Class ID,Preferred Label,Synonyms,Definitions,Obsolete,CUI,Semantic Types,Parents,2D boundary of,abbreviation,acronym,alternative label,ambiguous synonym,antisymmetric property,BFO CLIF specification label,BFO OWL specification label,characteristic of,concretizes,contains process,curator note,defined by construct,definition,definition source,denoted by,denotes,DEPRECATED bearer of,DEPRECATED inheres in,derives from,derives into,disposition of,dubious synonym,editor note,editor preferred term,elucidation,example of usage,expand assertion to,expand expression to,first order logic expression,function of,has 2D boundary,has associated axiom(fol),has associated axiom(nl),has axiom label,has broad synonym,has characteristic,has coordinate unit label,has cross-reference,has curation status,has disposition,has exact synonym,has function,has ID digit count,has ID policy for,has ID prefix,has ID range allocated to,has measurement datum,has measurement unit label,has measurement value,has member,has narrow synonym,has obsolescence reason,has ontology hierarchical property,has ontology root term,has part,has participant,has quality,has related synonym,has role,has specified input,has specified output,has symbol,has time stamp,has x coordinate value,has y coordinate value,has z coordinate value,http://data.bioontology.org/metadata/obo/part_of,http://data.bioontology.org/metadata/prefixIRI,http://data.bioontology.org/metadata/treeView,http://protege.stanford.edu/plugins/owl/protege#defaultLanguage,http://purl.org/dc/elements/1.1/contributor,http://purl.org/dc/elements/1.1/coverage,http://purl.org/dc/elements/1.1/creator,http://purl.org/dc/elements/1.1/date,http://purl.org/dc/elements/1.1/description,http://purl.org/dc/elements/1.1/format,http://purl.org/dc/elements/1.1/identifier,http://purl.org/dc/elements/1.1/language,http://purl.org/dc/elements/1.1/license,http://purl.org/dc/elements/1.1/member,http://purl.org/dc/elements/1.1/publisher,http://purl.org/dc/elements/1.1/relation,http://purl.org/dc/elements/1.1/rights,http://purl.org/dc/elements/1.1/source,http://purl.org/dc/elements/1.1/subject,http://purl.org/dc/elements/1.1/title,http://purl.org/dc/elements/1.1/type,http://purl.org/dc/terms/contributor,http://purl.org/dc/terms/created,http://purl.org/dc/terms/license,http://purl.org/dc/terms/source,http://www.geneontology.org/formats/oboInOwl#created_by,http://www.geneontology.org/formats/oboInOwl#creation_date,http://www.geneontology.org/formats/oboInOwl#ObsoleteProperty,http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty,http://www.w3.org/2000/01/rdf-schema#comment,http://www.w3.org/2000/01/rdf-schema#isDefinedBy,http://www.w3.org/2000/01/rdf-schema#label,http://www.w3.org/2000/01/rdf-schema#seeAlso,http://xmlns.com/foaf/0.1/homepage,http://xmlns.com/foaf/0.1/mbox,http://xmlns.com/foaf/0.1/page,imported from,in branch,International Nonproprietary Name,is about,is allocated id range,is concretized as,is denotator type,is directed towards,is duration of,is quality measured as,is quality measurement of,is quality specification of,is specified input of,is specified output of,latin term,layperson synonym,legal name,located in,location of,logical characteristic of object property,may be identical to,member of,mentioned by,mentions,misnomer,misspelling,OBO foundry unique label,obsolete_describes,obsolete_materially denotes,obsolete_represents,obsolete_specifically denotes,occurs in,ontology term requester,part of,participates in,plural form,preferred label for community,previous name,quality is specified as,quality of,realized in,realizes,retired from use as of,role of,scheduled for obsoletion on or after,temporal interpretation,term editor,term replaced by,term tracker item,UK spelling synonym
http://purl.obolibrary.org/obo/IAO_0000594,software application,,A software application is software that can be directly executed by some processing unit.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000010,,,,,,,,,,,,,,A software application is software that can be directly executed by some processing unit.,https://github.com/information-artifact-ontology/IAO/issues/80,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000123,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000594,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,software application,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Melanie Courtot|PERSON: Michel Dumontier,,,
http://purl.obolibrary.org/obo/IAO_0000006,narrative object,,A narrative object is an information content entity that is a set of propositions.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000030,,,,,,,,,,,,,,A narrative object is an information content entity that is a set of propositions.,OBI_0000013|group:OBI,,,,,,,,,"2009-08-10 Alan Ruttenberg: Larry Hunter suggests that this be obsoleted and replaced by 'textual entity' and 'figure'. Alan restored as there are OBI dependencies and this merits further discussion|agree - DENRIE. Issue(alan) do we only mean text? What about a story told by mime. Does music count? (no) what about an oral report. Regarding definition, saying it is a set of propositions means we loose the idea that wording matters. Maybe adjust saying a narrative object has some relationshop to a set of propositions",narrative object,,"Examples of narrative objects are reports, journal  articles, and patents submission.",,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000123,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000006,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,narrative object,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,person:Chris Stoeckert,,,
http://purl.obolibrary.org/obo/PATO_0000122,length,,A 1-D extent quality which is equal to the distance between two points.,FALSE,,,http://purl.obolibrary.org/obo/PATO_0000051,,,,,,,,,,,,,,A 1-D extent quality which is equal to the distance between two points.,,,,,,,,,,,length,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PATO:0000122,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,length,,,,,http://purl.obolibrary.org/obo/pato.owl,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/PATO_0000125,mass,,A physical quality that inheres in a bearer by virtue of the proportion of the bearer's amount of matter.,FALSE,,,http://purl.obolibrary.org/obo/PATO_0001018,,,,,,,,,,,,,,A physical quality that inheres in a bearer by virtue of the proportion of the bearer's amount of matter.,,,,,,,,,,,mass,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PATO:0000125,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,mass,,,,,http://purl.obolibrary.org/obo/pato.owl,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000609,author summary section,summary|synopsis|author summary,"A part of a document, distinct from the abstract, that describes the significance and broader context of the document content. The author summary is often written in a non-technical manner and is aimed at both scientists and non-scientist readers.",FALSE,,,http://purl.obolibrary.org/obo/IAO_0000314,,,,summary|synopsis|author summary,,,,,,,,,,"A part of a document, distinct from the abstract, that describes the significance and broader context of the document content. The author summary is often written in a non-technical manner and is aimed at both scientists and non-scientist readers.",Article submission guidelines for PLoS Genetics (http://journals.plos.org/plosgenetics/s/submission-guidelines),,,,,,,,,,author summary section,,"The section labelled 'synopsis' in a typical scientific journal article, e.g. in Pendse et al. BMC Genomics. 2013; 14: 136. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3608171/)",,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000610,,,,,,,,,,,,,IAO:0000609,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,author summary section,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Bill Baumgartner,,https://github.com/information-artifact-ontology/IAO/issues/183,
http://purl.obolibrary.org/obo/IAO_0000312,publication about an investigation,scientific publication,A publication that is about an investigation,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000311,,,,scientific publication,,,,,,,,,,A publication that is about an investigation,,,,,,,,,,,publication about an investigation,,Most scientific journal articles,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000120,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000312,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,publication about an investigation,,,,,,,,http://purl.obolibrary.org/obo/OBI_0000066,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Lawrence Hunter,,,
http://purl.obolibrary.org/obo/IAO_0000401,one dimensional cartesian spatial coordinate datum,,A cartesion spatial coordinate datum that  uses one value to specify a position along a one dimensional spatial region,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000400,,,,,,,,,,,,,,A cartesion spatial coordinate datum that  uses one value to specify a position along a one dimensional spatial region,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000123,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000401,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,one dimensional cartesian spatial coordinate datum,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Alan Ruttenberg,,,
http://purl.obolibrary.org/obo/IAO_8000009,single layer subset ontology module,ribbon subset,A subset ontology that is largely comprised of a single layer or strata in an ontology class hierarchy. The purpose is typically for rolling up for visualization. The classes in the layer need not be disjoint.,FALSE,,,http://purl.obolibrary.org/obo/IAO_8000006,,,,ribbon subset,,,,,,,,,,A subset ontology that is largely comprised of a single layer or strata in an ontology class hierarchy. The purpose is typically for rolling up for visualization. The classes in the layer need not be disjoint.,,,,,,,,,,,single layer ontology module,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:8000009,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,single layer subset ontology module,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000304,caption,,A textual entity that describes a figure,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000300,,,,,,,,,,,,,,A textual entity that describes a figure,,,,,,,,,,,caption,,"Figure 1: A system diagram describing the modules of the Hanalyzer.  Reading methods (green) take external sources of knowledge (blue) and extract information from them, either by parsing structured data or biomedical language processing to extract information from unstructured data.  Reading modules are responsible for tracking the provenance of all knowledge.  Reasoning methods (yellow) enrich the knowledge that results from reading by, for example, noting two genes that are annotated to the same ontology term or database entry.  All knowledge sources, read or reasoned, are assigned a reliability score, and all are combined using that score into a knowledge network (orange) that represents the integration of all sorts of relationship between a pair of genes and a combined reliability score.  A data network (also orange) is created from experimental results to be analyzed.  The reporting modules (pink) integrate the data and knowledge networks, producing visualizations that can be queried with the associated drill-down tool.",,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000125,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000304,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,caption,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000308,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Lawrence Hunter,,,
http://purl.obolibrary.org/obo/APOLLO_SV_00000796,dataset creating,data set creation|dataset creation,A planned process that has a data set as its specified output.,FALSE,,,http://purl.obolibrary.org/obo/COB_0000035,,,,data set creation|dataset creation,,,,,,,,,,A planned process that has a data set as its specified output.,,,,,,,,,,,creating a data set,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,APOLLO_SV:00000796,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,dataset creating,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,William R. Hogan,,,
http://purl.obolibrary.org/obo/IAO_0000651,title section,,the section of the document where the title appears,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000314,,,,,,,,,,,,,,the section of the document where the title appears,,,,,,,,,,"This term should not be confused with dc:title - this term represents the component of the document where the title appears, and not the value of the title itself.",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000651,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,title section,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Charles Tapley Hoyt,,https://github.com/information-artifact-ontology/IAO/issues/286,
http://purl.obolibrary.org/obo/IAO_0000595,software script,,A software script is software whose instructions can be executed using a software interpreter.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000010,,,,,,,,,,,,,,A software script is software whose instructions can be executed using a software interpreter.,https://github.com/information-artifact-ontology/IAO/issues/80,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000123,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000595,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,software script,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Melanie Courtot|PERSON: Michel Dumontier,,,
http://purl.obolibrary.org/obo/IAO_0000181,Venn diagram,,"A Venn diagram is a report graph showing all hypothetically possible
logical relations between a finite collection of sets.",FALSE,,,http://purl.obolibrary.org/obo/IAO_0000038,,,,,,,,,,,,,,"A Venn diagram is a report graph showing all hypothetically possible
logical relations between a finite collection of sets.",WEB: http://en.wikipedia.org/wiki/Venn_diagram,,,,,,,,,,Venn diagram,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000122,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000181,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Venn diagram,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON:James Malone|PERSON:Chris Stoeckert|PERSON:Melanie Courtot,,,
http://purl.obolibrary.org/obo/OBI_0000471,study design execution,,a planned process that carries out a study design,FALSE,,,http://purl.obolibrary.org/obo/COB_0000035,,,,,,,,,,,,,,a planned process that carries out a study design,,,,,,,,,,,study design execution,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OBI:0000471,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,study design execution,,,,,http://purl.obolibrary.org/obo/obi.owl,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000019,obsolete2_binary digital entity,,A binary digital entity is a digital entity that is encoded in a way that is not easily human readable and that contains other than text characters.,TRUE,,,http://www.geneontology.org/formats/oboInOwl#ObsoleteClass,,,,,,,,,,,,,,A binary digital entity is a digital entity that is encoded in a way that is not easily human readable and that contains other than text characters.,OBI_0000244|group:OBI,,,,,,,,,"3/22/2009 Alan Ruttenberg, obsoleted per http://groups.google.com/group/information-ontology/browse_thread/thread/789ad4b7708d5cf4
Superclass was 'digital entity'|digital_entity",binary digital entity,,"MS Word document, ZIP file, DICOM file, JPEG file",,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000103,,,,,,,,,,,,,,,,IAO:0000019,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,obsolete2_binary digital entity,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,person:Chris Stoeckert,,,
http://purl.obolibrary.org/obo/IAO_0000317,methods section,experimental procedures|method|experimental methods|experimental|experimental section|methodology|methods,A part of a publication about an investigation that is about the study design of the investigation,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000314,,,,experimental procedures|method|experimental methods|experimental|experimental section|methodology|methods,,,,,,,,,,A part of a publication about an investigation that is about the study design of the investigation,,,,,,,,,,,methods section,,The section labelled 'Methods' or 'Materials and Methods' in a typical scientific journal article.,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000120,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000317,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,methods section,,,,,,,,http://purl.obolibrary.org/obo/OBI_0500000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Lawrence Hunter,,https://github.com/information-artifact-ontology/IAO/issues/234,
http://purl.obolibrary.org/obo/IAO_0000055,rule,,"A rule is an executable which guides, defines, restricts actions.",FALSE,,,http://purl.obolibrary.org/obo/IAO_0000001,,,,,,,,,,,,,,"A rule is an executable which guides, defines, restricts actions.",OBI_0500021|PRS,,,,,,,,,MSI,rule,,example to be added,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000123,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000055,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,rule,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PRS,,,
http://purl.obolibrary.org/obo/APOLLO_SV_00000522,source code repository,,"A document that comprises at least one source code module and provenance data about who contributed the set of files making up the module(s), and optionally comprises also multiple versions of files with detailed change history about who committed files and when, a license for the software, readme files, documentation, executables, etc.",FALSE,,,http://purl.obolibrary.org/obo/IAO_0000310,,,,,,,,,,,,,,"A document that comprises at least one source code module and provenance data about who contributed the set of files making up the module(s), and optionally comprises also multiple versions of files with detailed change history about who committed files and when, a license for the software, readme files, documentation, executables, etc.",,,,,,,,,,,software source code version control repository,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000096,,,,,,,,,,,,,APOLLO_SV:00000522,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Refers to the stuff that lives on GitHub, not to GitHub or the git software on which it is based",,source code repository,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,William R. Hogan,,,
http://purl.obolibrary.org/obo/APOLLO_SV_00000524,compiling software,,A planned process that converts human-written or curated software into a machine-executable or interpretable set of instructions.,FALSE,,,http://purl.obolibrary.org/obo/APOLLO_SV_00000008,,,,,,,,,,,,,,A planned process that converts human-written or curated software into a machine-executable or interpretable set of instructions.,,,,,,,,,,,process of compiling software,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,APOLLO_SV:00000524,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Source code can be automatically generated to some extent, but we're assuming humans still curate it minimally. Also, in the case of Java and its JVM, it's machine interpretable instructions, not directly executable. Ditto for other languages with intermediate form like Java byte code.|It's compiling ""software"" (scare quotes) and not ""source code"" because you can compile Java bytecode to machine code, and Java bytecode is not technically ""source code"".  Compiling source code would be a subclass of this class (as would compiling Java bytecode, etc.).",,compiling software,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,William R. Hogan,,,
http://purl.obolibrary.org/obo/IAO_0020015,personal name,,An identifier referring to an individual entity that is ascribed personhood by the user of the identifier.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0020000,,,,,,,,,,,,,,An identifier referring to an individual entity that is ascribed personhood by the user of the identifier.,http://en.wikipedia.org/wiki/Personal_name,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0020015,,,,,,,,,,,,,,,,,,,,,,,,,,,,"Sep 29, 2016: The comment that including the wikipedia definition of personal name is not to be interpreted in a way that restricts this class to only contain strings of letters. A numerical or alphanumerical identifier that denotes a human is being is a personal name, too. (MB)|Personal names ""today usually comprises a given name bestowed at birth or at a young age plus a surname. It is nearly universal for a human to have a name; except in rare cases, for example feral children growing up in isolation, or infants orphaned by natural disaster for whom no written record survives.[citation needed] The Convention on the Rights of the Child specifies that a child has the right from birth to a name. Certain isolated tribes, such as the Machiguenga of the Amazon, also lack personal names."" (http://en.wikipedia.org/wiki/Personal_name)|Personal names to not include names of fictional characters, e.g. Sherlock Holmes.",,personal name,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Justin Whorton|Mathias Brochhausen,,https://github.com/information-artifact-ontology/IAO/issues/237,
http://purl.obolibrary.org/obo/IAO_0000008,obsolete_artifact,,,TRUE,,,http://www.geneontology.org/formats/oboInOwl#ObsoleteClass,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000103,,,,,,,,,,,,,,,,IAO:0000008,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,obsolete_artifact,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000064,algorithm,,A plan specification which describes the inputs and output of mathematical functions as well as workflow of execution for achieving an predefined objective. Algorithms are realized usually by means of implementation as computer programs for execution by automata.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000104,,,,,,,,,,,,,,A plan specification which describes the inputs and output of mathematical functions as well as workflow of execution for achieving an predefined objective. Algorithms are realized usually by means of implementation as computer programs for execution by automata.,"OBI_0000270|adapted from discussion on OBI list (Matthew Pocock, Christian Cocos, Alan Ruttenberg)",,,,,,,,,,algorithm,,PMID: 18378114.Genomics. 2008 Mar 28. LINKGEN: A new algorithm to process data in genetic linkage studies.,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000120,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000064,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,algorithm,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PlanAndPlannedProcess Branch|Philippe Rocca-Serra,,,
http://purl.obolibrary.org/obo/IAO_0000621,ethical approval textual entity,,A textual entity that documents the ethical approval of some study design.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000300,,,,,,,,,,,,,,A textual entity that documents the ethical approval of some study design.,,,,,,,,,,,ethical approval textual entity,,"From McLean et al. Br J Gen Pract. 2014 Jul; 64(624): e440–e447 (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4073730/):

The NHS National Research Ethics Service had previously approved the use of these anonymised data for research purposes and this analysis did not require independent review.",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000621,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,ethical approval textual entity,,,,,,,,http://purl.obolibrary.org/obo/OBI_0500000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Bill Baumgartner,,https://github.com/information-artifact-ontology/IAO/issues/183,
http://purl.obolibrary.org/obo/IAO_0000620,ethical approval section,ethical requirements|ethics|ethics statement|ethical approval,A part of a document about the governance body responsible for approving the work discussed in a document on an ethical basis.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000314,,,,ethical requirements|ethics|ethics statement|ethical approval,,,,,,,,,,A part of a document about the governance body responsible for approving the work discussed in a document on an ethical basis.,,,,,,,,,,,ethical approval section,,The section labelled 'ethical approval' in a typical scientific journal article.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000621,,,,,,,,,,,,,IAO:0000620,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,ethical approval section,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Bill Baumgartner,,https://github.com/information-artifact-ontology/IAO/issues/234|https://github.com/information-artifact-ontology/IAO/issues/183,
http://purl.obolibrary.org/obo/IAO_0000415,hypothesis textual entity,,A textual entity that expresses an assertion that is intended to be tested.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000300,,,,,,,,,,,,,,A textual entity that expresses an assertion that is intended to be tested.,,,,,,,,,,2009/09/28 Alan Ruttenberg. Fucoidan-use-case,hypothesis textual entity,,"that fucoidan has a small statistically significant effect on AT3 level but no useful clinical effect as in-vivo anticoagulant, a paraphrase of part of the last paragraph of the discussion section of the paper 'Pilot clinical study to evaluate the anticoagulant activity of fucoidan', by Lowenthal et. al.PMID:19696660",,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000120,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000415,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,hypothesis textual entity,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Person:Alan Ruttenberg,,,
http://purl.obolibrary.org/obo/IAO_0000422,postal address,,"A textual entity that is used as directive to deliver something to a person, or organization",FALSE,,,http://purl.obolibrary.org/obo/IAO_0000300,,,,,,,,,,,,,,"A textual entity that is used as directive to deliver something to a person, or organization",,,,,,,,,,2010-05-24 Alan Ruttenberg. Use label for the string representation. See issue https://github.com/information-artifact-ontology/IAO/issues/59,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000123,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000422,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,postal address,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000018,obsolete_material_entity,,,TRUE,,,http://www.geneontology.org/formats/oboInOwl#ObsoleteClass,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000226,,,,,,,,,,,,,,,,IAO:0000018,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,obsolete_material_entity,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000180,heatmap,,"A heatmap is a report graph which is a graphical representation of data
where the values taken by a variable(s) are shown as colors in a
two-dimensional map.",FALSE,,,http://purl.obolibrary.org/obo/IAO_0000038,,,,,,,,,,,,,,"A heatmap is a report graph which is a graphical representation of data
where the values taken by a variable(s) are shown as colors in a
two-dimensional map.",GROUP:OBI,,,,,,,,,,heatmap,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000122,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000180,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,heatmap,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON:James Malone|PERSON:Chris Stoeckert|PERSON:Melanie Courtot,,,
http://purl.obolibrary.org/obo/IAO_0000105,obsolete2_digital document,,A digital document is a digital entity consisting of an electronic file which can be rendered into human-readable form by one or more computational applications.  The digital document does not refer to the information content of the document but to an instance of the file.,TRUE,,,http://www.geneontology.org/formats/oboInOwl#ObsoleteClass,,,,,,,,,,,,,,A digital document is a digital entity consisting of an electronic file which can be rendered into human-readable form by one or more computational applications.  The digital document does not refer to the information content of the document but to an instance of the file.,OBI_0000195|group:OBI,,,,,,,,,"3/22/2009 Alan Ruttenberg, obsoleted per http://groups.google.com/group/information-ontology/browse_thread/thread/789ad4b7708d5cf4
superclass was 'digial entity'",digital document,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000103,,,,,,,,,,,,,,,,IAO:0000105,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,obsolete2_digital document,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,person:Jennifer Fostel,,,
http://purl.obolibrary.org/obo/IAO_0000033,directive information entity,,An information content entity whose concretizations indicate to their bearer how to realize them in a process.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000030,,,,,,,,,,,,,,An information content entity whose concretizations indicate to their bearer how to realize them in a process.,,,,,,,,,,"8/6/2009 Alan Ruttenberg: Changed label from ""information entity about a realizable"" after discussions at ICBO|Werner pushed back on calling it realizable information entity as it isn't realizable. However this name isn't right either. An example would be a recipe. The realizable entity would be a plan, but the information entity isn't about the plan, it, once concretized, *is* the plan. -Alan|2013-05-30 Alan Ruttenberg: What differentiates a directive information entity from an information concretization is that it can have concretizations that are either qualities or realizable entities. The concretizations that are realizable entities are created when an individual chooses to take up the direction, i.e. has the intention to (try to) realize it.|2009-03-16: provenance: a term realizable information entity was proposed for OBI (OBI_0000337) , edited by the PlanAndPlannedProcess branch. Original definition was  ""is the specification of a process that can be concretized and realized by an actor"" with alternative term  ""instruction"".It has been subsequently moved to IAO where the objective for which the original term was defined was satisfied with the definitionof this, different, term.",,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000122,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000033,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,directive information entity,,,,,,,,http://purl.obolibrary.org/obo/BFO_0000017,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Bjoern Peters|PERSON: Alan Ruttenberg,,,
http://purl.obolibrary.org/obo/BFO_0000015,process,,"p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])",FALSE,,,http://purl.obolibrary.org/obo/BFO_0000003,,,,,,,Process,process,,,,,,"p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])",,,,,,,,,,"BFO 2 Reference: The realm of occurrents is less pervasively marked by the presence of natural units than is the case in the realm of independent continuants. Thus there is here no counterpart of ‘object’. In BFO 1.0 ‘process’ served as such a counterpart. In BFO 2.0 ‘process’ is, rather, the occurrent counterpart of ‘material entity’. Those natural – as contrasted with engineered, which here means: deliberately executed – units which do exist in the realm of occurrents are typically either parasitic on the existence of natural units on the continuant side, or they are fiat in nature. Thus we can count lives; we can count football games; we can count chemical reactions performed in experiments or in chemical manufacturing. We cannot count the processes taking place, for instance, in an episode of insect mating behavior.Even where natural units are identifiable, for example cycles in a cyclical process such as the beating of a heart or an organism’s sleep/wake cycle, the processes in question form a sequence with no discontinuities (temporal gaps) of the sort that we find for instance where billiard balls or zebrafish or planets are separated by clear spatial gaps. Lives of organisms are process units, but they too unfold in a continuous series from other, prior processes such as fertilization, and they unfold in turn in continuous series of post-life processes such as post-mortem decay. Clear examples of boundaries of processes are almost always of the fiat sort (midnight, a time of death as declared in an operating theater or on a death certificate, the initiation of a state of war)",,,"the life of an organism|the course of a disease|the flight of a bird|a process of sleeping|your process of aging.|a process of cell-division, \ a beating of the heart|a process of meiosis",,,,,,(iff (Process a) (and (Occurrent a) (exists (b) (properTemporalPartOf b a)) (exists (c t) (and (MaterialEntity c) (specificallyDependsOnAt a c t))))) // axiom label in BFO2 CLIF: [083-003] ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000015,,,,,,,,,,,,,,,,,,,,,,,,,,,,"An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t.",http://purl.obolibrary.org/obo/bfo.owl,process,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_8000011,external import ontology module,external import,An imported ontology module that is derived from an external ontology. Derivation methods include the OWLAPI SLME approach.,FALSE,,,http://purl.obolibrary.org/obo/IAO_8000005,,,,external import,,,,,,,,,,An imported ontology module that is derived from an external ontology. Derivation methods include the OWLAPI SLME approach.,,,,,,,,,,,external import ontology module,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:8000011,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,external import ontology module,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/BFO_0000001,entity,,,FALSE,,,http://www.w3.org/2002/07/owl#Thing,,,,,,,Entity,entity,,,,,,,,,,,,,,,,"BFO 2 Reference: In all areas of empirical inquiry we encounter general terms of two sorts. First are general terms which refer to universals or types:animaltuberculosissurgical procedurediseaseSecond, are general terms used to refer to groups of entities which instantiate a given universal but do not correspond to the extension of any subuniversal of that universal because there is nothing intrinsic to the entities in question by virtue of which they – and only they – are counted as belonging to the given group. Examples are: animal purchased by the Emperortuberculosis diagnosed on a Wednesdaysurgical procedure performed on a patient from Stockholmperson identified as candidate for clinical trial #2056-555person who is signatory of Form 656-PPVpainting by Leonardo da VinciSuch terms, which represent what are called ‘specializations’ in [81|Entity doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example Werner Ceusters 'portions of reality' include 4 sorts, entities (as BFO construes them), universals, configurations, and relations. It is an open question as to whether entities as construed in BFO will at some point also include these other portions of reality. See, for example, 'How to track absolutely everything' at http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf",,An entity is anything that exists or has existed or will exist. (axiom label in BFO2 Reference: [001-001]),your body mass index|Verdi’s Requiem|Julius Caesar|the Second World War,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000001,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/bfo.owl,entity,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000185,photograph,,"A photograph is created by projecting an image onto a photosensitive surface such as a chemically treated plate or film, CCD receptor, etc.",FALSE,,,http://purl.obolibrary.org/obo/IAO_0000101,,,,,,,,,,,,,,"A photograph is created by projecting an image onto a photosensitive surface such as a chemically treated plate or film, CCD receptor, etc.",WEB: http://en.wiktionary.org/wiki/photograph,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000122,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000185,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,photograph,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON:Alan Ruttenberg|PERSON:Joanne Luciano|PERSON:Melanie Courtot,,,
http://purl.obolibrary.org/obo/IAO_0020017,family name,surname|last name,"An identifier that is typically a part of a person's name which has been passed, according to law or custom, from one or both parents to their children.",FALSE,,,http://purl.obolibrary.org/obo/IAO_0020000,,,,surname|last name,,,,,,,,,,"An identifier that is typically a part of a person's name which has been passed, according to law or custom, from one or both parents to their children.",http://en.wikipedia.org/wiki/Family_name,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0020017,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,family name,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Justin Whorton|Mathias Brochhausen,,https://github.com/information-artifact-ontology/IAO/issues/237,
http://purl.obolibrary.org/obo/IAO_0000616,conflict of interest section,duality of interest|statement of interest|declaration of interest|competing interests|authors' disclosures of potential conflicts of interest|conflict of interest statement|competing financial interests|declaration of competing interest|disclosure of conflict of interest|declaration of competing interests|declaration of interests|conflict of interests|conflict of interest|conflicts of interest|disclosure of potential conflicts of interest,A part of a document used to declare any competing interests regarding the authors and/or funding organization for the work described in the document.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000314,,,,duality of interest|statement of interest|declaration of interest|competing interests|authors' disclosures of potential conflicts of interest|conflict of interest statement|competing financial interests|declaration of competing interest|disclosure of conflict of interest|declaration of competing interests|declaration of interests|conflict of interests|conflict of interest|conflicts of interest|disclosure of potential conflicts of interest,,,,,,,,,,A part of a document used to declare any competing interests regarding the authors and/or funding organization for the work described in the document.,,,,,,,,,,,conflict of interest section,,The section labelled 'conflict of interest statement' in a typical scientific journal article.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000617,,,,,,,,,,,,,IAO:0000616,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,conflict of interest section,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Bill Baumgartner,,https://github.com/information-artifact-ontology/IAO/issues/234|https://github.com/information-artifact-ontology/IAO/issues/183,
http://purl.obolibrary.org/obo/BFO_0000028,three-dimensional spatial region,,,FALSE,,,http://purl.obolibrary.org/obo/BFO_0000006,,,,,,,ThreeDimensionalSpatialRegion,3d-s-region,,,,,,,,,,,,,,,,,,A three-dimensional spatial region is a spatial region that is of three dimensions. (axiom label in BFO2 Reference: [040-001]),"a sphere-shaped region of space,|a cube-shaped region of space",,,,,,(forall (x) (if (ThreeDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [040-001] ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000028,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/bfo.owl,three-dimensional spatial region,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000088,report,,"A document assembled by an author for the purpose of providing information for the audience. A report is the output of a documenting process and has the objective to be consumed by a specific audience. Topic of the report is on something that has completed. A report is not a single figure. Examples of reports are journal article, patent application, grant progress report, case report (not patient record).",FALSE,,,http://purl.obolibrary.org/obo/IAO_0000310,,,,,,,,,,,,,,"A document assembled by an author for the purpose of providing information for the audience. A report is the output of a documenting process and has the objective to be consumed by a specific audience. Topic of the report is on something that has completed. A report is not a single figure. Examples of reports are journal article, patent application, grant progress report, case report (not patient record).",OBI_0000099|GROUP: OBI,,,,,,,,,"2009-03-16: work has been done on this term during during the OBI workshop winter 2009 and the current definition was considered acceptable for use in OBI. If there is a need to modify this definition please notify OBI.|2009-03-16: this was report of results with definition: A report is a narrative object that is a formal statement of the results of an investigation, or of any matter on which definite information is required, made by some person or body instructed or required to do so.|2009-08-10 Alan Ruttenberg: Larry Hunter suggests that this be obsoleted and replaced by 'document'. Alan restored as there are OBI dependencies and this merits further discussion|2009-03-16: comment from Darren Natale: I am slightly uneasy with the sentence ""Topic of the report is on 
something that has completed.""  Should it be restricted to those things 
that are completed?  For example, a progress report is (usually) about 
something that definitely has *not* been completed, or may include 
(only) projections.  I think the definition would not suffer if the 
whole sentence is deleted.|disagreement about where reports go. alan: only some gene lists are reports. Is a report all the content of some document? The example of usage suggests that a report may be part of  some article. Term needs clarification",report,,Examples of reports are gene lists and investigation reports. These are not published (journal) articles but may be included in a journal article.,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000125,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000088,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,report,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Melanie Courtot|PERSON: Chris Stoeckert|PERSON: Alan Ruttenberg,,,
http://purl.obolibrary.org/obo/IAO_0000009,datum label,,A label is a symbol that is part of some other datum and is used to either partially define  the denotation of that datum or to provide a means for identifying the datum as a member of the set of data with the same label,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000030,,,,,,,,,,,,"9/22/11 BP: changed the rdfs:label for this class from 'label' to 'datum label' to convey that this class is not intended to cover all kinds of labels (stickers, radiolabels, etc.), and not even all kind of textual labels, but rather the kind of labels occuring in a datum. 
",,A label is a symbol that is part of some other datum and is used to either partially define  the denotation of that datum or to provide a means for identifying the datum as a member of the set of data with the same label,,,,,,,,,,http://www.golovchenko.org/cgi-bin/wnsearch?q=label#4n,datum label,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000123,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000009,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,datum label,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,GROUP: IAO,,,
http://purl.obolibrary.org/obo/IAO_0000648,zone improvement plan code,ZIP code,"A postal code that is used in the United States for the purpose of sorting and delivering mail, and that denotes some postal delivery route or some aggregate of postal delivery routes.",FALSE,,,http://purl.obolibrary.org/obo/IAO_0000646,,,,ZIP code,,,,,,,,,,"A postal code that is used in the United States for the purpose of sorting and delivering mail, and that denotes some postal delivery route or some aggregate of postal delivery routes.",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000648,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,zone improvement plan code,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Mathias Brochhausen,,,
http://purl.obolibrary.org/obo/IAO_0000607,author information section,biographies|author information|contributor information|authors’ information,A part of a document about the authors that provides biographical information and may discuss how the authors' professional experiences are relevant to the work described in the document.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000314,,,,biographies|author information|contributor information|authors’ information,,,,,,,,,,A part of a document about the authors that provides biographical information and may discuss how the authors' professional experiences are relevant to the work described in the document.,,,,,,,,,,,author information section,,"The section labelled 'author information' in a typical scientific journal article, e.g. in Takon. Ann Gen Psychiatry. 2011; 10: 25. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3204268/)",,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000608,,,,,,,,,,,,,IAO:0000607,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,author information section,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Bill Baumgartner,,https://github.com/information-artifact-ontology/IAO/issues/234|https://github.com/information-artifact-ontology/IAO/issues/183,
http://purl.obolibrary.org/obo/IAO_0000623,funding source declaration section,funding/support|grants|financial support|funding sources|source of funding|study funding|funding information|sources of funding|funding statement|funding|role of the funding source,A part of a document used to detail information regarding the source of funding used in support of the generation of the document content.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000314,,,,funding/support|grants|financial support|funding sources|source of funding|study funding|funding information|sources of funding|funding statement|funding|role of the funding source,,,,,,,,,,A part of a document used to detail information regarding the source of funding used in support of the generation of the document content.,,,,,,,,,,,funding source declaration section,,The section labelled 'funding' in a typical scientific journal article.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000624,,,,,,,,,,,,,IAO:0000623,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,funding source declaration section,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Bill Baumgartner,,https://github.com/information-artifact-ontology/IAO/issues/234|https://github.com/information-artifact-ontology/IAO/issues/183,
http://purl.obolibrary.org/obo/IAO_0000311,publication,published document,A document that is the output of a publishing process.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000310,,,,published document,,,,,,,,,,A document that is the output of a publishing process.,,,,,,,,,,,publication,,"journal article, newspaper story, book, etc.",,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000120,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000311,,,,,,,,,,,,,,,,,,,,,,,,,,,,Revisit the term in Octorber 2020. Improve the defintion.,,publication,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Chris Stoeckert|PERSON: Jie Zheng|PERSON: Lawrence Hunter,,https://github.com/information-artifact-ontology/IAO/issues/232,
http://purl.obolibrary.org/obo/IAO_0000416,time measurement datum,,A scalar measurement datum that is the result of measuring a temporal interval,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000032,,,,,,,,,,,,,,A scalar measurement datum that is the result of measuring a temporal interval,,,,,,,,,,2009/09/28 Alan Ruttenberg. Fucoidan-use-case,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000123,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000416,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,time measurement datum,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Person:Alan Ruttenberg,,,
http://purl.obolibrary.org/obo/IAO_0000638,pre-publication history textual entity,,"A textual entity that expresses the pre-publication history (submission dates, reviewer comments, etc) for a document, often including a hyperlink to a web page detailing the information.",FALSE,,,http://purl.obolibrary.org/obo/IAO_0000300,,,,,,,,,,,,,,"A textual entity that expresses the pre-publication history (submission dates, reviewer comments, etc) for a document, often including a hyperlink to a web page detailing the information.",,,,,,,,,,,pre-publication history textual entity,,"From Xiao et al. BMC Anesthesiol. 2013; 13: 33. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4016475/):

The pre-publication history for this paper can be accessed here:
http://www.biomedcentral.com/1471-2253/13/33/prepub",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000638,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,pre-publication history textual entity,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Bill Baumgartner,,https://github.com/information-artifact-ontology/IAO/issues/183,
http://purl.obolibrary.org/obo/IAO_0000584,time sampled measurement data set,experimental time series,A data set that is an aggregate of data recording some measurement at a number of time points. The time series data set is an ordered list of pairs of time measurement data and the corresponding measurement data acquired at that time.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000100,,,,experimental time series,,,,,,,,,,A data set that is an aggregate of data recording some measurement at a number of time points. The time series data set is an ordered list of pairs of time measurement data and the corresponding measurement data acquired at that time.,,,,,,,,,,,,,pmid:20604925 - time-lapse live cell microscopy,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000120,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000582,,,,,,,,,,,,,IAO:0000584,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,time sampled measurement data set,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Alan Ruttenberg,,,
http://purl.obolibrary.org/obo/IAO_0000637,pre-publication history section,pre-publication history|notice of republication,A part of the document about the publication history of a document. This section typically details dates of document submission to a journal and dates of any re-submissions as well as reviewer comments and responses to reviewers by the authors.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000314,,,,pre-publication history|notice of republication,,,,,,,,,,A part of the document about the publication history of a document. This section typically details dates of document submission to a journal and dates of any re-submissions as well as reviewer comments and responses to reviewers by the authors.,,,,,,,,,,,pre-publication history section,,"The section labelled 'pre-publication history' in a typical scientific journal article, e.g. in Xiao et al. BMC Anesthesiol. 2013; 13: 33. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4016475/)",,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000638,,,,,,,,,,,,,IAO:0000637,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,pre-publication history section,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Bill Baumgartner,,https://github.com/information-artifact-ontology/IAO/issues/183,
http://purl.obolibrary.org/obo/IAO_0000057,contour plot,,,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000038,,,,,,,,,,,,,,,OBI_0000246|group:Flow Cytometry community,,,,,,,,,generically_dependent_continuants,contour plot,,"Contour plot of SSC-H, FSC-H, and FL1-H.",,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000057,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,contour plot,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,person:Allyson Lister|person:Chris Stoeckert,,,
http://purl.obolibrary.org/obo/BFO_0000006,spatial region,,,FALSE,,,http://purl.obolibrary.org/obo/BFO_0000141,,,,,,,SpatialRegion,s-region,,,,,,,,,,,,,,,,"Spatial region doesn't have a closure axiom because the subclasses don't exhaust all possibilites. An example would be the union of a spatial point and a spatial line that doesn't overlap the point, or two spatial lines that intersect at a single point. In both cases the resultant spatial region is neither 0-dimensional, 1-dimensional, 2-dimensional, or 3-dimensional.|BFO 2 Reference: Spatial regions do not participate in processes.",,A spatial region is a continuant entity that is a continuant_part_of spaceR as defined relative to some frame R. (axiom label in BFO2 Reference: [035-001]),,,,,,,(forall (x y t) (if (and (SpatialRegion x) (continuantPartOfAt y x t)) (SpatialRegion y))) // axiom label in BFO2 CLIF: [036-001] |(forall (x) (if (SpatialRegion x) (Continuant x))) // axiom label in BFO2 CLIF: [035-001] ,All continuant parts of spatial regions are spatial regions. (axiom label in BFO2 Reference: [036-001]),,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000006,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/bfo.owl,spatial region,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000032,scalar measurement datum,,"A scalar measurement datum is a measurement datum that is composed of two parts, numerals and a unit label.",FALSE,,,http://purl.obolibrary.org/obo/IAO_0000109,,,,,,,,,,,,,,"A scalar measurement datum is a measurement datum that is composed of two parts, numerals and a unit label.",,,,,,,,,,"2009-03-16: we decided to keep datum singular in scalar measurement datum, as in
this case we explicitly refer to the singular form|Would write this as: has_part some 'measurement unit label' and has_part some numeral and has_part exactly 2, except for the fact that this won't let us take advantage of OWL reasoning over the numbers. Instead use has measurment value property to represent the same. Use has measurement unit label (subproperty of has_part) so we can easily say that there is only one of them.",,,10 feet. 3 ml.,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000120,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000032,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,scalar measurement datum,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Melanie Courtot|PERSON: Alan Ruttenberg,,,
http://purl.obolibrary.org/obo/IAO_0000593,software library,,A software library is software composed of a collection of software modules and/or software methods in a form that can be statically or dynamically linked to some software application.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000010,,,,,,,,,,,,,,A software library is software composed of a collection of software modules and/or software methods in a form that can be statically or dynamically linked to some software application.,https://github.com/information-artifact-ontology/IAO/issues/80,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000123,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000593,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,software library,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Melanie Courtot|PERSON: Michel Dumontier,,,
http://purl.obolibrary.org/obo/IAO_0000302,author identification,,A textual entity intended to identify a particular author,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000590,,,,,,,,,,,,,,A textual entity intended to identify a particular author,,,,,,,,,,,author identification,,L. Hunter,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000125,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000302,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,author identification,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Lawrence Hunter,,,
http://purl.obolibrary.org/obo/IAO_0000647,Postal delivery route,,"A plan specification that if realized, is realized by the delivery of mail to some facility or mailbox within some geographical region.",FALSE,,,http://purl.obolibrary.org/obo/IAO_0000104,,,,,,,,,,,,,,"A plan specification that if realized, is realized by the delivery of mail to some facility or mailbox within some geographical region.",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000647,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Postal delivery route,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Mathias Brochhausen,,,
http://purl.obolibrary.org/obo/BFO_0000140,continuant fiat boundary,,"b is a continuant fiat boundary = Def. b is an immaterial entity that is of zero, one or two dimensions and does not include a spatial region as part. (axiom label in BFO2 Reference: [029-001])",FALSE,,,http://purl.obolibrary.org/obo/BFO_0000141,,,,,,,ContinuantFiatBoundary,cf-boundary,,,,,,"b is a continuant fiat boundary = Def. b is an immaterial entity that is of zero, one or two dimensions and does not include a spatial region as part. (axiom label in BFO2 Reference: [029-001])",,,,,,,,,,"BFO 2 Reference: In BFO 1.1 the assumption was made that the external surface of a material entity such as a cell could be treated as if it were a boundary in the mathematical sense. The new document propounds the view that when we talk about external surfaces of material objects in this way then we are talking about something fiat. To be dealt with in a future version: fiat boundaries at different levels of granularity.More generally, the focus in discussion of boundaries in BFO 2.0 is now on fiat boundaries, which means: boundaries for which there is no assumption that they coincide with physical discontinuities. The ontology of boundaries becomes more closely allied with the ontology of regions.|BFO 2 Reference: a continuant fiat boundary is a boundary of some material entity (for example: the plane separating the Northern and Southern hemispheres; the North Pole), or it is a boundary of some immaterial entity (for example of some portion of airspace). Three basic kinds of continuant fiat boundary can be distinguished (together with various combination kinds [29|Continuant fiat boundary doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the mereological sum of two-dimensional continuant fiat boundary and a one dimensional continuant fiat boundary that doesn't overlap it. The situation is analogous to temporal and spatial regions.",,,,,,,,,(iff (ContinuantFiatBoundary a) (and (ImmaterialEntity a) (exists (b) (and (or (ZeroDimensionalSpatialRegion b) (OneDimensionalSpatialRegion b) (TwoDimensionalSpatialRegion b)) (forall (t) (locatedInAt a b t)))) (not (exists (c t) (and (SpatialRegion c) (continuantPartOfAt c a t)))))) // axiom label in BFO2 CLIF: [029-001] ,Every continuant fiat boundary is located at some spatial region at every time at which it exists,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000140,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/bfo.owl,continuant fiat boundary,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/BFO_0000147,zero-dimensional continuant fiat boundary,,,FALSE,,,http://purl.obolibrary.org/obo/BFO_0000140,,,,,,,ZeroDimensionalContinuantFiatBoundary,0d-cf-boundary,,,,,,,,,,,,,,,,"zero dimension continuant fiat boundaries are not spatial points. Considering the example 'the quadripoint where the boundaries of Colorado, Utah, New Mexico, and Arizona meet' : There are many frames in which that point is zooming through many points in space. Whereas, no matter what the frame, the quadripoint is always in the same relation to the boundaries of Colorado, Utah, New Mexico, and Arizona.",,a zero-dimensional continuant fiat boundary is a fiat point whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [031-001]),"the quadripoint where the boundaries of Colorado, Utah, New Mexico, and Arizona meet|the geographic North Pole|the point of origin of some spatial coordinate system.",,,,,,(iff (ZeroDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (ZeroDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [031-001] ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000147,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/bfo.owl,zero-dimensional continuant fiat boundary,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000028,symbol,,An information content entity that is a mark(s) or character(s) used as a conventional representation of another entity.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000030,,,,,,,,,,,,,,An information content entity that is a mark(s) or character(s) used as a conventional representation of another entity.,based on Oxford English Dictionary,,,,,,,,,"2014-03-31: We would like to have a deeper analysis of 'mark' and 'sign' in the future (see https://github.com/information-artifact-ontology/IAO/issues/154).|20091104, MC: this needs work and will most probably change",symbol,,"a serial number such as ""12324X""|a stop sign|a written proper name such as ""OBI""",,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000125,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000028,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,symbol,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Jonathan Rees|PERSON: James A. Overton,,,
http://purl.obolibrary.org/obo/BFO_0000023,role,,"A realizable entity  the manifestation of which brings about some result or end that is not essential to a continuant  in virtue of the kind of thing that it is but that can be served or participated in by that kind of continuant  in some kinds of natural, social or institutional contexts.",FALSE,,,http://purl.obolibrary.org/obo/BFO_0000017,,,,,,,Role,role,,,,,,"A realizable entity  the manifestation of which brings about some result or end that is not essential to a continuant  in virtue of the kind of thing that it is but that can be served or participated in by that kind of continuant  in some kinds of natural, social or institutional contexts.",,,,,,,,,,"BFO 2 Reference: One major family of examples of non-rigid universals involves roles, and ontologies developed for corresponding administrative purposes may consist entirely of representatives of entities of this sort. Thus ‘professor’, defined as follows,b instance_of professor at t =Def. there is some c, c instance_of professor role & c inheres_in b at t.denotes a non-rigid universal and so also do ‘nurse’, ‘student’, ‘colonel’, ‘taxpayer’, and so forth. (These terms are all, in the jargon of philosophy, phase sortals.) By using role terms in definitions, we can create a BFO conformant treatment of such entities drawing on the fact that, while an instance of professor may be simultaneously an instance of trade union member, no instance of the type professor role is also (at any time) an instance of the type trade union member role (any more than any instance of the type color is at any time an instance of the type length).If an ontology of employment positions should be defined in terms of roles following the above pattern, this enables the ontology to do justice to the fact that individuals instantiate the corresponding universals –  professor, sergeant, nurse – only during certain phases in their lives.",,"b is a role means: b is a realizable entity & b exists because there is some single bearer that is in some special physical, social, or institutional set of circumstances in which this bearer does not have to be& b is not such that, if it ceases to exist, then the physical make-up of the bearer is thereby changed. (axiom label in BFO2 Reference: [061-001])","the role of a stone in marking a property boundary|the priest role|the student role|the role of subject in a clinical trial|the role of a boundary to demarcate two neighboring administrative territories|John’s role of husband to Mary is dependent on Mary’s role of wife to John, and both are dependent on the object aggregate comprising John and Mary as member parts joined together through the relational quality of being married.|the role of a building in serving as a military target",,,,,,(forall (x) (if (Role x) (RealizableEntity x))) // axiom label in BFO2 CLIF: [061-001] ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000023,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/bfo.owl,role,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0020020,code set,code system|controlled vocabulary|codeset|coding system|code map,"An information content entity that is a collection of other information content entities that has been created to identify or annotate things in a specified domain, and where the intention of its creators is that the collection has a one-to-one correspondence with those things.",FALSE,,,http://purl.obolibrary.org/obo/IAO_0000030,,,,code system|controlled vocabulary|codeset|coding system|code map,,,,,,,,,,"An information content entity that is a collection of other information content entities that has been created to identify or annotate things in a specified domain, and where the intention of its creators is that the collection has a one-to-one correspondence with those things.",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0020000,,,,,,,,,,,,,IAO:0020020,,,Alan Ruttenberg|Clint Dowland|Matt Diller|William R. Hogan|Sarah Bost,,,,,,,,,,,,,,,,,,,,,,,,,"Many code sets are created for a specific purpose in addition to merely identifying or annotating core ideas of a specified domain.|Does not imply absence vs. presence of any taxonomy.|Code sets might include non-entities/things (e.g. missing thumbs).|The information content entities do not denote each other.|For each given domain, there can potentially exist multiple code sets. The multiplicity of code sets is partially due to the different specific purposes of those code sets.|Each aggregated entity is often (but not necessarily) associated with a text string—variously called a “description,” “name,” “title,” or “label”—that helps humans reach the target of denotation.

When there is no such string, it is almost always because the entities take the form of human language words. For example, a “sex” or “gender” code set could contain “MALE” and “FEMALE,” or even “M” and “F” (by convention, we understand what these mean).|Does not imply that aggregated entities denote particulars, universals, or defined classes (a.k.a. attributive collections) or even that they denote only one of these three types of entities.|For National Drug Codes (NDCs) and similar code sets, there doesn’t even have to be a single, fully-concretized copy somewhere (for example, for NDCs there is no centralized database or repository where they all live as one instance of concretization of code set). The code set can be “distributively” concretized. This seems like an unusual exception, but it also likely applies to Universal Product Codes (UPCs) and their follow on Global Trade Item Numbers (GTINs).",,code set,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Justin Whorton|Alan Ruttenberg|Mathias Brochhausen,,https://github.com/information-artifact-ontology/IAO/issues/237,
http://purl.obolibrary.org/obo/IAO_0000575,associating information with a centrally registered identifier in its registry,associating information with a CRID in the CRID registry,A planned process in which a CRID registry associates an information content entity with a CRID symbol,FALSE,,,http://purl.obolibrary.org/obo/COB_0000035,,,,associating information with a CRID in the CRID registry,,,,,,,,,,A planned process in which a CRID registry associates an information content entity with a CRID symbol,,,,,,,,,,,,,Articles in Pubmed are reviewed by curators who add MESH terms to the Pubmed records in order to categorize them better and improve the ability to search for them. ,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000120,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000579,,,,http://purl.obolibrary.org/obo/IAO_0000577|http://purl.obolibrary.org/obo/IAO_0000030,,,,,,,,IAO:0000575,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,associating information with a centrally registered identifier in its registry,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON:Alan Ruttenberg,,,
http://purl.obolibrary.org/obo/IAO_0000580,looking up a centrally registered identifier,looking up a CRID,A planned process in which a request to a CRID registry is made to return the information associated with a CRID symbol,FALSE,,,http://purl.obolibrary.org/obo/COB_0000035,,,,looking up a CRID,,,,,,,,,,A planned process in which a request to a CRID registry is made to return the information associated with a CRID symbol,,,,,,,,,,,,,Going to the PubMed website and entering a PubMed ID in order to retrieve the Pubmed information associated with that ID. ,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000120,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000579,,,,http://purl.obolibrary.org/obo/IAO_0000577,http://purl.obolibrary.org/obo/IAO_0000030,,,,,,,IAO:0000580,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,looking up a centrally registered identifier,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Bjoern Peters|PERSON: Melanie Courtot|PERSON: Bill Hogan|PERSON: Alan Ruttenberg,,,
http://purl.obolibrary.org/obo/IAO_0000414,mass measurement datum,,A scalar measurement datum that is the result of measurement of mass quality,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000032,,,,,,,,,,,,,,A scalar measurement datum that is the result of measurement of mass quality,,,,,,,,,,2009/09/28 Alan Ruttenberg. Fucoidan-use-case,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000123,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000414,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,mass measurement datum,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Person:Alan Ruttenberg,,,
http://purl.obolibrary.org/obo/IAO_8000014,generated ontology module,,"An ontology module that is automatically generated, for example via a SPARQL query or via template and a CSV.",FALSE,,,http://purl.obolibrary.org/obo/IAO_8000000,,,,,,,,,,,,,,"An ontology module that is automatically generated, for example via a SPARQL query or via template and a CSV.",,,,,,,,,,TODO: Add axioms (using PROV-O?) that indicate this is the output-of some reasoning process,generated ontology module,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:8000014,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,generated ontology module,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000640,related work textual entity,,A textual entity that discusses work from other publications and expresses their relevancy to the content of a document.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000300,,,,,,,,,,,,,,A textual entity that discusses work from other publications and expresses their relevancy to the content of a document.,,,,,,,,,,,related work textual entity,,"Excerpt from Žitnik and Zupan. Bioinformatics. 2015 Jun 15; 31(12): i230–i239. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4542780/):

Our work presented here is similar in spirit to our recently developed methodology for data fusion via collective matrix factorization (Žitnik and Zupan, 2015).

",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000640,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,related work textual entity,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Bill Baumgartner,,https://github.com/information-artifact-ontology/IAO/issues/183,
http://purl.obolibrary.org/obo/IAO_0000402,two dimensional cartesian spatial coordinate datum,,A cartesion spatial coordinate datum that  uses two values to specify a position within a two dimensional spatial region,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000400,,,,,,,,,,,,,,A cartesion spatial coordinate datum that  uses two values to specify a position within a two dimensional spatial region,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000123,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000402,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,two dimensional cartesian spatial coordinate datum,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Alan Ruttenberg,,,
http://purl.obolibrary.org/obo/BFO_0000009,two-dimensional spatial region,,,FALSE,,,http://purl.obolibrary.org/obo/BFO_0000006,,,,,,,TwoDimensionalSpatialRegion,2d-s-region,,,,,,,,,,,,,,,,,,A two-dimensional spatial region is a spatial region that is of two dimensions. (axiom label in BFO2 Reference: [039-001]),an infinitely thin plane in space.|the surface of a sphere-shaped part of space,,,,,,(forall (x) (if (TwoDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [039-001] ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000009,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/bfo.owl,two-dimensional spatial region,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000633,materials section,materials,A part of a document about the materials required to reproduce the content of the document.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000314,,,,materials,,,,,,,,,,A part of a document about the materials required to reproduce the content of the document.,,,,,,,,,,,materials section,,"The section labelled 'materials' in a typical scientific journal article, e.g. Nguyen et al. BMC Bioinformatics. 2010; 11: 279. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2889936/)",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000633,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,materials section,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Bill Baumgartner,,https://github.com/information-artifact-ontology/IAO/issues/183,
http://purl.obolibrary.org/obo/IAO_0000614,case report textual entity,,A textual entity that expresses a detailed account of a portion of the medical history for a specific patient.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000300,,,,,,,,,,,,,,A textual entity that expresses a detailed account of a portion of the medical history for a specific patient.,,,,,,,,,,,case report textual entity,,"Excerpt from Taglia et al. Acta Myol. 2012 Dec; 31(3): 201–203. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3631801/):

The patient is a 50-year-old man. His medical history was not contributory. At the age of 37 years, he complained of persistent fatigue and dyspnoea even for modest efforts and oedema of lower limbs. The patient was examined at the department of internal medicine of the local hospital, and hospitalised with a diagnosis of dilated cardiomyopathy probably consequence of a myocarditis process. Soon after he was transferred to the cardiologic department of the regional hospital, and pharmacologically treated for heart failure and pulmonary hypertension.",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000614,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,case report textual entity,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Bill Baumgartner,,https://github.com/information-artifact-ontology/IAO/issues/183,
http://purl.obolibrary.org/obo/IAO_0000182,obsolete_survival curve,,A survival curve is a report graph which is a graphical representation of data where the percentage of survival is plotted as a function of time.,TRUE,,,http://www.geneontology.org/formats/oboInOwl#ObsoleteClass,,,,,,,,,,,,,,A survival curve is a report graph which is a graphical representation of data where the percentage of survival is plotted as a function of time.,WEB: http://www.graphpad.com/www/book/survive.htm,,,,,,,,,,obsolete_survival curve,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000122,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000103,,,,,,,,,,,,,,,,IAO:0000182,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,obsolete_survival curve,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON:James Malone|PERSON:Chris Stoeckert|PERSON:Melanie Courtot,,,
http://purl.obolibrary.org/obo/IAO_0000029,numeral,,A symbol that denotes a number.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000028,,,,,,,,,,,,,,A symbol that denotes a number.,,,,,,,,,,,numeral,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000123,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000029,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,numeral,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Jonathan Rees,,,
http://purl.obolibrary.org/obo/IAO_0000027,data entity,data item|data,"An information content entity that is intended to be one or more truthful statement(s) about something (modulo, e.g., measurement precision or other systematic errors) and is constructed/acquired by a method which reliably tends to produce (approximately) truthful statements.",FALSE,,,http://purl.obolibrary.org/obo/IAO_0000030,,,,data item|data,,,,,,,,,,"An information content entity that is intended to be one or more truthful statement(s) about something (modulo, e.g., measurement precision or other systematic errors) and is constructed/acquired by a method which reliably tends to produce (approximately) truthful statements.",,,,,,,,,,"2014-03-31: See discussion at http://odontomachus.wordpress.com/2014/03/30/aboutness-objects-propositions/|JAR: datum     -- well, this will be very tricky to define, but maybe some 
information-like stuff that might be put into a computer and that is 
meant, by someone, to denote and/or to be interpreted by some 
process... I would include lists, tables, sentences... I think I might 
defer to Barry, or to Brian Cantwell Smith

JAR: A data item is an approximately justified approximately true approximate belief|2009-03-16: data item deliberatly ambiguous: we merged data set and datum to be one entity, not knowing how to define singular versus plural. So data item is more general than datum.|2/2/2009 Alan and Bjoern discussing FACS run output data. This is a data item because it is about the cell population. Each element records an event and is typically further composed a set of measurment data items that record the fluorescent intensity stimulated by one of the lasers.|2009-03-16: removed datum as alternative term as datum specifically refers to singular form, and is thus not an exact synonym.",data entity,,"Data items include counts of things, analyte concentrations, and statistical summaries.",,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000125,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000027,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,data entity,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Jonathan Rees|PERSON: Chris Stoeckert|PERSON: Alan Ruttenberg,,,
http://purl.obolibrary.org/obo/PATO_0001241,physical object quality,,A quality which inheres in a continuant.,FALSE,,,http://purl.obolibrary.org/obo/BFO_0000019,,,,,,,,,,,,,,A quality which inheres in a continuant.,,,,,,,,,,,physical object quality,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PATO:0001241,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,physical object quality,,,,,http://purl.obolibrary.org/obo/pato.owl,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/PATO_0001018,physical quality,,A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities.,FALSE,,,http://purl.obolibrary.org/obo/PATO_0001241,,,,,,,,,,,,,,A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities.,,,,,,,,,,,physical quality,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PATO:0001018,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,physical quality,,,,,http://purl.obolibrary.org/obo/pato.owl,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/BFO_0000008,temporal region,,,FALSE,,,http://purl.obolibrary.org/obo/BFO_0000003,,,,,,,TemporalRegion,t-region,,,,,,,,,,,,,,,,Temporal region doesn't have a closure axiom because the subclasses don't exhaust all possibilites. An example would be the mereological sum of a temporal instant and a temporal interval that doesn't overlap the instant. In this case the resultant temporal region is neither 0-dimensional nor 1-dimensional,,A temporal region is an occurrent entity that is part of time as defined relative to some reference frame. (axiom label in BFO2 Reference: [100-001]),,,,,,,(forall (r) (if (TemporalRegion r) (occupiesTemporalRegion r r))) // axiom label in BFO2 CLIF: [119-002] |(forall (x y) (if (and (TemporalRegion x) (occurrentPartOf y x)) (TemporalRegion y))) // axiom label in BFO2 CLIF: [101-001] |(forall (x) (if (TemporalRegion x) (Occurrent x))) // axiom label in BFO2 CLIF: [100-001] ,Every temporal region t is such that t occupies_temporal_region t. (axiom label in BFO2 Reference: [119-002])|All parts of temporal regions are temporal regions. (axiom label in BFO2 Reference: [101-001]),,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000008,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/bfo.owl,temporal region,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000641,requirements section,requirements,"A part of a document about a resource described in the document, e.g. software, that describes the requirements necessary to use the resource, e.g. operating systems, hardware, etc. in the case of a software resource.",FALSE,,,http://purl.obolibrary.org/obo/IAO_0000314,,,,requirements,,,,,,,,,,"A part of a document about a resource described in the document, e.g. software, that describes the requirements necessary to use the resource, e.g. operating systems, hardware, etc. in the case of a software resource.",,,,,,,,,,,requirements section,,"The section labelled 'availability and requirements' in a typical scientific journal article, e.g. Qi et al. BMC Bioinformatics. 2014; 15: 11. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3897912/).",,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000642,,,,,,,,,,,,,IAO:0000641,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,requirements section,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Bill Baumgartner,,https://github.com/information-artifact-ontology/IAO/issues/183,
http://purl.obolibrary.org/obo/IAO_0000619,consent textual entity,,A textual entity that documents the consenting process used to enroll patients in a study.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000300,,,,,,,,,,,,,,A textual entity that documents the consenting process used to enroll patients in a study.,,,,,,,,,,,consent textual entity,,"From Shiba et al. Acta Neuropathol Commun. 2013; 1: 45. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3893467/):

Written informed consent was obtained from the patient’s parents for publication of this Case report and any accompanying images. A copy of the written consent is available for review by the Editor-in chief of this journal.",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000619,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,consent textual entity,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Bill Baumgartner,,https://github.com/information-artifact-ontology/IAO/issues/183,
http://purl.obolibrary.org/obo/IAO_0000636,patients textual entity,,A textual entity expressing information regarding the patients used in a study.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000300,,,,,,,,,,,,,,A textual entity expressing information regarding the patients used in a study.,,,,,,,,,,,patients textual entity,,"Excerpt from Citak et al. Acta Orthop. 2013 Jun; 84(3): 326–327. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3715825/):

Between January 1996 and February 2012, we treated 4 patients with interprosthetic femoral fractures (3 of them women) (Figure 2) using a custom-made interposition device (Waldemar Link GmbH, Hamburg, Germany) (Figure 1). Mean age was 74 (59–86) years. The fractures occurred mean 18 (13–28) years after primary THA and mean 14 (10–17) years after primary TKA. At the latest follow-up, after mean 8 (0.5–16) years, revision surgery with a total femur replacement was required in 1 case due to aseptic loosening. No other complications requiring revision surgery occurred.",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000636,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,patients textual entity,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Bill Baumgartner,,https://github.com/information-artifact-ontology/IAO/issues/183,
http://purl.obolibrary.org/obo/IAO_0000572,documenting,,A planned process in which a document is created or added to by including the specified input in it.,FALSE,,,http://purl.obolibrary.org/obo/COB_0000035,,,,,,,,,,,,,,A planned process in which a document is created or added to by including the specified input in it.,wikipedia http://en.wikipedia.org/wiki/Documenting,,,,,,,,,"6/11/9: Edited at OBI workshop. We need to be able identify a child form of information artifact which corresponds to something enduring (not brain like). This used to be restricted to physical document or digital entity as the output, but that excludes e.g. an audio cassette tape",,,Recording the current temperature in a laboratory notebook. Writing a journal article. Updating a patient record in a database.,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000125,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000030,http://purl.obolibrary.org/obo/IAO_0000310,,,,,,,IAO:0000572,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,documenting,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Bjoern Peters,,,
http://purl.obolibrary.org/obo/IAO_0000093,obsolete2_binary executable,,"Binary executable is a digital entity consisting of the binary representation of machine instructions of a specific processor or they may be binary pseudocode for a virtual machine. A non-source executable file is also called an object program. It is assumed that the binary executable file contains properly-formatted computer instructions.  (derived from Wikipedia, Nov 1, 2007)",TRUE,,,http://www.geneontology.org/formats/oboInOwl#ObsoleteClass,,,,,,,,,,,,,,"Binary executable is a digital entity consisting of the binary representation of machine instructions of a specific processor or they may be binary pseudocode for a virtual machine. A non-source executable file is also called an object program. It is assumed that the binary executable file contains properly-formatted computer instructions.  (derived from Wikipedia, Nov 1, 2007)",OBI_0000222|group:OBI,,,,,,,,,"3/22/2009 Alan Ruttenberg, obsoleted per http://groups.google.com/group/information-ontology/browse_thread/thread/789ad4b7708d5cf4
superclass was 'digital entity'",binary executable,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000103,,,,,,,,,,,,,,,,IAO:0000093,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,obsolete2_binary executable,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,person:Jennifer Fostel,,,
http://purl.obolibrary.org/obo/IAO_0000578,centrally registered identifier,CRID,An information content entity that consists of a CRID symbol and additional information about the CRID registry to which it belongs.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0020000,,,,CRID,,,,,,,,,,An information content entity that consists of a CRID symbol and additional information about the CRID registry to which it belongs.,"Original proposal from Bjoern, discussions at IAO calls",,,,,,,,,"2014-05-05: In defining this term we take no position on what the CRID denotes. In particular do not assume it denotes a *record* in the CRID registry (since the registry might not have 'records').|Note, IAO call 20101124: URIs are not always CRID, as not centrally registered. We acknowledge that CRID is a subset of a larger identifier class, but this subset fulfills our current needs. OBI PURLs are CRID as they are registered with OCLC. UPCs (Universal Product Codes from AC Nielsen)are not CRID as they are not centrally registered.|Alan, IAO call 20101124: potentially the CRID denotes the instance it was associated with during creation.",,,"The sentence ""The article has Pubmed ID 12345."" contains a CRID that has two parts: one part is the CRID symbol, which is '12345'; the other part denotes the CRID registry, which is Pubmed.",,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000120,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000577,,,,,,,,,,,,,IAO:0000578,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,centrally registered identifier,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Bjoern Peters|PERSON: Melanie Courtot|PERSON: Bill Hogan|PERSON: Alan Ruttenberg,,,
http://purl.obolibrary.org/obo/IAO_8000013,reasoned ontology module,,"An ontology module that contains axioms generated by a reasoner. The generated axioms are typically direct SubClassOf axioms, but other possibilities are available.",FALSE,,,http://purl.obolibrary.org/obo/IAO_8000000,,,,,,,,,,,,,,"An ontology module that contains axioms generated by a reasoner. The generated axioms are typically direct SubClassOf axioms, but other possibilities are available.",,,,,,,,,,,reasoned ontology module,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:8000013,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,reasoned ontology module,http://robot.obolibrary.org/reason,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000642,requirements textual entity,,"A textual entity that expresses the requirements necessary to use a resource, e.g. software.",FALSE,,,http://purl.obolibrary.org/obo/IAO_0000300,,,,,,,,,,,,,,"A textual entity that expresses the requirements necessary to use a resource, e.g. software.",,,,,,,,,,,requirements textual entity,,"From Qi et al. BMC Bioinformatics. 2014; 15: 11. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3897912/):

• Operating systems: Platform independent

• Programming language: Matlab, R, Python

• Other requirements: None

• License: GNU GPL v3

• Any restrictions to use by non-academics: None",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000642,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,requirements textual entity,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Bill Baumgartner,,https://github.com/information-artifact-ontology/IAO/issues/183,
http://purl.obolibrary.org/obo/BFO_0000024,fiat object part,,,FALSE,,,http://purl.obolibrary.org/obo/BFO_0000040,,,,,,,FiatObjectPart,fiat-object-part,,,,,,,,,,,,,,,,BFO 2 Reference: Most examples of fiat object parts are associated with theoretically drawn divisions,,"b is a fiat object part = Def. b is a material entity which is such that for all times t, if b exists at t then there is some object c such that b proper continuant_part of  c at t and c is demarcated from the remainder of c by a two-dimensional continuant fiat boundary. (axiom label in BFO2 Reference: [027-004])","the upper and lower lobes of the left lung|the dorsal and ventral surfaces of the body|the division of the brain into regions|or with divisions drawn by cognitive subjects for practical reasons, such as the division of a cake (before slicing) into (what will become) slices (and thus member parts of an object aggregate). However, this does not mean that fiat object parts are dependent for their existence on divisions or delineations effected by cognitive subjects. If, for example, it is correct to conceive geological layers of the Earth as fiat object parts of the Earth, then even though these layers were first delineated in recent times, still existed long before such delineation and what holds of these layers (for example that the oldest layers are also the lowest layers) did not begin to hold because of our acts of delineation.Treatment of material entity in BFOExamples viewed by some as problematic cases for the trichotomy of fiat object part, object, and object aggregate include: a mussel on (and attached to) a rock, a slime mold, a pizza, a cloud, a galaxy, a railway train with engine and multiple carriages, a clonal stand of quaking aspen, a bacterial community (biofilm), a broken femur. Note that, as Aristotle already clearly recognized, such problematic cases – which lie at or near the penumbra of instances defined by the categories in question – need not invalidate these categories. The existence of grey objects does not prove that there are not objects which are black and objects which are white; the existence of mules does not prove that there are not objects which are donkeys and objects which are horses. It does, however, show that the examples in question need to be addressed carefully in order to show how they can be fitted into the proposed scheme, for example by recognizing additional subdivisions [29|the division of the planet into hemispheres|the Western hemisphere of the Earth|the FMA:regional parts of an intact human body.",,,,,,(forall (x) (if (FiatObjectPart x) (and (MaterialEntity x) (forall (t) (if (existsAt x t) (exists (y) (and (Object y) (properContinuantPartOfAt x y t)))))))) // axiom label in BFO2 CLIF: [027-004] ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000024,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/bfo.owl,fiat object part,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/BFO_0000148,zero-dimensional temporal region,temporal instant.,,FALSE,,,http://purl.obolibrary.org/obo/BFO_0000008,,,,temporal instant.,,,ZeroDimensionalTemporalRegion,0d-t-region,,,,,,,,,,,,,,,,,,A zero-dimensional temporal region is a temporal region that is without extent. (axiom label in BFO2 Reference: [102-001]),the moment at which a finger is detached in an industrial accident|the moment at which a child is born|the moment of death.|a temporal region that is occupied by a process boundary|right now,,,,,,(forall (x) (if (ZeroDimensionalTemporalRegion x) (TemporalRegion x))) // axiom label in BFO2 CLIF: [102-001] ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000148,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/bfo.owl,zero-dimensional temporal region,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000591,software method,,"A software method (also called subroutine, subprogram, procedure, method, function, or routine) is software designed to execute a specific task.",FALSE,,,http://purl.obolibrary.org/obo/IAO_0000010,,,,,,,,,,,,,,"A software method (also called subroutine, subprogram, procedure, method, function, or routine) is software designed to execute a specific task.",https://github.com/information-artifact-ontology/IAO/issues/80,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000123,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000591,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,software method,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Melanie Courtot|PERSON: Michel Dumontier,,,
http://purl.obolibrary.org/obo/IAO_0000443,data item extraction from journal article,,"A planned process in which journal articles are read or processed and data items are extracted, typically for further analysis or indexing",FALSE,,,http://purl.obolibrary.org/obo/COB_0000035,,,,,,,,,,,,,,"A planned process in which journal articles are read or processed and data items are extracted, typically for further analysis or indexing",,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000120,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000013,http://purl.obolibrary.org/obo/IAO_0000027,,,,,,,IAO:0000443,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,data item extraction from journal article,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Person:Alan Ruttenberg,,,
http://purl.obolibrary.org/obo/IAO_0000702,additional results section,,"A results section that reports analyses other than main results of the study (e.g. subgroups analyses, adjusted analyses, sensitivity analyses, etc.)",FALSE,,,http://purl.obolibrary.org/obo/IAO_0000318,,,,,,,,,,,,,,"A results section that reports analyses other than main results of the study (e.g. subgroups analyses, adjusted analyses, sensitivity analyses, etc.)",https://www.equator-network.org/reporting-guidelines/strobe/|https://www.equator-network.org/reporting-guidelines/prisma/|https://www.equator-network.org/reporting-guidelines/consort/,,,,,,,,,,additional results section,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000120,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000702,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,additional results section,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,ONE ontology,,,,,,,,,,,,,,PERSON: Chen Yang|PERSON: Jie Zheng,,https://github.com/information-artifact-ontology/IAO/issues/235,
http://purl.obolibrary.org/obo/IAO_0000629,keyword textual entity,,A textual entity listing keywords indicating the major theme(s) of a document.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000300,,,,,,,,,,,,,,A textual entity listing keywords indicating the major theme(s) of a document.,,,,,,,,,,,keyword textual entity,,"From: Fu and Lin. Identification of gene-oriented exon orthology between human and mouse. BMC Genomics. 2012; 13(Suppl 1): S10. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3303729/):

Exon orthology; alternative splicing; exon duplication; intron-exon structure.",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000629,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,keyword textual entity,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Bill Baumgartner,,https://github.com/information-artifact-ontology/IAO/issues/183,
http://purl.obolibrary.org/obo/IAO_0000605,abbreviation textual entity,,A textual entity listing abbreviations and their expansions that are used in a document.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000300,,,,,,,,,,,,,,A textual entity listing abbreviations and their expansions that are used in a document.,,,,,,,,,,,abbreviation textual entity,,"From Shiba et al. Acta Neuropathol Commun. 2013; 1: 45. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3893467/):

BAC: Bacterial artificial chromosome; CR: Calretinin; GFAP: Glial fibrillary acidic protein; MAP: Microtubule-associated protein; MRI: Magnetic resonance imaging; NSC: Neural stem cell; PDA: Patent ductus arteriosus; PMG: Polymicrogyria; PNH: Periventricular nodular heterotopia; VSD: Ventricular septal defect.",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000605,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,abbreviation textual entity,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Bill Baumgartner,,https://github.com/information-artifact-ontology/IAO/issues/183,
http://purl.obolibrary.org/obo/BFO_0000016,disposition,,,FALSE,,,http://purl.obolibrary.org/obo/BFO_0000017,,,,,,,Disposition,disposition,,,,,,,,,,,,,,,,BFO 2 Reference: Dispositions exist along a strength continuum. Weaker forms of disposition are realized in only a fraction of triggering cases. These forms occur in a significant number of cases of a similar type.,,"b is a disposition means: b is a realizable entity & b’s bearer is some material entity & b is such that if it ceases to exist, then its bearer is physically changed, & b’s realization occurs when and because this bearer is in some special physical circumstances, & this realization occurs in virtue of the bearer’s physical make-up. (axiom label in BFO2 Reference: [062-002])",an atom of element X has the disposition to decay to an atom of element Y|children are innately disposed to categorize objects in certain ways.|certain people have a predisposition to colon cancer|the cell wall is disposed to filter chemicals in endocytosis and exocytosis,,,,,,(forall (x t) (if (and (RealizableEntity x) (existsAt x t)) (exists (y) (and (MaterialEntity y) (specificallyDepends x y t))))) // axiom label in BFO2 CLIF: [063-002] |(forall (x) (if (Disposition x) (and (RealizableEntity x) (exists (y) (and (MaterialEntity y) (bearerOfAt x y t)))))) // axiom label in BFO2 CLIF: [062-002] ,"If b is a realizable entity then for all t at which b exists, b s-depends_on some material entity at t. (axiom label in BFO2 Reference: [063-002])",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000016,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/bfo.owl,disposition,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000705,research settings section,,A document part that describes the physical/social/cultural conditions around a research trial.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000314,,,,,,,,,,,,,,A document part that describes the physical/social/cultural conditions around a research trial.,https://www.ncbi.nlm.nih.gov/books/NBK262175/,,,,,,,,,,research settings section,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000120,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000705,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,research settings section,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,ONE ontology,,,,,,,,,,,,,,PERSON: Chen Yang|PERSON: Jie Zheng,,https://github.com/information-artifact-ontology/IAO/issues/235,
http://purl.obolibrary.org/obo/IAO_0000010,software,,"Software is a plan specification composed of a series of instructions that can be 
interpreted by or directly executed by a processing unit.",FALSE,,,http://purl.obolibrary.org/obo/IAO_0000104,,,,,,,,,,,,,,"Software is a plan specification composed of a series of instructions that can be 
interpreted by or directly executed by a processing unit.",GROUP: OBI,,,,,,,,,see sourceforge tracker discussion at http://sourceforge.net/tracker/index.php?func=detail&aid=1958818&group_id=177891&atid=886178,software,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000120,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000010,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,software,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Bjoern Peters|PERSON: Melanie Courtot|PERSON: Chris Stoeckert|PERSON: Alan Ruttenberg,,,
http://purl.obolibrary.org/obo/IAO_0000634,notes section,notes,"A part of a document containing typically short notes about the document itself and/or the authors. Often the notes section contains subsections related to funding, competing interests, ethical approval, etc.",FALSE,,,http://purl.obolibrary.org/obo/IAO_0000314,,,,notes,,,,,,,,,,"A part of a document containing typically short notes about the document itself and/or the authors. Often the notes section contains subsections related to funding, competing interests, ethical approval, etc.",,,,,,,,,,,notes section,,"The section labelled 'notes' in a typical scientific journal article, e.g. McLean et al. Br J Gen Pract. 2014 Jul; 64(624): e440–e447 (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4073730/):",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000634,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,notes section,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Bill Baumgartner,,https://github.com/information-artifact-ontology/IAO/issues/183,
http://purl.obolibrary.org/obo/BFO_0000017,realizable entity,,"A specifically dependent continuant  that inheres in continuant  entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances.",FALSE,,,http://purl.obolibrary.org/obo/BFO_0000020,,,,,,,RealizableEntity,realizable,,,,,,"A specifically dependent continuant  that inheres in continuant  entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances.",,,,,,,,,,,,To say that b is a realizable entity is to say that b is a specifically dependent continuant that inheres in some independent continuant which is not a spatial region and is of a type instances of which are realized in processes of a correlated type. (axiom label in BFO2 Reference: [058-002]),the disposition of your blood to coagulate|the role of being a doctor|the role of this boundary to delineate where Utah and Colorado meet|the disposition of this piece of metal to conduct electricity.|the function of your reproductive organs,,,,,,(forall (x t) (if (RealizableEntity x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (bearerOfAt y x t))))) // axiom label in BFO2 CLIF: [060-002] |(forall (x) (if (RealizableEntity x) (and (SpecificallyDependentContinuant x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (inheresIn x y)))))) // axiom label in BFO2 CLIF: [058-002] ,All realizable dependent continuants have independent continuants that are not spatial regions as their bearers. (axiom label in BFO2 Reference: [060-002]),,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000017,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/bfo.owl,realizable entity,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000639,related work section,related work|related literature,A part of a document about work in other publications that is relevant to the content of the document.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000314,,,,related work|related literature,,,,,,,,,,A part of a document about work in other publications that is relevant to the content of the document.,,,,,,,,,,,related work section,,"The section labelled 'related work' in a typical scientific journal article, e.g. Žitnik and Zupan. Bioinformatics. 2015 Jun 15; 31(12): i230–i239. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4542780/)",,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000640,,,,,,,,,,,,,IAO:0000639,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,related work section,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Bill Baumgartner,,https://github.com/information-artifact-ontology/IAO/issues/183,
http://purl.obolibrary.org/obo/IAO_0000309,diagram,,A figure that expresses one or more propositions,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000308,,,,,,,,,,,,,,A figure that expresses one or more propositions,,,,,,,,,,,diagram,,"A molecular structure ribbon cartoon showing helices, turns and sheets and their relations to each other in space.",,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000120,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000309,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,diagram,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Lawrence Hunter,,,
http://purl.obolibrary.org/obo/IAO_0000707,graphical abstract,visual abstract,An abstract that is pictorial summary of the main findings described in the document.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000315,,,,visual abstract,,,,,,,,,,An abstract that is pictorial summary of the main findings described in the document.,https://www.elsevier.com/authors/journal-authors/graphical-abstract,,,,,,,,,,graphical abstract,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000120,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000707,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,graphical abstract,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Biomedical literature NLP project,,,,,,,,,,,,,,PERSON: Jie Zheng|PERSON: Tim Beck,,https://github.com/information-artifact-ontology/IAO/issues/234,
http://purl.obolibrary.org/obo/UO_0000002,mass unit,,A unit which is a standard measure of the amount of matter/energy of a physical object.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000003,,,,,,,,,,,,,,A unit which is a standard measure of the amount of matter/energy of a physical object.,,,,,,,,,,,mass unit,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,UO:0000002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,mass unit,,,,,http://purl.obolibrary.org/obo/uo.owl,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/UO_0000001,length unit,,A unit which is a standard measure of the distance between two points.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000003,,,,,,,,,,,,,,A unit which is a standard measure of the distance between two points.,,,,,,,,,,,length unit,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,UO:0000001,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,length unit,,,,,http://purl.obolibrary.org/obo/uo.owl,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/UO_0000003,time unit,,A unit which is a standard measure of the dimension in which events occur in sequence.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000003,,,,,,,,,,,,,,A unit which is a standard measure of the dimension in which events occur in sequence.,,,,,,,,,,,time unit,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,UO:0000003,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,time unit,,,,,http://purl.obolibrary.org/obo/uo.owl,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000611,availability section,availability of data|data availability|data availability statement|availability|data sharing statement|data archiving,"A part of a document about a resource described in the document, e.g. software, that describes where and/or how that resource can be obtained.",FALSE,,,http://purl.obolibrary.org/obo/IAO_0000314,,,,availability of data|data availability|data availability statement|availability|data sharing statement|data archiving,,,,,,,,,,"A part of a document about a resource described in the document, e.g. software, that describes where and/or how that resource can be obtained.",,,,,,,,,,,availability section,,"The section labelled 'availability and requirements' in a typical scientific journal article, e.g. Qi et al. BMC Bioinformatics. 2014; 15: 11. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3897912/).",,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000612,,,,,,,,,,,,,IAO:0000611,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,availability section,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Bill Baumgartner,,https://github.com/information-artifact-ontology/IAO/issues/234|https://github.com/information-artifact-ontology/IAO/issues/183,
http://purl.obolibrary.org/obo/IAO_0000307,table of abbreviations,,A table where the constituent texts are abbreviations and their expansions,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000306,,,,,,,,,,,,,,A table where the constituent texts are abbreviations and their expansions,,,,,,,,,,,table of abbreviations,,"IAO  information artifact ontology
OBI  ontology of biomedical investiations
GO   gene ontology",,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000125,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000307,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,table of abbreviations,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Lawrence Hunter,,,
http://purl.obolibrary.org/obo/IAO_0000109,measurement datum,,A measurement datum is an information content entity that is a recording of the output of a measurement such as produced by a device.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000027,,,,,,,,,,,,,,A measurement datum is an information content entity that is a recording of the output of a measurement such as produced by a device.,group:OBI|OBI_0000305,,,,,,,,,2/2/2009 is_specified_output of some assay?,measurement datum,,"Examples of measurement data are the recoding of the weight of a mouse as {40,mass,""grams""}, the recording of an observation of the behavior of the mouse {,process,""agitated""}, the recording of the expression level of a gene as measured through the process of microarray experiment {3.4,luminosity,}.",,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000125,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000109,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,measurement datum,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,person:Chris Stoeckert,,,
http://purl.obolibrary.org/obo/IAO_0000573,line graph,line chart,"A line graph is a type of graph created by connecting a series of data
points together with a line.",FALSE,,,http://purl.obolibrary.org/obo/IAO_0000038,,,,line chart,,,,,,,,,,"A line graph is a type of graph created by connecting a series of data
points together with a line.",GROUP:OBI|WEB: http://en.wikipedia.org/wiki/Line_chart,,,,,,,,,,line graph,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000122,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000573,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,line graph,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON:Chris Stoeckert|PERSON:Melanie Courtot,,,
http://purl.obolibrary.org/obo/IAO_0000001,conditional specification,,A directive information entity that specifies what should happen if the trigger condition is fulfilled.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000033,,,,,,,,,,,,,,A directive information entity that specifies what should happen if the trigger condition is fulfilled.,OBI branch derived|OBI_0000349,,,,,,,,,,conditional specification,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000120,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000001,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,conditional specification,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PlanAndPlannedProcess Branch,,,
http://purl.obolibrary.org/obo/BFO_0000029,site,,,FALSE,,,http://purl.obolibrary.org/obo/BFO_0000141,,,,,,,Site,site,,,,,,,,,,,,,,,,,,b is a site means: b is a three-dimensional immaterial entity that is (partially or wholly) bounded by a material entity or it is a three-dimensional immaterial part thereof. (axiom label in BFO2 Reference: [034-002]),the interior of your refrigerator|the hold of a ship|a rabbit hole|your left nostril (a fiat part – the opening – of your left nasal cavity)|the interior of your office|the Piazza San Marco|the interior of the trunk of your car|the Grand Canyon|a hole in the interior of a portion of cheese|an air traffic control region defined in the airspace above an airport|Manhattan Canyon)|the interior of your bedroom|the lumen of your gut|the interior of a kangaroo pouch|the cockpit of an aircraft,,,,,,(forall (x) (if (Site x) (ImmaterialEntity x))) // axiom label in BFO2 CLIF: [034-002] ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000029,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/bfo.owl,site,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_8000017,ontology module subsetted by expressivity,,,FALSE,,,http://purl.obolibrary.org/obo/IAO_8000006,,,,,,,,,,,,,,,,,,,,,,,,,ontology module subsetted by expressivity,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:8000017,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,ontology module subsetted by expressivity,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000577,centrally registered identifier symbol,CRID symbol,A symbol that is part of a CRID and that is sufficient to look up a record from the CRID's registry.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000028,,,,CRID symbol,,,,,,,,,,A symbol that is part of a CRID and that is sufficient to look up a record from the CRID's registry.,"Original proposal from Bjoern, discussions at IAO calls",,,,,,,,,,,,"The sentence ""The article has Pubmed ID 12345."" contains a CRID that has two parts: one part is the CRID symbol, which is '12345'; the other part denotes the CRID registry, which is Pubmed.",,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000120,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000578,IAO:0000577,http://purl.obolibrary.org/obo/IAO_0000578,,,,,,,,,,,,,,,,,,,,,,,,,,,,,centrally registered identifier symbol,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Bjoern Peters|PERSON: Melanie Courtot|PERSON: Bill Hogan|PERSON: Alan Ruttenberg,,,
http://purl.obolibrary.org/obo/BFO_0000182,history,,,FALSE,,,http://purl.obolibrary.org/obo/BFO_0000015,,,,,,,History,history,,,,,,,,,,,,,,,,,,"A history is a process that is the sum of the totality of processes taking place in the spatiotemporal region occupied by a material entity or site, including processes on the surface of the entity or within the cavities to which it serves as host. (axiom label in BFO2 Reference: [138-001])",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000182,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/bfo.owl,history,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000300,textual entity,text,"A textual entity is a part of a manifestation (FRBR sense), a generically dependent continuant whose concretizations are patterns of glyphs intended to be interpreted as words, formulas, etc.",FALSE,,,http://purl.obolibrary.org/obo/IAO_0000030,,,,text,,,,,,,,,,"A textual entity is a part of a manifestation (FRBR sense), a generically dependent continuant whose concretizations are patterns of glyphs intended to be interpreted as words, formulas, etc.",,,,,,,,,,"MC, 2009-09-14 (following IAO call 2009-09-01): textual entities live at the FRBR (http://en.wikipedia.org/wiki/Functional_Requirements_for_Bibliographic_Records) manifestation level. Everything is significant: line break, pdf and html versions of same document are different textual entities.|AR, (IAO call 2009-09-01): a document as a whole is not typically a textual entity, because it has pictures in it - rather there are parts of it that are textual entities. Examples: The title, paragraph 2 sentence 7, etc.",textual entity,,"Words, sentences, paragraphs, and the written (non-figure) parts of publications are all textual entities",,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000123,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000300,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,textual entity,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Lawrence Hunter,,,
http://purl.obolibrary.org/obo/IAO_0000650,"database extract, transform, and load process",ETL,"A planned process which takes as input a database and fills another database by extracting concretizations of information entities from the first, transforming them, and loading the transformed concretizations into the second.",FALSE,,,http://purl.obolibrary.org/obo/COB_0000035,,,,ETL,,,,,,,,,,"A planned process which takes as input a database and fills another database by extracting concretizations of information entities from the first, transforming them, and loading the transformed concretizations into the second.","WEB:https://en.wikipedia.org/wiki/Extract,_transform,_load",,,,,,,,,"Alan Ruttenberg 12/21/16: Maybe this definition instead: A planned process which takes as input a database and copies concretizations from the first, optionally transforms then copies the result to the second|Alan Ruttenberg 12/21/16: We don't define database in IAO, currently, as the bare word is ambiguous. Reasonable interpretations of the word might be the material entity, an information structure, an information content entity. However this definition commits, at least, to there being some material thing which bear concretizations of information entities and that there are new concretizations created during the process.  We consider the ETL process in terms of information entities rather than the concretizations. No committment is made as to whether the specified output.","database extract, transform, and load process",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000030,http://purl.obolibrary.org/obo/IAO_0000030,,,,,,,IAO:0000650,,,,,,,,,,,,,,,,,,,,,,,,,,,,,https://github.com/information-artifact-ontology/IAO,"database extract, transform, and load process",,,,"https://en.wikipedia.org/wiki/Extract,_transform,_load",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON:Alan Ruttenberg,,https://github.com/information-artifact-ontology/IAO/issues/187,
http://purl.obolibrary.org/obo/IAO_8000006,subset ontology module,ontology slim|subset ontology,An ontology module that is extracted from a main ontology module and includes only a subset of entities or axioms.,FALSE,,,http://purl.obolibrary.org/obo/IAO_8000000,,,,ontology slim|subset ontology,,,,,,,,,,An ontology module that is extracted from a main ontology module and includes only a subset of entities or axioms.,,,,,,,,,,,subset ontology module,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:8000006,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,subset ontology module,http://robot.obolibrary.org/filter|http://www.geneontology.org/page/go-slim-and-subset-guide,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/BFO_0000018,zero-dimensional spatial region,,,FALSE,,,http://purl.obolibrary.org/obo/BFO_0000006,,,,,,,ZeroDimensionalSpatialRegion,0d-s-region,,,,,,,,,,,,,,,,,,A zero-dimensional spatial region is a point in space. (axiom label in BFO2 Reference: [037-001]),,,,,,,(forall (x) (if (ZeroDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [037-001] ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000018,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/bfo.owl,zero-dimensional spatial region,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_8000012,species subset ontology module,taxon subset,A subset ontology that is crafted to either include or exclude a taxonomic grouping of species.,FALSE,,,http://purl.obolibrary.org/obo/IAO_8000006,,,,taxon subset,,,,,,,,,,A subset ontology that is crafted to either include or exclude a taxonomic grouping of species.,,,,,,,,,,,species subset ontology module,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:8000012,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,species subset ontology module,https://github.com/obophenotype/uberon/wiki/Taxon-constraints,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_8000010,exclusion subset ontology module,antislim,"A subset of an ontology that is intended to be excluded for some purpose. For example, a blacklist of classes.",FALSE,,,http://purl.obolibrary.org/obo/IAO_8000006,,,,antislim,,,,,,,,,,"A subset of an ontology that is intended to be excluded for some purpose. For example, a blacklist of classes.",,,,,,,,,,,exclusion subset ontology module,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:8000010,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,exclusion subset ontology module,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_8000008,analysis subset ontology module,,An ontology module that is intended for usage in analysis or discovery applications.,FALSE,,,http://purl.obolibrary.org/obo/IAO_8000006,,,,,,,,,,,,,,An ontology module that is intended for usage in analysis or discovery applications.,,,,,,,,,,,analysis ontology module,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:8000008,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,analysis subset ontology module,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000102,data about an ontology part,,"Data about an ontology part is a data item about a part of an ontology, for example a term",FALSE,,,http://purl.obolibrary.org/obo/IAO_0000027,,,,,,,,,,,,,,"Data about an ontology part is a data item about a part of an ontology, for example a term",,,,,,,,,,,data about an ontology part,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000102,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,data about an ontology part,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Person:Alan Ruttenberg,,,
http://purl.obolibrary.org/obo/IAO_0000329,running title,,A shorter version of a document title,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000305,,,,,,,,,,,,,,A shorter version of a document title,,,,,,,,,,,running title,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000125,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000329,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,running title,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Lawrence Hunter,,,
http://purl.obolibrary.org/obo/IAO_0000708,ORCID identifier,Open Researcher and Contributor ID|Open Researcher and Contributor Identifier|ORCID ID|ORCiD,A centrally registered identifier that is issued by ORCID (https://orcid.org/) and used to persistantly identify oneself as a human researcher or contributor.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000578,,,,Open Researcher and Contributor ID|Open Researcher and Contributor Identifier|ORCID ID|ORCiD,,,,,,,,,,A centrally registered identifier that is issued by ORCID (https://orcid.org/) and used to persistantly identify oneself as a human researcher or contributor.,https://orcid.org/,,,,,,,,,"This class was originally defined in Apollo_SV (http://purl.obolibrary.org/obo/APOLLO_SV_00000496) but due to it being more in scope of IAO, it was decided to add it to IAO and deprecate its Apollo_SV equivalent. (2022-10-25)|""You can connect your iD with your professional information — affiliations, grants, publications, peer review, and more. You can use your iD to share your information with other systems, ensuring you get recognition for all your contributions, saving you time and hassle, and reducing the risk of errors."" [https://orcid.org/]",,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000125,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000708,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,ORCID identifier,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://orcid.org/0000-0002-1595-3213,,https://github.com/information-artifact-ontology/IAO/issues/259,
http://purl.obolibrary.org/obo/IAO_0000574,assigning a centrally registered identifier,assigning a CRID,"A planned process in which a new CRID is created, associated with an entity, and stored in the CRID registry thereby registering it as being associated with some entity",FALSE,,,http://purl.obolibrary.org/obo/COB_0000035,,,,assigning a CRID,,,,,,,,,,"A planned process in which a new CRID is created, associated with an entity, and stored in the CRID registry thereby registering it as being associated with some entity",,,,,,,,,,"2014-05-05: It is the CRID registry that assigns CRIDs, not the users of the registry.",,,"A new pubmed ID being created for a journal article, and the associated pubmed record containing information to the journal article. A license plate number registered at the DMV to be belonging to a specific vehicle and owner. Placing a barcode on a product and entering information in a database that this barcode is assigned.",,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000120,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000579,,,,,http://purl.obolibrary.org/obo/IAO_0000577,,,,,,,IAO:0000574,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,assigning a centrally registered identifier,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Person:Melanie Courtot|Person:Bjoern Peters|Person:Alan Ruttenberg,,,
http://purl.obolibrary.org/obo/OBI_0500000,study design,,A plan specification comprised of protocols (which may specify how and what kinds of data will be gathered) that are executed as part of an investigation and is realized during a study design execution.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000104,,,,,,,,,,,,,,A plan specification comprised of protocols (which may specify how and what kinds of data will be gathered) that are executed as part of an investigation and is realized during a study design execution.,,,,,,,,,,,study design,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OBI:0500000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,study design,,,,,http://purl.obolibrary.org/obo/obi.owl,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000645,tables section,tables,A part of a document that contains one or more tables.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000314,,,,tables,,,,,,,,,,A part of a document that contains one or more tables.,,,,,,,,,,,tables section,,The section labelled 'tables' in a typical scientific journal article.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000306,,,,,,,,,,,,,IAO:0000645,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,tables section,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Bill Baumgartner,,https://github.com/information-artifact-ontology/IAO/issues/183,
http://purl.obolibrary.org/obo/BFO_0000003,occurrent,,"An entity that has temporal parts and that happens, unfolds or develops through time.",FALSE,,,http://purl.obolibrary.org/obo/BFO_0000001,,,,,,,Occurrent,occurrent,,,,,,"An entity that has temporal parts and that happens, unfolds or develops through time.",,,,,,,,,,"Simons uses different terminology for relations of occurrents to regions: Denote the spatio-temporal location of a given occurrent e by 'spn[e]' and call this region its span. We may say an occurrent is at its span, in any larger region, and covers any smaller region. Now suppose we have fixed a frame of reference so that we can speak not merely of spatio-temporal but also of spatial regions (places) and temporal regions (times). The spread of an occurrent, (relative to a frame of reference) is the space it exactly occupies, and its spell is likewise the time it exactly occupies. We write 'spr[e]' and `spl[e]' respectively for the spread and spell of e, omitting mention of the frame.|Occurrent doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the sum of a process and the process boundary of another process.|BFO 2 Reference: every occurrent that is not a temporal or spatiotemporal region is s-dependent on some independent continuant that is not a spatial region|BFO 2 Reference: s-dependence obtains between every process and its participants in the sense that, as a matter of necessity, this process could not have existed unless these or those participants existed also. A process may have a succession of participants at different phases of its unfolding. Thus there may be different players on the field at different times during the course of a football game; but the process which is the entire game s-depends_on all of these players nonetheless. Some temporal parts of this process will s-depend_on on only some of the players.",,An occurrent is an entity that unfolds itself in time or it is the instantaneous boundary of such an entity (for example a beginning or an ending) or it is a temporal or spatiotemporal region which such an entity occupies_temporal_region or occupies_spatiotemporal_region. (axiom label in BFO2 Reference: [077-002]),,,,,,,(forall (x) (if (Occurrent x) (exists (r) (and (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion x r))))) // axiom label in BFO2 CLIF: [108-001] |(forall (x) (iff (Occurrent x) (and (Entity x) (exists (y) (temporalPartOf y x))))) // axiom label in BFO2 CLIF: [079-001] ,Every occurrent occupies_spatiotemporal_region some spatiotemporal region. (axiom label in BFO2 Reference: [108-001])|b is an occurrent entity iff b is an entity that has temporal parts. (axiom label in BFO2 Reference: [079-001]),,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000003,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/bfo.owl,occurrent,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/BFO_0000004,independent continuant,,b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002]),FALSE,,,http://purl.obolibrary.org/obo/BFO_0000002,,,,,,,IndependentContinuant,ic,,,,,,b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002]),,,,,,,,,,,,,a leg|an orchestra.|a molecule|an organism|the bottom right portion of a human torso|the interior of your mouth|an atom|a chair|a spatial region|a heart,,,,,,(iff (IndependentContinuant a) (and (Continuant a) (not (exists (b t) (specificallyDependsOnAt a b t))))) // axiom label in BFO2 CLIF: [017-002] |(forall (x t) (if (and (IndependentContinuant x) (existsAt x t)) (exists (y) (and (Entity y) (specificallyDependsOnAt y x t))))) // axiom label in BFO2 CLIF: [018-002] |(forall (x t) (if (IndependentContinuant x) (exists (r) (and (SpatialRegion r) (locatedInAt x r t))))) // axiom label in BFO2 CLIF: [134-001] ,"For any independent continuant b and any time t there is some spatial region r such that b is located_in r at t. (axiom label in BFO2 Reference: [134-001])|For every independent continuant b and time t during the region of time spanned by its life, there are entities which s-depends_on b during t. (axiom label in BFO2 Reference: [018-002])",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000004,,,,,,,,,,,,,,,,,,,,,,,,,,,,"A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything.",http://purl.obolibrary.org/obo/bfo.owl,independent continuant,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/PATO_0000051,morphology,,A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure.,FALSE,,,http://purl.obolibrary.org/obo/PATO_0001241,,,,,,,,,,,,,,A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure.,,,,,,,,,,,morphology,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PATO:0000051,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,morphology,,,,,http://purl.obolibrary.org/obo/pato.owl,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000005,objective specification,goal specification,A directive information entity that describes an intended process endpoint. When part of a plan specification the concretization is realized in a planned process in which the bearer tries to effect the world so that the process endpoint is achieved.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000033,,,,goal specification,,,,,,,,,,A directive information entity that describes an intended process endpoint. When part of a plan specification the concretization is realized in a planned process in which the bearer tries to effect the world so that the process endpoint is achieved.,OBI_0000217|OBI Plan and Planned Process/Roles Branch,,,,,,,,,"2009-03-16: original definition when imported from OBI read: ""objective is an non realizable information entity which can serve as that  proper part of a plan towards which the realization of the plan is directed.""|Answers the question, why did you do this experiment?|2014-03-31: In the example of usage (""In the protocol of a ChIP assay the objective specification says to identify protein and DNA interaction"") there is a protocol which is the ChIP assay protocol. In addition to being concretized on paper, the protocol can be concretized as a realizable entity, such as a plan that inheres in a person. The objective specification is the part that says that some protein and DNA interactions are identified. This is a specification of a process endpoint: the boundary in the process before which they are not identified and after which they are. During the realization of the plan, the goal is to get to the point of having the interactions, and participants in the realization of the plan try to do that.",objective specification,,In the protocol of a ChIP assay the objective specification says to identify protein and DNA interaction.,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000122,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000005,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,objective specification,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Bjoern Peters|PERSON: Jennifer Fostel|PERSON: Alan Ruttenberg|PERSON: Barry Smith,,,
http://purl.obolibrary.org/obo/IAO_0000313,patent,,A document that has been accepted by a patent authority,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000310,,,,,,,,,,,,,,A document that has been accepted by a patent authority,,,,,,,,,,,patent,,"US Patent 6,449,603",,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000120,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000313,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,patent,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Lawrence Hunter,,,
http://purl.obolibrary.org/obo/IAO_0000305,document title,,A textual entity that names a document,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000300,,,,,,,,,,,,,,A textual entity that names a document,,,,,,,,,,,document title,,Textual characteristics of traditional and Open Access scientific journals are similar,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000125,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000305,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,document title,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Lawrence Hunter,,,
http://purl.obolibrary.org/obo/IAO_0000624,funding source declaration textual entity,,A textual entity documenting the source of funding that supported some study.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000300,,,,,,,,,,,,,,A textual entity documenting the source of funding that supported some study.,,,,,,,,,,,funding souce declaration textual entity,,"From Stephan et al. Accid Anal Prev. 2011 May; 43(3): 1062–1067. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3062852/):

This study was supported by the International Collaborative Research Grants Scheme with joint grants from the Wellcome Trust UK (GR071587MA) and the Australian NHMRC (268055). The funding sources played no role in study design, data collection, analysis or interpretation, writing the report, or the decision to submit the paper for publication.",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000624,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,funding source declaration textual entity,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Bill Baumgartner,,https://github.com/information-artifact-ontology/IAO/issues/183,
http://purl.obolibrary.org/obo/IAO_0000630,keywords section,keywords,A part of a document where keywords selected by the author to categorize the major theme(s) of a document are listed.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000314,,,,keywords,,,,,,,,,,A part of a document where keywords selected by the author to categorize the major theme(s) of a document are listed.,,,,,,,,,,,keywords section,,The section labelled 'keywords' in a typical scientific journal article.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000629,,,,,,,,,,,,,IAO:0000630,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,keywords section,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Bill Baumgartner,,https://github.com/information-artifact-ontology/IAO/issues/183,
http://purl.obolibrary.org/obo/IAO_0000408,length measurement datum,,A scalar measurement datum that is the result of measurement of length quality,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000032,,,,,,,,,,,,,,A scalar measurement datum that is the result of measurement of length quality,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000123,,,,,,,,,http://purl.obolibrary.org/obo/UO_0000001,,,,,,,,,,,,,,,,,,,,IAO:0000408,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,length measurement datum,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/PATO_0000122,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Alan Ruttenberg,,,
http://purl.obolibrary.org/obo/IAO_0000635,patients section,,A part of a document about the patients that participated in a study.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000314,,,,,,,,,,,,,,A part of a document about the patients that participated in a study.,,,,,,,,,,,patients section,,"The section labelled 'patients' in a typical scientific journal article, e.g. in Citak et al. Acta Orthop. 2013 Jun; 84(3): 326–327. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3715825/)",,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000636,,,,,,,,,,,,,IAO:0000635,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,patients section,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Bill Baumgartner,,https://github.com/information-artifact-ontology/IAO/issues/183,
http://purl.obolibrary.org/obo/IAO_8000015,template generated ontology module,,An ontology module that is automatically generated from a template specification and fillers for slots in that template.,FALSE,,,http://purl.obolibrary.org/obo/IAO_8000014,,,,,,,,,,,,,,An ontology module that is automatically generated from a template specification and fillers for slots in that template.,,,,,,,,,,,template generated ontology module,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:8000015,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,template generated ontology module,http://robot.obolibrary.org/template|https://doi.org/10.1186/s13326-017-0126-0|https://github.com/dosumis/dead_simple_owl_design_patterns/,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000319,discussion section of a publication about an investigation,discussion section|discussion|discussions,A part of a publication about an investigation that is about the study interpretation of the investigation,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000314,,,,discussion section|discussion|discussions,,,,,,,,,,A part of a publication about an investigation that is about the study interpretation of the investigation,,,,,,,,,,,discussion section of a publication about an investigation,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000120,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000319,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,discussion section of a publication about an investigation,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Lawrence Hunter,,https://github.com/information-artifact-ontology/IAO/issues/234,
http://purl.obolibrary.org/obo/IAO_0000030,information content entity,,A generically dependent continuant that is about some thing.,FALSE,,,http://purl.obolibrary.org/obo/BFO_0000031,,,,,,,,,,,,,,A generically dependent continuant that is about some thing.,OBI_0000142,,,,,,,,,"information_content_entity 'is_encoded_in' some digital_entity in obi before split (040907). information_content_entity 'is_encoded_in' some physical_document in obi before split (040907).

Previous. An information content entity is a non-realizable information entity that 'is encoded in' some digital or physical entity.|2014-03-10: The use of ""thing"" is intended to be general enough to include universals and configurations (see https://groups.google.com/d/msg/information-ontology/GBxvYZCk1oc/-L6B5fSBBTQJ).",information content entity,,"Examples of information content entites include journal articles, data, graphical layouts, and graphs.",,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000122,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000030,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,information content entity,,,,,,,,http://purl.obolibrary.org/obo/BFO_0000001,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Chris Stoeckert,,,
http://purl.obolibrary.org/obo/IAO_0000403,three dimensional cartesian spatial coordinate datum,,A cartesion spatial coordinate datum that  uses three values to specify a position within a three dimensional spatial region,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000400,,,,,,,,,,,,,,A cartesion spatial coordinate datum that  uses three values to specify a position within a three dimensional spatial region,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000123,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000403,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,three dimensional cartesian spatial coordinate datum,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Alan Ruttenberg,,,
http://purl.obolibrary.org/obo/IAO_8000019,ontology module subsetted by OWL profile,,,FALSE,,,http://purl.obolibrary.org/obo/IAO_8000017,,,,,,,,,,,,,,,,,,,,,,,,,ontology module subsetted by OWL profile,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:8000019,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,ontology module subsetted by OWL profile,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OBI_0000066,investigation,,"a planned process that consists of parts: planning, study design execution, documentation and which produce conclusion(s).",FALSE,,,http://purl.obolibrary.org/obo/COB_0000035,,,,,,,,,,,,,,"a planned process that consists of parts: planning, study design execution, documentation and which produce conclusion(s).",,,,,,,,,,,investigation,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OBI:0000066,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,investigation,,,,,http://purl.obolibrary.org/obo/obi.owl,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/BFO_0000034,function,,,FALSE,,,http://purl.obolibrary.org/obo/BFO_0000016,,,,,,,Function,function,,,,,,,,,,,,,,,,"BFO 2 Reference: In the past, we have distinguished two varieties of function, artifactual function and biological function. These are not asserted subtypes of BFO:function however, since the same function – for example: to pump, to transport – can exist both in artifacts and in biological entities. The asserted subtypes of function that would be needed in order to yield a separate monoheirarchy are not artifactual function, biological function, etc., but rather transporting function, pumping function, etc.",,"A function is a disposition that exists in virtue of the bearer’s physical make-up and this physical make-up is something the bearer possesses because it came into being, either through evolution (in the case of natural biological entities) or through intentional design (in the case of artifacts), in order to realize processes of a certain sort. (axiom label in BFO2 Reference: [064-001])",the function of a heart pacemaker to regulate the beating of a heart through electricity|the function of a hammer to drive in nails|the function of amylase in saliva to break down starch into sugar,,,,,,(forall (x) (if (Function x) (Disposition x))) // axiom label in BFO2 CLIF: [064-001] ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000034,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/bfo.owl,function,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000017,model number,,"A model number is an information content entity specifically borne by catalogs, design specifications, advertising materials, inventory systems and similar  that is about manufactured objects of the same class. The model number is an alternative term for the class. The manufactered objects may or may not also bear the model number. Model numbers can be encoded in a variety of other information objects, such as bar codes, numerals, or patterns of dots.",FALSE,,,http://purl.obolibrary.org/obo/IAO_0000028,,,,,,,,,,,,,,"A model number is an information content entity specifically borne by catalogs, design specifications, advertising materials, inventory systems and similar  that is about manufactured objects of the same class. The model number is an alternative term for the class. The manufactered objects may or may not also bear the model number. Model numbers can be encoded in a variety of other information objects, such as bar codes, numerals, or patterns of dots.",,,,,,,,,,"manufactered items may have more than one model number, sometimes by rebranding, or because companies are sold and the products issued new model numbers",model number,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000125,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000017,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,model number,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Person: Alan Ruttenberg,,,
http://purl.obolibrary.org/obo/IAO_0000301,citation,,A textual entity intended to identify a particular publication.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000300,,,,,,,,,,,,,,A textual entity intended to identify a particular publication.,,,,,,,,,,,citation,,"Verspoor, K., Cohen, KB., Hunter, L. Textual characteristics of traditional and Open Access scientific journals are similar, BMC Bioinformatics 2009, 10:183.",,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000125,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000301,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,citation,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000310,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Lawrence Hunter,,,
http://purl.obolibrary.org/obo/IAO_0020000,identifier,proper name,An information content entity that is the outcome of a dubbing process and is used to refer to one instance of entity shared by a group of people to refer to that individual entity.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000030,,,,proper name,,,,,,,,,,An information content entity that is the outcome of a dubbing process and is used to refer to one instance of entity shared by a group of people to refer to that individual entity.,,,,,,,,,,,identifier,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0020000,,,,,Mathias Brochhausen,,,,,,,,,,,,,,,,,,,,,,,"Sep 29, 2016: The current definition has been amended from the previous version: ""A proper name is an information content entity that is the outcome of a dubbing process and is used to refer to one instance of entity shared by a group of people to refer to that individual entity."" to more accuratly reflect the necessary and sufficient condition on the class. (MB)",,identifier,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Justin Whorton|Mathias Brochhausen,,https://github.com/information-artifact-ontology/IAO/issues/237,
http://purl.obolibrary.org/obo/IAO_0000321,author list,,A part of a document that enumerates the authors of the document,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000314,,,,,,,,,,,,,,A part of a document that enumerates the authors of the document,,,,,,,,,,,author list,,Lawrence Hunter and Kevin Brettonel Cohen,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000120,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000302,,,,,,,,,,,,,IAO:0000321,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,author list,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Lawrence Hunter,,,
http://purl.obolibrary.org/obo/IAO_0020001,grapheme,,An information content entity that is a fundamental unit in a written language.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000030,,,,,,,,,,,,,,An information content entity that is a fundamental unit in a written language.,http://en.wikipedia.org/wiki/Grapheme,,,,,,,,,,,,"alphabetic letters, Chinese characters, numerical digits, punctuation marks, and the individual symbols of any of the world's writing systems",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0020001,,,,,Mathias Brochhausen,,,,,,,,,,,,,,,,,,,,,,,Grapheme is not about anything and hence is likely to not be an information content entity. If a new subclass of GDC for information structure entities is created it should move there.,,grapheme,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Justin Whorton,,https://github.com/information-artifact-ontology/IAO/issues/237,
http://purl.obolibrary.org/obo/BFO_0000142,one-dimensional continuant fiat boundary,,,FALSE,,,http://purl.obolibrary.org/obo/BFO_0000140,,,,,,,OneDimensionalContinuantFiatBoundary,1d-cf-boundary,,,,,,,,,,,,,,,,,,a one-dimensional continuant fiat boundary is a continuous fiat line whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [032-001]),the line separating the outer surface of the mucosa of the lower lip from the outer surface of the skin of the chin.|all lines of latitude and longitude|The Equator|the median sulcus of your tongue|all geopolitical boundaries,,,,,,(iff (OneDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (OneDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [032-001] ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000142,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/bfo.owl,one-dimensional continuant fiat boundary,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/BFO_0000027,object aggregate,,,FALSE,,,http://purl.obolibrary.org/obo/BFO_0000040,,,,,,,ObjectAggregate,object-aggregate,,,,,,,"ISBN:978-3-938793-98-5pp124-158#Thomas Bittner and Barry Smith, 'A Theory of Granular Partitions', in K. Munn and B. Smith (eds.), Applied Ontology: An Introduction, Frankfurt/Lancaster: ontos, 2008, 125-158.",,,,,,,,,"An entity a is an object aggregate if and only if there is a mutually exhaustive and pairwise disjoint partition of a into objects |BFO 2 Reference: object aggregates may gain and lose parts while remaining numerically identical (one and the same individual) over time. This holds both for aggregates whose membership is determined naturally (the aggregate of cells in your body) and aggregates determined by fiat (a baseball team, a congressional committee).",,b is an object aggregate means: b is a material entity consisting exactly of a plurality of objects as member_parts at all times at which b exists. (axiom label in BFO2 Reference: [025-004]),"the nitrogen atoms in the atmosphere|the aggregate of bearings in a constant velocity axle joint|a collection of cells in a blood biobank.|the restaurants in Palo Alto|defined via attributive delimitations such as: the patients in this hospital|a symphony orchestra|the aggregate of blood cells in your body|defined through physical attachment: the aggregate of atoms in a lump of granite|defined through physical containment: the aggregate of molecules of carbon dioxide in a sealed container|an organization is an aggregate whose member parts have roles of specific types (for example in a jazz band, a chess club, a football team)|defined by fiat: the aggregate of members of an organization|your collection of Meissen ceramic plates.|a swarm of bees is an aggregate of members who are linked together through natural bonds",,,,,,(forall (x) (if (ObjectAggregate x) (and (MaterialEntity x) (forall (t) (if (existsAt x t) (exists (y z) (and (Object y) (Object z) (memberPartOfAt y x t) (memberPartOfAt z x t) (not (= y z)))))) (not (exists (w t_1) (and (memberPartOfAt w x t_1) (not (Object w)))))))) // axiom label in BFO2 CLIF: [025-004] ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000027,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/bfo.owl,object aggregate,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000615,conclusion section,concluding remarks|conclusions|summary|conclusion|findings,A part of a document used to summarize the findings discussed in the document. The conclusion section is typically found near the end of a document.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000314,,,,concluding remarks|conclusions|summary|conclusion|findings,,,,,,,,,,A part of a document used to summarize the findings discussed in the document. The conclusion section is typically found near the end of a document.,,,,,,,,,,,conclusion section,,The section labelled 'conclusion' in a typical scientific journal article.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000144,,,,,,,,,,,,,IAO:0000615,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,conclusion section,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Bill Baumgartner,,https://github.com/information-artifact-ontology/IAO/issues/183,
http://purl.obolibrary.org/obo/BFO_0000026,one-dimensional spatial region,,,FALSE,,,http://purl.obolibrary.org/obo/BFO_0000006,,,,,,,OneDimensionalSpatialRegion,1d-s-region,,,,,,,,,,,,,,,,,,A one-dimensional spatial region is a line or aggregate of lines stretching from one point in space to another. (axiom label in BFO2 Reference: [038-001]),an edge of a cube-shaped portion of space.,,,,,,(forall (x) (if (OneDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [038-001] ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000026,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/bfo.owl,one-dimensional spatial region,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000132,lot number,batch number,"A lot number is an information content entity which is an identical sequence of character borne by part of manufactured product or its packaging for each instances of a product class in a discrete batch of an item. Lot numbers are usually assigned to each separate production run of an item. Manufacturing as a lot might be due to a variety of reasons, for example,  a single process during which many individuals are made from the same portion of source material. Lot numbers can be encoded in a pattern  of other information objects, such as bar codes, numerals, or patterns of dots.",FALSE,,,http://purl.obolibrary.org/obo/IAO_0000028,,,,batch number,,,,,,,,,,"A lot number is an information content entity which is an identical sequence of character borne by part of manufactured product or its packaging for each instances of a product class in a discrete batch of an item. Lot numbers are usually assigned to each separate production run of an item. Manufacturing as a lot might be due to a variety of reasons, for example,  a single process during which many individuals are made from the same portion of source material. Lot numbers can be encoded in a pattern  of other information objects, such as bar codes, numerals, or patterns of dots.",,,,,,,,,,,lot number,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000123,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000132,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,lot number,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,GROUP: IAO,,,
http://purl.obolibrary.org/obo/COB_0000082,planned process,,A process that is initiated by an agent who intends to carry out a plan to achieve an objective through one or more actions as described in a plan specification.,FALSE,,,http://purl.obolibrary.org/obo/BFO_0000015,,,,,,,,,,,,,,A process that is initiated by an agent who intends to carry out a plan to achieve an objective through one or more actions as described in a plan specification.,,,,,,,,,,,planned process,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,COB:0000082,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,planned process,,,,,http://purl.obolibrary.org/obo/cob.owl,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000129,version number,,A version number is an information content entity which is a sequence of characters borne by part of each of a class of manufactured products or its packaging and indicates its order within a set of other products having the same name.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000028,,,,,,,,,,,,,,A version number is an information content entity which is a sequence of characters borne by part of each of a class of manufactured products or its packaging and indicates its order within a set of other products having the same name.,,,,,,,,,,"Note: we feel that at the moment we are happy with a general version number, and that we will subclass as needed in the future. For example, see 7. genome sequence version",version number,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000123,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000129,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,version number,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,GROUP: IAO,,,
http://purl.obolibrary.org/obo/IAO_0000100,homogenous data collection,data set,A data item that is an aggregate of other data items of the same type that have something in common. Averages and distributions can be determined for data sets.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0001000,,,,data set,,,,,,,,,,A data item that is an aggregate of other data items of the same type that have something in common. Averages and distributions can be determined for data sets.,group:OBI,,,,,,,,,"2014-05-05: Data sets are aggregates and thus must include two or more data items. We have chosen not to add logical axioms to make this restriction.|2009/10/23 Alan Ruttenberg. The intention is that this term represent collections of like data. So this isn't for, e.g. the whole contents of a cel file, which includes parameters, metadata etc. This is more like java arrays of a certain rather specific type",homogenous data collection,,Intensity values in a CEL file or from multiple CEL files comprise a data set (as opposed to the CEL files themselves).,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000125,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000100,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,homogenous data collection,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,person:Allyson Lister|person:Chris Stoeckert,,,
http://purl.obolibrary.org/obo/IAO_0000047,obsolete2_text based digital entity,,A text based digital entity is a digital entity that is encoded so that it only contains text characters.,TRUE,,,http://www.geneontology.org/formats/oboInOwl#ObsoleteClass,,,,,,,,,,,,,,A text based digital entity is a digital entity that is encoded so that it only contains text characters.,OBI_0000132|group:OBI,,,,,,,,,"digital_entity|3/22/2009 Alan Ruttenberg, obsoleted per http://groups.google.com/group/information-ontology/browse_thread/thread/789ad4b7708d5cf4
superclass was 'digital document'",text based digital entity,,"XML file, C++ source code file",,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000103,,,,,,,,,,,,,,,,IAO:0000047,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,obsolete2_text based digital entity,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,person:Chris Stoeckert,,,
http://purl.obolibrary.org/obo/IAO_0000445,document in preparation for publication,,A document that is in preparation for submission to be published.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000310,,,,,,,,,,,,,,A document that is in preparation for submission to be published.,EFO_0001795 in preparation,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000120,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000445,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,document in preparation for publication,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VEuPathDB,,,,,,,,,,,,,,PERSON: Jie Zheng,,https://github.com/information-artifact-ontology/IAO/issues/232,
http://purl.obolibrary.org/obo/IAO_0020010,identifier creating process,dubbing process|naming,A planned process that provides a reference to an individual entity shared by a group of subscribers to refer to that individual entity.,FALSE,,,http://purl.obolibrary.org/obo/COB_0000035,,,,dubbing process|naming,,,,,,,,,,A planned process that provides a reference to an individual entity shared by a group of subscribers to refer to that individual entity.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0020010,,,,,Mathias Brochhausen,,,,,,,,,,,,,,,,,,,,,,,,,identifier creating process,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Justin Whorton|Mathias Brochhausen,,https://github.com/information-artifact-ontology/IAO/issues/237,
http://purl.obolibrary.org/obo/BFO_0000030,object,,,FALSE,,,http://purl.obolibrary.org/obo/BFO_0000040,,,,,,,Object,object,,,,,,,,,,,,,,,,"BFO 2 Reference: Each object is such that there are entities of which we can assert unproblematically that they lie in its interior, and other entities of which we can assert unproblematically that they lie in its exterior. This may not be so for entities lying at or near the boundary between the interior and exterior. This means that two objects – for example the two cells depicted in Figure 3 – may be such that there are material entities crossing their boundaries which belong determinately to neither cell. Something similar obtains in certain cases of conjoined twins (see below).|BFO 2 Reference: ‘objects’ are sometimes referred to as ‘grains’ [74|BFO 2 Reference: an object is a maximal causally unified material entity|BFO 2 Reference: To say that b is causally unified means: b is a material entity which is such that its material parts are tied together in such a way that, in environments typical for entities of the type in question,if c, a continuant part of b that is in the interior of b at t, is larger than a certain threshold size (which will be determined differently from case to case, depending on factors such as porosity of external cover) and is moved in space to be at t at a location on the exterior of the spatial region that had been occupied by b at t, then either b’s other parts will be moved in coordinated fashion or b will be damaged (be affected, for example, by breakage or tearing) in the interval between t and t.causal changes in one part of b can have consequences for other parts of b without the mediation of any entity that lies on the exterior of b. Material entities with no proper material parts would satisfy these conditions trivially. Candidate examples of types of causal unity for material entities of more complex sorts are as follows (this is not intended to be an exhaustive list):CU1: Causal unity via physical coveringHere the parts in the interior of the unified entity are combined together causally through a common membrane or other physical covering\. The latter points outwards toward and may serve a protective function in relation to what lies on the exterior of the entity [13, 47|BFO 2 Reference: BFO rests on the presupposition that at multiple micro-, meso- and macroscopic scales reality exhibits certain stable, spatially separated or separable material units, combined or combinable into aggregates of various sorts (for example organisms into what are called ‘populations’). Such units play a central role in almost all domains of natural science from particle physics to cosmology. Many scientific laws govern the units in question, employing general terms (such as ‘molecule’ or ‘planet’) referring to the types and subtypes of units, and also to the types and subtypes of the processes through which such units develop and interact. The division of reality into such natural units is at the heart of biological science, as also is the fact that these units may form higher-level units (as cells form multicellular organisms) and that they may also form aggregates of units, for example as cells form portions of tissue and organs form families, herds, breeds, species, and so on. At the same time, the division of certain portions of reality into engineered units (manufactured artifacts) is the basis of modern industrial technology, which rests on the distributed mass production of engineered parts through division of labor and on their assembly into larger, compound units such as cars and laptops. The division of portions of reality into units is one starting point for the phenomenon of counting.",,b is an object means: b is a material entity which manifests causal unity of one or other of the types CUn listed above & is of a type (a material universal) instances of which are maximal relative to this criterion of causal unity. (axiom label in BFO2 Reference: [024-001]),organism|organelle|cell|atom|cells and organisms|molecule|grain of sand|planet|solid portions of matter|engineered artifacts|star,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000030,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/bfo.owl,object,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000617,conflict of interest textual entity,,"A textual entity that expresses a situation involving one or more of the authors, or the funding source of a document whereby the authors or funding source stand to potentially gain (typically financially) from the results reported in the document.",FALSE,,,http://purl.obolibrary.org/obo/IAO_0000300,,,,,,,,,,,,,,"A textual entity that expresses a situation involving one or more of the authors, or the funding source of a document whereby the authors or funding source stand to potentially gain (typically financially) from the results reported in the document.",,,,,,,,,,,conflict of interest statement,,SD [an author] is a Merck employee and Merck is the sponsor of this study. [Taken from 'Effects of obstructive sleep apnoea risk on postoperative respiratory complications: protocol for a hospital-based registry study' Shin et al. 2016  (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4735131/)] ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000617,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,conflict of interest textual entity,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Bill Baumgartner,,https://github.com/information-artifact-ontology/IAO/issues/183,
http://purl.obolibrary.org/obo/BFO_0000144,process profile,,b is a process_profile =Def. there is some process c such that b process_profile_of c (axiom label in BFO2 Reference: [093-002]),FALSE,,,http://purl.obolibrary.org/obo/BFO_0000015,,,,,,,ProcessProfile,process-profile,,,,,,b is a process_profile =Def. there is some process c such that b process_profile_of c (axiom label in BFO2 Reference: [093-002]),,,,,,,,,,,,"b process_profile_of c holds when b proper_occurrent_part_of c& there is some proper_occurrent_part d of c which has no parts in common with b & is mutually dependent on b& is such that b, c and d occupy the same temporal region (axiom label in BFO2 Reference: [094-005])","The simplest type of process profiles are what we shall call ‘quality process profiles’, which are the process profiles which serve as the foci of the sort of selective abstraction that is involved when measurements are made of changes in single qualities, as illustrated, for example, by process profiles of mass, temperature, aortic pressure, and so on.|One important sub-family of rate process profiles is illustrated by the beat or frequency profiles of cyclical processes, illustrated by the 60 beats per minute beating process of John’s heart, or the 120 beats per minute drumming process involved in one of John’s performances in a rock band, and so on. Each such process includes what we shall call a beat process profile instance as part, a subtype of rate process profile in which the salient ratio is not distance covered but rather number of beat cycles per unit of time. Each beat process profile instance instantiates the determinable universal beat process profile. But it also instantiates multiple more specialized universals at lower levels of generality, selected from   rate process profilebeat process profileregular beat process profile3 bpm beat process profile4 bpm beat process profileirregular beat process profileincreasing beat process profileand so on.In the case of a regular beat process profile, a rate can be assigned in the simplest possible fashion by dividing the number of cycles by the length of the temporal region occupied by the beating process profile as a whole. Irregular process profiles of this sort, for example as identified in the clinic, or in the readings on an aircraft instrument panel, are often of diagnostic significance.|On a somewhat higher level of complexity are what we shall call rate process profiles, which are the targets of selective abstraction focused not on determinate quality magnitudes plotted over time, but rather on certain ratios between these magnitudes and elapsed times. A speed process profile, for example, is represented by a graph plotting against time the ratio of distance covered per unit of time. Since rates may change, and since such changes, too, may have rates of change, we have to deal here with a hierarchy of process profile universals at successive levels",,,,,,(forall (x y) (if (processProfileOf x y) (and (properContinuantPartOf x y) (exists (z t) (and (properOccurrentPartOf z y) (TemporalRegion t) (occupiesSpatioTemporalRegion x t) (occupiesSpatioTemporalRegion y t) (occupiesSpatioTemporalRegion z t) (not (exists (w) (and (occurrentPartOf w x) (occurrentPartOf w z))))))))) // axiom label in BFO2 CLIF: [094-005] |(iff (ProcessProfile a) (exists (b) (and (Process b) (processProfileOf a b)))) // axiom label in BFO2 CLIF: [093-002] ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000144,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/bfo.owl,process profile,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000007,action specification,,A directive information entity that describes an action the bearer will take.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000033,,,,,,,,,,,,,,A directive information entity that describes an action the bearer will take.,OBI Plan and Planned Process branch,,,,,,,,,,,,Pour the contents of flask 1 into flask 2,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000122,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000007,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,action specification,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Alan Ruttenberg,,,
http://purl.obolibrary.org/obo/BFO_0000019,quality,,,FALSE,,,http://purl.obolibrary.org/obo/BFO_0000020,,,,,,,Quality,quality,,,,,,,,,,,,,,,,,,"a quality is a specifically dependent continuant that, in contrast to roles and dispositions, does not require any further process in order to be realized. (axiom label in BFO2 Reference: [055-001])",the color of a tomato|the ambient temperature of this portion of air|the length of the circumference of your waist|the mass of this piece of gold.|the shape of your nostril|the shape of your nose,,,,,,(forall (x) (if (Quality x) (SpecificallyDependentContinuant x))) // axiom label in BFO2 CLIF: [055-001] |(forall (x) (if (exists (t) (and (existsAt x t) (Quality x))) (forall (t_1) (if (existsAt x t_1) (Quality x))))) // axiom label in BFO2 CLIF: [105-001] ,"If an entity is a quality at any time that it exists, then it is a quality at every time that it exists. (axiom label in BFO2 Reference: [105-001])",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000019,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/bfo.owl,quality,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000310,document,,A collection of information content entities intended to be understood together as a whole,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000030,,,,,,,,,,,,,,A collection of information content entities intended to be understood together as a whole,,,,,,,,,,,document,,"A journal article, patent application, laboratory notebook, or a book",,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000120,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000310,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,document,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Lawrence Hunter,,,
http://purl.obolibrary.org/obo/IAO_0000579,centrally registered identifier registry,CRID registry,"A code set of CRID records, each consisting of a CRID symbol and additional information which was recorded in the code set through an assigning a centrally registered identifier process.",FALSE,,,http://purl.obolibrary.org/obo/IAO_0020020,,,,CRID registry,,,,,,,,,,"A code set of CRID records, each consisting of a CRID symbol and additional information which was recorded in the code set through an assigning a centrally registered identifier process.","Original proposal from Bjoern, discussions at IAO calls",,,,,,,,,,,,PubMed is a CRID registry. It has a code set of PubMed identifiers associated with journal articles. ,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000120,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000579,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,centrally registered identifier registry,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Justin Whorton|PERSON: Bjoern Peters|PERSON: Melanie Courtot|PERSON: Bill Hogan|PERSON: Alan Ruttenberg,,https://github.com/information-artifact-ontology/IAO/issues/237,
http://purl.obolibrary.org/obo/IAO_0000644,statistical analysis section,statistical analysis,A part of the document used to describe the statistical methodologies employed in the work presented in the document.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000314,,,,statistical analysis,,,,,,,,,,A part of the document used to describe the statistical methodologies employed in the work presented in the document.,,,,,,,,,,,statistical analysis section,,"The section labelled 'statistical analysis' in a typical scientific journal article, e.g. Mondo et al. Cardiovasc J Afr. 2013 Mar; 24(2): 28–33. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3734881/)",,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000643,,,,,,,,,,,,,IAO:0000644,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,statistical analysis section,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Bill Baumgartner,,https://github.com/information-artifact-ontology/IAO/issues/183,
http://purl.obolibrary.org/obo/IAO_0000324,acknowledgements section,acknowledgements|acknowledgement|acknowledgment|acknowledgments,Part of a publication that is about the contributions of people or institutions other than the authors.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000314,,,,acknowledgements|acknowledgement|acknowledgment|acknowledgments,,,,,,,,,,Part of a publication that is about the contributions of people or institutions other than the authors.,,,,,,,,,,,acknowledgements section,,The authors wish to thank Alan Ruttenberg for his constructive comments about an earlier draft of this manuscript,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000120,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000324,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,acknowledgements section,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Lawrence Hunter,,https://github.com/information-artifact-ontology/IAO/issues/234,
http://purl.obolibrary.org/obo/IAO_0000024,obsolete_unit of measure,,a unit of measure is the quality of some material entity compared to which another quality is some multiple of.,TRUE,,,http://www.geneontology.org/formats/oboInOwl#ObsoleteClass,,,,,,,,,,,,,,a unit of measure is the quality of some material entity compared to which another quality is some multiple of.,"Smith, Ceusters, Ruttenberg, 2000 years of philosophy",,,,,,,,,,,,The length of a ruler.,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000103,,,,,,,,,,,,,,,,IAO:0000024,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,obsolete_unit of measure,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Alan Ruttenberg,,,
http://purl.obolibrary.org/obo/IAO_8000003,main release ontology module,,An ontology module that is intended to be the primary release product and the one consumed by the majority of tools.,FALSE,,,http://purl.obolibrary.org/obo/IAO_8000000,,,,,,,,,,,,,,An ontology module that is intended to be the primary release product and the one consumed by the majority of tools.,,,,,,,,,,TODO: Add logical axioms that state that a main release ontology module is derived from (directly or indirectly) an editors module,main release ontology module,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:8000003,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,main release ontology module,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/COB_0000035,completely executed planned process,,,FALSE,,,http://purl.obolibrary.org/obo/COB_0000082,,,,,,,,,,,,,,,,,,,,,,,,,completely executed planned process,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,COB:0000035,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,completely executed planned process,,,,,http://purl.obolibrary.org/obo/cob.owl,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000184,scatter plot,scattergraph,"A scatterplot is a graph which uses Cartesian coordinates to display values for two variables for a set of data. The data is displayed as a collection of points, each having the value of one variable determining the position on the horizontal axis and the value of the other variable determining the position on the vertical axis.",FALSE,,,http://purl.obolibrary.org/obo/IAO_0000038,,,,scattergraph,,,,,,,,,,"A scatterplot is a graph which uses Cartesian coordinates to display values for two variables for a set of data. The data is displayed as a collection of points, each having the value of one variable determining the position on the horizontal axis and the value of the other variable determining the position on the vertical axis.",WEB: http://en.wikipedia.org/wiki/Scatterplot,,,,,,,,,,scatter plot,,Comparison of gene expression values in two samples can be displayed in a scatter plot,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000122,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000184,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,scatter plot,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON:James Malone|PERSON:Chris Stoeckert|PERSON:Melanie Courtot,,,
http://purl.obolibrary.org/obo/IAO_0000140,setting datum,,A settings datum is a datum that denotes some configuration of an instrument.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000027,,,,,,,,,,,,,,A settings datum is a datum that denotes some configuration of an instrument.,,,,,,,,,,"Alan grouped these in placeholder for the moment. Name by analogy to measurement datum.|2/3/2009 Feedback from OBI

This should be a ""setting specification"". There is a question of whether it is information about a realizable or not.

Pro other specification are about realizables.
Cons sometimes specifies a quality which is not a realizable.",,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000123,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000140,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,setting datum,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000606,abbreviations section,nonstandard abbreviations and acronyms|abbreviation list|abbreviation and acronyms|abbreviations|abbreviations used|definitions for abbreviations|list of abbreviations used|abbreviations list|non-standard abbreviations|list of abbreviations|abbreviations and acronyms|nonstandard abbreviations,A part of a document where abbreviations and their long-forms used within the document are listed.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000314,,,,nonstandard abbreviations and acronyms|abbreviation list|abbreviation and acronyms|abbreviations|abbreviations used|definitions for abbreviations|list of abbreviations used|abbreviations list|non-standard abbreviations|list of abbreviations|abbreviations and acronyms|nonstandard abbreviations,,,,,,,,,,A part of a document where abbreviations and their long-forms used within the document are listed.,,,,,,,,,,,abbreviations section,,The section labelled 'abbreviations' in a typical scientific journal article.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000605,,,,,,,,,,,,,IAO:0000606,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,abbreviations section,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Bill Baumgartner,,https://github.com/information-artifact-ontology/IAO/issues/234|https://github.com/information-artifact-ontology/IAO/issues/183,
http://purl.obolibrary.org/obo/IAO_0000037,dot plot,,A dot plot is a report graph which is a graphical representation of data where each data point is represented by a single dot placed on coordinates corresponding to data point values in particular dimensions.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000038,,,,,,,,,,,,,,A dot plot is a report graph which is a graphical representation of data where each data point is represented by a single dot placed on coordinates corresponding to data point values in particular dimensions.,OBI_0000123|group:OBI,,,,,,,,,,dot plot,,Dot plot of SSC-H and FSC-H.,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000037,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,dot plot,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,person:Allyson Lister|person:Chris Stoeckert,,,
http://purl.obolibrary.org/obo/IAO_0000101,image,,"An image is an affine projection to a two dimensional surface, of measurements of some quality of an entity or entities repeated at regular intervals across a spatial range, where the measurements are represented as color and luminosity on the projected on surface.",FALSE,,,http://purl.obolibrary.org/obo/IAO_0000308,,,,,,,,,,,,,,"An image is an affine projection to a two dimensional surface, of measurements of some quality of an entity or entities repeated at regular intervals across a spatial range, where the measurements are represented as color and luminosity on the projected on surface.",OBI_0000030|group:OBI,,,,,,,,,,image,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000122,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000101,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,image,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,person:Alan Ruttenberg|person:Allyson|person:Chris Stoeckert,,,
http://purl.obolibrary.org/obo/IAO_0000704,measurement methods section,,A methods section that describes details of data assessment methods (data measurement).,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000317,,,,,,,,,,,,,,A methods section that describes details of data assessment methods (data measurement).,https://www.equator-network.org/reporting-guidelines/strobe/,,,,,,,,,,measurement methods section,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000120,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000704,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,measurement methods section,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,ONE ontology,,,,,,,,,,,,,,PERSON: Chen Yang|PERSON: Jie Zheng,,https://github.com/information-artifact-ontology/IAO/issues/235,
http://purl.obolibrary.org/obo/IAO_0000315,abstract,precis,A summary of the entire document that is substantially smaller than the document it summarizes.  It is about the document it summarizes.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000314,,,,precis,,,,,,,,,,A summary of the entire document that is substantially smaller than the document it summarizes.  It is about the document it summarizes.,,,,,,,,,,,abstract,,"The profusion of high-throughput instruments and the explosion of new results in the scientific literature, particularly in molecular biomedicine, is both a blessing and a curse to the bench researcher.   Even knowledgeable and experienced scientists can benefit from computational tools that help navigate this vast and rapidly evolving terrain. In this paper, we describe a novel computational approach to this challenge, a knowledge-based system that combines reading, reasoning and reporting methods to facilitate analysis of experimental data. Reading methods extract information from external resources, either by parsing structured data or biomedical language processing to extract information from unstructured data, and track knowledge provenance.  Reasoning methods enrich the knowledge that results from reading by, for example, noting two genes that are annotated to the same ontology term or database entry.  Reasoning is also used to combine all sources into a knowledge network that represents the integration of all sorts of relationships between a pair of genes, and to calculate a combined reliability score. Reporting methods combine the knowledge network with a congruent network constructed from experimental data and visualize the combined network in a tool that facilitates the knowledge-based analysis of that data.",,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000120,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000315,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,abstract,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000310,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Lawrence Hunter,,https://github.com/information-artifact-ontology/IAO/issues/234,
http://purl.obolibrary.org/obo/IAO_8000020,EL++ ontology module,,,FALSE,,,http://purl.obolibrary.org/obo/IAO_8000019,,,,,,,,,,,,,,,,,,,,,,,,,EL++ ontology module,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:8000020,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,EL++ ontology module,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000013,journal article,,A report that is published in a journal.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000088|http://purl.obolibrary.org/obo/IAO_0000311,,,,,,,,,,,,,,A report that is published in a journal.,group:OBI|OBI_0000159,,,,,,,,,,journal article,,"Examples are articles published in the journals, Nature and Science. The content can often be cited by reference to a paper based encoding, e.g.  Authors, Title of article, Journal name, date or year of publication, volume and page number.",,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000120,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000013,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,journal article,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000444,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Chris Stoeckert|PERSON: Alan Ruttenberg,,,
http://purl.obolibrary.org/obo/IAO_0000065,software interpreter,,A software interpreter is a software application that executes some specified input software.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000064,,,,,,,,,,,,,,A software interpreter is a software application that executes some specified input software.,OBI_0000199|group:OBI,,,,,,,,,"Do we care? Jennifer: Yes, there was a particular version of R that had a bug and it was fixed later. That would imply that we mean specific version of an interpreter. So an instance of this would be a particular version of the interpreter",software interpreter,,"R program, Perl interpreter, Java virtual machine",,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000120,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000065,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,software interpreter,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,person:Alan Ruttenberg|person:Chris Stoeckert,,,
http://purl.obolibrary.org/obo/IAO_8000005,import ontology module,import file,A subset ontology module that is intended to be imported from another ontology.,FALSE,,,http://purl.obolibrary.org/obo/IAO_8000006,,,,import file,,,,,,,,,,A subset ontology module that is intended to be imported from another ontology.,,,,,,,,,,TODO: add axioms that indicate this is the output of a module extraction process.,import ontology module,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:8000005,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,import ontology module,http://robot.obolibrary.org/extract,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/BFO_0000146,two-dimensional continuant fiat boundary,,,FALSE,,,http://purl.obolibrary.org/obo/BFO_0000140,,,,,,,TwoDimensionalContinuantFiatBoundary,2d-cf-boundary,,,,,,,,,,,,,,,,,,a two-dimensional continuant fiat boundary (surface) is a self-connected fiat surface whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [033-001]),,,,,,,(iff (TwoDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (TwoDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [033-001] ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000146,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/bfo.owl,two-dimensional continuant fiat boundary,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000079,density plot,,A density plot is a report graph which is a graphical representation of data where the tint of a particular pixel corresponds to some kind of function corresponding the the amount of data points relativelly with their distance from the the pixel.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000038,,,,,,,,,,,,,,A density plot is a report graph which is a graphical representation of data where the tint of a particular pixel corresponds to some kind of function corresponding the the amount of data points relativelly with their distance from the the pixel.,OBI_0000179|group:Flow Cytometry community,,,,,,,,,,density plot,,Density plot of SSC-H and FSC-H.,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000079,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,density plot,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,person:Allyson Lister|person:Chris Stoeckert,,,
http://purl.obolibrary.org/obo/IAO_0000429,email address,,,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000030,,,,,,,,,,,,,,,,,,,,,,,,"Alan Ruttenberg 1/3/2012 - Provisional id, see issue at https://github.com/information-artifact-ontology/IAO/issues/130&thanks=130&ts=1325636583",email address,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000123,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000429,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,email address,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Person:Chris Stoeckart|Person:Alan Ruttenberg,,,
http://purl.obolibrary.org/obo/IAO_0000316,introduction to a publication about an investigation,background|introduction|overview,A part of a publication about an investigation that is about the objective specification (why the investigation is being done),FALSE,,,http://purl.obolibrary.org/obo/IAO_0000314,,,,background|introduction|overview,,,,,,,,,,A part of a publication about an investigation that is about the objective specification (why the investigation is being done),,,,,,,,,,,introduction to a publication about an investigation,,Section labelled 'introduction' of a typical scientific journal article,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000120,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000316,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,introduction to a publication about an investigation,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000005,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Lawrence Hunter,,https://github.com/information-artifact-ontology/IAO/issues/234,
http://purl.obolibrary.org/obo/BFO_0000011,spatiotemporal region,,,FALSE,,,http://purl.obolibrary.org/obo/BFO_0000003,,,,,,,SpatiotemporalRegion,st-region,,,,,,,,,,,,,,,,,,A spatiotemporal region is an occurrent entity that is part of spacetime. (axiom label in BFO2 Reference: [095-001]),the spatiotemporal region occupied by a process of cellular meiosis.|the spatiotemporal region occupied by the development of a cancer tumor|the spatiotemporal region occupied by a human life,,,,,,(forall (r) (if (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion r r))) // axiom label in BFO2 CLIF: [107-002] |(forall (x t) (if (SpatioTemporalRegion x) (exists (y) (and (SpatialRegion y) (spatiallyProjectsOntoAt x y t))))) // axiom label in BFO2 CLIF: [099-001] |(forall (x y) (if (and (SpatioTemporalRegion x) (occurrentPartOf y x)) (SpatioTemporalRegion y))) // axiom label in BFO2 CLIF: [096-001] |(forall (x) (if (SpatioTemporalRegion x) (Occurrent x))) // axiom label in BFO2 CLIF: [095-001] |(forall (x) (if (SpatioTemporalRegion x) (exists (y) (and (TemporalRegion y) (temporallyProjectsOnto x y))))) // axiom label in BFO2 CLIF: [098-001] ,All parts of spatiotemporal regions are spatiotemporal regions. (axiom label in BFO2 Reference: [096-001])|Each spatiotemporal region projects_onto some temporal region. (axiom label in BFO2 Reference: [098-001])|Every spatiotemporal region s is such that s occupies_spatiotemporal_region s. (axiom label in BFO2 Reference: [107-002])|Every spatiotemporal region occupies_spatiotemporal_region itself.|Each spatiotemporal region at any time t projects_onto some spatial region at t. (axiom label in BFO2 Reference: [099-001]),,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000011,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/bfo.owl,spatiotemporal region,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000322,institution list,,A part of a document that has parts that are institution identifications associated with the authors of the document,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000314,,,,,,,,,,,,,,A part of a document that has parts that are institution identifications associated with the authors of the document,,,,,,,,,,,institution list,,The University of Colorado Denver School of Medicine and the University of Colorado Boulder.,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000120,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000303,,,,,,,,,,,,,IAO:0000322,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,institution list,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Lawrence Hunter,,,
http://purl.obolibrary.org/obo/IAO_0000096,source code module,,"A source code module is a directive information entity that specifies, using a programming language, some algorithm.",FALSE,,,http://purl.obolibrary.org/obo/IAO_0000033,,,,,,,,,,,,,,"A source code module is a directive information entity that specifies, using a programming language, some algorithm.",OBI_0000039|group:OBI,,,,,,,,,,source code module,,"The written source code that implements part of an algorithm. Test - if you know that it was written in a specific language, then it can be source code module. We mean here, roughly, the wording of a document such as a perl script.",,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000123,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000096,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,source code module,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,person:Alan Ruttenberg|person:Chris Stoeckert,,,
http://purl.obolibrary.org/obo/IAO_0000183,dendrogram,,"A dendrogram is a report graph which is a tree diagram
frequently used to illustrate the arrangement of the clusters produced by a
clustering algorithm.",FALSE,,,http://purl.obolibrary.org/obo/IAO_0000038,,,,,,,,,,,,,,"A dendrogram is a report graph which is a tree diagram
frequently used to illustrate the arrangement of the clusters produced by a
clustering algorithm.",WEB: http://en.wikipedia.org/wiki/Dendrogram,,,,,,,,,,dendrogram,,"Dendrograms are often used in computational biology to
illustrate the clustering of genes.",,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000122,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000183,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,dendrogram,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON:James Malone|PERSON:Chris Stoeckert|PERSON:Melanie Courtot,,,
http://purl.obolibrary.org/obo/IAO_0000326,supplementary material to a document,supplementary information|supplemental information|electronic supplementary materials|supplementary files|additional information|additional files|supplementary materials|supplementary material|supplementary data|supplemental material|additional file|appendix|supporting information|electronic supplementary material|supplemental data,A part of a document that is segregated from the rest of the document due to its size,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000314,,,,supplementary information|supplemental information|electronic supplementary materials|supplementary files|additional information|additional files|supplementary materials|supplementary material|supplementary data|supplemental material|additional file|appendix|supporting information|electronic supplementary material|supplemental data,,,,,,,,,,A part of a document that is segregated from the rest of the document due to its size,,,,,,,,,,,supplementary material to a document,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000120,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000326,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,supplementary material to a document,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Lawrence Hunter,,https://github.com/information-artifact-ontology/IAO/issues/234,
http://purl.obolibrary.org/obo/IAO_0000131,serial number,,"A serial number is an information content entity which is a unique sequence of characters borne by part of manufactured product or its packaging that is assigned to each individual in some class of products, and so can serve as a way to identify an individual product within the class. Serial numbers can be encoded in a variety of other information objects, such as bar codes, numerals, or patterns of dots.",FALSE,,,http://purl.obolibrary.org/obo/IAO_0000028,,,,,,,,,,,,,,"A serial number is an information content entity which is a unique sequence of characters borne by part of manufactured product or its packaging that is assigned to each individual in some class of products, and so can serve as a way to identify an individual product within the class. Serial numbers can be encoded in a variety of other information objects, such as bar codes, numerals, or patterns of dots.",,,,,,,,,,Note: during the call there was some confusion between serial number and model number. We agreed that it would be very helpful for all those terms to have example of usages - please add if you have any :-),serial number,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000123,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000131,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,serial number,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,GROUP: IAO,,,
http://purl.obolibrary.org/obo/IAO_0001000,data collection,data set,A data entity that consists of multiple data entities.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000027,,,,data set,,,,,,,,,,A data entity that consists of multiple data entities.,,,,,,,,,,,data collection,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0001000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,data collection,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Sebastian Duesing,,https://github.com/information-artifact-ontology/IAO/issues/283|https://github.com/obi-ontology/obi/issues/1877,
http://purl.obolibrary.org/obo/IAO_0000104,plan specification,,"A directive information entity with action specifications and objective specifications as parts, and that may be concretized as a realizable entity that, if realized, is realized in a process in which the bearer tries to achieve the objectives by taking the actions specified.",FALSE,,,http://purl.obolibrary.org/obo/IAO_0000033,,,,,,,,,,,,,,"A directive information entity with action specifications and objective specifications as parts, and that may be concretized as a realizable entity that, if realized, is realized in a process in which the bearer tries to achieve the objectives by taking the actions specified.",OBI Plan and Planned Process branch|OBI_0000344,,,,,,,,,"2022-01-16 Updated definition to that proposed by Clint Dowloand, IAO Issue 231.|2014-03-31: A plan specification can have other parts, such as conditional specifications.|2009-03-16: provenance: a term a plan was proposed for OBI (OBI_0000344) , edited by the PlanAndPlannedProcess branch. Original definition was "" a plan is a specification of a process that is realized by an actor to achieve the objective specified as part of the plan"". It has been subsequently moved to IAO where the objective for which the original term was defined was satisfied with the definitionof this, different, term.|Alternative previous definition: a plan is a set of instructions that specify how an objective should be achieved",plan specification,,PMID: 18323827.Nat Med. 2008 Mar;14(3):226.New plan proposed to help resolve conflicting medical advice.,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000122,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000005|http://purl.obolibrary.org/obo/IAO_0000007,,,,,,,,,,,,,IAO:0000104,,,,,,,,,,,,,,,,,,,,,,,,,,,,"2/3/2009 Comment from OBI review.

Action specification not well enough specified.
Conditional specification not well enough specified.
Question whether all plan specifications have objective specifications.

Request that IAO either clarify these or change definitions not to use them",,plan specification,https://github.com/information-artifact-ontology/IAO/issues/231#issuecomment-1010455131,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Alan Ruttenberg|Clint Dowland,,,
http://purl.obolibrary.org/obo/IAO_0000320,references section,reference|references|literature cited|reference list,A part of a document that has citations as parts,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000314,,,,reference|references|literature cited|reference list,,,,,,,,,,A part of a document that has citations as parts,,,,,,,,,,,references section,,"The list of citations found at the end of a scientific publication, grant proposal or patent application, sometimes called ""literature cited"" or ""bibliography""",,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000120,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000301,,,,,,,,,,,,,IAO:0000320,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,references section,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Lawrence Hunter,,https://github.com/information-artifact-ontology/IAO/issues/234,
http://purl.obolibrary.org/obo/IAO_0000035,obsolete_study interpretation,conclusion,"A study interpretation is a textual entity about the implications of a study result. Examples include discussion of whether a hypothesis is false, whether the study failed to address the hypothesis, and whether the study results have led to new hypotheses",TRUE,,,http://www.geneontology.org/formats/oboInOwl#ObsoleteClass,,,,conclusion,,,,,,,,,,"A study interpretation is a textual entity about the implications of a study result. Examples include discussion of whether a hypothesis is false, whether the study failed to address the hypothesis, and whether the study results have led to new hypotheses",OBI_0000005,,,,,,,,,"2009-03-16: work has been done on this term during during the OBI workshop winter 2009 and the current definition was considered acceptable for use in OBI. If there is a need to modify this definition please notify OBI.|2009-03-16: definition was ""A conclusion is a narrative object which can be published in a paper summerizing and interpreting a protocol application.""|The obsoleting of narrative object required a modest change in the definition of this term.  Circularity with ""interpretation... interprets"" has been removed, using ""about the implications"" instead.",obsolete_study interpretation,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000125,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000103,,,,,,,,,,,,,,,,IAO:0000035,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,obsolete_study interpretation,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Alan Ruttenberg|PERSON: Melanie Courtot|PERSON: Jennifer Fostel|Lawrence Hunter,,,
http://purl.obolibrary.org/obo/BFO_0000141,immaterial entity,,,FALSE,,,http://purl.obolibrary.org/obo/BFO_0000004,,,,,,,ImmaterialEntity,immaterial,,,,,,,,,,,,,,,,"BFO 2 Reference: Immaterial entities are divided into two subgroups:boundaries and sites, which bound, or are demarcated in relation, to material entities, and which can thus change location, shape and size and as their material hosts move or change shape or size (for example: your nasal passage; the hold of a ship; the boundary of Wales (which moves with the rotation of the Earth) [38, 7, 10",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000141,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/bfo.owl,immaterial entity,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000323,author contributions section,authors' contributions|author contributions|contributorship|contributions by the authors|authors' contribution|authors' roles,A part of a publication that is about the specific contributions of each author,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000314,,,,authors' contributions|author contributions|contributorship|contributions by the authors|authors' contribution|authors' roles,,,,,,,,,,A part of a publication that is about the specific contributions of each author,,,,,,,,,,,author contributions section,,"LH conceived of the hypothesis, designed the study and contributed to the writing of the manuscript.  KBC executed the experiments, analyzed the data, and contributed to the writing of the manuscript.",,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000120,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000323,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,author contributions section,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Lawrence Hunter,,https://github.com/information-artifact-ontology/IAO/issues/234,
http://purl.obolibrary.org/obo/IAO_0000186,photographic print,,A photographic print is a material entity upon which a photograph generically depends.,FALSE,,,http://purl.obolibrary.org/obo/BFO_0000040|http://purl.obolibrary.org/obo/IAO_0000178,,,,,,,,,,,,,,A photographic print is a material entity upon which a photograph generically depends.,,,,,,,,,,,photographic print,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000125,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000186,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,photographic print,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON:Alan Ruttenberg|PERSON:Melanie Courtot,,,
http://purl.obolibrary.org/obo/IAO_0000015,information carrier,,A quality of an information bearer that imparts the information content,FALSE,,,http://purl.obolibrary.org/obo/BFO_0000019,,,,,,,,,,,,,,A quality of an information bearer that imparts the information content,"Smith, Ceusters, Ruttenberg, 2000 years of philosophy",,,,,,,,,"2014-03-10: We are not certain that all information carriers are qualities. There was a discussion of dropping it.|12/15/09: There is a concern that some ways that carry information may be processes rather than qualities, such as in a 'delayed wave carrier'.",information carrier,,In the case of a printed paperback novel the physicality of the ink and of the paper form part of the information bearer. The qualities of appearing black and having a certain pattern for the ink and appearing white for the paper form part of the information carrier in this case.,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000125,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000015,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,information carrier,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Alan Ruttenberg,,,
http://purl.obolibrary.org/obo/IAO_0000643,statistical analysis textual entity,,A textual entity documenting statistical analysis tools and techniques employed.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000300,,,,,,,,,,,,,,A textual entity documenting statistical analysis tools and techniques employed.,,,,,,,,,,,statistical analysis textual entity,,"From Mondo et al. Cardiovasc J Afr. 2013 Mar; 24(2): 28–33. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3734881/):

Data were captured into EPI-DATA (version 3.1), cleaned and then exported to Stata version 10 for analysis. Continuous variables were summarised as mean (± standard deviation) and median (inter-quartile range), and presented in the tables. Categorical data were analysed using frequency and percentages, and results are presented in frequency tables and bar charts. Test of significance (p-value) was determined using the chi-square test. A p-value of less than 0.05 was considered significant.",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000643,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,statistical analysis textual entity,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Bill Baumgartner,,https://github.com/information-artifact-ontology/IAO/issues/183,
http://purl.obolibrary.org/obo/IAO_0000632,study limitations textual entity,,A textual entity addressing a shortcoming or bias of a study design or execution.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000300,,,,,,,,,,,,,,A textual entity addressing a shortcoming or bias of a study design or execution.,Author guidelines published by The Society for Academic Emergency Medicine. (http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1553-2712/homepage/ForAuthors.html),,,,,,,,,,study limitations textual entity,,"Excerpt from the Limitations section of Fermann et al 2015, Acad Emerg Med. 2015 Mar; 22(3): 299–307 (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4405051/). 

Owing to the nature of a post hoc study, any significant values must be interpreted with caution. In the current analysis, no multiple testing was conducted and p-values remain unadjusted. Moreover, a selection bias arising from the randomized open-label design of the original EINSTEIN PE study cannot be ruled out.",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000632,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,study limitations textual entity,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Bill Baumgartner,,https://github.com/information-artifact-ontology/IAO/issues/183,
http://purl.obolibrary.org/obo/IAO_0000097,obsolete_report table,,"A report table is a report display element consisting of a matrix of cells layed out in a grid, some set of which are filled with some information content",TRUE,,,http://www.geneontology.org/formats/oboInOwl#ObsoleteClass,,,,,,,,,,,,,,"A report table is a report display element consisting of a matrix of cells layed out in a grid, some set of which are filled with some information content",OBI_0000265|group:OBI,,,,,,,,,2009-08-10 Alan Ruttenberg: Larry Hunter suggests that this be obsoleted and replaced by 'textual entity table'. Alan restored as there are OBI dependencies and this merits further discussion,report table,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000002,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000103,,,,,,,,,,,,,,,,IAO:0000097,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,obsolete_report table,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,person:Alan Ruttenberg|person:Allyson Lister,,,
http://purl.obolibrary.org/obo/IAO_0000325,footnote,endnote|footnotes,A part of a document that is about a specific other part of the document.  Usually footnotes are spatially segregated from the rest of the document.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000314,,,,endnote|footnotes,,,,,,,,,,A part of a document that is about a specific other part of the document.  Usually footnotes are spatially segregated from the rest of the document.,,,,,,,,,,,footnote,,"The referent in the text is usually indicated by a special typographic character such as * or a superscripted number, which is also used to indicate the footnote that refers to that text.",,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000120,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000325,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,footnote,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000314,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Lawrence Hunter,,https://github.com/information-artifact-ontology/IAO/issues/234,
http://purl.obolibrary.org/obo/IAO_0000038,graph,,A diagram that presents one or more tuples of information by mapping those tuples in to a two dimensional space in a non arbitrary way.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000309,,,,,,,,,,,,,,A diagram that presents one or more tuples of information by mapping those tuples in to a two dimensional space in a non arbitrary way.,OBI_0000240|group:OBI,,,,,,,,,,graph,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000125,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000038,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,graph,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,person:Alan Ruttenberg|person:Allyson Lister|PERSON: Lawrence Hunter,,,
http://purl.obolibrary.org/obo/IAO_0000059,obsolete2_report figure,,"A report figure is a report display element that has some aspect of illustration, but may be a composite of figures, images, and other elements",TRUE,,,http://www.geneontology.org/formats/oboInOwl#ObsoleteClass,,,,,,,,,,,,,,"A report figure is a report display element that has some aspect of illustration, but may be a composite of figures, images, and other elements",OBI_0000027|group:OBI,,,,,,,,,"Replaced by defined version of figure|I prepended the 'report ' to make it clear that we mean parts of reports here. We may want a more generic version of 'figure', in which case this would become a defined class - figure and part_of some report",report figure,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000124,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000103,,,,,,,,,,,,,,,,IAO:0000059,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,obsolete2_report figure,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,person:Alan Ruttenberg|person:Allyson Lister,,,
http://purl.obolibrary.org/obo/IAO_0000612,availability textual entity,,"A textual entity expressing the location of a resource, e.g. software, or the manner in which a resource can be obtained.",FALSE,,,http://purl.obolibrary.org/obo/IAO_0000300,,,,,,,,,,,,,,"A textual entity expressing the location of a resource, e.g. software, or the manner in which a resource can be obtained.",,,,,,,,,,,availability textual entity,,"From Qi et al. BMC Bioinformatics. 2014; 15: 11. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3897912/):

Project home page:http://krux.googlecode.com",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000612,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,availability textual entity,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Bill Baumgartner,,https://github.com/information-artifact-ontology/IAO/issues/183,
http://purl.obolibrary.org/obo/IAO_0000025,programming language,,"A language in which source code is written that is intended to be executed/run by a software interpreter. Programming languages are ways to write instructions that specify what to do, and sometimes, how to do it.",FALSE,,,http://purl.obolibrary.org/obo/IAO_0000104,,,,,,,,,,,,,,"A language in which source code is written that is intended to be executed/run by a software interpreter. Programming languages are ways to write instructions that specify what to do, and sometimes, how to do it.",OBI_0000058|group:OBI,,,,,,,,,,programming language,,"R, Perl, Java",,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000120,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000025,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,programming language,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,person:Alan Ruttenberg|person:Chris Stoeckert,,,
http://purl.obolibrary.org/obo/IAO_0000409,denotator type,,A denotator type indicates how a term should be interpreted from an ontological perspective.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000102,,,,,,,,,,,,,,A denotator type indicates how a term should be interpreted from an ontological perspective.,"Barry Smith, Werner Ceusters",,,,,,,,,,denotator type,,"The Basic Formal Ontology ontology makes a distinction between Universals and defined classes, where the formal are ""natural kinds"" and the latter arbitrary collections of entities.",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000409,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,denotator type,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Alan Ruttenberg,,,
http://purl.obolibrary.org/obo/IAO_0000625,future directions section,future prospects|future perspectives|future research directions|future developments|future work|future considerations|future research|future studies|future directions|outlook|future outlook|future challenges|future plans,A part of a document detailing extensions of the described work that may be implemented at some future point in time.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000314,,,,future prospects|future perspectives|future research directions|future developments|future work|future considerations|future research|future studies|future directions|outlook|future outlook|future challenges|future plans,,,,,,,,,,A part of a document detailing extensions of the described work that may be implemented at some future point in time.,,,,,,,,,,,future directions section,,The section labelled 'future directions' in a typical scientific journal article.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000626,,,,,,,,,,,,,IAO:0000625,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,future directions section,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Bill Baumgartner,,https://github.com/information-artifact-ontology/IAO/issues/234|https://github.com/information-artifact-ontology/IAO/issues/183,
http://www.geneontology.org/formats/oboInOwl#ObsoleteClass,ObsoleteClass,,,FALSE,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,oboInOwl:ObsoleteClass,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000078,curation status specification,,The curation status of the term. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000102,,,,,,,,,,,,,,The curation status of the term. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value.,GROUP:OBI:<http://purl.obolibrary.org/obo/obi>|OBI_0000266,,,,,,,,,Better to represent curation as a process with parts and then relate labels to that process (in IAO meeting),curation status specification,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000125,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000078,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,curation status specification,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON:Bill Bug,,,
http://purl.obolibrary.org/obo/BFO_0000040,material entity,,An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time.,FALSE,,,http://purl.obolibrary.org/obo/BFO_0000004,,,,,,,MaterialEntity,material,,,,,,An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time.,,,,,,,,,,"BFO 2 Reference: Object, Fiat Object Part and Object Aggregate are not intended to be exhaustive of Material Entity. Users are invited to propose new subcategories of Material Entity.|BFO 2 Reference: Material entities (continuants) can preserve their identity even while gaining and losing material parts. Continuants are contrasted with occurrents, which unfold themselves in successive temporal parts or phases [60|BFO 2 Reference: ‘Matter’ is intended to encompass both mass and energy (we will address the ontological treatment of portions of energy in a later version of BFO). A portion of matter is anything that includes elementary particles among its proper or improper parts: quarks and leptons, including electrons, as the smallest particles thus far discovered; baryons (including protons and neutrons) at a higher level of granularity; atoms and molecules at still higher levels, forming the cells, organs, organisms and other material entities studied by biologists, the portions of rock studied by geologists, the fossils studied by paleontologists, and so on.Material entities are three-dimensional entities (entities extended in three spatial dimensions), as contrasted with the processes in which they participate, which are four-dimensional entities (entities extended also along the dimension of time).According to the FMA, material entities may have immaterial entities as parts – including the entities identified below as sites; for example the interior (or ‘lumen’) of your small intestine is a part of your body. BFO 2.0 embodies a decision to follow the FMA here.",,A material entity is an independent continuant that has some portion of matter as proper or improper continuant part. (axiom label in BFO2 Reference: [019-002]),an aggregate of human beings.|a forest fire|a tornado|a human being|an energy wave|the undetached arm of a human being|an epidemic|a flame|a photon|a sea wave|a puff of smoke|a hurricane,,,,,,(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt x y t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [021-002] |(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt y x t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [020-002] |(forall (x) (if (MaterialEntity x) (IndependentContinuant x))) // axiom label in BFO2 CLIF: [019-002] ,every entity of which a material entity is continuant part is also a material entity. (axiom label in BFO2 Reference: [021-002])|Every entity which has a material entity as continuant part is a material entity. (axiom label in BFO2 Reference: [020-002]),,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000040,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/bfo.owl,material entity,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000608,author information textual entity,,A textual entity expression information about an author of a document. This information may include biographical information and may discuss how the authors' professional experiences are relevant to the work described in the document.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000300,,,,,,,,,,,,,,A textual entity expression information about an author of a document. This information may include biographical information and may discuss how the authors' professional experiences are relevant to the work described in the document.,,,,,,,,,,,author information textual entity,,"From Takon. Ann Gen Psychiatry. 2011; 10: 25. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3204268/):

IT [the author] is the lead paediatrician for ADHD services in East Hertfordshire, UK, where she runs a weekly joint ADHD clinic with the Child and Adolescent psychiatrist and works within an ADHD specialist team. IT also sees children with other neurodisability issues who may have comorbid ADHD, where the presentation may be more complex and challenging to manage. IT has vast experience in managing children with complex ADHD. She has 18 years of experience in paediatrics and also has extensive experience in the use of psychopharmacologic agents in managing children with ADHD.",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000608,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,author information textual entity,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Bill Baumgartner,,https://github.com/information-artifact-ontology/IAO/issues/183,
http://purl.obolibrary.org/obo/IAO_0000330,copyright section,,A document part that describes  legal restrictions on making or distributing copies of the document,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000314,,,,,,,,,,,,,,A document part that describes  legal restrictions on making or distributing copies of the document,,,,,,,,,,,copyright section,,This work is licensed under a Creative Commons Attribution-Share Alike 3.0 United States License.,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000120,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000330,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,copyright section,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Lawrence Hunter,,,
http://purl.obolibrary.org/obo/BFO_0000038,one-dimensional temporal region,,,FALSE,,,http://purl.obolibrary.org/obo/BFO_0000008,,,,,,,OneDimensionalTemporalRegion,1d-t-region,,,,,,,,,,,,,,,,"BFO 2 Reference: A temporal interval is a special kind of one-dimensional temporal region, namely one that is self-connected (is without gaps or breaks).",,A one-dimensional temporal region is a temporal region that is extended. (axiom label in BFO2 Reference: [103-001]),the temporal region during which a process occurs.,,,,,,(forall (x) (if (OneDimensionalTemporalRegion x) (TemporalRegion x))) // axiom label in BFO2 CLIF: [103-001] ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000038,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/bfo.owl,one-dimensional temporal region,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000701,descriptive data section,,"A document part that lists and defines data variables, describes data characteristics (e.g. missing data information) and any assumptions and simplifications made.",FALSE,,,http://purl.obolibrary.org/obo/IAO_0000314,,,,,,,,,,,,,,"A document part that lists and defines data variables, describes data characteristics (e.g. missing data information) and any assumptions and simplifications made.",https://www.equator-network.org/reporting-guidelines/prisma/,,,,,,,,,,descriptive data section,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000120,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000701,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,descriptive data section,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,ONE ontology,,,,,,,,,,,,,,PERSON: Chen Yang|PERSON: Jie Zheng,,https://github.com/information-artifact-ontology/IAO/issues/235,
http://purl.obolibrary.org/obo/BFO_0000002,continuant,,"An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts.",FALSE,,,http://purl.obolibrary.org/obo/BFO_0000001,,,,,,,Continuant,continuant,,,,,,"An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts.",,,,,,,,,,"BFO 2 Reference: Continuant entities are entities which can be sliced to yield parts only along the spatial dimension, yielding for example the parts of your table which we call its legs, its top, its nails. ‘My desk stretches from the window to the door. It has spatial parts, and can be sliced (in space) in two. With respect to time, however, a thing is a continuant.’ [60, p. 240|Continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example, in an expansion involving bringing in some of Ceuster's other portions of reality, questions are raised as to whether universals are continuants",,"A continuant is an entity that persists, endures, or continues to exist through time while maintaining its identity. (axiom label in BFO2 Reference: [008-002])",,,,,,,(forall (x y) (if (and (Continuant x) (exists (t) (continuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [009-002] |(forall (x y) (if (and (Continuant x) (exists (t) (hasContinuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [126-001] |(forall (x) (if (Continuant x) (Entity x))) // axiom label in BFO2 CLIF: [008-002] |(forall (x) (if (Material Entity x) (exists (t) (and (TemporalRegion t) (existsAt x t))))) // axiom label in BFO2 CLIF: [011-002] ,"if b is a material entity, then there is some temporal interval (referred to below as a one-dimensional temporal region) during which b exists. (axiom label in BFO2 Reference: [011-002])|if b is a continuant and if, for some t, c has_continuant_part b at t, then c is a continuant. (axiom label in BFO2 Reference: [126-001])|if b is a continuant and if, for some t, cis continuant_part of b at t, then c is a continuant. (axiom label in BFO2 Reference: [009-002])",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/bfo.owl,continuant,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000308,figure,,An information content entity consisting of a two dimensional arrangement of information content entities such that the arrangement itself is about something.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000030,,,,,,,,,,,,,,An information content entity consisting of a two dimensional arrangement of information content entities such that the arrangement itself is about something.,,,,,,,,,,,figure,,"Any picture, diagram or table",,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000120,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000308,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,figure,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Lawrence Hunter,,,
http://purl.obolibrary.org/obo/IAO_8000018,obo basic subset ontology module,,"A subset ontology that is designed for basic applications to continue to make certain simplifying assumptions; many of these simplifying assumptions were based on the initial version of the Gene Ontology, and have become enshrined in many popular and useful tools such as term enrichment tools.

Examples of such assumptions include: traversing the ontology graph ignoring relationship types using a naive algorithm will not lead to cycles (i.e. the ontology is a DAG); every referenced term is declared in the ontology (i.e. there are no dangling clauses).

An ontology is OBO Basic if and only if it has the following characteristics:
DAG
Unidirectional
No Dangling Clauses
Fully Asserted
Fully Labeled
No equivalence axioms
Singly labeled edges
No qualifier lists
No disjointness axioms
No owl-axioms header
No imports",FALSE,,,http://purl.obolibrary.org/obo/IAO_8000017,,,,,,,,,,,,,,"A subset ontology that is designed for basic applications to continue to make certain simplifying assumptions; many of these simplifying assumptions were based on the initial version of the Gene Ontology, and have become enshrined in many popular and useful tools such as term enrichment tools.

Examples of such assumptions include: traversing the ontology graph ignoring relationship types using a naive algorithm will not lead to cycles (i.e. the ontology is a DAG); every referenced term is declared in the ontology (i.e. there are no dangling clauses).

An ontology is OBO Basic if and only if it has the following characteristics:
DAG
Unidirectional
No Dangling Clauses
Fully Asserted
Fully Labeled
No equivalence axioms
Singly labeled edges
No qualifier lists
No disjointness axioms
No owl-axioms header
No imports",,,,,,,,,,,obo basic subset ontology module,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:8000018,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,obo basic subset ontology module,http://owlcollab.github.io/oboformat/doc/obo-syntax.html#6.2,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000314,document part,,An information content entity that is part of a document.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000030,,,,,,,,,,,,,,An information content entity that is part of a document.,,,,,,,,,,,document part,,"An abstract, introduction, method or results section.",,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000120,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000310,IAO:0000314,http://purl.obolibrary.org/obo/IAO_0000310,,,,,,,,,,,,,,,,,,,,,,,,,,,,,document part,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Lawrence Hunter,,,
http://purl.obolibrary.org/obo/IAO_0000442,author role,,"A role inhering in a person or organization that is realized when the bearer participates in the work which is the basis of the document, in the writing of the document, and signs it with their name.",FALSE,,,http://purl.obolibrary.org/obo/BFO_0000023,,,,,,,,,,,,,,"A role inhering in a person or organization that is realized when the bearer participates in the work which is the basis of the document, in the writing of the document, and signs it with their name.",,,,,,,,,,,author role,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000125,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000442,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,author role,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Melanie Courtot|PERSON: Alan Ruttenberg,,,
http://purl.obolibrary.org/obo/IAO_0000576,obsolete_establishing a CRID registry,,"a planned process with the objective to establish a system that allows to refer to specific entities of a certain kind and store information about them, by establishing a CRID registry and plan specifications for the process of 1) assigning a CRID and 2) looking up a CRID.",TRUE,,,http://www.geneontology.org/formats/oboInOwl#ObsoleteClass,,,,,,,,,,,,,,"a planned process with the objective to establish a system that allows to refer to specific entities of a certain kind and store information about them, by establishing a CRID registry and plan specifications for the process of 1) assigning a CRID and 2) looking up a CRID.",,,,,,,,,,"MC, 20101124: deprecated following discussion at IAO call 20101124. Term was deemed not necessary - no use case for now.",,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000103,,,,,,,,,,,,,,,,IAO:0000576,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,obsolete_establishing a CRID registry,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000444,publishing process,,"A planned process of making information, such as literature, music, and software etc., available to the public for sale or for free.",FALSE,,,http://purl.obolibrary.org/obo/COB_0000035,,,,,,,,,,,,,,"A planned process of making information, such as literature, music, and software etc., available to the public for sale or for free.",https://en.wikipedia.org/wiki/Publishing,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000120,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000444,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,publishing process,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,VEuPathDB,,,,,,,,,,,,,,Person: Jie Zheng,,https://github.com/information-artifact-ontology/IAO/issues/232,
http://purl.obolibrary.org/obo/IAO_0000400,cartesian spatial coordinate datum,,"A cartesian spatial coordinate datum is a representation of a point in a spatial region, in which equal changes in the magnitude of a coordinate value denote length qualities with the same magnitude",FALSE,,,http://purl.obolibrary.org/obo/IAO_0000027,,,,,,,,,,,,AR notes: We need to discuss whether it should include site.,,"A cartesian spatial coordinate datum is a representation of a point in a spatial region, in which equal changes in the magnitude of a coordinate value denote length qualities with the same magnitude",,,http://purl.obolibrary.org/obo/BFO_0000018,,,,,,,2009-08-18 Alan Ruttenberg - question to BFO list about whether the BFO sense of the lower dimensional regions is that they are always part of actual space (the three dimensional sort) http://groups.google.com/group/bfo-discuss/browse_thread/thread/9d04e717e39fb617,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000120,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000400,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,cartesian spatial coordinate datum,http://groups.google.com/group/bfo-discuss/browse_thread/thread/9d04e717e39fb617,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Alan Ruttenberg,,,
http://purl.obolibrary.org/obo/APOLLO_SV_00000008,software development,,A planned process that has specified output a software product and that involves the creation of source code.,FALSE,,,http://purl.obolibrary.org/obo/COB_0000035,,,,,,,,,,,,,,A planned process that has specified output a software product and that involves the creation of source code.,http://en.wikipedia.org/wiki/Software_development,,,,,,,,,,,A planned process resulting in a software product involving the creation of source code.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,APOLLO_SV:00000008,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,software development,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,William R. Hogan|Mathias Brochhausen,,,
http://purl.obolibrary.org/obo/IAO_0020016,given name,first name,"A personal name that specifies and differentiates between members of a group of individuals, especially in a family, all of whose members usually share the same family name (surname). A given name is purposefully given, usually by a child's parents at or near birth, in contrast to an inherited one such as a family name",FALSE,,,http://purl.obolibrary.org/obo/IAO_0020015,,,,first name,,,,,,,,,,"A personal name that specifies and differentiates between members of a group of individuals, especially in a family, all of whose members usually share the same family name (surname). A given name is purposefully given, usually by a child's parents at or near birth, in contrast to an inherited one such as a family name",http://en.wikipedia.org/wiki/Given_name,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0020016,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,given name,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Justin Whorton|Mathias Brochhausen,,https://github.com/information-artifact-ontology/IAO/issues/237,
http://purl.obolibrary.org/obo/IAO_0000306,table,,"A textual entity that contains a two-dimensional arrangement of texts repeated at regular intervals across a spatial range, such that the spatial relationships among the constituent texts expresses propositions",FALSE,,,http://purl.obolibrary.org/obo/IAO_0000300,,,,,,,,,,,,,,"A textual entity that contains a two-dimensional arrangement of texts repeated at regular intervals across a spatial range, such that the spatial relationships among the constituent texts expresses propositions",,,,,,,,,,,table,,"| T     F
--+-----
T   | T     F
F   |  F    F",,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000125,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000306,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,table,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Lawrence Hunter,,,
http://purl.obolibrary.org/obo/BFO_0000031,generically dependent continuant,,b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001]),FALSE,,,http://purl.obolibrary.org/obo/BFO_0000002,,,,,,,GenericallyDependentContinuant,gdc,,,,,,b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001]),,,,,,,,,,,,,"the pdf file on your laptop, the pdf file that is a copy thereof on my laptop|the sequence of this protein molecule; the sequence that is a copy thereof in that protein molecule.|The entries in your database are patterns instantiated as quality instances in your hard drive. The database itself is an aggregate of such patterns. When you create the database you create a particular instance of the generically dependent continuant type database. Each entry in the database is an instance of the generically dependent continuant type IAO: information content entity.",,,,,,(iff (GenericallyDependentContinuant a) (and (Continuant a) (exists (b t) (genericallyDependsOnAt a b t)))) // axiom label in BFO2 CLIF: [074-001] ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000031,,,,,,,,,,,,,,,,,,,,,,,,,,,,A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time.,http://purl.obolibrary.org/obo/bfo.owl,generically dependent continuant,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000610,author summary textual entity,,"A textual entity, distinct from the abstract, that describes the significance and broader context of the document content. The author summary is often written in a non-technical manner and is aimed at both scientists and non-scientist readers, e.g as described in the article submission guidelines for PLoS Genetics (http://journals.plos.org/plosgenetics/s/submission-guidelines).",FALSE,,,http://purl.obolibrary.org/obo/IAO_0000300,,,,,,,,,,,,,,"A textual entity, distinct from the abstract, that describes the significance and broader context of the document content. The author summary is often written in a non-technical manner and is aimed at both scientists and non-scientist readers, e.g as described in the article submission guidelines for PLoS Genetics (http://journals.plos.org/plosgenetics/s/submission-guidelines).",Article submission guidelines for PLoS Genetics (http://journals.plos.org/plosgenetics/s/submission-guidelines).,,,,,,,,,,author summary textual entity,,"From Pendse et al. BMC Genomics. 2013; 14: 136. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3608171/):


The search for genetic risk factors for common human diseases often relies on the use of linkage and association studies to establish correlation between genomic markers and disease risk. These studies require additional functional evaluation of candidate genes, including their possible interaction with diet and environment. The number of candidate genes is typically large and the development of appropriate genetic tools in mammalian systems is slow. By contrast, large-scale genetic screens, using widely available genetic tools, are routinely conducted in the fruit fly Drosophila melanogaster. In this study, we used Drosophila to screen candidate genes identified in human genome-wide scans as associated with risk of metabolic abnormalities such as type 2 diabetes. We show that a number of human candidate genes have fly orthologs that play an important role in Drosophila tolerance to high dietary sucrose. We further explored some of the specific metabolic abnormalities that can result when these genes’ activities are reduced in flies, focusing on a gene we call dHHEX (CG7056), the fly ortholog of human HHEX.",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000610,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,author summary textual entity,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Bill Baumgartner,,https://github.com/information-artifact-ontology/IAO/issues/183,
http://purl.obolibrary.org/obo/IAO_0000225,obsolescence reason specification,,The reason for which a term has been deprecated. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000102,,,,,,,,,,,,,,The reason for which a term has been deprecated. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value.,,,,,,,,,,"The creation of this class has been inspired in part by Werner Ceusters' paper, Applying evolutionary terminology auditing to the Gene Ontology.",obsolescence reason specification,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000125,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000225,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,obsolescence reason specification,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Melanie Courtot|PERSON: Alan Ruttenberg,,,
http://purl.obolibrary.org/obo/IAO_0000303,institutional identification,,A textual entity intended to identify a particular institution,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000300,,,,,,,,,,,,,,A textual entity intended to identify a particular institution,,,,,,,,,,,institutional identification,,University of Colorado Denver School of Medicine,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000125,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000303,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,institutional identification,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Lawrence Hunter,,,
http://purl.obolibrary.org/obo/IAO_0000327,table of contents,,A table that relates document parts to specific locations in a document (usually page numbers).  This is also a document part (subsumption there should be inferred).,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000306,,,,,,,,,,,,,,A table that relates document parts to specific locations in a document (usually page numbers).  This is also a document part (subsumption there should be inferred).,,,,,,,,,,,table of contents,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000125,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000327,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,table of contents,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Lawrence Hunter,,,
http://purl.obolibrary.org/obo/IAO_0000091,obsolete_report element,,"A report element is a narrative object in which information is presented and consumed by a human being, and is part of a report. Examples of report elements are figure (dot plot), table, text portion (may include a movie or audio clip on a web page).",TRUE,,,http://www.geneontology.org/formats/oboInOwl#ObsoleteClass,,,,,,,,,,,,,,"A report element is a narrative object in which information is presented and consumed by a human being, and is part of a report. Examples of report elements are figure (dot plot), table, text portion (may include a movie or audio clip on a web page).",OBI_0000001|GROUP:OBI,,,,,,,,,"2009-03-16: was report display element with definition: A report display element is a narrative object that is part of a report. Report display elements are set off from the textual parts of a report and are typically given a label(e.g. Figure 2) which is used to refer to the element from the text. Typically the 2d layout is part of the identity of such elements.|2009-03-16: work has been done on this term during during the OBI workshop winter 2009 and the current definition was considered acceptable for use in OBI. If there is a need to modify this definition please notify OBI.|2009-08-10 Alan Ruttenberg: Larry Hunter suggests that this be obsoleted and replaced by 'textual entity' and 'figure'. Alan restored as there are OBI dependencies and this merits further discussion|Replaced by textual entity and figure|2009-03-16: needs some more work (clarify relations).|There will be some issue here about whether these are defined classes. As intended these are meant to denote the parts of the report that are not textual but are typically boxed and set within the text, labelled with some identifier, and referred to in the text",report element,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000120,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000103,,,,,,,,,,,,,,,,IAO:0000091,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,obsolete_report element,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Melanie Courtot|PERSON: Allyson Lister|PERSON: Alan Ruttenberg,,,
http://purl.obolibrary.org/obo/IAO_0000034,time trigger,,,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000001,,,,,,,,,,,,,,,,,,,,,,,,,time trigger,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000124,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000034,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,time trigger,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PlanAndPlannedProcess Branch,,,
http://purl.obolibrary.org/obo/IAO_0000590,written name,,A textual entity that denotes a particular in reality.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000300,,,,,,,,,,,,"The qualifier ""written"" is to set it apart from spoken names.  Also, note the restrictions to particulars.  We are not naming universals.   We could however, be naming, attributive collections which are particulars, so ""All people located in the boundaries of the city of Little Rock, AR on June 18, 2011 at 9:50a CDT"" would be a name.",,A textual entity that denotes a particular in reality.,https://github.com/information-artifact-ontology/IAO/issues/114,,,,,,,,,,written name,,"""The Eiffel Tower""|""Bill Clinton""|""United States of America""",,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000125,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000590,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,written name,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Bill Hogan,,,
http://purl.obolibrary.org/obo/IAO_0000618,consent section,consent,A part of a document about the consent process that was used to enroll patients in a study.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000314,,,,consent,,,,,,,,,,A part of a document about the consent process that was used to enroll patients in a study.,,,,,,,,,,,consent section,,"The section labelled 'consent' in a typical scientific journal article, e.g. Shiba et al. Acta Neuropathol Commun. 2013; 1: 45. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3893467/)",,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000619,,,,,,,,,,,,,IAO:0000618,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,consent section,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Bill Baumgartner,,https://github.com/information-artifact-ontology/IAO/issues/183,
http://purl.obolibrary.org/obo/APOLLO_SV_00000033,counting,,The planned process of finding the number of elements in a finite set of objects.,FALSE,,,http://purl.obolibrary.org/obo/COB_0000035,,,,,,,,,,,,,,The planned process of finding the number of elements in a finite set of objects.,http://en.wikipedia.org/wiki/Counting,,,,,,,,,,,The planned process of finding the number of elements in a finite set of objects.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,APOLLO_SV:00000033,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,counting,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Mathias Brochhausen,,,
http://purl.obolibrary.org/obo/APOLLO_SV_00000032,count,,A measurement datum that is the output of counting.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000027|http://purl.obolibrary.org/obo/IAO_0000109,,,,,,,,,,,,,,A measurement datum that is the output of counting.,,,,,,,,,,,,A measurement datum that is the output of counting.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,APOLLO_SV:00000032,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,count,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Mathias Brochhausen,,,
http://purl.obolibrary.org/obo/IAO_0000592,software module,,A software module is software composed of a collection of software methods.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000010,,,,,,,,,,,,,,A software module is software composed of a collection of software methods.,https://github.com/information-artifact-ontology/IAO/issues/80,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000123,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000592,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,software module,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Michel Dumontier|PERSON: Melanei Courtot,,,
http://purl.obolibrary.org/obo/IAO_8000001,base ontology module,,"An ontology module that comprises only of asserted axioms local to the ontology, excludes import directives, and excludes axioms or declarations from external ontologies.",FALSE,,,http://purl.obolibrary.org/obo/IAO_8000000,,,,,,,,,,,,,,"An ontology module that comprises only of asserted axioms local to the ontology, excludes import directives, and excludes axioms or declarations from external ontologies.",,,,,,,,,,,base ontology module,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:8000001,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,base ontology module,https://github.com/INCATools/ontology-starter-kit/issues/50,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000627,genome announcement section,genome announcement,A document part announcing the publication of a novel draft genome sequence.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000314,,,,genome announcement,,,,,,,,,,A document part announcing the publication of a novel draft genome sequence.,,,,,,,,,,,genome announcement section,,"The section labelled 'genome announcement' in a typical scientific journal article, e.g. in Kim et al. J Bacteriol. 2011 Oct; 193(19): 5537. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3187466/)",,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000628,,,,,,,,,,,,,IAO:0000627,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,genome announcement section,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Bill Baumgartner,,https://github.com/information-artifact-ontology/IAO/issues/183,
http://purl.obolibrary.org/obo/IAO_0000141,obsolete_digital quality,,,TRUE,,,http://www.geneontology.org/formats/oboInOwl#ObsoleteClass,,,,,,,,,,,,,,,,,,,,,,,,"Need to rework digital entity. Digital quality was suggested by Barry.|3/22/2009 Alan Ruttenberg, obsoleted per http://groups.google.com/group/information-ontology/browse_thread/thread/789ad4b7708d5cf4",,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000103,,,,,,,,,,,,,,,,IAO:0000141,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,obsolete_digital quality,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000626,future directions textual entity,,A textual entity expressing ideas regarding future work relevant to work described in a document that could be done.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000300,,,,,,,,,,,,,,A textual entity expressing ideas regarding future work relevant to work described in a document that could be done.,,,,,,,,,,,future directions textual entity,,"Excerpt from Wang and Li. Acta Pharmacol Sin. 2016 Jan; 37(1): 25–33. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4722976/):

In the future, several questions will need to be resolved regarding the physiological assembly of KCNQ channels and their functional implications in complex neural circuits. First, we still lack sufficiently selective inhibitors and activators among the KCNQ family members.",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000626,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,future directions textual entity,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Bill Baumgartner,,https://github.com/information-artifact-ontology/IAO/issues/183,
http://purl.obolibrary.org/obo/IAO_8000007,curation subset ontology module,,A subset ontology that is intended as a whitelist for curators using the ontology. Such a subset will exclude classes that curators should not use for curation.,FALSE,,,http://purl.obolibrary.org/obo/IAO_8000006,,,,,,,,,,,,,,A subset ontology that is intended as a whitelist for curators using the ontology. Such a subset will exclude classes that curators should not use for curation.,,,,,,,,,,,curation subset ontology module,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:8000007,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,curation subset ontology module,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000613,case report section,case presentation|case report,A part of a document about the medical history of a specific patient as it relates to the topic of the document.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000314,,,,case presentation|case report,,,,,,,,,,A part of a document about the medical history of a specific patient as it relates to the topic of the document.,,,,,,,,,,,case report section,,"The section labelled 'case report' in a typical scientific journal article, e.g. in Taglia et al. Acta Myol. 2012 Dec; 31(3): 201–203. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3631801/)",,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000614,,,,,,,,,,,,,IAO:0000613,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,case report section,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Bill Baumgartner,,https://github.com/information-artifact-ontology/IAO/issues/183,
http://purl.obolibrary.org/obo/IAO_0000178,material information bearer,,A material entity in which a concretization of an information content entity inheres.,FALSE,,,http://purl.obolibrary.org/obo/BFO_0000040,,,,,,,,,,,,,,A material entity in which a concretization of an information content entity inheres.,,,,,,,,,,,material information bearer,,"a brain|A page of a paperback novel with writing on it. The paper itself is a material information bearer, the pattern of ink is the information carrier.|a hard drive",,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000122,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000178,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,material information bearer,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,GROUP: IAO,,,
http://purl.obolibrary.org/obo/IAO_8000004,bridge ontology module,,"An ontology module that consists entirely of axioms that connect or bridge two distinct ontology modules. For example, the Uberon-to-ZFA bridge module.",FALSE,,,http://purl.obolibrary.org/obo/IAO_8000000,,,,,,,,,,,,,,"An ontology module that consists entirely of axioms that connect or bridge two distinct ontology modules. For example, the Uberon-to-ZFA bridge module.",,,,,,,,,,,bridge ontology module,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:8000004,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,bridge ontology module,https://github.com/obophenotype/uberon/wiki/inter-anatomy-ontology-bridge-ontologies,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000318,results section,results,A part of a publication about an investigation that is about a study design execution,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000314,,,,results,,,,,,,,,,A part of a publication about an investigation that is about a study design execution,,,,,,,,,,,results section,,The section labelled 'results' in a typical scientific journal article,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000120,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000318,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,results section,,,,,,,,http://purl.obolibrary.org/obo/OBI_0000471,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Lawrence Hunter,,,
http://purl.obolibrary.org/obo/IAO_8000002,editors ontology module,source ontology module,"An ontology module that is intended to be directly edited, typically managed in source control, and typically not intended for direct consumption by end-users.",FALSE,,,http://purl.obolibrary.org/obo/IAO_8000000,,,,source ontology module,,,,,,,,,,"An ontology module that is intended to be directly edited, typically managed in source control, and typically not intended for direct consumption by end-users.",,,,,,,,,,,editors ontology module,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:8000002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,editors ontology module,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000328,table of figures,,A table that relates figures in a document to specific locations in that document (usually page numbers).  This is also a document part (subsumption there should be inferred).,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000306,,,,,,,,,,,,,,A table that relates figures in a document to specific locations in that document (usually page numbers).  This is also a document part (subsumption there should be inferred).,,,,,,,,,,,table of figures,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000125,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000328,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,table of figures,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Lawrence Hunter,,,
http://purl.obolibrary.org/obo/IAO_0000144,conclusion textual entity,,"A textual entity that expresses the results of reasoning about a problem, for instance as typically found towards the end of scientific papers.",FALSE,,,http://purl.obolibrary.org/obo/IAO_0000300,,,,,,,,,,,,,,"A textual entity that expresses the results of reasoning about a problem, for instance as typically found towards the end of scientific papers.",,,,,,,,,,2009/10/23 Alan Ruttenberg: We need to work on the definition still|2009/09/28 Alan Ruttenberg. Fucoidan-use-case,conclusion textual entity,,"that fucoidan has a small statistically significant effect on AT3 level but no useful clinical effect as in-vivo anticoagulant, a paraphrase of part of the last paragraph of the discussion section of the paper 'Pilot clinical study to evaluate the anticoagulant activity of fucoidan', by Lowenthal et. al.PMID:19696660",,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000120,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000144,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,conclusion textual entity,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Person:Alan Ruttenberg,,,
http://purl.obolibrary.org/obo/IAO_0000628,genome announcement textual entity,,"A textual entity that describes the generation and public release of a novel, draft genome sequence.",FALSE,,,http://purl.obolibrary.org/obo/IAO_0000300,,,,,,,,,,,,,,"A textual entity that describes the generation and public release of a novel, draft genome sequence.",,,,,,,,,,,genome announcement textual entity,,"Excerpt from Kim et al. J Bacteriol. 2011 Oct; 193(19): 5537. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3187466/):

Here we report the genome sequence of Lactobacillus malefermentans KCTC 3548, which we obtained using a whole-genome shotgun strategy (4) with Roche 454 GS (FLX Titanium) pyrosequencing (257,559 reads totaling ∼89.8 Mb; ∼45-fold coverage of the genome) at the Genome Resource Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB).",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000628,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,genome announcement textual entity,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Bill Baumgartner,,https://github.com/information-artifact-ontology/IAO/issues/183,
http://purl.obolibrary.org/obo/IAO_0000031,integer numeral,,A numeral that denotes an integer,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000029,,,,,,,,,,,,,,A numeral that denotes an integer,,,,,,,,,,,integer numeral,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000123,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000031,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,integer numeral,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Jonathan Rees,,,
http://purl.obolibrary.org/obo/BFO_0000035,process boundary,,p is a process boundary =Def. p is a temporal part of a process & p has no proper temporal parts. (axiom label in BFO2 Reference: [084-001]),FALSE,,,http://purl.obolibrary.org/obo/BFO_0000003,,,,,,,ProcessBoundary,p-boundary,,,,,,p is a process boundary =Def. p is a temporal part of a process & p has no proper temporal parts. (axiom label in BFO2 Reference: [084-001]),,,,,,,,,,,,,the boundary between the 2nd and 3rd year of your life.,,,,,,(forall (x) (if (ProcessBoundary x) (exists (y) (and (ZeroDimensionalTemporalRegion y) (occupiesTemporalRegion x y))))) // axiom label in BFO2 CLIF: [085-002] |(iff (ProcessBoundary a) (exists (p) (and (Process p) (temporalPartOf a p) (not (exists (b) (properTemporalPartOf b a)))))) // axiom label in BFO2 CLIF: [084-001] ,Every process boundary occupies_temporal_region a zero-dimensional temporal region. (axiom label in BFO2 Reference: [085-002]),,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000035,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/bfo.owl,process boundary,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OBI_0200000,data transformation,,A completely executed planned process that produces output data from input data.,FALSE,,,http://purl.obolibrary.org/obo/COB_0000035,,,,,,,,,,,,,,A completely executed planned process that produces output data from input data.,,,,,,,,,,,data transformation,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OBI:0200000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,data transformation,,,,,http://purl.obolibrary.org/obo/obi.owl,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_8000000,ontology module,ontology file,,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000102,,,,ontology file,,,,,,,,"This class and it's subclasses are applied to OWL ontologies. Using an rdf:type triple will result in problems with OWL-DL. I propose that dcterms:type is instead used to connect an ontology URI with a class from this hierarchy. The class hierarchy is not disjoint, so multiple assertions can be made about a single ontology.",,,,,,,,,,,,"I have placed this under 'data about an ontology part', but this can be discussed. I think this is OK if 'part' is interpreted reflexively, as an ontology module is the whole ontology rather than part of it.",ontology module,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:8000000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,ontology module,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000098,data format specification,,"A data format specification is the information content borne by the document published defining the specification.
Example: The ISO document specifying what encompasses an XML document; The instructions in a XSD file",FALSE,,,http://purl.obolibrary.org/obo/IAO_0000033,,,,,,,,,,,,,,"A data format specification is the information content borne by the document published defining the specification.
Example: The ISO document specifying what encompasses an XML document; The instructions in a XSD file",OBI branch derived|OBI_0000187,,,,,,,,,"2009-03-16: provenance: term imported from OBI_0000187, which had original definition ""A data format specification is a plan which organizes
information. Example: The ISO document specifying what encompasses an
XML document; The instructions in a XSD file""",data format specification,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000123,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000098,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,data format specification,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PlanAndPlannedProcess Branch|PERSON: Alan Ruttenberg,,https://github.com/information-artifact-ontology/IAO/issues/172,
http://purl.obolibrary.org/obo/IAO_0000582,time stamped measurement datum,,,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000109,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000123,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000582,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,time stamped measurement datum,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000622,figures section,figures,A part of a document that contains one or more figures.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000314,,,,figures,,,,,,,,,,A part of a document that contains one or more figures.,,,,,,,,,,,figures section,,The section labelled 'figures' in a typical scientific journal article.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000308,,,,,,,,,,,,,IAO:0000622,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,figures section,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Bill Baumgartner,,https://github.com/information-artifact-ontology/IAO/issues/183,
http://purl.obolibrary.org/obo/IAO_0000706,study bias section,,A study limitations section that describes systematic error introduced into sampling or testing by selecting or encouraging one outcome or answer over others.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000631,,,,,,,,,,,,,,A study limitations section that describes systematic error introduced into sampling or testing by selecting or encouraging one outcome or answer over others.,DOI: 10.1097/PRS.0b013e3181de24bc,,,,,,,,,,study bias section,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000120,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000706,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,study bias section,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,ONE ontology,,,,,,,,,,,,,,PERSON: Chen Yang|PERSON: Jie Zheng,,https://github.com/information-artifact-ontology/IAO/issues/235,
http://purl.obolibrary.org/obo/IAO_0000703,research participants section,,"A document part that describes human subject(s) that participated in a study (e.g. inclusion & exclusion criteria, recruitment methods, reasons for non-participation, grouping and randomisation, methods of follow-up, etc.).",FALSE,,,http://purl.obolibrary.org/obo/IAO_0000314,,,,,,,,,,,,,,"A document part that describes human subject(s) that participated in a study (e.g. inclusion & exclusion criteria, recruitment methods, reasons for non-participation, grouping and randomisation, methods of follow-up, etc.).",https://www.equator-network.org/reporting-guidelines/strobe-nut/|https://www.equator-network.org/reporting-guidelines/prisma/|https://www.equator-network.org/reporting-guidelines/consort/,,,,,,,,,,research participants section,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000120,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000703,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,research participants section,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,ONE ontology,,,,,,,,,,,,,,PERSON: Chen Yang|PERSON: Jie Zheng,,https://github.com/information-artifact-ontology/IAO/issues/235,
http://purl.obolibrary.org/obo/BFO_0000145,relational quality,,"b is a relational quality = Def. for some independent continuants c, d and for some time t: b quality_of c at t & b quality_of d at t. (axiom label in BFO2 Reference: [057-001])",FALSE,,,http://purl.obolibrary.org/obo/BFO_0000019,,,,,,,RelationalQuality,r-quality,,,,,,"b is a relational quality = Def. for some independent continuants c, d and for some time t: b quality_of c at t & b quality_of d at t. (axiom label in BFO2 Reference: [057-001])",,,,,,,,,,,,,"a marriage bond, an instance of requited love, an obligation between one person and another.|John’s role of husband to Mary is dependent on Mary’s role of wife to John, and both are dependent on the object aggregate comprising John and Mary as member parts joined together through the relational quality of being married.",,,,,,(iff (RelationalQuality a) (exists (b c t) (and (IndependentContinuant b) (IndependentContinuant c) (qualityOfAt a b t) (qualityOfAt a c t)))) // axiom label in BFO2 CLIF: [057-001] ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000145,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/bfo.owl,relational quality,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000012,obsolete2_digital entity,,A digital entity is an information entity which is a collection of bits that can be interpreted by a computer. Two digital entities are the same if they are bitwise identical.,TRUE,,,http://www.geneontology.org/formats/oboInOwl#ObsoleteClass,,,,,,,,,,,,,,A digital entity is an information entity which is a collection of bits that can be interpreted by a computer. Two digital entities are the same if they are bitwise identical.,OBI_0000261|group:OBI,,,,,,,,,"3/22/2009 Alan Ruttenberg, obsoleted per http://groups.google.com/group/information-ontology/browse_thread/thread/789ad4b7708d5cf4

Superclass was 'digitial quality'",obsolete_digital entity,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000103,,,,,,,,,,,,,,,,IAO:0000012,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,obsolete2_digital entity,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,person:Chris Stoeckert,,,
http://purl.obolibrary.org/obo/IAO_0000128,obsolete_identifier,,,TRUE,,,http://www.geneontology.org/formats/oboInOwl#ObsoleteClass,,,,,,,,,,,,,,,,,,,,,,,,"_identifier is a container under information content entity for collecting types of terms to indicate a specific instance or clas of what was used or participated in an investigation. Identifiers are borne by a product or its packaging, and can be encoded in a variety of other information objects, such as bar codes, numerals, or patterns of dots.

Note: everybody agreed that identifier is probably a too general term. We however felt that it would be appropriate to group ""identifiying"" terms under some kind of umbrella. We therefore propose to use _identifier for that purpose. As per OBI conventions, the _ prefixing identifier indicates that this is a helper class and shouldn't be considered as final.",,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000121,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000226,,,,,,,,,,,,,,,,IAO:0000128,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,obsolete_identifier,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000003,measurement unit label,,A measurement unit label is as a label that is part of a scalar measurement datum and denotes a unit of measure.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000009,,,,,,,,,,,,,,A measurement unit label is as a label that is part of a scalar measurement datum and denotes a unit of measure.,,,,,,,,,,"2009-03-16: review of this term done during during the OBI workshop winter 2009 and the current definition was considered acceptable for use in OBI. If there is a need to modify this definition please notify OBI.|2009-03-16: provenance: a term measurement unit was
proposed for OBI (OBI_0000176) , edited by Chris Stoeckert and
Cristian Cocos, and subsequently moved to IAO where the objective for
which the original term was defined was satisfied with the definition
of this, different, term.",measurement unit label,,"Examples of measurement unit labels are liters, inches, weight per volume.",,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000125,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000003,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,measurement unit label,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Melanie Courtot|PERSON: Alan Ruttenberg,,,
http://purl.obolibrary.org/obo/BFO_0000020,specifically dependent continuant,,b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003]),FALSE,,,http://purl.obolibrary.org/obo/BFO_0000002,,,,,,,SpecificallyDependentContinuant,sdc,,,,,,b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003]),,,,,,,,,,"Specifically dependent continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. We're not sure what else will develop here, but for example there are questions such as what are promises, obligation, etc.",,,"the mutual dependence of proton donors and acceptors in chemical reactions [79|the pink color of a medium rare piece of grilled filet mignon at its center|the mutual dependence of the role predator and the role prey as played by two organisms in a given interaction|of relational dependent continuants (multiple bearers): John’s love for Mary, the ownership relation between John and this statue, the relation of authority between John and his subordinates.|the shape of this hole.|the role of being a doctor|the function of this heart: to pump blood|the smell of this portion of mozzarella|of one-sided specifically dependent continuants: the mass of this tomato|the disposition of this fish to decay|Reciprocal specifically dependent continuants: the function of this key to open this lock and the mutually dependent disposition of this lock: to be opened by this key",,,,,,(iff (SpecificallyDependentContinuant a) (and (Continuant a) (forall (t) (if (existsAt a t) (exists (b) (and (IndependentContinuant b) (not (SpatialRegion b)) (specificallyDependsOnAt a b t))))))) // axiom label in BFO2 CLIF: [050-003] ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000020,,,,,,,,,,,,,,,,,,,,,,,,,,,,A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same.,http://purl.obolibrary.org/obo/bfo.owl,specifically dependent continuant,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_8000016,taxonomic bridge ontology module,,,FALSE,,,http://purl.obolibrary.org/obo/IAO_8000004,,,,,,,,,,,,,,,,,,,,,,,,,taxonomic bridge ontology module,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:8000016,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,taxonomic bridge ontology module,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000179,histogram,,"A histogram is a report graph which is a statistical description of a
distribution in terms of occurrence frequencies of different event classes.",FALSE,,,http://purl.obolibrary.org/obo/IAO_0000038,,,,,,,,,,,,,,"A histogram is a report graph which is a statistical description of a
distribution in terms of occurrence frequencies of different event classes.",GROUP:OBI,,,,,,,,,,histogram,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000122,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000179,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,histogram,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON:James Malone|PERSON:Chris Stoeckert|PERSON:Melanie Courtot,,,
http://purl.obolibrary.org/obo/IAO_0000631,study limitations section,limitations|study limitations,A part of a document about biases or short comings related to the study design and execution.,FALSE,,,http://purl.obolibrary.org/obo/IAO_0000314,,,,limitations|study limitations,,,,,,,,,,A part of a document about biases or short comings related to the study design and execution.,Author guidelines published by The Society for Academic Emergency Medicine. (http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1553-2712/homepage/ForAuthors.html),,,,,,,,,,study limitations section,,The section labelled 'limitations' in a typical scientific journal article.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000632,,,,,,,,,,,,,IAO:0000631,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,study limitations section,,,,,,,,http://purl.obolibrary.org/obo/OBI_0500000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,PERSON: Bill Baumgartner,,https://github.com/information-artifact-ontology/IAO/issues/183,
http://purl.obolibrary.org/obo/IAO_0000646,postal code,,"An identifier that denotes some postal delivery route, some aggregate of postal delivery routes or a geographical region and was created for the purpose of sorting and delivering mail.",FALSE,,,http://purl.obolibrary.org/obo/IAO_0020000,,,,,,,,,,,,,,"An identifier that denotes some postal delivery route, some aggregate of postal delivery routes or a geographical region and was created for the purpose of sorting and delivering mail.",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000646,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,postal code,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Mathias Brochhausen,,,
