39 14 0 http://edamontology.org/operation_3430 Nucleic acid sequence feature detection 'Nucleic acid sequence feature detection' SubClassOf 'Nucleic acid feature detection' 'Nucleic acid sequence feature detection' SubClassOf 'Sequence feature detection' 'Nucleic acid sequence feature detection' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/operation_0304 Metadata retrieval 'Metadata retrieval' SubClassOf 'has output' some 'Resource metadata' 'Metadata retrieval' SubClassOf 'Data retrieval' 'Metadata retrieval' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/topic_2818 Eukaryotes 'Eukaryotes' SubClassOf 'Model organisms' 'Eukaryotes' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/topic_2815 Humans 'Humans' SubClassOf 'Vertebrates' 'Humans' SubClassOf 'Biology' http://edamontology.org/topic_2819 Invertebrates 'Invertebrates' SubClassOf 'Animals' 'Invertebrates' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/operation_0484 SNP detection 'SNP detection' SubClassOf 'Nucleic acid sequence feature detection' 'SNP detection' SubClassOf 'Nucleic acid feature detection' http://edamontology.org/topic_2821 Unicellular eukaryotes 'Unicellular eukaryotes' SubClassOf 'Eukaryotes' 'Unicellular eukaryotes' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/topic_2820 Vertebrates 'Vertebrates' SubClassOf 'Animals' 'Vertebrates' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/topic_0213 Mice or rats 'Mice or rats' SubClassOf 'Vertebrates' 'Mice or rats' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/operation_0422 Protein cleavage site prediction 'Protein cleavage site prediction' SubClassOf 'Protein sequence feature detection' 'Protein cleavage site prediction' SubClassOf 'Protein feature detection' http://edamontology.org/operation_0421 Protein folding site prediction 'Protein folding site prediction' SubClassOf 'Protein sequence feature detection' 'Protein folding site prediction' SubClassOf 'Protein feature detection' http://edamontology.org/operation_0427 Transposon prediction 'Transposon prediction' SubClassOf 'Nucleic acid sequence feature detection' 'Transposon prediction' SubClassOf 'Nucleic acid feature detection' http://edamontology.org/operation_0417 Protein post-translation modification site prediction 'Protein post-translation modification site prediction' SubClassOf 'Protein sequence feature detection' 'Protein post-translation modification site prediction' SubClassOf 'Protein feature detection' http://edamontology.org/operation_0418 Protein signal peptide detection 'Protein signal peptide detection' SubClassOf 'Protein sequence feature detection' 'Protein signal peptide detection' SubClassOf 'Protein feature detection' http://edamontology.org/operation_0433 Splice site prediction 'Splice site prediction' SubClassOf 'Nucleic acid sequence feature detection' 'Splice site prediction' SubClassOf 'Nucleic acid feature detection' http://edamontology.org/operation_0431 Restriction site recognition 'Restriction site recognition' SubClassOf 'Nucleic acid sequence feature detection' 'Restriction site recognition' SubClassOf 'Nucleic acid feature detection' http://edamontology.org/operation_0432 Nucleosome formation or exclusion sequence prediction 'Nucleosome formation or exclusion sequence prediction' SubClassOf 'Nucleic acid sequence feature detection' 'Nucleosome formation or exclusion sequence prediction' SubClassOf 'Nucleic acid feature detection' http://edamontology.org/operation_0430 CpG island and isochore detection 'CpG island and isochore detection' SubClassOf 'Nucleic acid sequence feature detection' 'CpG island and isochore detection' SubClassOf 'Nucleic acid feature detection' http://edamontology.org/operation_0428 PolyA signal detection 'PolyA signal detection' SubClassOf 'Nucleic acid sequence feature detection' 'PolyA signal detection' SubClassOf 'Nucleic acid feature detection' http://edamontology.org/operation_0429 Quadruplex formation site detection 'Quadruplex formation site detection' SubClassOf 'Nucleic acid sequence feature detection' 'Quadruplex formation site detection' SubClassOf 'Nucleic acid feature detection' http://edamontology.org/operation_0411 Protein signal peptide detection (eukaryotes) 'Protein signal peptide detection (eukaryotes)' SubClassOf 'Protein signal peptide detection' 'Protein signal peptide detection (eukaryotes)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/operation_0412 Protein signal peptide detection (bacteria) 'Protein signal peptide detection (bacteria)' SubClassOf 'Protein signal peptide detection' 'Protein signal peptide detection (bacteria)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/operation_0416 Epitope mapping 'Epitope mapping' SubClassOf 'Protein sequence feature detection' 'Epitope mapping' SubClassOf 'Protein feature detection' http://edamontology.org/operation_3223 Differential gene expression analysis 'Differential gene expression analysis' SubClassOf 'Differential gene expression analysis' http://edamontology.org/operation_3222 Peak calling 'Peak calling' SubClassOf 'Nucleic acid sequence feature detection' 'Peak calling' SubClassOf 'Nucleic acid feature detection' http://edamontology.org/operation_3197 Genetic variation analysis 'Genetic variation analysis' SubClassOf 'Nucleic acid sequence feature detection' 'Genetic variation analysis' SubClassOf 'Nucleic acid feature detection' http://edamontology.org/operation_0242 Conserved transcription regulatory sequence identification 'Conserved transcription regulatory sequence identification' SubClassOf 'Nucleic acid sequence feature detection' 'Conserved transcription regulatory sequence identification' SubClassOf 'Nucleic acid feature detection' http://edamontology.org/operation_3289 ID retrieval 'ID retrieval' SubClassOf 'has output' some 'Identifier' 'ID retrieval' SubClassOf 'Metadata retrieval' 'ID retrieval' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/topic_0781 Viruses 'Viruses' SubClassOf 'Model organisms' 'Viruses' SubClassOf 'Biology' http://edamontology.org/topic_0782 Fungi 'Fungi' SubClassOf 'Eukaryotes' 'Fungi' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/topic_0780 Plants 'Plants' SubClassOf 'Eukaryotes' 'Plants' SubClassOf 'Biology' http://edamontology.org/topic_0783 Pathogens 'Pathogens' SubClassOf 'Model organisms' 'Pathogens' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/operation_3087 Protein sequence feature detection 'Protein sequence feature detection' SubClassOf 'Sequence feature detection' 'Protein sequence feature detection' SubClassOf 'Protein sequence analysis' 'Protein sequence feature detection' SubClassOf 'Protein feature detection' 'Protein sequence feature detection' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/topic_1811 Prokaryotes and Archaea 'Prokaryotes and Archaea' SubClassOf 'Model organisms' 'Prokaryotes and Archaea' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/operation_3630 Protein quantification 'Protein quantification' SubClassOf http://edamontology.org/operation_3799 http://edamontology.org/operation_3742 Differential gene expression analysis 'Differential gene expression analysis' SubClassOf 'Comparison' 'Differential gene expression analysis' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/operation_3741 Differential protein expression analysis 'Differential protein expression analysis' SubClassOf 'Differential gene expression analysis' 'Differential protein expression analysis' SubClassOf 'Differential gene expression analysis' http://edamontology.org/operation_2454 Gene prediction 'Gene prediction' SubClassOf 'Nucleic acid sequence feature detection' 'Gene prediction' SubClassOf 'Nucleic acid feature detection' http://edamontology.org/topic_3500 Animals 'Animals' SubClassOf 'Eukaryotes' 'Animals' SubClassOf 'Biology' http://edamontology.org/format_3804 xsd 'xsd' SubClassOf 'XML' http://edamontology.org/topic_3796 Population genomics 'Population genomics' SubClassOf 'Genomics' http://edamontology.org/topic_3794 RNA immunoprecipitation 'RNA immunoprecipitation' SubClassOf 'Immunoprecipitation experiment' http://edamontology.org/operation_3800 RNA-Seq quantification 'RNA-Seq quantification' SubClassOf 'Quantification' http://edamontology.org/operation_3803 Natural product identification 'Natural product identification' SubClassOf 'Spectral analysis' http://edamontology.org/operation_3802 Sorting 'Sorting' SubClassOf 'Data handling' http://edamontology.org/operation_3801 Spectral library search 'Spectral library search' SubClassOf 'has input' some 'Mass spectrometry spectra' 'Spectral library search' SubClassOf 'Peptide identification' http://edamontology.org/operation_3799 Quantification 'Quantification' SubClassOf 'Operation' http://edamontology.org/operation_3798 Read binning 'Read binning' SubClassOf 'Nucleic acid sequence analysis' http://edamontology.org/operation_3797 Rarefaction 'Rarefaction' SubClassOf 'Operation' http://edamontology.org/operation_3792 miRNA analysis 'miRNA analysis' SubClassOf 'Gene expression analysis' http://edamontology.org/operation_3791 Collapsing methods 'Collapsing methods' SubClassOf 'Genetic variation analysis' http://edamontology.org/operation_3795 In vitro selection 'In vitro selection' SubClassOf 'Nucleic acid design' http://edamontology.org/operation_3793 Read summarisation 'Read summarisation' SubClassOf 'Nucleic acid sequence analysis'