Class ID,Preferred Label,Synonyms,Definitions,Obsolete,CUI,Semantic Types,Parents,alternative term,comment,definition,definition source,example of usage,has_alternative_id,has_broad_synonym,has_exact_synonym,has_narrow_synonym,has_related_synonym,http://data.bioontology.org/metadata/obo/part_of,http://data.bioontology.org/metadata/prefixIRI,http://data.bioontology.org/metadata/treeView,http://purl.org/dc/elements/1.1/description,http://purl.org/dc/elements/1.1/title,http://purl.org/dc/terms/license,IHCC browser label,IHCC category,inheres in,is about,label,part of,see also
http://purl.obolibrary.org/obo/MONDO_0005550,infectious disease,disease by infectious agent|transmissible disease|infectious diseases and manifestations|infectious disease|communicable disease|infectious disorder|clinical infection|ID|infection|infectious,"A disorder resulting from the presence and activity of a microbial, viral, or parasitic agent. It can be transmitted by direct or indirect contact.|Replaces 'infection' in disease hierarchy. OBI imported term infection is moved to pathologic process. This class is a container class for infectious diseases, not the process of infection itself.",false,,,http://purl.obolibrary.org/obo/MONDO_0000001,,"Replaces 'infection' in disease hierarchy. OBI imported term infection is moved to pathologic process. This class is a container class for infectious diseases, not the process of infection itself.","A disorder resulting from the presence and activity of a microbial, viral, or parasitic agent. It can be transmitted by direct or indirect contact.",,,,,transmissible disease|infectious diseases and manifestations|infectious disease|communicable disease|infectious disorder|clinical infection|ID|infection|infectious,,disease by infectious agent,,MONDO:0005550,,,,,infectious diseases,diseases,,,infectious disease,,
http://purl.obolibrary.org/obo/GECKO_0000019,blood collected from fasting subject,,Blood that is collected from an organism which has been fasting for a given amount of time.,false,,,http://purl.obolibrary.org/obo/UBERON_0000178,,,Blood that is collected from an organism which has been fasting for a given amount of time.,,,,,,,,,GECKO:0000019,,,,,fasting or non-fasting,blood,,,blood collected from fasting subject,,
http://purl.obolibrary.org/obo/UBERON_0001088,urine,,Excretion that is the output of a kidney,false,,,http://purl.obolibrary.org/obo/UBERON_0000463,,,Excretion that is the output of a kidney,,,,,,,,,UBERON:0001088,,,,,urine,sample type,,,urine,,
http://purl.obolibrary.org/obo/STATO_0000039,statistic,,a statistic is a measurement datum to describe a dataset or a variable. It is generated by a calculation on set of observed data.,false,,,http://purl.obolibrary.org/obo/IAO_0000109,,,a statistic is a measurement datum to describe a dataset or a variable. It is generated by a calculation on set of observed data.,"STATO, adapted from wikipedia (http://en.wikipedia.org/wiki/Statistic).","",,,,,,,STATO:0000039,,,,,,,,,statistic,,
http://purl.obolibrary.org/obo/GECKO_0000124,radiological treatment history,,"A non-pharmacological treatment history that is about use of radiology for treatment of disease, disorder, or symptom.",false,,,http://purl.obolibrary.org/obo/GECKO_0000091,,,"A non-pharmacological treatment history that is about use of radiology for treatment of disease, disorder, or symptom.",,,,,,,,,GECKO:0000124,,,,,radiological interventions,non-pharmacological interventions,,,radiological treatment history,,
http://purl.obolibrary.org/obo/GECKO_0000119,cognitive measurement,,"A psychological measurement of some aspect of intellectual functions such as memory, problem solving, and comprehension.",false,,,http://purl.obolibrary.org/obo/GECKO_0000118,,,"A psychological measurement of some aspect of intellectual functions such as memory, problem solving, and comprehension.",Wikipedia:Cognition,,,,,,,,GECKO:0000119,,,,,cognitive functioning,cognitive and psychological measurements,,,cognitive measurement,,
http://purl.obolibrary.org/obo/GECKO_0000140,congenital disorder,,A disorder that is present at birth due to genetics or environmental factors during development.,false,,,http://purl.obolibrary.org/obo/MONDO_0000001,,,A disorder that is present at birth due to genetics or environmental factors during development.,,,,,,,,,GECKO:0000140,,,,,congenital and genetic disorders,diseases,,,congenital disorder,,
http://purl.obolibrary.org/obo/EUPATH_0010032,environment associated with human dwelling,,environmental system associated with the dwelling used by humans.,false,,,http://purl.obolibrary.org/obo/BFO_0000040,,,environmental system associated with the dwelling used by humans.,Penn Group,,,,,,,,EUPATH:0010032,,,,,physical environment,questionnaire/survey data,,,environment associated with human dwelling,,
http://purl.obolibrary.org/obo/GECKO_0000006,population location,,A population data item that is about the geographical location of a population of organisms.,false,,,http://purl.obolibrary.org/obo/GECKO_0000005,,,A population data item that is about the geographical location of a population of organisms.,,,,,,,,,GECKO:0000006,,,,,location,population data,,http://purl.obolibrary.org/obo/BFO_0000029,population location,,
http://purl.obolibrary.org/obo/PDRO_0000024,drug prescription,,"A health care prescription specifying the initiation, modification or cessation of a drug administration.",false,,,http://purl.obolibrary.org/obo/IAO_0000310,,,"A health care prescription specifying the initiation, modification or cessation of a drug administration.",,"""Prescription for John Smith : Ativan 2mg tablets, take 1 tablet twice daily by mouth as needed if anxious, dispense 60 tablets, renew 12 times. Signed by Dr Hazard. Date: 15/10/29""",,,,,,,PDRO:0000024,,,,,prescription,medication,,,drug prescription,,
http://purl.obolibrary.org/obo/UBERON_0001836,saliva,saliva atomaris|saliva molecularis|sailva normalis|salivary gland secretion,"A fluid produced in the oral cavity by salivary glands, typically used in predigestion, but also in other functions.",false,,,http://purl.obolibrary.org/obo/UBERON_0000463,,,"A fluid produced in the oral cavity by salivary glands, typically used in predigestion, but also in other functions.",,,,,salivary gland secretion,,saliva atomaris|saliva molecularis|sailva normalis,,UBERON:0001836,,,,,saliva,sample type,,,saliva,,
http://purl.obolibrary.org/obo/MONDO_0005071,nervous system disorder,disorder of nervous system|nervous system disease or disorder|disorder of nervous system|neurologic disease|nervous system disorder|nervous system disease|disease or disorder of nervous system|disease of nervous system|neurologic disorder|neurological disease|neurological disorder,"A non-neoplastic or neoplastic disorder that affects the brain, spinal cord, or peripheral nerves.",false,,,http://purl.obolibrary.org/obo/MONDO_0000001,,,"A non-neoplastic or neoplastic disorder that affects the brain, spinal cord, or peripheral nerves.",,,,,nervous system disease or disorder|disorder of nervous system|neurologic disease|nervous system disorder|nervous system disease|disease or disorder of nervous system|disease of nervous system|neurologic disorder|neurological disease|neurological disorder,,disorder of nervous system,,MONDO:0005071,,,,,nervous system disorders,diseases,,,nervous system disorder,,
http://purl.obolibrary.org/obo/OBI_0000537,copy number variation profiling assay,,"An assay that determines lost or amplified genomic regions of DNA by comparing genomic DNA originating from tissues from the same or different individuals using specific techniques such as CGH, array CGH, SNP genotyping",false,,,http://purl.obolibrary.org/obo/GECKO_0000032,CNV analysis,,"An assay that determines lost or amplified genomic regions of DNA by comparing genomic DNA originating from tissues from the same or different individuals using specific techniques such as CGH, array CGH, SNP genotyping",,Profiling of copy number variations (CNVs) in healthy individuals from three ethnic groups using a human genome 32 K BAC-clone-based array. PMID:18058796,,,,,,,OBI:0000537,,,,,"Sequence variants (CNV, SNP arrays)",genomics,,,copy number variation profiling assay,,
http://purl.obolibrary.org/obo/CMO_0000106,body height data item,,,false,,,http://purl.obolibrary.org/obo/CMO_0000021,,,,,,,,,,,,CMO:0000106,,,,,height,anthropometry,,,body height data item,,
http://purl.obolibrary.org/obo/GECKO_0000134,Alzheimer's Disease Assessment Scale score,,A cognitive measurement that is an output (score) from the Alzheimer's Disease Assessment Scale.,false,,,http://purl.obolibrary.org/obo/GECKO_0000119,,,A cognitive measurement that is an output (score) from the Alzheimer's Disease Assessment Scale.,,,,,,,,,GECKO:0000134,,,,,ADAS,cognitive functioning,,,Alzheimer's Disease Assessment Scale score,,
http://purl.obolibrary.org/obo/GECKO_0000044,biosample size,,A count of the number of biosamples collected for an investigation.,false,,,http://purl.obolibrary.org/obo/STATO_0000047,,,A count of the number of biosamples collected for an investigation.,,,,,,,,,GECKO:0000044,,,,,sample size,biosample,,,biosample size,,
http://purl.obolibrary.org/obo/OBI_0302893,storage,,A maintenance process by which material entities that are not actively metabolizing are placed in well identified location and possibly under controlled environment in ad-hoc devices/structures in order to preserve and protect them from decay/alteration and maintain availability,false,,,http://purl.obolibrary.org/obo/OBI_0000011,,,A maintenance process by which material entities that are not actively metabolizing are placed in well identified location and possibly under controlled environment in ad-hoc devices/structures in order to preserve and protect them from decay/alteration and maintain availability,OBI-Branch,PMID: 18550121.Total Prostate Specific Antigen Stability Confirmed After Long-Term Storage of Serum at -80C. J Urol. 2008 Jun 10.,,,,,,,OBI:0302893,,,,,,,,,storage,,
http://purl.obolibrary.org/obo/GECKO_0000121,emotion,,A biological process that results from neurophysiological changes in response to internal and external events.,false,,,http://purl.obolibrary.org/obo/GO_0008150,,,A biological process that results from neurophysiological changes in response to internal and external events.,Wikipedia:Emotion,,,,,,,,GECKO:0000121,,,,,psychological distress and emotions,cognitive and psychological measurements,,,emotion,,
http://purl.obolibrary.org/obo/GECKO_0000093,prescription drug history,,A clinical history that is about the prescription drugs taken by an individual.,false,,,http://purl.obolibrary.org/obo/GECKO_0000115,,,A clinical history that is about the prescription drugs taken by an individual.,,,,,,,,,GECKO:0000093,,,,,medication,questionnaire/survey data,,,prescription drug history,,
http://purl.obolibrary.org/obo/IAO_0000033,directive information entity,,An information content entity whose concretizations indicate to their bearer how to realize them in a process.,false,,,http://purl.obolibrary.org/obo/IAO_0000030,,,An information content entity whose concretizations indicate to their bearer how to realize them in a process.,,,,,,,,,IAO:0000033,,,,,,,,,directive information entity,,
http://purl.obolibrary.org/obo/BFO_0000015,process,,"p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])",false,,,http://www.w3.org/2002/07/owl#Thing,,,"p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])",,"the life of an organism|the course of a disease|the flight of a bird|a process of sleeping|your process of aging.|a process of cell-division, \ a beating of the heart|a process of meiosis",,,,,,,BFO:0000015,,,,,,,,,process,,
http://purl.obolibrary.org/obo/GECKO_0000063,birthplace location,,A geographical location in which an individual was born.,false,,,http://purl.obolibrary.org/obo/BFO_0000029,,,A geographical location in which an individual was born.,,,,,,,,,GECKO:0000063,,,,,birthplace,socio-demographic and economic characteristics,,,birthplace location,,
http://purl.obolibrary.org/obo/GO_0008150,biological_process,single-organism process|single organism process|biological process|physiological process,"A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence.|Note that, in addition to forming the root of the biological process ontology, this term is recommended for use for the annotation of gene products whose biological process is unknown. When this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this.",false,,,http://purl.obolibrary.org/obo/BFO_0000015,,"Note that, in addition to forming the root of the biological process ontology, this term is recommended for use for the annotation of gene products whose biological process is unknown. When this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this.","A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence.",,,GO:0000004|GO:0007582|GO:0044699,,biological process|physiological process,,single-organism process|single organism process,,GO:0008150,,,,,,,,,biological_process,,
http://purl.obolibrary.org/obo/GECKO_0000143,Clinical Dementia Rating Scale score,,A cognitive measurement that is the output (score) from the Clinical Dementia Rating Scale.,false,,,http://purl.obolibrary.org/obo/GECKO_0000119,,,A cognitive measurement that is the output (score) from the Clinical Dementia Rating Scale.,,,,,,,,,GECKO:0000143,,,,,CDR,cognitive functioning,,,Clinical Dementia Rating Scale score,,
http://purl.obolibrary.org/obo/GECKO_0000010,population sex or sexes,,A population quality concerning the sex or sexes of the population.,false,,,http://purl.obolibrary.org/obo/GECKO_0000009,,,A population quality concerning the sex or sexes of the population.,,,,,,,,,GECKO:0000010,,,,,sex(es) studied in cohort,demographic data,,,population sex or sexes,,
http://purl.obolibrary.org/obo/GECKO_0000005,population data item,,A data item that is about a population of organisms.,false,,,http://purl.obolibrary.org/obo/IAO_0000027,,,A data item that is about a population of organisms.,,,,,,,,,GECKO:0000005,,,,,population data,basic cohort attributes,,,population data item,,
http://purl.obolibrary.org/obo/MONDO_0004995,cardiovascular disease,disorder of cardiovascular system|circulatory system disease|disease of cardiovascular system|disease of subdivision of hemolymphoid system|cardiovascular disorder|cardiovascular system disease|cardiovascular disease (CVD)|disorder of cardiovascular system|cardiovascular system disease or disorder|cardiovascular disease|disease or disorder of cardiovascular system,A disease involving the cardiovascular system.,false,,,http://purl.obolibrary.org/obo/MONDO_0000001,,,A disease involving the cardiovascular system.,,,,,disease of cardiovascular system|disease of subdivision of hemolymphoid system|cardiovascular disorder|cardiovascular system disease|cardiovascular disease (CVD)|disorder of cardiovascular system|cardiovascular system disease or disorder|cardiovascular disease|disease or disorder of cardiovascular system,,disorder of cardiovascular system|circulatory system disease,,MONDO:0004995,,,,,cardiovascular diseases,diseases,,,cardiovascular disease,,
http://purl.obolibrary.org/obo/GECKO_0000055,unique identifier,,An identifier that is guaranteed to be unique among all identifiers in a particular domain.,false,,,http://purl.obolibrary.org/obo/IAO_0020000,,,An identifier that is guaranteed to be unique among all identifiers in a particular domain.,Wikipedia:Unique_identifier,,,,,,,,GECKO:0000055,,,,,unique identifiers,survey administration,,,unique identifier,,
http://purl.obolibrary.org/obo/GECKO_0000130,religious affiliation,,"Information about an individual's association with a religion, denomiation, or sub- or non-denominational religious group.",false,,,http://purl.obolibrary.org/obo/IAO_0000030,,,"Information about an individual's association with a religion, denomiation, or sub- or non-denominational religious group.",url:http://archive.stats.govt.nz/methods/classifications-and-standards/classification-related-stats-standards/religious-affiliation/definition.aspx,,,,,,,,GECKO:0000130,,,,,religion,socio-demographic and economic characteristics,,,religious affiliation,,
http://purl.obolibrary.org/obo/GECKO_0000103,recreational drug history,,A lifestyle history that is about the use of unprescribed and/or non-prescription drugs.,false,,,http://purl.obolibrary.org/obo/GECKO_0000067,,,A lifestyle history that is about the use of unprescribed and/or non-prescription drugs.,,,,,,,,,GECKO:0000103,,,,,recreational drug history,lifestyle and behaviours,,,recreational drug history,,
http://purl.obolibrary.org/obo/PATO_0000011,age,,A time quality inhering in a bearer by virtue of how long the bearer has existed.,false,,,http://purl.obolibrary.org/obo/BFO_0000019,,,A time quality inhering in a bearer by virtue of how long the bearer has existed.,,,,,,,,,PATO:0000011,,,,,age/birthdate,socio-demographic and economic characteristics,,,age,,
http://purl.obolibrary.org/obo/STATO_0000093,date,,"Information about a calendar date or timestamp indicating day, month, year and time of an event.",false,,,http://purl.obolibrary.org/obo/IAO_0000109,,,"Information about a calendar date or timestamp indicating day, month, year and time of an event.",STATO,,,,,,,,STATO:0000093,,,,,date and time-related information,survey administration,,,date,,
http://purl.obolibrary.org/obo/GECKO_0000135,Mini-Mental State Exam score,,A cognitive measurement that is an output (score) from the Mini-Mental State Exam.,false,,,http://purl.obolibrary.org/obo/GECKO_0000119,,,A cognitive measurement that is an output (score) from the Mini-Mental State Exam.,,,,,,,,,GECKO:0000135,,,,,MMSE,cognitive functioning,,,Mini-Mental State Exam score,,
http://purl.obolibrary.org/obo/GECKO_0000115,treatment history,,"A clinical history that is about any treatment (surgical, prescription, etc.) for disease, disorder, or symptom.",false,,,http://purl.obolibrary.org/obo/OGMS_0000015,,,"A clinical history that is about any treatment (surgical, prescription, etc.) for disease, disorder, or symptom.",,,,,,,,,GECKO:0000115,,,,,,,,,treatment history,,
http://purl.obolibrary.org/obo/GECKO_0000113,biosample availability textual entity,,An availability textual entity that is about a substance from an organism (a biosample).,false,,,http://purl.obolibrary.org/obo/IAO_0000612,,,An availability textual entity that is about a substance from an organism (a biosample).,,,,,,,,,GECKO:0000113,,,,,availability,biosample,,http://purl.obolibrary.org/obo/UBERON_0000463,biosample availability textual entity,,
http://purl.obolibrary.org/obo/OGMS_0000020,symptom,,"A process experienced by the patient, which can only be experienced by the patient, that is hypothesized to be clinically relevant.",false,,,http://purl.obolibrary.org/obo/BFO_0000019,,,"A process experienced by the patient, which can only be experienced by the patient, that is hypothesized to be clinically relevant.",http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf,,,,,,,,OGMS:0000020,,,,,signs and symptoms,other questionnaire/survey data,,,symptom,,
http://purl.obolibrary.org/obo/OBI_0002415,exposure to environmental and workplace carcinogens history,,A information content entity that indicates the exposure of an individual to carcinogens in the workplace or environment.,false,,,http://purl.obolibrary.org/obo/IAO_0000030,,,A information content entity that indicates the exposure of an individual to carcinogens in the workplace or environment.,OBIB,,,,,,,,OBI:0002415,,,,,exposure to carcinogens,physical environment,,,exposure to environmental and workplace carcinogens history,,
http://purl.obolibrary.org/obo/GECKO_0000040,microbiome sequencing assay,,A genomic assay that profiles the microorganisms present in a sample.|Potential new OBI request,false,,,http://purl.obolibrary.org/obo/GECKO_0000032,,Potential new OBI request,A genomic assay that profiles the microorganisms present in a sample.,,,,,,,,,GECKO:0000040,,,,,"Microbiome markers (rRNA, etc)",genomics,,,microbiome sequencing assay,,
http://purl.obolibrary.org/obo/GECKO_0000042,eQTL analysis,,A genomic assay that identifies genetic loci and candidate genes correlated with phenotypes.|Potential new OBI request,false,,,http://purl.obolibrary.org/obo/GECKO_0000032,,Potential new OBI request,A genomic assay that identifies genetic loci and candidate genes correlated with phenotypes.,PMID:27964730,,,,,,,,GECKO:0000042,,,,,eQTL (Cis eQTLs and/or Trans eQTLs),genomics,,,eQTL analysis,,
http://purl.obolibrary.org/obo/GECKO_0000123,psychological treatment history,,A non-pharmacological treatment history that is about psychological treatments such as counselling.,false,,,http://purl.obolibrary.org/obo/GECKO_0000091,,,A non-pharmacological treatment history that is about psychological treatments such as counselling.,,,,,,,,,GECKO:0000123,,,,,psychological interventions,non-pharmacological interventions,,,psychological treatment history,,
http://purl.obolibrary.org/obo/CMO_0000021,body morphological measurement data item,,,false,,,http://purl.obolibrary.org/obo/CMO_0000000,,,,,,,,,,,,CMO:0000021,,,,,anthropometry,physiological measurements,,,body morphological measurement data item,,
http://purl.obolibrary.org/obo/GECKO_0000096,response to medication,,A biological process that results from a drug stimulus.,false,,,http://purl.obolibrary.org/obo/GO_0008150,,,A biological process that results from a drug stimulus.,,,,,,,,,GECKO:0000096,,,,,drug response(s),medication,,,response to medication,,
http://purl.obolibrary.org/obo/GECKO_0000132,family history of disease,,A clinical history that is about any family history of disease.,false,,,http://purl.obolibrary.org/obo/OGMS_0000015,,,A clinical history that is about any family history of disease.,,,,,,,,,GECKO:0000132,,,,,family history of disease,other questionnaire/survey data,,,family history of disease,,
http://purl.obolibrary.org/obo/EUPATH_0000147,cause of participant death,,An information content entity indicating the cause of death for a participant in the study.,false,,,http://purl.obolibrary.org/obo/IAO_0000030,,,An information content entity indicating the cause of death for a participant in the study.,Penn Group,,,,,,,,EUPATH:0000147,,,,,cause of death,other questionnaire/survey data,,,cause of participant death,,
http://purl.obolibrary.org/obo/GECKO_0000009,population quality,,A quality which inheres in a population of organisms.,false,,,http://purl.obolibrary.org/obo/BFO_0000019,,,A quality which inheres in a population of organisms.,,,,,,,,,GECKO:0000009,,,,,demographic data,basic cohort attributes,,,population quality,,
http://purl.obolibrary.org/obo/UBERON_0001988,feces,portion of guano|portion of scat|portion of dung|cow dung|cow pat|dung|fewmet|frass|guano|scat|spraint|droppings|excrement|ordure|spoor|excreta|porción de mierda@es|portion of fecal matter|portion of fecal material|teil der fäkalien@de|fecal matter|piece of shit|portion of excrement|portion of feces|matières fécales@fr|fecal material|partie de la merde@fr|portion of faeces|portionem cacas|faeces|merde@fr|stool,"Portion of semisolid bodily waste discharged through the anus[MW,modified]",false,,,http://purl.obolibrary.org/obo/UBERON_0000463,,,"Portion of semisolid bodily waste discharged through the anus[MW,modified]",,,,excreta,porción de mierda@es|portion of fecal matter|portion of fecal material|teil der fäkalien@de|fecal matter|piece of shit|portion of excrement|portion of feces|matières fécales@fr|fecal material|partie de la merde@fr|portion of faeces|portionem cacas|faeces|merde@fr|stool,portion of guano|portion of scat|portion of dung|cow dung|cow pat|dung|fewmet|frass|guano|scat|spraint,droppings|excrement|ordure|spoor,,UBERON:0001988,,,,,stool,sample type,,,feces,,
http://purl.obolibrary.org/obo/STATO_0000047,count,,a count is a data item denoted by an integer and represented the number of instances or occurences of an entity,false,,,http://purl.obolibrary.org/obo/IAO_0000109,,,a count is a data item denoted by an integer and represented the number of instances or occurences of an entity,STATO,a count of 4 resulting from counting limbs in humans,,,,,,,STATO:0000047,,,,,,,,,count,,
http://purl.obolibrary.org/obo/GECKO_0000008,population size,,A sample size that is about the count of individual organisms in a population.,false,,,http://purl.obolibrary.org/obo/GECKO_0000106,,,A sample size that is about the count of individual organisms in a population.,,,,,,,,,GECKO:0000008,,,,,num. participants,population data,,http://purl.obolibrary.org/obo/PCO_0000000,population size,,
http://purl.obolibrary.org/obo/IAO_0000027,data item,,"An information content entity that is intended to be a truthful statement about something (modulo, e.g., measurement precision or other systematic errors) and is constructed/acquired by a method which reliably tends to produce (approximately) truthful statements.",false,,,http://purl.obolibrary.org/obo/IAO_0000030,data,,"An information content entity that is intended to be a truthful statement about something (modulo, e.g., measurement precision or other systematic errors) and is constructed/acquired by a method which reliably tends to produce (approximately) truthful statements.",,"Data items include counts of things, analyte concentrations, and statistical summaries.",,,,,,,IAO:0000027,,,,,,,,,data item,,
http://purl.obolibrary.org/obo/GECKO_0000142,Neuropsychiatric Inventory score,,A cognitive measurement that is the output (score) from the Neuropsychiatric Inventory.,false,,,http://purl.obolibrary.org/obo/GECKO_0000119,,,A cognitive measurement that is the output (score) from the Neuropsychiatric Inventory.,,,,,,,,,GECKO:0000142,,,,,NPI,cognitive functioning,,,Neuropsychiatric Inventory score,,
http://purl.obolibrary.org/obo/EUPATH_0000451,healthcare information,,An information content entity about healthcare that is private or public.,false,,,http://purl.obolibrary.org/obo/IAO_0000030,,,An information content entity about healthcare that is private or public.,,,,,,,,,EUPATH:0000451,,,,,healthcare information,questionnaire/survey data,,,healthcare information,,
http://purl.obolibrary.org/obo/GECKO_0000141,Severe Impairment Battery score,,A cognitive measurement that is the output (score) from the Severe Impairment Battery.,false,,,http://purl.obolibrary.org/obo/GECKO_0000119,,,A cognitive measurement that is the output (score) from the Severe Impairment Battery.,,,,,,,,,GECKO:0000141,,,,,SIB,cognitive functioning,,,Severe Impairment Battery score,,
http://purl.obolibrary.org/obo/OBI_0002117,whole genome sequencing assay,,A DNA sequencing assay that intends to provide information about the sequence of an entire genome of an organism.,false,,,http://purl.obolibrary.org/obo/GECKO_0000032,WGS,,A DNA sequencing assay that intends to provide information about the sequence of an entire genome of an organism.,PMID:25827230|PMID:23095910,"WGS permits comprehensive sequencing of introns and exons, whereas whole exome sequencing (WES) allows deeper sequencing of exonic regions at a lower cost. Due to the large number of genetic variants found in each genome, it is necessary to use filtering approaches to distinguish deleterious from benign variants. WES has been used successfully to identify novel genetic causes of primary immunodeficiency. Complex structural variations and non-Mendelian disorders remain challenges for WGS.",,,,,,,OBI:0002117,,,,,WGS,genomics,,,whole genome sequencing assay,,
http://purl.obolibrary.org/obo/IAO_0000619,consent textual entity,,A textual entity that documents the consenting process used to enroll patients in a study.,false,,,http://purl.obolibrary.org/obo/IAO_0000300,,,A textual entity that documents the consenting process used to enroll patients in a study.,,"From Shiba et al. Acta Neuropathol Commun. 2013; 1: 45. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3893467/):

Written informed consent was obtained from the patient’s parents for publication of this Case report and any accompanying images. A copy of the written consent is available for review by the Editor-in chief of this journal.",,,,,,,IAO:0000619,,,,,consent/accessibility,survey administration,,,consent textual entity,,
http://purl.obolibrary.org/obo/GECKO_0000068,tobacco use history,,A lifestyle history that is about the tobacco use or exposure of an individual.,false,,,http://purl.obolibrary.org/obo/GECKO_0000067,,,A lifestyle history that is about the tobacco use or exposure of an individual.,,,,,,,,,GECKO:0000068,,,,,tobacco use history,lifestyle and behaviours,,,tobacco use history,,
http://purl.obolibrary.org/obo/EUPATH_0000308,hospitalization information,,an information content entity that is about a part of a health care encounter that occurs in a hospital facility,false,,,http://purl.obolibrary.org/obo/IAO_0000030,,,an information content entity that is about a part of a health care encounter that occurs in a hospital facility,EuPathDB,,,,,,,,EUPATH:0000308,,,,,hospitalizations,healthcare information,,,hospitalization information,,
http://purl.obolibrary.org/obo/EUPATH_0000305,aggregated clinical visit information,,a data item that is about an investigation and is the specified output of a data transformation that has only clinical visit data as input,false,,,http://purl.obolibrary.org/obo/IAO_0000030,,,a data item that is about an investigation and is the specified output of a data transformation that has only clinical visit data as input,EuPathDB,,,,,,,,EUPATH:0000305,,,,,routine clincial visits,healthcare information,,,aggregated clinical visit information,,
http://purl.obolibrary.org/obo/MONDO_0000001,disease or disorder,"diseases and disorders|medical condition|disease or disorder, non-neoplastic|disease or disorder|other disease|condition|disease|disorder|disorders|diseases",A disease is a disposition to undergo pathological processes that exists in an organism because of one or more disorders in that organism.,false,,,http://purl.obolibrary.org/obo/BFO_0000016,,,A disease is a disposition to undergo pathological processes that exists in an organism because of one or more disorders in that organism.,,,,,"diseases and disorders|medical condition|disease or disorder, non-neoplastic|disease or disorder|other disease|condition|disease|disorder|disorders|diseases",,,,MONDO:0000001,,,,,diseases,questionnaire/survey data,,,disease or disorder,,
http://purl.obolibrary.org/obo/GECKO_0000026,biosample storage,,A storage process for a biosample collected from an organism.,false,,,http://purl.obolibrary.org/obo/OBI_0302893,,,A storage process for a biosample collected from an organism.,,,,,,,,,GECKO:0000026,,,,,storage method,biosample,,,biosample storage,,
http://purl.obolibrary.org/obo/GECKO_0000071,sleep history,,A lifestyle history that is about the sleep quality and duration of an individual.,false,,,http://purl.obolibrary.org/obo/GECKO_0000067,,,A lifestyle history that is about the sleep quality and duration of an individual.,,,,,,,,,GECKO:0000071,,,,,sleep history,lifestyle and behaviours,,,sleep history,,
http://purl.obolibrary.org/obo/MONDO_0002081,musculoskeletal system disease,musculoskeletal disorder|disorder of musculoskeletal system|musculoskeletal system disease|musculoskeletal system disease or disorder|disease of musculoskeletal system|musculoskeletal disease|disorder of musculoskeletal system|musculoskeletal system disorder|disease or disorder of musculoskeletal system,A disease involving the musculoskeletal system.,false,,,http://purl.obolibrary.org/obo/MONDO_0000001,,,A disease involving the musculoskeletal system.,,,,,musculoskeletal system disease|musculoskeletal system disease or disorder|disease of musculoskeletal system|musculoskeletal disease|disorder of musculoskeletal system|musculoskeletal system disorder|disease or disorder of musculoskeletal system,,musculoskeletal disorder|disorder of musculoskeletal system,,MONDO:0002081,,,,,musculoskeletal system diseases,diseases,,,musculoskeletal system disease,,
http://purl.obolibrary.org/obo/GECKO_0000060,gender,,"An organismal quality inhering in a bearer by virtue of the bearer's preference towards a range of characteristics pertaining to, and differentiating between, masculinity and femininity.",false,,,http://purl.obolibrary.org/obo/PATO_0001995,,,"An organismal quality inhering in a bearer by virtue of the bearer's preference towards a range of characteristics pertaining to, and differentiating between, masculinity and femininity.",Wikipedia:Gender|PATO:0000047,,,,,,,,GECKO:0000060,,,,,gender,socio-demographic and economic characteristics,,,gender,,
http://purl.obolibrary.org/obo/OBI_0000435,genotyping assay,,An assay which generates data about a genotype from a specimen of genomic DNA. A variety of techniques and instruments can be used to produce information about sequence variation at particular genomic positions.,false,,,http://purl.obolibrary.org/obo/GECKO_0000032,genotype profiling|SNP analysis,,An assay which generates data about a genotype from a specimen of genomic DNA. A variety of techniques and instruments can be used to produce information about sequence variation at particular genomic positions.,OBI Biomaterial,High-throughput genotyping of oncogenic human papilloma viruses with MALDI-TOF mass spectrometry. Clin Chem. 2008 Jan;54(1):86-92. Epub 2007 Nov 2.PMID: 17981923,,,,,,,OBI:0000435,,,,,DNA/Genotyping,genomics,,,genotyping assay,,
http://purl.obolibrary.org/obo/GECKO_0000065,education level,,An organismal quality inhering in a bearer by virute of the bearer's highest level of formal education completed.,false,,,http://purl.obolibrary.org/obo/PATO_0001995,,,An organismal quality inhering in a bearer by virute of the bearer's highest level of formal education completed.,,,,,,,,,GECKO:0000065,,,,,education,socio-demographic and economic characteristics,,,education level,,
http://purl.obolibrary.org/obo/MONDO_0021178,injury,traumatic injury|injury|trauma|wound,"Damage inflicted on the body as the direct or indirect result of an external force, with or without disruption of structural continuity.",false,,,http://purl.obolibrary.org/obo/MONDO_0000001,,,"Damage inflicted on the body as the direct or indirect result of an external force, with or without disruption of structural continuity.",,,,,traumatic injury|injury|trauma|wound,,,,MONDO:0021178,,,,,injuries,diseases,,,injury,,
http://purl.obolibrary.org/obo/CMO_0000294,pulse data item,,,false,,,http://purl.obolibrary.org/obo/CMO_0000001,,,,,,,,,,,,CMO:0000294,,,,,heart rate (HR),circulation and respiration,,,pulse data item,,
http://purl.obolibrary.org/obo/GECKO_0000073,physician contact textual entity,,"A textual entity that contains contact details for an individual's physician, which may include: name, phone number, address, etc.",false,,,http://purl.obolibrary.org/obo/IAO_0000300,,,"A textual entity that contains contact details for an individual's physician, which may include: name, phone number, address, etc.",,,,,,,,,GECKO:0000073,,,,,physician/practitioner info,healthcare information,,,physician contact textual entity,,
http://purl.obolibrary.org/obo/BFO_0000016,disposition,,,false,,,http://purl.obolibrary.org/obo/BFO_0000017,,,,,an atom of element X has the disposition to decay to an atom of element Y|children are innately disposed to categorize objects in certain ways.|certain people have a predisposition to colon cancer|the cell wall is disposed to filter chemicals in endocytosis and exocytosis,,,,,,,BFO:0000016,,,,,,,,,disposition,,
http://purl.obolibrary.org/obo/MONDO_0005039,reproductive system disease,disorder of reproductive system|reproductive system disease or disorder|reproductive disease|genital system disease|reproductive system disease|disease of reproductive system|reproductive system disorder|disease or disorder of reproductive system|disorder of reproductive system|genital disorders,A disease involving the reproductive system.,false,,,http://purl.obolibrary.org/obo/MONDO_0000001,,,A disease involving the reproductive system.,,,,,reproductive system disease or disorder|reproductive disease|genital system disease|reproductive system disease|disease of reproductive system|reproductive system disorder|disease or disorder of reproductive system|disorder of reproductive system|genital disorders,,disorder of reproductive system,,MONDO:0005039,,,,,reproductive system diseases,diseases,,,reproductive system disease,,
http://purl.obolibrary.org/obo/GECKO_0000131,human social environment,,"An immaterial entity that encompasses the domain made up of interactions between the individual's physical environment, social processes, and relationships with other individuals and groups.",false,,,http://purl.obolibrary.org/obo/BFO_0000141,,,"An immaterial entity that encompasses the domain made up of interactions between the individual's physical environment, social processes, and relationships with other individuals and groups.",PMID:10352860,,,,,,,,GECKO:0000131,,,,,social environment,other questionnaire/survey data,,,human social environment,,
http://purl.obolibrary.org/obo/OBI_0500027,inclusion criterion,,"an inclusion criterion (rule) is_a *eligibility criterion*  which defines and states a condition which, if met, makes an entity suitable for a given task or participation in a given process. For instance, in a study protocol, inclusion criteria indicate the conditions that prospective subjects MUST meet to be eligible for participation in a study.",false,,,http://purl.obolibrary.org/obo/IAO_0000033,inclusion rule|inclusion condition,,"an inclusion criterion (rule) is_a *eligibility criterion*  which defines and states a condition which, if met, makes an entity suitable for a given task or participation in a given process. For instance, in a study protocol, inclusion criteria indicate the conditions that prospective subjects MUST meet to be eligible for participation in a study.",Adapted from Clinical Research Glossary Version 4.0 CDICS glossary group,PMID: 23979341-The major inclusion criterion was patients in whom severe cerebral embolism was diagnosed at age 75 or younger (more than 9 in the NIHSS score on day 7 after the onset of stroke) .,,,,,,,OBI:0500027,,,,,criteria for enrollment and recruitment procedures,population data,,,inclusion criterion,,
http://purl.obolibrary.org/obo/BFO_0000017,realizable entity,,,false,,,http://www.w3.org/2002/07/owl#Thing,,,,,the disposition of your blood to coagulate|the role of being a doctor|the role of this boundary to delineate where Utah and Colorado meet|the disposition of this piece of metal to conduct electricity.|the function of your reproductive organs,,,,,,,BFO:0000017,,,,,,,,,realizable entity,,
http://purl.obolibrary.org/obo/GECKO_0000003,timeline,,A directive information entity that specifies the sequence in which a series of events occurred or will occur.,false,,,http://purl.obolibrary.org/obo/IAO_0000033,,,A directive information entity that specifies the sequence in which a series of events occurred or will occur.,,,,,,,,,GECKO:0000003,,,,,timeline,basic cohort attributes,,,timeline,,
http://purl.obolibrary.org/obo/GECKO_0000011,population gender or genders,,A population quality concerning the gender or genders of the population.,false,,,http://purl.obolibrary.org/obo/GECKO_0000009,,,A population quality concerning the gender or genders of the population.,,,,,,,,,GECKO:0000011,,,,,gender(s) studied in cohort,demographic data,,,population gender or genders,,
http://purl.obolibrary.org/obo/GECKO_0000126,perception of health measurement,,A psychological measurement of an individual's subjective perception of health.,false,,,http://purl.obolibrary.org/obo/GECKO_0000118,,,A psychological measurement of an individual's subjective perception of health.,,,,,,,,,GECKO:0000126,,,,,perception of health,perception of health and quality of life,,,perception of health measurement,,
http://purl.obolibrary.org/obo/MONDO_0004992,cancer,"MT|malignant neoplasm (disease)|malignant Growth|neoplasm, malignant|organ system cancer|primary cancer|malignant tumor|malignant neoplasm|malignant neoplastic disease|neoplasm (disease), malignant|cell type cancer|CA|malignancy|cancer","A tumor composed of atypical neoplastic, often pleomorphic cells that invade other tissues. Malignant neoplasms often metastasize to distant anatomic sites and may recur after excision. The most common malignant neoplasms are carcinomas (adenocarcinomas or squamous cell carcinomas), Hodgkin and non-Hodgkin lymphomas, leukemias, melanomas, and sarcomas.",false,,,http://purl.obolibrary.org/obo/MONDO_0000001,,,"A tumor composed of atypical neoplastic, often pleomorphic cells that invade other tissues. Malignant neoplasms often metastasize to distant anatomic sites and may recur after excision. The most common malignant neoplasms are carcinomas (adenocarcinomas or squamous cell carcinomas), Hodgkin and non-Hodgkin lymphomas, leukemias, melanomas, and sarcomas.",,,,,"malignant neoplasm (disease)|malignant Growth|neoplasm, malignant|organ system cancer|primary cancer|malignant tumor|malignant neoplasm|malignant neoplastic disease|neoplasm (disease), malignant|cell type cancer|CA|malignancy|cancer",,MT,,MONDO:0004992,,,,,cancer,diseases,,,cancer,,
http://purl.obolibrary.org/obo/GECKO_0000114,reproductive history,,"A clinical history that is about pregnancy, maternity, fertility, menses, and any other reproductive aspect.",false,,,http://purl.obolibrary.org/obo/OGMS_0000015,,,"A clinical history that is about pregnancy, maternity, fertility, menses, and any other reproductive aspect.",,,,,,,,,GECKO:0000114,,,,,reproduction,other questionnaire/survey data,,,reproductive history,,
http://purl.obolibrary.org/obo/IAO_0000109,measurement datum,,A measurement datum is an information content entity that is a recording of the output of a measurement such as produced by a device.,false,,,http://purl.obolibrary.org/obo/IAO_0000027,,,A measurement datum is an information content entity that is a recording of the output of a measurement such as produced by a device.,group:OBI|OBI_0000305,"Examples of measurement data are the recoding of the weight of a mouse as {40,mass,""grams""}, the recording of an observation of the behavior of the mouse {,process,""agitated""}, the recording of the expression level of a gene as measured through the process of microarray experiment {3.4,luminosity,}.",,,,,,,IAO:0000109,,,,,,,,,measurement datum,,
http://purl.obolibrary.org/obo/GECKO_0000129,information on use of assistive devices,,Information about an individual's use of assistive devices in performing daily activities.,false,,,http://purl.obolibrary.org/obo/IAO_0000030,,,Information about an individual's use of assistive devices in performing daily activities.,Maelstrom:Use_devices,,,,,,,,GECKO:0000129,,,,,use of assistive devices,perception of health and quality of life,,,information on use of assistive devices,,
http://purl.obolibrary.org/obo/OBI_0001624,organism identification assay,,An assay that identifies the organism species in a specimen.,false,,,http://purl.obolibrary.org/obo/OBI_0000070,,,An assay that identifies the organism species in a specimen.,NIAID GSCID-BRC metadata working group,,,,,,,,OBI:0001624,,,,,microbiology,laboratory measures,,,organism identification assay,,
http://purl.obolibrary.org/obo/MONDO_0024623,otorhinolaryngologic disease,"ENT diseases|disease, otolaryngological|disease, otorhinolaryngological|ENT disease|disease, otolaryngologic|disease, otorhinolaryngologic|diseases, otorhinolaryngological|otolaryngological diseases|diseases, otolaryngological|otolaryngological disease|diseases, otolaryngologic|diseases, otorhinolaryngologic|disease, ENT|otolaryngologic disease|otolaryngologic diseases|otorhinolaryngological disease|otorhinolaryngological diseases|diseases, ENT|otolaryngologic disorder|otorhinolaryngologic disease|ear/nose/throat disease|ear, nose or throat disorder|ear, nose and throat disorder","Pathological processes of the ear, the nose, and the throat, also known as the ENT diseases.|Editor note: consider uberon class",false,,,http://purl.obolibrary.org/obo/MONDO_0000001,,Editor note: consider uberon class,"Pathological processes of the ear, the nose, and the throat, also known as the ENT diseases.",,,,,"otolaryngologic disorder|otorhinolaryngologic disease|ear/nose/throat disease|ear, nose or throat disorder|ear, nose and throat disorder",,"ENT diseases|disease, otolaryngological|disease, otorhinolaryngological|ENT disease|disease, otolaryngologic|disease, otorhinolaryngologic|diseases, otorhinolaryngological|otolaryngological diseases|diseases, otolaryngological|otolaryngological disease|diseases, otolaryngologic|diseases, otorhinolaryngologic|disease, ENT|otolaryngologic disease|otolaryngologic diseases|otorhinolaryngological disease|otorhinolaryngological diseases|diseases, ENT",,MONDO:0024623,,,,,"diseases of the ear, nose, and/or throat",diseases,,,otorhinolaryngologic disease,,
http://purl.obolibrary.org/obo/GECKO_0000013,data collection,,A planned process that is a part of an investigation in which raw data is collected.,false,,,http://purl.obolibrary.org/obo/OBI_0000011,,,A planned process that is a part of an investigation in which raw data is collected.,,,,,,,,,GECKO:0000013,,,,,data collection events,basic cohort attributes,,,data collection,,
http://purl.obolibrary.org/obo/MONDO_0029000,poisoning,intoxication|poisoning syndrome|Poisonings,"A condition or physical state produced by the ingestion, injection, inhalation of or exposure to a deleterious agent.",false,,,http://purl.obolibrary.org/obo/MONDO_0000001,,,"A condition or physical state produced by the ingestion, injection, inhalation of or exposure to a deleterious agent.",,,,,,,intoxication|poisoning syndrome|Poisonings,,MONDO:0029000,,,,,poisoning,diseases,,,poisoning,,
http://purl.obolibrary.org/obo/BFO_0000029,site,,,false,,,http://purl.obolibrary.org/obo/BFO_0000141,,,,,the interior of your refrigerator|the hold of a ship|a rabbit hole|your left nostril (a fiat part – the opening – of your left nasal cavity)|the interior of your office|the Piazza San Marco|the interior of the trunk of your car|the Grand Canyon|a hole in the interior of a portion of cheese|an air traffic control region defined in the airspace above an airport|Manhattan Canyon)|the interior of your bedroom|the lumen of your gut|the interior of a kangaroo pouch|the cockpit of an aircraft,,,,,,,BFO:0000029,,,,,,,,,site,,
http://purl.obolibrary.org/obo/GECKO_0000102,summary statistic for federated data,,A statistic that summarizes a set of federated data.,false,,,http://purl.obolibrary.org/obo/STATO_0000039,,,A statistic that summarizes a set of federated data.,,,,,,,,,GECKO:0000102,,,,,summary statistics for additional data from federated sources,statistics,,,summary statistic for federated data,,
http://purl.obolibrary.org/obo/GECKO_0000091,non-pharmacological treatment history,,A treatment history that is about any non-pharamacological treatments such as surgery or physical therapy.,false,,,http://purl.obolibrary.org/obo/GECKO_0000115,,,A treatment history that is about any non-pharamacological treatments such as surgery or physical therapy.,,,,,,,,,GECKO:0000091,,,,,non-pharmacological interventions,questionnaire/survey data,,,non-pharmacological treatment history,,
http://purl.obolibrary.org/obo/GECKO_0000069,alcohol use history,,A lifestyle history that is about the alcohol consumption of an individual.,false,,,http://purl.obolibrary.org/obo/GECKO_0000067,,,A lifestyle history that is about the alcohol consumption of an individual.,,,,,,,,,GECKO:0000069,,,,,alcohol use history,lifestyle and behaviours,,,alcohol use history,,
http://purl.obolibrary.org/obo/GECKO_0000133,diagnostic procedure history,,"A non-pharmacological treatment history that is about diagnostic procedures to determine a condition or disease.|Includes procedures such as colonoscopies, ultrasounds, etc., but excludes laboratory tests.",false,,,http://purl.obolibrary.org/obo/GECKO_0000091,,"Includes procedures such as colonoscopies, ultrasounds, etc., but excludes laboratory tests.",A non-pharmacological treatment history that is about diagnostic procedures to determine a condition or disease.,,,,,,,,,GECKO:0000133,,,,,diagnostic interventions,non-pharmacological interventions,,,diagnostic procedure history,,
http://purl.obolibrary.org/obo/IAO_0000300,textual entity,,"A textual entity is a part of a manifestation (FRBR sense), a generically dependent continuant whose concretizations are patterns of glyphs intended to be interpreted as words, formulas, etc.",false,,,http://purl.obolibrary.org/obo/IAO_0000030,text,,"A textual entity is a part of a manifestation (FRBR sense), a generically dependent continuant whose concretizations are patterns of glyphs intended to be interpreted as words, formulas, etc.",,"Words, sentences, paragraphs, and the written (non-figure) parts of publications are all textual entities",,,,,,,IAO:0000300,,,,,,,,,textual entity,,
http://purl.obolibrary.org/obo/OBI_0000070,assay,,"A planned process with the objective to produce information about the material entity that is the evaluant, by physically examining it or its proxies.",false,,,http://purl.obolibrary.org/obo/OBI_0000011,measuring|scientific observation,,"A planned process with the objective to produce information about the material entity that is the evaluant, by physically examining it or its proxies.",OBI branch derived,Assay the wavelength of light emitted by excited Neon atoms. Count of geese flying over a house.,,,,,,,OBI:0000070,,,,,,,,,assay,,
http://purl.obolibrary.org/obo/OBI_0002118,exome sequencing assay,,A DNA sequencing assay that intends to provide information about the sequence of the protein coding components of a genome (exons).,false,,,http://purl.obolibrary.org/obo/GECKO_0000032,WES,,A DNA sequencing assay that intends to provide information about the sequence of the protein coding components of a genome (exons).,PMID:25827230,"DNA was extracted from the Ficoll pellet of blood taken from congenital asplenia patients. Unamplified, high-molecular weight, RNase-treated genomic DNA (4_6 _g) was used for whole exome sequencing (WES) with the use of Agilent 71 Mb (V4 + UTR) singlesample capture and an Illumina HiSeq 2000. Sequencing was carried out so as to obtain 30_ coverage from 2 _ 100-bp paired-end reads. We used the Annovar tool (25) to annotate the resulting highquality (HQ) variants. In the regions targeted by WES capture (81.5% of the consensus coding genome), the mean numbers of single-nucleotide variants (SNVs) and small insertions/deletions (indels) detected per sample were 84,192 and13,325, respectively. After filtering, a mean of 74,398 (95.3%) high-quality (HQ) SNVs and 9,033 (70.6%) HQ indels were called. A mean of 105 coding HQ SNVs and 32 indels was identified.",,,,,,,OBI:0002118,,,,,WES,genomics,,,exome sequencing assay,,
http://purl.obolibrary.org/obo/MONDO_0024458,disease of visual system,disorder of visual system|visual system disease or disorder|disorder of visual system|disease or disorder of visual system|disease of visual system|visual system disease|visual system disorder,A disease that involves the visual system.,false,,,http://purl.obolibrary.org/obo/MONDO_0000001,,,A disease that involves the visual system.,,,,,visual system disease or disorder|disorder of visual system|disease or disorder of visual system|disease of visual system|visual system disease|visual system disorder,,disorder of visual system,,MONDO:0024458,,,,,visual system diseases,diseases,,,disease of visual system,,
http://purl.obolibrary.org/obo/MONDO_0004335,digestive system disease,disorder of digestive system|disease or disorder of digestive system|gastroenterological system disease|disorder of digestive system|gastroenterological system disorder|stomach or intestinal disorder|gastroenteropathy|alimentary system disease|disease of digestive system|gastrointestinal disorder|digestive disease|gastrointestinal system disease|git disease|digestive system disease or disorder|digestive system disease|digestive system disorder|gastrointestinal system disorder|gastrointestinal disease,A disease or disorder that involves the digestive system.,false,,,http://purl.obolibrary.org/obo/MONDO_0000001,,,A disease or disorder that involves the digestive system.,,,,,disease or disorder of digestive system|gastroenterological system disease|disorder of digestive system|gastroenterological system disorder|stomach or intestinal disorder|gastroenteropathy|alimentary system disease|disease of digestive system|gastrointestinal disorder|digestive disease|gastrointestinal system disease|git disease|digestive system disease or disorder|digestive system disease|digestive system disorder|gastrointestinal system disorder|gastrointestinal disease,,disorder of digestive system,,MONDO:0004335,,,,,digestive system diseases,diseases,,,digestive system disease,,
http://purl.obolibrary.org/obo/GECKO_0000047,biosample processing,,A material processing which prepares a biosample for investigation.,false,,,http://purl.obolibrary.org/obo/OBI_0000094,,,A material processing which prepares a biosample for investigation.,,,,,,,,,GECKO:0000047,,,,,processing method,biosample,,,biosample processing,,
http://purl.obolibrary.org/obo/PATO_0001995,organismal quality,,A quality that inheres in an entire organism or part of an organism.,false,,,http://purl.obolibrary.org/obo/BFO_0000019,,,A quality that inheres in an entire organism or part of an organism.,,,,,,,,,PATO:0001995,,,,,socio-demographic and economic characteristics,questionnaire/survey data,,,organismal quality,,
http://purl.obolibrary.org/obo/CMO_0000001,cardiovascular measurement data item,,,false,,,http://purl.obolibrary.org/obo/CMO_0000000,,,,,,,,,,,,CMO:0000001,,,,,circulation and respiration,physiological measurements,,,cardiovascular measurement data item,,
http://purl.obolibrary.org/obo/OBI_0500000,study design,,A plan specification comprised of protocols (which may specify how and what kinds of data will be gathered) that are executed as part of an investigation and is realized during a study design execution.,false,,,http://purl.obolibrary.org/obo/IAO_0000104,experimental design,,A plan specification comprised of protocols (which may specify how and what kinds of data will be gathered) that are executed as part of an investigation and is realized during a study design execution.,,"a matched pairs study design describes criteria by which subjects are identified as pairs which then undergo the same protocols, and the data generated is analyzed by comparing the differences between the paired subjects, which constitute the results of the executed study design.",,,,,,,OBI:0500000,,,,,study design,basic cohort attributes,,,study design,,
http://purl.obolibrary.org/obo/IAO_0000005,objective specification,,A directive information entity that describes an intended process endpoint. When part of a plan specification the concretization is realized in a planned process in which the bearer tries to effect the world so that the process endpoint is achieved.,false,,,http://purl.obolibrary.org/obo/IAO_0000033,goal specification,,A directive information entity that describes an intended process endpoint. When part of a plan specification the concretization is realized in a planned process in which the bearer tries to effect the world so that the process endpoint is achieved.,OBI_0000217|OBI Plan and Planned Process/Roles Branch,In the protocol of a ChIP assay the objective specification says to identify protein and DNA interaction.,,,,,,,IAO:0000005,,,,,aims and objectives,basic cohort attributes,,,objective specification,,
http://purl.obolibrary.org/obo/EUPATH_0000359,occupation,,An information content entity that is about an activity that realizes a social role and is often performed for payment.,false,,,http://purl.obolibrary.org/obo/IAO_0000030,,,An information content entity that is about an activity that realizes a social role and is often performed for payment.,,,,,,,,,EUPATH:0000359,,,,,occupation,socio-demographic and economic characteristics,,,occupation,,
http://purl.obolibrary.org/obo/OBI_0000185,imaging assay,,An assay that produces a picture of an entity.,false,,,http://purl.obolibrary.org/obo/OBI_0000070,,,An assay that produces a picture of an entity.,OBI branch derived,,,,,,,,OBI:0000185,,,,,imaging,laboratory measures,,,imaging assay,,
http://purl.obolibrary.org/obo/OBI_0002020,epigenetic modification assay,,"An assay that identifies epigenetic modifications including histone modifications, open chromatin, and DNA methylation.",false,,,http://purl.obolibrary.org/obo/GECKO_0000032,,,"An assay that identifies epigenetic modifications including histone modifications, open chromatin, and DNA methylation.",Penn group,,,,,,,,OBI:0002020,,,,,Epigenetics,genomics,,,epigenetic modification assay,,
http://purl.obolibrary.org/obo/MONDO_0005570,hematologic disease,hematological disorders and malignancies|disorder of hematopoietic system|blood dyscrasia NOS|disease of the blood and blood-forming organs|blood disorder|hematological system disease|disorder of hematopoietic system|rare hematologic disease|blood disease|hematological disease|disease of hematopoietic system|hematologic disorder|hematopoietic system disease or disorder|hematological disorder|hematopoietic system disease|blood dyscrasia|disease or disorder of hematopoietic system|hematopoietic disease|hematologic and lymphocytic disorder,A disease involving the hematopoietic system.|placeholder for lymphoid disease,false,,,http://purl.obolibrary.org/obo/MONDO_0000001,,placeholder for lymphoid disease,A disease involving the hematopoietic system.,,,,,disease of the blood and blood-forming organs|blood disorder|hematological system disease|disorder of hematopoietic system|rare hematologic disease|blood disease|hematological disease|disease of hematopoietic system|hematologic disorder|hematopoietic system disease or disorder|hematological disorder|hematopoietic system disease|blood dyscrasia|disease or disorder of hematopoietic system|hematopoietic disease|hematologic and lymphocytic disorder,,hematological disorders and malignancies|disorder of hematopoietic system|blood dyscrasia NOS,,MONDO:0005570,,,,,blood-related disorders,diseases,,,hematologic disease,,https://github.com/monarch-initiative/mondo/issues/254
http://purl.obolibrary.org/obo/IAO_0000030,information content entity,,A generically dependent continuant that is about some thing.,false,,,http://www.w3.org/2002/07/owl#Thing,,,A generically dependent continuant that is about some thing.,OBI_0000142,"Examples of information content entites include journal articles, data, graphical layouts, and graphs.",,,,,,,IAO:0000030,,,,,,,,,information content entity,,
http://purl.obolibrary.org/obo/GECKO_0000094,disease treated by prescription drug,,Information that is about the disease treated by a drug prescribed to an individual.,false,,,http://purl.obolibrary.org/obo/IAO_0000030,,,Information that is about the disease treated by a drug prescribed to an individual.,,,,,,,,http://purl.obolibrary.org/obo/GECKO_0000093,GECKO:0000094,http://purl.obolibrary.org/obo/GECKO_0000093,,,,associated disease(s),medication,,,disease treated by prescription drug,,
http://purl.obolibrary.org/obo/IAO_0020000,identifier,,An identifier is an information content entity that is the outcome of a dubbing process and is used to refer to one instance of entity shared by a group of people to refer to that individual entity.,false,,,http://purl.obolibrary.org/obo/IAO_0000030,,,An identifier is an information content entity that is the outcome of a dubbing process and is used to refer to one instance of entity shared by a group of people to refer to that individual entity.,,,,,,,,,IAO:0020000,,,,,,,,,identifier,,
http://purl.obolibrary.org/obo/CMO_0000000,clinical measurement data item,,,false,,,http://purl.obolibrary.org/obo/IAO_0000109,,,,,,,,,,,,CMO:0000000,,,,,physiological measurements,questionnaire/survey data,,,clinical measurement data item,,
http://purl.obolibrary.org/obo/OBI_0000094,material processing,,A planned process which results in physical changes in a specified input material,false,,,http://purl.obolibrary.org/obo/OBI_0000011,material transformation,,A planned process which results in physical changes in a specified input material,OBI branch derived,"A cell lysis, production of a cloning vector, creating a buffer.",,,,,,,OBI:0000094,,,,,,,,,material processing,,
http://purl.obolibrary.org/obo/UBERON_0000178,blood,whole blood|vertebrate blood|portion of blood,A fluid that is composed of blood plasma and erythrocytes.,false,,,http://purl.obolibrary.org/obo/UBERON_0000463,,,A fluid that is composed of blood plasma and erythrocytes.,,,,,vertebrate blood|portion of blood,,whole blood,,UBERON:0000178,,,,,blood,sample type,,,blood,,
http://purl.obolibrary.org/obo/GECKO_0000125,physical therapy history,,A non-pharmacological treatment history that is about physical therapy treatments such as physical rehabilitation.,false,,,http://purl.obolibrary.org/obo/GECKO_0000091,,,A non-pharmacological treatment history that is about physical therapy treatments such as physical rehabilitation.,,,,,,,,,GECKO:0000125,,,,,physical therapy interventions,non-pharmacological interventions,,,physical therapy history,,
http://purl.obolibrary.org/obo/MONDO_0002118,urinary system disease,"urinary tract diseases|urological diseases|urological disease|urological disorder|disease, urinary tract|disease, urologic|diseases, urinary tract|urinary system disorder|diseases, urologic|disease, urological|urologic disease|disorder of renal system|urinary disease|diseases, urological|disorder of urinary system|urinary system disease|disease of renal system|renal system disease or disorder|urinary tract disease|renal system disease|non-neoplastic urinary tract disease|renal disease|disorder of renal system|disorder of the urinary system|urologic disorder|urological disorders|urinary tract disorder|disease or disorder of renal system",A disease involving the renal system.,false,,,http://purl.obolibrary.org/obo/MONDO_0000001,,,A disease involving the renal system.,,,,,disorder of urinary system|urinary system disease|disease of renal system|renal system disease or disorder|urinary tract disease|renal system disease|non-neoplastic urinary tract disease|renal disease|disorder of renal system|disorder of the urinary system|urologic disorder|urological disorders|urinary tract disorder|disease or disorder of renal system,,"urinary tract diseases|urological diseases|urological disease|urological disorder|disease, urinary tract|disease, urologic|diseases, urinary tract|urinary system disorder|diseases, urologic|disease, urological|urologic disease|disorder of renal system|urinary disease|diseases, urological",,MONDO:0002118,,,,,urinary system diseases,diseases,,,urinary system disease,,
http://purl.obolibrary.org/obo/MONDO_0005046,immune system disease,"disorder of immune system|immune disorder, NOS|disease or disorder of immune system|immune system disorder|disease of immune system|disorder of immune system|immune disorder|immune system disease or disorder|immune dysfunction|immune disease",A disorder resulting from an abnormality in the immune system.,false,,,http://purl.obolibrary.org/obo/MONDO_0000001,,,A disorder resulting from an abnormality in the immune system.,,,,,disease or disorder of immune system|immune system disorder|disease of immune system|disorder of immune system|immune disorder|immune system disease or disorder|immune dysfunction|immune disease,,"disorder of immune system|immune disorder, NOS",,MONDO:0005046,,,,,immune system diseases,diseases,,,immune system disease,,
http://purl.obolibrary.org/obo/BFO_0000019,quality,,,false,,,http://www.w3.org/2002/07/owl#Thing,,,,,the color of a tomato|the ambient temperature of this portion of air|the length of the circumference of your waist|the mass of this piece of gold.|the shape of your nostril|the shape of your nose,,,,,,,BFO:0000019,,,,,,,,,quality,,
http://purl.obolibrary.org/obo/OMRSE_00000501,income data,,,false,,,http://purl.obolibrary.org/obo/IAO_0000027,,,,,,,,,,,,OMRSE:00000501,,,,,income and possessions,socio-demographic and economic characteristics,,,income data,,
http://purl.obolibrary.org/obo/OBI_0001271,RNA-seq assay,,An transcription profiling assay that determines an RNA sequence by analyzing the transcibed regions of the genome and or to quantitate transcript abundance.,false,,,http://purl.obolibrary.org/obo/GECKO_0000032,transcription profiling by high throughput sequencing,,An transcription profiling assay that determines an RNA sequence by analyzing the transcibed regions of the genome and or to quantitate transcript abundance.,EFO:0002770,,,,,,,,OBI:0001271,,,,,RNAseq/gene expression,genomics,,,RNA-seq assay,,
http://purl.obolibrary.org/obo/IAO_0000310,document,,A collection of information content entities intended to be understood together as a whole,false,,,http://purl.obolibrary.org/obo/IAO_0000030,,,A collection of information content entities intended to be understood together as a whole,,"A journal article, patent application, laboratory notebook, or a book",,,,,,,IAO:0000310,,,,,,,,,document,,
http://purl.obolibrary.org/obo/GECKO_0000139,Penn Computerized Neurocognitive Battery score,,A cognitive measurement that is the output (score) from the Penn Computerized Neurocognitive Battery.,false,,,http://purl.obolibrary.org/obo/GECKO_0000119,,,A cognitive measurement that is the output (score) from the Penn Computerized Neurocognitive Battery.,,,,,,,,,GECKO:0000139,,,,,Penn CNB,cognitive functioning,,,Penn Computerized Neurocognitive Battery score,,
http://purl.obolibrary.org/obo/GECKO_0000136,native language of individual,,Information about the language an individual has been exposed to from birth and is their first language.,false,,,http://purl.obolibrary.org/obo/IAO_0000030,,,Information about the language an individual has been exposed to from birth and is their first language.,url:https://en.wikipedia.org/wiki/First_language,,,,,,,,GECKO:0000136,,,,,native language,socio-demographic and economic characteristics,,,native language of individual,,
http://purl.obolibrary.org/obo/GECKO_0000106,sample size,,"A count which represents the subset of a collection chosen for an investigation, survey, or assay.",false,,,http://purl.obolibrary.org/obo/STATO_0000047,,,"A count which represents the subset of a collection chosen for an investigation, survey, or assay.",,,,,,,,,GECKO:0000106,,,,,,,,,sample size,,
http://purl.obolibrary.org/obo/GECKO_0000122,oral health history,,A lifestyle history that is about oral health and hygiene.,false,,,http://purl.obolibrary.org/obo/GECKO_0000067,,,A lifestyle history that is about oral health and hygiene.,,,,,,,,,GECKO:0000122,,,,,oral health history,lifestyle and behaviours,,,oral health history,,
http://purl.obolibrary.org/obo/CMO_0000012,body weight data item,,,false,,,http://purl.obolibrary.org/obo/CMO_0000021,,,,,,,,,,,,CMO:0000012,,,,,weight,anthropometry,,,body weight data item,,
http://purl.obolibrary.org/obo/GECKO_0000032,genomic assay,,An assay that investigates the genome or genomes of an individual organism or population of organisms.|Merged GECKO 'data type' into 'genomics'.,false,,,http://purl.obolibrary.org/obo/OBI_0000070,,Merged GECKO 'data type' into 'genomics'.,An assay that investigates the genome or genomes of an individual organism or population of organisms.,,,,,,,,,GECKO:0000032,,,,,genomics,laboratory measures,,,genomic assay,,
http://purl.obolibrary.org/obo/PATO_0000047,biological sex,,An organismal quality inhering in a bearer by virtue of the bearer's ability to undergo sexual reproduction in order to differentiate the individuals or types involved.,false,,,http://purl.obolibrary.org/obo/PATO_0001995,,,An organismal quality inhering in a bearer by virtue of the bearer's ability to undergo sexual reproduction in order to differentiate the individuals or types involved.,,,,,,,,,PATO:0000047,,,,,biological sex,socio-demographic and economic characteristics,,,biological sex,,
http://purl.obolibrary.org/obo/GECKO_0000012,population age range,,A population quality concerning the age range of a population.,false,,,http://purl.obolibrary.org/obo/GECKO_0000009,,,A population quality concerning the age range of a population.,,,,,,,,,GECKO:0000012,,,,,age range,demographic data,,,population age range,,
http://purl.obolibrary.org/obo/EUPATH_0000374,marital status,,a categorical value specification that is about a human being and specifies whether that human being is joined to another human being in marriage,false,,,http://purl.obolibrary.org/obo/IAO_0000030,,,a categorical value specification that is about a human being and specifies whether that human being is joined to another human being in marriage,"EuPathDB, BFO's 'relational quality' examples",,,,,,,,EUPATH:0000374,,,,,marital status,socio-demographic and economic characteristics,,,marital status,,
http://purl.obolibrary.org/obo/GECKO_0000137,Montreal Cognitive Assessment Test score,,A cognitive measurement that is the output (score) from the Montreal Cognitive Assessment Test (MoCA) for Dementia,false,,,http://purl.obolibrary.org/obo/GECKO_0000119,,,A cognitive measurement that is the output (score) from the Montreal Cognitive Assessment Test (MoCA) for Dementia,,,,,,,,,GECKO:0000137,,,,,MoCA,cognitive functioning,,,Montreal Cognitive Assessment Test score,,
http://purl.obolibrary.org/obo/UBERON_0000105,life cycle stage,developmental stage|stage,A spatiotemporal region encompassing some part of the life cycle of an organism.,false,,,http://purl.obolibrary.org/obo/BFO_0000015,,,A spatiotemporal region encompassing some part of the life cycle of an organism.,,,,,,developmental stage|stage,,,UBERON:0000105,,,,,life stage/time point,other questionnaire/survey data,,,life cycle stage,,
http://purl.obolibrary.org/obo/GECKO_0000061,ethnicity,,An organismal quality inhering in a bearer by virtue of the bearer's identification with a group of other individuals on the basis of presumed similarities such as language or common ancestry.,false,,,http://purl.obolibrary.org/obo/PATO_0001995,,,An organismal quality inhering in a bearer by virtue of the bearer's identification with a group of other individuals on the basis of presumed similarities such as language or common ancestry.,Wikipedia:Ethnic_group,,,,,,,,GECKO:0000061,,,,,ethnicity/race,socio-demographic and economic characteristics,,,ethnicity,,
http://purl.obolibrary.org/obo/IAO_0000104,plan specification,,"A directive information entity with action specifications and objective specifications as parts that, when concretized, is realized in a process in which the bearer tries to achieve the objectives by taking the actions specified.|2/3/2009 Comment from OBI review.

Action specification not well enough specified.
Conditional specification not well enough specified.
Question whether all plan specifications have objective specifications.

Request that IAO either clarify these or change definitions not to use them",false,,,http://purl.obolibrary.org/obo/IAO_0000033,,"2/3/2009 Comment from OBI review.

Action specification not well enough specified.
Conditional specification not well enough specified.
Question whether all plan specifications have objective specifications.

Request that IAO either clarify these or change definitions not to use them","A directive information entity with action specifications and objective specifications as parts that, when concretized, is realized in a process in which the bearer tries to achieve the objectives by taking the actions specified.",OBI Plan and Planned Process branch|OBI_0000344,PMID: 18323827.Nat Med. 2008 Mar;14(3):226.New plan proposed to help resolve conflicting medical advice.,,,,,,,IAO:0000104,,,,,,,,,plan specification,,
http://purl.obolibrary.org/obo/OBI_0000011,planned process,,A process that realizes a plan which is the concretization of a plan specification.,false,,,http://purl.obolibrary.org/obo/BFO_0000015,,,A process that realizes a plan which is the concretization of a plan specification.,branch derived,Injecting mice with a vaccine in order to test its efficacy,,,,,,,OBI:0000011,,,,,,,,,planned process,,
http://purl.obolibrary.org/obo/MONDO_0005087,respiratory system disease,disorder of respiratory system|respiratory disorder|disorder of respiratory system|respiratory system disease|respiratory system disorder|respiratory disease|respiratory system disease or disorder|disease of respiratory system|disease or disorder of respiratory system,"A non-neoplastic or neoplastic disorder that affects the respiratory system. Representative examples include pneumonia, chronic obstructive pulmonary disease, pulmonary failure, lung adenoma, lung carcinoma, and tracheal carcinoma.",false,,,http://purl.obolibrary.org/obo/MONDO_0000001,,,"A non-neoplastic or neoplastic disorder that affects the respiratory system. Representative examples include pneumonia, chronic obstructive pulmonary disease, pulmonary failure, lung adenoma, lung carcinoma, and tracheal carcinoma.",,,,,respiratory disorder|disorder of respiratory system|respiratory system disease|respiratory system disorder|respiratory disease|respiratory system disease or disorder|disease of respiratory system|disease or disorder of respiratory system,,disorder of respiratory system,,MONDO:0005087,,,,,respiratory system diseases,diseases,,,respiratory system disease,,
http://purl.obolibrary.org/obo/MONDO_0002051,integumentary system disease,disorder of integument|disorder of integumental system|disease of integumental system|integumental system disease or disorder|integumental system disease|disease or disorder of integumental system|disorder of integumental system|integumentary disease,A disease involving the integumental system.,false,,,http://purl.obolibrary.org/obo/MONDO_0000001,,,A disease involving the integumental system.,,,MONDO:0045027,,disease of integumental system|integumental system disease or disorder|integumental system disease|disease or disorder of integumental system|disorder of integumental system|integumentary disease,,disorder of integument|disorder of integumental system,,MONDO:0002051,,,,,skin and subcutaneous tissue diseases,diseases,,,integumentary system disease,,
http://purl.obolibrary.org/obo/BFO_0000141,immaterial entity,,,false,,,http://www.w3.org/2002/07/owl#Thing,,,,,,,,,,,,BFO:0000141,,,,,,,,,immaterial entity,,
http://purl.obolibrary.org/obo/IAO_0000612,availability textual entity,,"A textual entity expressing the location of a resource, e.g. software, or the manner in which a resource can be obtained.",false,,,http://purl.obolibrary.org/obo/IAO_0000300,,,"A textual entity expressing the location of a resource, e.g. software, or the manner in which a resource can be obtained.",,"From Qi et al. BMC Bioinformatics. 2014; 15: 11. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3897912/):

Project home page:http://krux.googlecode.com",,,,,,,IAO:0000612,,,,,,,,,availability textual entity,,
http://purl.obolibrary.org/obo/GECKO_0000118,psychological measurement,,A measurement datum of some aspect of human psychology.|See also EFO:0009095,false,,,http://purl.obolibrary.org/obo/IAO_0000109,,See also EFO:0009095,A measurement datum of some aspect of human psychology.,EFO:0009095,,,,,,,,GECKO:0000118,,,,,cognitive and psychological measurements,questionnaire/survey data,,,psychological measurement,,
http://purl.obolibrary.org/obo/BFO_0000040,material entity,,,false,,,http://www.w3.org/2002/07/owl#Thing,,,,,an aggregate of human beings.|a forest fire|a tornado|a human being|an energy wave|the undetached arm of a human being|an epidemic|a flame|a photon|a sea wave|a puff of smoke|a hurricane,,,,,,,BFO:0000040,,,,,,,,,material entity,,
http://purl.obolibrary.org/obo/GECKO_0000064,residence location,,A geographical location in which an individual currently resides.,false,,,http://purl.obolibrary.org/obo/BFO_0000029,,,A geographical location in which an individual currently resides.,,,,,,,,,GECKO:0000064,,,,,residence,socio-demographic and economic characteristics,,,residence location,,
http://purl.obolibrary.org/obo/MF_0000041,belief,,,false,,,http://purl.obolibrary.org/obo/BFO_0000016,,,,,,,,,,,,MF:0000041,,,,,personal beliefs and values,other questionnaire/survey data,,,belief,,
http://purl.obolibrary.org/obo/GECKO_0000104,physical activity history,,A lifestyle history that is about the typical physical activity of an individual.,false,,,http://purl.obolibrary.org/obo/GECKO_0000067,,,A lifestyle history that is about the typical physical activity of an individual.,,,,,,,,,GECKO:0000104,,,,,physical activity history,lifestyle and behaviours,,,physical activity history,,
http://purl.obolibrary.org/obo/UBERON_0000463,organism substance,body fluid or substance|portion of organism substance|body substance|portion of body substance|organism substance,"Material anatomical entity in a gaseous, liquid, semisolid or solid state; produced by anatomical structures or derived from inhaled and ingested substances that have been modified by anatomical structures as they pass through the body.",false,,,http://purl.obolibrary.org/obo/BFO_0000040,,,"Material anatomical entity in a gaseous, liquid, semisolid or solid state; produced by anatomical structures or derived from inhaled and ingested substances that have been modified by anatomical structures as they pass through the body.",,,,,body fluid or substance|portion of organism substance|body substance|portion of body substance|organism substance,,,,UBERON:0000463,,,,,sample type,biosample,,,organism substance,,
http://purl.obolibrary.org/obo/GECKO_0000066,family and household structure,,Information that is about the structure of an individual's family and/or household.,false,,,http://purl.obolibrary.org/obo/IAO_0000030,,,Information that is about the structure of an individual's family and/or household.,,,,,,,,,GECKO:0000066,,,,,family and household structure,socio-demographic and economic characteristics,,,family and household structure,,
http://purl.obolibrary.org/obo/GECKO_0000067,lifestyle history,,A clinical history that is about the lifestyle and behaviors of an individual which may impact health outcomes.,false,,,http://purl.obolibrary.org/obo/OGMS_0000015,,,A clinical history that is about the lifestyle and behaviors of an individual which may impact health outcomes.,,,,,,,,,GECKO:0000067,,,,,lifestyle and behaviours,questionnaire/survey data,,,lifestyle history,,
http://purl.obolibrary.org/obo/OBI_0002623,whole metagenome sequencing assay,,A DNA sequencing assay that intends to provide information on the DNA sequences of multiple genomes (a metagenome) from different organisms present in the same input sample.,false,,,http://purl.obolibrary.org/obo/GECKO_0000032,WMS,,A DNA sequencing assay that intends to provide information on the DNA sequences of multiple genomes (a metagenome) from different organisms present in the same input sample.,Bjoern Peters|Michelle Giglio,,,,,,,,OBI:0002623,,,,,Metagenomics,genomics,,,whole metagenome sequencing assay,,
http://purl.obolibrary.org/obo/GECKO_0000092,surgical history,,A clinical history that is about surgical operations performed on an individual.,false,,,http://purl.obolibrary.org/obo/GECKO_0000091,,,A clinical history that is about surgical operations performed on an individual.,,,,,,,,,GECKO:0000092,,,,,surgical interventions,non-pharmacological interventions,,,surgical history,,
http://purl.obolibrary.org/obo/CMO_0000003,blood pressure measurement data item,,,false,,,http://purl.obolibrary.org/obo/CMO_0000001,,,,,,,,,,,,CMO:0000003,,,,,blood pressure,circulation and respiration,,,blood pressure measurement data item,,
http://purl.obolibrary.org/obo/GECKO_0000128,information on functional limitations,,Information that is about an individual's limitations in activities that involve caring for an moving the body.,false,,,http://purl.obolibrary.org/obo/IAO_0000030,,,Information that is about an individual's limitations in activities that involve caring for an moving the body.,Maelstrom:Act_daily_living,,,,,,,,GECKO:0000128,,,,,functional limitations,perception of health and quality of life,,,information on functional limitations,,
http://purl.obolibrary.org/obo/GECKO_0000138,CERAD Neuropsychological Battery score,,A cognitive measurement that is the output (score) from the CERAD Neurophyschological Battery.,false,,,http://purl.obolibrary.org/obo/GECKO_0000119,,,A cognitive measurement that is the output (score) from the CERAD Neurophyschological Battery.,,,,,,,,,GECKO:0000138,,,,,CERAD Battery,cognitive functioning,,,CERAD Neuropsychological Battery score,,
http://purl.obolibrary.org/obo/MONDO_0005084,mental disorder,disorder of mental process|disorder of mental process|mental or behavioural disorder|mental process disease,A disease that has its basis in the disruption of mental process.,false,,,http://purl.obolibrary.org/obo/MONDO_0000001,,,A disease that has its basis in the disruption of mental process.,,,,,disorder of mental process|mental or behavioural disorder|mental process disease,,disorder of mental process,,MONDO:0005084,,,,,mental and behaviour disorders,diseases,,,mental disorder,,
http://purl.obolibrary.org/obo/PDRO_0010022,drug administration specification,,"A drug administration description that specifies a drug administration prescribed or reported by an healthcare provider.

It specifies:
- The drug product
- The posology

It may also specify a starting drug administration condition",false,,,http://purl.obolibrary.org/obo/IAO_0000033,,,"A drug administration description that specifies a drug administration prescribed or reported by an healthcare provider.

It specifies:
- The drug product
- The posology

It may also specify a starting drug administration condition",,"'take Aspirin 81 mg oral tablet, 1 tablet once daily by mouth, start today' or the synonymous abbreviated version 'Aspirin 81 mg tablet PO DIE'",,,,,,,PDRO:0010022,,,,,administration,medication,,,drug administration specification,,
http://purl.obolibrary.org/obo/GECKO_0000072,nutritional history,,A lifestyle history that is about the diet and nutrition of an individual.,false,,,http://purl.obolibrary.org/obo/GECKO_0000067,,,A lifestyle history that is about the diet and nutrition of an individual.,,,,,,,,,GECKO:0000072,,,,,dietary history,lifestyle and behaviours,,,nutritional history,,
http://purl.obolibrary.org/obo/GECKO_0000127,quality of life measurement,,A psychological measurement of an individual's perception of their quality of life.,false,,,http://purl.obolibrary.org/obo/GECKO_0000118,,,A psychological measurement of an individual's perception of their quality of life.,,,,,,,,,GECKO:0000127,,,,,quality of life,perception of health and quality of life,,,quality of life measurement,,
http://purl.obolibrary.org/obo/GECKO_0000120,personality measurement,,"A psychological measurement of a person's individual sets of behaviours, cognitions, and emotional patterns.",false,,,http://purl.obolibrary.org/obo/GECKO_0000118,,,"A psychological measurement of a person's individual sets of behaviours, cognitions, and emotional patterns.",Wikipedia:Personality,,,,,,,,GECKO:0000120,,,,,personality,cognitive and psychological measurements,,,personality measurement,,
http://purl.obolibrary.org/obo/OGMS_0000015,clinical history,,A series of statements representing health-relevant qualities of a patient and of a patient's family.,false,,,http://purl.obolibrary.org/obo/IAO_0000030,,,A series of statements representing health-relevant qualities of a patient and of a patient's family.,http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf,,,,,,,,OGMS:0000015,,,,,,,,,clinical history,,
http://purl.obolibrary.org/obo/MONDO_0005151,endocrine system disease,disorder of endocrine system|endocrine system disease or disorder|disease of endocrine system|endocrine system disorder|endocrinopathy|endocrine system disease|disease or disorder of endocrine system|thyroid or other glandular disorders|endocrine disease|endocrine disorder|disorder of endocrine system,A disease involving the endocrine system.,false,,,http://purl.obolibrary.org/obo/MONDO_0000001,,,A disease involving the endocrine system.,,,,,endocrine system disease or disorder|disease of endocrine system|endocrine system disorder|endocrinopathy|endocrine system disease|disease or disorder of endocrine system|thyroid or other glandular disorders|endocrine disease|endocrine disorder|disorder of endocrine system,,disorder of endocrine system,,MONDO:0005151,,,,,endocrine system diseases,diseases,,,endocrine system disease,,
http://purl.obolibrary.org/obo/PCO_0000000,collection of organisms,,"A material entity that consists of two or more organisms, viruses, or viroids.|May be of the same or different species.",false,,,http://purl.obolibrary.org/obo/BFO_0000040,organism collection|group of organism,May be of the same or different species.,"A material entity that consists of two or more organisms, viruses, or viroids.",,"Examples include: population, community, species (meaning the collection of organisms that makes up a species, not the taxonomic rank), and family.",,,,,,,PCO:0000000,,,,,,,,,collection of organisms,,
