LHO
type: Ontology
version IRI: http://www.purl.org/decide/LiveStockHealthOnto/LHO/1.4
term editor: Saba Noor
contributor: Saba Noor Miel Hostens
has exact synonym: LHO
comment: LHO, guided by OBO Foundry principles, integrates domain knowledge and data for livestock health. The ontology covers farms, samples, geolocation, breed, diagnostic tests, and pathogen identification, including bacteria like Histophilus somni, Mannheimia haemolytica, Pasteurella multocida, Bovine coronavirus, bacterial mycoplasma, and aerobic culture results in cattle. For pigs, it includes FarmType, age, weight, and pathogens like PRRS, SI and M_Hyponemoniea. In poultry, LHO incorporates FarmType, with specific pathogen names such as Infectious Bronchitis (IB), providing a concise overview of health aspects across livestock species.
comment: https://www.purl.org/decide/LiveStockHealthOnto/LHO
see also: An extension of DECIDE ontology https://bioportal.bioontology.org/ontologies/DECIDE?p=summary
prior version: V1.1
prior version: V1.3
version info: V1.4
pref lable: LiveStock HealthOntology

example of usage
type: AnnotationProperty
comment: A string that provides a usage example of a class, property, or other ontology element to help users understand how it is applied.

term editor
type: AnnotationProperty
example of usage: For example, in the context of cattle, breeds can be categorized as meat, dairy, or mixed breeds, each breed for specific agricultural or culinary purposes. Similarly, in the context of poultry, breeds can be categorized as meat breeds or egg-laying breeds. Pigs are also breed for meat production. The 'Breed' class serves as a foundational concept for classifying and organizing various animal breeds within the ontology.
comment: The person primarily responsible for the creation or curation of a given ontology term.

alternative term
type: AnnotationProperty
comment: A term or phrase that may be used as a synonym or alternate label for a given ontology entity, especially useful for searching and term matching.

definition source
type: AnnotationProperty
comment: A reference (such as a publication, URL, or ontology) that identifies where the definition of a term originated from.

imported from
type: AnnotationProperty
comment: An annotation indicating the source ontology or resource from which a given term was imported.

contributor
type: AnnotationProperty
comment: Person who contribute to the ontology

hasExactSynonym
type: AnnotationProperty
comment: Exact synonyms are words that have completely identical or nearly identical meanings in given contexts

imported from
type: AnnotationProperty
comment: resource from where ontology is imported

version
type: AnnotationProperty
comment: version of ontology
sub property of: comment

PrefLable
type: AnnotationProperty
comment: PrefLable
domain: Disease

hasPrevalence
type: ObjectProperty
domain: Location
comment: Links a region to pathogen prevalence.

hasBRDCase
type: ObjectProperty
domain: Location
range: BRDCasesObservation
comment: Links a region to BRD case records.

hasTimePeriod
type: ObjectProperty
domain: Location
domain: DiseaseOutBreak
range: Quarter
comment: Links a region to a specific time period.

hasHouse
type: ObjectProperty
domain: Farm
domain: PoultryFarmIdentification
range: House
comment: Links a farm to one or more houses within it.

hasFlock
type: ObjectProperty
domain: House
range: Flock
comment: Links a house to one or more flocks within it.

hasSample
type: ObjectProperty
domain: Flock
range: Sample
comment: Links a flock to its associated poultry sample.

hasAssociatedFlock
type: ObjectProperty
property chain axiom: hasPoultryFarmIdentification
property chain axiom: hasHouse
property chain axiom: hasFlock
comment: infer farm identification for particular poultry house

hasCycleTime
type: ObjectProperty
domain: LivestockProductionSatges
range: ProductionCycleTime
comment: Links a production stage to a concept representing the time duration of that stage.

causedBy
type: ObjectProperty
domain: Disease
range: Pathogen
comment: Disease cause link to pathogen

hasActualBiomass
type: ObjectProperty
domain: Sample
comment: Object property linked Salmon sample with Actual Biomass property

hasWaterType
type: ObjectProperty
comment: object property that link Salmon sample with water type for eaxmple Freshwater, Seawater, BrackishWater

hasMortality
type: ObjectProperty
domain: Sample
comment: Object property that link Salmon sample with Salmon mortality per sample?

hasLocalAuthority
type: ObjectProperty
domain: Sample
range: LocalAuthority
comment: Object property that link physical region or location

hasPoultryFarmIdentification
type: ObjectProperty
domain: FarmIdentification
range: PoultryFarmIdentification
comment: Object property that links a unique identifier specific to poultry farms, used for traceability and health monitoring purposes.

affectsSpecies
type: ObjectProperty
comment: Links a pathogen, breed, sample type, or country to the species it applies to. Used to filter species-specific categories in a multi-species ontology.

causesDisease
type: ObjectProperty
domain: Pathogen
range: Disease
comment: Links a pathogen to the type of disease it causes. Used to classify pathogens into Viral or Bacterial groups for graph construction.

hasAge
type: ObjectProperty
domain: Sample
range: Age
comment: link a sample to age Unit

hasBreed
type: ObjectProperty
domain: Sample
range: Breed
comment: Link a sample to specific animal breed.

hasCountry
type: ObjectProperty
domain: Sample
range: Country
comment: Sample belong to which country

hasDate
type: ObjectProperty
domain: Sample
range: Date
comment: animal sample date

hasDiagnosticTest
type: ObjectProperty
domain: Sample
range: DiagnosticTest
comment: Links a sample to a test performed.

hasEventType
type: ObjectProperty
domain: Sample
range: EventType
comment: link sample to event at which it perform

hasFarmIdentification
type: ObjectProperty
domain: Class
  union of: Farm
  union of: Sample
range: FarmIdentification
comment: Links a sample or a farm to unique farm ID

hasFarmType
type: ObjectProperty
domain: Sample
range: FarmType
comment: link sample to the farm type

hasGeographicNeighbor
type: ObjectProperty
type: SymmetricProperty
domain: Country
range: Country
comment: Symmetric property indicating two countries share a geographic land border. Used to create geographic adjacency edges in the knowledge graph.

hasLabReference
type: ObjectProperty
domain: Sample
range: LabReference
comment: Link Lab reference,for identification and tracking within a laboratory or data system if Farm Identification is not available

hasPathogen
type: ObjectProperty
domain: Sample
range: Pathogen
comment: link sample to specific pathogen

hasProvince
type: ObjectProperty
domain: Sample
range: Province
comment: link sample to region

hasSampleNumber
type: ObjectProperty
domain: Sample
range: SampleNumber
comment: link sample to its unique sample Number if available

hasSampleResult
type: ObjectProperty
domain: Sample
range: SampleResult
comment: Link Sample to result postive 1 or negative 0

hasSampleType
type: ObjectProperty
domain: Sample
range: SampleType
comment: Associates a Sample with a SampleType indicating the kind of material collected, such as blood, tissue, feces, or water.

hasTimeUnit
type: ObjectProperty
domain: Age
range: TimeUnit
comment: Linking Animal age with TimeUnit
comment: Time unit like Months, days, minutes etc...

hasWeight
type: ObjectProperty
domain: Sample
range: Weight
comment: link animal sample weight

hasWeightUnit
type: ObjectProperty
domain: Weight
range: WeightUnit
comment: A unit of measurement used to express the weight or mass of an animal, feed, or product. Common examples include kilogram (kg), gram (g), and tonne (t).

hasProvincePathogenPrevalence
type: DatatypeProperty
domain: Province
range: float
comment: data type vlaue Represents the prevalence rate of a pathogen in a province.

hasProvinceNoOfBRD
type: DatatypeProperty
range: int
comment: Count of BRD cases in a province.

hasCountryPathogenPrevalence
type: DatatypeProperty
domain: Country
range: float
comment: percentage % of cases in a country.

hasCountryNoOfBRD
type: DatatypeProperty
range: int
comment: Count of positive BRD cases in a country.

hasQuarterPathogenPrevalence
type: DatatypeProperty
range: float
comment: % of cases in a quarter.

hasQuarterNoOfBRD
type: DatatypeProperty
range: int
comment: Count of BRD cases in Quarter

result
type: DatatypeProperty
domain: SampleResult
range: string
comment: A data property that tells whether a sample tested positive (1) or negative (0).

date
type: DatatypeProperty
domain: Sample
range: string
comment: Date when the sample was collected.

hasSampleNumber
type: DatatypeProperty
range: string
comment: Unique ID for each sample.

hasFlockID
type: DatatypeProperty
domain: Flock
range: string
comment: Unique identifier for a flock.

hasVetID
type: DatatypeProperty
domain: Flock
range: string
comment: Identifier for the veterinarian responsible for the flock.

hasHatchDate
type: DatatypeProperty
domain: Flock
range: string
comment: data type for hatching

hasRemovalDate
type: DatatypeProperty
domain: Flock
range: string
comment: Date when the flock was removed from the house or farm.

hasGrowthCurve
type: DatatypeProperty
domain: Flock
range: string
comment: Records the growth pattern of the flock over time.

hasThinned
type: DatatypeProperty
domain: Flock
range: string
comment: A data property that indicates whether the flock has undergone thinning (removal of some birds before full harvest).

houseNumber
type: DatatypeProperty
domain: House
range: string
comment: Define data property of house

mortality
type: DatatypeProperty
range: integer
comment: data type property that represent mortality in KG

breed
type: DatatypeProperty
domain: Sample
range: string
comment: data type that Represents breed like beef, mixed, Veal, suckler

country
type: DatatypeProperty
domain: Country
range: string
comment: Data type Country naming type string

pathogen
type: DatatypeProperty
domain: Pathogen
range: string
comment: A data property that discribes a name of the pathogen in animal sample

BovineRespiratorySyncytialVirus
type: Class
subclass of: Pathogen
imported from: https://agrovoc.fao.org/browse/agrovoc/en/
has exact synonym: BRSV
comment: Bovine Respiratory Syncytial Virus (BRSV) is a major cause of respiratory disease in cattle, characterized by coughing, nasal discharge, and increased respiratory rate.

Lepeophtheirus salmonis
type: Class
subclass of: Pathogen
comment: Lepeophtheirus salmonis (Sea Lice): A parasitic copepod that infests salmon, causing significant issues in aquaculture

MycoplasmaBovis
type: Class
subclass of: Pathogen
imported from: https://agrovoc.fao.org/browse/agrovoc/en/
has exact synonym: MB
comment: Mycoplasma bovis is a bacterial pathogen that primarily affects cattle, causing respiratory disease, arthritis, mastitis, and other systemic infections.

MycoplasmaHyopneumoniae
type: Class
subclass of: Pathogen
has exact synonym: M.Hyopneumoniae
has exact synonym: M_Hyopneumoniae
comment: Mycoplasma hyopneumoniae is a bacterium causing swine enzootic pneumonia, a respiratory disease in pigs, characterized by coughing and impaired respiratory function.

InfectiousSalmonAnemiaVirus
type: Class
subclass of: Pathogen
imported from: ISAV
imported from: https://agrovoc.fao.org/browse/agrovoc/en/
has exact synonym: Infectious salmon anaemia
comment: Causes Infectious Salmon Anemia (ISA), a serious viral disease in Atlantic salmon

HistophilusSomnus
type: Class
subclass of: Pathogen
imported from: https://agrovoc.fao.org/browse/agrovoc/en/
has exact synonym: HS
comment: Haemophilus somnus classified as Histophilus somni, is a Gram-negative bacterium that can cause respiratory and systemic infections in cattle and other domestic and farm animals

PasteurellaHaemolytica
type: Class
subclass of: Pathogen
imported from: https://agrovoc.fao.org/browse/agrovoc/en/
has exact synonym: PH
comment: Pasteurella haemolytica is a Gram-negative bacterium associated with respiratory infections, particularly in cattle, causing bovine respiratory disease complex (BRDC) or shipping fever.

PorcineReproductiveAndRespiratorySyndromeVirus
type: Class
subclass of: Pathogen
has exact synonym: PRRS
comment: Porcine Reproductive and Respiratory Syndrome (PRRS) is a viral disease in pigs, causing reproductive failure in sows and respiratory symptoms in pigs of all ages.

Poultry
type: Class
subclass of: Species
imported from: https://agrovoc.fao.org/browse/agrovoc/en/page/c_6145
comment: All domesticated birds used for the production of meat or eggs for consumption, for the production of other commercial products, for restocking, supplies of game, or for breeding these categories of birds.
pref lable: poultry

SwineInfluenzaVirus
type: Class
subclass of: Pathogen
has exact synonym: SI
comment: Swine Influenza is a respiratory viral infection in pigs, characterized by coughing, sneezing, and fever, with potential transmission to humans.

Pig
type: Class
subclass of: Species
imported from: https://aims.fao.org/aos/agrovoc/c_7555.html
comment: The pig (Sus domesticus), often called swine, hog, or domestic pig
pref lable: pig

Disease
type: Class
subclass of: LivestockHealthOntology
imported from: http://opendata.inra.fr/AHOL/
is defined by: Damage on the health. The modifications of an organism defending itself against an infection or another damager factor. Perturbation of the animal's normal functions.

Infectious Disease
type: Class
subclass of: Disease
imported from: https://bioportal.bioontology.org/ontologies/AHOL
comment: Infectious disease class includes diseases caused by pathogens such as viruses, bacteria, fungi, or parasites that can spread between animals, humans, or both

Viral Disease
type: Class
subclass of: Infectious Disease
type: NamedIndividual
imported from: https://bioportal.bioontology.org/ontologies/AHOL
comment: Viral disease is an illness caused by a virus, where the virus invades living cells to reproduce, often leading to symptoms like fever, cough, or organ damage.

Bacterial Disease
type: Class
subclass of: Infectious Disease
type: NamedIndividual
comment: Bacterial disease is an illness caused by pathogenic bacteria, such as Mannheimia haemolytica, Pasteurella multocida, Histophilus somni, or Mycoplasma bovis in cattle.

BovineCoronaVirus
type: Class
subclass of: Pathogen
imported from: http://opendata.inra.fr/AnimalDiseasesOnto/
has exact synonym: BCV
comment: Bovine coronavirus primarily causes enteric (intestinal) infections in calves, leading to diarrhea.

InfectiousBrochistVirus
type: Class
subclass of: Pathogen
imported from: http://opendata.inra.fr/AnimalDiseasesOnto
has exact synonym: IB
comment: Infectious bronchitis is a highly contagious viral respiratory disease in chickens, characterized by respiratory distress and egg production drops.

MannheimiaHaemolytica
type: Class
subclass of: Pathogen
imported from: http://opendata.inra.fr/AnimalDiseasesOnto
has exact synonym: MH
comment: Mannheimia haemolytica is a bacterium associated with bovine respiratory disease in cattle, causing pneumonia and respiratory distress.

PasteurellaMultocida
type: Class
subclass of: Pathogen
imported from: https://opendata.inra.fr/AnimalDiseasesOnto/page/Ando
comment: Pasteurella multocida is a bacterial pathogen in cattle associated with respiratory infections, causing pneumonia and other respiratory symptoms.

measurement datum
type: Class
subclass of: LivestockHealthOntology
imported from: obo:IAO_0000119 "http://purl.obolibrary.org/obo/iao.owl" .
comment: An information content entity that specifies how a realizable entity is concretized, and that is not concretized in the specification itself."

Location
type: Class
subclass of: LivestockHealthOntology
comment: Location refers to a specific place or area where an event, object, or entity exists or occurs.

Country
type: Class
subclass of: Location
has exact synonym: COUNTRY; Country
imported from: http://purl.obolibrary.org/obo/ncit.owl

Cattle
type: Class
subclass of: Species
comment: (domestic cattle)

Event
type: Class
subclass of: LivestockHealthOntology
imported from: https://bioportal.bioontology.org/ontologies/DECIDE
comment: A class representing any occurrence or activity related to aquaculture or livestock management, such as disease outbreaks, treatments, movements, or inspections.

EventType
type: Class
subclass of: LivestockHealthOntology
imported from: https://bioportal.bioontology.org/ontologies/DECIDE
comment: It refer to different types of events related to livestock or farming. For example, "slaughter" could be one event type, and "birth," "vaccination," or "disease outbreak" could be other event types.

Farm
type: Class
subclass of: LivestockHealthOntology
imported from: https://bioportal.bioontology.org/ontologies/DECIDE
comment: A farm is an agricultural or aquacultural establishment where crops are cultivated, terrestrial livestock and/or aquatic species (such as fish or shellfish) are raised for food production or other commercial, research, or conservation purposes.

Measurement
type: Class
subclass of: LivestockHealthOntology
imported from: https://bioportal.bioontology.org/ontologies/DECIDE
comment: A record of an observed or measured value related to a specific characteristic (such as weight, age, or temperature) of an animal, population, environment, or system, applicable to both terrestrial livestock and aquaculture species

MeasurementType
type: Class
subclass of: LivestockHealthOntology
imported from: https://bioportal.bioontology.org/ontologies/DECIDE
comment: A classification of measurement, such as weight or age

Pathogen
type: Class
subclass of: LivestockHealthOntology
imported from: https://bioportal.bioontology.org/ontologies/DECIDE
comment: A pathogen is a microorganism, such as a bacterium or virus, that causes disease in its host, be it plants, animals, or humans.

ProductionCycleTime
type: Class
subclass of: LivestockHealthOntology
imported from: https://bioportal.bioontology.org/ontologies/DECIDE
comment: ProductionCycleTime refers to the duration of a specific production stage or the entire production process in aquaculture or livestock farming. It is used to describe the time span from the beginning to the end of a defined stage (e.g., nursery, finishing) or the complete cycle.

Sample
type: Class
subclass of: LivestockHealthOntology
comment: A base class for Animal Samples
comment: A sample, such as a CattleSample, PigSample, or PoultrySample, refers to a specimen collected from respective animals for diagnostic or research purposes, often involving testing for diseases or analyzing biological parameters.

SampleResult
type: Class
subclass of: LivestockHealthOntology
imported from: https://bioportal.bioontology.org/ontologies/DECIDE
comment: SampleResult represents the outcome or findings derived from analyzing a specimen, providing valuable information about the health or characteristics of the sampled subject, whether it be cattle, pig, poultry, or another source.

SampleType
type: Class
subclass of: LivestockHealthOntology
imported from: https://bioportal.bioontology.org/ontologies/DECIDE
comment: SampleType
comment: SampleType describes the kind of material or source from which a sample is collected for analysis. Examples include blood, tissue, feces, milk, water, feed, or environmental swabs. It is used to classify samples according to their origin and is essential for interpreting diagnostic and surveillance data.

SpeciesGroup
type: Class
equivalent class: Species
imported from: https://bioportal.bioontology.org/ontologies/DECIDE
comment: SpeciesGroup represents a group of animals belonging to the same species or production category (e.g., Atlantic salmon, broiler chickens, weaned piglets, dairy cattle). It is used to describe the target population involved in events such as sampling, treatment, or observation.

Unit
type: Class
subclass of: LivestockHealthOntology
definition source: https://bioportal.bioontology.org/ontologies/DECIDE
comment: The class representing a unit of measurement or denomination. Instances of this class may include various units such as length units, weight units, time units, etc. It serves as a general category for expressing quantitative values in a standardized manner across different domains.

Veterinarian
type: Class
subclass of: LivestockHealthOntology
imported from: https://bioportal.bioontology.org/ontologies/DECIDE
comment: A Veterinarian is a qualified and licensed professional responsible for the health and welfare of animals. Veterinarians perform clinical examinations, diagnose diseases, prescribe treatments, and provide guidance on prevention, vaccination, and biosecurity in livestock and aquaculture settings.

ActualBiomass
type: Class
subclass of: LivestockHealthOntology
comment: Represents the total measured live body weight of the sampled population in kilograms at a specific timepoint.

Age
type: Class
subclass of: MeasurementType
comment: A measurement Type

Autopsy
type: Class
subclass of: SampleType
type: NamedIndividual
type: SampleType
affectsSpecies: Cattle
comment: An autopsy sample refers to tissues or specimens collected during a post-mortem examination, conducted to investigate the cause of death or study pathological conditions in animals or humans.

BAL
type: Class
subclass of: SampleType
type: NamedIndividual
type: SampleType
affectsSpecies: Cattle
comment: Bronchoalveolar Lavage is a fluid sample collected from the lungs by flushing and retrieving liquid through a bronchoscope to examine respiratory infections.

Beef
type: Class
subclass of: Breed
disjoint with: Egglaying
comment: Breeds can be categorized as meat, beef

BirthEvent
type: Class
subclass of: EventType
definition source: Birth event refers to the occurrence of a living being coming into the world.

Blood
type: Class
subclass of: SampleType
comment: Blood is a SampleType. A blood sample is a specimen collected from an organism, typically through venipuncture, and is used for diagnostic or research purposes, providing insights into the health and physiological parameters of the individual.

Breed
type: Class
subclass of: LivestockHealthOntology
comment: Breeds are used to categorize and classify animals based on specific characteristics, traits, and purposes.

Breeder
type: Class
subclass of: PoultryProductionStages
comment: Birds (hens and roosters) are raised for reproduction to produce fertilized eggs for hatching.

Breeding
type: Class
subclass of: PigProductionStages
comment: Pid production Breeding stage in pigs involves reproductive activities where a sow (mature female), boar (male pig), and gilt (young female yet to farrow but ready to breed) participate in the mating process.

BreedingFarm
type: Class
subclass of: FarmType
comment: A Breedingfarm" may focus on breeding and raising animals for specific traits.

Broiler
type: Class
subclass of: PoultryProductionStages
type: NamedIndividual
type: PoultryProductionStages
comment: Chicks raised specifically for meat production grow rapidly and are typically processed within 6–8 weeks.

House
type: Class
subclass of: LivestockHealthOntology
comment: Represents a housing unit within a farm where a poultry flock is kept.

Quarter
type: Class
subclass of: Unit
comment: A time-based unit representing one-fourth of a year, typically spanning three months.

BRDCasesObservation
type: Class
subclass of: LivestockHealthOntology
comment: Represents the number of BRD cases in a region/time.

DiseaseOutBreak
type: Class
subclass of: EventType
comment: Represents disease outbreaks linked to regions, time, and pathogens.

BRDCaseOutbreak
type: Class
subclass of: DiseaseOutBreak
comment: Bovine respiratory disease +ev cases in animal sample at particualr time and region

Flock
type: Class
subclass of: LivestockHealthOntology
comment: Represents a group of poultry birds in a specific house at a farm, forming a distinct management unit.

PoultryFarmIdentification
type: Class
subclass of: FarmIdentification
comment: A unique identifier specific to poultry farms, used for traceability and health monitoring purposes.

Prevelance
type: Class
subclass of: LivestockHealthOntology
comment: Prevalence refers to the proportion of a population that has a specific characteristic or condition at a given time. It is often used in public health to indicate how widespread a disease is within a population.

Mixed
type: Class
subclass of: SampleType
type: NamedIndividual
type: Breed
affectsSpecies: Cattle
comment: Mixed breed cattle are crossbred animals that do not belong to a single pure breed category. May include dairy-beef crosses or other hybrid breeding combinations

CattleProductionStages
type: Class
subclass of: LivestockProductionSatges
comment: Livestock production stages are the sequential phases in the life and management of farm cattles

CattleSample
type: Class
subclass of: Sample
subclass of: Restriction
  on property: hasPathogen
  some values from: BovineRespiratorySyncytialVirus
subclass of: Restriction
  on property: hasPathogen
  some values from: MycoplasmaBovis
subclass of: Restriction
  on property: hasPathogen
  some values from: MycoplasmaHyopneumoniae
subclass of: Restriction
  on property: hasPathogen
  some values from: HistophilusSomnus
subclass of: Restriction
  on property: hasPathogen
  some values from: PasteurellaHaemolytica
subclass of: Restriction
  on property: hasPathogen
  some values from: BovineCoronaVirus
subclass of: Restriction
  on property: hasPathogen
  some values from: MannheimiaHaemolytica
subclass of: Restriction
  on property: hasPathogen
  some values from: PasteurellaMultocida
comment: CattleSamples are the "n" number of observations for Cattle

Dairy
type: Class
subclass of: Breed
type: NamedIndividual
type: Breed
affectsSpecies: Cattle
comment: Dairy breed refers to a type of livestock, for example cows, that is specifically raised for milk production

Date
type: Class
subclass of: LivestockHealthOntology
comment: Date

Day
type: Class
subclass of: TimeUnit
comment: A unit of time equal to 24 hours, used for short-term measurements or daily records

DiagnosticTest
type: Class
subclass of: LivestockHealthOntology
comment: Diagnostic tests, such as PCR and culture, are utilized in pigs, poultry, and cattle to identify and analyze pathogens, aiding in disease detection and management.

Egglaying
type: Class
subclass of: Breed
comment: Egg-laying breed refers to a type of poultry, for example chickens, that is specifically raised for producing a high number of eggs.

FarmIdentification
type: Class
subclass of: LivestockHealthOntology
comment: Farm identification involves assigning a unique code or name to a specific agricultural property, facilitating tracking and management for regulatory, organizational, or administrative purposes.

FarmType
type: Class
subclass of: LivestockHealthOntology
comment: FarmType categorizes the nature or focus of a farm, specifying whether it is oriented towards crop cultivation, livestock raising, or a combination of both, providing a classification for agricultural purposes.

Feces
type: Class
subclass of: SampleType
comment: A sample of solid waste (stool) used to detect gastrointestinal pathogens, parasites, or digestive disorders.

FeedLot
type: Class
subclass of: FarmType
comment: A Feedlot typically emphasizes the finishing stage of livestock for meat production,

Finishing
type: Class
subclass of: PigProductionStages
subclass of: Restriction
  on property: hasBreed
  all values from: Beef
type: NamedIndividual
type: PigProductionStages
comment: Finishing stage in pigs is the final growth phase, typically from 10 to 25 weeks of age, where pigs grow from about 20–25 kg to 100–110+ kg before market.

Fluid
type: Class
subclass of: SampleType
comment: A general term for bodily fluids (e.g., urine, pleural fluid, synovial fluid) used to test for infections or other abnormalities.

Growing
type: Class
subclass of: CattleProductionStages
subclass of: Restriction
  on property: hasBreed
  all values from: Beef
comment: the final stage of cattle production

H1N1
type: Class
subclass of: SwineInfluenzaVirus
comment: H1N1 is a subtype of the influenza a virus, and it has been responsible for influenza outbreaks in both humans and pigs. In the context of livestock health ontology or any ontology dealing with diseases, H1N1 would be classified as a pathogen.

H1N2
type: Class
subclass of: SwineInfluenzaVirus
comment: H1N2 is a swine influenza subtype, resulting from the reassortment of genetic material from human, swine, and avian influenza viruses.

H3N2
type: Class
subclass of: SwineInfluenzaVirus
comment: H3N2 is a subtype of the influenza a virus

Hatching
type: Class
subclass of: PoultryProductionStages
comment: Fertilized eggs are incubated under controlled conditions until chicks hatch, usually in 21 days.

LabReference
type: Class
subclass of: LivestockHealthOntology
comment: Lab reference, often a unique number, is assigned to data related to farm animals for identification and tracking within a laboratory or data system.

Layer
type: Class
subclass of: PoultryProductionStages
comment: Pullets (young hens) are raised to become layers, producing eggs regularly starting around 18–20 weeks.

LivestockHealthOntology
type: Class
subclass of: Thing
has exact synonym: LHO
comment: The Live Stock Health Ontology (LHO), an extension of the DECIDE ontology, serves as a structured framework for organizing information related to the health and well-being of livestock species, encompassing cattle, poultry, pig, and salmon. LHO facilitates the integration of domain knowledge and data, offering explicit representations of various aspects. In the development process, insights from domain experts contribute to the creation of a prototype designed for reasoning and planning of data, particularly concerning cattle. Within LHO, concepts include farms with identifications, samples, geolocation, breed, diagnostic tests, and pathogen identifications. Notably, specific bacteria like Histophilus somni (HS), Mannheimia haemolytica (MH), Pasteurella multocida (PM), Bovine coronavirus (BCV), bacterial mycoplasma, and aerobic culture results for the respiratory tract in cattle are covered. For pigs, additional details encompass FarmType, age, weight-related information, and pathogen names such as Porcine Reproductive and Respiratory Syndrome (PRRS), Swine Infuenza(SI), and Mycoplasma hyopneumoniae are included. This enhanced representation facilitates a comprehensive understanding of pig health, covering aspects of farm classification, age or weight specifics, and the presence of specific pathogens. Similarly, for poultry, LHO incorporates FarmType along with specific pathogen names like Infectious Bronchitis (IB), offering a detailed perspective on poultry health, including farm categorization and information on prevalent diseases.

LivestockProductionSatges
type: Class
subclass of: LivestockHealthOntology
comment: Livestock production stages are the sequential phases in the life and management of farm animals, includingbreeding, birth, suckling, weaning, growing, finishing, and reproduction.

LocalAuthority
type: Class
subclass of: Location
example of usage: For example for Scotland local authority council example areas are Highland, Argyll and Bute, or Glasgow City etc...
comment: An administrative council area that governs and delivers public services for a defined local community region.

Month
type: Class
subclass of: TimeUnit
comment: A time unit based on calendar months, typically used for monthly reporting or trends.

Mortality
type: Class
subclass of: LivestockHealthOntology
comment: Mortality represents the death of one or more individuals in a given animal population, often measured over a specified time frame, due to natural causes, disease, management practices, or environmental factors.

Nursery
type: Class
subclass of: PigProductionStages
comment: Nursery stage is the post-weaning phase (4–10 weeks) where piglets are housed separately, given special feed, and undergo rapid growth, socialization, and health care.

PigProductionStages
type: Class
subclass of: LivestockProductionSatges
comment: Pig production stages focused on growth and productivity

PigSample
type: Class
subclass of: Sample
subclass of: Restriction
  on property: hasPathogen
  some values from: PorcineReproductiveAndRespiratorySyndromeVirus
subclass of: Restriction
  on property: hasPathogen
  some values from: SwineInfluenzaVirus
comment: PigSample is n number of observations for Pig and piglets

PoultryProductionStages
type: Class
subclass of: LivestockProductionSatges
comment: Poultry production stages are the key phases in the lifecycle and management of birds raised for eggs or meat, including breeding, hatching, growing, laying, and processing.

PoultrySample
type: Class
subclass of: Sample
subclass of: Restriction
  on property: hasFlock
  some values from: Flock
subclass of: Restriction
  on property: hasPathogen
  some values from: InfectiousBrochistVirus
comment: PoultrySample is "n" number of observation for Poultry data.
comment: PoultrySample is associated with a specific flock, linking pathogen data, diagnostic tests, and geolocation.

Processing
type: Class
subclass of: PoultryProductionStages
comment: Mature birds are slaughtered, cleaned, and prepared for meat production or market.

Province
type: Class
subclass of: Location
comment: A province is an administrative region or territorial division within a country, typically with its own government and administrative structure.

Salmon
type: Class
subclass of: Species
example of usage: Atlantic salmon (Salmo salar) are frequently farmed in marine cages and monitored for growth, health, and disease events such as sea lice infestation or viral infections.
alternative term: Atlantic salmon Pacific salmon
imported from: https://agrovoc.fao.org/browse/agrovoc/en/page/c_6756
comment: A common name for several species of ray-finned fish in the family Salmonidae, widely farmed in aquaculture systems for food production. Salmon are anadromous, meaning they hatch in freshwater, migrate to the ocean, and return to freshwater to spawn.

SalmonSample
type: Class
subclass of: Sample
example of usage: SalmonSample is "n" number of observation for Salmon data.
comment: A SalmonSample represents a biological sample collected from a salmon individual, associated with pathogen detection, diagnostic tests, and location data, Mortality rate, actual biomass and water type.

SampleNumber
type: Class
subclass of: LivestockHealthOntology
comment: SampleNumber is a unique identifier assigned to a specimen collected from livestock or other sources for purposes such as diagnostics or research, facilitating individual sample tracking and data organization.

SlughterEvent
type: Class
subclass of: EventType
comment: Slaughter event refers to the process of killing animals, usually for meat production or other purposes.

Species
type: Class
subclass of: LivestockHealthOntology
comment: Cattle, pig, and poultry represent distinct species within the animal kingdom commonly raised for agricultural purposes, including meat production.
comment: Livestock species classification
equivalent class: http://www.purl.org/decide#SpeciesGroup

Suckling
type: Class
subclass of: PigProductionStages
comment: Suckling stage begins at birth and lasts for about 21–28 days (3–4 weeks), during which piglets nurse from the sow. They are born small (2–3 pounds), blind, and hairless but quickly develop eyesight, teeth, and mobility. By around 3 weeks, they begin nibbling on solid feed alongside milk as they prepare for weaning.

Swab
type: Class
subclass of: SampleType
comment: A swab is a sample collection method involving a small absorbent tool, often a cotton-tipped applicator, used to collect specimens from surfaces or body areas, such as the throat or nasal cavity, for diagnostic or research purposes.

TimeUnit
type: Class
subclass of: Unit
comment: Measuring time

Tissue
type: Class
subclass of: SampleType
type: NamedIndividual
type: SampleType
affectsSpecies: Pig
comment: A tissue sample is a specimen composed of cells derived from an organism's body, collected for diagnostic or research purposes to study cellular structures, functions, or identify potential abnormalities.

VacinationEvent
type: Class
subclass of: EventType
comment: Vaccination event refers to the process of giving vaccines to individuals or animals to protect them from specific diseases.

WaterType
type: Class
subclass of: LivestockHealthOntology
comment: In aquaculture (fish farming, like salmon farming), WaterType refers to the kind of water environment (freshwater, seawater, or brackish) the animals are raised in.

Weaning
type: Class
subclass of: PigProductionStages
type: NamedIndividual
type: PigProductionStages
comment: Weaning stage (4–8 weeks) is when piglets are separated from the sow and transition fully to solid food, ending milk consumption.

Weight
type: Class
subclass of: MeasurementType
comment: A measurement type

WeightUnit
type: Class
subclass of: Unit
comment: A measurement unit used to quantify mass or weight, such as grams, kilograms, or pounds.

Year
type: Class
subclass of: TimeUnit
comment: A unit of time representing 12 months, often used for annual summaries or long-term analysis.

ArgyllandBute
type: NamedIndividual
type: LocalAuthority
comment: An individual representing different Local Authorities in UK.

BCV
type: NamedIndividual
type: Pathogen
affectsSpecies: Cattle
causesDisease: Viral Disease
comment: Bovine Coronavirus (BCV) is a viral pathogen causing respiratory and enteric diseases in cattle.

BRSV
type: NamedIndividual
type: Pathogen
affectsSpecies: Cattle
causesDisease: Viral Disease
comment: Bovine Respiratory Syncytial Virus

Belgium
type: NamedIndividual
type: Country
affectsSpecies: Cattle
hasGeographicNeighbor: France
hasGeographicNeighbor: The Netherland
comment: Belgium - European country with land borders to France and The Netherlands.

CattleSample01
type: NamedIndividual
type: CattleSample
has breed: Beef
has diagnostic test: PCR
has sample result: 0
comment: An individual type of Sample

Suckler
type: NamedIndividual
type: Breed
affectsSpecies: Cattle
comment: Suckler cattle are breeds raised primarily for meat production, where calves are nursed by their mothers until weaning.

PRRS
type: NamedIndividual
type: PorcineReproductiveAndRespiratorySyndromeVirus
type: Pathogen
affectsSpecies: Pig
comment: An individual type pathogen

0
type: NamedIndividual
type: SampleResult
comment: an individual type of sample results

1
type: NamedIndividual
type: SampleResult
comment: an individual type of sample results

Beef
type: NamedIndividual
type: Breed
affectsSpecies: Cattle
comment: an individual type of breed

PCR
type: NamedIndividual
type: DiagnosticTest
comment: an individual (entity) that represent PCR

Veal
type: NamedIndividual
type: Breed
affectsSpecies: Cattle
comment: Veal cattle are young calves (typically under 8 months) raised for veal meat production. Often includes male dairy calves or crossbred calves from dairy herds

Unknown
type: NamedIndividual
type: Breed
affectsSpecies: Cattle
comment: Unknown breed category used when the specific breed information is not available or not recorded in the sample data

Nps
type: NamedIndividual
type: SampleType
affectsSpecies: Cattle
has exact synonym: Nasopharyngeal Swab
comment: Nasopharyngeal Swab (NPS) is a sample collection method where a swab is inserted through the nostril to collect secretions from the nasopharynx. Commonly used for detecting respiratory pathogens

Tta
type: NamedIndividual
type: SampleType
affectsSpecies: Cattle
has exact synonym: Trans-tracheal Aspirate (TTA)
comment: Trans-tracheal Aspirate (TTA) is a diagnostic sample collected by inserting a catheter through the trachea to obtain lower respiratory tract secretions. Used for accurate identification of bacterial pathogens

FlockID_261479
type: NamedIndividual
type: Flock
hasSample: PoultrySample101
hasFlockID: 261479
hasVetID: 4856405
hasHatchDate: 2019-09-05
hasRemovalDate: 2019-10-31
hasGrowthCurve: ALT
hasThinned: 1
comment: is an individual instance representing a specific, uniquely identified flock entity used to associate birds with a defined production or health unit or samples

PoultrySample101
type: NamedIndividual
type: PoultrySample
has diagnostic test: PCR
has pathogen: IB
result: 1
date: 2019-09-10

IB
type: NamedIndividual
type: InfectiousBrochistVirus
affectsSpecies: Poultry
comment: an individual (entity) that represent Infectious Bronchis pathogen

Missing
type: NamedIndividual
type: SampleType
affectsSpecies: Cattle

BRSVDisease
type: NamedIndividual
type: Viral Disease
comment: an individual or instance type of Disease

SwineInfluenzaDisease
type: NamedIndividual
type: Viral Disease
comment: An individual type Disease

Lawsonia intracellularis
type: NamedIndividual
type: Pathogen
affectsSpecies: Pig

3
type: NamedIndividual
type: LabReference
comment: Individual refering Lab number

Freshwater
type: NamedIndividual
type: WaterType

ISAV
type: NamedIndividual
type: InfectiousSalmonAnemiaVirus

SeaLiceInfestation
type: NamedIndividual
type: Disease
comment: An individual that represent an infectious disease in salmon caused by parasitic copepods Lepeophtheirus salmonis

4
type: NamedIndividual
type: LabReference
comment: Individual refering Lab number

5
type: NamedIndividual
type: LabReference
comment: Individual refering Lab number

6
type: NamedIndividual
type: LabReference
comment: Individual refering Lab number

BRD_Prevalence
type: NamedIndividual
type: Prevelance
comment: The prevalence of Bovine Respiratory Disease (BRD) in cattle varies significantly across different regions, age groups, and diagnostic methods. BRD is estimated to affect 2.1% to 20.2% of cattle, with higher rates observed in winter months. The disease is a leading cause of morbidity and mortality in pre-weaned dairy calves, and its economic impact is substantial, leading to mortality, reduced growth, and lower carcass value.

PRDC_Prevalence
type: NamedIndividual
type: Prevelance
comment: The prevalence of Porcine Respiratory Disease Complex (PRDC)

Cattle
type: NamedIndividual
type: Species
comment: Bovine species - cattle, cows, calves

Culture
type: NamedIndividual
type: DiagnosticTest
comment: an individual type of dianostic test

EileanSiar
type: NamedIndividual
type: LocalAuthority
comment: An individual representing different Local Authorities in UK.

FarmID_1646742
type: NamedIndividual
type: FarmIdentification
hasPoultryFarmIdentification: PF_ID_38423
comment: This is a general Farm ID

FarmID_1729635
type: NamedIndividual
type: FarmIdentification
hasPoultryFarmIdentification: PF_ID_38615
comment: This is a general Farm ID

FarmID_1761167
type: NamedIndividual
type: FarmIdentification
hasPoultryFarmIdentification: PF_ID_39105
comment: This is a general Farm ID

FarmID_1977700
type: NamedIndividual
type: FarmIdentification
hasPoultryFarmIdentification: PF_ID_39488
comment: This is a general Farm ID

FarmID_2214740
type: NamedIndividual
type: FarmIdentification
hasPoultryFarmIdentification: PF_ID_39044
comment: This is a general Farm ID

FarmID_2752546
type: NamedIndividual
type: FarmIdentification
hasPoultryFarmIdentification: PF_ID_38236
comment: This is a general Farm ID

FarmID_2811332
type: NamedIndividual
type: FarmIdentification
hasPoultryFarmIdentification: PF_ID_40981
comment: This is a general Farm ID

FarmID_6369989
type: NamedIndividual
type: FarmIdentification
hasPoultryFarmIdentification: PF_ID_38543
comment: This is a general Farm ID

FarmID_946937
type: NamedIndividual
type: FarmIdentification
hasPoultryFarmIdentification: PF_ID_40458
comment: This is a general Farm ID

PF_ID_38236
type: NamedIndividual
type: PoultryFarmIdentification
hasHouse: House_2752546_1
comment: This is a Poultry Farm ID

PF_ID_38423
type: NamedIndividual
type: PoultryFarmIdentification
hasHouse: House_1646742_6
comment: This is a Poultry Farm ID

PF_ID_38543
type: NamedIndividual
type: PoultryFarmIdentification
hasHouse: House_6369989_4
comment: This is a Poultry Farm ID

PF_ID_38615
type: NamedIndividual
type: PoultryFarmIdentification
hasHouse: House_1729635_2
hasHouse: House_1729635_3
comment: This is a Poultry Farm ID

PF_ID_39044
type: NamedIndividual
type: PoultryFarmIdentification
hasHouse: House_2214740_1
hasHouse: House_2214740_2
hasHouse: House_2214740_3
comment: This is a Poultry Farm ID

PF_ID_39105
type: NamedIndividual
type: PoultryFarmIdentification
hasHouse: House_1761167_5
comment: This is a Poultry Farm ID

PF_ID_39488
type: NamedIndividual
type: PoultryFarmIdentification
hasHouse: House_1977700_1
comment: This is a Poultry Farm ID

PF_ID_40458
type: NamedIndividual
type: PoultryFarmIdentification
hasHouse: House_946937_1
comment: This is a Poultry Farm ID

PF_ID_40981
type: NamedIndividual
type: PoultryFarmIdentification
hasHouse: House_2811332_2
comment: This is a Poultry Farm ID

FlockID_261479
type: NamedIndividual
type: Flock
hasFlockID: 261479
hasVetID: 4856405
hasHatchDate: 2019-09-05
hasRemovalDate: 2019-10-31
hasGrowthCurve: ALT
hasThinned: 1
comment: is an individual instance representing a specific, uniquely identified flock entity used to associate birds with a defined production or health unit or samples

FlockID_261895
type: NamedIndividual
type: Flock
hasFlockID: 261895
hasVetID: 164846
hasHatchDate: 2019-09-12
hasRemovalDate: 2019-11-05
hasGrowthCurve: ALT
hasThinned: 0
comment: An individual instance representing a specific, uniquely identified flock entity used to associate birds with a defined production or health unit or samples

FlockID_266024
type: NamedIndividual
type: Flock
hasFlockID: 266024
hasVetID: 164846
hasHatchDate: 2019-11-22
hasRemovalDate: 2020-01-15
hasGrowthCurve: ALT
hasThinned: 0
comment: An individual instance representing a specific, uniquely identified flock entity used to associate birds with a defined production or health unit or samples

FlockID_267678
type: NamedIndividual
type: Flock
hasFlockID: 267678
hasVetID: 164846
hasHatchDate: 2019-12-23
hasRemovalDate: 2020-02-20
hasGrowthCurve: ALT
hasThinned: 1
comment: An individual instance representing a specific, uniquely identified flock entity used to associate birds with a defined production or health unit or samples

FlockID_268273
type: NamedIndividual
type: Flock
hasFlockID: 268273
hasVetID: 164846
hasHatchDate: 2019-12-27
hasRemovalDate: 2020-02-06
hasGrowthCurve: REG
hasThinned: 1
comment: An individual instance representing a specific, uniquely identified flock entity used to associate birds with a defined production or health unit or samples

FlockID_273330
type: NamedIndividual
type: Flock
hasFlockID: 273330
hasVetID: 164846
hasHatchDate: 2020-03-31
hasRemovalDate: 2020-05-13
hasGrowthCurve: REG
hasThinned: 1
comment: An individual instance representing a specific, uniquely identified flock entity used to associate birds with a defined production or health unit or samples

FlockID_273670
type: NamedIndividual
type: Flock
hasFlockID: 273670
hasVetID: 487236
hasHatchDate: 2020-04-07
hasRemovalDate: 2020-05-20
hasGrowthCurve: REG
hasThinned: 1
comment: An individual instance representing a specific, uniquely identified flock entity used to associate birds with a defined production or health unit or samples

FlockID_273898
type: NamedIndividual
type: Flock
hasFlockID: 273898
hasVetID: 164846
hasHatchDate: 2020-04-06
hasRemovalDate: 2020-05-20
hasGrowthCurve: REG
hasThinned: 1
comment: An individual instance representing a specific, uniquely identified flock entity used to associate birds with a defined production or health unit or samples

FlockID_274072
type: NamedIndividual
type: Flock
hasFlockID: 274072
hasVetID: 487236
hasHatchDate: 2020-04-08
hasRemovalDate: 2020-05-20
hasGrowthCurve: REG
hasThinned: 1
comment: An individual instance representing a specific, uniquely identified flock entity used to associate birds with a defined production or health unit or samples

FlockID_274453
type: NamedIndividual
type: Flock
hasFlockID: 274453
hasVetID: 487236
hasHatchDate: 2020-04-21
hasRemovalDate: 2020-06-03
hasGrowthCurve: REG
hasThinned: 1
comment: An individual instance representing a specific, uniquely identified flock entity used to associate birds with a defined production or health unit or samples

FlockID_279259
type: NamedIndividual
type: Flock
hasFlockID: 279259
hasVetID: 487236
hasHatchDate: 2020-07-14
hasRemovalDate: 2020-08-26
hasGrowthCurve: REG
hasThinned: 1
comment: An individual instance representing a specific, uniquely identified flock entity used to associate birds with a defined production or health unit or samples

FlockID_279597
type: NamedIndividual
type: Flock
hasFlockID: 279597
hasVetID: 487236
hasHatchDate: 2020-07-20
hasRemovalDate: 2020-09-09
hasGrowthCurve: ALT
hasThinned: 0
comment: An individual instance representing a specific, uniquely identified flock entity used to associate birds with a defined production or health unit or samples

FlockID_280335
type: NamedIndividual
type: Flock
hasFlockID: 280335
hasVetID: 487236
hasHatchDate: 2020-07-31
hasRemovalDate: 2020-09-10
hasGrowthCurve: REG
hasThinned: 0
comment: An individual instance representing a specific, uniquely identified flock entity used to associate birds with a defined production or health unit or samples

France
type: NamedIndividual
type: Country
affectsSpecies: Cattle
comment: France - European country with land border to Belgium.

Gelderland
type: NamedIndividual
type: Province
comment: An individual representing different Province.

HS
type: NamedIndividual
type: Pathogen
affectsSpecies: Cattle
causesDisease: Bacterial Disease
comment: Histophilus somni (member of the Pasteurellaceae family)

Highland
type: NamedIndividual
type: LocalAuthority
comment: An individual representing different Local Authorities in UK.

House_1646742_6
type: NamedIndividual
type: House
hasFlock: FlockID_261895
houseNumber: 6
comment: House (like 1, 2, 3) appears in many farms, but it's contextual.That means Farm A might have House 1, and Farm B also might have its own House 1 — but they're not the same. so we model House individuals uniquely per Farm or PoultryFarm (e.g., House_Farm2214740_1).

House_1729635_2
type: NamedIndividual
type: House
hasFlock: FlockID_273670
houseNumber: 2
comment: House (like 1, 2, 3) appears in many farms, but it's contextual.That means Farm A might have House 1, and Farm B also might have its own House 1 — but they're not the same. so we model House individuals uniquely per Farm or PoultryFarm (e.g., House_Farm2214740_1).

House_1729635_3
type: NamedIndividual
type: House
hasFlock: FlockID_273898
houseNumber: 3
comment: House (like 1, 2, 3) appears in many farms, but it's contextual.That means Farm A might have House 1, and Farm B also might have its own House 1 — but they're not the same. so we model House individuals uniquely per Farm or PoultryFarm (e.g., House_Farm2214740_1).

House_1761167_5
type: NamedIndividual
type: House
hasFlock: FlockID_266024
houseNumber: 5
comment: House (like 1, 2, 3) appears in many farms, but it's contextual.That means Farm A might have House 1, and Farm B also might have its own House 1 — but they're not the same. so we model House individuals uniquely per Farm or PoultryFarm (e.g., House_Farm2214740_1).

House_1977700_1
type: NamedIndividual
type: House
hasFlock: FlockID_267678
houseNumber: 1
comment: House (like 1, 2, 3) appears in many farms, but it's contextual.That means Farm A might have House 1, and Farm B also might have its own House 1 — but they're not the same. so we model House individuals uniquely per Farm or PoultryFarm (e.g., House_Farm2214740_1).

House_2214740_1
type: NamedIndividual
type: House
hasFlock: FlockID_279597
houseNumber: 1
comment: House (like 1, 2, 3) appears in many farms, but it's contextual.That means Farm A might have House 1, and Farm B also might have its own House 1 — but they're not the same. so we model House individuals uniquely per Farm or PoultryFarm (e.g., House_Farm2214740_1).

House_2214740_2
type: NamedIndividual
type: House
hasFlock: FlockID_279259
houseNumber: 2
comment: House (like 1, 2, 3) appears in many farms, but it's contextual.That means Farm A might have House 1, and Farm B also might have its own House 1 — but they're not the same. so we model House individuals uniquely per Farm or PoultryFarm (e.g., House_Farm2214740_1).

House_2214740_3
type: NamedIndividual
type: House
hasFlock: FlockID_274453
houseNumber: 3
comment: House (like 1, 2, 3) appears in many farms, but it's contextual.That means Farm A might have House 1, and Farm B also might have its own House 1 — but they're not the same. so we model House individuals uniquely per Farm or PoultryFarm (e.g., House_Farm2214740_1).

House_2752546_1
type: NamedIndividual
type: House
hasFlock: FlockID_261479
houseNumber: 1
comment: House (like 1, 2, 3) appears in many farms, but it's contextual.That means Farm A might have House 1, and Farm B also might have its own House 1 — but they're not the same. so we model House individuals uniquely per Farm or PoultryFarm (e.g., House_Farm2214740_1).

House_2811332_2
type: NamedIndividual
type: House
hasFlock: FlockID_268273
houseNumber: 2
comment: House (like 1, 2, 3) appears in many farms, but it's contextual.That means Farm A might have House 1, and Farm B also might have its own House 1 — but they're not the same. so we model House individuals uniquely per Farm or PoultryFarm (e.g., House_Farm2214740_1).

House_6369989_4
type: NamedIndividual
type: House
hasFlock: FlockID_274072
houseNumber: 4
comment: House (like 1, 2, 3) appears in many farms, but it's contextual.That means Farm A might have House 1, and Farm B also might have its own House 1 — but they're not the same. so we model House individuals uniquely per Farm or PoultryFarm (e.g., House_Farm2214740_1).

House_946937_1
type: NamedIndividual
type: House
hasFlock: FlockID_280335
houseNumber: 1
comment: House (like 1, 2, 3) appears in many farms, but it's contextual.That means Farm A might have House 1, and Farm B also might have its own House 1 — but they're not the same. so we model House individuals uniquely per Farm or PoultryFarm (e.g., House_Farm2214740_1).

Ireland
type: NamedIndividual
type: Country
affectsSpecies: Cattle
comment: Ireland - Island nation with no land borders to other countries in this dataset.

Lab1CattleSample_0
type: NamedIndividual
type: CattleSample
has breed: Meat
has country: The Netherland
has date: http://www.purl.org/decide/LiveStockHealthOnto/LHO#2018-01-01
has lab reference: http://www.purl.org/decide/LiveStockHealthOnto/LHO#2
has pathogen: PM
has province: Gelderland
has sample type: Autopsy
comment: An individual representing a sample from a cattle.

Lab1CattleSample 1
type: NamedIndividual
type: CattleSample
has breed: Dairy
has country: The Netherland
has date: http://www.purl.org/decide/LiveStockHealthOnto/LHO#2018-01-01
has diagnostic test: Culture
has lab reference: http://www.purl.org/decide/LiveStockHealthOnto/LHO#2
has pathogen: BRSV
has province: Gelderland
has sample type: BAL
comment: An individual representing a sample from a cattle.

Lab1CattleSample 2
type: NamedIndividual
type: CattleSample
has breed: Mixed
has country: The Netherland
has date: http://www.purl.org/decide/LiveStockHealthOnto/LHO#2018-01-01
has diagnostic test: Culture
has lab reference: http://www.purl.org/decide/LiveStockHealthOnto/LHO#2
has pathogen: MH
has province: NorthBrabant
has sample type: SWAB
comment: An individual representing a sample from a cattle.

Lab1PoultrySample_0
type: NamedIndividual
type: PoultrySample
has breed: Meat
has country: The Netherland
has date: 2014-Q1
has pathogen: QX
has province: Noord-Brabant
has sample type: SS
comment: An individual representing a sample from a Poultry or Chiken.

Lab1PoultrySample 1
type: NamedIndividual
type: PoultrySample
has breed: Meat
has country: The Netherland
has date: 2014-Q1
has pathogen: 793B
has province: Limburg
has sample type: SS
comment: An individual representing a sample from a Poultry or Chiken.

Lab1PoultrySample 2
type: NamedIndividual
type: PoultrySample
has breed: Meat
has country: The Netherland
has date: 2014-Q1
has pathogen: Mass
has province: Limburg
has sample type: SS
comment: An individual representing a sample from a Poultry or Chiken.

Lab1PoultrySample 3
type: NamedIndividual
type: PoultrySample
has breed: Meat
has country: The Netherland
has date: 2014-Q1
has pathogen: QX
has province: Noord-Brabant
has sample type: SS
comment: An individual representing a sample from a Poultry or Chiken.

Lab1SalmonSample_0
type: NamedIndividual
type: SalmonSample
hasActualBiomass: 0
hasWaterType: Seawater
hasMortality: http://www.purl.org/decide/LiveStockHealthOnto/LHO#0.0
hasLocalAuthority: Highland
has country: Scotland
has date: http://www.purl.org/decide/LiveStockHealthOnto/LHO#2024-12-01
comment: An individual representing a sample from a Salmon.

Lab1SalmonSample 1
type: NamedIndividual
type: SalmonSample
hasWaterType: Seawater
hasLocalAuthority: ArgyllandBute
has country: Scotland
has date: http://www.purl.org/decide/LiveStockHealthOnto/LHO#2024-12-01
comment: An individual representing a sample from a Salmon.

Lab1SalmonSample 4
type: NamedIndividual
type: SalmonSample
hasActualBiomass: 0
hasWaterType: Seawater
hasMortality: http://www.purl.org/decide/LiveStockHealthOnto/LHO#0.0
hasLocalAuthority: ShetlandIslands
has country: Scotland
has date: http://www.purl.org/decide/LiveStockHealthOnto/LHO#2024-12-01
comment: An individual representing a sample from a Salmon.

Lab1SalmonSample 7
type: NamedIndividual
type: SalmonSample
hasWaterType: Seawater
hasLocalAuthority: EileanSiar
has country: Scotland
has date: http://www.purl.org/decide/LiveStockHealthOnto/LHO#2024-12-01
comment: An individual representing a sample from a Salmon.

Lab4PigSample_0
type: NamedIndividual
type: PigSample
has breed: Meat
has country: Spain
has date: 01/07/2020
has pathogen: Mycoplasma hyopneumoniae
has province: Valencia
has sample type: Tissue
comment: An individual representing a sample from a Pig and Piglets.

Lab4PigSample 1
type: NamedIndividual
type: PigSample
has breed: Meat
has country: Spain
has date: 01/07/2020
has pathogen: Swine influenza virus
has province: Valencia
has sample type: Tissue
comment: An individual representing a sample from a Pig and Piglets.

Lab4PigSample 2
type: NamedIndividual
type: PigSample
has breed: Meat
has country: Spain
has date: 01/07/2020
has pathogen: Mycoplasma hyopneumoniae
has province: Valencia
has sample type: Tissue
comment: An individual representing a sample from a Pig and Piglets.

Lab4PigSample 3
type: NamedIndividual
type: PigSample
has breed: Meat
has country: Spain
has date: 01/07/2020
has pathogen: Swine influenza virus
has province: Madrid
has sample type: Tissue
comment: An individual representing a sample from a Pig and Piglets.

Limburg
type: NamedIndividual
type: Province
comment: An individual representing different Province.

MB
type: NamedIndividual
type: Pathogen
affectsSpecies: Cattle
causesDisease: Bacterial Disease
has exact synonym: Mycoplasma bovis
comment: Mycoplasma bovis

MH
type: NamedIndividual
type: Pathogen
affectsSpecies: Cattle
causesDisease: Bacterial Disease
has exact synonym: Mannheimia haemolytica
comment: Mannheimia haemolytica (member of the Pasteurellaceae family, two major genotypes (1 and 2))

Madrid
type: NamedIndividual
type: Province
comment: An individual representing different Province.

Mass
type: NamedIndividual
type: Pathogen
affectsSpecies: Poultry
comment: An individual representing Polutry Pathogen.

Meat
type: NamedIndividual
type: Breed
affectsSpecies: Pig
affectsSpecies: Poultry
comment: An individual representing Breed Type.
comment: An individual representing a cattle breed of mixed meat and dairy type.

Mycoplasma hyopneumoniae
type: NamedIndividual
type: Pathogen
affectsSpecies: Pig
comment: An individual representing Pig pathogen.

Noord-Brabant
type: NamedIndividual
type: Province
comment: An individual representing different Province.

NorthBrabant
type: NamedIndividual
type: Province
comment: An individual representing different Province.

PI3
type: NamedIndividual
type: Pathogen
affectsSpecies: Cattle
causesDisease: Viral Disease
has exact synonym: PI3
has exact synonym: Parainfluenza-3
comment: Parainfluenza-3 Virus (PI3) is a viral respiratory pathogen in cattle belonging to the Paramyxoviridae family. It causes upper respiratory tract infections and is a common contributor to the Bovine Respiratory Disease (BRD) complex.

PM
type: NamedIndividual
type: Pathogen
affectsSpecies: Cattle
causesDisease: Bacterial Disease
has exact synonym: Pasteurella multocida
comment: An individual representing a cattle breed of mixed meat and dairy type.

Pig
type: NamedIndividual
type: Species
comment: Porcine species - pigs, swine

Poultry
type: NamedIndividual
type: Species
comment: Avian species - chickens, turkeys, ducks

QX
type: NamedIndividual
type: Pathogen
affectsSpecies: Poultry
comment: An individual representing Polutry Pathogen.

SS
type: NamedIndividual
type: SampleType
affectsSpecies: Poultry
comment: An individual representing SampleType for Poultry.
comment: Unknown breed category used when the specific breed information is not available or not recorded in the sample data

SWAB
type: NamedIndividual
type: SampleType
affectsSpecies: Cattle
affectsSpecies: Pig
comment: individual for diagnostic test

Scotland
type: NamedIndividual
type: Country
comment: An individual representing different Countries.

Seawater
type: NamedIndividual
type: WaterType
comment: An individual that represents the water type for salmon.

ShetlandIslands
type: NamedIndividual
type: LocalAuthority
comment: An individual representing different Local Authorities in UK.

Spain
type: NamedIndividual
type: Country
affectsSpecies: Pig
comment: An individual representing different Countries.

Swine influenza virus
type: NamedIndividual
type: Pathogen
comment: An individual representing Pig pathogen.

The Netherland
type: NamedIndividual
type: Country
affectsSpecies: Cattle
affectsSpecies: Poultry
comment: An individual representing Country.
comment: The Netherlands - European country with land border to Belgium.
label: TheNetherlands

Valencia
type: NamedIndividual
type: Province
comment: An individual representing different Province.

http://www.purl.org/decide/LiveStockHealthOnto/LHO#0
type: NamedIndividual
type: ActualBiomass
comment: An individual representing Actual biomass of salmon.

http://www.purl.org/decide/LiveStockHealthOnto/LHO#0.0
type: NamedIndividual
type: Mortality
comment: An individual sample representing Salmon Mortality.

01/07/2020
type: NamedIndividual
type: Date
comment: An individual represent date

http://www.purl.org/decide/LiveStockHealthOnto/LHO#1
type: NamedIndividual
type: LabReference
comment: An individual representing Lab refence

http://www.purl.org/decide/LiveStockHealthOnto/LHO#2
type: NamedIndividual
type: LabReference
comment: An individual representing Lab refence

2014-Q1
type: NamedIndividual
type: Date
comment: An individual representing a Particular Date.

http://www.purl.org/decide/LiveStockHealthOnto/LHO#2024-12-01
type: NamedIndividual
type: Date
comment: An individual representing the sampling date.

793B
type: NamedIndividual
type: Pathogen
affectsSpecies: Poultry
comment: An individual representing Polutry Pathogen.