{"id":"http://edamontology.org/operation_0310","prefLabel":"Sequence assembly","definition":["Combine (align and merge) overlapping fragments of a DNA sequence to reconstruct the original sequence.","For example, assemble overlapping reads from paired-end sequencers into contigs (a contiguous sequence corresponding to read overlaps). Or assemble contigs, for example ESTs and genomic DNA fragments, depending on the detected fragment overlaps."],"synonym":["Sequence assembly editing","Metagenomic assembly"],"prefixIRI":"operation_0310","label":["Sequence assembly"],"subClassOf":["http://edamontology.org/operation_2478"],"parents":[{"id":"http://edamontology.org/operation_2478","prefLabel":"Nucleic acid sequence analysis","synonym":["Sequence analysis (nucleic acid)","Nucleic acid sequence alignment analysis","Sequence alignment analysis (nucleic acid)"],"definition":["Analyse a nucleic acid sequence (using methods that are only applicable to nucleic acid sequences)."],"prefixIRI":"operation_2478","label":["Nucleic acid sequence analysis"],"subClassOf":["http://edamontology.org/operation_2403"],"prefLabelXl":[],"altLabelXl":[],"hiddenLabelXl":[],"obsolete":false,"notation":null,"semanticType":[],"cui":[],"xref":null,"inScheme":[],"created":null,"modified":null,"@id":"http://edamontology.org/operation_2478","@type":"http://www.w3.org/2002/07/owl#Class","links":{"self":"https://data.bioontology.org/ontologies/EDAM/classes/http%3A%2F%2Fedamontology.org%2Foperation_2478","ontology":"https://data.bioontology.org/ontologies/EDAM","children":"https://data.bioontology.org/ontologies/EDAM/classes/http%3A%2F%2Fedamontology.org%2Foperation_2478/children","parents":"https://data.bioontology.org/ontologies/EDAM/classes/http%3A%2F%2Fedamontology.org%2Foperation_2478/parents","descendants":"https://data.bioontology.org/ontologies/EDAM/classes/http%3A%2F%2Fedamontology.org%2Foperation_2478/descendants","ancestors":"https://data.bioontology.org/ontologies/EDAM/classes/http%3A%2F%2Fedamontology.org%2Foperation_2478/ancestors","instances":"https://data.bioontology.org/ontologies/EDAM/classes/http%3A%2F%2Fedamontology.org%2Foperation_2478/instances","tree":"https://data.bioontology.org/ontologies/EDAM/classes/http%3A%2F%2Fedamontology.org%2Foperation_2478/tree","notes":"https://data.bioontology.org/ontologies/EDAM/classes/http%3A%2F%2Fedamontology.org%2Foperation_2478/notes","mappings":"https://data.bioontology.org/ontologies/EDAM/classes/http%3A%2F%2Fedamontology.org%2Foperation_2478/mappings","ui":"http://bioportal.bioontology.org/ontologies/EDAM?p=classes&conceptid=http%3A%2F%2Fedamontology.org%2Foperation_2478","@context":{"self":"http://www.w3.org/2002/07/owl#Class","ontology":"http://data.bioontology.org/metadata/Ontology","children":"http://www.w3.org/2002/07/owl#Class","parents":"http://www.w3.org/2002/07/owl#Class","descendants":"http://www.w3.org/2002/07/owl#Class","ancestors":"http://www.w3.org/2002/07/owl#Class","instances":"http://data.bioontology.org/metadata/Instance","tree":"http://www.w3.org/2002/07/owl#Class","notes":"http://data.bioontology.org/metadata/Note","mappings":"http://data.bioontology.org/metadata/Mapping","ui":"http://www.w3.org/2002/07/owl#Class"}},"@context":{"@vocab":"http://data.bioontology.org/metadata/","label":"http://www.w3.org/2000/01/rdf-schema#label","prefLabel":"http://www.w3.org/2004/02/skos/core#prefLabel","prefLabelXl":"http://www.w3.org/2008/05/skos-xl#prefLabel","altLabelXl":"http://www.w3.org/2008/05/skos-xl#altLabel","hiddenLabelXl":"http://www.w3.org/2008/05/skos-xl#hiddenLabel","synonym":"http://www.w3.org/2004/02/skos/core#altLabel","definition":"http://www.w3.org/2004/02/skos/core#definition","obsolete":"http://www.w3.org/2002/07/owl#deprecated","notation":"http://www.w3.org/2004/02/skos/core#notation","prefixIRI":"http://data.bioontology.org/metadata/prefixIRI","subClassOf":"http://www.w3.org/2000/01/rdf-schema#subClassOf","semanticType":"http://bioportal.bioontology.org/ontologies/umls/hasSTY","cui":"http://bioportal.bioontology.org/ontologies/umls/cui","xref":"http://www.geneontology.org/formats/oboInOwl#hasDbXref","inScheme":"http://www.w3.org/2004/02/skos/core#inScheme","created":"http://purl.org/dc/terms/created","modified":"http://purl.org/dc/terms/modified","@language":[]}}],"obsolete":false,"notation":null,"semanticType":[],"cui":[],"xref":null,"inScheme":[],"created":null,"modified":null,"memberOf":[],"altLabelXl":[],"hiddenLabelXl":[],"prefLabelXl":[],"isInActiveScheme":[null],"isInActiveCollection":[],"properties":{"https://data.bioontology.org/metadata/def/prefLabel":["Sequence assembly"],"http://www.w3.org/2000/01/rdf-schema#seeAlso":["https://en.wikipedia.org/wiki/Sequence_assembly"],"http://www.w3.org/1999/02/22-rdf-syntax-ns#type":["http://www.w3.org/2002/07/owl#Class"],"http://www.geneontology.org/formats/oboInOwl#hasDefinition":["Combine (align and merge) overlapping fragments of a DNA sequence to reconstruct the original sequence."],"http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym":["Sequence assembly editing","Metagenomic assembly"],"http://www.geneontology.org/formats/oboInOwl#inSubset":["http://edamontology.org/bio","http://edamontology.org/operations"],"https://data.bioontology.org/metadata/prefixIRI":["operation_0310"],"http://www.w3.org/2000/01/rdf-schema#label":["Sequence assembly"],"http://www.w3.org/2000/01/rdf-schema#comment":["For example, assemble overlapping reads from paired-end sequencers into contigs (a contiguous sequence corresponding to read overlaps). Or assemble contigs, for example ESTs and genomic DNA fragments, depending on the detected fragment overlaps."],"http://edamontology.org/created_in":["beta12orEarlier"],"http://www.w3.org/2000/01/rdf-schema#subClassOf":["http://edamontology.org/operation_2478"]},"@id":"http://edamontology.org/operation_0310","@type":"http://www.w3.org/2002/07/owl#Class","links":{"self":"https://data.bioontology.org/ontologies/EDAM/classes/http%3A%2F%2Fedamontology.org%2Foperation_0310","ontology":"https://data.bioontology.org/ontologies/EDAM","children":"https://data.bioontology.org/ontologies/EDAM/classes/http%3A%2F%2Fedamontology.org%2Foperation_0310/children","parents":"https://data.bioontology.org/ontologies/EDAM/classes/http%3A%2F%2Fedamontology.org%2Foperation_0310/parents","descendants":"https://data.bioontology.org/ontologies/EDAM/classes/http%3A%2F%2Fedamontology.org%2Foperation_0310/descendants","ancestors":"https://data.bioontology.org/ontologies/EDAM/classes/http%3A%2F%2Fedamontology.org%2Foperation_0310/ancestors","instances":"https://data.bioontology.org/ontologies/EDAM/classes/http%3A%2F%2Fedamontology.org%2Foperation_0310/instances","tree":"https://data.bioontology.org/ontologies/EDAM/classes/http%3A%2F%2Fedamontology.org%2Foperation_0310/tree","notes":"https://data.bioontology.org/ontologies/EDAM/classes/http%3A%2F%2Fedamontology.org%2Foperation_0310/notes","mappings":"https://data.bioontology.org/ontologies/EDAM/classes/http%3A%2F%2Fedamontology.org%2Foperation_0310/mappings","ui":"http://bioportal.bioontology.org/ontologies/EDAM?p=classes&conceptid=http%3A%2F%2Fedamontology.org%2Foperation_0310","@context":{"self":"http://www.w3.org/2002/07/owl#Class","ontology":"http://data.bioontology.org/metadata/Ontology","children":"http://www.w3.org/2002/07/owl#Class","parents":"http://www.w3.org/2002/07/owl#Class","descendants":"http://www.w3.org/2002/07/owl#Class","ancestors":"http://www.w3.org/2002/07/owl#Class","instances":"http://data.bioontology.org/metadata/Instance","tree":"http://www.w3.org/2002/07/owl#Class","notes":"http://data.bioontology.org/metadata/Note","mappings":"http://data.bioontology.org/metadata/Mapping","ui":"http://www.w3.org/2002/07/owl#Class"}},"@context":{"@vocab":"http://data.bioontology.org/metadata/","label":"http://www.w3.org/2000/01/rdf-schema#label","prefLabel":"http://www.w3.org/2004/02/skos/core#prefLabel","prefLabelXl":"http://www.w3.org/2008/05/skos-xl#prefLabel","altLabelXl":"http://www.w3.org/2008/05/skos-xl#altLabel","hiddenLabelXl":"http://www.w3.org/2008/05/skos-xl#hiddenLabel","synonym":"http://www.w3.org/2004/02/skos/core#altLabel","definition":"http://www.w3.org/2004/02/skos/core#definition","obsolete":"http://www.w3.org/2002/07/owl#deprecated","notation":"http://www.w3.org/2004/02/skos/core#notation","prefixIRI":"http://data.bioontology.org/metadata/prefixIRI","parents":"http://www.w3.org/2000/01/rdf-schema##","subClassOf":"http://www.w3.org/2000/01/rdf-schema#subClassOf","semanticType":"http://bioportal.bioontology.org/ontologies/umls/hasSTY","cui":"http://bioportal.bioontology.org/ontologies/umls/cui","xref":"http://www.geneontology.org/formats/oboInOwl#hasDbXref","inScheme":"http://www.w3.org/2004/02/skos/core#inScheme","created":"http://purl.org/dc/terms/created","modified":"http://purl.org/dc/terms/modified","@language":[]}}