99 5 0 http://edamontology.org/operation_0320 Protein structure assignment 'Protein structure assignment' SubClassOf 'Protein analysis' 'Protein structure assignment' SubClassOf 'Prediction and recognition' http://edamontology.org/operation_0319 Protein secondary structure assignment 'Protein secondary structure assignment' SubClassOf 'Prediction and recognition (protein)' 'Protein secondary structure assignment' SubClassOf 'Protein structure assignment' http://edamontology.org/operation_0331 Protein modelling (mutation) 'Protein modelling (mutation)' SubClassOf 'Prediction and recognition (protein)' http://edamontology.org/operation_0329 Protein folding pathway prediction 'Protein folding pathway prediction' SubClassOf 'Protein folding analysis' 'Protein folding pathway prediction' SubClassOf 'Prediction and recognition (protein)' 'Protein folding pathway prediction' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/operation_0366 Protein sequence cleavage 'Protein sequence cleavage' SubClassOf 'Protein property calculation' http://edamontology.org/operation_3433 Assembly 'Assembly' SubClassOf 'Operation' 'Assembly' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/operation_3431 Deposition 'Deposition' SubClassOf 'Operation' 'Deposition' SubClassOf 'Data handling' http://edamontology.org/data_1079 Electron microscopy model ID 'Electron microscopy model ID' SubClassOf 'is identifier of' some 'Electron microscopy model' 'Electron microscopy model ID' SubClassOf 'is identifier of' some http://edamontology.org/data_3805 http://edamontology.org/operation_3441 Plotting 'Plotting' SubClassOf 'Visualisation' 'Plotting' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/operation_2935 Wave graph plotting 'Wave graph plotting' SubClassOf 'Plotting' 'Wave graph plotting' SubClassOf 'Expression data rendering' http://edamontology.org/operation_2934 Cluster textual view generation 'Cluster textual view generation' SubClassOf 'Plotting' 'Cluster textual view generation' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/operation_0301 Sequence-to-3D-profile alignment 'Sequence-to-3D-profile alignment' SubClassOf 'has input' some 'Structural profile' 'Sequence-to-3D-profile alignment' SubClassOf 'has output' some 'Sequence-structure alignment' 'Sequence-to-3D-profile alignment' SubClassOf 'Protein fold recognition' 'Sequence-to-3D-profile alignment' SubClassOf 'Alignment' 'Sequence-to-3D-profile alignment' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/operation_0302 Protein threading 'Protein threading' SubClassOf 'Alignment' http://edamontology.org/operation_2963 Codon usage bias plotting 'Codon usage bias plotting' SubClassOf 'Plotting' 'Codon usage bias plotting' SubClassOf 'Sequence visualisation' http://edamontology.org/operation_0303 Protein fold recognition 'Protein fold recognition' SubClassOf 'Alignment' http://edamontology.org/operation_0310 Sequence assembly 'Sequence assembly' SubClassOf 'Assembly' 'Sequence assembly' SubClassOf 'Sequence analysis' http://edamontology.org/operation_2940 Scatter plot plotting 'Scatter plot plotting' SubClassOf 'Plotting' 'Scatter plot plotting' SubClassOf 'Visualisation' http://edamontology.org/operation_2943 Box-Whisker plot plotting 'Box-Whisker plot plotting' SubClassOf 'Plotting' 'Box-Whisker plot plotting' SubClassOf 'Visualisation' http://edamontology.org/operation_2939 Principal component plotting 'Principal component plotting' SubClassOf 'Plotting' 'Principal component plotting' SubClassOf 'Visualisation' http://edamontology.org/operation_2936 Dendrograph plotting 'Dendrograph plotting' SubClassOf 'Expression data rendering' 'Dendrograph plotting' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/operation_2949 Protein interaction analysis 'Protein interaction analysis' SubClassOf 'Protein analysis' 'Protein interaction analysis' SubClassOf 'Protein function analysis' http://edamontology.org/operation_0477 Protein modelling 'Protein modelling' SubClassOf 'Protein structure analysis' http://edamontology.org/operation_3503 Incident curve plotting 'Incident curve plotting' SubClassOf 'Plotting' 'Incident curve plotting' SubClassOf 'Visualisation' http://edamontology.org/operation_0475 Nucleic acid structure prediction 'Nucleic acid structure prediction' SubClassOf 'Structure prediction' 'Nucleic acid structure prediction' SubClassOf 'Prediction and recognition (nucleic acid)' 'Nucleic acid structure prediction' SubClassOf 'Nucleic acid sequence analysis' 'Nucleic acid structure prediction' SubClassOf 'Prediction and recognition' 'Nucleic acid structure prediction' SubClassOf 'Nucleic acid structure analysis' http://edamontology.org/operation_0473 GPCR analysis 'GPCR analysis' SubClassOf 'has topic' some 'Membrane and lipoproteins' 'GPCR analysis' SubClassOf 'Transmembrane protein analysis' 'GPCR analysis' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/operation_0474 Protein structure prediction 'Protein structure prediction' SubClassOf 'Structure prediction' 'Protein structure prediction' SubClassOf 'Protein analysis' 'Protein structure prediction' SubClassOf 'Prediction and recognition (protein)' 'Protein structure prediction' SubClassOf 'Protein structure analysis' 'Protein structure prediction' SubClassOf 'Prediction and recognition' http://edamontology.org/operation_0472 GPCR prediction 'GPCR prediction' SubClassOf 'GPCR analysis' 'GPCR prediction' SubClassOf 'Transmembrane protein prediction' 'GPCR prediction' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/operation_0442 Transcription regulatory element prediction (RNA-cis) 'Transcription regulatory element prediction (RNA-cis)' SubClassOf 'Regulatory element prediction' 'Transcription regulatory element prediction (RNA-cis)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/operation_1777 Protein function prediction 'Protein function prediction' SubClassOf 'Prediction and recognition (protein)' 'Protein function prediction' SubClassOf 'Prediction and recognition' http://edamontology.org/operation_0456 Nucleic acid melting profile plotting 'Nucleic acid melting profile plotting' SubClassOf 'Plotting' 'Nucleic acid melting profile plotting' SubClassOf 'Visualisation' http://edamontology.org/operation_0452 Indel detection 'Indel detection' SubClassOf 'Nucleic acid sequence analysis' http://edamontology.org/operation_0489 Genetic code prediction 'Genetic code prediction' SubClassOf 'Prediction and recognition (nucleic acid)' 'Genetic code prediction' SubClassOf 'Prediction and recognition' http://edamontology.org/operation_0484 SNP detection 'SNP detection' SubClassOf 'Nucleic acid sequence analysis' 'SNP detection' SubClassOf 'Nucleic acid feature detection' http://edamontology.org/operation_0497 Constrained sequence alignment 'Constrained sequence alignment' SubClassOf 'Sequence alignment' 'Constrained sequence alignment' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/operation_0490 Dotplot plotting 'Dotplot plotting' SubClassOf 'Plotting' http://edamontology.org/operation_2284 Nucleic acid density plotting 'Nucleic acid density plotting' SubClassOf 'Plotting' 'Nucleic acid density plotting' SubClassOf 'Sequence visualisation' http://edamontology.org/operation_0433 Splice site prediction 'Splice site prediction' SubClassOf 'Nucleic acid feature detection' 'Splice site prediction' SubClassOf 'Gene prediction' http://edamontology.org/operation_0434 Integrated gene prediction 'Integrated gene prediction' SubClassOf 'Gene prediction' 'Integrated gene prediction' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/operation_0402 Protein titration curve plotting 'Protein titration curve plotting' SubClassOf 'Plotting' 'Protein titration curve plotting' SubClassOf 'Visualisation' http://edamontology.org/operation_0415 Nucleic acid feature detection 'Nucleic acid feature detection' SubClassOf 'Prediction and recognition (nucleic acid)' 'Nucleic acid feature detection' SubClassOf 'Prediction and recognition' http://edamontology.org/operation_0407 Protein hydrophobic moment plotting 'Protein hydrophobic moment plotting' SubClassOf 'Plotting' 'Protein hydrophobic moment plotting' SubClassOf 'Sequence visualisation' http://edamontology.org/operation_3219 Read pre-processing 'Read pre-processing' SubClassOf 'Nucleic acid sequence analysis' http://edamontology.org/operation_3227 Variant calling 'Variant calling' SubClassOf 'Genetic variation analysis' 'Variant calling' SubClassOf 'Polymorphism detection' http://edamontology.org/operation_3206 Methylation level analysis (global) 'Methylation level analysis (global)' SubClassOf 'Methylation calling' 'Methylation level analysis (global)' SubClassOf 'Methylation analysis' http://edamontology.org/operation_3205 Methylation calling 'Methylation calling' SubClassOf 'Physical mapping' 'Methylation calling' SubClassOf 'Methylation analysis' 'Methylation calling' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/operation_3207 Methylation level analysis (gene-specific) 'Methylation level analysis (gene-specific)' SubClassOf 'Methylation calling' 'Methylation level analysis (gene-specific)' SubClassOf 'Methylation analysis' http://edamontology.org/operation_3202 Polymorphism detection 'Polymorphism detection' SubClassOf 'Nucleic acid feature detection' http://edamontology.org/operation_3201 SNP calling 'SNP calling' SubClassOf 'SNP detection' 'SNP calling' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/operation_3232 Gene expression QTL analysis 'Gene expression QTL analysis' SubClassOf 'Gene expression analysis' 'Gene expression QTL analysis' SubClassOf 'Gene expression profiling' http://edamontology.org/operation_3186 Bisulfite mapping 'Bisulfite mapping' SubClassOf http://edamontology.org/operation_3809 http://edamontology.org/operation_3197 Genetic variation analysis 'Genetic variation analysis' SubClassOf 'Nucleic acid feature detection' 'Genetic variation analysis' SubClassOf 'Analysis' http://edamontology.org/operation_0266 Vector sequence detection 'Vector sequence detection' SubClassOf 'Sequence comparison' http://edamontology.org/operation_0267 Protein secondary structure prediction 'Protein secondary structure prediction' SubClassOf 'Prediction and recognition (protein)' 'Protein secondary structure prediction' SubClassOf 'Prediction and recognition' 'Protein secondary structure prediction' SubClassOf 'Protein secondary structure analysis' http://edamontology.org/operation_0262 Nucleic acid property calculation 'Nucleic acid property calculation' SubClassOf 'Nucleic acid sequence analysis' http://edamontology.org/operation_0279 Nucleic acid folding analysis 'Nucleic acid folding analysis' SubClassOf 'Prediction and recognition (nucleic acid)' 'Nucleic acid folding analysis' SubClassOf 'Prediction and recognition' http://edamontology.org/operation_0277 Protein interaction network comparison 'Protein interaction network comparison' SubClassOf 'Protein interaction network analysis' 'Protein interaction network comparison' SubClassOf 'Protein function comparison' 'Protein interaction network comparison' SubClassOf 'Pathway or network analysis' http://edamontology.org/operation_0271 Structure prediction 'Structure prediction' SubClassOf 'has topic' some 'Structure prediction' 'Structure prediction' SubClassOf 'has output' some 'Structure' 'Structure prediction' SubClassOf 'Prediction and recognition' 'Structure prediction' SubClassOf 'Structure analysis' 'Structure prediction' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/operation_0270 Transmembrane protein analysis 'Transmembrane protein analysis' SubClassOf 'Protein analysis' 'Transmembrane protein analysis' SubClassOf 'Analysis' http://edamontology.org/operation_0273 Protein interaction raw data analysis 'Protein interaction raw data analysis' SubClassOf 'Protein interaction analysis' 'Protein interaction raw data analysis' SubClassOf 'has input' some 'Protein interaction raw data' 'Protein interaction raw data analysis' SubClassOf 'has topic' some 'Protein interactions' 'Protein interaction raw data analysis' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/operation_0242 Conserved transcription regulatory sequence identification 'Conserved transcription regulatory sequence identification' SubClassOf 'Regulatory element prediction' 'Conserved transcription regulatory sequence identification' SubClassOf 'Nucleic acid feature detection' 'Conserved transcription regulatory sequence identification' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/operation_0250 Protein property calculation 'Protein property calculation' SubClassOf 'Prediction and recognition (protein)' 'Protein property calculation' SubClassOf 'Protein analysis' 'Protein property calculation' SubClassOf 'Prediction and recognition' http://edamontology.org/operation_0287 Base position variability plotting 'Base position variability plotting' SubClassOf 'Plotting' 'Base position variability plotting' SubClassOf 'Sequence visualisation' http://edamontology.org/operation_0299 3D profile-to-3D profile alignment '3D profile-to-3D profile alignment' SubClassOf 'Structure alignment' '3D profile-to-3D profile alignment' SubClassOf 'has input' some 'Structural profile' '3D profile-to-3D profile alignment' SubClassOf 'has output' some 'Structural (3D) profile alignment' '3D profile-to-3D profile alignment' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/operation_0298 Profile-profile alignment 'Profile-profile alignment' SubClassOf 'has topic' some 'Sequence sites, features and motifs' 'Profile-profile alignment' SubClassOf 'Sequence alignment' 'Profile-profile alignment' SubClassOf 'has input' some 'Sequence profile' 'Profile-profile alignment' SubClassOf 'has output' some 'Profile-profile alignment' 'Profile-profile alignment' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/operation_3350 Protein quaternary structure prediction 'Protein quaternary structure prediction' SubClassOf 'Protein structure prediction' 'Protein quaternary structure prediction' SubClassOf 'Prediction and recognition' http://edamontology.org/operation_3283 Anonymisation 'Anonymisation' SubClassOf 'Operation' 'Anonymisation' SubClassOf 'Data handling' http://edamontology.org/operation_2502 Protein analysis 'Protein analysis' SubClassOf 'Analysis' 'Protein analysis' SubClassOf 'has topic' some 'Proteomics' 'Protein analysis' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/operation_2501 Nucleic acid analysis 'Nucleic acid analysis' SubClassOf 'Analysis' 'Nucleic acid analysis' SubClassOf 'has topic' some 'Nucleic acids' 'Nucleic acid analysis' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/operation_2514 Sequence generation (protein) 'Sequence generation (protein)' SubClassOf 'Protein analysis' http://edamontology.org/operation_3024 Prediction and recognition (nucleic acid) 'Prediction and recognition (nucleic acid)' SubClassOf 'Prediction and recognition' 'Prediction and recognition (nucleic acid)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/operation_3023 Prediction and recognition (protein) 'Prediction and recognition (protein)' SubClassOf 'Prediction and recognition' 'Prediction and recognition (protein)' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/data_0941 Electron microscopy model 'Electron microscopy model' SubClassOf 'has topic' some 'Structural biology' 'Electron microscopy model' SubClassOf 'Structure' 'Electron microscopy model' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/operation_3094 Protein interaction network prediction 'Protein interaction network prediction' SubClassOf 'has topic' some 'Protein interactions' 'Protein interaction network prediction' SubClassOf 'Pathway or network prediction' 'Protein interaction network prediction' SubClassOf 'has output' some 'Protein interaction report' 'Protein interaction network prediction' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/operation_3092 Protein feature detection 'Protein feature detection' SubClassOf 'Protein analysis' 'Protein feature detection' SubClassOf 'Prediction and recognition (protein)' 'Protein feature detection' SubClassOf 'Prediction and recognition' 'Protein feature detection' SubClassOf 'has topic' some 'Proteins' 'Protein feature detection' SubClassOf 'Protein sequence analysis' http://edamontology.org/operation_0572 Protein interaction network rendering Protein interaction network visualisation 'Protein interaction network rendering' SubClassOf 'Pathway or network visualisation' 'Protein interaction network rendering' SubClassOf 'has topic' some 'Protein interactions' 'Protein interaction network rendering' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/operation_0571 Expression data rendering 'Expression data rendering' SubClassOf 'Plotting' http://edamontology.org/operation_3649 Target-Decoy 'Target-Decoy' SubClassOf 'Validation of peptide-spectrum matches' 'Target-Decoy' SubClassOf 'Validation' 'Target-Decoy' SubClassOf 'Peptide database search' http://edamontology.org/operation_3648 Validation of peptide-spectrum matches 'Validation of peptide-spectrum matches' SubClassOf 'Validation' 'Validation of peptide-spectrum matches' SubClassOf 'Peptide database search' 'Validation of peptide-spectrum matches' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/operation_3675 Variant filtering 'Variant filtering' SubClassOf 'Nucleic acid sequence analysis' http://edamontology.org/operation_1850 Protein cysteine and disulfide bond assignment 'Protein cysteine and disulfide bond assignment' SubClassOf 'Prediction and recognition (protein)' 'Protein cysteine and disulfide bond assignment' SubClassOf 'Protein structure assignment' http://edamontology.org/operation_2406 Protein structure analysis 'Protein structure analysis' SubClassOf 'Protein analysis' http://edamontology.org/operation_2414 Protein function analysis 'Protein function analysis' SubClassOf 'Protein analysis' 'Protein function analysis' SubClassOf 'Analysis' 'Protein function analysis' SubClassOf 'has topic' some 'Proteins' http://edamontology.org/operation_2416 Protein secondary structure analysis 'Protein secondary structure analysis' SubClassOf 'Protein analysis' 'Protein secondary structure analysis' SubClassOf 'Protein structure analysis' http://edamontology.org/operation_2415 Protein folding analysis 'Protein folding analysis' SubClassOf 'Protein analysis' 'Protein folding analysis' SubClassOf 'Protein structure analysis' http://edamontology.org/operation_2457 GPCR coupling selectivity prediction 'GPCR coupling selectivity prediction' SubClassOf 'Protein property calculation' 'GPCR coupling selectivity prediction' SubClassOf 'has output' some 'Protein report' 'GPCR coupling selectivity prediction' SubClassOf 'Protein interaction prediction' 'GPCR coupling selectivity prediction' SubClassOf 'GPCR analysis' 'GPCR coupling selectivity prediction' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/operation_2419 Primer and probe design 'Primer and probe design' SubClassOf 'Prediction and recognition (nucleic acid)' 'Primer and probe design' SubClassOf 'Prediction and recognition' http://edamontology.org/operation_2436 Gene-set enrichment analysis 'Gene-set enrichment analysis' SubClassOf 'Gene expression analysis' http://edamontology.org/operation_3767 Protein identification 'Protein identification' SubClassOf 'Protein analysis' 'Protein identification' SubClassOf 'Prediction and recognition' http://edamontology.org/operation_2437 Gene regulatory network prediction 'Gene regulatory network prediction' SubClassOf 'has output' some 'Pathway or network report' 'Gene regulatory network prediction' SubClassOf 'Pathway or network prediction' 'Gene regulatory network prediction' SubClassOf 'has topic' some 'Molecular interactions, pathways and networks' 'Gene regulatory network prediction' SubClassOf 'Prediction and recognition (nucleic acid)' 'Gene regulatory network prediction' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/operation_2489 Protein subcellular localisation prediction 'Protein subcellular localisation prediction' SubClassOf 'Prediction and recognition (protein)' http://edamontology.org/operation_2481 Nucleic acid structure analysis 'Nucleic acid structure analysis' SubClassOf 'Nucleic acid analysis' http://edamontology.org/operation_2487 Protein structure comparison 'Protein structure comparison' SubClassOf 'Protein analysis' 'Protein structure comparison' SubClassOf 'Protein structure analysis' http://edamontology.org/operation_2499 Splicing model analysis 'Splicing model analysis' SubClassOf 'Prediction and recognition (nucleic acid)' 'Splicing model analysis' SubClassOf 'Sequence comparison' 'Splicing model analysis' SubClassOf 'Sequence analysis' 'Splicing model analysis' SubClassOf 'Prediction and recognition' http://edamontology.org/operation_2492 Protein interaction prediction 'Protein interaction prediction' SubClassOf 'Protein analysis' 'Protein interaction prediction' SubClassOf 'Prediction and recognition (protein)' 'Protein interaction prediction' SubClassOf 'Protein function prediction' 'Protein interaction prediction' SubClassOf 'Protein interaction analysis' http://edamontology.org/operation_3797 Rarefaction 'Rarefaction' SubClassOf 'Operation' 'Rarefaction' SubClassOf 'Calculation' http://edamontology.org/operation_2464 Protein-protein interaction prediction 'Protein-protein interaction prediction' SubClassOf 'Protein function prediction' http://edamontology.org/operation_2479 Protein sequence analysis 'Protein sequence analysis' SubClassOf 'Protein analysis' 'Protein sequence analysis' SubClassOf 'has topic' some 'Proteins' http://edamontology.org/operation_2478 Nucleic acid sequence analysis 'Nucleic acid sequence analysis' SubClassOf 'Nucleic acid analysis' http://edamontology.org/operation_2475 Protein architecture recognition 'Protein architecture recognition' SubClassOf 'Prediction and recognition (protein)' 'Protein architecture recognition' SubClassOf 'Prediction and recognition' http://edamontology.org/operation_3809 Differentially-methylated region identification 'Differentially-methylated region identification' SubClassOf 'Methylation analysis' http://edamontology.org/data_3805 3D EM Map '3D EM Map' SubClassOf 'has topic' some 'Structural biology' '3D EM Map' SubClassOf 'Structure' http://edamontology.org/data_3806 3D EM Mask '3D EM Mask' SubClassOf 'Structure' '3D EM Mask' SubClassOf 'has topic' some 'Structural biology' http://edamontology.org/data_3807 EM Movie 'EM Movie' SubClassOf 'Raw image' 'EM Movie' SubClassOf 'has topic' some 'Structural biology' http://edamontology.org/data_3808 EM Micrograph 'EM Micrograph' SubClassOf 'has topic' some 'Structural biology' 'EM Micrograph' SubClassOf 'Raw image'