39 40 0 http://edamontology.org/operation_0346 Sequence similarity search 'Sequence similarity search' SubClassOf 'Database search' 'Sequence similarity search' SubClassOf 'Structure database search' 'Sequence similarity search' SubClassOf 'Sequence database search' http://edamontology.org/data_3671 Text 'Text' SubClassOf 'Parameter' http://edamontology.org/format_3164 GTrack 'GTrack' SubClassOf 'Sequence feature table format (text)' http://edamontology.org/operation_3437 Article comparison 'Article comparison' SubClassOf 'has topic' some 'Literature and reference' http://edamontology.org/operation_3435 Standardization and normalization 'Standardization and normalization' SubClassOf 'Operation' 'Standardization and normalization' SubClassOf 'Statistical calculation' http://edamontology.org/operation_0305 Literature search 'Literature search' SubClassOf 'has output' some 'Citation' http://edamontology.org/operation_0306 Text mining 'Text mining' SubClassOf 'has input' some 'Report' 'Text mining' SubClassOf 'has input' some 'Text' 'Text mining' SubClassOf 'Prediction and recognition' http://edamontology.org/operation_0311 Microarray data standardization and normalization 'Microarray data standardization and normalization' SubClassOf 'has output' some 'Microarray hybridisation data' 'Microarray data standardization and normalization' SubClassOf 'Standardization and normalization' 'Microarray data standardization and normalization' SubClassOf 'has input' some 'Microarray hybridisation data' 'Microarray data standardization and normalization' SubClassOf 'Gene expression data analysis' 'Microarray data standardization and normalization' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/operation_2947 Article analysis 'Article analysis' SubClassOf 'has topic' some 'Literature and reference' 'Article analysis' SubClassOf 'Text mining' 'Article analysis' SubClassOf 'has output' some 'Article data' 'Article analysis' SubClassOf 'has input' some 'Article' 'Article analysis' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/operation_3502 Chemical class enrichment 'Chemical class enrichment' SubClassOf 'Gene expression data analysis' http://edamontology.org/operation_3501 Enrichment 'Enrichment' SubClassOf 'Operation' 'Enrichment' SubClassOf 'has topic' some 'Function analysis' 'Enrichment' SubClassOf 'Gene expression data analysis' 'Enrichment' SubClassOf 'has output' some http://edamontology.org/data_3753 'Enrichment' SubClassOf 'Analysis' http://edamontology.org/format_2547 uniprotkb-like format 'uniprotkb-like format' SubClassOf 'Sequence feature table format (text)' 'uniprotkb-like format' SubClassOf 'Sequence feature table format' http://edamontology.org/operation_0498 Consensus-based sequence alignment 'Consensus-based sequence alignment' SubClassOf 'Sequence alignment' 'Consensus-based sequence alignment' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/operation_0491 Pairwise sequence alignment 'Pairwise sequence alignment' SubClassOf 'Multiple sequence alignment' 'Pairwise sequence alignment' SubClassOf 'Sequence alignment' http://edamontology.org/topic_0218 Text mining 'Text mining' SubClassOf 'Computer science' http://edamontology.org/operation_3200 Community profiling 'Community profiling' SubClassOf 'Taxonomic classification' http://edamontology.org/data_2914 Sequence features metadata 'Sequence features metadata' SubClassOf 'Parameter' 'Sequence features metadata' SubClassOf 'Data' http://edamontology.org/data_1636 Heat map 'Heat map' SubClassOf 'Gene expression data' 'Heat map' SubClassOf http://edamontology.org/data_3768 http://edamontology.org/data_2984 Pathway or network report 'Pathway or network report' SubClassOf 'Report' 'Pathway or network report' SubClassOf http://edamontology.org/data_3753 http://edamontology.org/operation_3280 Named entity recognition 'Named entity recognition' SubClassOf 'Prediction and recognition' http://edamontology.org/data_0945 Peptide identification 'Peptide identification' SubClassOf 'Protein property' http://edamontology.org/data_0972 Text mining report 'Text mining report' SubClassOf 'Article data' http://edamontology.org/data_0971 Article 'Article' SubClassOf 'has topic' some 'Literature and reference' 'Article' SubClassOf 'Text' http://edamontology.org/format_1741 Oscar3 'Oscar3' SubClassOf 'Text mining report format' 'Oscar3' SubClassOf 'XML' 'Oscar3' SubClassOf http://edamontology.org/format_3780 http://edamontology.org/format_1740 iHOP text mining abstract format 'iHOP text mining abstract format' SubClassOf 'Textual format' 'iHOP text mining abstract format' SubClassOf 'XML' 'iHOP text mining abstract format' SubClassOf 'HTML' http://edamontology.org/format_3475 TSV 'TSV' SubClassOf 'Textual format' 'TSV' SubClassOf http://edamontology.org/format_3751 http://edamontology.org/data_2534 Sequence attribute 'Sequence attribute' SubClassOf 'Parameter' 'Sequence attribute' SubClassOf 'Data' http://edamontology.org/operation_3625 Relationship inference 'Relationship inference' SubClassOf 'has output' some 'Article data' 'Relationship inference' SubClassOf 'has topic' some 'Literature and reference' 'Relationship inference' SubClassOf 'has input' some 'Article' http://edamontology.org/operation_0504 Multiple structure alignment construction 'Multiple structure alignment construction' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass 'Multiple structure alignment construction' SubClassOf 'Structure alignment' http://edamontology.org/operation_0511 Profile-to-profile alignment (pairwise) 'Profile-to-profile alignment (pairwise)' SubClassOf 'Profile-to-profile alignment' 'Profile-to-profile alignment (pairwise)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/operation_0513 3D profile-to-3D profile alignment (pairwise) '3D profile-to-3D profile alignment (pairwise)' SubClassOf '3D profile-to-3D profile alignment' '3D profile-to-3D profile alignment (pairwise)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/data_2526 Article data 'Article data' SubClassOf 'has topic' some 'Literature and reference' http://edamontology.org/data_2527 Parameter 'Parameter' SubClassOf 'Data' 'Identifier' DisjointWith 'Parameter' 'Parameter' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/format_2352 BioXSD 'BioXSD' SubClassOf 'is format of' some 'Experimental measurement' 'BioXSD' SubClassOf 'is format of' some 'Score' http://edamontology.org/operation_2456 GPCR classification 'GPCR classification' SubClassOf 'has output' some 'Protein family report' 'GPCR classification' SubClassOf 'Sequence classification' 'GPCR classification' SubClassOf 'GPCR analysis' 'GPCR classification' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/operation_2436 Functional enrichment 'Functional enrichment' SubClassOf 'has output' some http://edamontology.org/data_3754 'Functional enrichment' SubClassOf 'Gene set testing' http://edamontology.org/data_1394 Alignment score or penalty 'Alignment score or penalty' SubClassOf 'Parameter' 'Alignment score or penalty' SubClassOf 'Score' http://edamontology.org/data_0842 Identifier 'Identifier' DisjointWith 'Parameter' http://edamontology.org/format_3622 GeminiSQLite 'GeminiSQLite' SubClassOf 'Binary format' 'GeminiSQLite' SubClassOf 'SQLite' 'GeminiSQLite' SubClassOf 'Sequence variation annotation format' http://edamontology.org/data_3756 Localisation score 'Localisation score' SubClassOf 'Score' http://edamontology.org/data_3757 Unimod ID 'Unimod ID' SubClassOf 'Protein modification ID' http://edamontology.org/data_3759 ProteomeXchange ID 'ProteomeXchange ID' SubClassOf 'Experiment annotation ID' http://edamontology.org/data_3753 Over-representation report 'Over-representation report' SubClassOf 'Report' http://edamontology.org/data_3754 GO-term enrichment report 'GO-term enrichment report' SubClassOf 'Over-representation report' 'GO-term enrichment report' SubClassOf 'has topic' some 'Function analysis' http://edamontology.org/data_3768 Clustered gene expression profiles 'Clustered gene expression profiles' SubClassOf 'Gene expression data' http://edamontology.org/data_3769 BRENDA ontology concept ID 'BRENDA ontology concept ID' SubClassOf 'Ontology concept ID' http://edamontology.org/data_3779 Annotated text 'Annotated text' SubClassOf 'Text data' 'Annotated text' SubClassOf 'Text' http://edamontology.org/data_3786 Query script 'Query script' SubClassOf 'Data' http://edamontology.org/format_3790 SPARQL 'SPARQL' SubClassOf 'Textual format' http://edamontology.org/format_3765 KNIME datatable format 'KNIME datatable format' SubClassOf 'Workflow format' http://edamontology.org/format_3764 idXML 'idXML' SubClassOf 'Mass spectrometry data format' 'idXML' SubClassOf 'XML' http://edamontology.org/format_3752 CSV 'CSV' SubClassOf 'DSV' http://edamontology.org/format_3751 DSV 'DSV' SubClassOf 'Textual format' http://edamontology.org/format_3758 SEQUEST .out file 'SEQUEST .out file' SubClassOf 'Mass spectrometry data format' 'SEQUEST .out file' SubClassOf 'Textual format' http://edamontology.org/format_3783 PubTator format 'PubTator format' SubClassOf 'Textual format' 'PubTator format' SubClassOf 'Annotated text format' http://edamontology.org/format_3782 BioC 'BioC' SubClassOf 'XML' 'BioC' SubClassOf 'Annotated text format' http://edamontology.org/format_3785 BioNLP Shared Task format 'BioNLP Shared Task format' SubClassOf 'Annotated text format' 'BioNLP Shared Task format' SubClassOf 'Textual format' http://edamontology.org/format_3784 Open Annotation format 'Open Annotation format' SubClassOf 'RDF format' 'Open Annotation format' SubClassOf 'Annotated text format' 'Open Annotation format' SubClassOf 'JSON-LD' http://edamontology.org/format_3781 PubAnnotation format 'PubAnnotation format' SubClassOf 'JSON' 'PubAnnotation format' SubClassOf 'Annotated text format' http://edamontology.org/format_3780 Annotated text format 'Annotated text format' SubClassOf 'is format of' some 'Annotated text' 'Annotated text format' SubClassOf 'Format (by type of data)' http://edamontology.org/format_3787 Query language 'Query language' SubClassOf 'is format of' some 'Query script' 'Query language' SubClassOf 'Format (by type of data)' http://edamontology.org/format_3789 XQuery 'XQuery' SubClassOf 'Textual format' http://edamontology.org/format_3788 SQL 'SQL' SubClassOf 'Textual format' http://edamontology.org/format_3772 BioJSON (BioXSD) 'BioJSON (BioXSD)' SubClassOf 'is format of' some 'Sequence' 'BioJSON (BioXSD)' SubClassOf 'Alignment format' 'BioJSON (BioXSD)' SubClassOf 'Raw sequence format' 'BioJSON (BioXSD)' SubClassOf 'Sequence record format' 'BioJSON (BioXSD)' SubClassOf 'JSON' 'BioJSON (BioXSD)' SubClassOf 'is format of' some 'Sequence alignment' 'BioJSON (BioXSD)' SubClassOf 'is format of' some 'Sequence features' 'BioJSON (BioXSD)' SubClassOf 'is format of' some 'Score' 'BioJSON (BioXSD)' SubClassOf 'Sequence feature annotation format' 'BioJSON (BioXSD)' SubClassOf 'is format of' some 'Experimental measurement' http://edamontology.org/format_3771 UniProtKB RDF 'UniProtKB RDF' SubClassOf 'RDF format' 'UniProtKB RDF' SubClassOf 'uniprotkb-like format' http://edamontology.org/format_3774 BioJSON (Jalview) 'BioJSON (Jalview)' SubClassOf 'JSON' 'BioJSON (Jalview)' SubClassOf 'Alignment format' 'BioJSON (Jalview)' SubClassOf 'is format of' some 'Sequence features' 'BioJSON (Jalview)' SubClassOf 'Sequence feature annotation format' 'BioJSON (Jalview)' SubClassOf 'is format of' some 'Sequence alignment' http://edamontology.org/format_3773 BioYAML 'BioYAML' SubClassOf 'is format of' some 'Sequence' 'BioYAML' SubClassOf 'is format of' some 'Sequence features' 'BioYAML' SubClassOf 'is format of' some 'Score' 'BioYAML' SubClassOf 'is format of' some 'Experimental measurement' 'BioYAML' SubClassOf 'Raw sequence format' 'BioYAML' SubClassOf 'Alignment format' 'BioYAML' SubClassOf 'is format of' some 'Sequence alignment' 'BioYAML' SubClassOf 'Sequence feature annotation format' 'BioYAML' SubClassOf 'Sequence record format' 'BioYAML' SubClassOf 'YAML' http://edamontology.org/format_3770 UniProtKB XML 'UniProtKB XML' SubClassOf 'uniprotkb-like format' 'UniProtKB XML' SubClassOf 'Sequence record format (XML)' 'UniProtKB XML' SubClassOf 'XML' http://edamontology.org/format_3776 BTrack 'BTrack' SubClassOf 'Sequence annotation track format' 'BTrack' SubClassOf 'Binary format' 'BTrack' SubClassOf 'Sequence feature annotation format' 'BTrack' SubClassOf 'Sequence feature table format' http://edamontology.org/format_3775 GSuite 'GSuite' SubClassOf 'Textual format' 'GSuite' SubClassOf 'Sequence feature annotation format' http://edamontology.org/format_3777 MCPD 'MCPD' SubClassOf 'is format of' some 'Reference sample report' 'MCPD' SubClassOf 'Textual format' 'MCPD' SubClassOf 'Biodiversity data format' 'MCPD' SubClassOf 'is format of' some 'Organism report' 'MCPD' SubClassOf 'is format of' some 'Sample annotation' http://edamontology.org/operation_3778 Text annotation 'Text annotation' SubClassOf 'Annotation' 'Text annotation' SubClassOf 'has output' some 'Annotated text' 'Text annotation' SubClassOf 'has topic' some 'Literature and language' 'Text annotation' SubClassOf 'Analysis' 'Text annotation' SubClassOf 'has input' some 'Text' http://edamontology.org/operation_3755 PTM localisation 'PTM localisation' SubClassOf 'PTM identification' http://edamontology.org/operation_3767 Protein identification 'Protein identification' SubClassOf 'has input' some 'Mass spectrometry spectra' 'Protein identification' SubClassOf 'Protein analysis' 'Protein identification' SubClassOf 'Spectral analysis' http://edamontology.org/operation_3766 Weighted correlation network analysis 'Weighted correlation network analysis' SubClassOf 'has topic' some 'Molecular interactions, pathways and networks' 'Weighted correlation network analysis' SubClassOf 'Pathway or network analysis' http://edamontology.org/operation_3763 Service invocation 'Service invocation' SubClassOf 'Service management' http://edamontology.org/operation_3762 Service composition 'Service composition' SubClassOf 'Service management' http://edamontology.org/operation_3761 Service discovery 'Service discovery' SubClassOf 'Service management' http://edamontology.org/operation_3760 Service management 'Service management' SubClassOf 'Operation'