilla, wraps around the sinus isthmus, then runs alongside the distal bulb to enter the barbel shaft proper. There are two ventral vessels that connect distally in the maxillary barbel forming a complete capillary loop." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-100121-1, ZFIN:ZDB-PUB-140816-6] synonym: "ventral maxillary barbel blood vessel" EXACT [] is_a: ZFA:0005314 ! blood vessel relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005408 ! maxillary barbel relationship: start ZFS:0000042 ! Juvenile:Days 30-44 created_by: yvonne creation_date: 2014-10-24T02:46:19Z [Term] id: ZFA:0007080 name: maxillary barbel vasculature namespace: zebrafish_anatomy def: "Is a vasculature that delivers fluid to the maxillary barbel." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-100121-1] is_a: ZFA:0005249 ! vasculature relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005408 ! maxillary barbel relationship: start ZFS:0000042 ! Juvenile:Days 30-44 created_by: yvonne creation_date: 2014-10-24T02:52:05Z [Term] id: ZFA:0007081 name: maxillary barbel proximal plexus namespace: zebrafish_anatomy def: "Is a vascular plexus at the base, or proximal end, of the developing maxillary barbel." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-100121-1, ZFIN:ZDB-PUB-140816-6] is_a: ZFA:0007080 ! maxillary barbel vasculature relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005408 ! maxillary barbel relationship: start ZFS:0000042 ! Juvenile:Days 30-44 created_by: yvonne creation_date: 2014-10-24T02:55:07Z [Term] id: ZFA:0007082 name: neural plate border namespace: zebrafish_anatomy def: "Region of the neural plate that will give rise to the neural crest. The neural plate border includes progenitors for the dorsal neural tube, the neural crest, and placodes. It is a broad competence domain, established between neural and non-neural ectoderm within which subtle and sequential cell autonomous and non-cell autonomous molecular interactions will progressively define the neural crest fate from adjacent dorsal neural fates." [GOC:ymb, ORCiD:0000-0002-9900-7880, PMID:22305800] is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000132 ! neural plate relationship: start ZFS:0000020 ! Gastrula:75%-epiboly created_by: yvonne creation_date: 2016-01-28T08:43:28Z [Term] id: ZFA:0007083 name: premigratory neural crest namespace: zebrafish_anatomy def: "Premigratory neural crest population that develops from the neural plate border. The cells of this group will undergo epithelial to mesenchymal transition and delaminate to produce the migratory neural crest." [GOC:ymb, ORCiD:0000-0002-9900-7880] is_a: ZFA:0000045 ! neural crest relationship: develops_from ZFA:0007082 ! neural plate border relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000023 ! Segmentation:1-4 somites created_by: yvonne creation_date: 2016-01-28T09:06:50Z [Term] id: ZFA:0007084 name: premigratory neural crest cell namespace: zebrafish_anatomy def: "Cell that is part of the premigratory neural crest population. Will undergo epithelial to mesenchymal transition and delamination to become part of the migratory neural crest." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "premigratory neural crest cells" EXACT PLURAL [] xref: CL:0007004 is_a: ZFA:0009165 ! neural crest cell relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0007083 ! premigratory neural crest relationship: start ZFS:0000023 ! Segmentation:1-4 somites created_by: yvonne creation_date: 2016-01-28T09:29:06Z [Term] id: ZFA:0007085 name: migratory neural crest namespace: zebrafish_anatomy def: "Migratory neural crest population that develops from premigratory neural crest. This group of neural crest has undergone ectomesenchymal transition and delamination." [GOC:ymb, ORCiD:0000-0002-9900-7880] is_a: ZFA:0000045 ! neural crest relationship: develops_from ZFA:0007083 ! premigratory neural crest relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000025 ! Segmentation:10-13 somites created_by: yvonne creation_date: 2016-01-28T12:04:14Z [Term] id: ZFA:0007086 name: migratory neural crest cell namespace: zebrafish_anatomy def: "Cell that is part of the migratory neural crest population. Migratory neural crest cells develop from premigratory neural crest cells and have undergone epithelial to mesenchymal transition and delamination." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "migratory neural crest cells" EXACT PLURAL [] xref: CL:0000333 is_a: ZFA:0009136 ! motile cell relationship: develops_from ZFA:0007084 ! premigratory neural crest cell relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0007085 ! migratory neural crest relationship: start ZFS:0000025 ! Segmentation:10-13 somites created_by: yvonne creation_date: 2016-01-28T01:35:09Z [Term] id: ZFA:0007087 name: migratory cranial neural crest namespace: zebrafish_anatomy def: "Migratory cranial neural crest population that develops from premigratory cranial neural crest. This group of neural crest has undergone ectomesenchymal transition and delamination." [GOC:ymb, ORCiD:0000-0002-9900-7880] is_a: ZFA:0001194 ! cranial neural crest is_a: ZFA:0007085 ! migratory neural crest relationship: develops_from ZFA:0007088 ! premigratory cranial neural crest relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: start ZFS:0000025 ! Segmentation:10-13 somites created_by: yvonne creation_date: 2016-03-07T11:45:15Z [Term] id: ZFA:0007088 name: premigratory cranial neural crest namespace: zebrafish_anatomy def: "Premigratory cranial neural crest population that develops from the neural plate border. The cells of this group will undergo epithelial to mesenchymal transition and delaminate to produce the migratory cranial neural crest." [GOC:ymb, ORCiD:0000-0002-9900-7880] is_a: ZFA:0001194 ! cranial neural crest is_a: ZFA:0007083 ! premigratory neural crest relationship: end ZFS:0000024 ! Segmentation:5-9 somites relationship: start ZFS:0000000 ! Unknown created_by: yvonne creation_date: 2016-03-07T03:27:33Z [Term] id: ZFA:0007089 name: embryonic cell namespace: zebrafish_anatomy def: "A cell of the embryo." [CL:curator] xref: CL:0002321 is_a: ZFA:0009000 ! cell relationship: end ZFS:0000034 ! Hatching:Pec-fin relationship: start ZFS:0000001 ! Zygote:1-cell created_by: yvonne creation_date: 2016-03-30T01:24:36Z [Term] id: ZFA:0007090 name: premigratory cranial neural crest cell namespace: zebrafish_anatomy def: "Cell that is part of the premigratory cranial neural crest population. Will undergo epithelial to mesenchymal transition and delamination to become part of the migratory cranial neural crest." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "premigratory cranial neural crest cells" EXACT PLURAL [] is_a: ZFA:0007084 ! premigratory neural crest cell is_a: ZFA:0009003 ! cranial neural crest cell relationship: end ZFS:0000024 ! Segmentation:5-9 somites relationship: part_of ZFA:0007088 ! premigratory cranial neural crest relationship: start ZFS:0000000 ! Unknown created_by: yvonne creation_date: 2016-03-31T12:37:58Z [Term] id: ZFA:0007091 name: migratory cranial neural crest cell namespace: zebrafish_anatomy def: "Cell that is part of the migratory cranial neural crest population. Migratory cranial neural crest cells develop from premigratory cranial neural crest cells and have undergone epithelial to mesenchymal transition and delamination." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "migratory cranial neural crest cells" EXACT PLURAL [] xref: CL:0000008 is_a: ZFA:0007086 ! migratory neural crest cell relationship: develops_from ZFA:0007090 ! premigratory cranial neural crest cell relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0007087 ! migratory cranial neural crest relationship: start ZFS:0000025 ! Segmentation:10-13 somites created_by: yvonne creation_date: 2016-03-31T12:43:55Z [Term] id: ZFA:0007092 name: premigratory trunk neural crest namespace: zebrafish_anatomy def: "Premigratory trunk neural crest population that develops from the neural plate border. The cells of this group will undergo epithelial to mesenchymal transition and delaminate to produce the migratory trunk neural crest." [GOC:ymb, ORCiD:0000-0002-9900-7880] is_a: ZFA:0001024 ! trunk neural crest is_a: ZFA:0007083 ! premigratory neural crest relationship: end ZFS:0000030 ! Pharyngula:Prim-15 relationship: start ZFS:0000000 ! Unknown created_by: yvonne creation_date: 2016-03-31T01:03:25Z [Term] id: ZFA:0007093 name: migratory trunk neural crest namespace: zebrafish_anatomy def: "Migratory trunk neural crest population that develops from premigratory trunk neural crest. This group of neural crest has undergone ectomesenchymal transition and delamination." [GOC:ymb, ORCiD:0000-0002-9900-7880] is_a: ZFA:0001024 ! trunk neural crest is_a: ZFA:0007085 ! migratory neural crest relationship: develops_from ZFA:0007092 ! premigratory trunk neural crest relationship: end ZFS:0000031 ! Pharyngula:Prim-25 relationship: start ZFS:0000000 ! Unknown created_by: yvonne creation_date: 2016-03-31T01:11:09Z [Term] id: ZFA:0007094 name: premigratory trunk neural crest cell namespace: zebrafish_anatomy def: "Cell that is part of the premigratory trunk neural crest population. Will undergo epithelial to mesenchymal transition and delamination to become part of the migratory trunk neural crest." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "premigratory trunk neural crest cells" EXACT PLURAL [] is_a: ZFA:0007084 ! premigratory neural crest cell is_a: ZFA:0009004 ! trunk neural crest cell relationship: end ZFS:0000030 ! Pharyngula:Prim-15 relationship: part_of ZFA:0007092 ! premigratory trunk neural crest relationship: start ZFS:0000000 ! Unknown created_by: yvonne creation_date: 2016-03-31T01:18:04Z [Term] id: ZFA:0007095 name: migratory trunk neural crest cell namespace: zebrafish_anatomy def: "Cell that is part of the migratory trunk neural crest population. Migratory trunk neural crest cells develop from premigratory trunk neural crest cells and have undergone epithelial to mesenchymal transition and delamination." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "migratory trunk neural crest cells" EXACT PLURAL [] xref: CL:0000011 is_a: ZFA:0007086 ! migratory neural crest cell relationship: develops_from ZFA:0007094 ! premigratory trunk neural crest cell relationship: end ZFS:0000031 ! Pharyngula:Prim-25 relationship: part_of ZFA:0007093 ! migratory trunk neural crest relationship: start ZFS:0000000 ! Unknown created_by: yvonne creation_date: 2016-03-31T01:22:09Z [Term] id: ZFA:0007096 name: vertebra 13 namespace: zebrafish_anatomy def: "Vertebra that is posteriorly adjacent to vertebra 12." [GOC:ymb, ORCiD:0000-0002-9900-7880] is_a: ZFA:0001582 ! non-Weberian precaudal vertebra relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: yvonne creation_date: 2016-10-19T14:15:01Z [Term] id: ZFA:0007097 name: vertebra 14 namespace: zebrafish_anatomy def: "Vertebra that is posteriorly adjacent to vertebra 13." [GOC:ymb, ORCiD:0000-0002-9900-7880] is_a: ZFA:0001582 ! non-Weberian precaudal vertebra relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: yvonne creation_date: 2016-10-19T14:22:33Z [Term] id: ZFA:0007098 name: vertebra 15 namespace: zebrafish_anatomy def: "Vertebra that is posteriorly adjacent to vertebra 14." [GOC:ymb, ORCiD:0000-0002-9900-7880] is_a: ZFA:0000326 ! caudal vertebra relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: yvonne creation_date: 2016-10-19T15:10:35Z [Term] id: ZFA:0007099 name: vertebra 16 namespace: zebrafish_anatomy def: "Vertebra that is posteriorly adjacent to vertebra 15." [GOC:ymb, ORCiD:0000-0002-9900-7880] is_a: ZFA:0000326 ! caudal vertebra relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: yvonne creation_date: 2016-10-19T15:15:45Z [Term] id: ZFA:0007100 name: vertebra 17 namespace: zebrafish_anatomy def: "Vertebra that is posteriorly adjacent to vertebra 16." [GOC:ymb, ORCiD:0000-0002-9900-7880] is_a: ZFA:0000326 ! caudal vertebra relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: yvonne creation_date: 2016-10-19T15:17:20Z [Term] id: ZFA:0007101 name: vertebra 18 namespace: zebrafish_anatomy def: "Vertebra that is posteriorly adjacent to vertebra 17." [GOC:ymb, ORCiD:0000-0002-9900-7880] is_a: ZFA:0000326 ! caudal vertebra relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: yvonne creation_date: 2016-10-19T15:19:07Z [Term] id: ZFA:0007102 name: vertebra 19 namespace: zebrafish_anatomy def: "Vertebra that is posteriorly adjacent to vertebra 18." [GOC:ymb, ORCiD:0000-0002-9900-7880] is_a: ZFA:0000326 ! caudal vertebra relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: yvonne creation_date: 2016-10-19T15:20:46Z [Term] id: ZFA:0007103 name: vertebra 20 namespace: zebrafish_anatomy def: "Vertebra that is posteriorly adjacent to vertebra 19." [GOC:ymb, ORCiD:0000-0002-9900-7880] is_a: ZFA:0000326 ! caudal vertebra relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: yvonne creation_date: 2016-10-19T15:22:42Z [Term] id: ZFA:0007104 name: vertebra 21 namespace: zebrafish_anatomy def: "Vertebra that is posteriorly adjacent to vertebra 20." [GOC:ymb, ORCiD:0000-0002-9900-7880] is_a: ZFA:0000326 ! caudal vertebra relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: yvonne creation_date: 2016-10-19T15:24:43Z [Term] id: ZFA:0007105 name: vertebra 22 namespace: zebrafish_anatomy def: "Vertebra that is posteriorly adjacent to vertebra 21." [GOC:ymb, ORCiD:0000-0002-9900-7880] is_a: ZFA:0000326 ! caudal vertebra relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: yvonne creation_date: 2016-10-19T15:26:15Z [Term] id: ZFA:0007106 name: vertebra 23 namespace: zebrafish_anatomy def: "Vertebra that is posteriorly adjacent to vertebra 22." [GOC:ymb, ORCiD:0000-0002-9900-7880] is_a: ZFA:0000326 ! caudal vertebra relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: yvonne creation_date: 2016-10-19T15:29:09Z [Term] id: ZFA:0007107 name: vertebra 24 namespace: zebrafish_anatomy def: "Vertebra that is posteriorly adjacent to vertebra 23." [GOC:ymb, ORCiD:0000-0002-9900-7880] is_a: ZFA:0000326 ! caudal vertebra relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: yvonne creation_date: 2016-10-19T15:31:04Z [Term] id: ZFA:0007108 name: vertebra 25 namespace: zebrafish_anatomy def: "Vertebra that is posteriorly adjacent to vertebra 24." [GOC:ymb, ORCiD:0000-0002-9900-7880] is_a: ZFA:0000326 ! caudal vertebra relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: yvonne creation_date: 2016-10-19T15:32:40Z [Term] id: ZFA:0007109 name: vertebra 26 namespace: zebrafish_anatomy def: "Vertebra that is posteriorly adjacent to vertebra 25." [GOC:ymb, ORCiD:0000-0002-9900-7880] is_a: ZFA:0000326 ! caudal vertebra relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: yvonne creation_date: 2016-10-19T15:34:15Z [Term] id: ZFA:0007110 name: vertebra 27 namespace: zebrafish_anatomy def: "Vertebra that is posteriorly adjacent to vertebra 26." [GOC:ymb, ORCiD:0000-0002-9900-7880] is_a: ZFA:0000326 ! caudal vertebra relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: yvonne creation_date: 2016-10-19T15:36:10Z [Term] id: ZFA:0007111 name: vertebra 28 namespace: zebrafish_anatomy def: "Vertebra that is posteriorly adjacent to vertebra 27." [GOC:ymb, ORCiD:0000-0002-9900-7880] is_a: ZFA:0000326 ! caudal vertebra relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: yvonne creation_date: 2016-10-19T15:37:40Z [Term] id: ZFA:0007112 name: vertebra 29 namespace: zebrafish_anatomy def: "Vertebra that is posteriorly adjacent to vertebra 28." [GOC:ymb, ORCiD:0000-0002-9900-7880] is_a: ZFA:0000326 ! caudal vertebra relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: yvonne creation_date: 2016-10-19T15:39:17Z [Term] id: ZFA:0007113 name: vertebra 30 namespace: zebrafish_anatomy def: "Vertebra that is posteriorly adjacent to vertebra 29." [GOC:ymb, ORCiD:0000-0002-9900-7880] is_a: ZFA:0000326 ! caudal vertebra relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: yvonne creation_date: 2016-10-19T15:41:01Z [Term] id: ZFA:0007114 name: anatomical conduit namespace: zebrafish_anatomy def: "An anatomical structure that is an opening or tube that connects two distinct anatomical spaces." [GOC:ymb, ORCid:0000-0002-9900-7880] is_a: ZFA:0000037 ! anatomical structure relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Yvonne creation_date: 2018-03-23T11:46:06Z [Term] id: ZFA:0007115 name: pericardial region namespace: zebrafish_anatomy def: "An anatomical cluster composed of the heart and associated structures." [GOC:ymb, ORCid:0000-0002-9900-7880] is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Yvonne creation_date: 2018-03-26T11:52:32Z [Term] id: ZFA:0007116 name: pleuroperitoneal region namespace: zebrafish_anatomy def: "An anatomical cluster composed of the organs of the pleuroperitoneal cavity and associated structures." [GOC:ymb, ORCid:0000-0002-9900-7880] is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Yvonne creation_date: 2018-03-26T14:19:43Z [Term] id: ZFA:0007117 name: Meckel's cartilage-palatoquadrate cartilage joint namespace: zebrafish_anatomy def: "Joint between Meckel's cartilage and palatoquadrate cartilage." [GOC:ymb, ORCid:0000-0002-9900-7880, ZFIN:ZDB-PUB-151122-6] synonym: "jaw joint" EXACT [] is_a: ZFA:0001596 ! joint relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000033 ! Hatching:Long-pec created_by: Yvonne creation_date: 2019-04-05T15:06:57Z [Term] id: ZFA:0007118 name: vertebral body end plate namespace: zebrafish_anatomy def: "The vertebral body end plate is part of the autocentrum. The anterior and posterior surfaces of the autocentrum constitute the funnel shaped vertebral body end plates. The outer rim of the end plate is the vertebral body growth zone. The anterior and posterior end plates are connected by bony plates that are horizontally attached to the ourter contour of the autocentrum." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-180228-2] synonym: "vertebral body endplate" EXACT [] is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000126 ! centrum relationship: start ZFS:0000035 ! Larval:Protruding-mouth created_by: Yvonne creation_date: 2019-04-08T12:21:06Z [Term] id: ZFA:0007119 name: intervertebral ligament namespace: zebrafish_anatomy def: "Ligament that connects adjacent vertebra. The intervertebral ligament (IVL) connects the posterior vertebral end plate to the anterior vertebral end plate of adjacent vertebra. For example the IVL connects the posterior end plate of vertebra 14 to the anterior end plate of vertebra 15. It is typically composed of three distinct layers: the notochord sheet which is mainly type II collagen; the outer elastin layer; and a layer of type I collagen fiber bundles." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-180808-7] synonym: "IVL" EXACT [] is_a: ZFA:0001675 ! ligament relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001559 ! vertebral column relationship: start ZFS:0000035 ! Larval:Protruding-mouth created_by: Yvonne creation_date: 2019-04-08T13:27:22Z [Term] id: ZFA:0009000 name: cell namespace: zebrafish_anatomy def: "Anatomical structure that has as its parts a maximally connected cell compartment surrounded by a plasma membrane." [CARO:MAH, ORCiD:0000-0001-9114-8737] subset: cell_slim synonym: "cells" EXACT PLURAL [] xref: CARO:0000013 xref: CL:0000000 xref: TAO:0009000 is_a: ZFA:0000037 ! anatomical structure relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001094 ! whole organism relationship: start ZFS:0000001 ! Zygote:1-cell [Term] id: ZFA:0009001 name: receptor cell (sensu Animalia) namespace: zebrafish_anatomy subset: cell_slim synonym: "receptor cells (sensu Animalia)" EXACT PLURAL [] xref: CL:0000006 xref: TAO:0009001 is_a: ZFA:0009248 ! neuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009002 name: early embryonic cell namespace: zebrafish_anatomy def: "An embryonic cell that is formed before the germ layers have been formed." [CL:curator] subset: cell_slim synonym: "early embryonic cells" EXACT PLURAL [] xref: CL:0000007 xref: TAO:0009002 is_a: ZFA:0007089 ! embryonic cell relationship: end ZFS:0000022 ! Gastrula:Bud relationship: start ZFS:0000001 ! Zygote:1-cell [Term] id: ZFA:0009003 name: cranial neural crest cell namespace: zebrafish_anatomy def: "A cell of the cranial neural crest." [GOC:ymb, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "cranial neural crest cells" EXACT PLURAL [] is_a: ZFA:0009165 ! neural crest cell relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0001194 ! cranial neural crest relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009004 name: trunk neural crest cell namespace: zebrafish_anatomy def: "A cell of the trunk neural crest." [GOC:ymb, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "trunk neural crest cells" EXACT PLURAL [] is_a: ZFA:0009165 ! neural crest cell relationship: end ZFS:0000031 ! Pharyngula:Prim-25 relationship: part_of ZFA:0001024 ! trunk neural crest relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009005 name: spermatocyte namespace: zebrafish_anatomy def: "A male germ cell that develops from spermatogonia. The euploid primary spermatocytes undergo meiosis and give rise to the haploid secondary spermatocytes which in turn give rise to spermatids." [CL:curator] subset: cell_slim synonym: "spermatocytes" EXACT PLURAL [] xref: CL:0000017 xref: TAO:0009005 is_a: ZFA:0009016 ! germ line cell relationship: develops_from ZFA:0009007 ! spermatogonium relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000598 ! testis relationship: start ZFS:0000043 ! Juvenile:Days 45-89 [Term] id: ZFA:0009006 name: sperm namespace: zebrafish_anatomy def: "A mature male germ cell that develops from a spermatid." [CL:curator] subset: cell_slim synonym: "sperm cell" EXACT [] synonym: "spermatozoid" EXACT [] synonym: "spermatozoon" EXACT [] xref: CL:0000019 xref: TAO:0009006 is_a: ZFA:0009016 ! germ line cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009007 name: spermatogonium namespace: zebrafish_anatomy alt_id: ZFA:0001337 def: "An euploid male germ cell of an early stage of spermatogenesis." [CL:curator] subset: cell_slim synonym: "spermatogonia" EXACT PLURAL [] xref: CL:0000020 xref: TAO:0001337 xref: TAO:0009007 is_a: ZFA:0009016 ! germ line cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005882 ! spermatogenic cyst relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009009 name: neuron neural crest derived namespace: zebrafish_anatomy subset: cell_slim xref: CL:0000029 xref: TAO:0009009 is_a: ZFA:0009000 ! cell relationship: develops_from ZFA:0009165 ! neural crest cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009010 name: glioblast namespace: zebrafish_anatomy subset: cell_slim synonym: "glioblasts" EXACT PLURAL [] xref: CL:0000030 xref: TAO:0009010 is_a: ZFA:0009000 ! cell relationship: develops_from ZFA:0001120 ! neuroectoderm relationship: develops_from ZFA:0009080 ! neurectodermal cell relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0009011 name: neuroblast namespace: zebrafish_anatomy subset: cell_slim synonym: "neuroblasts" EXACT PLURAL [] xref: CL:0000031 xref: TAO:0009011 is_a: ZFA:0009019 ! neuronal stem cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009012 name: neuroplacodal cell namespace: zebrafish_anatomy subset: cell_slim synonym: "neuroplacodal cells" EXACT PLURAL [] xref: CL:0000032 xref: TAO:0009012 is_a: ZFA:0009000 ! cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009013 name: single fate stem cell namespace: zebrafish_anatomy subset: cell_slim synonym: "single fate stem cells" EXACT PLURAL [] xref: CL:0000035 xref: TAO:0009013 is_a: ZFA:0009307 ! somatic stem cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009014 name: hematopoietic stem cell namespace: zebrafish_anatomy def: "A stem cell from which all cells of the lymphoid and myeloid lineages develop, including blood cells and cells of the immune system." [CL:curator] subset: cell_slim synonym: "colony forming unit hematopoietic" RELATED [] synonym: "hematopoietic progenitor cell" RELATED [] synonym: "hemopoietic progenitor cell" RELATED [] synonym: "hemopoietic stem cell" EXACT [] synonym: "HSC" EXACT [] xref: CL:0000037 xref: TAO:0009014 is_a: ZFA:0009020 ! multi fate stem cell relationship: develops_from ZFA:0009258 ! angioblastic mesenchymal cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005023 ! hematopoietic system relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0009015 name: erythroid progenitor cell namespace: zebrafish_anatomy def: "A progenitor cell committed to the erythroid lineage." [ZFIN:ZDB-PUB-070221-1] subset: cell_slim synonym: "BFU-E" RELATED [] synonym: "blast forming unit erythroid" RELATED [] synonym: "burst forming unit erythroid" RELATED [] synonym: "CFU-E" RELATED [] synonym: "colony forming unit erythroid" RELATED [] synonym: "erythroid stem cell" RELATED [] xref: CL:0000038 xref: TAO:0009015 is_a: ZFA:0009356 ! myeloid lineage restricted progenitor cell relationship: develops_from ZFA:0009022 ! megakaryocyte erythroid progenitor cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009016 name: germ line cell namespace: zebrafish_anatomy def: "A cell that is within the developmental lineage of gametes and is able to pass along its genetic material to offspring." [GOC:tfm] subset: cell_slim synonym: "germ line cells" EXACT PLURAL [] xref: CL:0000039 xref: TAO:0009016 is_a: ZFA:0009000 ! cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009017 name: monoblast namespace: zebrafish_anatomy def: "A myeloid progenitor cell committed to the monocyte lineage." [CL:curator, http://www.copewithcytokines.de] subset: cell_slim synonym: "CFU-M" EXACT [] synonym: "colony forming unit macrophage" EXACT [] synonym: "monocyte stem cell" EXACT [] xref: CL:0000040 xref: TAO:0009017 is_a: ZFA:0009356 ! myeloid lineage restricted progenitor cell relationship: develops_from ZFA:0009251 ! granulocyte monocyte progenitor cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009018 name: neutrophilic myeloblast namespace: zebrafish_anatomy def: "A myeloblast committed to the neutrophil lineage. A myeloblast is the most primitive precursor in the granulocytic series, having fine, evenly distributed chromatin, several nucleoli, and a nongranular basophilic cytoplasm." [ZFIN:ZDB-PUB-070221-1] subset: cell_slim synonym: "neutrophilic granuloblast" RELATED [] xref: CL:0000042 xref: TAO:0009018 is_a: ZFA:0009353 ! myeloblast relationship: develops_from ZFA:0009352 ! neutrophil progenitor cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009019 name: neuronal stem cell namespace: zebrafish_anatomy subset: cell_slim synonym: "neuronal stem cells" EXACT PLURAL [] xref: CL:0000047 xref: TAO:0009019 is_a: ZFA:0009020 ! multi fate stem cell relationship: develops_from ZFA:0009080 ! neurectodermal cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009020 name: multi fate stem cell namespace: zebrafish_anatomy def: "A stem cell that can give rise to mulitple lineages of cells." [CL:curator] subset: cell_slim synonym: "multipotent stem cell" EXACT [] xref: CL:0000048 xref: TAO:0009020 is_a: ZFA:0009307 ! somatic stem cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009021 name: common myeloid progenitor namespace: zebrafish_anatomy def: "A progenitor cell committed to myeloid lineage, including the megakaryocyte and erythroid lineages." [ZFIN:ZDB-PUB-070221-2] subset: cell_slim synonym: "CMP" EXACT [ZFIN:ZDB-PUB-070221-2] synonym: "colony forming unit granulocyte, erythrocyte, macrophage, and megakaryocyte" RELATED [ZFIN:ZDB-PUB-070221-2] synonym: "multipotential myeloid stem cell" RELATED [ZFIN:ZDB-PUB-070221-2] synonym: "myeloid stem cell" RELATED [ZFIN:ZDB-PUB-070221-2] synonym: "pluripotent stem cell (bone marrow)" RELATED [ZFIN:ZDB-PUB-070221-2] xref: CL:0000049 xref: TAO:0009021 is_a: ZFA:0005830 ! hematopoietic cell relationship: develops_from ZFA:0009014 ! hematopoietic stem cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009022 name: megakaryocyte erythroid progenitor cell namespace: zebrafish_anatomy def: "A progenitor cell committed to the megakaryocyte and erythroid lineages." [CL:curator] subset: cell_slim synonym: "colony forming unit erythroid megakaryocyte" EXACT [] synonym: "MEP" EXACT [] xref: CL:0000050 xref: TAO:0009022 is_a: ZFA:0005830 ! hematopoietic cell relationship: develops_from ZFA:0009021 ! common myeloid progenitor relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009023 name: common lymphoid progenitor namespace: zebrafish_anatomy def: "An oligopotent progenitor cell committed to the lymphoid lineage." [CL:curator] subset: cell_slim synonym: "CLP" EXACT [] synonym: "committed lymphopoietic stem cell" RELATED [] synonym: "early lymphocyte progenitor" RELATED [] synonym: "ELP" RELATED [] synonym: "lymphoid stem cell" RELATED [] synonym: "lymphopoietic stem cell" RELATED [] xref: CL:0000051 xref: TAO:0009023 is_a: ZFA:0005830 ! hematopoietic cell relationship: develops_from ZFA:0009014 ! hematopoietic stem cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0009024 name: totipotent stem cell namespace: zebrafish_anatomy def: "A stem cell from which all cells of the body can form." [CL:curator] subset: cell_slim synonym: "totipotent stem cells" EXACT PLURAL [] xref: CL:0000052 xref: TAO:0009024 is_a: ZFA:0009307 ! somatic stem cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009025 name: myoblast namespace: zebrafish_anatomy def: "An embryonic (precursor) cell of the myogenic lineage that develops from the mesoderm. They undergo proliferation, migrate to their various sites, and then differentiate into the appropriate form of myocytes." [CL:curator] subset: cell_slim synonym: "myoblasts" EXACT PLURAL [] xref: CL:0000056 xref: TAO:0009025 is_a: ZFA:0009000 ! cell relationship: develops_from ZFA:0009179 ! muscle stem cell relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0009026 name: fibroblast namespace: zebrafish_anatomy def: "A connective tissue cell which secretes an extracellular matrix rich in collagen and other macromolecules." [CL:curator] comment: Not in CL. subset: cell_slim synonym: "fibroblasts" EXACT PLURAL [] xref: CL:0000057 xref: TAO:0009026 is_a: ZFA:0009000 ! cell relationship: develops_from ZFA:0009081 ! mesenchymal cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009027 name: chondroblast namespace: zebrafish_anatomy def: "Skeletogenic cell that is typically non-terminally differentiated, secretes an avascular, GAG rich matrix; is not buried in cartilage tissue matrix, retains the ability to divide, located adjacent to cartilage tissue (including within the perichondrium)." [GOC:tfm] subset: cell_slim synonym: "chondroblasts" EXACT PLURAL [] xref: CL:0000058 xref: TAO:0009027 is_a: ZFA:0009000 ! cell relationship: develops_from ZFA:0000041 ! mesoderm relationship: develops_from ZFA:0009081 ! mesenchymal cell relationship: develops_from ZFA:0009138 ! mesodermal cell relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0001501 ! cartilage element relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0009028 name: ameloblast namespace: zebrafish_anatomy def: "A cylindrical epithelial cell in the innermost layer of the enamel organ. Their functions include contribution to the development of the dentinoenamel junction by the deposition of a layer of the matrix, thus producing the foundation for the prisms (the structural units of the dental enamel), and production of the matrix for the enamel prisms and interprismatic substance. (From Jablonski's Dictionary of Dentistry, 1992)." [CL:curator] subset: cell_slim synonym: "ameloblasts" EXACT PLURAL [] xref: CL:0000059 xref: TAO:0009028 is_a: ZFA:0009000 ! cell relationship: develops_from ZFA:0005134 ! dental epithelium relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009029 name: odontoblast namespace: zebrafish_anatomy def: "Skeletogenic cell that secretes dentine matrix, is derived from the tooth pulp." [GOC:cvs] subset: cell_slim synonym: "odontoblasts" EXACT PLURAL [] xref: CL:0000060 xref: TAO:0009029 is_a: ZFA:0009000 ! cell relationship: develops_from ZFA:0009003 ! cranial neural crest cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005141 ! tooth pulp relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009030 name: cementoblast namespace: zebrafish_anatomy def: "A cell of ectomesenchymal origin concerned with the formation of the layer of cementum on the roots of teeth." [ISBN:0781733901] subset: cell_slim synonym: "cementoblasts" EXACT PLURAL [] xref: CL:0000061 xref: TAO:0009030 is_a: ZFA:0009000 ! cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005138 ! dental organ relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009031 name: osteoblast namespace: zebrafish_anatomy def: "A bone-forming cell which secretes an extracellular matrix. Hydroxyapatite crystals are then deposited into the matrix to form bone." [CL:curator] subset: cell_slim synonym: "osteoblasts" EXACT PLURAL [] xref: CL:0000062 xref: TAO:0009031 is_a: ZFA:0009000 ! cell relationship: develops_from ZFA:0009003 ! cranial neural crest cell relationship: develops_from ZFA:0009184 ! osteoprogenitor cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009032 name: ciliated cell namespace: zebrafish_anatomy subset: cell_slim synonym: "ciliated cells" EXACT PLURAL [] xref: CL:0000064 xref: TAO:0009032 is_a: ZFA:0009000 ! cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009033 name: ependymal cell namespace: zebrafish_anatomy def: "A neurectoderm derived cell that lines the neural lumen." [CL:curator] subset: cell_slim synonym: "ependymocyte" EXACT [] xref: CL:0000065 xref: TAO:0009033 is_a: ZFA:0009035 ! ciliated epithelial cell relationship: develops_from ZFA:0009306 ! neuroepithelial cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000396 ! nervous system relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009034 name: epithelial cell namespace: zebrafish_anatomy def: "A cell that is usually found in a two-dimensional sheet with a free surface." [CL:curator] subset: cell_slim synonym: "epithelial cells" EXACT PLURAL [] xref: CL:0000066 xref: TAO:0009034 is_a: ZFA:0009000 ! cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001486 ! epithelium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009035 name: ciliated epithelial cell namespace: zebrafish_anatomy subset: cell_slim synonym: "ciliated epithelial cells" EXACT PLURAL [] xref: CL:0000067 xref: TAO:0009035 is_a: ZFA:0009032 ! ciliated cell is_a: ZFA:0009038 ! columnar/cuboidal epithelial cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009036 name: blood vessel endothelial cell namespace: zebrafish_anatomy subset: cell_slim synonym: "blood vessel endothelial cells" EXACT PLURAL [] xref: CL:0000071 xref: TAO:0009036 is_a: ZFA:0009039 ! squamous epithelial cell is_a: ZFA:0009065 ! endothelial cell relationship: develops_from ZFA:0000041 ! mesoderm relationship: develops_from ZFA:0005773 ! embryonic blood vessel endothelial progenitor cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005257 ! blood vessel endothelium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009037 name: barrier epithelial cell namespace: zebrafish_anatomy subset: cell_slim synonym: "barrier epithelial cells" EXACT PLURAL [] xref: CL:0000073 xref: TAO:0009037 is_a: ZFA:0009000 ! cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009038 name: columnar/cuboidal epithelial cell namespace: zebrafish_anatomy subset: cell_slim synonym: "columnar/cuboidal epithelial cells" EXACT PLURAL [] xref: CL:0000075 xref: TAO:0009038 is_a: ZFA:0009034 ! epithelial cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009039 name: squamous epithelial cell namespace: zebrafish_anatomy subset: cell_slim synonym: "squamous epithelial cells" EXACT PLURAL [] xref: CL:0000076 xref: TAO:0009039 is_a: ZFA:0009034 ! epithelial cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009040 name: mesothelial cell namespace: zebrafish_anatomy subset: cell_slim synonym: "mesothelial cells" EXACT PLURAL [] xref: CL:0000077 xref: TAO:0009040 is_a: ZFA:0009039 ! squamous epithelial cell is_a: ZFA:0009130 ! lining cell relationship: develops_from ZFA:0009138 ! mesodermal cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009041 name: peridermal cell namespace: zebrafish_anatomy subset: cell_slim synonym: "peridermal cells" EXACT PLURAL [] xref: CL:0000078 xref: TAO:0009041 is_a: ZFA:0009039 ! squamous epithelial cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009042 name: stratified epithelial cell namespace: zebrafish_anatomy subset: cell_slim synonym: "stratified epithelial cells" EXACT PLURAL [] xref: CL:0000079 xref: TAO:0009042 is_a: ZFA:0009034 ! epithelial cell relationship: develops_from ZFA:0009180 ! stratified epithelial stem cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009043 name: circulating cell namespace: zebrafish_anatomy def: "A cell which moves among different tissues of the body, via blood, lymph, or other medium." [CL:curator] subset: cell_slim synonym: "circulating cells" EXACT PLURAL [] xref: CL:0000080 xref: TAO:0009043 is_a: ZFA:0009000 ! cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009044 name: blood cell namespace: zebrafish_anatomy def: "A cell found predominately in the blood." [CL:curator] subset: cell_slim synonym: "blood cells" EXACT PLURAL [] xref: CL:0000081 xref: TAO:0009044 is_a: ZFA:0005830 ! hematopoietic cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000007 ! blood relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0009045 name: epithelial cell of pancreas namespace: zebrafish_anatomy subset: cell_slim synonym: "epithelial cells of pancreas" EXACT PLURAL [] xref: CL:0000083 xref: TAO:0009045 is_a: ZFA:0009034 ! epithelial cell relationship: develops_from ZFA:0009139 ! endodermal cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009046 name: T cell namespace: zebrafish_anatomy alt_id: ZFA:0009340 alt_id: ZFA:0009341 def: "A type of lymphocyte whose defining characteristic is the expression of a T cell receptor complex." [ZFIN:ZDB-PUB-070221-3] comment: CL:0000804 and CL:0000812 were merged in the cell ontology into CL:0000084. subset: cell_slim synonym: "immature T cell" EXACT [] synonym: "immature T lymphocyte" EXACT [] synonym: "immature T-cell" EXACT [] synonym: "immature T-lymphocyte" EXACT [] synonym: "mature T cell" EXACT [] synonym: "mature T lymphocyte" EXACT [] synonym: "mature T-cell" EXACT [] synonym: "mature T-lymphocyte" EXACT [] synonym: "T lymphocyte" EXACT [] synonym: "T-cell" EXACT [] synonym: "T-lymphocyte" EXACT [] xref: CL:0000084 xref: TAO:0009046 xref: TAO:0009340 xref: TAO:0009341 is_a: ZFA:0009250 ! lymphocyte relationship: develops_from ZFA:0009350 ! pro-T cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009047 name: osteoclast namespace: zebrafish_anatomy def: "A specialized phagocytic cell associated with the absorption and removal of the mineralized matrix of bone tissue, which typically differentiates from monocytes." [CL:curator, ZFIN:ZDB-PUB-070221-3] comment: Morphology: Highly vesicular; markers: Surface: RANK, cFMS (MCSF receptor); Secreted: cathepsin K and TRAP (tartate resistant acid phosphatase); transcription factors: PU.1, cFOS, MITF, NFkB (p52); role or process: tissue remodelling: bone resorption; lineage: hematopoietic, myeloid. subset: cell_slim synonym: "chondroclast" RELATED [] xref: CL:0000092 xref: TAO:0009047 is_a: ZFA:0009000 ! cell relationship: develops_from ZFA:0009265 ! monocyte relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009048 name: granulocyte namespace: zebrafish_anatomy def: "A leukocyte with abundant granules in the cytoplasm." [CL:curator] subset: cell_slim synonym: "granulocytes" EXACT PLURAL [] xref: CL:0000094 xref: TAO:0009048 is_a: ZFA:0009326 ! myeloid leukocyte relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009049 name: mature neutrophil namespace: zebrafish_anatomy def: "A fully differentiated neutrophil, a granular leukocyte having a nucleus with three to five lobes connected by slender threads of chromatin, and cytoplasm containing fine inconspicuous granules and stainable by neutral dyes." [CL:curator] subset: cell_slim synonym: "mature neutrocyte" EXACT [] synonym: "mature neutrophil leucocyte" EXACT [] synonym: "mature neutrophil leukocyte" EXACT [] synonym: "mature neutrophilic leucocyte" EXACT [] synonym: "mature neutrophilic leukocyte" EXACT [] synonym: "PMN" EXACT [] synonym: "poly" RELATED [] synonym: "polymorphonuclear leucocyte" RELATED [] synonym: "polymorphonuclear leukocyte" RELATED [] synonym: "polymorphonuclear neutrophil" EXACT [] synonym: "polynuclear neutrophilic leucocyte" EXACT [] synonym: "polynuclear neutrophilic leukocyte" EXACT [] xref: CL:0000096 xref: TAO:0009049 is_a: ZFA:0009327 ! neutrophil relationship: develops_from ZFA:0009254 ! band form neutrophil relationship: develops_from ZFA:0009328 ! immature neutrophil relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009050 name: sensory epithelial cell namespace: zebrafish_anatomy subset: cell_slim synonym: "sensory epithelial cells" EXACT PLURAL [] xref: CL:0000098 xref: TAO:0009050 is_a: ZFA:0009038 ! columnar/cuboidal epithelial cell relationship: develops_from ZFA:0009306 ! neuroepithelial cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009051 name: interneuron namespace: zebrafish_anatomy def: "Most generally any neuron which is not motor or sensory. Interneurons may also refer to neurons whose axons remain within a particular brain region as contrasted with projection neurons which have axons projecting to other brain regions." [CL:curator] subset: cell_slim synonym: "interneurons" EXACT PLURAL [] xref: CL:0000099 xref: TAO:0009051 is_a: ZFA:0009248 ! neuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009052 name: motor neuron namespace: zebrafish_anatomy def: "An efferent neuron that passes from the central nervous system or a ganglion toward or to a muscle and conducts an impulse that causes movement." [CL:curator] subset: cell_slim synonym: "motoneuron" EXACT [] xref: CL:0000100 xref: TAO:0009052 is_a: ZFA:0009239 ! efferent neuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009053 name: sensory neuron namespace: zebrafish_anatomy alt_id: ZFA:0000432 subset: cell_slim xref: CL:0000101 xref: TAO:0009053 is_a: ZFA:0009238 ! afferent neuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0009054 name: polymodal neuron namespace: zebrafish_anatomy subset: cell_slim synonym: "polymodal neurons" EXACT PLURAL [] xref: CL:0000102 xref: TAO:0009054 is_a: ZFA:0009248 ! neuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009055 name: bipolar neuron namespace: zebrafish_anatomy def: "A type of interneuron that has two neurites, usually an axon and a dendrite, extending from opposite poles of an ovoid cell body." [ZFIN:ZDB-PUB-070221-4] subset: cell_slim synonym: "bipolar neurons" EXACT PLURAL [] xref: CL:0000103 xref: TAO:0009055 is_a: ZFA:0009051 ! interneuron relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000119 ! retinal inner nuclear layer relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009056 name: multipolar neuron namespace: zebrafish_anatomy subset: cell_slim synonym: "multipolar neurons" EXACT PLURAL [] xref: CL:0000104 xref: TAO:0009056 is_a: ZFA:0009248 ! neuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009057 name: pseudounipolar neuron namespace: zebrafish_anatomy subset: cell_slim synonym: "pseudounipolar neurons" EXACT PLURAL [] xref: CL:0000105 xref: TAO:0009057 is_a: ZFA:0009248 ! neuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009058 name: unipolar neuron namespace: zebrafish_anatomy subset: cell_slim synonym: "unipolar neurons" EXACT PLURAL [] xref: CL:0000106 xref: TAO:0009058 is_a: ZFA:0009248 ! neuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009059 name: autonomic neuron namespace: zebrafish_anatomy subset: cell_slim synonym: "autonomic neurons" EXACT PLURAL [] xref: CL:0000107 xref: TAO:0009059 is_a: ZFA:0009009 ! neuron neural crest derived is_a: ZFA:0009248 ! neuron relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001574 ! autonomic nervous system relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009060 name: cholinergic neuron namespace: zebrafish_anatomy def: "A neuron that uses acetylcholine as a vesicular neurotransmitter." [GOC:tfm] subset: cell_slim synonym: "cholinergic neurons" EXACT PLURAL [] xref: CL:0000108 xref: TAO:0009060 is_a: ZFA:0009248 ! neuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009061 name: adrenergic neuron namespace: zebrafish_anatomy subset: cell_slim synonym: "adrenergic neurons" EXACT PLURAL [] xref: CL:0000109 xref: TAO:0009061 is_a: ZFA:0009248 ! neuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009062 name: peptidergic neuron namespace: zebrafish_anatomy subset: cell_slim synonym: "peptidergic neurons" EXACT PLURAL [] xref: CL:0000110 xref: TAO:0009062 is_a: ZFA:0009248 ! neuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009063 name: peripheral neuron namespace: zebrafish_anatomy subset: cell_slim synonym: "peripheral neurons" EXACT PLURAL [] xref: CL:0000111 xref: TAO:0009063 is_a: ZFA:0009009 ! neuron neural crest derived is_a: ZFA:0009248 ! neuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009064 name: mononuclear phagocyte namespace: zebrafish_anatomy def: "A vertebrate phagocyte with a single nucleus." [ZFIN:ZDB-PUB-070221-3] subset: cell_slim synonym: "mononuclear phagocytes" EXACT PLURAL [] xref: CL:0000113 xref: TAO:0009064 is_a: ZFA:0009357 ! mononuclear cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009065 name: endothelial cell namespace: zebrafish_anatomy subset: cell_slim synonym: "endothelial cells" EXACT PLURAL [] xref: CL:0000115 xref: TAO:0009065 is_a: ZFA:0009130 ! lining cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009066 name: pioneer neuron namespace: zebrafish_anatomy alt_id: ZFA:0000409 def: "Pioneer neurons establish a pathway in the developing central nervous system and then undergo programmed cell death once the adult axons, which follow them, have made connections with the target site. Thus, they are a transient cell type involved in axon guidance." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-070131-1] subset: cell_slim xref: CL:0000116 xref: TAO:0009066 is_a: ZFA:0009248 ! neuron relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: part_of ZFA:0000048 ! olfactory placode relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0009067 name: CNS neuron (sensu Vertebrata) namespace: zebrafish_anatomy subset: cell_slim synonym: "CNS neurons (sensu Vertebrata)" EXACT PLURAL [] xref: CL:0000117 xref: TAO:0009067 is_a: ZFA:0009248 ! neuron relationship: develops_from ZFA:0009168 ! neuroblast (sensu Vertebrata) relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009068 name: basket cell namespace: zebrafish_anatomy subset: cell_slim synonym: "basket cells" EXACT PLURAL [] xref: CL:0000118 xref: TAO:0009068 is_a: ZFA:0009067 ! CNS neuron (sensu Vertebrata) relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009069 name: Golgi cell namespace: zebrafish_anatomy subset: cell_slim synonym: "Golgi cells" EXACT PLURAL [] xref: CL:0000119 xref: TAO:0009069 is_a: ZFA:0009067 ! CNS neuron (sensu Vertebrata) relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009070 name: granule cell namespace: zebrafish_anatomy subset: cell_slim synonym: "granule cells" EXACT PLURAL [] xref: CL:0000120 xref: TAO:0009070 is_a: ZFA:0009067 ! CNS neuron (sensu Vertebrata) relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000008 ! brain relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009071 name: Purkinje cell namespace: zebrafish_anatomy def: "The output neuron of the cerebellar cortex." [CL:curator] subset: cell_slim synonym: "Purkinje cells" EXACT PLURAL [] xref: CL:0000121 xref: TAO:0009071 is_a: ZFA:0009067 ! CNS neuron (sensu Vertebrata) is_a: ZFA:0009239 ! efferent neuron relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001706 ! Purkinje cell layer corpus cerebelli relationship: part_of ZFA:0001709 ! Purkinje cell layer valvula cerebelli relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009072 name: stellate cell namespace: zebrafish_anatomy subset: cell_slim synonym: "stellate cells" EXACT PLURAL [] xref: CL:0000122 xref: TAO:0009072 is_a: ZFA:0009067 ! CNS neuron (sensu Vertebrata) relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009073 name: glial cell namespace: zebrafish_anatomy alt_id: ZFA:0000025 def: "A non-neuronal cell of the nervous system. They not only provide physical support, but also respond to injury, regulate the ionic and chemical composition of the extracellular milieu. Guide neuronal migration during development, and exchange metabolites with neurons." [CL:curator] subset: cell_slim synonym: "neuroglia" EXACT [] xref: CL:0000125 xref: TAO:0009073 is_a: ZFA:0009000 ! cell relationship: develops_from ZFA:0009010 ! glioblast relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000396 ! nervous system relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0009074 name: macroglial cell namespace: zebrafish_anatomy subset: cell_slim synonym: "macroglial cells" EXACT PLURAL [] xref: CL:0000126 xref: TAO:0009074 is_a: ZFA:0009147 ! glial cell (sensu Vertebrata) relationship: develops_from ZFA:0009169 ! glioblast (sensu Vertebrata) relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009075 name: astrocyte namespace: zebrafish_anatomy def: "A class of large neuroglial (macroglial) cells in the central nervous system - the largest and most numerous neuroglial cells in the brain and spinal cord. Astrocytes (from 'star' cells) are irregularly shaped with many long processes, including those with 'end feet' which form the glial (limiting) membrane and directly and indirectly contribute to the blood-brain barrier. They regulate the extracellular ionic and chemical environment, and 'reactive astrocytes' (along with microglia) respond to injury." [CL:curator] subset: cell_slim synonym: "astrocytes" EXACT PLURAL [] xref: CL:0000127 xref: TAO:0009075 is_a: ZFA:0009074 ! macroglial cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009076 name: oligodendrocyte namespace: zebrafish_anatomy def: "A class of large neuroglial (macroglial) cells in the central nervous system. Form the insulating myelin sheath of axons in the central nervous system." [CL:curator] subset: cell_slim synonym: "oligodendroglia" RELATED [] xref: CL:0000128 xref: TAO:0009076 is_a: ZFA:0009074 ! macroglial cell relationship: develops_from ZFA:0009169 ! glioblast (sensu Vertebrata) relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009077 name: microglial cell namespace: zebrafish_anatomy def: "A central nervous system macrophage found in the parenchyma of the central nervous system." [ZFIN:ZDB-PUB-070221-1] subset: cell_slim synonym: "microglia" EXACT [] xref: CL:0000129 xref: TAO:0009077 is_a: ZFA:0009141 ! macrophage relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009078 name: gut endothelial cell namespace: zebrafish_anatomy subset: cell_slim synonym: "gut endothelial cells" EXACT PLURAL [] xref: CL:0000131 xref: TAO:0009078 is_a: ZFA:0009038 ! columnar/cuboidal epithelial cell is_a: ZFA:0009065 ! endothelial cell relationship: develops_from ZFA:0009139 ! endodermal cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000112 ! gut relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0009079 name: corneal endothelial cell namespace: zebrafish_anatomy def: "Cell of the single layer of large flattened cells covering the surface of the cornea." [CL:curator] subset: cell_slim synonym: "corneal endothelial cells" EXACT PLURAL [] xref: CL:0000132 xref: TAO:0009079 is_a: ZFA:0009039 ! squamous epithelial cell is_a: ZFA:0009065 ! endothelial cell relationship: develops_from ZFA:0009003 ! cranial neural crest cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001687 ! corneal endothelium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009080 name: neurectodermal cell namespace: zebrafish_anatomy subset: cell_slim synonym: "neurectoderm cell" EXACT [] xref: CL:0000133 xref: TAO:0009080 is_a: ZFA:0009000 ! cell relationship: develops_from ZFA:0009137 ! ectodermal cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009081 name: mesenchymal cell namespace: zebrafish_anatomy def: "A cell that normally gives rise to other cells that are organized as three-dimensional masses, rather than sheets." [CL:curator] subset: cell_slim synonym: "mesenchymal cells" EXACT PLURAL [] xref: CL:0000134 xref: TAO:0009081 is_a: ZFA:0009000 ! cell relationship: develops_from ZFA:0009138 ! mesodermal cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009082 name: fat cell namespace: zebrafish_anatomy alt_id: ZFA:0009208 def: "A fat-storing cell found mostly in the abdominal cavity and subcutaneous tissue of mammals. Fat is usually stored in the form of triglycerides. Cell that stores fat in a unilocular lipid droplet, has a thin circular cytoplasm and pericentral nucleus. The average adult adipocyte diameter is between 30 and 40 micrometers. No adipocytes were observed in larvae on 6 or 9 dpf." [CL:curator, ZFIN:ZDB-PUB-090417-9, ZFIN:ZDB-PUB-101011-51] subset: cell_slim synonym: "adipocyte" EXACT [] synonym: "lipocyte" EXACT [] synonym: "lipocytes" EXACT [] xref: CL:0000136 xref: CL:0000450 xref: TAO:0009082 xref: TAO:0009208 is_a: ZFA:0009000 ! cell relationship: develops_from ZFA:0009081 ! mesenchymal cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005345 ! adipose tissue relationship: start ZFS:0000039 ! Larval:Days 7-13 [Term] id: ZFA:0009083 name: osteocyte namespace: zebrafish_anatomy def: "A mature osteoblast that has become embedded in the bone matrix. They occupy a small cavity, called lacuna, in the matrix and are connected to adjacent osteocytes via protoplasmic projections called canaliculi." [CL:curator] subset: cell_slim synonym: "osteocytes" EXACT PLURAL [] xref: CL:0000137 xref: TAO:0009083 is_a: ZFA:0009000 ! cell relationship: develops_from ZFA:0009031 ! osteoblast relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005734 ! lacunocanalicular system relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009084 name: chondrocyte namespace: zebrafish_anatomy def: "Polymorphic cell that form cartilage." [CL:curator] subset: cell_slim synonym: "chondrocytes" EXACT PLURAL [] xref: CL:0000138 xref: TAO:0009084 is_a: ZFA:0009093 ! GAG secreting cell is_a: ZFA:0009287 ! collagen secreting cell relationship: develops_from ZFA:0009027 ! chondroblast relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001501 ! cartilage element relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009085 name: amelocyte def: "Skeletogenic cell that produces enamel, overlies the odontogenic papilla, and arises from the differentiation of a preameloblast cell." [GOC:tfm] comment: Was CL:0000139, seems that cell type was merged into CL:0000059 along with CL:0000053. subset: cell_slim synonym: "amelocytes" EXACT PLURAL [] xref: CL:0000059 xref: TAO:0009085 is_a: ZFA:0009089 ! simple columnar epithelial cell relationship: develops_from ZFA:0009028 ! ameloblast relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009086 name: odontocyte namespace: zebrafish_anatomy subset: cell_slim synonym: "odontocytes" EXACT PLURAL [] xref: CL:0000140 xref: TAO:0009086 is_a: ZFA:0009000 ! cell relationship: develops_from ZFA:0009029 ! odontoblast relationship: develops_from ZFA:0009081 ! mesenchymal cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009087 name: cementocyte namespace: zebrafish_anatomy def: "An osteocytelike cell with numerous processes, trapped in a lacuna in the cement of the tooth." [ISBN:0781733901] subset: cell_slim synonym: "cementocytes" EXACT PLURAL [] xref: CL:0000141 xref: TAO:0009087 is_a: ZFA:0009000 ! cell relationship: develops_from ZFA:0009030 ! cementoblast relationship: develops_from ZFA:0009081 ! mesenchymal cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000694 ! ceratobranchial 5 tooth relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0009088 name: professional antigen presenting cell namespace: zebrafish_anatomy def: "A cell capable of processing and presenting lipid and protein antigens to T cells in order to initiate an immune response." [ZFIN:ZDB-PUB-070221-3] comment: Note change of name; nearly all somatic cells can present antigens to T cells via MHC Class I complexes leading to effector responses, but professional antigen presenting cells constitutively express MHC Class II as well as constimulatory molecules, and thus can initiate immune responses via T cells. subset: cell_slim synonym: "APC" EXACT [] xref: CL:0000145 xref: TAO:0009088 is_a: ZFA:0009309 ! leukocyte relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009089 name: simple columnar epithelial cell namespace: zebrafish_anatomy subset: cell_slim synonym: "simple columnar epithelial cells" EXACT PLURAL [] xref: CL:0000146 xref: TAO:0009089 is_a: ZFA:0009038 ! columnar/cuboidal epithelial cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009090 name: pigment cell namespace: zebrafish_anatomy alt_id: ZFA:0000057 subset: cell_slim synonym: "chromatocyte" EXACT [] synonym: "chromatophore" EXACT [] xref: CL:0000147 xref: TAO:0009090 is_a: ZFA:0009000 ! cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0009091 name: melanocyte namespace: zebrafish_anatomy alt_id: ZFA:0001091 def: "A pigment cell derived from the neural crest. Contains melanin-filled pigment granules, which gives a brown to black appearance." [CL:curator] subset: cell_slim synonym: "melanophore" EXACT [] xref: CL:0000148 xref: TAO:0009091 is_a: ZFA:0009090 ! pigment cell relationship: develops_from ZFA:0009249 ! melanoblast relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000368 ! integument relationship: part_of ZFA:0005915 ! iris melanophore layer relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0009092 name: exocrine cell namespace: zebrafish_anatomy def: "A cell of an exocrine gland, i.e. a gland that discharges its secretion via a duct." [ZFIN:ZDB-PUB-070221-5] subset: cell_slim synonym: "exocrine cells" EXACT PLURAL [] xref: CL:0000152 xref: TAO:0009092 is_a: ZFA:0009000 ! cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009093 name: GAG secreting cell namespace: zebrafish_anatomy subset: cell_slim synonym: "hyaluronic acid secreting cell" EXACT [] xref: CL:0000153 xref: TAO:0009093 is_a: ZFA:0009162 ! extracellular matrix secreting cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009094 name: goblet cell namespace: zebrafish_anatomy def: "A cell of the epithelial lining that produce and secrete mucins." [CL:curator] subset: cell_slim synonym: "chalice cell" EXACT [] xref: CL:0000160 xref: TAO:0009094 is_a: ZFA:0009159 ! mucus secreting cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001486 ! epithelium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009095 name: acid secreting cell namespace: zebrafish_anatomy subset: cell_slim synonym: "acid secreting cells" EXACT PLURAL [] xref: CL:0000161 xref: TAO:0009095 is_a: ZFA:0009000 ! cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009096 name: endocrine cell namespace: zebrafish_anatomy def: "A cell of an endocrine gland, ductless glands that secrete substances which are released directly into the circulation and which influence metabolism and other body functions." [CL:curator] subset: cell_slim synonym: "endocrine cells" EXACT PLURAL [] xref: CL:0000163 xref: TAO:0009096 is_a: ZFA:0009000 ! cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001158 ! endocrine system relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0009097 name: enteroendocrine cell namespace: zebrafish_anatomy def: "An endocrine cell that is located in the epithelium of the gastrointestinal tract." [SANBI:curator] subset: cell_slim synonym: "enteroendocrine cells" EXACT PLURAL [] xref: CL:0000164 xref: TAO:0009097 is_a: ZFA:0009096 ! endocrine cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009098 name: neuroendocrine cell namespace: zebrafish_anatomy def: "A neuron that has the specialized function to produce and secrete hormones, and that constitutes, in whole or in part, an endocrine organ or system." [CL:curator] subset: cell_slim synonym: "neurosecretory cell" EXACT [] xref: CL:0000165 xref: TAO:0009098 is_a: ZFA:0009096 ! endocrine cell is_a: ZFA:0009190 ! electrically responsive cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009099 name: chromaffin cell namespace: zebrafish_anatomy def: "A cell that stores epinephrine secretory vesicles. During times of stress, the nervous system signals the vesicles to secrete their hormonal content. Their name derives from their ability to stain a brownish color with chromic salts. Characteristically, they are located in the adrenal medulla and paraganglia of the sympathetic nervous system." [CL:curator] subset: cell_slim synonym: "phaeochromocyte" EXACT [] xref: CL:0000166 xref: TAO:0009099 is_a: ZFA:0009098 ! neuroendocrine cell relationship: develops_from ZFA:0009165 ! neural crest cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009100 name: peptide hormone secreting cell namespace: zebrafish_anatomy subset: cell_slim synonym: "peptide hormone secreting cells" EXACT PLURAL [] xref: CL:0000167 xref: TAO:0009100 is_a: ZFA:0009096 ! endocrine cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009101 name: insulin secreting cell namespace: zebrafish_anatomy subset: cell_slim synonym: "insulin secreting cells" EXACT PLURAL [] xref: CL:0000168 xref: TAO:0009101 is_a: ZFA:0009100 ! peptide hormone secreting cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009102 name: pancreatic B cell namespace: zebrafish_anatomy subset: cell_slim synonym: "beta cell" EXACT [] xref: CL:0000169 xref: TAO:0009102 is_a: ZFA:0009101 ! insulin secreting cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001371 ! pancreatic system relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009103 name: glucagon secreting cell namespace: zebrafish_anatomy subset: cell_slim synonym: "glucagon secreting cells" EXACT PLURAL [] xref: CL:0000170 xref: TAO:0009103 is_a: ZFA:0009100 ! peptide hormone secreting cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009104 name: pancreatic A cell namespace: zebrafish_anatomy subset: cell_slim synonym: "alpha cell" EXACT [] xref: CL:0000171 xref: TAO:0009104 is_a: ZFA:0009103 ! glucagon secreting cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001371 ! pancreatic system relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009105 name: somatostatin secreting cell namespace: zebrafish_anatomy subset: cell_slim synonym: "somatostatin secreting cells" EXACT PLURAL [] xref: CL:0000172 xref: TAO:0009105 is_a: ZFA:0009100 ! peptide hormone secreting cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009106 name: steroid hormone secreting cell namespace: zebrafish_anatomy subset: cell_slim synonym: "steroid hormone secreting cells" EXACT PLURAL [] xref: CL:0000174 xref: TAO:0009106 is_a: ZFA:0009096 ! endocrine cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009107 name: testosterone secreting cell namespace: zebrafish_anatomy subset: cell_slim synonym: "testosterone secreting cells" EXACT PLURAL [] xref: CL:0000177 xref: TAO:0009107 is_a: ZFA:0009106 ! steroid hormone secreting cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009108 name: Leydig cell namespace: zebrafish_anatomy def: "A Leydig cell is a testosterone-secreting cell in the interstitial area, between the seminiferous tubules, in the testis." [PMID:12050120] subset: cell_slim synonym: "interstitial cell" EXACT [] xref: CL:0000178 xref: TAO:0009108 is_a: ZFA:0009107 ! testosterone secreting cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009109 name: progesterone secreting cell namespace: zebrafish_anatomy subset: cell_slim synonym: "progesterone secreting cells" EXACT PLURAL [] xref: CL:0000179 xref: TAO:0009109 is_a: ZFA:0009106 ! steroid hormone secreting cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009110 name: estradiol secreting cell namespace: zebrafish_anatomy subset: cell_slim synonym: "estradiol secreting cells" EXACT PLURAL [] xref: CL:0000180 xref: TAO:0009110 is_a: ZFA:0009106 ! steroid hormone secreting cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009111 name: hepatocyte namespace: zebrafish_anatomy def: "The main structural component of the liver. They are specialized epithelial cells that are organized into interconnected plates called lobules." [CL:curator] subset: cell_slim synonym: "hepatocytes" EXACT PLURAL [] xref: CL:0000182 xref: TAO:0009111 is_a: ZFA:0009034 ! epithelial cell relationship: develops_from ZFA:0009398 ! hepatoblast relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000123 ! liver relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009112 name: pericyte namespace: zebrafish_anatomy def: "An elongated, contractile cell found wrapped about precapillary arterioles outside the basement membrane. Pericytes are present in capillaries where proper adventitial and muscle layer are missing (thus distinguishing this cell type from adventitial cells). They are relatively undifferentiated and may become fibroblasts, macrophages, or smooth muscle cells." [CL:curator, ISBN:0721662544, PMID:16807374, PMID:17986482, PMID:20024907] comment: CL:0000184 was merged into CL:0000699. subset: cell_slim synonym: "pericytes" EXACT PLURAL [] synonym: "perivascular cells" EXACT [] xref: CL:0000669 xref: TAO:0009112 is_a: ZFA:0009000 ! cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009113 name: myoepithelial cell namespace: zebrafish_anatomy subset: cell_slim synonym: "myoepithelial cells" EXACT PLURAL [] xref: CL:0000185 xref: TAO:0009113 is_a: ZFA:0009038 ! columnar/cuboidal epithelial cell relationship: develops_from ZFA:0009138 ! mesodermal cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009114 name: muscle cell namespace: zebrafish_anatomy def: "A mature contractile cell, commonly known as a myocyte, that forms one of three kinds of muscle." [CL:curator] subset: cell_slim synonym: "myocyte" EXACT [] synonym: "myofiber" EXACT [] xref: CL:0000187 xref: TAO:0009114 is_a: ZFA:0009190 ! electrically responsive cell relationship: develops_from ZFA:0009025 ! myoblast relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005145 ! muscle relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0009115 name: skeletal muscle cell namespace: zebrafish_anatomy subset: cell_slim synonym: "skeletal muscle fiber" EXACT [] synonym: "striated muscle cell" RELATED [] xref: CL:0000188 xref: TAO:0009115 is_a: ZFA:0005784 ! striated muscle cell relationship: develops_from ZFA:0009236 ! skeletal muscle myoblast relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005277 ! skeletal muscle relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0009116 name: slow muscle cell namespace: zebrafish_anatomy alt_id: ZFA:0001087 def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content." [CL:curator] subset: cell_slim synonym: "red muscle cell" EXACT [] synonym: "slow muscle fiber" EXACT [ISBN:0815316208] xref: CL:0000189 xref: TAO:0009116 is_a: ZFA:0009115 ! skeletal muscle cell relationship: develops_from ZFA:0001373 ! migratory slow muscle precursor cell relationship: develops_from ZFA:0009368 ! slow muscle myoblast relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0009117 name: fast muscle cell namespace: zebrafish_anatomy alt_id: ZFA:0001088 subset: cell_slim synonym: "white muscle cell" EXACT [] xref: CL:0000190 xref: TAO:0009117 is_a: ZFA:0009115 ! skeletal muscle cell relationship: develops_from ZFA:0009369 ! fast muscle myoblast relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000024 ! Segmentation:5-9 somites [Term] id: ZFA:0009118 name: smooth muscle cell namespace: zebrafish_anatomy def: "A non-striated, elongated, spindle-shaped cell found lining the digestive tract, uterus, and blood vessels. They develop from specialized myoblasts (smooth muscle myoblast)." [CL:curator] subset: cell_slim synonym: "non-striated muscle cell" EXACT [] xref: CL:0000192 xref: TAO:0009118 is_a: ZFA:0009114 ! muscle cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005274 ! smooth muscle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009119 name: pain receptor cell namespace: zebrafish_anatomy def: "The peripheral receptor for pain. Includes receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli. All mammalian nociceptors are free nerve endings." [CL:curator] subset: cell_slim synonym: "nociceptor" EXACT [] synonym: "nocireceptor" EXACT [] xref: CL:0000198 xref: TAO:0009119 is_a: ZFA:0009001 ! receptor cell (sensu Animalia) relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009120 name: mechanoreceptor cell namespace: zebrafish_anatomy def: "A cell specialized to transduce mechanical stimuli and relay that information centrally in the nervous system." [CL:curator] subset: cell_slim synonym: "mechanoreceptor cells" EXACT PLURAL [] xref: CL:0000199 xref: TAO:0009120 is_a: ZFA:0009001 ! receptor cell (sensu Animalia) relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009121 name: auditory receptor cell namespace: zebrafish_anatomy def: "A mechanoreceptor cell located in the inner ear that is sensitive to auditory stimuli. The accessory sensory structures are arranged so that appropriate stimuli cause movement of the hair-like projections (stereocilia and kinocilia) which relay the information centrally in the nervous system." [CL:curator] comment: Has alt_id CL:0000201. subset: cell_slim synonym: "auditory hair cell" EXACT [] synonym: "auditory receptor cells" EXACT PLURAL [] xref: CL:0000202 xref: TAO:0009121 is_a: ZFA:0009001 ! receptor cell (sensu Animalia) relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009122 name: obsolete_auditory hair cell namespace: zebrafish_anatomy is_obsolete: true replaced_by: ZFA:0009121 [Term] id: ZFA:0009123 name: thermoreceptor cell namespace: zebrafish_anatomy def: "A cellular receptor which mediates the sense of temperature. Thermoreceptors in vertebrates are mostly located under the skin. In mammals there are separate types of thermoreceptors for cold and for warmth and pain receptor cells which detect cold or heat extreme enough to cause pain." [CL:curator] subset: cell_slim synonym: "thermoreceptor cells" EXACT PLURAL [] xref: CL:0000205 xref: TAO:0009123 is_a: ZFA:0009001 ! receptor cell (sensu Animalia) relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009124 name: chemoreceptor cell namespace: zebrafish_anatomy def: "A cell specialized to detect chemical substances and relay that information centrally in the nervous system. Chemoreceptors may monitor external stimuli, as in taste and olfaction, or internal stimuli, such as the concentrations of oxygen and carbon dioxide in the blood." [CL:curator] subset: cell_slim synonym: "chemoreceptor cells" EXACT PLURAL [] xref: CL:0000206 xref: TAO:0009124 is_a: ZFA:0009001 ! receptor cell (sensu Animalia) relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009125 name: olfactory receptor cell namespace: zebrafish_anatomy subset: cell_slim synonym: "olfactory receptor neuron" EXACT [] synonym: "olfactory sensory neuron" EXACT [] synonym: "Schultze's cell" EXACT [] xref: CL:0000207 xref: TAO:0009125 is_a: ZFA:0009124 ! chemoreceptor cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001149 ! olfactory system relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0009126 name: taste receptor cell namespace: zebrafish_anatomy subset: cell_slim synonym: "taste receptor cells" EXACT PLURAL [] xref: CL:0000209 xref: TAO:0009126 is_a: ZFA:0009124 ! chemoreceptor cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001074 ! taste bud relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009127 name: photoreceptor cell namespace: zebrafish_anatomy def: "A cell specialized to detect and transduce light." [CL:curator] subset: cell_slim synonym: "photoreceptor cells" EXACT PLURAL [] xref: CL:0000210 xref: TAO:0009127 is_a: ZFA:0009001 ! receptor cell (sensu Animalia) relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009128 name: electrically active cell namespace: zebrafish_anatomy def: "A cell whose function is determined by the generation or the reception of an electric signal." [CL:curator] subset: cell_slim synonym: "electrically active cells" EXACT PLURAL [] xref: CL:0000211 xref: TAO:0009128 is_a: ZFA:0009000 ! cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009129 name: absorptive cell namespace: zebrafish_anatomy def: "A cell that takes up and metabolizes substances." [CL:curator] subset: cell_slim synonym: "absorptive cells" EXACT PLURAL [] xref: CL:0000212 xref: TAO:0009129 is_a: ZFA:0009000 ! cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009130 name: lining cell namespace: zebrafish_anatomy def: "A cell within an epithelial cell sheet whose main function is to act as an internal or external covering for a tissue or an organism." [CL:curator] subset: cell_slim synonym: "boundary cell" EXACT [] xref: CL:0000213 xref: TAO:0009130 is_a: ZFA:0009132 ! barrier cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009131 name: synovial cell namespace: zebrafish_anatomy subset: cell_slim synonym: "synovial cells" EXACT PLURAL [] xref: CL:0000214 xref: TAO:0009131 is_a: ZFA:0009093 ! GAG secreting cell is_a: ZFA:0009130 ! lining cell relationship: develops_from ZFA:0009081 ! mesenchymal cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005153 ! synovial joint relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009132 name: barrier cell namespace: zebrafish_anatomy def: "A cell whose primary function is to prevent the transport of stuff across compartments." [CL:curator] subset: cell_slim synonym: "barrier cells" EXACT PLURAL [] xref: CL:0000215 xref: TAO:0009132 is_a: ZFA:0009000 ! cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009133 name: Sertoli cell namespace: zebrafish_anatomy def: "A supporting cell projecting inward from the basement membrane of seminiferous tubules. They surround and nourish the developing male germ cells and secrete androgen binding protein. Their tight junctions with the spermatogonia and spermatocytes provide a blood-testis barrier." [CL:curator] subset: cell_slim synonym: "Sertoli cells" EXACT PLURAL [] xref: CL:0000216 xref: TAO:0009133 is_a: ZFA:0009132 ! barrier cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005882 ! spermatogenic cyst relationship: start ZFS:0000041 ! Larval:Days 21-29 [Term] id: ZFA:0009134 name: insulating cell namespace: zebrafish_anatomy subset: cell_slim synonym: "insulating cells" EXACT PLURAL [] xref: CL:0000217 xref: TAO:0009134 is_a: ZFA:0009132 ! barrier cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009135 name: myelinating Schwann cell namespace: zebrafish_anatomy def: "A neuroglial cell of the peripheral nervous system which forms the insulating myelin sheaths of peripheral axons." [CL:curator] subset: cell_slim synonym: "Schwann cells" EXACT PLURAL [] xref: CL:0000218 xref: TAO:0009135 is_a: ZFA:0009134 ! insulating cell is_a: ZFA:0009147 ! glial cell (sensu Vertebrata) is_a: ZFA:0009163 ! myelin accumulating cell relationship: develops_from ZFA:0001725 ! immature Schwann cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000142 ! peripheral nervous system relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0009136 name: motile cell namespace: zebrafish_anatomy def: "A cell that moves by its own activities." [CL:curator] subset: cell_slim synonym: "motile cells" EXACT PLURAL [] xref: CL:0000219 xref: TAO:0009136 is_a: ZFA:0009000 ! cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009137 name: ectodermal cell namespace: zebrafish_anatomy def: "A cell of the outer of the three germ layers of the embryo." [CL:curator] subset: cell_slim synonym: "ectoderm cell" EXACT [] xref: CL:0000221 xref: TAO:0009137 is_a: ZFA:0009000 ! cell relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000016 ! ectoderm relationship: start ZFS:0000020 ! Gastrula:75%-epiboly [Term] id: ZFA:0009138 name: mesodermal cell namespace: zebrafish_anatomy def: "A cell of the middle germ layer of the embryo." [CL:curator] subset: cell_slim synonym: "mesoblast" EXACT [] synonym: "mesoderm cell" EXACT [] xref: CL:0000222 xref: TAO:0009138 is_a: ZFA:0009000 ! cell relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000041 ! mesoderm relationship: start ZFS:0000020 ! Gastrula:75%-epiboly [Term] id: ZFA:0009139 name: endodermal cell namespace: zebrafish_anatomy def: "A cell of the inner of the three germ layers of the embryo." [CL:curator] subset: cell_slim synonym: "endoderm cell" EXACT [] xref: CL:0000223 xref: TAO:0009139 is_a: ZFA:0009000 ! cell relationship: end ZFS:0000035 ! Larval:Protruding-mouth relationship: part_of ZFA:0000017 ! endoderm relationship: start ZFS:0000020 ! Gastrula:75%-epiboly [Term] id: ZFA:0009140 name: phagocyte namespace: zebrafish_anatomy def: "Any cell capable of ingesting particulate matter via phagocytosis." [ZFIN:ZDB-PUB-070221-1] subset: cell_slim synonym: "phagocytes" EXACT PLURAL [] xref: CL:0000234 xref: TAO:0009140 is_a: ZFA:0009136 ! motile cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009141 name: macrophage namespace: zebrafish_anatomy def: "A mononuclear phagocyte present in variety of tissues, typically differentiated from monocytes, capable of phagocytosing a variety of extracellular particulate material, including immune complexes, microorganisms, and dead cells." [CL:curator] subset: cell_slim synonym: "histiocyte" EXACT [] xref: CL:0000235 xref: TAO:0009141 is_a: ZFA:0009064 ! mononuclear phagocyte is_a: ZFA:0009088 ! professional antigen presenting cell relationship: develops_from ZFA:0009265 ! monocyte relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001159 ! immune system relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0009142 name: B cell namespace: zebrafish_anatomy def: "A type of lymphocyte whose defining characteristic is the expression of an immunoglobulin complex." [ZFIN:ZDB-PUB-070221-3] subset: cell_slim synonym: "B lymphocyte" EXACT [] synonym: "B-cell" EXACT [] synonym: "B-lymphocyte" EXACT [] xref: CL:0000236 xref: TAO:0009142 is_a: ZFA:0009250 ! lymphocyte relationship: develops_from ZFA:0009349 ! pro-B cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009143 name: brush border epithelial cell namespace: zebrafish_anatomy subset: cell_slim synonym: "brush border epithelial cells" EXACT PLURAL [] xref: CL:0000239 xref: TAO:0009143 is_a: ZFA:0009038 ! columnar/cuboidal epithelial cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009144 name: stratified squamous epithelial cell namespace: zebrafish_anatomy subset: cell_slim synonym: "stratified squamous epithelial cells" EXACT PLURAL [] xref: CL:0000240 xref: TAO:0009144 is_a: ZFA:0009034 ! epithelial cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009145 name: stratified cuboidal epithelial cell namespace: zebrafish_anatomy subset: cell_slim synonym: "stratified cuboidal epithelial cells" EXACT PLURAL [] xref: CL:0000241 xref: TAO:0009145 is_a: ZFA:0009034 ! epithelial cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009146 name: Merkel cell namespace: zebrafish_anatomy def: "A modified epidermal cell located in the stratum basale. They are found mostly in areas where sensory perception is acute. Merkel cells are closely associated with an expanded terminal bulb of an afferent myelinated nerve fiber." [CL:curator] subset: cell_slim synonym: "Merkel cells" EXACT PLURAL [] xref: CL:0000242 xref: TAO:0009146 is_a: ZFA:0009000 ! cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009147 name: glial cell (sensu Vertebrata) namespace: zebrafish_anatomy def: "A non-neuronal cells of the nervous system. They not only provide physical support, but also respond to injury, regulate the ionic and chemical composition of the extracellular milieu. Form the myelin insulation of nervous pathways, guide neuronal migration during development, and exchange metabolites with neurons. Neuroglia have high-affinity transmitter uptake systems, voltage-dependent and transmitter-gated ion channels, and can release transmitters, but their role in signaling (as in many other functions) is unclear." [CL:curator] subset: cell_slim synonym: "glial cells (sensu Vertebrata)" EXACT PLURAL [] xref: CL:0000243 xref: TAO:0009147 is_a: ZFA:0009073 ! glial cell relationship: develops_from ZFA:0009169 ! glioblast (sensu Vertebrata) relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009148 name: transitional epithelial cell namespace: zebrafish_anatomy subset: cell_slim synonym: "transitional epithelial cells" EXACT PLURAL [] xref: CL:0000244 xref: TAO:0009148 is_a: ZFA:0009034 ! epithelial cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009149 name: Mauthner neuron namespace: zebrafish_anatomy alt_id: ZFA:0000087 alt_id: ZFA:0000613 def: "Is a hindbrain interneuron. Giant reticulospinal neurons possessing thick crossed axons and positioned dorsally in the hindbrain tegmentum at the level of entrance of the eighth cranial nerve. The Mauthner neuron is paired. The M-cell has two large invariant dendrites: The lateral dendrite terminates in the sensory neuropil of the acoustico-lateral area, and the ventral dendrite terminates in the neuropil of the motor tegmentum. Fine dendrites are present, and mostly arise from three regions; from the terminus of each major dendrite and from the ventral surface of the perikaryon." [GOC:CVS, GOC:MH, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-599, ZFIN:ZDB-PUB-961014-770] subset: cell_slim xref: CL:0000246 xref: TAO:0009149 is_a: ZFA:0005865 ! reticulospinal neuron is_a: ZFA:0009194 ! CNS short range interneuron relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000545 ! medulla oblongata relationship: part_of ZFA:0001032 ! rhombomere 4 relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0009150 name: Rohon-Beard neuron namespace: zebrafish_anatomy alt_id: ZFA:0000002 def: "Primary sensory neurons with cell bodies located in the dorsal spinal cord, that innervate the integument of the trunk and tail at early larval stages. The cutaneous axons of Rohon-Beard neurons display a broad spectrum of peripheral axon branching patterns. Most Rohon-Beard neurons undergo apoptosis by 5dpf." [ZFIN:ZDB-PUB-120807-45] subset: cell_slim synonym: "RB neuron" EXACT [] synonym: "Rohon-Beard cell" EXACT [] synonym: "Rohon-Beard neurons" EXACT PLURAL [] xref: CL:0000247 xref: TAO:0009150 is_a: ZFA:0009053 ! sensory neuron relationship: end ZFS:0000040 ! Larval:Days 14-20 relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0009151 name: hatching gland cell namespace: zebrafish_anatomy subset: cell_slim synonym: "hatching gland cells" EXACT PLURAL [] xref: CL:0000249 xref: TAO:0009151 is_a: ZFA:0009000 ! cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009152 name: extramedullary cell namespace: zebrafish_anatomy subset: cell_slim synonym: "extramedullary cells" EXACT PLURAL [] xref: CL:0000251 xref: TAO:0009152 is_a: ZFA:0009053 ! sensory neuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009153 name: eurydendroid cell namespace: zebrafish_anatomy subset: cell_slim synonym: "eurydendroid cells" EXACT PLURAL [] xref: CL:0000253 xref: TAO:0009153 is_a: ZFA:0009239 ! efferent neuron relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000603 ! valvula cerebelli relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009154 name: eye photoreceptor cell namespace: zebrafish_anatomy subset: cell_slim synonym: "eye photoreceptor cells" EXACT PLURAL [] xref: CL:0000287 xref: TAO:0009154 is_a: ZFA:0009127 ! photoreceptor cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000143 ! retinal photoreceptor layer relationship: part_of ZFA:0001464 ! retinal outer nuclear layer relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009155 name: somatotropin secreting cell namespace: zebrafish_anatomy def: "An acidophilic cell of the anterior pituitary that produces growth hormone, somatotropin." [CL:curator] subset: cell_slim synonym: "growth hormone secreting cell" RELATED [] synonym: "somatotrope" RELATED [] synonym: "somatotroph" RELATED [] synonym: "somatotrophin secreting cell" EXACT [] synonym: "somatotropic cell" EXACT [] synonym: "somatrophic cell" RELATED [] xref: CL:0000295 xref: TAO:0009155 is_a: ZFA:0009100 ! peptide hormone secreting cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005581 ! proximal pars anterior relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0009156 name: gamete namespace: zebrafish_anatomy def: "A mature sexual reproductive cell having a single set of unpaired chromosomes." [GOC:tfm] subset: cell_slim synonym: "gametes" EXACT PLURAL [] xref: CL:0000300 xref: TAO:0009156 is_a: ZFA:0009016 ! germ line cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000413 ! gonad relationship: start ZFS:0000041 ! Larval:Days 21-29 [Term] id: ZFA:0009157 name: keratin accumulating cell namespace: zebrafish_anatomy subset: cell_slim synonym: "keratin accumulating cells" EXACT PLURAL [] xref: CL:0000311 xref: TAO:0009157 is_a: ZFA:0009000 ! cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009158 name: keratinocyte namespace: zebrafish_anatomy def: "An epidermal cell which synthesizes keratin and undergoes a characteristic change as it moves upward from the basal layers of the epidermis to the cornified (horny) layer of the skin. Successive stages of differentiation of the keratinocytes forming the epidermal layers are basal cell, spinous or prickle cell, and the granular cell." [CL:curator] subset: cell_slim synonym: "keratinocytes" EXACT PLURAL [] xref: CL:0000312 xref: TAO:0009158 is_a: ZFA:0009157 ! keratin accumulating cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009159 name: mucus secreting cell namespace: zebrafish_anatomy alt_id: ZFA:0000129 subset: cell_slim synonym: "mucous cell" EXACT [] xref: CL:0000319 xref: TAO:0009159 is_a: ZFA:0009000 ! cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000368 ! integument relationship: part_of ZFA:0001159 ! immune system relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0009160 name: seminal fluid secreting cell namespace: zebrafish_anatomy subset: cell_slim synonym: "seminal fluid secreting cells" EXACT PLURAL [] xref: CL:0000321 xref: TAO:0009160 is_a: ZFA:0009000 ! cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009161 name: metanephric mesenchyme stem cell namespace: zebrafish_anatomy comment: No metanephrose in zebrafish. Consider nephrogenic mesenchyme stem cell ZFA:0009187. subset: cell_slim synonym: "metanephric mesenchyme stem cells" EXACT PLURAL [] xref: CL:0000324 xref: TAO:0009161 is_obsolete: true [Term] id: ZFA:0009162 name: extracellular matrix secreting cell namespace: zebrafish_anatomy subset: cell_slim synonym: "extracellular matrix secreting cells" EXACT PLURAL [] xref: CL:0000327 xref: TAO:0009162 is_a: ZFA:0009226 ! stromal cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009163 name: myelin accumulating cell namespace: zebrafish_anatomy subset: cell_slim synonym: "myelin accumulating cells" EXACT PLURAL [] xref: CL:0000328 xref: TAO:0009163 is_a: ZFA:0009000 ! cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009164 name: oxygen accumulating cell namespace: zebrafish_anatomy subset: cell_slim synonym: "oxygen accumulating cells" EXACT PLURAL [] xref: CL:0000329 xref: TAO:0009164 is_a: ZFA:0009000 ! cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009165 name: neural crest cell namespace: zebrafish_anatomy def: "A cell of the neural crest. The neural crest is a strip of specialized ectoderm, the neural plate border, which flanks each side of the embryonic neural plate. Neural crest cells are multipotent. Premigratory neural crest cells are found at the neural plate boarder, some of which will undergo ectomesenchymal transition and delamination to form migratory neural crest cells. Most of the cranial and all of the spinal sensory ganglion cells arise by differentiation of neural crest cells." [GOC:ymb, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "neural crest cells" EXACT PLURAL [] is_a: ZFA:0007089 ! embryonic cell relationship: end ZFS:0000031 ! Pharyngula:Prim-25 relationship: part_of ZFA:0000045 ! neural crest relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0009166 name: mesenchyme condensation cell namespace: zebrafish_anatomy subset: cell_slim synonym: "mesenchyme condensation cells" EXACT PLURAL [] xref: CL:0000335 xref: TAO:0009166 is_a: ZFA:0009000 ! cell relationship: develops_from ZFA:0009081 ! mesenchymal cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009167 name: adrenal medulla cell namespace: zebrafish_anatomy subset: cell_slim synonym: "chromafin cell" EXACT [] xref: CL:0000336 xref: TAO:0009167 is_a: ZFA:0009000 ! cell relationship: develops_from ZFA:0009004 ! trunk neural crest cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009168 name: neuroblast (sensu Vertebrata) namespace: zebrafish_anatomy subset: cell_slim xref: CL:0000337 xref: TAO:0009168 is_a: ZFA:0009011 ! neuroblast relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009169 name: glioblast (sensu Vertebrata) namespace: zebrafish_anatomy subset: cell_slim synonym: "glioblasts (sensu Vertebrata)" EXACT PLURAL [] xref: CL:0000339 xref: TAO:0009169 is_a: ZFA:0009010 ! glioblast relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009170 name: pigment cell (sensu Vertebrata) namespace: zebrafish_anatomy subset: cell_slim synonym: "pigment cells (sensu Vertebrata)" EXACT PLURAL [] xref: CL:0000342 xref: TAO:0009170 is_a: ZFA:0009090 ! pigment cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009171 name: visual pigment cell (sensu Vertebrata) namespace: zebrafish_anatomy subset: cell_slim synonym: "visual pigment cells (sensu Vertebrata)" EXACT PLURAL [] xref: CL:0000343 xref: TAO:0009171 is_a: ZFA:0009170 ! pigment cell (sensu Vertebrata) relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000152 ! retina relationship: start ZFS:0000030 ! Pharyngula:Prim-15 [Term] id: ZFA:0009172 name: non-visual cell (sensu Vertebrata) namespace: zebrafish_anatomy comment: Obsoleted because CL obsoleted. Consider pigment cell ZFA:0009090 subset: cell_slim synonym: "non-visual cells (sensu Vertebrata)" EXACT PLURAL [] xref: CL:0000344 xref: TAO:0009172 is_obsolete: true [Term] id: ZFA:0009173 name: dental papilla cell namespace: zebrafish_anatomy subset: cell_slim synonym: "dental papilla cells" EXACT PLURAL [] xref: CL:0000345 xref: TAO:0009173 is_a: ZFA:0009000 ! cell relationship: develops_from ZFA:0009003 ! cranial neural crest cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005140 ! dental papilla relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009174 name: scleral cell namespace: zebrafish_anatomy def: "A cell of the sclera of the eye." [GOC:cvs, ORCiD:0000-0002-2244-7917] subset: cell_slim synonym: "scleral cells" EXACT PLURAL [] xref: CL:0000347 xref: TAO:0009174 is_a: ZFA:0009000 ! cell relationship: develops_from ZFA:0009003 ! cranial neural crest cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005563 ! sclera relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009175 name: choroidal cell of the eye namespace: zebrafish_anatomy def: "A cell of the choroid of the eye." [GOC:cvs, ORCiD:0000-0002-2244-7917] subset: cell_slim synonym: "choroidal cells" EXACT PLURAL [] xref: CL:0000348 xref: TAO:0009175 is_a: ZFA:0009000 ! cell relationship: develops_from ZFA:0009003 ! cranial neural crest cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009176 name: extraembryonic cell namespace: zebrafish_anatomy subset: cell_slim synonym: "extraembryonic cells" EXACT PLURAL [] xref: CL:0000349 xref: TAO:0009176 is_a: ZFA:0009000 ! cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009177 name: blastoderm cell namespace: zebrafish_anatomy def: "An undifferentiated cell produced by early cleavages of the fertilized egg (zygote)." [CL:curator] subset: cell_slim synonym: "blastomere" RELATED [] xref: CL:0000353 xref: TAO:0009177 is_a: ZFA:0009002 ! early embryonic cell relationship: end ZFS:0000022 ! Gastrula:Bud relationship: part_of ZFA:0001176 ! blastoderm relationship: start ZFS:0000016 ! Blastula:30%-epiboly [Term] id: ZFA:0009178 name: blastemal cell namespace: zebrafish_anatomy subset: cell_slim synonym: "blastemal cells" EXACT PLURAL [] xref: CL:0000354 xref: TAO:0009178 is_a: ZFA:0009020 ! multi fate stem cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009179 name: muscle stem cell namespace: zebrafish_anatomy subset: cell_slim synonym: "muscle stem cells" EXACT PLURAL [] xref: CL:0000355 xref: TAO:0009179 is_a: ZFA:0009013 ! single fate stem cell is_a: ZFA:0009291 ! muscle precursor cell relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0009180 name: stratified epithelial stem cell namespace: zebrafish_anatomy subset: cell_slim synonym: "stratified epithelial stem cells" EXACT PLURAL [] xref: CL:0000357 xref: TAO:0009180 is_a: ZFA:0009000 ! cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009181 name: vascular associated smooth muscle cell namespace: zebrafish_anatomy subset: cell_slim synonym: "vascular associated smooth muscle cells" EXACT PLURAL [] xref: CL:0000359 xref: TAO:0009181 is_a: ZFA:0009118 ! smooth muscle cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009182 name: gastrula cell namespace: zebrafish_anatomy def: "A cell of the embryo in the early stage following the blastula, characterized by morphogenetic cell movements, cell differentiation, and the formation of the three germ layers." [CL:curator] subset: cell_slim synonym: "gastrula cells" EXACT PLURAL [] xref: CL:0000361 xref: TAO:0009182 is_a: ZFA:0009002 ! early embryonic cell relationship: end ZFS:0000019 ! Gastrula:Shield relationship: start ZFS:0000017 ! Gastrula:50%-epiboly [Term] id: ZFA:0009183 name: epidermal cell namespace: zebrafish_anatomy def: "A cell found in the outermost layer of the organism." [CL:curator] subset: cell_slim synonym: "epidermal cells" EXACT PLURAL [] xref: CL:0000362 xref: TAO:0009183 is_a: ZFA:0009039 ! squamous epithelial cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009184 name: osteoprogenitor cell namespace: zebrafish_anatomy subset: cell_slim synonym: "osteoprogenitor cells" EXACT PLURAL [] xref: CL:0000375 xref: TAO:0009184 is_a: ZFA:0009013 ! single fate stem cell relationship: develops_from ZFA:0009166 ! mesenchyme condensation cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009185 name: sensory processing neuron namespace: zebrafish_anatomy subset: cell_slim synonym: "sensory processing neurons" EXACT PLURAL [] xref: CL:0000379 xref: TAO:0009185 is_a: ZFA:0009248 ! neuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009186 name: neurosecretory neuron namespace: zebrafish_anatomy subset: cell_slim synonym: "neurosecretory neurons" EXACT PLURAL [] xref: CL:0000381 xref: TAO:0009186 is_a: ZFA:0009239 ! efferent neuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009187 name: nephrogenic mesenchyme stem cell namespace: zebrafish_anatomy subset: cell_slim synonym: "nephrogenic mesenchyme stem cells" EXACT PLURAL [] xref: CL:0000383 xref: TAO:0009187 is_a: ZFA:0009020 ! multi fate stem cell relationship: develops_from ZFA:0009081 ! mesenchymal cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009188 name: ligament cell namespace: zebrafish_anatomy subset: cell_slim synonym: "ligament cells" EXACT PLURAL [] xref: CL:0000384 xref: TAO:0009188 is_a: ZFA:0009000 ! cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001675 ! ligament relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009189 name: tendon cell namespace: zebrafish_anatomy subset: cell_slim synonym: "muscle attachment cell" EXACT [] xref: CL:0000388 xref: TAO:0009189 is_a: ZFA:0009000 ! cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009190 name: electrically responsive cell namespace: zebrafish_anatomy def: "A cell whose function is determined by its response to an electric signal." [CL:curator] subset: cell_slim synonym: "electrically responsive cells" EXACT PLURAL [] xref: CL:0000393 xref: TAO:0009190 is_a: ZFA:0009128 ! electrically active cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009191 name: CNS interneuron namespace: zebrafish_anatomy subset: cell_slim synonym: "CNS interneurons" EXACT PLURAL [] xref: CL:0000402 xref: TAO:0009191 is_a: ZFA:0009051 ! interneuron is_a: ZFA:0009067 ! CNS neuron (sensu Vertebrata) relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009193 name: electrically signaling cell namespace: zebrafish_anatomy def: "A cell that initiates an electrical signal and passes that signal to another cell." [CL:curator] subset: cell_slim synonym: "electrically signaling cells" EXACT PLURAL [] xref: CL:0000404 xref: TAO:0009193 is_a: ZFA:0009128 ! electrically active cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009194 name: CNS short range interneuron namespace: zebrafish_anatomy subset: cell_slim synonym: "CNS short range interneurons" EXACT PLURAL [] xref: CL:0000406 xref: TAO:0009194 is_a: ZFA:0009191 ! CNS interneuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009195 name: CNS long range interneuron namespace: zebrafish_anatomy subset: cell_slim synonym: "CNS long range interneurons" EXACT PLURAL [] xref: CL:0000410 xref: TAO:0009195 is_a: ZFA:0009191 ! CNS interneuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009196 name: hypodermal cell namespace: zebrafish_anatomy subset: cell_slim synonym: "hypodermal cells" EXACT PLURAL [] xref: CL:0000411 xref: TAO:0009196 is_a: ZFA:0009039 ! squamous epithelial cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009198 name: xanthophore namespace: zebrafish_anatomy alt_id: ZFA:0001092 def: "A pigment cell derived from the neural crest. Contains carotenoid pigments in structures called pterinosomes or xanthosomes. This gives an appearance ranging from a golden yellow to orange and red." [CL:curator] subset: cell_slim xref: CL:0000430 xref: TAO:0009198 is_a: ZFA:0009090 ! pigment cell relationship: develops_from ZFA:0005245 ! xanthoblast relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000368 ! integument relationship: start ZFS:0000032 ! Pharyngula:High-pec [Term] id: ZFA:0009199 name: iridophore namespace: zebrafish_anatomy alt_id: ZFA:0001090 def: "A pigment cell derived from the neural crest. The cell contains flat light-reflecting platelets, probably of guanine, in stacks called reflecting platets or iridisomes. The color-generating components produce a silver, gold, or iridescent color." [CL:curator] subset: cell_slim xref: CL:0000431 xref: TAO:0009199 is_a: ZFA:0009090 ! pigment cell relationship: develops_from ZFA:0005328 ! iridoblast relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000368 ! integument relationship: part_of ZFA:0005914 ! argentum relationship: part_of ZFA:0005916 ! tapetum lucidum relationship: start ZFS:0000032 ! Pharyngula:High-pec [Term] id: ZFA:0009200 name: reticular cell namespace: zebrafish_anatomy subset: cell_slim synonym: "reticular cells" EXACT PLURAL [] xref: CL:0000432 xref: TAO:0009200 is_a: ZFA:0009026 ! fibroblast relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009201 name: alkali secreting cell namespace: zebrafish_anatomy subset: cell_slim synonym: "alkali secreting cells" EXACT PLURAL [] xref: CL:0000435 xref: TAO:0009201 is_a: ZFA:0009000 ! cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009202 name: follicle stimulating hormone secreting cell namespace: zebrafish_anatomy subset: cell_slim synonym: "delta basophil" EXACT [] synonym: "gonadotrope" EXACT [] synonym: "gonadotroph" EXACT [] xref: CL:0000437 xref: TAO:0009202 is_a: ZFA:0009100 ! peptide hormone secreting cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005581 ! proximal pars anterior relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009203 name: luteinizing hormone secreting cell namespace: zebrafish_anatomy subset: cell_slim synonym: "delta basophila" EXACT [] synonym: "gonadotrope" EXACT [] synonym: "gonadotroph" RELATED [] xref: CL:0000438 xref: TAO:0009203 is_a: ZFA:0009100 ! peptide hormone secreting cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005581 ! proximal pars anterior relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009204 name: prolactin secreting cell namespace: zebrafish_anatomy def: "An acidophilic cell of the anterior pituitary that produces prolactin." [CL:curator] subset: cell_slim synonym: "epsilon-acidophil" EXACT [] synonym: "lactotrope" EXACT [] synonym: "lactotroph" EXACT [] synonym: "lactotropic cell" EXACT [] synonym: "mammotrope" EXACT [] synonym: "mammotroph" EXACT [] synonym: "mammotrophic cell" EXACT [] synonym: "mammotropic cell" EXACT [] xref: CL:0000439 xref: TAO:0009204 is_a: ZFA:0009100 ! peptide hormone secreting cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005580 ! rostral pars anterior relationship: start ZFS:0000035 ! Larval:Protruding-mouth [Term] id: ZFA:0009205 name: melanocyte stimulating hormone secreting cell namespace: zebrafish_anatomy def: "A cell of the intermediate pituitary that produces melanocyte stimulating hormone." [CL:curator] subset: cell_slim synonym: "melanotrope" EXACT [] synonym: "melanotroph" EXACT [] xref: CL:0000440 xref: TAO:0009205 is_a: ZFA:0009100 ! peptide hormone secreting cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001197 ! pars intermedia relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0009206 name: calcitonin secreting cell namespace: zebrafish_anatomy subset: cell_slim synonym: "calcitonin secreting cells" EXACT PLURAL [] xref: CL:0000443 xref: TAO:0009206 is_a: ZFA:0009100 ! peptide hormone secreting cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009207 name: parathyroid hormone secreting cell namespace: zebrafish_anatomy subset: cell_slim synonym: "chief cell" EXACT [] xref: TAO:0009207 is_a: ZFA:0009100 ! peptide hormone secreting cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009209 name: dendritic cell namespace: zebrafish_anatomy def: "A cell of hematopoietic origin, typically resident in particular tissues, specialized in the uptake, processing, and transport of antigens to lymph nodes for the purpose of stimulating an immune response via T cell activation." [ZFIN:ZDB-PUB-070221-3] subset: cell_slim synonym: "interdigitating cell" RELATED [] synonym: "veiled cell" RELATED [] xref: CL:0000451 xref: TAO:0009209 is_a: ZFA:0009088 ! professional antigen presenting cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009210 name: thyroid hormone secreting cell namespace: zebrafish_anatomy subset: cell_slim synonym: "thyroid hormone secreting cells" EXACT PLURAL [] xref: CL:0000452 xref: TAO:0009210 is_a: ZFA:0009096 ! endocrine cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009211 name: epinephrin secreting cell namespace: zebrafish_anatomy subset: cell_slim synonym: "epinephrin secreting cells" EXACT PLURAL [] xref: CL:0000454 xref: TAO:0009211 is_a: ZFA:0009212 ! biogenic amine secreting cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009212 name: biogenic amine secreting cell namespace: zebrafish_anatomy subset: cell_slim synonym: "biogenic amine secreting cells" EXACT PLURAL [] xref: CL:0000457 xref: TAO:0009212 is_a: ZFA:0009096 ! endocrine cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009213 name: serotonin secreting cell namespace: zebrafish_anatomy subset: cell_slim synonym: "serotin secreting cells" EXACT PLURAL [] xref: CL:0000458 xref: TAO:0009213 is_a: ZFA:0009212 ! biogenic amine secreting cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009214 name: norepinephrine secreting cell namespace: zebrafish_anatomy def: "A cell capable of producting norepinephrine. Norepinephrine is a catecholamine with multiple roles including as a hormone and a neurotransmitter. In addition, epinephrine is synthesized from norepinephrine by the actions of the phenylethanolamine N-methyltransferase enzyme." [CL:curator] subset: cell_slim synonym: " noradrenergic cell" EXACT [] synonym: "norepinephrin secreting cells" EXACT PLURAL [] xref: CL:0000459 xref: TAO:0009214 is_a: ZFA:0009212 ! biogenic amine secreting cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009215 name: glucocorticoid secreting cell namespace: zebrafish_anatomy subset: cell_slim synonym: "glucocorticoid secreting cells" EXACT PLURAL [] xref: CL:0000460 xref: TAO:0009215 is_a: ZFA:0009106 ! steroid hormone secreting cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009216 name: adrenocorticotropic hormone secreting cell namespace: zebrafish_anatomy def: "A basophil cell of the anterior pituitary that produces adrenocorticotropic hormone, or corticotropin." [CL:curator] subset: cell_slim synonym: "adrenocorticotrophic hormone secreting cell" RELATED [] synonym: "corticotrope" EXACT [] synonym: "corticotroph" EXACT [] synonym: "corticotrophin hormone secreting cell" RELATED [] synonym: "corticotropin hormone secreting cell" EXACT [] xref: CL:0000467 xref: TAO:0009216 is_a: ZFA:0009100 ! peptide hormone secreting cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005580 ! rostral pars anterior relationship: start ZFS:0000035 ! Larval:Protruding-mouth [Term] id: ZFA:0009217 name: digestive enzyme secreting cell namespace: zebrafish_anatomy subset: cell_slim synonym: "digestive enzyme secreting cells" EXACT PLURAL [] xref: CL:0000470 xref: TAO:0009217 is_a: ZFA:0009000 ! cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000339 ! digestive system relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0009218 name: thyroid stimulating hormone secreting cell namespace: zebrafish_anatomy def: "A basophil cell of the anterior pituitary that produces thyroid stimulating hormone, thyrotrophin." [CL:curator] subset: cell_slim synonym: "beta-basophil" EXACT [] synonym: "thyrotrope" EXACT [] synonym: "thyrotroph" EXACT [] xref: CL:0000476 xref: TAO:0009218 is_a: ZFA:0009100 ! peptide hormone secreting cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005581 ! proximal pars anterior relationship: start ZFS:0000033 ! Hatching:Long-pec [Term] id: ZFA:0009219 name: visible light photoreceptor cell namespace: zebrafish_anatomy subset: cell_slim synonym: "visible light photoreceptor cells" EXACT PLURAL [] xref: CL:0000488 xref: TAO:0009219 is_a: ZFA:0009127 ! photoreceptor cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009220 name: photopic photoreceptor cell namespace: zebrafish_anatomy subset: cell_slim synonym: "photopic photoreceptor cells" EXACT PLURAL [] xref: CL:0000490 xref: TAO:0009220 is_a: ZFA:0009219 ! visible light photoreceptor cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009221 name: UV sensitive photoreceptor cell namespace: zebrafish_anatomy subset: cell_slim synonym: "UV sensitive photoreceptor cells" EXACT PLURAL [] xref: CL:0000494 xref: TAO:0009221 is_a: ZFA:0009127 ! photoreceptor cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009222 name: blue sensitive photoreceptor cell namespace: zebrafish_anatomy subset: cell_slim synonym: "blue sensitive photoreceptor cells" EXACT PLURAL [] xref: CL:0000495 xref: TAO:0009222 is_a: ZFA:0009220 ! photopic photoreceptor cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009223 name: green sensitive photoreceptor cell namespace: zebrafish_anatomy subset: cell_slim synonym: "green sensitive photoreceptor cells" EXACT PLURAL [] xref: CL:0000496 xref: TAO:0009223 is_a: ZFA:0009220 ! photopic photoreceptor cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009224 name: red sensitive photoreceptor cell namespace: zebrafish_anatomy subset: cell_slim synonym: "red sensitive photoreceptor cells" EXACT PLURAL [] xref: CL:0000497 xref: TAO:0009224 is_a: ZFA:0009220 ! photopic photoreceptor cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009225 name: inhibitory interneuron namespace: zebrafish_anatomy subset: cell_slim synonym: "inhibitory interneurons" EXACT PLURAL [] xref: CL:0000498 xref: TAO:0009225 is_a: ZFA:0009051 ! interneuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009226 name: stromal cell namespace: zebrafish_anatomy def: "A connective tissue cell of an organ found in the loose connective tissue. These are most often associated with the uterine mucosa and the ovary as well as the hematopoietic system and elsewhere." [CL:curator] subset: cell_slim synonym: "stromal cells" EXACT PLURAL [] xref: CL:0000499 xref: TAO:0009226 is_a: ZFA:0009000 ! cell relationship: develops_from ZFA:0009081 ! mesenchymal cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009227 name: granulosa cell namespace: zebrafish_anatomy def: "A supporting cell for the developing female gamete in the ovary of mammals. They develop from the coelomic epithelial cells of the gonadal ridge. Granulosa cells form a single layer around the mammalian oocyte in the primordial ovarian follicle and advance to form a multilayered cumulus oophorus surrounding the ovum in the Graafian follicle. The major functions of granulosa cells include the production of steroids and LH receptors." [CL:curator] subset: cell_slim synonym: "granulosa cells" EXACT PLURAL [] xref: CL:0000501 xref: TAO:0009227 is_a: ZFA:0009106 ! steroid hormone secreting cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009228 name: D cell namespace: zebrafish_anatomy def: "A cell found throughout the gastrointestinal tract and in the pancreas. They secrete somatostatin in both an endocrine and paracrine manner. Somatostatin inhibits gastrin, cholecystokinin, insulin, glucagon, pancreatic enzymes, and gastric hydrochloric acid. A variety of substances which inhibit gastric acid secretion (vasoactive intestinal peptide, calcitonin gene-related peptide, cholecystokinin, beta-adrenergic agonists, and gastric inhibitory peptide) are thought to act by releasing somatostatin." [CL:curator] subset: cell_slim synonym: "D cells" EXACT PLURAL [] xref: CL:0000502 xref: TAO:0009228 is_a: ZFA:0009097 ! enteroendocrine cell is_a: ZFA:0009105 ! somatostatin secreting cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000339 ! digestive system relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0009229 name: theca cell namespace: zebrafish_anatomy def: "A flattened stroma cell forming a sheath or theca outside the basal lamina lining the mature ovarian follicle. Thecal interstitial or stromal cells are steroidogenic, and produce primarily androgens which serve as precursors of estrogens in the granulosa cells." [CL:curator] subset: cell_slim synonym: "theca cells" EXACT PLURAL [] xref: CL:0000503 xref: TAO:0009229 is_a: ZFA:0009226 ! stromal cell is_a: ZFA:0009271 ! androgen secreting cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009230 name: substance P secreting cell namespace: zebrafish_anatomy subset: cell_slim synonym: "substance P secreting cells" EXACT PLURAL [] xref: CL:0000505 xref: TAO:0009230 is_a: ZFA:0009100 ! peptide hormone secreting cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009231 name: enkephalin secreting cell namespace: zebrafish_anatomy subset: cell_slim synonym: "enkephalin secreting cells" EXACT PLURAL [] xref: CL:0000506 xref: TAO:0009231 is_a: ZFA:0009232 ! endorphin secreting cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009232 name: endorphin secreting cell namespace: zebrafish_anatomy subset: cell_slim synonym: "endorphin secreting cells" EXACT PLURAL [] xref: CL:0000507 xref: TAO:0009232 is_a: ZFA:0009100 ! peptide hormone secreting cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009233 name: paracrine cell namespace: zebrafish_anatomy subset: cell_slim synonym: "paracrine cells" EXACT PLURAL [] xref: CL:0000512 xref: TAO:0009233 is_a: ZFA:0009000 ! cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009234 name: cardiac muscle myoblast namespace: zebrafish_anatomy def: "A precursor cell destined to differentiate into cardiac myocytes." [CL:curator] subset: cell_slim synonym: "cardioblast" RELATED [] xref: CL:0000513 xref: TAO:0009234 is_a: ZFA:0009025 ! myoblast relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009235 name: smooth muscle myoblast namespace: zebrafish_anatomy def: "A precursor cell destined to differentiate into smooth muscle myocytes." [CL:curator] subset: cell_slim synonym: "satellite cell" RELATED [] xref: CL:0000514 xref: TAO:0009235 is_a: ZFA:0009025 ! myoblast relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009236 name: skeletal muscle myoblast namespace: zebrafish_anatomy def: "A myoblast that differentiates into skeletal muscle fibers." [CL:curator] subset: cell_slim synonym: "skeletal muscle myoblasts" EXACT PLURAL [] xref: CL:0000515 xref: TAO:0009236 is_a: ZFA:0009025 ! myoblast relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009237 name: perineuronal satellite cell namespace: zebrafish_anatomy def: "A non-neuronal cell that surrounds the neuronal cell bodies of the ganglia." [CL:curator] subset: cell_slim synonym: "perineural satellite cell" EXACT [] xref: CL:0000516 xref: TAO:0009237 is_a: ZFA:0009147 ! glial cell (sensu Vertebrata) relationship: develops_from ZFA:0009169 ! glioblast (sensu Vertebrata) relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009238 name: afferent neuron namespace: zebrafish_anatomy def: "A neuron which conveys sensory information centrally from the periphery." [CL:curator] subset: cell_slim synonym: "input neuron" EXACT [] xref: CL:0000526 xref: TAO:0009238 is_a: ZFA:0009009 ! neuron neural crest derived is_a: ZFA:0009248 ! neuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009239 name: efferent neuron namespace: zebrafish_anatomy def: "A neuron which sends impulses peripherally to activate muscles or secretory cells." [CL:curator] subset: cell_slim synonym: "output neuron" EXACT [] xref: CL:0000527 xref: TAO:0009239 is_a: ZFA:0009009 ! neuron neural crest derived is_a: ZFA:0009248 ! neuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009240 name: nitrergic neuron namespace: zebrafish_anatomy def: "A nerve cell where transmission is mediated by nitric oxide." [CL:curator] subset: cell_slim synonym: "nitrergic neurons" EXACT PLURAL [] xref: CL:0000528 xref: TAO:0009240 is_a: ZFA:0009248 ! neuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009241 name: pigmented epithelial cell namespace: zebrafish_anatomy subset: cell_slim synonym: "pigmented epithelial cells" EXACT PLURAL [] xref: CL:0000529 xref: TAO:0009241 is_a: ZFA:0009038 ! columnar/cuboidal epithelial cell relationship: develops_from ZFA:0009306 ! neuroepithelial cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009242 name: primary neuron namespace: zebrafish_anatomy alt_id: ZFA:0000055 subset: cell_slim xref: CL:0000530 xref: TAO:0009242 is_a: ZFA:0009248 ! neuron relationship: end ZFS:0000038 ! Larval:Day 6 relationship: part_of ZFA:0001120 ! neuroectoderm relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0009243 name: CaP motoneuron namespace: zebrafish_anatomy def: "A primary motor neuron part of the spinal cord. The CaP motoneuron is found within 1 soma diameter of the ventral root. The axon of the CaP motoneuron extends ventrally from the ventral root, within the space between the notochord and the medial surface of the axial muscles. Below the notochord, the axon extends within the ventral median septum to the ventral edge of the axial muscles, where it turns dorsally and laterally to project over the lateral surface of the axial muscles." [ZFIN:ZDB-PUB-961014-272, ZFIN:ZDB-PUB-961014-649, ZFIN:ZDB-PUB-961014-814] subset: cell_slim synonym: "CAP motoneurons" EXACT PLURAL [] synonym: "caudal primary motoneuron" EXACT [] xref: CL:0000532 xref: TAO:0009243 is_a: ZFA:0009244 ! primary motor neuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009244 name: primary motor neuron namespace: zebrafish_anatomy alt_id: ZFA:0000572 def: "Motor neurons that arise during the first day of development. Primary motoneurons have larger diameter cell bodies and axons than secondary motoneurons and are positioned more dorsally and medially than secondary motoneurons. Primary motoneurons are present in a single bilateral pair of clusters in each spinal segment and innervate axial muscle fibers in the corresponding pair of myotomes. Axons make a conspicuous loop around the Mauthner axon before entering the ventral root." [ISBN:0471530506] subset: cell_slim synonym: "primary motoneuron" EXACT [] xref: CL:0000533 xref: TAO:0009244 is_a: ZFA:0009052 ! motor neuron is_a: ZFA:0009242 ! primary neuron relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0009245 name: primary interneuron namespace: zebrafish_anatomy alt_id: ZFA:0000945 subset: cell_slim xref: CL:0000534 xref: TAO:0009245 is_a: ZFA:0009051 ! interneuron is_a: ZFA:0009242 ! primary neuron relationship: end ZFS:0000029 ! Pharyngula:Prim-5 relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0009246 name: secondary neuron namespace: zebrafish_anatomy subset: cell_slim synonym: "secondary neurons" EXACT PLURAL [] xref: CL:0000535 xref: TAO:0009246 is_a: ZFA:0009248 ! neuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009247 name: secondary motor neuron namespace: zebrafish_anatomy alt_id: ZFA:0000584 def: "Motor neurons that develop several hours later than primary motoneurons and sprout axons several hours after the primary motor growth cones have extended to the periphery. They have smaller cell bodies and are located more ventrally and laterally in the spinal cord than primary motoneurons. Axons usually project directly out of the spinal cord with no apparent contact with the Mauthner axon and are positioned lateral to the Mauthner axon in their path to the ventral root. Secondary motoneurons have smaller fields, which can overlap one another, and innervate many fewer muscle fibers than primary motoneurons." [ISBN:0471530506, ZFIN:ZDB-PUB-961014-1247] subset: cell_slim synonym: "secondary motoneuron" EXACT [] xref: CL:0000536 xref: TAO:0009247 is_a: ZFA:0009052 ! motor neuron is_a: ZFA:0009246 ! secondary neuron relationship: end ZFS:0000043 ! Juvenile:Days 45-89 relationship: start ZFS:0000028 ! Segmentation:26+ somites [Term] id: ZFA:0009248 name: neuron namespace: zebrafish_anatomy alt_id: ZFA:0000134 def: "The basic cellular unit of nervous tissue. Each neuron consists of a body, an axon, and dendrites. Their purpose is to receive, conduct, and transmit impulses in the nervous system." [CL:curator] subset: cell_slim xref: CL:0000540 xref: TAO:0009248 is_a: ZFA:0009190 ! electrically responsive cell is_a: ZFA:0009193 ! electrically signaling cell relationship: develops_from ZFA:0009011 ! neuroblast relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000396 ! nervous system relationship: start ZFS:0000023 ! Segmentation:1-4 somites [Term] id: ZFA:0009249 name: melanoblast namespace: zebrafish_anatomy def: "A cell that originates from the neural crest and differentiates into a pigment cell." [CL:curator] subset: cell_slim synonym: "melanoblasts" EXACT PLURAL [] xref: CL:0000541 xref: TAO:0009249 is_a: ZFA:0009000 ! cell relationship: develops_from ZFA:0009165 ! neural crest cell relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0009250 name: lymphocyte namespace: zebrafish_anatomy def: "A cell of the B cell, T cell, or natural killer cell lineage." [ZFIN:ZDB-PUB-070221-3] subset: cell_slim synonym: "lymphocytes" EXACT PLURAL [] xref: CL:0000542 xref: TAO:0009250 is_a: ZFA:0009357 ! mononuclear cell relationship: develops_from ZFA:0009023 ! common lymphoid progenitor relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009251 name: granulocyte monocyte progenitor cell namespace: zebrafish_anatomy def: "A progenitor cell committed to the granulocyte and monocyte lineages." [http://www.copewithcytokines.de, ZFIN:ZDB-PUB-070221-1] subset: cell_slim synonym: "CFU-C , Colony forming unit in culture" RELATED [] synonym: "colony forming unit granulocyte macrophage" EXACT [ZFIN:ZDB-PUB-070221-1] synonym: "GMP" EXACT [ZFIN:ZDB-PUB-070221-1] synonym: "granulocyte-macrophage progenitor" EXACT [ZFIN:ZDB-PUB-070221-1] xref: CL:0000557 xref: TAO:0009251 is_a: ZFA:0005830 ! hematopoietic cell relationship: develops_from ZFA:0009021 ! common myeloid progenitor relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009252 name: reticulocyte namespace: zebrafish_anatomy def: "An immature erythrocyte showing a basophilic reticulum under vital staining." [ZFIN:ZDB-PUB-070221-1] subset: cell_slim synonym: "reticulocytes" EXACT PLURAL [] xref: CL:0000558 xref: TAO:0009252 is_a: ZFA:0009044 ! blood cell is_a: ZFA:0009325 ! erythroid lineage cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009253 name: promonocyte namespace: zebrafish_anatomy def: "A precursor in the monocytic series, being a cell intermediate in development between the monoblast and monocyte." [ZFIN:ZDB-PUB-070221-1] subset: cell_slim synonym: "promonocytes" EXACT PLURAL [] xref: CL:0000559 xref: TAO:0009253 is_a: ZFA:0009356 ! myeloid lineage restricted progenitor cell relationship: develops_from ZFA:0009017 ! monoblast relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009254 name: band form neutrophil namespace: zebrafish_anatomy def: "A late neutrophilic metamyelocyte in which the nucleus is in the form of a curved or coiled band, not having acquired the typical multilobar shape of the mature neutrophil." [ZFIN:ZDB-PUB-070221-1] subset: cell_slim synonym: "band" RELATED [] synonym: "band cell" EXACT [] synonym: "band form" EXACT [] synonym: "rod neutrophil" EXACT [] synonym: "stab cell" EXACT [] xref: CL:0000560 xref: TAO:0009254 is_a: ZFA:0009328 ! immature neutrophil relationship: develops_from ZFA:0009268 ! neutrophilic metamyelocyte relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009255 name: amacrine cell namespace: zebrafish_anatomy def: "Interneuron of the vertebrate retina. They integrate, modulate, and interpose a temporal domain in the visual message presented to the retinal ganglion cells, with which they synapse in the inner plexiform layer." [CL:curator] subset: cell_slim synonym: "amacrine neuron" EXACT [] xref: CL:0000561 xref: TAO:0009255 is_a: ZFA:0009051 ! interneuron relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000119 ! retinal inner nuclear layer relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009256 name: nucleate erythrocyte namespace: zebrafish_anatomy def: "An erythrocyte having a nucleus." [CL:curator] subset: cell_slim synonym: "RBC" EXACT [] synonym: "red blood cell" EXACT [] xref: CL:0000562 xref: TAO:0009256 is_a: ZFA:0009044 ! blood cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009257 name: neutrophilic promyelocyte namespace: zebrafish_anatomy def: "A neutrophil precursor in the granulocytic series, being a cell intermediate in development between a myeloblast and myelocyte, and containing a few, as yet undifferentiated, cytoplasmic granules." [ZFIN:ZDB-PUB-070221-1] subset: cell_slim synonym: "neutrophilic premyelocyte" EXACT [] synonym: "neutrophilic progranulocyte" EXACT [] synonym: "promyelocyte" EXACT [] xref: CL:0000564 xref: TAO:0009257 is_a: ZFA:0009000 ! cell relationship: develops_from ZFA:0009018 ! neutrophilic myeloblast relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009258 name: angioblastic mesenchymal cell namespace: zebrafish_anatomy subset: cell_slim synonym: "angioblast" EXACT [] xref: CL:0000566 xref: TAO:0009258 is_a: ZFA:0009020 ! multi fate stem cell relationship: develops_from ZFA:0009081 ! mesenchymal cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009259 name: cardiac mesenchymal cell namespace: zebrafish_anatomy def: "A mesenchymal cell found in the developing heart." [PMID:18816864] subset: cell_slim synonym: "cardiac mesenchymal cells" EXACT PLURAL [] xref: CL:0000569 xref: TAO:0009259 is_a: ZFA:0009000 ! cell relationship: develops_from ZFA:0009004 ! trunk neural crest cell relationship: develops_from ZFA:0009081 ! mesenchymal cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009260 name: parafollicular cell namespace: zebrafish_anatomy subset: cell_slim synonym: "C cell" EXACT [] xref: CL:0000570 xref: TAO:0009260 is_a: ZFA:0009000 ! cell relationship: develops_from ZFA:0009165 ! neural crest cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009261 name: leucophore namespace: zebrafish_anatomy def: "A pigment cell derived from the neural crest. Contains uric acid or other purine crystals deposited in stacks called leucosomes. The crystals reflect light and this gives a white appearance under white light." [CL:curator] subset: cell_slim synonym: "leucophores" EXACT PLURAL [] xref: CL:0000571 xref: TAO:0009261 is_a: ZFA:0009090 ! pigment cell relationship: develops_from ZFA:0005329 ! leucoblast relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000368 ! integument relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009262 name: retinal cone cell namespace: zebrafish_anatomy def: "One of the two photoreceptor cell types in the vertebrate retina. In cones the photopigment is in invaginations of the cell membrane of the outer segment. Cones are less sensitive to light than rods, but they provide vision with higher spatial and temporal acuity, and the combination of signals from cones with different pigments allows color vision." [CL:curator] subset: cell_slim synonym: "retinal cone cells" EXACT PLURAL [] xref: CL:0000573 xref: TAO:0009262 is_a: ZFA:0009154 ! eye photoreceptor cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009263 name: erythrophore namespace: zebrafish_anatomy def: "A pigment cell derived from the neural crest. Contains pteridine and/or carotenoid pigments in structures called pterinosomes or erythrosomes. This gives an orange to red appearance." [CL:curator] subset: cell_slim synonym: "erythrophores" EXACT PLURAL [] xref: CL:0000574 xref: TAO:0009263 is_a: ZFA:0009090 ! pigment cell relationship: develops_from ZFA:0005331 ! pigment erythroblast relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000368 ! integument relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009264 name: corneal epithelial cell namespace: zebrafish_anatomy subset: cell_slim synonym: "corneal epithelial cells" EXACT PLURAL [] xref: CL:0000575 xref: TAO:0009264 is_a: ZFA:0009039 ! squamous epithelial cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009265 name: monocyte namespace: zebrafish_anatomy def: "Myeloid mononuclear recirculating leukocyte that can act as a precursor of tissue macrophages, osteoclasts and some populations of tissue dendritic cells." [CL:curator] subset: cell_slim synonym: "monocytes" EXACT PLURAL [] xref: CL:0000576 xref: TAO:0009265 is_a: ZFA:0009064 ! mononuclear phagocyte is_a: ZFA:0009088 ! professional antigen presenting cell relationship: develops_from ZFA:0009253 ! promonocyte relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009266 name: neutrophilic myelocyte namespace: zebrafish_anatomy def: "A neutrophil precursor in the granulocytic series, being a cell intermediate in development between a promyelocyte and a metamyelocyte; in this stage, differentiation of cytoplasmic granules has begun." [ZFIN:ZDB-PUB-070221-1] subset: cell_slim synonym: "neutrophilic myelocytes" EXACT PLURAL [] xref: CL:0000580 xref: TAO:0009266 is_a: ZFA:0009328 ! immature neutrophil relationship: develops_from ZFA:0009257 ! neutrophilic promyelocyte relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009267 name: peritoneal macrophage namespace: zebrafish_anatomy def: "A macrophage resident in the peritoneum under non-inlfammatory conditions." [CL:curator] subset: cell_slim synonym: "peritoneal macrophages" EXACT PLURAL [] xref: CL:0000581 xref: TAO:0009267 is_a: ZFA:0009141 ! macrophage relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009268 name: neutrophilic metamyelocyte namespace: zebrafish_anatomy def: "A neutrophil precursor in the granulocytic series, being a cell intermediate in development between a myelocyte and the band form neutrophil. The protein synthesis seen in earlier stages decreases or stops; the nucleus becomes indented and its chromatin becomes coarse and clumped; and the cytoplasm becomes pink like that of a mature granulocyte." [ZFIN:ZDB-PUB-070221-1] subset: cell_slim synonym: "juvenile neutrophil" EXACT [] xref: CL:0000582 xref: TAO:0009268 is_a: ZFA:0009328 ! immature neutrophil relationship: develops_from ZFA:0009266 ! neutrophilic myelocyte relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009269 name: enterocyte namespace: zebrafish_anatomy def: "An epithelial cell that has its apical plasma membrane folded into microvilli to provide ample surface for the absorption of nutrients from the intestinal lumen." [SANBI:curator] subset: cell_slim synonym: "enterocytes" EXACT PLURAL [] xref: CL:0000584 xref: TAO:0009269 is_a: ZFA:0009143 ! brush border epithelial cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005124 ! intestinal epithelium relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009270 name: odontoclast namespace: zebrafish_anatomy def: "A specialized osteoclast associated with the absorption and removal of cementum." [CL:curator] subset: cell_slim synonym: "odontoclasts" EXACT PLURAL [] xref: CL:0000588 xref: TAO:0009270 is_a: ZFA:0009047 ! osteoclast relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009271 name: androgen secreting cell namespace: zebrafish_anatomy subset: cell_slim synonym: "androgen secreting cells" EXACT PLURAL [] xref: CL:0000593 xref: TAO:0009271 is_a: ZFA:0009106 ! steroid hormone secreting cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009272 name: skeletal muscle satellite cell namespace: zebrafish_anatomy def: "An elongated, spindle-shaped, quiescent myoblast lying in close contact with adult skeletal muscle. They are thought to play a role in muscle repair and regeneration." [CL:curator] subset: cell_slim synonym: "skeletal muscle satellite cells" EXACT PLURAL [] xref: CL:0000594 xref: TAO:0009272 is_a: ZFA:0009236 ! skeletal muscle myoblast relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009273 name: pyramidal cell namespace: zebrafish_anatomy def: "A projection neuron in the cerebral cortex and the hippocampus. Pyramidal cells have a pyramid-shaped soma with the apex and an apical dendrite pointed toward the pial surface and other dendrites and an axon emerging from the base. The axons may have local collaterals but also project outside their cortical region." [CL:curator] subset: cell_slim synonym: "pyramidal cells" EXACT PLURAL [] xref: CL:0000598 xref: TAO:0009273 is_a: ZFA:0009067 ! CNS neuron (sensu Vertebrata) relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009274 name: pressoreceptor cell namespace: zebrafish_anatomy def: "A receptor in the vascular system, particularly the aorta and carotid sinus, which is sensitive to stretch of the vessel walls." [CL:curator] subset: cell_slim synonym: "pressoreceptor cells" EXACT PLURAL [] xref: CL:0000602 xref: TAO:0009274 is_a: ZFA:0009370 ! stretch receptor cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009275 name: retinal rod cell namespace: zebrafish_anatomy def: "One of the two photoreceptor cell types of the vertebrate retina. In rods the photopigment is in stacks of membranous disks separate from the outer cell membrane. Rods are more sensitive to light than cones, but rod mediated vision has less spatial and temporal resolution than cone vision." [CL:curator] subset: cell_slim synonym: "retinal rod cells" EXACT PLURAL [] xref: CL:0000604 xref: TAO:0009275 is_a: ZFA:0009154 ! eye photoreceptor cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009276 name: GABAergic neuron namespace: zebrafish_anatomy def: "A neuron that uses GABA as a vesicular neurotransmitter." [GOC:tfm] subset: cell_slim synonym: "GABAergic neurons" EXACT PLURAL [] xref: CL:0000617 xref: TAO:0009276 is_a: ZFA:0009248 ! neuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009277 name: acinar cell namespace: zebrafish_anatomy def: "A secretory cell that is grouped together with other cells of the same type to form grape shaped clusters known as acini (singular acinus)." [GOC:tfm] subset: cell_slim synonym: "acinar cells" EXACT PLURAL [] xref: CL:0000622 xref: TAO:0009277 is_a: ZFA:0009000 ! cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009278 name: natural killer cell namespace: zebrafish_anatomy def: "A lymphocyte that can spontaneously kill a variety of target cells without prior antigenic activation via germline encoded activation receptors and also regulate immune responses via cytokine release and direct contact with other cells." [ZFIN:ZDB-PUB-070221-3] subset: cell_slim synonym: "large granular lymphocyte" RELATED [] synonym: "NK cell" EXACT [] synonym: "null cell" RELATED [] xref: CL:0000623 xref: TAO:0009278 is_a: ZFA:0009250 ! lymphocyte relationship: develops_from ZFA:0009348 ! pro-NK cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009279 name: ito cell namespace: zebrafish_anatomy def: "A cell that is found in the perisinusoidal space of the liver that is capable of multiple roles including storage of retinol, presentation of antigen to T cells (including CD1d-restricted NKT cells), and upon activation, production of extracellular matrix components that can contribute to liver fibrosis. This activated state has a myofibroblast-like phenotype." [GOC:tm] subset: cell_slim synonym: "hepatic stellate cell" EXACT [] synonym: "perisinusoidal cell" EXACT [] xref: CL:0000632 xref: TAO:0009279 is_a: ZFA:0009162 ! extracellular matrix secreting cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009280 name: Muller cell namespace: zebrafish_anatomy def: "Glial cell of the retina that forms a support structure stretching radially across the thickness of the retina. Muller cell bodies are found in the inner nuclear layer and send projection to the outer limiting membrane and inner limiting membrane." [GOC:cvs, GOC:ymb, http://webvision.med.utah.edu/book/part-ii-anatomy-and-physiology-of-the-retina/glial-cells-of-the-retina/, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "Mueller cell" EXACT [ZFIN:ZDB-PUB-150220-2] synonym: "Muller cells" EXACT PLURAL [] xref: CL:0000636 xref: TAO:0009280 is_a: ZFA:0009075 ! astrocyte relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000119 ! retinal inner nuclear layer relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009281 name: folliculostellate cell namespace: zebrafish_anatomy def: "A supportive cell of the vertebrate pituitary that provides macromolecular transport and secretes hormones." [CL:curator] subset: cell_slim synonym: "folliculostellate cells" EXACT PLURAL [] xref: CL:0000642 xref: TAO:0009281 is_a: ZFA:0009096 ! endocrine cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000118 ! hypophysis relationship: start ZFS:0000027 ! Segmentation:20-25 somites [Term] id: ZFA:0009282 name: Bergmann glial cell namespace: zebrafish_anatomy subset: cell_slim synonym: "Bergmann glial cells" EXACT PLURAL [] xref: CL:0000644 xref: TAO:0009282 is_a: ZFA:0009075 ! astrocyte relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009283 name: mesangial cell namespace: zebrafish_anatomy subset: cell_slim synonym: "mesangial cells" EXACT PLURAL [] xref: CL:0000650 xref: TAO:0009283 is_a: ZFA:0009000 ! cell relationship: develops_from ZFA:0009081 ! mesenchymal cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009284 name: pinealocyte namespace: zebrafish_anatomy subset: cell_slim synonym: "pinealocytes" EXACT PLURAL [] xref: CL:0000652 xref: TAO:0009284 is_a: ZFA:0009096 ! endocrine cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000019 ! epiphysis relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0009285 name: podocyte namespace: zebrafish_anatomy subset: cell_slim synonym: "podocytes" EXACT PLURAL [] xref: CL:0000653 xref: TAO:0009285 is_a: ZFA:0009034 ! epithelial cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000163 ! renal system relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0009286 name: fenestrated cell namespace: zebrafish_anatomy subset: cell_slim synonym: "window cell" EXACT [] xref: CL:0000666 xref: TAO:0009286 is_a: ZFA:0009034 ! epithelial cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009287 name: collagen secreting cell namespace: zebrafish_anatomy subset: cell_slim synonym: "collagen secreting cells" EXACT PLURAL [] xref: CL:0000667 xref: TAO:0009287 is_a: ZFA:0009162 ! extracellular matrix secreting cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009288 name: primordial germ cell namespace: zebrafish_anatomy alt_id: ZFA:0000065 def: "A primordial germ cell is a diploid germ cell precursors that transiently exist in the embryo before they enter into close association with the somatic cells of the gonad and become irreversibly committed as germ cells." [CL:curator] subset: cell_slim synonym: "PGC" EXACT [] xref: CL:0000670 xref: TAO:0009288 is_a: ZFA:0009016 ! germ line cell is_a: ZFA:0009136 ! motile cell relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000632 ! reproductive system relationship: start ZFS:0000014 ! Blastula:Sphere [Term] id: ZFA:0009289 name: gut absorptive cell namespace: zebrafish_anatomy def: "Cell of the intestinal epithelium with a brush border made up of many parallel packed microvilli; associated with absorption, particularly of macromolecules." [CL:curator] subset: cell_slim synonym: "gut absorptive cells" EXACT PLURAL [] xref: CL:0000677 xref: TAO:0009289 is_a: ZFA:0009129 ! absorptive cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000112 ! gut relationship: start ZFS:0000025 ! Segmentation:10-13 somites [Term] id: ZFA:0009290 name: glutamatergic neuron namespace: zebrafish_anatomy subset: cell_slim synonym: "glutamatergic neurons" EXACT PLURAL [] xref: CL:0000679 xref: TAO:0009290 is_a: ZFA:0009248 ! neuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009291 name: muscle precursor cell namespace: zebrafish_anatomy subset: cell_slim synonym: "muscle precursor cells" EXACT PLURAL [] xref: CL:0000680 xref: TAO:0009291 is_a: ZFA:0009000 ! cell relationship: develops_from ZFA:0000041 ! mesoderm relationship: develops_from ZFA:0009138 ! mesodermal cell relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000020 ! Gastrula:75%-epiboly [Term] id: ZFA:0009292 name: radial glial cell namespace: zebrafish_anatomy def: "A transient cell present only in the developing CNS. Functions as both a precursor cell and as a scaffold to support neuronal migration." [CL:curator] subset: cell_slim synonym: "radial glial cells" EXACT PLURAL [] xref: CL:0000681 xref: TAO:0009292 is_a: ZFA:0009168 ! neuroblast (sensu Vertebrata) relationship: develops_from ZFA:0001120 ! neuroectoderm relationship: develops_from ZFA:0009306 ! neuroepithelial cell relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0009293 name: M cell namespace: zebrafish_anatomy def: "An absorptive cell of the mammalian gut epithelium that endocytoses microorganisms and intact macromolecules from the gut lumen and transports them to the subepithelial space where they are presented to antigen-presenting cells and lymphocytes." [CL:curator] subset: cell_slim synonym: "M cells" EXACT PLURAL [] xref: CL:0000682 xref: TAO:0009293 is_a: ZFA:0009034 ! epithelial cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009294 name: ependymoglial cell namespace: zebrafish_anatomy def: "A cell that transports hormones from neurosecretory cells." [CL:curator] subset: cell_slim synonym: "ependymoglial cells" EXACT PLURAL [] xref: CL:0000683 xref: TAO:0009294 is_a: ZFA:0009075 ! astrocyte relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009295 name: cerebrospinal fluid secreting cell namespace: zebrafish_anatomy subset: cell_slim synonym: "cerebrospinal fluid secreting cells" EXACT PLURAL [] xref: CL:0000686 xref: TAO:0009295 is_a: ZFA:0009038 ! columnar/cuboidal epithelial cell relationship: develops_from ZFA:0009165 ! neural crest cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009296 name: perijunctional fibroblast namespace: zebrafish_anatomy def: "A fibroblast-like cell that provides support at neuromuscular junctions in vertebrates and are localized outside the synaptic basal lamina." [CL:curator] subset: cell_slim synonym: "perijunctional fibroblasts" EXACT PLURAL [] xref: CL:0000688 xref: TAO:0009296 is_a: ZFA:0009026 ! fibroblast relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009297 name: stellate interneuron namespace: zebrafish_anatomy subset: cell_slim synonym: "stellate interneurons" EXACT PLURAL [] xref: CL:0000691 xref: TAO:0009297 is_a: ZFA:0009051 ! interneuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009298 name: terminal Schwann cell namespace: zebrafish_anatomy def: "A neuroglial cell of the peripheral nervous system inside the basal lamina of the neuromuscular junction providing chemical and physical support to the synapse." [CL:curator] subset: cell_slim synonym: "terminal Schwann cells" EXACT PLURAL [] xref: CL:0000692 xref: TAO:0009298 is_a: ZFA:0009000 ! cell relationship: develops_from ZFA:0009073 ! glial cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000142 ! peripheral nervous system relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009299 name: neuroglioform cell namespace: zebrafish_anatomy def: "A stellate interneuron having 7-10 dendrites that may branch." [CL:curator] subset: cell_slim synonym: "spiderweb cell" EXACT [] xref: CL:0000693 xref: TAO:0009299 is_a: ZFA:0009297 ! stellate interneuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009300 name: Cajal-Retzius cell namespace: zebrafish_anatomy def: "One of a transient population of pioneering neurons in the cerebral cortex. These cells are slender bipolar cells of the developing marginal zone. One feature of these cells in mammals is that they express the Reelin gene." [CL:curator] subset: cell_slim synonym: "Cajal-Retzius cells" EXACT PLURAL [] xref: CL:0000695 xref: TAO:0009300 is_a: ZFA:0009067 ! CNS neuron (sensu Vertebrata) relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009301 name: dopaminergic neuron namespace: zebrafish_anatomy def: "A neuron that releases dopamine as a neurotransmitter." [CL:dhill] subset: cell_slim synonym: "dopaminergic neurons" EXACT PLURAL [] xref: CL:0000700 xref: TAO:0009301 is_a: ZFA:0009248 ! neuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009302 name: sustentacular cell namespace: zebrafish_anatomy def: "Cell that provides some or all mechanical, nutritional and phagocytic support to their neighbors." [CL:curator] subset: cell_slim synonym: "sustentacular cells" EXACT PLURAL [] xref: CL:0000703 xref: TAO:0009302 is_a: ZFA:0009000 ! cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009303 name: endothelial tip cell namespace: zebrafish_anatomy def: "A specialized endothelial cell that senses extracellular signals and guides the directed growth of blood vessels." [CL:curator] subset: cell_slim synonym: "endothelial tip cells" EXACT PLURAL [] xref: CL:0000704 xref: TAO:0009303 is_a: ZFA:0009036 ! blood vessel endothelial cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009304 name: choroid plexus epithelial cell namespace: zebrafish_anatomy def: "Specialized ependymal cell that produces the cerebrospinal fluid from the blood and secretes it into the lumen of the brain and spinal chord." [CL:curator] subset: cell_slim synonym: "choroid plexus epithelial cells" EXACT PLURAL [] xref: CL:0000706 xref: TAO:0009304 is_a: ZFA:0009033 ! ependymal cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001443 ! choroid plexus relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009305 name: leptomeningeal cell namespace: zebrafish_anatomy def: "Stromal cell that forms the internal covering of the vertebrate brain and produces ECM for this and the choroid plexus." [CL:curator] subset: cell_slim synonym: "leptomemingeal cell" RELATED [] synonym: "leptomeningeal cells" EXACT PLURAL [] xref: CL:0000708 xref: TAO:0009305 is_a: ZFA:0009162 ! extracellular matrix secreting cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009306 name: neuroepithelial cell namespace: zebrafish_anatomy subset: cell_slim synonym: "neuroepithelial cells" EXACT PLURAL [] xref: CL:0000710 xref: TAO:0009306 is_a: ZFA:0009000 ! cell relationship: develops_from ZFA:0009080 ! neurectodermal cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009307 name: somatic stem cell namespace: zebrafish_anatomy def: "A stem cell that can give rise to cell types of the body other than those of the germ-line." [GO:CJM] comment: Definition originally referred to GO:0048103. Changed to GOC: CJM to match other references. subset: cell_slim synonym: "somatic stem cells" EXACT PLURAL [] xref: CL:0000723 xref: TAO:0009307 is_a: ZFA:0009000 ! cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009308 name: urothelial cell namespace: zebrafish_anatomy def: "A cell of a layer of transitional epithelium in the wall of the bladder, ureter, and renal pelvis, external to the lamina propria." [CL:curator] subset: cell_slim synonym: "urothelial cells" EXACT PLURAL [] xref: CL:0000731 xref: TAO:0009308 is_a: ZFA:0009034 ! epithelial cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009309 name: leukocyte namespace: zebrafish_anatomy def: "An achromatic cell of the myeloid or lymphoid lineages, found in blood or other tissue." [CL:curator] subset: cell_slim synonym: "immune cell" EXACT [] synonym: "leucocyte" EXACT [] synonym: "white blood cell" EXACT [] xref: CL:0000738 xref: TAO:0009309 is_a: ZFA:0005830 ! hematopoietic cell is_a: ZFA:0009136 ! motile cell relationship: develops_from ZFA:0009014 ! hematopoietic stem cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001159 ! immune system relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009310 name: retinal ganglion cell namespace: zebrafish_anatomy def: "The set of neurons that receives neural inputs via bipolar, horizontal and amacrine cells. The axons of these cells make up the optic nerve." [CL:curator] subset: cell_slim synonym: "gangliocyte" EXACT [] synonym: "RGC" EXACT [] xref: CL:0000740 xref: TAO:0009310 is_a: ZFA:0009067 ! CNS neuron (sensu Vertebrata) relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000024 ! retinal ganglion cell layer relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009311 name: spinal accessory motor neuron namespace: zebrafish_anatomy def: "A motor neuron that is located in the cervical region of the spinal cord and selectively innervates the sternocleidmastoid or trapezius muscle. Unlike other motor neurons, they extend axons dorsally along lateral margins of the spinal cord." [CL:curator] subset: cell_slim synonym: "SACMN" EXACT [] xref: CL:0000741 xref: TAO:0009311 is_a: ZFA:0009052 ! motor neuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009312 name: periarticular chondrocyte namespace: zebrafish_anatomy def: "A round chondrocyte that first differentiates in the late embryonic growth plate of bone." [CL:curator] subset: cell_slim synonym: "periarticular chondrocytes" EXACT PLURAL [] xref: CL:0000742 xref: TAO:0009312 is_a: ZFA:0009084 ! chondrocyte relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009313 name: hypertrophic chondrocyte namespace: zebrafish_anatomy def: "A terminally differentiated chondrocyte that differentiates in the late embryonic growth plate of bone." [CL:curator] subset: cell_slim synonym: "hypertrophic chondrocytes" EXACT PLURAL [] xref: CL:0000743 xref: TAO:0009313 is_a: ZFA:0009084 ! chondrocyte relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009314 name: columnar chondrocyte namespace: zebrafish_anatomy def: "A columnar chondrocyte that differentiates in the late embryonic growth plate of bone. Columnar chondrocytes vigorously proliferate and form columns in the growth plate." [CL:curator] subset: cell_slim synonym: "columnar chondrocytes" EXACT PLURAL [] xref: CL:0000744 xref: TAO:0009314 is_a: ZFA:0009084 ! chondrocyte relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009315 name: horizontal cell namespace: zebrafish_anatomy def: "A neuron that laterally connects other neurons in the inner nuclear layer of the retina." [ZFIN:ZDB-PUB-070221-6] subset: cell_slim synonym: "horizontal cells" EXACT PLURAL [] xref: CL:0000745 xref: TAO:0009315 is_a: ZFA:0009051 ! interneuron relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000119 ! retinal inner nuclear layer relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009316 name: cardiac muscle cell namespace: zebrafish_anatomy subset: cell_slim synonym: "cardiac muscle cells" EXACT PLURAL [] synonym: "cardiac myocyte" EXACT [] synonym: "cardiomyocyte" EXACT [] xref: CL:0000746 xref: TAO:0009316 is_a: ZFA:0005784 ! striated muscle cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001319 ! myocardium relationship: part_of ZFA:0005280 ! cardiac muscle relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009317 name: cyanophore namespace: zebrafish_anatomy def: "A pigment cell derived from the neural crest. Contains blue pigment of unknown chemical composition in fibrous organelles termed cyanosomes. This gives a blue appearance." [CL:curator] subset: cell_slim synonym: "blue chromatophore" EXACT [] xref: CL:0000747 xref: TAO:0009317 is_a: ZFA:0009090 ! pigment cell relationship: develops_from ZFA:0005332 ! cyanoblast relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000368 ! integument relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009318 name: retinal bipolar neuron namespace: zebrafish_anatomy def: "A bipolar neuron found in the retina and having connections with photoreceptors cells and neurons in the inner plexiform layer." [CL:curator] subset: cell_slim xref: CL:0000748 xref: TAO:0009318 is_a: ZFA:0009055 ! bipolar neuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009319 name: ON-bipolar cell namespace: zebrafish_anatomy def: "A bipolar neuron found in the retina and having connections with photoreceptors cells and neurons in the inner half of the inner plexiform layer. These cells depolarize in response to light stimulation of their corresponding photoreceptors." [CL:curator] subset: cell_slim synonym: "ON-bipolar cells" EXACT PLURAL [] xref: CL:0000749 xref: TAO:0009319 is_a: ZFA:0009318 ! retinal bipolar neuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009320 name: OFF-bipolar cell namespace: zebrafish_anatomy def: "A bipolar neuron found in the retina and having connections with photoreceptors cells and neurons in the outer half of the inner plexiform layer. These cells hyperpolarize in response to light stimulation of their corresponding photoreceptors." [CL:curator] subset: cell_slim synonym: "OFF-bipolar cells" EXACT PLURAL [] xref: CL:0000750 xref: TAO:0009320 is_a: ZFA:0009318 ! retinal bipolar neuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009321 name: rod bipolar cell namespace: zebrafish_anatomy def: "A bipolar neuron found in the retina and having connections with rod photoreceptor cells and neurons in the inner plexiform layer." [CL:curator] subset: cell_slim synonym: "rod bipolar cells" EXACT PLURAL [] xref: CL:0000751 xref: TAO:0009321 is_a: ZFA:0009319 ! ON-bipolar cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009322 name: cone retinal bipolar cell namespace: zebrafish_anatomy def: "A bipolar neuron found in the retina and having connections with cone photoreceptor cells and neurons in the inner plexiform layer." [CL:curator] subset: cell_slim synonym: "cone retinal bipolar cells" EXACT PLURAL [] xref: CL:0000752 xref: TAO:0009322 is_a: ZFA:0009318 ! retinal bipolar neuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009323 name: thrombocyte namespace: zebrafish_anatomy def: "A nucleated blood cell involved in coagulation, typically seen in birds and other non-mammalian vertebrates." [CL:curator] comment: Note that this is a non-mammalian cell type. Use platelet ; CL:0000233 for thrombocytes (platelets) in mammals. subset: cell_slim synonym: "thrombocytes" EXACT PLURAL [] xref: CL:0000762 xref: TAO:0009323 is_a: ZFA:0009044 ! blood cell is_a: ZFA:0009324 ! myeloid cell relationship: develops_from ZFA:0009351 ! thromboblast relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009324 name: myeloid cell namespace: zebrafish_anatomy def: "A cell of the monocyte, granulocyte, mast cell, megakaryocyte, or erythroid lineage." [CL:curator] subset: cell_slim synonym: "myeloid cells" EXACT PLURAL [] xref: CL:0000763 xref: TAO:0009324 is_a: ZFA:0005830 ! hematopoietic cell relationship: develops_from ZFA:0009021 ! common myeloid progenitor relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009325 name: erythroid lineage cell namespace: zebrafish_anatomy def: "A immature or mature cell in the lineage leading to and including erythrocytes." [CL:curator] subset: cell_slim synonym: "erythroid lineage cells" EXACT PLURAL [] xref: CL:0000764 xref: TAO:0009325 is_a: ZFA:0009324 ! myeloid cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009326 name: myeloid leukocyte namespace: zebrafish_anatomy def: "A cell of the monocyte, granulocyte, or mast cell lineage." [CL:curator] subset: cell_slim synonym: "myeloid leukocytes" EXACT PLURAL [] xref: CL:0000766 xref: TAO:0009326 is_a: ZFA:0009309 ! leukocyte is_a: ZFA:0009324 ! myeloid cell relationship: develops_from ZFA:0009021 ! common myeloid progenitor relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009327 name: neutrophil namespace: zebrafish_anatomy def: "Any of the immature or mature forms of a granular leukocyte that in its mature form has a nucleus with three to five lobes connected by slender threads of chromatin, and cytoplasm containing fine inconspicuous granules and stainable by neutral dyes." [ZFIN:ZDB-PUB-070221-1] subset: cell_slim synonym: "neutrocyte" EXACT [] synonym: "neutrophil leucocyte" EXACT [] synonym: "neutrophil leukocyte" EXACT [] synonym: "neutrophilic leucocyte" EXACT [] synonym: "neutrophilic leukocyte" EXACT [] synonym: "PMN" RELATED [] synonym: "polymorphonuclear leucocyte" RELATED [] synonym: "polymorphonuclear leukocyte" RELATED [] synonym: "polymorphonuclear neutrophil" RELATED [] synonym: "polynuclear neutrophilic leucocyte" RELATED [] synonym: "polynuclear neutrophilic leukocyte" RELATED [] xref: CL:0000775 xref: TAO:0009327 is_a: ZFA:0009048 ! granulocyte relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009328 name: immature neutrophil namespace: zebrafish_anatomy def: "Any of the immature forms of a neutrophil in which neutrophilic specific granules are present but other phenotypic features of the mature form may be lacking. A neutrophil is a granular leukocyte that in its mature form has a nucleus with three to five lobes connected by slender threads of chromatin, and cytoplasm containing fine inconspicuous granules and stainable by neutral dyes." [ZFIN:ZDB-PUB-070221-1] subset: cell_slim synonym: "immature neutrocyte" EXACT [] synonym: "immature neutrophil leucocyte" EXACT [] synonym: "immature neutrophil leukocyte" EXACT [] synonym: "immature neutrophilic leucocyte" EXACT [] xref: CL:0000776 xref: TAO:0009328 is_a: ZFA:0009327 ! neutrophil relationship: develops_from ZFA:0009257 ! neutrophilic promyelocyte relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009329 name: mononuclear osteoclast namespace: zebrafish_anatomy def: "A specialized mononuclear osteoclast associated with the absorption and removal of bone, precursor of multinuclear osteoclasts." [CL:curator] subset: cell_slim synonym: "mononuclear osteoclasts" EXACT PLURAL [] xref: CL:0000778 xref: TAO:0009329 is_a: ZFA:0009047 ! osteoclast is_a: ZFA:0009064 ! mononuclear phagocyte relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009330 name: mononuclear odontoclast namespace: zebrafish_anatomy def: "A specialized mononuclear osteoclast associated with the absorption and removal of cementum." [CL:curator] subset: cell_slim synonym: "mononuclear odontoclasts" EXACT PLURAL [] xref: CL:0000781 xref: TAO:0009330 is_a: ZFA:0009270 ! odontoclast is_a: ZFA:0009329 ! mononuclear osteoclast relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009331 name: mature B cell namespace: zebrafish_anatomy def: "A B cell that is mature, having left the bone marrow. Initially, these cells are IgM-positive and IgD-positive, and they can be activated by antigen." [ZFIN:ZDB-PUB-070221-3] subset: cell_slim synonym: "mature B lymphocyte" EXACT [] synonym: "mature B-cell" EXACT [] synonym: "mature B-lymphocyte" EXACT [] xref: CL:0000785 xref: TAO:0009331 is_a: ZFA:0009088 ! professional antigen presenting cell is_a: ZFA:0009142 ! B cell relationship: develops_from ZFA:0009343 ! immature B cell relationship: develops_from ZFA:0009345 ! transitional stage B cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009332 name: plasma cell namespace: zebrafish_anatomy def: "A terminally differentiated, post-mitotic, antibody secreting cell of the B cell lineage with the phenotype CD138-positive, surface immunonoglobulin-negative, and MHC Class II-negative. Plasma cells are oval or round with extensive rough endoplasmic reticulum, a well-developed Golgi apparatus, and a round nucleus having a characteristic cartwheel heterochromatin pattern and are devoted to producing large amounts of immunoglobulin." [ZFIN:ZDB-PUB-070221-1, ZFIN:ZDB-PUB-070221-3] subset: cell_slim synonym: "plasmacyte" EXACT [] xref: CL:0000786 xref: TAO:0009332 is_a: ZFA:0009250 ! lymphocyte relationship: develops_from ZFA:0009331 ! mature B cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009333 name: memory B cell namespace: zebrafish_anatomy def: "A memory B cell is a mature B cell that is long-lived, readily activated upon re-encounter of its antigenic determinant, and has been selected for expression of higher affinity immunoglobulin. This cell type has the phenotype CD19-positive, CD20-positive, MHC Class II-positive, and CD138-negative." [ZFIN:ZDB-PUB-070221-3] subset: cell_slim synonym: "memory B lymphocyte" EXACT [] synonym: "memory B-cell" EXACT [] synonym: "memory B-lymphocyte" EXACT [] xref: CL:0000787 xref: TAO:0009333 is_a: ZFA:0009331 ! mature B cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009334 name: naive B cell namespace: zebrafish_anatomy def: "A naive B cell is a mature B cell that has the phenotype surface IgD-positive, surface IgM-positive, CD27-negative, and CD38-negative, and that has not yet been activated by antigen in the periphery." [CL:curator, IBSN:0781765196] subset: cell_slim synonym: "naive B lymphocyte" EXACT [] synonym: "naive B-cell" EXACT [] synonym: "naive B-lymphocyte" EXACT [] xref: CL:0000788 xref: TAO:0009334 is_a: ZFA:0009331 ! mature B cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009335 name: alpha-beta T cell namespace: zebrafish_anatomy def: "A T cell that expresses an alpha-beta T cell receptor complex." [ZFIN:ZDB-PUB-070221-3] subset: cell_slim synonym: "alpha-beta T lymphocyte" EXACT [] synonym: "alpha-beta T-cell" EXACT [] synonym: "alpha-beta T-lymphocyte" EXACT [] xref: CL:0000789 xref: TAO:0009335 is_a: ZFA:0009046 ! T cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009336 name: gamma-delta T cell namespace: zebrafish_anatomy def: "A T cell that expresses a gamma-delta T cell receptor complex." [ZFIN:ZDB-PUB-070221-3] comment: Note that gamma-delta T cell have both thymic and extrathymic differentiation pathways. subset: cell_slim synonym: "gamma-delta T lymphocyte" EXACT [] synonym: "gamma-delta T-cell" EXACT [] synonym: "gamma-delta T-lymphocyte" EXACT [] xref: CL:0000798 xref: TAO:0009336 is_a: ZFA:0009046 ! T cell relationship: develops_from ZFA:0009350 ! pro-T cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009337 name: immature gamma-delta T cell namespace: zebrafish_anatomy def: "A gamma-delta T cell that has an immature phenotype." [ZFIN:ZDB-PUB-070221-3] comment: Note that gamma-delta T cell have both thymic and extrathymic differentiation pathways. subset: cell_slim synonym: "immature gamma-delta T lymphocyte" EXACT [] synonym: "immature gamma-delta T-cell" EXACT [] synonym: "immature gamma-delta T-lymphocyte" EXACT [] xref: CL:0000799 xref: TAO:0009337 is_a: ZFA:0009336 ! gamma-delta T cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009338 name: mature gamma-delta T cell namespace: zebrafish_anatomy def: "A gamma-delta T cell that has a mature phenotype. These cells can be found in tissues and circulation where they express unique TCR repertoire depending on their location." [ZFIN:ZDB-PUB-070221-3] subset: cell_slim synonym: "mature gamma-delta T lymphocyte" EXACT [] synonym: "mature gamma-delta T-cell" EXACT [] synonym: "mature gamma-delta T-lymphocyte" EXACT [] xref: CL:0000800 xref: TAO:0009338 is_a: ZFA:0009336 ! gamma-delta T cell relationship: develops_from ZFA:0009337 ! immature gamma-delta T cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009339 name: gamma-delta intraepithelial T cell namespace: zebrafish_anatomy def: "A gamma-delta T cell of the columnar epithelium of the gastrointestinal tract. Intraepithelial T cells often have distinct developmental pathways and activation requirements." [ZFIN:ZDB-PUB-070221-3] subset: cell_slim synonym: "gamma-delta intraepithelial T lymphocyte" EXACT [] synonym: "gamma-delta intraepithelial T-cell" EXACT [] synonym: "gamma-delta intraepithelial T-lymphocyte" EXACT [] synonym: "IEL" RELATED [] synonym: "intraepithelial lymphocyte" RELATED [] xref: CL:0000801 xref: TAO:0009339 is_a: ZFA:0009338 ! mature gamma-delta T cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009342 name: memory T cell namespace: zebrafish_anatomy def: "A distinctly differentiated long-lived T cell that has the phenotype CD45RO-positive and CD127-positive." [ZFIN:ZDB-PUB-070221-3] subset: cell_slim synonym: "memory T lymphocyte" EXACT [] synonym: "memory T-cell" EXACT [] synonym: "memory T-lymphocyte" EXACT [] xref: CL:0000813 xref: TAO:0009342 is_a: ZFA:0009046 ! T cell relationship: develops_from ZFA:0009046 ! T cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009343 name: immature B cell namespace: zebrafish_anatomy def: "An immature B cell is a precursor B cell that has the phenotype surface IgM-positive and surface IgD-negative, and have not undergone class immunoglobulin class switching or peripheral encounter with antigen and activation." [ZFIN:ZDB-PUB-070221-3] subset: cell_slim synonym: "immature B lymphocyte" EXACT [] synonym: "immature B-cell" EXACT [] synonym: "immature B-lymphocyte" EXACT [] synonym: "newly formed B Cell" EXACT [ZFIN:ZDB-PUB-070221-3] xref: CL:0000816 xref: TAO:0009343 is_a: ZFA:0009344 ! precursor B cell relationship: develops_from ZFA:0009349 ! pro-B cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009344 name: precursor B cell namespace: zebrafish_anatomy def: "A precursor B cell is a B cell with the phenotype CD10-positive." [ZFIN:ZDB-PUB-070221-3] subset: cell_slim synonym: "pre-B lymphocyte" EXACT [] xref: CL:0000817 xref: TAO:0009344 is_a: ZFA:0009142 ! B cell relationship: develops_from ZFA:0009349 ! pro-B cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009345 name: transitional stage B cell namespace: zebrafish_anatomy def: "An immature B cell of an intermediate stage between the pre-B cell stage and the mature nave stage. Transitional B cells express surface immunoglobulin, and are subject to the process of B cell selection." [ZFIN:ZDB-PUB-070221-3] subset: cell_slim synonym: "T1 B cell" RELATED [] synonym: "T2 B cell" RELATED [] synonym: "T3 B cell" RELATED [] synonym: "transitional stage B lymphocyte" EXACT [] synonym: "transitional stage B-cell" EXACT [] synonym: "transitional stage B-lymphocyte" EXACT [] xref: CL:0000818 xref: TAO:0009345 is_a: ZFA:0009142 ! B cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009346 name: immature natural killer cell namespace: zebrafish_anatomy def: "A natural killer cell that is developmentally immature, has the phenotype CD34-negative, CD117-positive, CD122-positive, and CD161-positive, and expresses additional natural killer cell receptors (NKR)." [ZFIN:ZDB-PUB-070221-3] subset: cell_slim synonym: "immature NK cell " EXACT [] synonym: "p-NK" RELATED [] xref: CL:0000823 xref: TAO:0009346 is_a: ZFA:0009278 ! natural killer cell relationship: develops_from ZFA:0009348 ! pro-NK cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009347 name: mature natural killer cell namespace: zebrafish_anatomy def: "A natural killer cell that is developmentally mature, has the phenotype CD16-positive, and expresses a variety of inhibitory and activating receptors that recognize NHC class I and other stress related molecules." [ZFIN:ZDB-PUB-070221-3] subset: cell_slim synonym: "LAK cell" RELATED [] synonym: "lymphokine activated killer cell" RELATED [] synonym: "mature NK cell" EXACT [] xref: CL:0000824 xref: TAO:0009347 is_a: ZFA:0009278 ! natural killer cell relationship: develops_from ZFA:0009346 ! immature natural killer cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009348 name: pro-NK cell namespace: zebrafish_anatomy def: "A progenitor committed to the natural killer cell lineage, expressing certain phenotypic markers of the natural killer cell lineage such as the IL-15 receptor, but lacking many of the phenotypic characteristics of later stages of natural killer cell development such as expression of NK activating and inhibitory molecules." [CL:curator] subset: cell_slim synonym: "natural killer cell progenitor" EXACT [] synonym: "NKP" EXACT [] synonym: "null cell" RELATED [] synonym: "preNK cell" RELATED [] synonym: "pro-natural killer cell" EXACT [] xref: CL:0000825 xref: TAO:0009348 is_a: ZFA:0009355 ! lymphoid progenitor cell relationship: develops_from ZFA:0009023 ! common lymphoid progenitor relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009349 name: pro-B cell namespace: zebrafish_anatomy def: "A progenitor cell of the B cell lineage, with some lineage specific activity such as early stages of recombination of B cell receptor genes, but not yet fully committed to the B cell lineage until the expression of PAX5 occurs." [ZFIN:ZDB-PUB-070221-3] subset: cell_slim synonym: "pro-B lymphocyte" EXACT [] synonym: "pro-B-cell" EXACT [] synonym: "pro-B-lymphocyte" EXACT [] synonym: "progenitor B cell" EXACT [] xref: CL:0000826 xref: TAO:0009349 is_a: ZFA:0009355 ! lymphoid progenitor cell relationship: develops_from ZFA:0009023 ! common lymphoid progenitor relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009350 name: pro-T cell namespace: zebrafish_anatomy def: "A progenitor cell of the T cell lineage, with some lineage specific marker expression, but not yet fully committed to the T cell lineage." [ZFIN:ZDB-PUB-070221-3] subset: cell_slim synonym: "DN1 cell" RELATED [] synonym: "DN1 thymocyte" RELATED [] synonym: "pro-T lymphocyte" EXACT [] synonym: "TN1 cell" RELATED [] xref: CL:0000827 xref: TAO:0009350 is_a: ZFA:0009355 ! lymphoid progenitor cell relationship: develops_from ZFA:0009023 ! common lymphoid progenitor relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001078 ! thymus relationship: start ZFS:0000035 ! Larval:Protruding-mouth [Term] id: ZFA:0009351 name: thromboblast namespace: zebrafish_anatomy def: "A progenitor cell of the thrombocyte, a nucleated blood cell involved in coagulation typically seen in birds and other non-mammalian vertebrates." [CL:curator] comment: Note that this is a non-mammalian cell type. subset: cell_slim synonym: "thromboblasts" EXACT PLURAL [] xref: CL:0000828 xref: TAO:0009351 is_a: ZFA:0009356 ! myeloid lineage restricted progenitor cell relationship: develops_from ZFA:0009022 ! megakaryocyte erythroid progenitor cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009352 name: neutrophil progenitor cell namespace: zebrafish_anatomy def: "A progenitor cell of the neutrophil lineage." [ZFIN:ZDB-PUB-070221-1] subset: cell_slim synonym: "neutrophil stem cell" RELATED [] xref: CL:0000834 xref: TAO:0009352 is_a: ZFA:0009356 ! myeloid lineage restricted progenitor cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009353 name: myeloblast namespace: zebrafish_anatomy def: "The most primitive precursor in the granulocytic series, having fine, evenly distributed chromatin, several nucleoli, and a nongranular basophilic cytoplasm." [ZFIN:ZDB-PUB-070221-1] subset: cell_slim synonym: "myeloblasts" EXACT PLURAL [] xref: CL:0000835 xref: TAO:0009353 is_a: ZFA:0009356 ! myeloid lineage restricted progenitor cell relationship: develops_from ZFA:0009251 ! granulocyte monocyte progenitor cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009354 name: hematopoietic multipotent progenitor cell namespace: zebrafish_anatomy def: "A hematopoietic multipotent progenitor cell is multipotent, but not capable of long-term self-renewal. These cells are characterized as lacking lineage cell surface markers and being CD34-positive in both mice and humans." [CL:curator, PMID:19022770] comment: Note that this is a class of cell types, not an identified single cell type. subset: cell_slim synonym: "hematopoietic progenitor cell" EXACT [] synonym: "hemopoietic progenitor cell" EXACT [] xref: CL:0000837 xref: TAO:0009354 is_a: ZFA:0005830 ! hematopoietic cell relationship: develops_from ZFA:0009014 ! hematopoietic stem cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009355 name: lymphoid progenitor cell namespace: zebrafish_anatomy def: "A progenitor cell restricted to the lymphoid lineage." [CL:curator, PMID:19022770] comment: Note that this is a class of cell types, not an identified single cell type. subset: cell_slim synonym: "lymphoid progenitor cells" EXACT PLURAL [] xref: CL:0000838 xref: TAO:0009355 is_a: ZFA:0005830 ! hematopoietic cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009356 name: myeloid lineage restricted progenitor cell namespace: zebrafish_anatomy def: "A progenitor cell restricted to the myeloid lineage." [CL:curator, PMID:19022770] comment: Note that this is a class of cell types, not an identified single cell type. subset: cell_slim synonym: "myeloid progenitor cell" RELATED [] synonym: "myeloid progenitor cells" EXACT PLURAL [] xref: CL:0000839 xref: TAO:0009356 is_a: ZFA:0005830 ! hematopoietic cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009357 name: mononuclear cell namespace: zebrafish_anatomy def: "A leukocyte with a single non-segmented nucleus in the mature form." [CL:curator] subset: cell_slim synonym: "mononuclear cells" EXACT PLURAL [] xref: CL:0000842 xref: TAO:0009357 is_a: ZFA:0009309 ! leukocyte relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009358 name: ciliated olfactory receptor neuron namespace: zebrafish_anatomy def: "An olfactory receptor cell in which the apical ending of the dendrite is a pronounced ciliated olfactory knob. The soma is located basally in the olfactory epithelium." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-060724-7, ZFIN:ZDB-PUB-140416-5] subset: cell_slim synonym: "ciliated olfactory sensory neuron" EXACT [] synonym: "ciliated sensory neuron" EXACT [] xref: CL:0000847 xref: TAO:0009358 is_a: ZFA:0009125 ! olfactory receptor cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009359 name: microvillous olfactory receptor neuron namespace: zebrafish_anatomy def: "An olfactory receptor cell in which the apical ending of the dendrite is a knob that bears numerous microvilli. The cell body is plump and the soma is at an intermediate position in the olfactory epithelium." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-060724-7, ZFIN:ZDB-PUB-140416-5] subset: cell_slim synonym: "microvillous olfactory sensory neuron" EXACT [] synonym: "microvillous sensory neuron" RELATED [] xref: CL:0000848 xref: TAO:0009359 is_a: ZFA:0009125 ! olfactory receptor cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009360 name: crypt olfactory receptor neuron namespace: zebrafish_anatomy def: "An olfactory receptor cell with short cilia growing in an invagination bordered by microvilli. The soma is large and globose located in the apical region of the olfactory epithelium. The axons project to a single glomerulus mdG2." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-060724-7, ZFIN:ZDB-PUB-130710-55, ZFIN:ZDB-PUB-140416-5] subset: cell_slim synonym: "crypt cell" EXACT [] synonym: "crypt olfactory sensory neuron" EXACT [] synonym: "crypt sensory neuron" EXACT [] xref: CL:0000849 xref: TAO:0009360 is_a: ZFA:0009125 ! olfactory receptor cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009361 name: serotonergic neuron namespace: zebrafish_anatomy alt_id: ZFA:0009192 def: "A neuron that releases serotonin as a neurotransmitter." [CL:curator] comment: Has alternate ID CL:0000403. subset: cell_slim synonym: "5-HT neuron" EXACT [] synonym: "5-hydroxytryptamine neuron" EXACT [] synonym: "serotinergic neuron" RELATED [] synonym: "serotinergic neurons" RELATED [] xref: CL:0000850 xref: TAO:0009192 xref: TAO:0009361 is_a: ZFA:0009248 ! neuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009362 name: neuromast mantle cell namespace: zebrafish_anatomy def: "Neuromast mantle cell is a non-sensory cell. Neuromast mantle cells surround the neuromast support cells and neuromast hair cells, separating the neuromast from the epidermis, and secrete cupula in which the ciliary bundles of all the hair cells are embedded." [ZFIN:ZDB-PUB-070221-7] subset: cell_slim synonym: "neuromast mantle cells" EXACT PLURAL [] xref: CL:0000851 xref: TAO:0009362 is_a: ZFA:0009000 ! cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000243 ! neuromast relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0009363 name: neuromast support cell namespace: zebrafish_anatomy def: "Neuromast support cell is a non-sensory cell of the neuromast that extend between the sensory hair cells from the basement membrane to the apical surface; neuromast support cells are surrounded by neuromast mantle cells." [ZFIN:ZDB-PUB-070221-7] subset: cell_slim synonym: "neuromast support cells" EXACT PLURAL [] xref: CL:0000852 xref: TAO:0009363 is_a: ZFA:0009000 ! cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000243 ! neuromast relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0009364 name: olfactory epithelial support cell namespace: zebrafish_anatomy def: "Olfactory epithelial support cell is a non ciliated columnar cell that extends from the epithelial free margin to the basement membrane of the olfactory epithelium." [CL:curator] subset: cell_slim synonym: "olfactory sustentacular cell" EXACT [] xref: CL:0000853 xref: TAO:0009364 is_a: ZFA:0009000 ! cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009365 name: interneuromast cell namespace: zebrafish_anatomy def: "Interneuromast cell is a neuroectodermal cell deposited by the migrating lateral line primordium between the neuromasts. Interneuromast cells proliferate and migrate to form additional neuromasts." [CL:curator] subset: cell_slim synonym: "interneuromast cells" EXACT PLURAL [] xref: CL:0000854 xref: TAO:0009365 is_a: ZFA:0009080 ! neurectodermal cell relationship: develops_from ZFA:0009012 ! neuroplacodal cell relationship: end ZFS:0000000 ! Unknown relationship: part_of ZFA:0000034 ! lateral line system relationship: start ZFS:0000029 ! Pharyngula:Prim-5 [Term] id: ZFA:0009366 name: hair cell namespace: zebrafish_anatomy def: "Hair cell is a mechanoreceptor cell that is sensitive to movement of the hair-like projections (stereocilia and kinocilia) which relay the information centrally in the nervous system." [CL:curator] subset: cell_slim synonym: "hair cells" EXACT PLURAL [] xref: CL:0000855 xref: TAO:0009366 is_a: ZFA:0009120 ! mechanoreceptor cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009367 name: neuromast hair cell namespace: zebrafish_anatomy def: "Neuromast hair cell is a hair cell that acts as a sensory receptor of the neuromast; it is morphologically polarized as a result of the relative position of the single kinocilium and the clusters of stereocilia on its apical surface." [CL:curator] subset: cell_slim synonym: "neuromast hair cells" EXACT PLURAL [] xref: CL:0000856 xref: TAO:0009367 is_a: ZFA:0009366 ! hair cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000243 ! neuromast relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009368 name: slow muscle myoblast namespace: zebrafish_anatomy def: "A skeletal muscle myoblast that differentiates into slow muscle fibers." [CL:curator] subset: cell_slim synonym: "slow muscle myoblasts" EXACT PLURAL [] xref: CL:0000857 xref: TAO:0009368 is_a: ZFA:0009236 ! skeletal muscle myoblast relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009369 name: fast muscle myoblast namespace: zebrafish_anatomy def: "A skeletal muscle myoblast that differentiates into fast muscle fibers." [CL:curator] subset: cell_slim synonym: "fast muscle myoblasts" EXACT PLURAL [] xref: CL:0000858 xref: TAO:0009369 is_a: ZFA:0009236 ! skeletal muscle myoblast relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009370 name: stretch receptor cell namespace: zebrafish_anatomy subset: cell_slim synonym: "stretch receptor cells" EXACT PLURAL [] xref: CL:1000082 xref: TAO:0009370 is_a: ZFA:0009001 ! receptor cell (sensu Animalia) relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009371 name: stratified keratinized epithelial stem cell namespace: zebrafish_anatomy subset: cell_slim synonym: "stratified keratinized epithelial stem cells" EXACT PLURAL [] xref: CL:1000083 xref: TAO:0009371 is_a: ZFA:0009180 ! stratified epithelial stem cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009372 name: duct epithelial cell namespace: zebrafish_anatomy def: "Epithelial cell part of duct." [GOC:cvs, ORCiD:0000-0002-2244-7917] comment: Definition not present in CL. subset: cell_slim xref: CL:0000068 is_a: ZFA:0009034 ! epithelial cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005171 ! duct relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-07-29T05:17:20Z [Term] id: ZFA:0009374 name: kidney epithelial cell namespace: zebrafish_anatomy def: "An epithelial cell of the kidney." [GOC:tfm, KUPO:SJ] subset: cell_slim xref: CL:0002518 is_a: ZFA:0009034 ! epithelial cell is_a: ZFA:0009389 ! kidney cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009375 name: renal intercalated cell namespace: zebrafish_anatomy def: "A cuboidal epithelial cell of the kidney that regulates acid/base balance." [CL:CVS] subset: cell_slim synonym: "intercalated cell" EXACT [] xref: CL:0005010 is_a: ZFA:0009038 ! columnar/cuboidal epithelial cell is_a: ZFA:0009374 ! kidney epithelial cell is_a: ZFA:0009388 ! meso-epithelial cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-03-06T01:42:07Z [Term] id: ZFA:0009376 name: renal alpha-intercalated cell namespace: zebrafish_anatomy def: "A cuboidal epithelial cell of the kidney which secretes acid and reabsorbs base to regulate acid/base balance." [CL:CVS] subset: cell_slim xref: CL:0005011 is_a: ZFA:0009375 ! renal intercalated cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-03-06T01:42:03Z [Term] id: ZFA:0009379 name: intrahepatic bile duct epithelial cell namespace: zebrafish_anatomy def: "An epithelial cell of the intrahepatic portion of the bile duct." [GOC:tfm] subset: cell_slim xref: CL:0002538 is_a: ZFA:0009372 ! duct epithelial cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0005169 ! intrahepatic bile duct relationship: start ZFS:0000035 ! Larval:Protruding-mouth created_by: Ceri creation_date: 2013-07-29T05:21:19Z [Term] id: ZFA:0009380 name: pancreatic ductal cell namespace: zebrafish_anatomy def: "Epithelial cell found in the ducts of the pancreas." [GOC:tfm] subset: cell_slim xref: CL:0002079 is_a: ZFA:0009372 ! duct epithelial cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001372 ! pancreatic duct relationship: start ZFS:0000032 ! Pharyngula:High-pec created_by: Ceri creation_date: 2013-07-29T05:23:07Z [Term] id: ZFA:0009383 name: endo-epithelial cell namespace: zebrafish_anatomy def: "An epithelial cell derived from endoderm." [GOC:tfm] subset: cell_slim xref: CL:0002076 is_a: ZFA:0009034 ! epithelial cell relationship: develops_from ZFA:0000017 ! endoderm relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-08-02T04:25:16Z [Term] id: ZFA:0009384 name: neurecto-epithelial cell namespace: zebrafish_anatomy def: "Epithelial cells derived from neural plate and neural crest." [GOC:tfm] comment: The term "neuroepithelial cell" is used to describe both this cell type and sensory epithelial cell (CL:0000098). subset: cell_slim synonym: "neuroepithelial cell" BROAD [] xref: CL:0000710 is_a: ZFA:0009038 ! columnar/cuboidal epithelial cell is_a: ZFA:0009385 ! ecto-epithelial cell relationship: develops_from ZFA:0009080 ! neurectodermal cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009385 name: ecto-epithelial cell namespace: zebrafish_anatomy def: "An epithelial cell derived from ectoderm." [FMA:69074] subset: cell_slim xref: CL:0002077 is_a: ZFA:0009034 ! epithelial cell is_a: ZFA:0009386 ! somatic cell relationship: develops_from ZFA:0009137 ! ectodermal cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009386 name: somatic cell namespace: zebrafish_anatomy def: "A cell of an organism that does not pass on its genetic material to the organism's offspring (i.e. a non-germ line cell)." [GOC:tfm, ISBN:0721662544] subset: cell_slim xref: CL:0002371 is_a: ZFA:0009000 ! cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009387 name: supportive cell namespace: zebrafish_anatomy def: "A cell whose primary function is to support other cell types." [FB:ma, GOC:tfm] subset: cell_slim xref: CL:0000630 is_a: ZFA:0009000 ! cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009388 name: meso-epithelial cell namespace: zebrafish_anatomy def: "Epithelial cell derived from mesoderm or mesenchyme." [FMA:69076, GOC:tfm] subset: cell_slim synonym: "epithelial mesenchymal cell" EXACT [] xref: CL:0002078 is_a: ZFA:0009034 ! epithelial cell is_a: ZFA:0009386 ! somatic cell relationship: develops_from ZFA:0009138 ! mesodermal cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009389 name: kidney cell namespace: zebrafish_anatomy def: "Cell that is part of the kidney." [GOC:cvs, ORCiD:0000-0002-2244-7917] subset: cell_slim xref: CL:1000497 is_a: ZFA:0009386 ! somatic cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000529 ! kidney relationship: start ZFS:0000037 ! Larval:Day 5 [Term] id: ZFA:0009390 name: kidney interstitial cell namespace: zebrafish_anatomy subset: cell_slim xref: CL:1000500 is_a: ZFA:0009389 ! kidney cell is_a: ZFA:0009392 ! connective tissue cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009391 name: kidney medulla cell namespace: zebrafish_anatomy subset: cell_slim xref: CL:1000504 is_a: ZFA:0009389 ! kidney cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009392 name: connective tissue cell namespace: zebrafish_anatomy def: "A cell of the supporting or framework tissue of the body, arising chiefly from the embryonic mesoderm and including adipose tissue, cartilage, and bone." [GOC:tfm, ISBN:0618947256] subset: cell_slim xref: CL:0002320 is_a: ZFA:0009386 ! somatic cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009393 name: lymphangioblast namespace: zebrafish_anatomy def: "Lymphatic progenitor cells." [CL:CVS] comment: Usually express Prox1, or prox1b. subset: cell_slim xref: CL:0005020 is_a: ZFA:0009020 ! multi fate stem cell relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2012-01-12T04:44:34Z [Term] id: ZFA:0009394 name: mesenchymal lymphangioblast namespace: zebrafish_anatomy def: "Mesenchymal derived lymphatic progenitor cells that give rise to the superficial lymphatics." [PMID:15624319, PMID:18430230] subset: cell_slim xref: CL:0005021 is_a: ZFA:0009081 ! mesenchymal cell is_a: ZFA:0009393 ! lymphangioblast relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2012-01-12T05:01:22Z [Term] id: ZFA:0009395 name: vascular lymphangioblast namespace: zebrafish_anatomy def: "Lymphatic progenitor cells, derived from the veins, that give rise to lymphatic endothelial cells." [CL:CVS] subset: cell_slim synonym: "parachordal lymphangioblast" NARROW [] xref: CL:0005022 is_a: ZFA:0009393 ! lymphangioblast relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2012-01-12T05:21:09Z [Term] id: ZFA:0009396 name: glycinergic neuron namespace: zebrafish_anatomy def: "The neurons that utilize glycine as a neurotransmitter." [MP:0010385] subset: cell_slim xref: CL:1001509 is_a: ZFA:0009248 ! neuron relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown [Term] id: ZFA:0009397 name: cholangiocyte namespace: zebrafish_anatomy def: "An epithelial cell that is part of the bile duct. Cholangiocytes contribute to bile secretion via net release of bicarbonate and water. They are cuboidal epithelium in the small interlobular bile ducts, but become columnar and mucus secreting in larger bile ducts approaching the porta hepatis and the extrahepatic ducts." [PMID:16550043, PMID:18356246] subset: cell_slim synonym: "bile duct cells" RELATED [] synonym: "epithelial cell of bile duct" EXACT [] xref: CL:1000488 is_a: ZFA:0009372 ! duct epithelial cell relationship: develops_from ZFA:0009398 ! hepatoblast relationship: end ZFS:0000044 ! Adult relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2013-08-02T12:08:01Z [Term] id: ZFA:0009398 name: hepatoblast namespace: zebrafish_anatomy def: "Multi fate stem cell that gives rise to both hepatocytes and cholangiocytes as descendants." [GOC:cvs, ORCiD:0000-0002-2244-7917, PMID:18356246, PMID:20483998] subset: cell_slim is_a: ZFA:0009020 ! multi fate stem cell relationship: develops_from ZFA:0000124 ! liver primordium relationship: end ZFS:0000000 ! Unknown relationship: start ZFS:0000029 ! Pharyngula:Prim-5 created_by: Ceri creation_date: 2013-08-02T12:13:12Z [Term] id: ZFA:0009399 name: intestinal epithelial cell namespace: zebrafish_anatomy def: "An epithelial cell of the intestine." [GOC:tfm] subset: cell_slim xref: CL:0002563 is_a: ZFA:0009383 ! endo-epithelial cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0001338 ! intestine relationship: start ZFS:0000030 ! Pharyngula:Prim-15 created_by: Ceri creation_date: 2013-08-02T04:26:27Z [Term] id: ZFA:0009400 name: epithelial cell of esophagus namespace: zebrafish_anatomy def: "An epithelial cell of the esophagus." [GOC:tfm] subset: cell_slim xref: CL:0002252 is_a: ZFA:0009383 ! endo-epithelial cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000204 ! esophagus relationship: start ZFS:0000030 ! Pharyngula:Prim-15 created_by: Ceri creation_date: 2013-08-02T04:32:14Z [Term] id: ZFA:0009401 name: lens fiber cell namespace: zebrafish_anatomy def: "A vertebrate lens cell that is any of the elongated, tightly packed cells that make up the bulk of the mature lens in a camera-type eye." [GOC:nv] xref: CL:0011004 is_a: ZFA:0009000 ! cell relationship: end ZFS:0000044 ! Adult relationship: part_of ZFA:0000035 ! lens relationship: start ZFS:0000000 ! Unknown created_by: Ceri creation_date: 2017-09-01T15:46:37Z [Term] id: ZFA:0100000 name: zebrafish anatomical entity namespace: zebrafish_anatomy [Term] id: ZFS:0000000 name: Unknown namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-050211-1 is_a: ZFS:0100000 ! Stages [Term] id: ZFS:0000001 name: Zygote:1-cell namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-4 is_a: ZFS:0100000 ! Stages [Term] id: ZFS:0000002 name: Cleavage:2-cell namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-15 is_a: ZFS:0100000 ! Stages [Term] id: ZFS:0000003 name: Cleavage:4-cell namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-11 is_a: ZFS:0100000 ! Stages [Term] id: ZFS:0000004 name: Cleavage:8-cell namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-33 is_a: ZFS:0100000 ! Stages [Term] id: ZFS:0000005 name: Cleavage:16-cell namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-20 is_a: ZFS:0100000 ! Stages [Term] id: ZFS:0000006 name: Cleavage:32-cell namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-25 is_a: ZFS:0100000 ! Stages [Term] id: ZFS:0000007 name: Cleavage:64-cell namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-28 is_a: ZFS:0100000 ! Stages [Term] id: ZFS:0000008 name: Blastula:128-cell namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-7 is_a: ZFS:0100000 ! Stages [Term] id: ZFS:0000009 name: Blastula:256-cell namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-1 is_a: ZFS:0100000 ! Stages [Term] id: ZFS:0000010 name: Blastula:512-cell namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-14 is_a: ZFS:0100000 ! Stages [Term] id: ZFS:0000011 name: Blastula:1k-cell namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-22 is_a: ZFS:0100000 ! Stages [Term] id: ZFS:0000012 name: Blastula:High namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-27 is_a: ZFS:0100000 ! Stages [Term] id: ZFS:0000013 name: Blastula:Oblong namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-24 is_a: ZFS:0100000 ! Stages [Term] id: ZFS:0000014 name: Blastula:Sphere namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-21 is_a: ZFS:0100000 ! Stages [Term] id: ZFS:0000015 name: Blastula:Dome namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-19 is_a: ZFS:0100000 ! Stages [Term] id: ZFS:0000016 name: Blastula:30%-epiboly namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-17 is_a: ZFS:0100000 ! Stages [Term] id: ZFS:0000017 name: Gastrula:50%-epiboly namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-6 is_a: ZFS:0100000 ! Stages [Term] id: ZFS:0000018 name: Gastrula:Germ-ring namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-3 is_a: ZFS:0100000 ! Stages [Term] id: ZFS:0000019 name: Gastrula:Shield namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-2 is_a: ZFS:0100000 ! Stages [Term] id: ZFS:0000020 name: Gastrula:75%-epiboly namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-18 is_a: ZFS:0100000 ! Stages [Term] id: ZFS:0000021 name: Gastrula:90%-epiboly namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-29 is_a: ZFS:0100000 ! Stages [Term] id: ZFS:0000022 name: Gastrula:Bud namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-12 is_a: ZFS:0100000 ! Stages [Term] id: ZFS:0000023 name: Segmentation:1-4 somites namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-23 is_a: ZFS:0100000 ! Stages [Term] id: ZFS:0000024 name: Segmentation:5-9 somites namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-5 is_a: ZFS:0100000 ! Stages [Term] id: ZFS:0000025 name: Segmentation:10-13 somites namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-020626-1 is_a: ZFS:0100000 ! Stages [Term] id: ZFS:0000026 name: Segmentation:14-19 somites namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-30 is_a: ZFS:0100000 ! Stages [Term] id: ZFS:0000027 name: Segmentation:20-25 somites namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-16 is_a: ZFS:0100000 ! Stages [Term] id: ZFS:0000028 name: Segmentation:26+ somites namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-34 is_a: ZFS:0100000 ! Stages [Term] id: ZFS:0000029 name: Pharyngula:Prim-5 namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-10 is_a: ZFS:0100000 ! Stages [Term] id: ZFS:0000030 name: Pharyngula:Prim-15 namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-32 is_a: ZFS:0100000 ! Stages [Term] id: ZFS:0000031 name: Pharyngula:Prim-25 namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-13 is_a: ZFS:0100000 ! Stages [Term] id: ZFS:0000032 name: Pharyngula:High-pec namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-31 is_a: ZFS:0100000 ! Stages [Term] id: ZFS:0000033 name: Hatching:Long-pec namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-9 is_a: ZFS:0100000 ! Stages [Term] id: ZFS:0000034 name: Hatching:Pec-fin namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-26 is_a: ZFS:0100000 ! Stages [Term] id: ZFS:0000035 name: Larval:Protruding-mouth namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-8 is_a: ZFS:0100000 ! Stages [Term] id: ZFS:0000036 name: Larval:Day 4 namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-35 is_a: ZFS:0100000 ! Stages [Term] id: ZFS:0000037 name: Larval:Day 5 namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-36 is_a: ZFS:0100000 ! Stages [Term] id: ZFS:0000038 name: Larval:Day 6 namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-37 is_a: ZFS:0100000 ! Stages [Term] id: ZFS:0000039 name: Larval:Days 7-13 namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-47 is_a: ZFS:0100000 ! Stages [Term] id: ZFS:0000040 name: Larval:Days 14-20 namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-48 is_a: ZFS:0100000 ! Stages [Term] id: ZFS:0000041 name: Larval:Days 21-29 namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-49 is_a: ZFS:0100000 ! Stages [Term] id: ZFS:0000042 name: Juvenile:Days 30-44 namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-51 is_a: ZFS:0100000 ! Stages [Term] id: ZFS:0000043 name: Juvenile:Days 45-89 namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-52 is_a: ZFS:0100000 ! Stages [Term] id: ZFS:0000044 name: Adult namespace: zebrafish_stages xref: ZFIN:ZDB-STAGE-010723-39 is_a: ZFS:0100000 ! Stages [Term] id: ZFS:0100000 name: Stages namespace: zebrafish_stages [Typedef] id: continuous_with name: continuous with def: "X continuous_with Y if and only if X and Y share a fiat boundary." [goc:cjm] synonym: "continuous_with" EXACT [] xref: RO:0002150 is_symmetric: true [Typedef] id: develops_from name: develops from xref: RO:0002202 holds_over_chain: part_of develops_from is_transitive: true transitive_over: part_of ! part of [Typedef] id: end name: end stage def: "c existence ends during s iff end_of(c) part_of s." [goc:cjm] synonym: "ends_during" EXACT [] synonym: "existence ends during" RELATED [] xref: RO:0002497 [Typedef] id: has_developmental_contribution_from name: has developmental contribution from def: "x has developmental contribution from y iff x has some part z such that z develops from y." [goc:cjm] synonym: "has_developmental_contribution_from" EXACT [] xref: RO:0002254 holds_over_chain: has_part develops_from [Typedef] id: has_part name: has_part xref: BFO:0000051 is_transitive: true is_a: overlaps ! overlaps [Typedef] id: overlaps name: overlaps xref: RO:0002131 [Typedef] id: part_of name: part of xref: BFO:0000050 is_transitive: true is_a: overlaps ! overlaps inverse_of: has_part ! has_part [Typedef] id: start name: start stage def: "c existence starts during s iff start_of(c) part_of s." [goc:cjm] synonym: "existence starts during" RELATED [] synonym: "starts_during" EXACT [] xref: RO:0002496