52 54 3 http://edamontology.org/operation_3431 Deposition 'Deposition' SubClassOf 'has topic' some 'Data submission, annotation and curation' http://edamontology.org/topic_3303 Medicine 'Medicine' SubClassOf 'Topic' 'Medicine' SubClassOf http://edamontology.org/topic_4019 http://edamontology.org/topic_3307 Computational biology 'Computational biology' SubClassOf 'Topic' 'Computational biology' SubClassOf http://edamontology.org/topic_4019 http://edamontology.org/topic_3344 Biomedical science 'Biomedical science' SubClassOf 'Topic' 'Biomedical science' SubClassOf http://edamontology.org/topic_4019 http://edamontology.org/topic_3361 Laboratory techniques 'Laboratory techniques' SubClassOf 'Topic' 'Laboratory techniques' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/topic_3382 Imaging 'Imaging' SubClassOf 'Laboratory techniques' 'Imaging' SubClassOf 'Data acquisition' http://edamontology.org/topic_3391 Omics 'Omics' SubClassOf 'Topic' 'Omics' SubClassOf http://edamontology.org/topic_4019 http://edamontology.org/format_3981 TAR format 'TAR format' SubClassOf 'is format of' some 'Data' http://edamontology.org/format_3989 GZIP format 'GZIP format' SubClassOf 'is format of' some 'Data' http://edamontology.org/format_3987 ZIP format 'ZIP format' SubClassOf 'is format of' some 'Data' http://edamontology.org/format_3977 ObjTables 'ObjTables' SubClassOf 'is format of' some 'Data' http://edamontology.org/format_3973 Docker image format 'Docker image format' SubClassOf 'Raw sequence format' http://edamontology.org/topic_0153 Lipids 'Lipids' SubClassOf 'Metabolomics' http://edamontology.org/topic_0199 Genetic variation 'Genetic variation' SubClassOf 'Genomics' http://edamontology.org/topic_3263 Data security 'Data security' SubClassOf 'Biological databases' 'Data security' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/data_2913 Virus identifier 'Virus identifier' SubClassOf 'Organism identifier' 'Virus identifier' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/topic_3168 Sequencing 'Sequencing' SubClassOf 'Laboratory techniques' 'Sequencing' SubClassOf 'Data acquisition' http://edamontology.org/operation_0224 Query and retrieval 'Query and retrieval' SubClassOf 'has output' some 'Data' 'Query and retrieval' SubClassOf 'has topic' some 'Biological databases' http://edamontology.org/operation_0256 Sequence feature comparison 'Sequence feature comparison' SubClassOf 'has input' some 'Feature table' 'Sequence feature comparison' SubClassOf 'has input' some 'Sequence record' 'Sequence feature comparison' SubClassOf 'has input' some 'Sequence features' http://edamontology.org/topic_3934 Cytometry 'Cytometry' SubClassOf 'Laboratory techniques' 'Cytometry' SubClassOf 'Data acquisition' http://edamontology.org/topic_3940 Chromosome conformation capture 'Chromosome conformation capture' SubClassOf 'Laboratory techniques' 'Chromosome conformation capture' SubClassOf 'Data acquisition' http://edamontology.org/topic_3957 Protein interaction experiment 'Protein interaction experiment' SubClassOf 'Laboratory techniques' 'Protein interaction experiment' SubClassOf 'Data acquisition' http://edamontology.org/topic_3974 Epistasis 'Epistasis' SubClassOf 'Genomics' 'Epistasis' SubClassOf 'Epigenetics' 'Epistasis' SubClassOf 'Genotype and phenotype' http://edamontology.org/operation_3357 Format detection 'Format detection' SubClassOf 'has input' some 'Data' http://edamontology.org/topic_3077 Data acquisition 'Data acquisition' SubClassOf 'Biological databases' 'Data acquisition' SubClassOf 'Topic' http://edamontology.org/topic_3071 Biological databases 'Biological databases' SubClassOf 'Informatics' 'Biological databases' SubClassOf 'Topic' http://edamontology.org/topic_3070 Biology 'Biology' SubClassOf 'Topic' 'Biology' SubClassOf http://edamontology.org/topic_4019 http://edamontology.org/data_2785 Virus ID 'Virus ID' SubClassOf 'Virus identifier' 'Virus ID' SubClassOf 'Organism accession' 'Virus ID' SubClassOf 'Identifier (by type of data)' http://edamontology.org/format_4004 SimTools repertoire file format 'SimTools repertoire file format' SubClassOf 'is format of' some 'Data' http://edamontology.org/format_4005 Configuration file format 'Configuration file format' SubClassOf 'is format of' some 'Data' http://edamontology.org/format_4002 pickle 'pickle' SubClassOf 'is format of' some 'Data' http://edamontology.org/format_4003 NumPy format 'NumPy format' SubClassOf 'is format of' some 'Data' http://edamontology.org/format_4001 NIFTI format 'NIFTI format' SubClassOf 'Binary format' 'NIFTI format' SubClassOf 'Image format' 'NIFTI format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/format_4006 Zstandard format 'Zstandard format' SubClassOf 'is format of' some 'Data' http://edamontology.org/topic_3855 Environmental science 'Environmental science' SubClassOf 'Biology' 'Environmental science' SubClassOf 'Topic' http://edamontology.org/data_2751 GenomeReviews ID 'GenomeReviews ID' SubClassOf 'Genome accession' 'GenomeReviews ID' SubClassOf 'Accession' 'GenomeReviews ID' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/topic_0610 Ecology 'Ecology' SubClassOf 'Biology' 'Ecology' SubClassOf http://edamontology.org/topic_4019 'Ecology' SubClassOf 'Environmental science' http://edamontology.org/topic_3656 Immunoprecipitation experiment 'Immunoprecipitation experiment' SubClassOf 'Laboratory techniques' 'Immunoprecipitation experiment' SubClassOf 'Data acquisition' http://edamontology.org/operation_3931 Chemometrics 'Chemometrics' SubClassOf 'Cheminformatics' http://edamontology.org/operation_3939 Metabolic engineering 'Metabolic engineering' SubClassOf 'Biotechnology' http://edamontology.org/operation_3923 Genome resequencing 'Genome resequencing' SubClassOf 'Sequencing' http://edamontology.org/operation_1812 Parsing 'Parsing' SubClassOf 'has input' some 'Identifier' http://edamontology.org/format_3700 Tabix index file format 'Tabix index file format' SubClassOf 'Data index format' 'Tabix index file format' SubClassOf 'Binary format' 'Tabix index file format' SubClassOf 'is format of' some 'Data index' 'Tabix index file format' SubClassOf http://www.w3.org/2002/07/owl#DeprecatedClass http://edamontology.org/format_3681 mzTab 'mzTab' SubClassOf 'has topic' some 'Proteomics' http://edamontology.org/topic_3519 PCR experiment 'PCR experiment' SubClassOf 'Laboratory techniques' 'PCR experiment' SubClassOf 'Data acquisition' http://edamontology.org/topic_3518 Microarray experiment 'Microarray experiment' SubClassOf 'Laboratory techniques' 'Microarray experiment' SubClassOf 'Data acquisition' http://edamontology.org/topic_3516 Genotyping experiment 'Genotyping experiment' SubClassOf 'Laboratory techniques' 'Genotyping experiment' SubClassOf 'Data acquisition' http://edamontology.org/topic_3520 Proteomics experiment 'Proteomics experiment' SubClassOf 'Laboratory techniques' 'Proteomics experiment' SubClassOf 'Data acquisition' http://edamontology.org/topic_3524 Simulation experiment 'Simulation experiment' SubClassOf 'Laboratory techniques' 'Simulation experiment' SubClassOf 'Data acquisition' http://edamontology.org/topic_3523 RNAi experiment 'RNAi experiment' SubClassOf 'Laboratory techniques' 'RNAi experiment' SubClassOf 'Data acquisition' http://edamontology.org/topic_3489 Database management 'Database management' SubClassOf 'Biological databases' 'Database management' SubClassOf 'Informatics' http://edamontology.org/format_3616 tabix 'tabix' SubClassOf 'Image format' 'tabix' SubClassOf 'Data index format' 'tabix' SubClassOf 'is format of' some 'Data index' http://edamontology.org/data_4040 Data management plan 'Data management plan' SubClassOf 'has topic' some 'Data management' 'Data management plan' SubClassOf 'Data' http://edamontology.org/topic_3923 Genome resequencing 'Genome resequencing' SubClassOf 'Sequencing' http://edamontology.org/topic_3939 Metabolic engineering 'Metabolic engineering' SubClassOf 'Biotechnology' http://edamontology.org/topic_3931 Chemometrics 'Chemometrics' SubClassOf 'Cheminformatics' http://edamontology.org/data_4022 ORCID Identifier 'ORCID Identifier' SubClassOf 'Author ID' http://edamontology.org/format_4015 PEtab 'PEtab' SubClassOf 'is format of' some 'Simulation' 'PEtab' SubClassOf 'TSV' http://edamontology.org/format_4018 gVCF 'gVCF' SubClassOf 'VCF' http://edamontology.org/format_4041 maDMP 'maDMP' SubClassOf 'JSON' 'maDMP' SubClassOf 'is format of' some 'Data management plan' http://edamontology.org/format_4035 PQR 'PQR' SubClassOf 'PDB database entry format' 'PQR' SubClassOf 'Textual format' http://edamontology.org/format_4036 PDBQT 'PDBQT' SubClassOf 'Textual format' 'PDBQT' SubClassOf 'PDB database entry format' http://edamontology.org/format_4039 MSP 'MSP' SubClassOf 'Mass spectrometry data format' 'MSP' SubClassOf 'Textual format' http://edamontology.org/format_4026 BioSimulators standard for command-line interfaces for biosimulation tools 'BioSimulators standard for command-line interfaces for biosimulation tools' SubClassOf 'Textual format' http://edamontology.org/format_4024 cif 'cif' SubClassOf 'Chemical data format' 'cif' SubClassOf 'is format of' some 'Structure' http://edamontology.org/format_4025 BioSimulators format for the specifications of biosimulation tools 'BioSimulators format for the specifications of biosimulation tools' SubClassOf 'JSON' http://edamontology.org/format_4023 cml 'cml' SubClassOf 'Chemical data format' 'cml' SubClassOf 'XML' http://edamontology.org/topic_4060 Metaproteomics 'Metaproteomics' SubClassOf 'Proteomics' http://edamontology.org/operation_4031 Power test 'Power test' SubClassOf 'has input' some 'Evidence' 'Power test' SubClassOf 'has output' some 'Statistical estimate score' 'Power test' SubClassOf 'Statistical calculation' 'Power test' SubClassOf 'has topic' some 'Data architecture, analysis and design' 'Power test' SubClassOf 'has topic' some 'Data quality management' 'Power test' SubClassOf 'has topic' some 'Statistics and probability' http://edamontology.org/operation_4032 DNA modification prediction 'DNA modification prediction' SubClassOf 'has input' some 'DNA sequence' 'DNA modification prediction' SubClassOf 'Nucleic acid feature detection' 'DNA modification prediction' SubClassOf 'has output' some 'Nucleic acid features' 'DNA modification prediction' SubClassOf 'has topic' some 'Sequence sites, features and motifs' 'DNA modification prediction' SubClassOf 'has output' some 'Score' 'DNA modification prediction' SubClassOf 'has topic' some 'Epigenetics' http://edamontology.org/operation_4033 Disease transmission analysis 'Disease transmission analysis' SubClassOf 'has topic' some 'Infectious disease' 'Disease transmission analysis' SubClassOf 'has topic' some 'Public health and epidemiology' 'Disease transmission analysis' SubClassOf 'Data analysis' 'Disease transmission analysis' SubClassOf 'Modelling and simulation' 'Disease transmission analysis' SubClassOf 'Statistical modelling' 'Disease transmission analysis' SubClassOf 'has output' some 'Report' http://edamontology.org/operation_4034 Multiple testing correction 'Multiple testing correction' SubClassOf 'Statistical calculation' 'Multiple testing correction' SubClassOf 'has input' some 'P-value' 'Multiple testing correction' SubClassOf 'has topic' some 'Statistics and probability' 'Multiple testing correction' SubClassOf 'has output' some 'Q-value' http://edamontology.org/operation_4042 Data management planning 'Data management planning' SubClassOf 'Operation' 'Data management planning' SubClassOf 'has output' some 'Data management plan' 'Data management planning' SubClassOf 'has topic' some 'Data management' http://edamontology.org/operation_4043 Data digitisation 'Data digitisation' SubClassOf 'Data handling' 'Data digitisation' SubClassOf 'has topic' some 'Data rescue' http://edamontology.org/topic_4012 FAIR data 'FAIR data' SubClassOf 'Data management' 'FAIR data' SubClassOf 'Open science' http://edamontology.org/topic_4011 Data rescue 'Data rescue' SubClassOf 'Data management' http://edamontology.org/topic_4010 Open science 'Open science' SubClassOf 'Topic' http://edamontology.org/topic_4016 Electrocardiography 'Electrocardiography' SubClassOf 'Physiology' 'Electrocardiography' SubClassOf 'Imaging' http://edamontology.org/topic_4014 Electroencephalography 'Electroencephalography' SubClassOf 'Physiology' 'Electroencephalography' SubClassOf 'Imaging' http://edamontology.org/topic_4013 Antimicrobial resistance 'Antimicrobial resistance' SubClassOf 'Microbiology' 'Antimicrobial resistance' SubClassOf 'Infectious disease' http://edamontology.org/topic_4019 Biosciences 'Biosciences' SubClassOf 'Topic' http://edamontology.org/topic_4017 Cryogenic electron microscopy 'Cryogenic electron microscopy' SubClassOf 'Electron microscopy' http://edamontology.org/topic_4021 Multiomics 'Multiomics' SubClassOf 'Omics' http://edamontology.org/topic_4020 Carbon cycle 'Carbon cycle' SubClassOf 'Physics' 'Carbon cycle' SubClassOf 'Ecology' 'Carbon cycle' SubClassOf 'Chemistry' 'Carbon cycle' SubClassOf 'Environmental sciences' http://edamontology.org/topic_4027 Ribosome Profiling 'Ribosome Profiling' SubClassOf 'Transcriptomics' http://edamontology.org/topic_4029 Acoustics 'Acoustics' SubClassOf 'Physics' http://edamontology.org/topic_4028 Single-cell sequencing 'Single-cell sequencing' SubClassOf 'Sequencing' http://edamontology.org/topic_4038 Metabarcoding 'Metabarcoding' SubClassOf 'Sequence analysis' 'Metabarcoding' SubClassOf 'Microbial ecology' 'Metabarcoding' SubClassOf http://www.w3.org/2004/02/skos/core#related some 'Genome resequencing' http://edamontology.org/topic_4037 Genomic imprinting 'Genomic imprinting' SubClassOf 'Epigenetics' http://edamontology.org/topic_4030 Microfluidics 'Microfluidics' SubClassOf 'Biotechnology' 'Microfluidics' SubClassOf 'Physics' 'Microfluidics' SubClassOf 'Biochemistry' http://edamontology.org/topic_4045 Cybersecurity 'Cybersecurity' SubClassOf 'Informatics' http://edamontology.org/topic_4044 Data protection 'Data protection' SubClassOf 'Data management' http://edamontology.org/topic_4047 Software management 'Software management' SubClassOf 'Informatics' http://edamontology.org/topic_4046 Version control 'Version control' SubClassOf 'Informatics' http://edamontology.org/topic_4056 Long-read sequencing 'Long-read sequencing' SubClassOf 'Sequencing' http://edamontology.org/topic_4055 siRNA experiment 'siRNA experiment' SubClassOf 'RNAi experiment' http://edamontology.org/topic_4054 miRNA silencing 'miRNA silencing' SubClassOf 'RNAi experiment' http://edamontology.org/topic_4053 ATAC-seq 'ATAC-seq' SubClassOf 'Chromosome conformation capture' http://edamontology.org/topic_4057 Short-read sequencing 'Short-read sequencing' SubClassOf 'Sequencing' http://edamontology.org/topic_4052 Hi-C 'Hi-C' SubClassOf 'Chromosome conformation capture' http://edamontology.org/topic_4051 ChIP-exo 'ChIP-exo' SubClassOf 'Sequencing' http://edamontology.org/format_4059 mzTab-L 'mzTab-L' SubClassOf 'mzTab-M' 'mzTab-L' SubClassOf 'has topic' some 'Lipidomics' http://edamontology.org/format_4058 mzTab-M 'mzTab-M' SubClassOf 'Textual format' 'mzTab-M' SubClassOf 'has topic' some 'Metabolomics' 'mzTab-M' SubClassOf 'Mass spectrometry data format' http://edamontology.org/format_4050 SDRF 'SDRF' SubClassOf 'Experiment annotation format' 'SDRF' SubClassOf 'is format of' some 'Protocol' 'SDRF' SubClassOf 'TSV' http://edamontology.org/format_4048 Nextflow 'Nextflow' SubClassOf 'Textual format' 'Nextflow' SubClassOf 'Workflow format' http://edamontology.org/format_4049 Snakemake 'Snakemake' SubClassOf 'Textual format' 'Snakemake' SubClassOf 'Workflow format' http://edamontology.org/operation_3931 Chemometrics 'Chemometrics' SubClassOf 'Cheminformatics' http://edamontology.org/operation_3939 Metabolic engineering 'Metabolic engineering' SubClassOf 'Biotechnology' http://edamontology.org/operation_3923 Genome resequencing 'Genome resequencing' SubClassOf 'Sequencing'