29 20 0 http://edamontology.org/data_1022 Sequence feature label 'Sequence feature label' SubClassOf 'Sequence feature identifier' 'Sequence feature label' SubClassOf 'Name' http://edamontology.org/topic_3301 Microbiology 'Microbiology' SubClassOf 'Biomedical science' 'Microbiology' SubClassOf 'Biology' http://edamontology.org/operation_1781 Gene regulatory network analysis 'Gene regulatory network analysis' SubClassOf 'has topic' some 'Gene regulatory networks' 'Gene regulatory network analysis' SubClassOf 'has topic' some 'Molecular interactions, pathways and networks' http://edamontology.org/operation_0490 Dotplot plotting 'Dotplot plotting' SubClassOf 'Sequence alignment visualisation' 'Dotplot plotting' SubClassOf 'Sequence visualisation' http://edamontology.org/operation_2241 Transmembrane protein visualisation 'Transmembrane protein visualisation' SubClassOf 'Protein secondary structure rendering' 'Transmembrane protein visualisation' SubClassOf 'Structure visualisation' http://edamontology.org/data_3707 Biodiversity report 'Biodiversity report' SubClassOf http://edamontology.org/data_3736 http://edamontology.org/data_1696 Drug report 'Drug report' SubClassOf 'has topic' some 'Drugs and target structures' 'Drug report' SubClassOf 'has topic' some 'Small molecules' http://edamontology.org/data_2106 Reaction ID (BioCyc) 'Reaction ID (BioCyc)' SubClassOf 'has topic' some 'Peptides and amino acids' 'Reaction ID (BioCyc)' SubClassOf 'has topic' some 'Small molecules' http://edamontology.org/operation_3223 Differential expression analysis 'Differential expression analysis' SubClassOf 'Gene expression profile comparison' 'Differential expression analysis' SubClassOf http://edamontology.org/operation_3742 'Differential expression analysis' SubClassOf 'Nucleic acid comparison' http://edamontology.org/operation_0224 Query and retrieval 'Query and retrieval' SubClassOf 'has topic' some 'Information retrieval' 'Query and retrieval' SubClassOf 'has topic' some 'Data management' http://edamontology.org/format_3261 RDF/XML 'RDF/XML' SubClassOf 'OWL format' http://edamontology.org/data_0956 Data index report 'Data index report' SubClassOf 'has topic' some 'Document, record and content management' 'Data index report' SubClassOf 'has topic' some 'Database management' http://edamontology.org/data_0955 Data index 'Data index' SubClassOf 'has topic' some 'Document, record and content management' 'Data index' SubClassOf 'has topic' some 'Database management' http://edamontology.org/format_3464 JSON 'JSON' SubClassOf 'Textual format' 'JSON' SubClassOf 'Format' 'JSON' SubClassOf http://edamontology.org/format_3750 http://edamontology.org/format_2197 OWL format 'OWL format' SubClassOf 'XML' 'OWL format' SubClassOf 'RDF format' 'OWL format' SubClassOf 'Ontology format' http://edamontology.org/data_3356 Hidden Markov model 'Hidden Markov model' SubClassOf 'Mathematical model' 'Hidden Markov model' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/operation_0565 Sequence alignment visualisation 'Sequence alignment visualisation' SubClassOf 'has input' some 'Sequence alignment' 'Sequence alignment visualisation' SubClassOf 'Visualisation' 'Sequence alignment visualisation' SubClassOf 'Sequence analysis' 'Sequence alignment visualisation' SubClassOf 'has output' some 'Sequence alignment image' 'Sequence alignment visualisation' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/operation_0569 Protein secondary structure rendering Protein secondary structure visualisation 'Protein secondary structure rendering' SubClassOf 'has topic' some 'Protein structure analysis' 'Protein secondary structure rendering' SubClassOf 'Visualisation' 'Protein secondary structure rendering' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/operation_0568 RNA secondary structure visualisation 'RNA secondary structure visualisation' SubClassOf 'has input' some 'RNA secondary structure' 'RNA secondary structure visualisation' SubClassOf 'RNA secondary structure analysis' 'RNA secondary structure visualisation' SubClassOf 'Visualisation' 'RNA secondary structure visualisation' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/operation_2409 Data handling 'Data handling' SubClassOf 'has topic' some 'Document, record and content management' 'Data handling' SubClassOf 'has topic' some 'Database management' http://edamontology.org/format_2376 RDF format 'RDF format' SubClassOf 'XML' 'RDF format' SubClassOf http://edamontology.org/format_3748 'RDF format' SubClassOf 'Format' http://edamontology.org/data_1364 Hidden Markov model 'Hidden Markov model' SubClassOf 'Mathematical model' http://edamontology.org/operation_2437 Gene regulatory network prediction 'Gene regulatory network prediction' SubClassOf 'has topic' some 'Gene regulatory networks' 'Gene regulatory network prediction' SubClassOf 'has topic' some 'Molecular interactions, pathways and networks' http://edamontology.org/format_3655 pepXML 'pepXML' SubClassOf 'XML' http://edamontology.org/data_3107 Sequence feature name 'Sequence feature name' SubClassOf 'Name' 'Sequence feature name' SubClassOf 'Sequence feature identifier' 'Sequence feature name' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/operation_2486 Topology diagram drawing 'Topology diagram drawing' SubClassOf 'Protein secondary structure rendering' 'Topology diagram drawing' SubClassOf 'Structure visualisation' http://edamontology.org/operation_2485 Helical wheel drawing 'Helical wheel drawing' SubClassOf 'Protein secondary structure rendering' 'Helical wheel drawing' SubClassOf 'Structure visualisation' http://edamontology.org/data_0863 Sequence alignment 'Sequence alignment' SubClassOf 'has topic' some 'Sequence comparison' 'Sequence alignment' SubClassOf 'has topic' some 'Sequence analysis' http://edamontology.org/data_0886 Structure alignment 'Structure alignment' SubClassOf 'has topic' some 'Structure comparison' 'Structure alignment' SubClassOf 'has topic' some 'Structure analysis' http://edamontology.org/data_3743 Ordination plot 'Ordination plot' SubClassOf 'Protein property' 'Ordination plot' SubClassOf 'Plot' http://edamontology.org/data_3738 Beta diversity data 'Beta diversity data' SubClassOf 'Biodiversity report' http://edamontology.org/data_3739 Gamma diversity data 'Gamma diversity data' SubClassOf 'Biodiversity report' http://edamontology.org/data_3734 Lane identifier 'Lane identifier' SubClassOf 'Sequencing metadata name' http://edamontology.org/data_3735 Run number 'Run number' SubClassOf 'Sequencing metadata name' http://edamontology.org/data_3736 Ecological data 'Ecological data' SubClassOf 'Data' http://edamontology.org/data_3737 Alpha diversity data 'Alpha diversity data' SubClassOf 'Biodiversity report' http://edamontology.org/data_3732 Sequencing metadata name 'Sequencing metadata name' SubClassOf 'Name' http://edamontology.org/data_3733 Flow cell identifier 'Flow cell identifier' SubClassOf 'Sequencing metadata name' http://edamontology.org/format_3750 YAML 'YAML' SubClassOf 'Format' http://edamontology.org/format_3747 protXML 'protXML' SubClassOf 'Mass spectrometry data format' 'protXML' SubClassOf 'XML' http://edamontology.org/format_3746 BIOM format 'BIOM format' SubClassOf 'Textual format' 'BIOM format' SubClassOf 'Biodiversity data format' http://edamontology.org/format_3749 JSON-LD 'JSON-LD' SubClassOf 'RDF format' 'JSON-LD' SubClassOf 'JSON' 'JSON-LD' SubClassOf 'Linked data format' http://edamontology.org/format_3748 Linked data format 'Linked data format' SubClassOf 'Format (typed)' http://edamontology.org/operation_3731 Sample comparison 'Sample comparison' SubClassOf 'Comparison' http://edamontology.org/operation_3730 Cross-assembly 'Cross-assembly' SubClassOf 'Sequence assembly' http://edamontology.org/operation_3745 Ancestral reconstruction 'Ancestral reconstruction' SubClassOf 'Phylogenetic tree analysis' http://edamontology.org/operation_3744 Multiple sample visualisation 'Multiple sample visualisation' SubClassOf 'Visualisation' http://edamontology.org/operation_3742 Differential expression analysis 'Differential expression analysis' SubClassOf 'Comparison' http://edamontology.org/operation_3741 Differential protein expression analysis 'Differential protein expression analysis' SubClassOf 'Differential expression analysis' 'Differential protein expression analysis' SubClassOf 'Protein comparison'