128 444 43 http://purl.obolibrary.org/obo/OBI_0001144 binding constant 'binding constant' SubClassOf 'binding datum' 'binding constant' EquivalentTo 'equilibrium dissociation constant (KD)' or 'equilibrium association constant (KA)' or 'equilibrium dissociation constant (KD) approximated by IC50' or 'equilibrium dissociation constant (KD) approximated by EC50' or 'half life of binding datum' or 'binding off rate measurement datum (koff)' or 'binding on rate measurement datum (kon)' 'binding constant' SubClassOf http://purl.obolibrary.org/obo/OBI_0003142 http://purl.obolibrary.org/obo/OBI_1110108 material to be added 'material to be added' SubClassOf 'material entity' 'material to be added' EquivalentTo 'has role' some 'material to be added role' http://purl.obolibrary.org/obo/OBI_0001158 age measurement assay 'age measurement assay' SubClassOf 'has_specified_output' some 'age measurement datum' 'age measurement assay' SubClassOf 'assay' http://purl.obolibrary.org/obo/OBCS_0000122 transformed data matrix 'transformed data matrix' EquivalentTo 'data item' and ('has member' only 'transformed data set') and ('has member' min 2 'transformed data set') 'transformed data matrix' SubClassOf 'data matrix' 'transformed data matrix' EquivalentTo 'data item' and ('has member' some 'transformed data set') and ('has member' min 2 'transformed data set') 'transformed data matrix' SubClassOf 'data item' http://www.geneontology.org/formats/oboInOwl#Synonym http://www.geneontology.org/formats/oboInOwl#Synonym SubClassOf 'data about an ontology part' http://purl.obolibrary.org/obo/OBI_0000075 diagnosis textual entity 'diagnosis textual entity' SubClassOf 'textual entity' http://purl.obolibrary.org/obo/OBI_0001167 age measurement datum 'age measurement datum' SubClassOf 'is_specified_output_of' some 'age measurement assay' http://purl.obolibrary.org/obo/OBI_0000070 assay 'assay' SubClassOf 'has_specified_output' some ('information content entity' and ('is about' some ('material entity' and ('has role' some 'evaluant role')))) 'assay' SubClassOf 'has_specified_output' some ('data item' and ('is about' some ('material entity' and ('has role' some 'evaluant role')))) http://purl.obolibrary.org/obo/IAO_0000225 obsolescence reason specification 'obsolescence reason specification' EquivalentTo {'failed exploratory term' , 'placeholder removed' , 'terms merged' , 'term imported' , 'term split'} 'obsolescence reason specification' EquivalentTo {'failed exploratory term' , 'placeholder removed' , 'terms merged' , 'term imported' , 'term split' , http://purl.obolibrary.org/obo/OMO_0001000} http://purl.obolibrary.org/obo/OBI_0001581 equilibrium dissociation constant (KD) approximated by EC50 'equilibrium dissociation constant (KD) approximated by EC50' SubClassOf 'half maximal effective concentration (EC50)' 'equilibrium dissociation constant (KD) approximated by EC50' SubClassOf 'binding constant' 'equilibrium dissociation constant (KD) approximated by EC50' SubClassOf 'equilibrium dissociation constant (KD)' 'equilibrium dissociation constant (KD) approximated by EC50' EquivalentTo 'equilibrium dissociation constant (KD)' and ('half maximal effective concentration (EC50)' and ('is about' some 'binding')) 'equilibrium dissociation constant (KD) approximated by EC50' SubClassOf http://purl.obolibrary.org/obo/OBI_0003143 http://purl.obolibrary.org/obo/OBI_0001583 half life of binding datum 'half life of binding datum' EquivalentTo 'binding constant' and ('half life datum (t 1/2)' and ('is about' some 'binding')) http://purl.obolibrary.org/obo/BFO_0000040 material entity 'material entity' DisjointWith 'immaterial entity' http://purl.obolibrary.org/obo/IAO_0000032 scalar measurement datum 'scalar measurement datum' SubClassOf 'has value specification' some 'scalar value specification' http://purl.obolibrary.org/obo/PATO_0000125 mass 'mass' SubClassOf 'quality' 'mass' SubClassOf http://purl.obolibrary.org/obo/PATO_0001018 http://purl.obolibrary.org/obo/OBI_0200101 linear discriminant functional analysis 'linear discriminant functional analysis' SubClassOf http://purl.obolibrary.org/obo/APOLLO_SV_00000796 http://purl.obolibrary.org/obo/OBI_0200104 principal component regression 'principal component regression' SubClassOf http://purl.obolibrary.org/obo/APOLLO_SV_00000796 http://purl.obolibrary.org/obo/OBI_0001566 50% dissociation of binding temperature (Tm) '50% dissociation of binding temperature (Tm)' SubClassOf 'binding datum' '50% dissociation of binding temperature (Tm)' SubClassOf http://purl.obolibrary.org/obo/OBI_0003142 http://purl.obolibrary.org/obo/STATO_0000260 repeated measure ANOVA 'repeated measure ANOVA' SubClassOf http://purl.obolibrary.org/obo/STATO_0000202 http://purl.obolibrary.org/obo/CHEBI_16670 peptide 'peptide' SubClassOf 'macromolecule' http://www.geneontology.org/formats/oboInOwl#Definition http://www.geneontology.org/formats/oboInOwl#Definition SubClassOf 'data about an ontology part' http://purl.obolibrary.org/obo/OBI_0000245 organization 'organization' SubClassOf 'material entity' http://purl.obolibrary.org/obo/OBI_0001571 equilibrium dissociation constant (KD) approximated by IC50 'equilibrium dissociation constant (KD) approximated by IC50' SubClassOf 'half maximal inhibitory concentration (IC50)' 'equilibrium dissociation constant (KD) approximated by IC50' SubClassOf 'binding constant' 'equilibrium dissociation constant (KD) approximated by IC50' EquivalentTo 'equilibrium dissociation constant (KD)' and ('half maximal inhibitory concentration (IC50)' and ('is about' some 'binding')) 'equilibrium dissociation constant (KD) approximated by IC50' SubClassOf http://purl.obolibrary.org/obo/OBI_0003144 'equilibrium dissociation constant (KD) approximated by IC50' SubClassOf 'equilibrium dissociation constant (KD)' http://purl.obolibrary.org/obo/PATO_0000122 length 'length' SubClassOf 'quality' 'length' SubClassOf http://purl.obolibrary.org/obo/PATO_0001241 http://purl.obolibrary.org/obo/OBI_0000411 cloning vector role 'cloning vector role' SubClassOf ('inheres in' some 'nucleic acid') and ('realized in' only 'recombinant vector cloning') 'cloning vector role' SubClassOf 'material to be added role' http://purl.obolibrary.org/obo/OBI_0000416 cloning insert role 'cloning insert role' SubClassOf 'role' http://purl.obolibrary.org/obo/OBI_0000658 data representational model 'data representational model' SubClassOf 'statistical model' 'data representational model' SubClassOf 'directive information entity' http://purl.obolibrary.org/obo/SO_0001248 assembly 'assembly' SubClassOf 'region' 'assembly' SubClassOf http://purl.obolibrary.org/obo/SO_0001410 http://purl.obolibrary.org/obo/OBI_0000666 background correction data transformation 'background correction data transformation' SubClassOf http://purl.obolibrary.org/obo/APOLLO_SV_00000796 http://purl.obolibrary.org/obo/PATO_0000186 behavioral quality 'behavioral quality' SubClassOf 'quality of a single physical entity' http://purl.obolibrary.org/obo/OBI_0000668 error correction data transformation 'error correction data transformation' SubClassOf 'data transformation in statistics' 'error correction data transformation' SubClassOf 'data transformation' http://purl.obolibrary.org/obo/OBI_0000674 center value 'center value' SubClassOf 'data set of features' http://purl.obolibrary.org/obo/PATO_0001237 quality of a single physical entity 'quality of a single physical entity' SubClassOf 'quality' http://purl.obolibrary.org/obo/OBI_0000679 average value 'average value' SubClassOf 'data set of features' http://www.geneontology.org/formats/oboInOwl#DbXref http://www.geneontology.org/formats/oboInOwl#DbXref SubClassOf 'data about an ontology part' http://purl.obolibrary.org/obo/PATO_0000161 rate 'rate' SubClassOf 'quality' 'rate' SubClassOf http://purl.obolibrary.org/obo/PATO_0000001 http://purl.obolibrary.org/obo/OBI_0000731 recombinant vector 'recombinant vector' EquivalentTo 'material entity' and ('is_specified_output_of' some 'recombinant vector cloning') 'recombinant vector' SubClassOf 'processed material' http://purl.obolibrary.org/obo/OBI_0000737 cloning vector 'cloning vector' EquivalentTo 'material entity' and ('has role' some 'cloning vector role') 'cloning vector' SubClassOf 'is_specified_output_of' some 'material processing' 'cloning vector' SubClassOf 'material to be added' 'cloning vector' SubClassOf 'processed material' http://purl.obolibrary.org/obo/OBI_0000736 single fragment library 'single fragment library' SubClassOf 'processed material' http://purl.obolibrary.org/obo/OBI_1000029 phage display library 'phage display library' SubClassOf 'recombinant vector' 'phage display library' SubClassOf 'is_specified_output_of' some 'recombinant vector cloning' 'phage display library' SubClassOf 'has grain' some 'recombinant vector' http://purl.obolibrary.org/obo/OBI_0000988 performing a diagnosis 'performing a diagnosis' SubClassOf 'has_specified_output' some 'diagnosis textual entity' 'performing a diagnosis' SubClassOf 'data transformation' http://purl.obolibrary.org/obo/OBI_0000991 Edinburgh score 'Edinburgh score' SubClassOf 'is_specified_output_of' some 'Edinburgh handedness assay' http://purl.obolibrary.org/obo/OBI_0200161 quantile number of false positives correction method 'quantile number of false positives correction method' SubClassOf http://purl.obolibrary.org/obo/APOLLO_SV_00000796 http://purl.obolibrary.org/obo/OBI_0200164 proportion of expected false positives correction method 'proportion of expected false positives correction method' SubClassOf http://purl.obolibrary.org/obo/APOLLO_SV_00000796 http://purl.obolibrary.org/obo/OBI_0200163 false discovery rate correction method 'false discovery rate correction method' SubClassOf http://purl.obolibrary.org/obo/APOLLO_SV_00000796 http://purl.obolibrary.org/obo/OBI_0200165 quantile proportion of false positives correction method 'quantile proportion of false positives correction method' SubClassOf http://purl.obolibrary.org/obo/APOLLO_SV_00000796 http://purl.obolibrary.org/obo/OBI_0001603 binding off rate measurement datum (koff) 'binding off rate measurement datum (koff)' SubClassOf 'binding constant' and ('rate measurement datum' and ('is about' some 'binding')) http://purl.obolibrary.org/obo/OBI_0001605 binding on rate measurement datum (kon) 'binding on rate measurement datum (kon)' SubClassOf 'binding constant' and ('rate measurement datum' and ('is about' some 'binding')) http://purl.obolibrary.org/obo/OBI_0200169 normalization data transformation 'normalization data transformation' SubClassOf http://purl.obolibrary.org/obo/APOLLO_SV_00000796 http://purl.obolibrary.org/obo/OBI_0000944 handedness assay 'handedness assay' SubClassOf 'assay' 'handedness assay' EquivalentTo 'assay' and ('has_specified_output' some ('measurement datum' and ('is about' some 'handedness'))) http://purl.obolibrary.org/obo/OBI_0000701 self-organizing map 'self-organizing map' SubClassOf http://purl.obolibrary.org/obo/APOLLO_SV_00000796 http://purl.obolibrary.org/obo/OBI_0000711 library preparation 'library preparation' SubClassOf 'achieves_planned_objective' some 'material transformation objective' 'library preparation' SubClassOf 'has_specified_output' some ('cDNA library' or 'paired-end library' or 'single fragment library' or 'phage display library') 'library preparation' SubClassOf 'has_specified_input' some ('deoxyribonucleic acid' or 'double-stranded DNA') 'library preparation' SubClassOf 'material processing' http://purl.obolibrary.org/obo/OBI_0000951 compound treatment design 'compound treatment design' EquivalentTo 'study design' and ('has part' some ('study design independent variable' and ('is about' some ('study intervention' and 'administration of material to specimen')))) 'compound treatment design' SubClassOf 'has part' some ('study design independent variable' and ('is about' some ('study intervention' and 'administration of material to specimen'))) http://purl.obolibrary.org/obo/CHEBI_33697 ribonucleic acid 'ribonucleic acid' SubClassOf 'nucleic acid' http://purl.obolibrary.org/obo/OBI_0200120 variance calculation 'variance calculation' SubClassOf 'descriptive statistical calculation data transformation' http://purl.obolibrary.org/obo/OBI_0000713 GenePattern software 'GenePattern software' SubClassOf 'software' http://purl.obolibrary.org/obo/OBI_0200122 interquartile-range calculation 'interquartile-range calculation' SubClassOf 'descriptive statistical calculation data transformation' http://purl.obolibrary.org/obo/OBI_0200121 standard deviation calculation 'standard deviation calculation' SubClassOf 'descriptive statistical calculation data transformation' http://purl.obolibrary.org/obo/OBI_0200124 kurtosis calculation 'kurtosis calculation' SubClassOf 'descriptive statistical calculation data transformation' http://purl.obolibrary.org/obo/OBI_0200123 skewness calculation 'skewness calculation' SubClassOf 'descriptive statistical calculation data transformation' 'skewness calculation' SubClassOf http://purl.obolibrary.org/obo/APOLLO_SV_00000796 http://purl.obolibrary.org/obo/OBI_0000722 paired-end library 'paired-end library' SubClassOf 'processed material' http://purl.obolibrary.org/obo/OBI_0000727 k-nearest neighbors 'k-nearest neighbors' SubClassOf http://purl.obolibrary.org/obo/APOLLO_SV_00000796 http://purl.obolibrary.org/obo/OBI_0200113 similarity calculation 'similarity calculation' SubClassOf http://purl.obolibrary.org/obo/APOLLO_SV_00000796 http://purl.obolibrary.org/obo/OBI_0200117 mode calculation 'mode calculation' SubClassOf 'descriptive statistical calculation data transformation' 'mode calculation' SubClassOf http://purl.obolibrary.org/obo/APOLLO_SV_00000796 http://purl.obolibrary.org/obo/OBI_0200119 median calculation 'median calculation' SubClassOf 'descriptive statistical calculation data transformation' 'median calculation' SubClassOf http://purl.obolibrary.org/obo/APOLLO_SV_00000796 http://purl.obolibrary.org/obo/IAO_0000098 data format specification 'data format specification' SubClassOf 'directive information entity' http://www.geneontology.org/formats/oboInOwl#SynonymType http://www.geneontology.org/formats/oboInOwl#SynonymType SubClassOf 'data about an ontology part' http://purl.obolibrary.org/obo/BFO_0000141 immaterial entity 'material entity' DisjointWith 'immaterial entity' http://purl.obolibrary.org/obo/OBI_0000094 material processing 'material processing' SubClassOf 'has_specified_output' only 'material entity' 'material processing' SubClassOf 'has_specified_input' some 'material entity' http://purl.obolibrary.org/obo/OBI_0001182 negative binding datum 'negative binding datum' SubClassOf 'binding datum' 'negative binding datum' SubClassOf http://purl.obolibrary.org/obo/OBI_0003141 http://www.geneontology.org/formats/oboInOwl#Subset http://www.geneontology.org/formats/oboInOwl#Subset EquivalentTo {'core'} http://www.geneontology.org/formats/oboInOwl#Subset SubClassOf 'data about an ontology part' http://purl.obolibrary.org/obo/OBI_0200198 tandem mass spectrometry 'tandem mass spectrometry' SubClassOf 'achieves_planned_objective' some 'spectrum analysis objective' 'tandem mass spectrometry' SubClassOf 'mass spectrometry analysis' http://purl.obolibrary.org/obo/OBI_0001028 feature extraction 'feature extraction' SubClassOf 'data transformation in statistics' 'feature extraction' SubClassOf 'data transformation' http://purl.obolibrary.org/obo/OBCS_0000011 measurement scale 'measurement scale' SubClassOf 'is about' some 'measurement datum' http://purl.obolibrary.org/obo/OBCS_0000015 central tendency 'central tendency' SubClassOf 'data set of features' http://purl.obolibrary.org/obo/OBCS_0000248 Receiver operating characteristic curve analysis 'Receiver operating characteristic curve analysis' SubClassOf http://purl.obolibrary.org/obo/APOLLO_SV_00000796 http://purl.obolibrary.org/obo/PR_000000001 protein 'protein' SubClassOf 'peptide' http://purl.obolibrary.org/obo/IAO_0000109 measurement datum 'measurement datum' SubClassOf 'has value specification' some 'value specification' http://purl.obolibrary.org/obo/OBCS_0000219 derived data from descriptive statistical analysis 'derived data from descriptive statistical analysis' SubClassOf 'transformed data set' http://purl.obolibrary.org/obo/OBI_0001001 Edinburgh handedness assay 'Edinburgh handedness assay' SubClassOf 'handedness assay' 'Edinburgh handedness assay' SubClassOf 'has_specified_input' value 'Edingburgh handedness inventory' 'Edinburgh handedness assay' SubClassOf 'has_specified_output' some 'Edinburgh score' http://purl.obolibrary.org/obo/OBI_0001000 questionnaire 'questionnaire' SubClassOf 'document' http://purl.obolibrary.org/obo/OBI_0000164 cDNA library 'cDNA library' SubClassOf 'recombinant vector' 'cDNA library' SubClassOf 'is_specified_output_of' some 'recombinant vector cloning' 'cDNA library' SubClassOf 'has grain' some 'recombinant vector' http://purl.obolibrary.org/obo/OBCS_0000222 normal distribution transformation 'normal distribution transformation' SubClassOf http://purl.obolibrary.org/obo/APOLLO_SV_00000796 http://purl.obolibrary.org/obo/IAO_0000144 conclusion textual entity 'conclusion textual entity' SubClassOf 'is_supported_by_data' some 'data item' 'conclusion textual entity' SubClassOf 'conclusion based on data' 'conclusion textual entity' SubClassOf 'is_specified_output_of' some 'drawing a conclusion based on data' http://purl.obolibrary.org/obo/PATO_0000011 age 'age' SubClassOf 'quality of a single physical entity' 'age' SubClassOf http://purl.obolibrary.org/obo/PATO_0001018 http://purl.obolibrary.org/obo/PATO_0002201 handedness 'handedness' SubClassOf 'behavioral quality' 'handedness' SubClassOf http://purl.obolibrary.org/obo/PATO_0001995 http://purl.obolibrary.org/obo/IAO_0000579 centrally registered identifier registry 'centrally registered identifier registry' SubClassOf 'data set' http://purl.obolibrary.org/obo/PATO_0002204 ambidextrous handedness 'ambidextrous handedness' SubClassOf 'handedness' http://purl.obolibrary.org/obo/PATO_0002203 right handedness 'right handedness' SubClassOf 'handedness' http://purl.obolibrary.org/obo/PATO_0002202 left handedness 'left handedness' SubClassOf 'handedness' http://purl.obolibrary.org/obo/OBCS_0000063 random selection 'random selection' SubClassOf 'planned process' 'random selection' SubClassOf 'data collection by sampling' 'random selection' EquivalentTo 'realizes' some ('concretizes' some 'randomization sampling design') http://purl.obolibrary.org/obo/OBI_0200060 t cell epitope prediction 't cell epitope prediction' SubClassOf 'achieves_planned_objective' some 'sequence analysis objective' http://purl.obolibrary.org/obo/STATO_0000095 paired t-test 'paired t-test' SubClassOf 'statistical hypothesis test' 'paired t-test' SubClassOf http://purl.obolibrary.org/obo/STATO_0000202 http://purl.obolibrary.org/obo/OBI_0200050 dimensionality reduction 'dimensionality reduction' SubClassOf http://purl.obolibrary.org/obo/APOLLO_SV_00000796 http://purl.obolibrary.org/obo/OBI_0000626 DNA sequencing 'DNA sequencing' SubClassOf 'has participant' some 'DNA sequencer' 'DNA sequencing' EquivalentTo ('has_specified_input' some ('deoxyribonucleic acid' and ('has role' some 'evaluant role'))) and ('has_specified_output' some 'DNA sequence data') 'DNA sequencing' SubClassOf 'achieves_planned_objective' some 'assay objective' 'DNA sequencing' SubClassOf 'sequencing assay' http://purl.obolibrary.org/obo/OBI_0200056 moving average 'moving average' SubClassOf http://purl.obolibrary.org/obo/APOLLO_SV_00000796 http://purl.obolibrary.org/obo/OBI_0001959 sequencing library multiplexing 'sequencing library multiplexing' SubClassOf 'material processing' http://purl.obolibrary.org/obo/OBI_0200041 k-means clustering 'k-means clustering' SubClassOf http://purl.obolibrary.org/obo/APOLLO_SV_00000796 http://purl.obolibrary.org/obo/OBI_0200042 hierarchical clustering 'hierarchical clustering' SubClassOf http://purl.obolibrary.org/obo/APOLLO_SV_00000796 http://purl.obolibrary.org/obo/OBI_0001966 sequence library deconvolution 'sequence library deconvolution' SubClassOf 'preceded by' some ('DNA sequencing' and ('has_specified_input' some 'multiplexed sequencing library')) http://purl.obolibrary.org/obo/OBI_0001967 multiplexing sequence identifier 'multiplexing sequence identifier' SubClassOf 'is_specified_input_of' some ('library preparation' and 'sequencing library multiplexing') 'multiplexing sequence identifier' SubClassOf 'deoxyribonucleic acid' http://purl.obolibrary.org/obo/OBI_0001970 multiplexed sequencing library 'multiplexed sequencing library' SubClassOf 'is_specified_output_of' some ('library preparation' and 'sequencing library multiplexing') 'multiplexed sequencing library' SubClassOf 'processed material' 'multiplexed sequencing library' SubClassOf 'has part' some 'multiplexing sequence identifier' http://purl.obolibrary.org/obo/OBI_0000649 data set of features 'data set of features' SubClassOf 'derived data from descriptive statistical analysis' 'data set of features' EquivalentTo 'data set' and ('is_specified_output_of' some 'descriptive statistical calculation data transformation') 'data set of features' EquivalentTo 'is_specified_output_of' some 'descriptive statistical calculation data transformation' 'data set of features' SubClassOf 'derived data from statistical analysis' http://purl.obolibrary.org/obo/OBI_0600064 recombinant vector cloning 'recombinant vector cloning' SubClassOf 'has_specified_input' some ('material entity' and ('has role' some 'cloning insert role')) 'recombinant vector cloning' SubClassOf 'material processing' 'recombinant vector cloning' SubClassOf 'achieves_planned_objective' some 'material transformation objective' 'recombinant vector cloning' SubClassOf 'has_specified_output' some 'recombinant vector' 'recombinant vector cloning' SubClassOf 'realizes' some 'cloning vector role' 'recombinant vector cloning' SubClassOf 'has_specified_input' some 'cloning vector' http://purl.obolibrary.org/obo/OBI_0200000 data transformation 'data transformation' SubClassOf 'has_specified_output' some 'data item' 'data transformation' SubClassOf 'has_specified_output' only 'data item' 'data transformation' SubClassOf 'has_specified_input' some 'data item' http://purl.obolibrary.org/obo/OBI_0600047 sequencing assay 'sequencing assay' SubClassOf 'assay' 'sequencing assay' SubClassOf 'has_specified_input' some (('deoxyribonucleic acid' or 'ribonucleic acid' or 'protein') and ('has role' some 'evaluant role')) 'sequencing assay' EquivalentTo ('has_specified_output' some 'sequence data') and ('achieves_planned_objective' some 'assay objective') http://purl.obolibrary.org/obo/STATO_0000075 rarefaction curve 'rarefaction curve' SubClassOf 'line graph' http://purl.obolibrary.org/obo/CHEBI_4705 double-stranded DNA 'double-stranded DNA' SubClassOf 'deoxyribonucleic acid' http://purl.obolibrary.org/obo/BFO_0000006 spatial region 'spatial region' DisjointWith http://purl.obolibrary.org/obo/BFO_0000140 'spatial region' DisjointWith http://purl.obolibrary.org/obo/BFO_0000029 http://purl.obolibrary.org/obo/BFO_0000003 occurrent 'occurrent' DisjointWith 'part of' some 'continuant' 'continuant' DisjointWith 'occurrent' http://purl.obolibrary.org/obo/BFO_0000004 independent continuant 'independent continuant' DisjointWith 'specifically dependent continuant' 'independent continuant' DisjointWith 'generically dependent continuant' http://purl.obolibrary.org/obo/BFO_0000009 two-dimensional spatial region 'two-dimensional spatial region' DisjointWith 'three-dimensional spatial region' http://purl.obolibrary.org/obo/BFO_0000002 continuant 'continuant' DisjointWith 'part of' some 'occurrent' 'continuant' DisjointWith 'occurrent' http://purl.obolibrary.org/obo/BFO_0000028 three-dimensional spatial region 'two-dimensional spatial region' DisjointWith 'three-dimensional spatial region' 'one-dimensional spatial region' DisjointWith 'three-dimensional spatial region' 'zero-dimensional spatial region' DisjointWith 'three-dimensional spatial region' http://purl.obolibrary.org/obo/BFO_0000026 one-dimensional spatial region 'one-dimensional spatial region' DisjointWith 'three-dimensional spatial region' http://purl.obolibrary.org/obo/BFO_0000031 generically dependent continuant 'independent continuant' DisjointWith 'generically dependent continuant' 'specifically dependent continuant' DisjointWith 'generically dependent continuant' http://purl.obolibrary.org/obo/BFO_0000035 process boundary http://purl.obolibrary.org/obo/BFO_0000008 DisjointWith 'process boundary' http://purl.obolibrary.org/obo/BFO_0000016 disposition 'disposition' DisjointWith 'role' http://purl.obolibrary.org/obo/BFO_0000017 realizable entity 'realizable entity' DisjointWith 'quality' http://purl.obolibrary.org/obo/BFO_0000015 process http://purl.obolibrary.org/obo/BFO_0000008 DisjointWith 'process' http://purl.obolibrary.org/obo/BFO_0000018 zero-dimensional spatial region 'zero-dimensional spatial region' DisjointWith 'three-dimensional spatial region' http://purl.obolibrary.org/obo/BFO_0000019 quality 'realizable entity' DisjointWith 'quality' http://purl.obolibrary.org/obo/BFO_0000020 specifically dependent continuant 'independent continuant' DisjointWith 'specifically dependent continuant' 'specifically dependent continuant' DisjointWith 'generically dependent continuant' http://purl.obolibrary.org/obo/OBI_0400103 DNA sequencer 'DNA sequencer' SubClassOf 'has function' some 'measure function' 'DNA sequencer' SubClassOf 'measurement device' http://purl.obolibrary.org/obo/BFO_0000023 role 'disposition' DisjointWith 'role' http://purl.obolibrary.org/obo/OBI_0200097 non-negative matrix factorization 'non-negative matrix factorization' SubClassOf 'data transformation in statistics' 'non-negative matrix factorization' SubClassOf 'data transformation' http://purl.obolibrary.org/obo/OBI_0200099 discriminant function analysis 'discriminant function analysis' SubClassOf http://purl.obolibrary.org/obo/APOLLO_SV_00000796 http://purl.obolibrary.org/obo/OBI_0200073 family wise error rate correction method 'family wise error rate correction method' SubClassOf http://purl.obolibrary.org/obo/APOLLO_SV_00000796 http://purl.obolibrary.org/obo/OBI_0200079 mean calculation 'mean calculation' SubClassOf 'descriptive statistical calculation data transformation' 'mean calculation' SubClassOf http://purl.obolibrary.org/obo/APOLLO_SV_00000796 http://purl.obolibrary.org/obo/OBCS_0000371 highest uncertainty degree 'highest uncertainty degree' SubClassOf 'uncertainty degree level' http://purl.obolibrary.org/obo/OBI_0002475 number of PCR cycles during library construction 'number of PCR cycles during library construction' SubClassOf 'data item' http://purl.obolibrary.org/obo/OBCS_0000372 very high uncertainty level 'very high uncertainty level' SubClassOf 'uncertainty degree level' http://purl.obolibrary.org/obo/OBI_0002476 number of rounds of amplification 'number of rounds of amplification' SubClassOf 'data item' http://purl.obolibrary.org/obo/OBCS_0000370 intermediate certainty level 'intermediate certainty level' SubClassOf 'uncertainty degree level' http://purl.obolibrary.org/obo/OBCS_0000375 uncertainty quantification 'uncertainty quantification' SubClassOf 'planned process' http://purl.obolibrary.org/obo/OBI_0002479 sequence read length measurement datum 'sequence read length measurement datum' SubClassOf 'measurement datum' http://purl.obolibrary.org/obo/OBI_0003327 image data set 'image data set' SubClassOf 'data set' 'image data set' SubClassOf 'is about' some 'entity' http://purl.obolibrary.org/obo/OBCS_0000373 low uncertainty level 'low uncertainty level' SubClassOf 'uncertainty degree level' http://purl.obolibrary.org/obo/OBI_0003329 magnetic resonance imaging participant 'magnetic resonance imaging participant' EquivalentTo 'material entity' and ('has characteristic' some 'magnetic resonance imaging evaluant role') 'magnetic resonance imaging participant' SubClassOf 'material entity' http://purl.obolibrary.org/obo/OBCS_0000374 very low uncertainty level 'very low uncertainty level' SubClassOf 'uncertainty degree level' http://purl.obolibrary.org/obo/OBI_0003328 magnetic resonance image data set 'magnetic resonance image data set' EquivalentTo 'image data set' and ('is about' some 'magnetic resonance imaging participant') 'magnetic resonance image data set' SubClassOf 'image data set' http://purl.obolibrary.org/obo/OBI_0002471 date process started 'date process started' SubClassOf 'data item' http://purl.obolibrary.org/obo/OBCS_0000360 proprietary uncertainty 'proprietary uncertainty' SubClassOf 'uncertainty' http://purl.obolibrary.org/obo/OBI_0003334 reconstructed magnetic resonance image data set 'reconstructed magnetic resonance image data set' SubClassOf 'magnetic resonance image data set' 'reconstructed magnetic resonance image data set' SubClassOf 'computed image data set' 'reconstructed magnetic resonance image data set' EquivalentTo 'computed image data set' and ('is about' some 'magnetic resonance imaging participant') http://purl.obolibrary.org/obo/OBI_0003576 skin of body microbiology assay 'skin of body microbiology assay' SubClassOf ('realizes' some ('evaluant role' and ('role of' some 'skin of body specimen'))) and ('has_specified_input' some ('skin of body specimen' and ('has role' some 'evaluant role'))) 'skin of body microbiology assay' SubClassOf 'organism detection assay' 'skin of body microbiology assay' SubClassOf 'has_specified_output' some ('is about' some 'organism') 'skin of body microbiology assay' SubClassOf 'has_specified_output' some 'data item' 'skin of body microbiology assay' SubClassOf 'has_specified_input' some 'skin of body specimen' 'skin of body microbiology assay' SubClassOf ('realizes' some ('measurand role' and ('characteristic of' some 'organism'))) and ('has_specified_input' some 'organism') http://purl.obolibrary.org/obo/OBCS_0000361 situational uncertainty 'situational uncertainty' SubClassOf 'uncertainty' http://purl.obolibrary.org/obo/OBI_0003333 computed image data set 'computed image data set' SubClassOf 'transformed data set' 'computed image data set' EquivalentTo 'image data set' and ('is_specified_output_of' some 'image data set analysis') 'computed image data set' SubClassOf 'image data set' http://purl.obolibrary.org/obo/OBI_0003578 bone marrow microbiology assay 'bone marrow microbiology assay' SubClassOf ('realizes' some ('measurand role' and ('characteristic of' some 'organism'))) and ('has_specified_input' some 'organism') 'bone marrow microbiology assay' SubClassOf 'has_specified_input' some 'bone marrow specimen' 'bone marrow microbiology assay' SubClassOf 'organism detection assay' 'bone marrow microbiology assay' SubClassOf 'has_specified_output' some ('is about' some 'organism') 'bone marrow microbiology assay' SubClassOf ('realizes' some ('evaluant role' and ('role of' some 'bone marrow specimen'))) and ('has_specified_input' some ('bone marrow specimen' and ('has role' some 'evaluant role'))) 'bone marrow microbiology assay' SubClassOf 'has_specified_output' some 'data item' http://purl.obolibrary.org/obo/OBI_0003577 skin of body microbiology datum 'skin of body microbiology datum' EquivalentTo 'organism detection datum' and ('is_specified_output_of' some 'skin of body microbiology assay') 'skin of body microbiology datum' SubClassOf 'organism detection datum' http://purl.obolibrary.org/obo/OBCS_0000364 uncertainty about gender role 'uncertainty about gender role' SubClassOf 'identity uncertainty' http://purl.obolibrary.org/obo/OBCS_0000365 uncertainty about long-term goal 'uncertainty about long-term goal' SubClassOf 'identity uncertainty' http://purl.obolibrary.org/obo/OBI_0003579 bone marrow microbiology datum 'bone marrow microbiology datum' SubClassOf 'organism detection datum' 'bone marrow microbiology datum' EquivalentTo 'organism detection datum' and ('is_specified_output_of' some 'bone marrow microbiology assay') http://purl.obolibrary.org/obo/UBERON_0001359 cerebrospinal fluid 'cerebrospinal fluid' SubClassOf 'transudate' http://purl.obolibrary.org/obo/OBCS_0000362 psychological uncertainty 'psychological uncertainty' SubClassOf 'subjective uncertainty' http://purl.obolibrary.org/obo/OBCS_0000363 identity uncertainty 'identity uncertainty' SubClassOf 'subjective uncertainty' http://purl.obolibrary.org/obo/OBCS_0000368 definitive certainty level 'definitive certainty level' SubClassOf 'uncertainty degree level' http://purl.obolibrary.org/obo/OBCS_0000369 high certainty level 'high certainty level' SubClassOf 'uncertainty degree level' http://purl.obolibrary.org/obo/OBCS_0000366 uncertainty about value system 'uncertainty about value system' SubClassOf 'identity uncertainty' http://purl.obolibrary.org/obo/OBI_0002480 sequencing library input quantity measurement datum 'sequencing library input quantity measurement datum' SubClassOf 'scalar measurement datum' http://purl.obolibrary.org/obo/OBCS_0000367 uncertainty degree level 'uncertainty degree level' SubClassOf 'data item' http://purl.obolibrary.org/obo/OBI_0002482 specimen harvest quantity 'specimen harvest quantity' SubClassOf 'measurement datum' http://purl.obolibrary.org/obo/OBI_0003330 magnetic resonance imaging evaluant role 'magnetic resonance imaging evaluant role' SubClassOf 'evaluant role' 'magnetic resonance imaging evaluant role' EquivalentTo 'evaluant role' and ('realized in' some 'magnetic resonance imaging assay') http://purl.obolibrary.org/obo/OBI_0002483 spike-in dilution factor 'spike-in dilution factor' SubClassOf 'data item' http://purl.obolibrary.org/obo/OBI_0003332 magnetic resonance pulse sequence protocol 'magnetic resonance pulse sequence protocol' SubClassOf 'protocol' http://purl.obolibrary.org/obo/OBI_0003331 raw image data set 'raw image data set' SubClassOf 'image data set' http://purl.obolibrary.org/obo/OBI_0003581 nasal aspirate microbiology datum 'nasal aspirate microbiology datum' SubClassOf 'organism detection datum' 'nasal aspirate microbiology datum' EquivalentTo 'organism detection datum' and ('is_specified_output_of' some 'nasal aspirate microbiology assay') http://purl.obolibrary.org/obo/OBI_0003580 nasal aspirate microbiology assay 'nasal aspirate microbiology assay' SubClassOf ('realizes' some ('measurand role' and ('characteristic of' some 'organism'))) and ('has_specified_input' some 'organism') 'nasal aspirate microbiology assay' SubClassOf ('realizes' some ('evaluant role' and ('role of' some 'nasal aspirate specimen'))) and ('has_specified_input' some ('nasal aspirate specimen' and ('has role' some 'evaluant role'))) 'nasal aspirate microbiology assay' SubClassOf 'has_specified_output' some ('is about' some 'organism') 'nasal aspirate microbiology assay' SubClassOf 'organism detection assay' 'nasal aspirate microbiology assay' SubClassOf 'has_specified_output' some 'data item' 'nasal aspirate microbiology assay' SubClassOf 'has_specified_input' some 'nasal aspirate specimen' http://purl.obolibrary.org/obo/OBI_0000079 culture medium 'culture medium' SubClassOf 'processed material' http://purl.obolibrary.org/obo/OBI_0003356 raw magnetic resonance image data set reconstruction 'raw magnetic resonance image data set reconstruction' SubClassOf 'dataset creating' 'raw magnetic resonance image data set reconstruction' SubClassOf 'image data set analysis' 'raw magnetic resonance image data set reconstruction' EquivalentTo 'image data set analysis' and ('has_specified_input' some 'raw magnetic resonance image data set') and ('has_specified_output' some 'reconstructed magnetic resonance image data set') http://purl.obolibrary.org/obo/OBI_0003355 image data set analysis 'image data set analysis' SubClassOf 'has_specified_input' some 'image data set' 'image data set analysis' SubClassOf 'data transformation' http://purl.obolibrary.org/obo/OBI_0003592 sequential organ failure assessment score 'sequential organ failure assessment score' SubClassOf 'clinical data item' http://purl.obolibrary.org/obo/OBI_0003591 chronic allograft damage index score 'chronic allograft damage index score' SubClassOf 'is about' some 'specimen' 'chronic allograft damage index score' SubClassOf 'clinical data item' http://purl.obolibrary.org/obo/OBI_0002020 epigenetic modification assay 'epigenetic modification assay' EquivalentTo 'assay' and ('achieves_planned_objective' some 'epigenetic modification identification objective') 'epigenetic modification assay' SubClassOf 'assay' http://purl.obolibrary.org/obo/OBI_0003594 human leukocyte antigen mismatch count 'human leukocyte antigen mismatch count' SubClassOf 'genetic characteristics information' http://purl.obolibrary.org/obo/OBI_0003593 physician's global assessment of disease activity 'physician's global assessment of disease activity' SubClassOf 'is about' some 'disease course' 'physician's global assessment of disease activity' SubClassOf 'clinical data item' http://purl.obolibrary.org/obo/OBI_0003354 raw magnetic resonance image data set 'raw magnetic resonance image data set' SubClassOf 'raw image data set' 'raw magnetic resonance image data set' EquivalentTo 'raw image data set' and ('is about' some 'magnetic resonance imaging participant') and ('is_specified_output_of' some 'magnetic resonance imaging assay') 'raw magnetic resonance image data set' SubClassOf 'magnetic resonance image data set' http://purl.obolibrary.org/obo/OBCS_0000331 technical uncertainty 'technical uncertainty' SubClassOf 'objective uncertainty' http://purl.obolibrary.org/obo/OBCS_0000332 prognosis uncertainty 'prognosis uncertainty' SubClassOf 'subjective uncertainty' http://purl.obolibrary.org/obo/OBCS_0000330 organizational uncertainty 'organizational uncertainty' SubClassOf 'subjective uncertainty' http://purl.obolibrary.org/obo/OBCS_0000335 moderate degree of certainty 'moderate degree of certainty' SubClassOf 'uncertainty' http://purl.obolibrary.org/obo/OBCS_0000336 detrimental uncertainty 'detrimental uncertainty' SubClassOf 'uncertainty' http://purl.obolibrary.org/obo/OBCS_0000333 positive or neutral certainty 'positive or neutral certainty' SubClassOf 'uncertainty' http://purl.obolibrary.org/obo/OBCS_0000334 detrimental certainty 'detrimental certainty' SubClassOf 'uncertainty' http://purl.obolibrary.org/obo/OBI_0000257 DNA extraction 'DNA extraction' SubClassOf 'nucleic acid extraction' 'DNA extraction' SubClassOf 'has_specified_output' some 'DNA extract' http://purl.obolibrary.org/obo/OBCS_0000339 statistical uncertainty 'statistical uncertainty' SubClassOf 'objective uncertainty' http://purl.obolibrary.org/obo/OBCS_0000337 positive uncertainty 'positive uncertainty' SubClassOf 'uncertainty' http://purl.obolibrary.org/obo/OBCS_0000338 determinism 'determinism' SubClassOf 'uncertainty' http://purl.obolibrary.org/obo/IAO_0000057 contour plot 'contour plot' SubClassOf 'graph' http://purl.obolibrary.org/obo/OBI_0002444 measurand role 'measurand role' SubClassOf 'role' 'measurand role' SubClassOf 'role of' some 'material entity' http://purl.obolibrary.org/obo/OBCS_0000320 behavioural variability 'behavioural variability' SubClassOf 'uncertainty arise condition' http://purl.obolibrary.org/obo/OBCS_0000321 societal variability 'societal variability' SubClassOf 'uncertainty arise condition' http://purl.obolibrary.org/obo/BFO_0000038 one-dimensional temporal region 'one-dimensional temporal region' SubClassOf 'temporal region' 'one-dimensional temporal region' DisjointWith 'zero-dimensional temporal region' http://purl.obolibrary.org/obo/OBCS_0000324 probability 'probability' SubClassOf 'uncertainty' http://purl.obolibrary.org/obo/OBCS_0000325 complexity-induced uncertainty 'complexity-induced uncertainty' SubClassOf 'subjective uncertainty' http://purl.obolibrary.org/obo/OBCS_0000322 technological surprise 'technological surprise' SubClassOf 'uncertainty arise condition' http://purl.obolibrary.org/obo/OBCS_0000323 sampling error in the measurement 'sampling error in the measurement' SubClassOf 'uncertainty arise condition' http://purl.obolibrary.org/obo/OBCS_0000328 taxonomic uncertainty 'taxonomic uncertainty' SubClassOf 'objective uncertainty' http://purl.obolibrary.org/obo/OBCS_0000329 diagnostic uncertainty 'diagnostic uncertainty' SubClassOf 'subjective uncertainty' http://purl.obolibrary.org/obo/UBERON_0013522 subdivision of tube 'subdivision of tube' SubClassOf 'organ part' http://purl.obolibrary.org/obo/OBCS_0000326 vagueness 'vagueness' SubClassOf 'uncertainty' http://purl.obolibrary.org/obo/OBCS_0000327 ambiguity 'ambiguity' SubClassOf 'subjective uncertainty' http://purl.obolibrary.org/obo/OBCS_0000319 inherent randomness of nature 'inherent randomness of nature' SubClassOf 'uncertainty arise condition' http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity 'material anatomical entity' SubClassOf 'material entity' http://purl.obolibrary.org/obo/UBERON_0000463 organism substance 'organism substance' SubClassOf 'material anatomical entity' http://purl.obolibrary.org/obo/OBCS_0000350 input uncertainty 'input uncertainty' SubClassOf 'uncertainty' http://purl.obolibrary.org/obo/UBERON_0000479 tissue 'tissue' SubClassOf 'multicellular anatomical structure' http://purl.obolibrary.org/obo/OBCS_0000353 parameters uncertainty 'parameters uncertainty' SubClassOf 'objective uncertainty' http://purl.obolibrary.org/obo/OBCS_0000354 model outcome uncertainty 'model outcome uncertainty' SubClassOf 'uncertainty' http://purl.obolibrary.org/obo/OBCS_0000351 external driving forces uncertainty 'external driving forces uncertainty' SubClassOf 'input uncertainty' http://purl.obolibrary.org/obo/OBCS_0000352 system data uncertainty 'system data uncertainty' SubClassOf 'input uncertainty' http://purl.obolibrary.org/obo/OBCS_0000357 moral uncertainty 'moral uncertainty' SubClassOf 'uncertainty' http://purl.obolibrary.org/obo/OBCS_0000358 societal uncertainty 'societal uncertainty' SubClassOf 'uncertainty' http://purl.obolibrary.org/obo/OBCS_0000355 scientific uncertainty 'scientific uncertainty' SubClassOf 'uncertainty' http://purl.obolibrary.org/obo/OBCS_0000356 legal uncertainty 'legal uncertainty' SubClassOf 'uncertainty' http://purl.obolibrary.org/obo/OBCS_0000359 institutional uncertainty 'institutional uncertainty' SubClassOf 'societal uncertainty' http://purl.obolibrary.org/obo/UBERON_0000477 anatomical cluster 'anatomical cluster' SubClassOf 'material anatomical entity' http://purl.obolibrary.org/obo/OBI_0002465 age since culture seeding measurement datum 'age since culture seeding measurement datum' SubClassOf 'age measurement datum' http://purl.obolibrary.org/obo/OBCS_0000342 recognized ignorance 'recognized ignorance' SubClassOf 'uncertainty' http://purl.obolibrary.org/obo/OBCS_0000343 reducible ignorance 'reducible ignorance' SubClassOf 'recognized ignorance' http://purl.obolibrary.org/obo/OBCS_0000340 measurement uncertainty 'measurement uncertainty' SubClassOf 'statistical uncertainty' http://purl.obolibrary.org/obo/OBCS_0000341 scenario uncertainty 'scenario uncertainty' SubClassOf 'uncertainty' http://purl.obolibrary.org/obo/OBCS_0000346 context uncertainty 'context uncertainty' SubClassOf 'objective uncertainty' http://purl.obolibrary.org/obo/OBCS_0000347 model uncertainty 'model uncertainty' SubClassOf 'subjective uncertainty' http://purl.obolibrary.org/obo/OBCS_0000344 irreducible ignorance 'irreducible ignorance' SubClassOf 'recognized ignorance' http://purl.obolibrary.org/obo/OBCS_0000345 total ignorance 'total ignorance' SubClassOf 'uncertainty' http://purl.obolibrary.org/obo/OBCS_0000348 model structure uncertainty 'model structure uncertainty' SubClassOf 'model uncertainty' http://purl.obolibrary.org/obo/OBCS_0000349 model technical uncertainty 'model technical uncertainty' SubClassOf 'model uncertainty' http://purl.obolibrary.org/obo/CL_0000578 experimentally modified cell in vitro 'experimentally modified cell in vitro' SubClassOf 'cell in vitro' http://purl.obolibrary.org/obo/OBI_0002649 blood microbiology assay 'blood microbiology assay' SubClassOf 'blood assay' 'blood microbiology assay' SubClassOf 'has_specified_output' some 'data item' 'blood microbiology assay' SubClassOf 'has_specified_output' some ('is about' some 'organism') 'blood microbiology assay' SubClassOf ('realizes' some ('evaluant role' and ('role of' some 'blood specimen'))) and ('has_specified_input' some ('blood specimen' and ('has role' some 'evaluant role'))) 'blood microbiology assay' SubClassOf 'has_specified_input' some 'blood specimen' 'blood microbiology assay' SubClassOf ('realizes' some ('measurand role' and ('characteristic of' some 'organism'))) and ('has_specified_input' some 'organism') 'blood microbiology assay' SubClassOf 'organism detection assay' http://purl.obolibrary.org/obo/UBERON_0002048 lung 'lung' SubClassOf 'organ' 'lung' SubClassOf 'endoderm-derived structure' http://purl.obolibrary.org/obo/OBI_0002650 biopsy 'biopsy' SubClassOf 'collecting specimen from organism' 'biopsy' SubClassOf 'has_specified_input' some 'material anatomical entity' 'biopsy' SubClassOf 'has_specified_output' some 'pre-mortem specimen' 'biopsy' SubClassOf 'has_specified_input' some 'device' http://purl.obolibrary.org/obo/OBI_0002662 bone marrow biopsy 'bone marrow biopsy' SubClassOf 'biopsy' 'bone marrow biopsy' SubClassOf 'has_specified_input' some 'bone marrow' http://purl.obolibrary.org/obo/OBI_0100060 cultured cell population 'cultured cell population' SubClassOf 'has grain' some 'cultured cell' 'cultured cell population' SubClassOf 'processed material' 'cultured cell population' SubClassOf 'is_specified_output_of' some 'maintaining cell culture' 'cultured cell population' SubClassOf 'has grain' only 'cultured cell' http://purl.obolibrary.org/obo/OBI_0000655 blood specimen 'blood specimen' SubClassOf 'is_specified_output_of' some 'collecting specimen from organism' 'blood specimen' SubClassOf 'derives from' some 'blood' 'blood specimen' SubClassOf 'bodily fluid specimen' 'blood specimen' SubClassOf 'has role' some 'specimen role' http://purl.obolibrary.org/obo/PATO_0001018 physical quality 'physical quality' SubClassOf 'physical object quality' http://purl.obolibrary.org/obo/PATO_0000169 viability 'viability' SubClassOf 'organismal quality' http://purl.obolibrary.org/obo/OBI_0000651 urine specimen 'urine specimen' SubClassOf 'derives from' some 'urine' 'urine specimen' SubClassOf 'is_specified_output_of' some 'collecting specimen from organism' 'urine specimen' SubClassOf 'has role' some 'specimen role' 'urine specimen' SubClassOf 'specimen from organism' http://purl.obolibrary.org/obo/OBI_0000650 differential expression analysis data transformation 'differential expression analysis data transformation' EquivalentTo 'achieves_planned_objective' some 'differential expression analysis objective' 'differential expression analysis data transformation' SubClassOf 'data transformation' http://purl.obolibrary.org/obo/OBI_0001506 specimen with pre- or post-mortem status 'specimen with pre- or post-mortem status' EquivalentTo 'is_specified_output_of' some ('specimen collection process' and ('has_specified_input' some ('organism' and ('has quality' some ('alive' or 'dead'))))) 'specimen with pre- or post-mortem status' SubClassOf 'specimen' http://purl.obolibrary.org/obo/STATO_0000202 within subject comparison statistical test 'within subject comparison statistical test' SubClassOf 'statistical hypothesis test' http://purl.obolibrary.org/obo/OBI_0002600 collecting specimen with swab 'collecting specimen with swab' SubClassOf 'specimen collection process' http://purl.obolibrary.org/obo/OBI_0002601 demultiplexed sequence data 'demultiplexed sequence data' SubClassOf 'sequence data' http://purl.obolibrary.org/obo/OBI_0002602 multiplexed sequence data 'multiplexed sequence data' SubClassOf 'sequence data' http://purl.obolibrary.org/obo/OBI_0000423 extract 'extract' SubClassOf 'is_specified_output_of' some 'extraction' 'extract' SubClassOf 'processed material' http://purl.obolibrary.org/obo/UBERON_0000062 organ 'organ' SubClassOf 'multicellular anatomical structure' http://purl.obolibrary.org/obo/UBERON_0000061 anatomical structure 'anatomical structure' SubClassOf 'material anatomical entity' http://purl.obolibrary.org/obo/OBI_0002606 nasopharyngeal swab specimen 'nasopharyngeal swab specimen' SubClassOf 'swab specimen' 'nasopharyngeal swab specimen' EquivalentTo ('specimen' and ('is_specified_output_of' some 'collecting specimen with swab')) and ('specimen' and ('is_specified_output_of' some ('specimen collection process' and ('has_specified_input' some 'nasopharynx')))) http://purl.obolibrary.org/obo/UBERON_0000064 organ part 'organ part' SubClassOf 'multicellular anatomical structure' http://purl.obolibrary.org/obo/OBI_0002608 oropharyngeal swab specimen 'oropharyngeal swab specimen' EquivalentTo ('specimen' and ('is_specified_output_of' some 'collecting specimen with swab')) and ('specimen' and ('is_specified_output_of' some ('specimen collection process' and ('has_specified_input' some 'oropharynx')))) 'oropharyngeal swab specimen' SubClassOf 'swab specimen' http://purl.obolibrary.org/obo/OBI_0000678 portioning objective 'portioning objective' SubClassOf 'material separation objective' http://purl.obolibrary.org/obo/OBI_0000671 sample from organism 'sample from organism' SubClassOf 'specimen from organism' 'sample from organism' SubClassOf 'derives from' some 'material anatomical entity' 'sample from organism' SubClassOf 'material sample' 'sample from organism' EquivalentTo ('is_specified_output_of' some 'collecting specimen from organism') and ('has role' some 'material sample role') http://purl.obolibrary.org/obo/PATO_0001241 physical object quality 'physical object quality' SubClassOf 'quality' http://purl.obolibrary.org/obo/UBERON_0000072 proximo-distal subdivision of respiratory tract 'proximo-distal subdivision of respiratory tract' SubClassOf 'subdivision of tube' 'proximo-distal subdivision of respiratory tract' SubClassOf 'endoderm-derived structure' http://purl.obolibrary.org/obo/OBI_0000437 analyte measurement objective 'analyte measurement objective' SubClassOf 'assay objective' http://purl.obolibrary.org/obo/OBI_0000681 separation into different composition objective 'separation into different composition objective' SubClassOf 'material separation objective' http://purl.obolibrary.org/obo/OBI_0000443 analyte assay 'analyte assay' SubClassOf 'has_specified_output' some 'measurement datum' 'analyte assay' SubClassOf 'achieves_planned_objective' some 'analyte measurement objective' 'analyte assay' SubClassOf 'assay' http://purl.obolibrary.org/obo/OBI_0000740 material sample role 'material sample role' SubClassOf 'specimen role' http://purl.obolibrary.org/obo/CL_0001034 cell in vitro 'cell in vitro' SubClassOf 'cell' http://purl.obolibrary.org/obo/OBI_0000747 material sample 'material sample' EquivalentTo 'material entity' and ('has role' some 'material sample role') 'material sample' SubClassOf 'specimen' http://purl.obolibrary.org/obo/OGMS_0000063 disease course 'disease course' SubClassOf 'process' http://purl.obolibrary.org/obo/OGMS_0000073 diagnosis 'diagnosis' SubClassOf 'clinical data item' http://purl.obolibrary.org/obo/GO_0006306 DNA methylation 'DNA methylation' SubClassOf 'biological_process' http://purl.obolibrary.org/obo/PATO_0001421 alive 'alive' SubClassOf 'viability' http://purl.obolibrary.org/obo/PATO_0001422 dead 'dead' SubClassOf 'viability' http://purl.obolibrary.org/obo/UBERON_0007779 transudate 'transudate' SubClassOf 'bodily fluid' http://purl.obolibrary.org/obo/OBI_0000953 processed specimen 'processed specimen' EquivalentTo 'processed material' and 'specimen' 'processed specimen' SubClassOf 'processed material' 'processed specimen' SubClassOf 'specimen' http://purl.obolibrary.org/obo/UBERON_0002097 skin of body 'skin of body' SubClassOf 'organ' 'skin of body' SubClassOf 'ectoderm-derived structure' 'skin of body' SubClassOf 'protein-containing material entity' http://purl.obolibrary.org/obo/UBERON_0007311 sputum 'sputum' SubClassOf 'respiratory system fluid/secretion' http://purl.obolibrary.org/obo/PR_000050567 protein-containing material entity 'protein-containing material entity' SubClassOf 'material entity' http://purl.obolibrary.org/obo/IAO_8000020 EL++ ontology module 'EL++ ontology module' SubClassOf 'ontology module subsetted by OWL profile' http://purl.obolibrary.org/obo/BFO_0000148 zero-dimensional temporal region 'one-dimensional temporal region' DisjointWith 'zero-dimensional temporal region' 'zero-dimensional temporal region' SubClassOf 'temporal region' http://purl.obolibrary.org/obo/BFO_0000146 two-dimensional continuant fiat boundary 'two-dimensional continuant fiat boundary' SubClassOf 'continuant fiat boundary' 'one-dimensional continuant fiat boundary' DisjointWith 'two-dimensional continuant fiat boundary' http://purl.obolibrary.org/obo/BFO_0000147 zero-dimensional continuant fiat boundary 'zero-dimensional continuant fiat boundary' SubClassOf 'continuant fiat boundary' 'one-dimensional continuant fiat boundary' DisjointWith 'zero-dimensional continuant fiat boundary' http://purl.obolibrary.org/obo/BFO_0000140 continuant fiat boundary 'spatial region' DisjointWith 'continuant fiat boundary' 'continuant fiat boundary' SubClassOf 'immaterial entity' http://purl.obolibrary.org/obo/BFO_0000144 process profile 'process profile' DisjointWith 'history' 'process profile' SubClassOf 'process' http://purl.obolibrary.org/obo/IAO_0000065 software interpreter 'software interpreter' SubClassOf 'algorithm' http://purl.obolibrary.org/obo/BFO_0000145 relational quality 'relational quality' SubClassOf 'quality' http://purl.obolibrary.org/obo/BFO_0000142 one-dimensional continuant fiat boundary 'one-dimensional continuant fiat boundary' DisjointWith 'zero-dimensional continuant fiat boundary' 'one-dimensional continuant fiat boundary' DisjointWith 'two-dimensional continuant fiat boundary' 'one-dimensional continuant fiat boundary' SubClassOf 'continuant fiat boundary' http://purl.obolibrary.org/obo/OBI_0003367 diagnosis of an organism 'diagnosis of an organism' SubClassOf 'is_specified_output_of' some 'organism diagnostic process' 'diagnosis of an organism' SubClassOf 'conclusion based on data' http://purl.obolibrary.org/obo/OBI_0003366 organism diagnostic process 'organism diagnostic process' SubClassOf 'drawing a conclusion based on data' 'organism diagnostic process' SubClassOf 'has_specified_output' some 'diagnosis of an organism' http://purl.obolibrary.org/obo/UBERON_0001826 nasal cavity mucosa 'nasal cavity mucosa' SubClassOf 'endoderm-derived structure' 'nasal cavity mucosa' SubClassOf 'mucosa' 'nasal cavity mucosa' SubClassOf 'ectoderm-derived structure' http://purl.obolibrary.org/obo/OBI_0003365 milk assay datum 'milk assay datum' EquivalentTo 'data item' and ('is_specified_output_of' some 'milk assay') 'milk assay datum' SubClassOf 'data item' http://purl.obolibrary.org/obo/APOLLO_SV_00000796 dataset creating 'dataset creating' EquivalentTo 'planned process' and ('has_specified_output' some 'data set') 'dataset creating' SubClassOf 'planned process' 'dataset creating' SubClassOf 'has_specified_output' some 'data set' http://purl.obolibrary.org/obo/OBI_0003374 remote patient assessment 'remote patient assessment' SubClassOf 'organism diagnostic process' http://purl.obolibrary.org/obo/OBI_0003381 placental blood microbiology assay 'placental blood microbiology assay' SubClassOf ('realizes' some ('evaluant role' and ('role of' some 'placental blood specimen'))) and ('has_specified_input' some ('placental blood specimen' and ('has role' some 'evaluant role'))) 'placental blood microbiology assay' SubClassOf 'blood microbiology assay' http://purl.obolibrary.org/obo/OBI_0003380 placental blood specimen 'placental blood specimen' SubClassOf 'bodily fluid specimen' 'placental blood specimen' EquivalentTo ('specimen' and ('is_specified_output_of' some 'specimen collection process') and ('derives from' some 'placental blood')) and ('specimen' and ('is_specified_output_of' some 'collecting specimen from organism')) http://purl.obolibrary.org/obo/OBI_0003141 categorical binding datum 'categorical binding datum' SubClassOf 'binding datum' 'categorical binding datum' SubClassOf 'has value specification' some 'categorical value specification' http://purl.obolibrary.org/obo/OBI_0003383 eukaryota in placental blood datum 'eukaryota in placental blood datum' SubClassOf 'eukaryota in blood datum' 'eukaryota in placental blood datum' EquivalentTo 'placental blood microbiology datum' and ('is about' some 'Eukaryota') 'eukaryota in placental blood datum' SubClassOf 'placental blood microbiology datum' http://purl.obolibrary.org/obo/OBI_0003382 placental blood microbiology datum 'placental blood microbiology datum' EquivalentTo 'organism detection datum' and ('is_specified_output_of' some 'placental blood microbiology assay') 'placental blood microbiology datum' SubClassOf 'blood microbiology datum' http://purl.obolibrary.org/obo/OBI_0003143 EC50 binding datum 'EC50 binding datum' EquivalentTo 'quantitative binding datum' and ('half maximal effective concentration (EC50)' and ('is about' some 'binding')) 'EC50 binding datum' SubClassOf 'quantitative binding datum' 'EC50 binding datum' SubClassOf 'half maximal effective concentration (EC50)' http://purl.obolibrary.org/obo/OBI_0003142 quantitative binding datum 'quantitative binding datum' SubClassOf 'binding datum' http://purl.obolibrary.org/obo/OBI_0003144 IC50 binding datum 'IC50 binding datum' SubClassOf 'half maximal inhibitory concentration (IC50)' 'IC50 binding datum' EquivalentTo 'quantitative binding datum' and ('half maximal inhibitory concentration (IC50)' and ('is about' some 'binding')) 'IC50 binding datum' SubClassOf 'quantitative binding datum' http://purl.obolibrary.org/obo/IAO_8000018 obo basic subset ontology module 'obo basic subset ontology module' SubClassOf 'ontology module subsetted by expressivity' http://purl.obolibrary.org/obo/IAO_8000019 ontology module subsetted by OWL profile 'ontology module subsetted by OWL profile' SubClassOf 'ontology module subsetted by expressivity' http://purl.obolibrary.org/obo/IAO_8000016 taxonomic bridge ontology module 'taxonomic bridge ontology module' SubClassOf 'bridge ontology module' http://purl.obolibrary.org/obo/IAO_8000017 ontology module subsetted by expressivity 'ontology module subsetted by expressivity' SubClassOf 'subset ontology module' http://purl.obolibrary.org/obo/IAO_8000014 generated ontology module 'generated ontology module' SubClassOf 'ontology module' http://purl.obolibrary.org/obo/IAO_8000015 template generated ontology module 'template generated ontology module' SubClassOf 'generated ontology module' http://purl.obolibrary.org/obo/IAO_8000012 species subset ontology module 'species subset ontology module' SubClassOf 'subset ontology module' http://purl.obolibrary.org/obo/IAO_8000013 reasoned ontology module 'reasoned ontology module' SubClassOf 'ontology module' http://purl.obolibrary.org/obo/IAO_8000010 exclusion subset ontology module 'exclusion subset ontology module' SubClassOf 'subset ontology module' http://purl.obolibrary.org/obo/IAO_8000011 external import ontology module 'external import ontology module' SubClassOf 'import ontology module' http://purl.obolibrary.org/obo/IAO_8000009 single layer subset ontology module 'single layer subset ontology module' SubClassOf 'subset ontology module' http://purl.obolibrary.org/obo/IAO_8000007 curation subset ontology module 'curation subset ontology module' SubClassOf 'subset ontology module' http://purl.obolibrary.org/obo/IAO_8000008 analysis subset ontology module 'analysis subset ontology module' SubClassOf 'subset ontology module' http://purl.obolibrary.org/obo/IAO_8000005 import ontology module 'import ontology module' SubClassOf 'subset ontology module' http://purl.obolibrary.org/obo/IAO_8000006 subset ontology module 'subset ontology module' SubClassOf 'ontology module' http://purl.obolibrary.org/obo/IAO_8000003 main release ontology module 'main release ontology module' SubClassOf 'ontology module' http://purl.obolibrary.org/obo/IAO_8000004 bridge ontology module 'bridge ontology module' SubClassOf 'ontology module' http://purl.obolibrary.org/obo/IAO_8000001 base ontology module 'base ontology module' SubClassOf 'ontology module' http://purl.obolibrary.org/obo/IAO_8000002 editors ontology module 'editors ontology module' SubClassOf 'ontology module' http://purl.obolibrary.org/obo/IAO_8000000 ontology module 'ontology module' SubClassOf 'data about an ontology part' http://purl.obolibrary.org/obo/OBCS_0000251 uncertainty 'uncertainty' SubClassOf 'disposition' http://purl.obolibrary.org/obo/OBI_0002599 swab specimen 'swab specimen' SubClassOf 'specimen' 'swab specimen' EquivalentTo 'is_specified_output_of' some 'collecting specimen with swab' http://purl.obolibrary.org/obo/OBCS_0000254 subjective object 'subjective object' SubClassOf 'object' http://purl.obolibrary.org/obo/OBCS_0000255 objective process 'objective process' SubClassOf 'process' http://purl.obolibrary.org/obo/OBCS_0000252 objective uncertainty 'objective uncertainty' SubClassOf 'uncertainty' http://purl.obolibrary.org/obo/OBCS_0000253 subjective uncertainty 'subjective uncertainty' SubClassOf 'uncertainty' http://purl.obolibrary.org/obo/OBCS_0000258 uncertainty analysis 'uncertainty analysis' SubClassOf 'planned process' http://purl.obolibrary.org/obo/OBCS_0000259 sensitivity analysis 'sensitivity analysis' SubClassOf 'uncertainty analysis' http://purl.obolibrary.org/obo/OBCS_0000256 subjective process 'subjective process' SubClassOf 'process' http://purl.obolibrary.org/obo/OBCS_0000257 decision making 'decision making' SubClassOf 'subjective process' http://purl.obolibrary.org/obo/STATO_0000524 Matthews correlation coefficient 'Matthews correlation coefficient' SubClassOf 'correlation coefficient' http://purl.obolibrary.org/obo/UBERON_0001460 arm 'arm' SubClassOf 'multicellular anatomical structure' http://purl.obolibrary.org/obo/OBI_0302884 extraction 'extraction' SubClassOf 'achieves_planned_objective' some 'separation into different composition objective' 'extraction' SubClassOf 'material component separation' http://purl.obolibrary.org/obo/OBI_0000185 imaging assay 'imaging assay' SubClassOf 'assay' 'imaging assay' SubClassOf 'has_specified_output' some 'image' http://purl.obolibrary.org/obo/OBI_2000009 bodily fluid specimen 'bodily fluid specimen' EquivalentTo ('specimen' and ('is_specified_output_of' some 'specimen collection process') and ('derives from' some 'bodily fluid')) and ('specimen' and ('is_specified_output_of' some 'collecting specimen from organism')) 'bodily fluid specimen' SubClassOf 'specimen from organism' http://purl.obolibrary.org/obo/OBCS_0000272 uncertainty arise condition 'uncertainty arise condition' SubClassOf 'process' http://purl.obolibrary.org/obo/OBCS_0000273 uncertainty response activity 'uncertainty response activity' SubClassOf 'process' http://purl.obolibrary.org/obo/OBCS_0000270 critical review of assumptions in model 'critical review of assumptions in model' SubClassOf 'uncertainty analysis' http://purl.obolibrary.org/obo/OBI_0002136 RNA Integrity Number calculation 'RNA Integrity Number calculation' SubClassOf 'data transformation' 'RNA Integrity Number calculation' SubClassOf 'has_specified_output' some ('measurement datum' and ('has value specification' some 'RNA Integrity Number value specification')) http://purl.obolibrary.org/obo/OBCS_0000271 uncertainty elimination 'uncertainty elimination' SubClassOf 'process' http://purl.obolibrary.org/obo/OBI_0002137 RNA Integrity Number value specification 'RNA Integrity Number value specification' SubClassOf 'value specification' http://purl.obolibrary.org/obo/OBCS_0000276 individual difference 'individual difference' SubClassOf 'uncertainty arise condition' http://purl.obolibrary.org/obo/OBCS_0000277 material difficult to obtain 'material difficult to obtain' SubClassOf 'uncertainty arise condition' http://purl.obolibrary.org/obo/OBCS_0000274 rarity of event 'rarity of event' SubClassOf 'uncertainty arise condition' http://purl.obolibrary.org/obo/OBCS_0000275 multiple effects from single cause 'multiple effects from single cause' SubClassOf 'uncertainty arise condition' http://purl.obolibrary.org/obo/OBCS_0000278 instability of event (episodic, self-reversing, spreading) 'instability of event (episodic, self-reversing, spreading)' SubClassOf 'uncertainty arise condition' http://purl.obolibrary.org/obo/OBCS_0000279 partially available data 'partially available data' SubClassOf 'uncertainty arise condition' http://purl.obolibrary.org/obo/OBI_0002371 diagnosis of cancer 'diagnosis of cancer' SubClassOf 'diagnosis' http://purl.obolibrary.org/obo/OBCS_0000261 global sensitivity analysis 'global sensitivity analysis' SubClassOf 'sensitivity analysis' http://purl.obolibrary.org/obo/OBI_0002145 antigen specific antibodies assay 'antigen specific antibodies assay' SubClassOf 'analyte assay' http://purl.obolibrary.org/obo/OBI_0002387 diagnosis of hepatitis C 'diagnosis of hepatitis C' SubClassOf 'diagnosis of infectious disease' http://purl.obolibrary.org/obo/OBI_0003235 lung assay 'lung assay' SubClassOf 'assay' 'lung assay' EquivalentTo 'assay' and (('realizes' some ('evaluant role' and ('role of' some 'lung specimen'))) and ('has_specified_input' some ('lung specimen' and ('has role' some 'evaluant role')))) http://purl.obolibrary.org/obo/OBCS_0000262 screening sensitivity analysis 'screening sensitivity analysis' SubClassOf 'sensitivity analysis' http://purl.obolibrary.org/obo/OBI_0002388 diagnosis of HIV 'diagnosis of HIV' SubClassOf 'diagnosis of infectious disease' http://purl.obolibrary.org/obo/OBI_0003234 induced sputum assay 'induced sputum assay' EquivalentTo 'assay' and (('realizes' some ('evaluant role' and ('role of' some 'induced sputum specimen'))) and ('has_specified_input' some ('induced sputum specimen' and ('has role' some 'evaluant role')))) 'induced sputum assay' SubClassOf 'assay' http://purl.obolibrary.org/obo/OBI_0003237 feces assay 'feces assay' EquivalentTo 'assay' and (('realizes' some ('evaluant role' and ('role of' some 'feces specimen'))) and ('has_specified_input' some ('feces specimen' and ('has role' some 'evaluant role')))) 'feces assay' SubClassOf 'assay' http://purl.obolibrary.org/obo/OBCS_0000260 local sensitivity analysis 'local sensitivity analysis' SubClassOf 'sensitivity analysis' http://purl.obolibrary.org/obo/OBI_0003236 milk assay 'milk assay' SubClassOf 'assay' 'milk assay' EquivalentTo 'assay' and (('realizes' some ('evaluant role' and ('role of' some 'milk specimen'))) and ('has_specified_input' some ('milk specimen' and ('has role' some 'evaluant role')))) http://purl.obolibrary.org/obo/OBCS_0000265 expert elicitation 'expert elicitation' SubClassOf 'uncertainty analysis' http://purl.obolibrary.org/obo/OBCS_0000266 Numeral Unit Spread Assessment Pedigree 'Numeral Unit Spread Assessment Pedigree' SubClassOf 'uncertainty analysis' http://purl.obolibrary.org/obo/OBI_0003238 umbilical cord blood assay 'umbilical cord blood assay' SubClassOf 'assay' 'umbilical cord blood assay' EquivalentTo 'assay' and (('realizes' some ('evaluant role' and ('role of' some 'umbilical cord blood specimen'))) and ('has_specified_input' some ('umbilical cord blood specimen' and ('has role' some 'evaluant role')))) http://purl.obolibrary.org/obo/OBCS_0000263 error propagation equation 'error propagation equation' SubClassOf 'uncertainty analysis' http://purl.obolibrary.org/obo/OBCS_0000264 Monte Carlo analysis 'Monte Carlo analysis' SubClassOf 'uncertainty analysis' http://purl.obolibrary.org/obo/OBCS_0000269 Checklist for Model Quality Assistance 'Checklist for Model Quality Assistance' SubClassOf 'uncertainty analysis' http://purl.obolibrary.org/obo/OBCS_0000267 scenario analysis 'scenario analysis' SubClassOf 'uncertainty analysis' http://purl.obolibrary.org/obo/OBCS_0000268 Pluralistic fRamework of Integrated uncertainty Management and risk Analysis 'Pluralistic fRamework of Integrated uncertainty Management and risk Analysis' SubClassOf 'uncertainty analysis' http://purl.obolibrary.org/obo/OBI_0001051 DNA extract 'DNA extract' SubClassOf 'is_specified_output_of' some 'DNA extraction' 'DNA extract' SubClassOf 'has grain' some 'deoxyribonucleic acid' 'DNA extract' SubClassOf 'nucleic acid extract' http://purl.obolibrary.org/obo/OBI_0002385 diagnosis of infectious disease 'diagnosis of infectious disease' SubClassOf 'diagnosis' http://purl.obolibrary.org/obo/OBI_0003233 endotracheal aspirate assay 'endotracheal aspirate assay' SubClassOf 'assay' 'endotracheal aspirate assay' EquivalentTo 'assay' and (('realizes' some ('evaluant role' and ('role of' some 'endotracheal aspirate specimen'))) and ('has_specified_input' some ('endotracheal aspirate specimen' and ('has role' some 'evaluant role')))) http://purl.obolibrary.org/obo/OBI_0002386 diagnosis of hepatitis B 'diagnosis of hepatitis B' SubClassOf 'diagnosis of infectious disease' http://purl.obolibrary.org/obo/OBI_0003232 cerebrospinal fluid assay 'cerebrospinal fluid assay' SubClassOf 'assay' 'cerebrospinal fluid assay' EquivalentTo 'assay' and (('realizes' some ('evaluant role' and ('role of' some 'cerebrospinal fluid specimen'))) and ('has_specified_input' some ('cerebrospinal fluid specimen' and ('has role' some 'evaluant role')))) http://purl.obolibrary.org/obo/OBI_0000131 molecular feature identification objective 'molecular feature identification objective' SubClassOf 'biological feature identification objective' http://purl.obolibrary.org/obo/OBI_0001234 epigenetic modification identification objective 'epigenetic modification identification objective' SubClassOf 'molecular feature identification objective' http://purl.obolibrary.org/obo/OBI_0002565 adapter-sequence trimming 'adapter-sequence trimming' SubClassOf 'has_specified_input' some 'adapter sequence data' 'adapter-sequence trimming' SubClassOf 'has_specified_output' some 'adapter-trimmed sequence data' 'adapter-sequence trimming' SubClassOf 'sequence trimming' http://purl.obolibrary.org/obo/OBI_0002566 file merge 'file merge' SubClassOf 'data transformation' http://purl.obolibrary.org/obo/OBI_0002567 sequence alignment 'sequence alignment' SubClassOf 'sequence analysis data transformation' 'sequence alignment' SubClassOf 'has_specified_input' some 'sequence data' 'sequence alignment' SubClassOf 'has_specified_output' some 'aligned sequence data' http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism 'specimen from organism' SubClassOf 'specimen' 'specimen from organism' EquivalentTo ('has role' some 'specimen role') and ('derives from' some ('material anatomical entity' or 'anatomical cluster')) http://purl.obolibrary.org/obo/OBI_0002568 sequence data feature count tabulation 'sequence data feature count tabulation' SubClassOf 'has_specified_output' some 'sequence library feature count data' 'sequence data feature count tabulation' SubClassOf 'dataset creating' 'sequence data feature count tabulation' SubClassOf 'has_specified_input' some 'aligned sequence data' 'sequence data feature count tabulation' SubClassOf 'sequence analysis data transformation' http://purl.obolibrary.org/obo/OBI_0002569 trimmed sequence data 'trimmed sequence data' SubClassOf 'sequence data' 'trimmed sequence data' SubClassOf 'transformed data item' 'trimmed sequence data' EquivalentTo 'sequence data' and ('is_specified_output_of' some 'sequence trimming') http://purl.obolibrary.org/obo/OBI_0003417 antigen specific antibodies assay datum 'antigen specific antibodies assay datum' SubClassOf 'data item' 'antigen specific antibodies assay datum' EquivalentTo 'data item' and ('is_specified_output_of' some 'antigen specific antibodies assay') http://purl.obolibrary.org/obo/OBI_0003416 mid-upper arm circumference datum 'mid-upper arm circumference datum' SubClassOf 'length measurement datum' 'mid-upper arm circumference datum' SubClassOf 'is quality measurement of' some ('length' and ('quality of' some 'arm')) http://purl.obolibrary.org/obo/UBERON_0000344 mucosa 'mucosa' SubClassOf 'protein-containing material entity' 'mucosa' SubClassOf 'organ part' http://purl.obolibrary.org/obo/OBI_0003421 antigen specific antibodies in milk assay datum 'antigen specific antibodies in milk assay datum' SubClassOf 'milk assay datum' 'antigen specific antibodies in milk assay datum' EquivalentTo 'antigen specific antibodies assay datum' and ('is_specified_output_of' some 'milk assay') 'antigen specific antibodies in milk assay datum' SubClassOf 'antigen specific antibodies assay datum' http://purl.obolibrary.org/obo/OBI_0002578 adapter sequence data 'adapter sequence data' SubClassOf 'sequence data' http://purl.obolibrary.org/obo/OBI_0002579 adapter-trimmed sequence data 'adapter-trimmed sequence data' SubClassOf 'sequence data' http://purl.obolibrary.org/obo/OBI_0003420 antigen specific antibodies in blood assay datum 'antigen specific antibodies in blood assay datum' SubClassOf 'antigen specific antibodies assay datum' 'antigen specific antibodies in blood assay datum' EquivalentTo 'antigen specific antibodies assay datum' and ('is_specified_output_of' some 'blood assay') 'antigen specific antibodies in blood assay datum' SubClassOf 'blood assay datum' http://purl.obolibrary.org/obo/OBI_2000013 arterial blood specimen 'arterial blood specimen' SubClassOf 'bodily fluid specimen' 'arterial blood specimen' EquivalentTo ('specimen' and ('is_specified_output_of' some 'specimen collection process') and ('derives from' some 'arterial blood')) and ('specimen' and ('is_specified_output_of' some 'collecting specimen from organism')) http://purl.obolibrary.org/obo/OBI_2000012 umbilical cord blood specimen 'umbilical cord blood specimen' EquivalentTo ('specimen' and ('is_specified_output_of' some 'specimen collection process') and ('derives from' some 'umbilical cord blood')) and ('specimen' and ('is_specified_output_of' some 'collecting specimen from organism')) 'umbilical cord blood specimen' SubClassOf 'arterial blood specimen' http://purl.obolibrary.org/obo/OBI_0002585 sequence trimming 'sequence trimming' SubClassOf 'data transformation' http://purl.obolibrary.org/obo/OBI_0002580 aligned sequence data 'aligned sequence data' SubClassOf 'sequence data' http://purl.obolibrary.org/obo/OBI_0002581 merged aligned sequence data 'merged aligned sequence data' SubClassOf 'transformed data item' 'merged aligned sequence data' SubClassOf 'is_specified_output_of' some 'file merge' 'merged aligned sequence data' SubClassOf 'sequence data' http://purl.obolibrary.org/obo/OBI_0002582 sequence library feature count data 'sequence library feature count data' SubClassOf 'data set' http://purl.obolibrary.org/obo/OBI_0001010 nucleic acid extract 'nucleic acid extract' SubClassOf 'has grain' some 'nucleic acid' 'nucleic acid extract' SubClassOf 'extract' 'nucleic acid extract' SubClassOf 'processed specimen' 'nucleic acid extract' SubClassOf ('is_specified_output_of' some 'nucleic acid extraction') and ('has role' some 'specimen role') http://purl.obolibrary.org/obo/OBI_0002583 DNA methylation profiling data 'DNA methylation profiling data' SubClassOf 'sequence data' 'DNA methylation profiling data' SubClassOf 'is_specified_output_of' some 'DNA methylation profiling assay' http://purl.obolibrary.org/obo/OBI_0002584 differential expression analysis data 'differential expression analysis data' SubClassOf 'data set' http://purl.obolibrary.org/obo/BFO_0000182 history 'history' SubClassOf 'process' 'process profile' DisjointWith 'history' http://purl.obolibrary.org/obo/OBI_0002992 prevalence of pathogen in specimens 'prevalence of pathogen in specimens' SubClassOf 'data item' http://purl.obolibrary.org/obo/OBI_0002993 prevalence of blood meal specimens from a host organism 'prevalence of blood meal specimens from a host organism' SubClassOf 'data item' http://purl.obolibrary.org/obo/OBI_0002994 presence of blood from host organism in blood meal specimen 'presence of blood from host organism in blood meal specimen' SubClassOf 'data item' http://purl.obolibrary.org/obo/OBI_0002512 bone marrow specimen 'bone marrow specimen' EquivalentTo ('specimen' and ('is_specified_output_of' some 'specimen collection process') and ('derives from' some 'bone marrow')) and ('specimen' and ('is_specified_output_of' some 'bone marrow biopsy')) 'bone marrow specimen' SubClassOf 'specimen from organism' http://purl.obolibrary.org/obo/OBI_0002515 pleural fluid specimen 'pleural fluid specimen' SubClassOf 'bodily fluid specimen' 'pleural fluid specimen' EquivalentTo ('specimen' and ('is_specified_output_of' some 'specimen collection process') and ('derives from' some 'pleural fluid')) and ('specimen' and ('is_specified_output_of' some 'collecting specimen from organism')) http://purl.obolibrary.org/obo/OBI_0002526 skin of body specimen 'skin of body specimen' EquivalentTo ('specimen' and ('is_specified_output_of' some 'specimen collection process') and ('derives from' some ('tissue' and ('part of' some 'skin of body')))) and ('specimen' and ('is_specified_output_of' some 'collecting specimen from organism')) 'skin of body specimen' SubClassOf 'specimen from organism' http://purl.obolibrary.org/obo/OBI_0002769 karyotype information 'karyotype information' SubClassOf 'genetic characteristics information' http://purl.obolibrary.org/obo/OBI_0002534 lung specimen 'lung specimen' EquivalentTo ('specimen' and ('is_specified_output_of' some 'specimen collection process') and ('derives from' some ('tissue' and ('part of' some 'lung')))) and ('specimen' and ('is_specified_output_of' some 'collecting specimen from organism')) 'lung specimen' SubClassOf 'specimen from organism' http://purl.obolibrary.org/obo/OBI_0002776 cytometry analysis by automated gating 'cytometry analysis by automated gating' SubClassOf 'gating' http://purl.obolibrary.org/obo/OBI_0002777 cytometry analysis by manual gating 'cytometry analysis by manual gating' SubClassOf 'gating' http://purl.obolibrary.org/obo/UBERON_0004119 endoderm-derived structure 'endoderm-derived structure' SubClassOf 'anatomical structure' http://purl.obolibrary.org/obo/OBI_0002770 partial karyotype information 'partial karyotype information' SubClassOf 'karyotype information' 'partial karyotype information' SubClassOf 'part of' some 'full karyotype information' http://purl.obolibrary.org/obo/OBI_0002771 full karyotype information 'full karyotype information' SubClassOf 'karyotype information' http://purl.obolibrary.org/obo/UBERON_0006538 respiratory system fluid/secretion 'respiratory system fluid/secretion' SubClassOf 'organism substance' http://purl.obolibrary.org/obo/UBERON_0001087 pleural fluid 'pleural fluid' SubClassOf 'transudate' http://purl.obolibrary.org/obo/UBERON_0001088 urine 'urine' SubClassOf 'excreta' http://purl.obolibrary.org/obo/OBI_0002785 aspiration specimen collection 'aspiration specimen collection' SubClassOf 'specimen collection process' http://purl.obolibrary.org/obo/OBI_0002780 nasal aspirate specimen 'nasal aspirate specimen' EquivalentTo ('specimen' and ('is_specified_output_of' some 'aspiration specimen collection')) and ('specimen' and ('is_specified_output_of' some ('specimen collection process' and ('has_specified_input' some 'nasal cavity mucosa')))) 'nasal aspirate specimen' SubClassOf 'specimen' http://purl.obolibrary.org/obo/PATO_0000001 quality 'quality' SubClassOf 'specifically dependent continuant' http://purl.obolibrary.org/obo/UBERON_0004121 ectoderm-derived structure 'ectoderm-derived structure' SubClassOf 'anatomical structure' http://purl.obolibrary.org/obo/OBCS_0000294 reacting subject 'reacting subject' SubClassOf 'uncertainty arise condition' http://purl.obolibrary.org/obo/OBCS_0000295 operative complication (experimental) 'operative complication (experimental)' SubClassOf 'uncertainty arise condition' http://purl.obolibrary.org/obo/OBCS_0000292 lack of institutional security 'lack of institutional security' SubClassOf 'uncertainty arise condition' http://purl.obolibrary.org/obo/OBCS_0000293 delay and lack of communication between investigators 'delay and lack of communication between investigators' SubClassOf 'uncertainty arise condition' http://purl.obolibrary.org/obo/OBCS_0000298 order data sequentially or by spatial location 'order data sequentially or by spatial location' SubClassOf 'uncertainty response activity' http://purl.obolibrary.org/obo/OBCS_0000299 standardize 'standardize' SubClassOf 'uncertainty response activity' http://purl.obolibrary.org/obo/OBCS_0000296 uncontrollable procedure 'uncontrollable procedure' SubClassOf 'uncertainty arise condition' http://purl.obolibrary.org/obo/OBCS_0000297 observational difficulty 'observational difficulty' SubClassOf 'uncertainty arise condition' http://purl.obolibrary.org/obo/UBERON_0012168 umbilical cord blood 'umbilical cord blood' SubClassOf 'arterial blood' http://purl.obolibrary.org/obo/CL_0000010 cultured cell 'cultured cell' SubClassOf 'experimentally modified cell in vitro' http://purl.obolibrary.org/obo/OGMS_0000123 clinical data item 'clinical data item' SubClassOf 'data item' http://purl.obolibrary.org/obo/UBERON_0000174 excreta 'excreta' SubClassOf 'organism substance' http://purl.obolibrary.org/obo/OBCS_0000290 lack of funding 'lack of funding' SubClassOf 'uncertainty arise condition' http://purl.obolibrary.org/obo/OBCS_0000291 sporadic funding 'sporadic funding' SubClassOf 'uncertainty arise condition' http://purl.obolibrary.org/obo/UBERON_0000178 blood 'blood' SubClassOf 'protein-containing material entity' 'blood' SubClassOf 'bodily fluid' http://purl.obolibrary.org/obo/OBCS_0000283 uncontrollable experimental condition 'uncontrollable experimental condition' SubClassOf 'uncertainty arise condition' http://purl.obolibrary.org/obo/OBCS_0000284 lack of information for comparison 'lack of information for comparison' SubClassOf 'uncertainty arise condition' http://purl.obolibrary.org/obo/OBCS_0000281 unclear boundaries of causal phenomena 'unclear boundaries of causal phenomena' SubClassOf 'uncertainty arise condition' http://purl.obolibrary.org/obo/OBCS_0000282 lack of causal model 'lack of causal model' SubClassOf 'uncertainty arise condition' http://purl.obolibrary.org/obo/OBCS_0000287 specialist/nonspecialist handling of the same case 'specialist/nonspecialist handling of the same case' SubClassOf 'uncertainty arise condition' http://purl.obolibrary.org/obo/OBCS_0000288 unequal status between investigators 'unequal status between investigators' SubClassOf 'uncertainty arise condition' http://purl.obolibrary.org/obo/OBCS_0000285 labile and spreading symptom and side effect 'labile and spreading symptom and side effect' SubClassOf 'uncertainty arise condition' http://purl.obolibrary.org/obo/OBCS_0000286 delayed information 'delayed information' SubClassOf 'uncertainty arise condition' http://purl.obolibrary.org/obo/OBCS_0000289 poor management-staff relation 'poor management-staff relation' SubClassOf 'uncertainty arise condition' http://purl.obolibrary.org/obo/OBCS_0000280 diverse populations for study 'diverse populations for study' SubClassOf 'uncertainty arise condition' http://purl.obolibrary.org/obo/OBI_0002972 endotracheal aspirate specimen 'endotracheal aspirate specimen' SubClassOf 'specimen' and ('is_specified_output_of' some 'collecting specimen from organism') 'endotracheal aspirate specimen' SubClassOf 'specimen' and ('is_specified_output_of' some 'specimen collection process') and ('derives from' some 'respiratory system fluid/secretion') 'endotracheal aspirate specimen' SubClassOf 'specimen from organism' http://purl.obolibrary.org/obo/OBI_0002975 input protein sequence start site 'input protein sequence start site' SubClassOf 'sequence data' http://purl.obolibrary.org/obo/OBI_0002976 input protein sequence stop site 'input protein sequence stop site' SubClassOf 'sequence data' http://purl.obolibrary.org/obo/OBI_0002977 input gene sequence start site 'input gene sequence start site' SubClassOf 'sequence data' http://purl.obolibrary.org/obo/UBERON_0002371 bone marrow 'bone marrow' SubClassOf 'tissue' http://purl.obolibrary.org/obo/OBI_0002978 input gene sequence stop site 'input gene sequence stop site' SubClassOf 'sequence data' http://purl.obolibrary.org/obo/OBI_0002979 reference protein sequence start site 'reference protein sequence start site' SubClassOf 'sequence data' http://purl.obolibrary.org/obo/OBI_0002981 reference gene sequence start site 'reference gene sequence start site' SubClassOf 'sequence data' http://purl.obolibrary.org/obo/OBI_0002982 reference gene sequence stop site 'reference gene sequence stop site' SubClassOf 'sequence data' http://purl.obolibrary.org/obo/OBI_0002983 altitude measurement datum 'altitude measurement datum' SubClassOf 'length measurement datum' http://purl.obolibrary.org/obo/OBI_0002985 magnetic resonance imaging assay 'magnetic resonance imaging assay' SubClassOf 'has_specified_input' some ('has role' some 'magnetic resonance imaging evaluant role') 'magnetic resonance imaging assay' SubClassOf 'realizes' some ('concretizes' some 'magnetic resonance pulse sequence protocol') 'magnetic resonance imaging assay' SubClassOf 'imaging assay' 'magnetic resonance imaging assay' SubClassOf ('realizes' some ('function' and ('characteristic of' some 'NMR instrument'))) and ('has_specified_input' some 'NMR instrument') http://purl.obolibrary.org/obo/OBI_0002502 cerebrospinal fluid specimen 'cerebrospinal fluid specimen' EquivalentTo ('specimen' and ('is_specified_output_of' some 'specimen collection process') and ('derives from' some 'cerebrospinal fluid')) and ('specimen' and ('is_specified_output_of' some 'collecting specimen from organism')) 'cerebrospinal fluid specimen' SubClassOf 'bodily fluid specimen' http://purl.obolibrary.org/obo/OBI_0002503 feces specimen 'feces specimen' EquivalentTo ('specimen' and ('is_specified_output_of' some 'specimen collection process') and ('derives from' some 'feces')) and ('specimen' and ('is_specified_output_of' some 'collecting specimen from organism')) 'feces specimen' SubClassOf 'specimen from organism' http://purl.obolibrary.org/obo/OBI_0002746 induced sputum specimen 'induced sputum specimen' SubClassOf 'specimen' and ('is_specified_output_of' some 'specimen collection process') and ('derives from' some 'sputum') 'induced sputum specimen' SubClassOf 'sputum specimen' 'induced sputum specimen' SubClassOf 'specimen' and ('is_specified_output_of' some 'collecting specimen from organism') http://purl.obolibrary.org/obo/OBI_0002988 specimen collection duration 'specimen collection duration' SubClassOf 'time measurement datum' http://purl.obolibrary.org/obo/OBI_0000566 NMR instrument 'NMR instrument' SubClassOf 'measurement device' 'NMR instrument' SubClassOf 'has function' some 'measure function' http://purl.obolibrary.org/obo/OBI_0002980 reference protein sequence stop site 'reference protein sequence stop site' SubClassOf 'sequence data' http://purl.obolibrary.org/obo/OBI_0002505 milk specimen 'milk specimen' SubClassOf 'bodily fluid specimen' 'milk specimen' EquivalentTo ('specimen' and ('is_specified_output_of' some 'specimen collection process') and ('derives from' some 'milk')) and ('specimen' and ('is_specified_output_of' some 'collecting specimen from organism')) http://purl.obolibrary.org/obo/OBI_0002747 passage process 'passage process' SubClassOf 'material processing' http://purl.obolibrary.org/obo/OBI_0002748 passage history record 'passage history record' SubClassOf 'is about' some 'passage process' 'passage history record' SubClassOf 'data item' http://purl.obolibrary.org/obo/OBI_0002508 sputum specimen 'sputum specimen' SubClassOf 'specimen from organism' 'sputum specimen' EquivalentTo ('specimen' and ('is_specified_output_of' some 'specimen collection process') and ('derives from' some 'sputum')) and ('specimen' and ('is_specified_output_of' some 'collecting specimen from organism')) http://purl.obolibrary.org/obo/UBERON_0001913 milk 'milk' SubClassOf 'bodily fluid' 'milk' SubClassOf 'protein-containing material entity' http://purl.obolibrary.org/obo/OBI_0000634 DNA methylation profiling assay 'DNA methylation profiling assay' SubClassOf 'has_specified_input' some ('specimen' and ('has part' some 'deoxyribonucleic acid')) 'DNA methylation profiling assay' SubClassOf ('realizes' some ('evaluant role' and ('role of' some 'DNA extract'))) and ('has_specified_input' some ('DNA extract' and ('has role' some 'evaluant role'))) 'DNA methylation profiling assay' SubClassOf 'epigenetic modification assay' 'DNA methylation profiling assay' SubClassOf 'has_specified_output' some 'data item' 'DNA methylation profiling assay' SubClassOf 'has_specified_output' some ('is about' some 'DNA methylation') 'DNA methylation profiling assay' SubClassOf 'achieves_planned_objective' some 'epigenetic modification identification objective' http://purl.obolibrary.org/obo/OBI_0000873 pre-mortem specimen 'pre-mortem specimen' EquivalentTo 'is_specified_output_of' some ('specimen collection process' and ('has_specified_input' some ('organism' and ('has quality' some 'alive')))) 'pre-mortem specimen' SubClassOf 'specimen with pre- or post-mortem status' http://purl.obolibrary.org/obo/OBI_0000639 material separation objective 'material separation objective' SubClassOf 'material transformation objective' 'material separation objective' EquivalentTo 'portioning objective' or 'separation into different composition objective' http://purl.obolibrary.org/obo/SO_0001410 experimental_feature 'experimental_feature' SubClassOf 'region' http://purl.obolibrary.org/obo/OBI_0003083 specimen collection time post disease onset 'specimen collection time post disease onset' SubClassOf 'specimen collection time measurement datum' http://purl.obolibrary.org/obo/OBI_0003084 specimen collection time post infection 'specimen collection time post infection' SubClassOf 'specimen collection time measurement datum' http://purl.obolibrary.org/obo/UBERON_0006314 bodily fluid 'bodily fluid' SubClassOf 'organism substance' http://purl.obolibrary.org/obo/OBI_0001912 cell freezing medium 'cell freezing medium' SubClassOf 'processed material' http://purl.obolibrary.org/obo/OBI_0600036 establishing cell culture 'establishing cell culture' SubClassOf 'material processing' 'establishing cell culture' SubClassOf 'achieves_planned_objective' some 'material transformation objective' 'establishing cell culture' SubClassOf 'has_specified_input' some 'cell' 'establishing cell culture' SubClassOf 'has_specified_input' some 'culture medium' 'establishing cell culture' SubClassOf 'has_specified_output' some 'cultured cell population' http://purl.obolibrary.org/obo/PATO_0001995 organismal quality 'organismal quality' SubClassOf 'physical object quality' http://purl.obolibrary.org/obo/OBI_0000838 material maintenance 'material maintenance' EquivalentTo 'achieves_planned_objective' some 'material maintenance objective' 'material maintenance' SubClassOf 'planned process' http://purl.obolibrary.org/obo/OBI_0200001 geometric mean calculation 'geometric mean calculation' SubClassOf 'center calculation data transformation' 'geometric mean calculation' SubClassOf ('has_specified_output' some 'center value') and ('achieves_planned_objective' some 'center calculation objective') 'geometric mean calculation' SubClassOf 'dataset creating' 'geometric mean calculation' SubClassOf 'achieves_planned_objective' some 'descriptive statistical calculation objective' http://purl.obolibrary.org/obo/OBI_0600014 material component separation 'material component separation' SubClassOf 'has_specified_input' some 'material entity' 'material component separation' SubClassOf 'material processing' 'material component separation' EquivalentTo 'achieves_planned_objective' some 'material separation objective' 'material component separation' SubClassOf 'has_specified_output' some 'material entity' http://purl.obolibrary.org/obo/UBERON_0001988 feces 'feces' SubClassOf 'excreta' http://purl.obolibrary.org/obo/OBI_0003282 lung microbiology assay 'lung microbiology assay' SubClassOf 'organism detection assay' 'lung microbiology assay' SubClassOf 'lung assay' 'lung microbiology assay' SubClassOf ('realizes' some ('evaluant role' and ('role of' some 'lung specimen'))) and ('has_specified_input' some ('lung specimen' and ('has role' some 'evaluant role'))) http://purl.obolibrary.org/obo/OBI_0003040 blood assay 'blood assay' EquivalentTo 'assay' and (('realizes' some ('evaluant role' and ('role of' some 'blood specimen'))) and ('has_specified_input' some ('blood specimen' and ('has role' some 'evaluant role')))) 'blood assay' SubClassOf 'assay' http://purl.obolibrary.org/obo/OBI_0003281 eukaryota in umbilical cord blood datum 'eukaryota in umbilical cord blood datum' SubClassOf 'eukaryota in blood datum' 'eukaryota in umbilical cord blood datum' SubClassOf 'umbilical cord blood microbiology datum' 'eukaryota in umbilical cord blood datum' EquivalentTo 'umbilical cord blood microbiology datum' and ('is about' some 'Eukaryota') http://purl.obolibrary.org/obo/OBI_0003284 umbilical cord blood microbiology assay 'umbilical cord blood microbiology assay' SubClassOf 'blood microbiology assay' 'umbilical cord blood microbiology assay' SubClassOf 'umbilical cord blood assay' 'umbilical cord blood microbiology assay' SubClassOf ('realizes' some ('evaluant role' and ('role of' some 'umbilical cord blood specimen'))) and ('has_specified_input' some ('umbilical cord blood specimen' and ('has role' some 'evaluant role'))) http://purl.obolibrary.org/obo/OBI_0003283 pleural fluid microbiology assay 'pleural fluid microbiology assay' SubClassOf ('realizes' some ('evaluant role' and ('role of' some 'pleural fluid specimen'))) and ('has_specified_input' some ('pleural fluid specimen' and ('has role' some 'evaluant role'))) 'pleural fluid microbiology assay' SubClassOf 'organism detection assay' http://purl.obolibrary.org/obo/OBI_0003043 urine assay 'urine assay' SubClassOf 'assay' 'urine assay' EquivalentTo 'assay' and (('realizes' some ('evaluant role' and ('role of' some 'urine specimen'))) and ('has_specified_input' some ('urine specimen' and ('has role' some 'evaluant role')))) http://purl.obolibrary.org/obo/OBI_0003286 urine microbiology assay 'urine microbiology assay' SubClassOf 'urine assay' 'urine microbiology assay' SubClassOf 'organism detection assay' 'urine microbiology assay' SubClassOf ('realizes' some ('evaluant role' and ('role of' some 'urine specimen'))) and ('has_specified_input' some ('urine specimen' and ('has role' some 'evaluant role'))) http://purl.obolibrary.org/obo/OBI_0002197 tissue section thickness 'tissue section thickness' SubClassOf 'length measurement datum' http://purl.obolibrary.org/obo/OBI_0003285 nasopharyngeal or oropharyngeal swab microbiology assay 'nasopharyngeal or oropharyngeal swab microbiology assay' SubClassOf 'organism detection assay' 'nasopharyngeal or oropharyngeal swab microbiology assay' SubClassOf ('realizes' some ('evaluant role' and ('role of' some ('nasopharyngeal swab specimen' or 'oropharyngeal swab specimen')))) and ('has_specified_input' some (('nasopharyngeal swab specimen' or 'oropharyngeal swab specimen') and ('has role' some 'evaluant role'))) http://purl.obolibrary.org/obo/BFO_0000008 temporal region 'temporal region' DisjointWith 'spatiotemporal region' 'temporal region' DisjointWith 'process boundary' 'temporal region' DisjointWith 'process' 'temporal region' SubClassOf 'occurrent' http://purl.obolibrary.org/obo/BFO_0000011 spatiotemporal region 'temporal region' DisjointWith 'spatiotemporal region' 'spatiotemporal region' SubClassOf 'occurrent' http://purl.obolibrary.org/obo/OBI_0600024 maintaining cell culture 'maintaining cell culture' SubClassOf 'has_specified_input' some ('culture medium' or 'cell freezing medium') 'maintaining cell culture' SubClassOf 'has_specified_output' some 'cultured cell population' 'maintaining cell culture' SubClassOf 'has_specified_input' some 'cultured cell population' 'maintaining cell culture' SubClassOf 'achieves_planned_objective' some 'material maintenance objective' 'maintaining cell culture' SubClassOf 'material maintenance' http://purl.obolibrary.org/obo/OBI_0003295 positive binding datum 'positive binding datum' SubClassOf 'categorical binding datum' http://purl.obolibrary.org/obo/OBI_0003056 proportion mapped reads 'proportion mapped reads' SubClassOf 'sequence data' http://purl.obolibrary.org/obo/OBI_0666667 nucleic acid extraction 'nucleic acid extraction' SubClassOf 'has_specified_output' some 'nucleic acid extract' 'nucleic acid extraction' SubClassOf 'has_specified_input' some ('sample from organism' or 'organism' or 'cultured cell population') 'nucleic acid extraction' SubClassOf 'extraction' http://purl.obolibrary.org/obo/OBCS_0000310 standardization of techniques and material 'standardization of techniques and material' SubClassOf 'standardize' http://purl.obolibrary.org/obo/BFO_0000027 object aggregate 'object aggregate' SubClassOf 'material entity' http://purl.obolibrary.org/obo/OBCS_0000313 substitution of theoretical validity for technical consistency 'substitution of theoretical validity for technical consistency' SubClassOf 'uncertainty response activity' http://purl.obolibrary.org/obo/OBCS_0000314 measurement error 'measurement error' SubClassOf 'uncertainty arise condition' http://purl.obolibrary.org/obo/OBCS_0000311 standardization of observational technique (form) and protocol 'standardization of observational technique (form) and protocol' SubClassOf 'standardize' http://purl.obolibrary.org/obo/OBI_0003063 insecticide resistance datum 'insecticide resistance datum' SubClassOf 'data item' http://purl.obolibrary.org/obo/OBCS_0000312 observations down-focused to smaller area 'observations down-focused to smaller area' SubClassOf 'uncertainty response activity' http://purl.obolibrary.org/obo/OBI_0003064 organism detection datum 'organism detection datum' EquivalentTo 'data item' and ('is_specified_output_of' some 'organism detection assay') 'organism detection datum' SubClassOf 'data item' http://purl.obolibrary.org/obo/OBCS_0000317 imperfect model 'imperfect model' SubClassOf 'uncertainty arise condition' http://purl.obolibrary.org/obo/OBCS_0000318 subjective judgement 'subjective judgement' SubClassOf 'uncertainty arise condition' http://purl.obolibrary.org/obo/OBI_0003066 easting coordinate measurement datum 'easting coordinate measurement datum' SubClassOf 'one dimensional cartesian spatial coordinate datum' http://purl.obolibrary.org/obo/UBERON_0010000 multicellular anatomical structure 'multicellular anatomical structure' SubClassOf 'anatomical structure' http://purl.obolibrary.org/obo/BFO_0000029 site 'site' SubClassOf 'immaterial entity' 'spatial region' DisjointWith 'site' http://purl.obolibrary.org/obo/OBCS_0000315 incomplete knowledge 'incomplete knowledge' SubClassOf 'uncertainty arise condition' http://purl.obolibrary.org/obo/OBI_0003067 northing coordinate measurement datum 'northing coordinate measurement datum' SubClassOf 'one dimensional cartesian spatial coordinate datum' http://purl.obolibrary.org/obo/OBCS_0000316 limited understanding 'limited understanding' SubClassOf 'uncertainty arise condition' http://purl.obolibrary.org/obo/BFO_0000030 object 'object' SubClassOf 'material entity' http://purl.obolibrary.org/obo/OBCS_0000308 observations limited to available material 'observations limited to available material' SubClassOf 'uncertainty response activity' http://purl.obolibrary.org/obo/OBCS_0000309 utilitarian emphasis on practical result 'utilitarian emphasis on practical result' SubClassOf 'uncertainty response activity' http://purl.obolibrary.org/obo/UBERON_0013755 arterial blood 'arterial blood' SubClassOf 'blood' http://purl.obolibrary.org/obo/OBI_0600005 collecting specimen from organism 'collecting specimen from organism' SubClassOf 'has_specified_output' some 'specimen' 'collecting specimen from organism' SubClassOf 'has_specified_input' some 'organism' 'collecting specimen from organism' SubClassOf 'specimen collection process' 'collecting specimen from organism' SubClassOf 'achieves_planned_objective' some 'specimen collection objective' http://purl.obolibrary.org/obo/OBCS_0000302 substitution of taxonomy for diagnosis 'substitution of taxonomy for diagnosis' SubClassOf 'uncertainty response activity' http://purl.obolibrary.org/obo/OBI_0003072 axillary temperature measurement datum 'axillary temperature measurement datum' SubClassOf 'temperature measurement datum' http://purl.obolibrary.org/obo/OBCS_0000303 division of labor 'division of labor' SubClassOf 'uncertainty response activity' http://purl.obolibrary.org/obo/OBI_0003073 organismal body temperature measurement datum 'organismal body temperature measurement datum' SubClassOf 'temperature measurement datum' http://purl.obolibrary.org/obo/OBCS_0000300 find exemplars-filter for clear-cut case 'find exemplars-filter for clear-cut case' SubClassOf 'uncertainty response activity' http://purl.obolibrary.org/obo/OBCS_0000301 segmentation of uncertainty 'segmentation of uncertainty' SubClassOf 'uncertainty response activity' http://purl.obolibrary.org/obo/OBI_0003075 age since birth at time of enrollment 'age since birth at time of enrollment' SubClassOf 'age since birth measurement datum' http://purl.obolibrary.org/obo/OBCS_0000306 division of data along political line for clarity 'division of data along political line for clarity' SubClassOf 'uncertainty response activity' http://purl.obolibrary.org/obo/OBI_0003076 age since birth at time of visit 'age since birth at time of visit' SubClassOf 'age since birth measurement datum' http://purl.obolibrary.org/obo/OBCS_0000307 division of labor along technical/substantive line 'division of labor along technical/substantive line' SubClassOf 'uncertainty response activity' http://purl.obolibrary.org/obo/OBI_0003077 entomological data item 'entomological data item' SubClassOf 'data item' http://purl.obolibrary.org/obo/OBCS_0000304 search for pathognomonic sign 'search for pathognomonic sign' SubClassOf 'uncertainty response activity' http://purl.obolibrary.org/obo/OBCS_0000305 shotgun treatment 'shotgun treatment' SubClassOf 'uncertainty response activity' http://purl.obolibrary.org/obo/OBI_0003079 temperature measurement datum 'temperature measurement datum' SubClassOf 'scalar measurement datum' http://purl.obolibrary.org/obo/OBI_0000806 material maintenance objective 'material maintenance objective' SubClassOf 'objective specification' http://purl.obolibrary.org/obo/BFO_0000024 fiat object part 'fiat object part' SubClassOf 'material entity' http://purl.obolibrary.org/obo/OBI_0003081 extraction date 'extraction date' SubClassOf 'time measurement datum' http://purl.obolibrary.org/obo/OBI_0003082 extraction duration time 'extraction duration time' SubClassOf 'time measurement datum' http://purl.obolibrary.org/obo/IAO_0000185 photograph 'photograph' SubClassOf 'image' http://purl.obolibrary.org/obo/IAO_0000181 Venn diagram 'Venn diagram' SubClassOf 'graph' http://purl.obolibrary.org/obo/OBI_0003246 feces microbiology datum 'feces microbiology datum' SubClassOf 'organism detection datum' 'feces microbiology datum' SubClassOf 'feces assay datum' 'feces microbiology datum' EquivalentTo 'organism detection datum' and ('is_specified_output_of' some 'feces microbiology assay') http://purl.obolibrary.org/obo/OBI_0003245 feces assay datum 'feces assay datum' SubClassOf 'data item' 'feces assay datum' EquivalentTo 'data item' and ('is_specified_output_of' some 'feces assay') http://purl.obolibrary.org/obo/OBI_0003248 urine microbiology datum 'urine microbiology datum' SubClassOf 'urine assay datum' 'urine microbiology datum' SubClassOf 'organism detection datum' 'urine microbiology datum' EquivalentTo 'organism detection datum' and ('is_specified_output_of' some 'urine microbiology assay') http://purl.obolibrary.org/obo/OBI_0003247 urine assay datum 'urine assay datum' EquivalentTo 'data item' and ('is_specified_output_of' some 'urine assay') 'urine assay datum' SubClassOf 'data item' http://purl.obolibrary.org/obo/OBI_0003249 induced sputum assay datum 'induced sputum assay datum' SubClassOf 'data item' 'induced sputum assay datum' EquivalentTo 'data item' and ('is_specified_output_of' some 'induced sputum assay') http://purl.obolibrary.org/obo/OBI_0003240 cerebrospinal fluid microbiology assay 'cerebrospinal fluid microbiology assay' SubClassOf 'organism detection assay' 'cerebrospinal fluid microbiology assay' SubClassOf 'cerebrospinal fluid assay' 'cerebrospinal fluid microbiology assay' SubClassOf ('realizes' some ('evaluant role' and ('role of' some 'cerebrospinal fluid specimen'))) and ('has_specified_input' some ('cerebrospinal fluid specimen' and ('has role' some 'evaluant role'))) http://purl.obolibrary.org/obo/OBI_0002394 number of pregnancies 'number of pregnancies' SubClassOf 'measurement datum' http://purl.obolibrary.org/obo/OBI_0003242 induced sputum microbiology assay 'induced sputum microbiology assay' SubClassOf 'induced sputum assay' 'induced sputum microbiology assay' SubClassOf 'organism detection assay' 'induced sputum microbiology assay' SubClassOf ('realizes' some ('evaluant role' and ('role of' some 'induced sputum specimen'))) and ('has_specified_input' some ('induced sputum specimen' and ('has role' some 'evaluant role'))) http://purl.obolibrary.org/obo/OBI_0002395 number of live births 'number of live births' SubClassOf 'measurement datum' http://purl.obolibrary.org/obo/OBI_0003241 endotracheal tube aspirate microbiology assay 'endotracheal tube aspirate microbiology assay' SubClassOf 'endotracheal aspirate assay' 'endotracheal tube aspirate microbiology assay' SubClassOf ('realizes' some ('evaluant role' and ('role of' some 'endotracheal aspirate specimen'))) and ('has_specified_input' some ('endotracheal aspirate specimen' and ('has role' some 'evaluant role'))) 'endotracheal tube aspirate microbiology assay' SubClassOf 'organism detection assay' http://purl.obolibrary.org/obo/UBERON_8470000 placental blood 'placental blood' SubClassOf 'blood' http://purl.obolibrary.org/obo/OBI_0002396 age when gave birth to first child 'age when gave birth to first child' SubClassOf 'age measurement datum' http://purl.obolibrary.org/obo/OBI_0003244 blood microbiology datum 'blood microbiology datum' EquivalentTo 'organism detection datum' and ('is_specified_output_of' some 'blood microbiology assay') 'blood microbiology datum' SubClassOf 'organism detection datum' 'blood microbiology datum' SubClassOf 'blood assay datum' http://purl.obolibrary.org/obo/OBI_0003243 blood assay datum 'blood assay datum' SubClassOf 'data item' 'blood assay datum' EquivalentTo 'data item' and ('is_specified_output_of' some 'blood assay') http://purl.obolibrary.org/obo/OBI_0003257 nasopharyngeal or oropharyngeal swab microbiology datum 'nasopharyngeal or oropharyngeal swab microbiology datum' EquivalentTo 'organism detection datum' and ('is_specified_output_of' some 'nasopharyngeal or oropharyngeal swab microbiology assay') 'nasopharyngeal or oropharyngeal swab microbiology datum' SubClassOf 'organism detection datum' http://purl.obolibrary.org/obo/OBI_0003498 organism detection assay 'organism detection assay' SubClassOf 'has_specified_input' some 'specimen' 'organism detection assay' SubClassOf 'has_specified_output' some ('is about' some 'organism') 'organism detection assay' SubClassOf 'assay' http://purl.obolibrary.org/obo/OBI_0003256 lung microbiology datum 'lung microbiology datum' SubClassOf 'organism detection datum' 'lung microbiology datum' EquivalentTo 'organism detection datum' and ('is_specified_output_of' some 'lung microbiology assay') http://purl.obolibrary.org/obo/OBI_0003259 umbilical cord blood assay datum 'umbilical cord blood assay datum' EquivalentTo 'data item' and ('is_specified_output_of' some 'umbilical cord blood assay') 'umbilical cord blood assay datum' SubClassOf 'data item' http://purl.obolibrary.org/obo/OBI_0003258 pleural fluid microbiology datum 'pleural fluid microbiology datum' SubClassOf 'organism detection datum' 'pleural fluid microbiology datum' EquivalentTo 'organism detection datum' and ('is_specified_output_of' some 'pleural fluid microbiology assay') http://purl.obolibrary.org/obo/OBI_0003251 induced sputum microbiology datum 'induced sputum microbiology datum' SubClassOf 'organism detection datum' 'induced sputum microbiology datum' SubClassOf 'induced sputum assay datum' 'induced sputum microbiology datum' EquivalentTo 'organism detection datum' and ('is_specified_output_of' some 'induced sputum microbiology assay') http://purl.obolibrary.org/obo/OBI_0003253 cerebrospinal fluid microbiology datum 'cerebrospinal fluid microbiology datum' SubClassOf 'organism detection datum' 'cerebrospinal fluid microbiology datum' SubClassOf 'cerebrospinal fluid assay datum' 'cerebrospinal fluid microbiology datum' EquivalentTo 'organism detection datum' and ('is_specified_output_of' some 'cerebrospinal fluid microbiology assay') http://purl.obolibrary.org/obo/OBI_0003252 cerebrospinal fluid assay datum 'cerebrospinal fluid assay datum' SubClassOf 'data item' 'cerebrospinal fluid assay datum' EquivalentTo 'data item' and ('is_specified_output_of' some 'cerebrospinal fluid assay') http://purl.obolibrary.org/obo/OBI_0003255 endotracheal tube aspirate microbiology datum 'endotracheal tube aspirate microbiology datum' SubClassOf 'organism detection datum' 'endotracheal tube aspirate microbiology datum' EquivalentTo 'organism detection datum' and ('is_specified_output_of' some 'endotracheal tube aspirate microbiology assay') 'endotracheal tube aspirate microbiology datum' SubClassOf 'endotracheal aspirate assay datum' http://purl.obolibrary.org/obo/OBI_0003254 endotracheal aspirate assay datum 'endotracheal aspirate assay datum' SubClassOf 'data item' 'endotracheal aspirate assay datum' EquivalentTo 'data item' and ('is_specified_output_of' some 'endotracheal aspirate assay') http://purl.obolibrary.org/obo/OBI_0003268 bacteria in induced sputum datum 'bacteria in induced sputum datum' EquivalentTo 'induced sputum microbiology datum' and ('is about' some 'Bacteria') 'bacteria in induced sputum datum' SubClassOf 'induced sputum microbiology datum' http://purl.obolibrary.org/obo/OBI_0003267 eukaryota in urine datum 'eukaryota in urine datum' SubClassOf 'urine microbiology datum' 'eukaryota in urine datum' EquivalentTo 'urine microbiology datum' and ('is about' some 'Eukaryota') http://purl.obolibrary.org/obo/OBI_0003269 eukaryota in induced sputum datum 'eukaryota in induced sputum datum' EquivalentTo 'induced sputum microbiology datum' and ('is about' some 'Eukaryota') 'eukaryota in induced sputum datum' SubClassOf 'induced sputum microbiology datum' http://purl.obolibrary.org/obo/UBERON_0001728 nasopharynx 'nasopharynx' SubClassOf 'proximo-distal subdivision of respiratory tract' http://purl.obolibrary.org/obo/OBI_0003260 umbilical cord blood microbiology datum 'umbilical cord blood microbiology datum' EquivalentTo 'organism detection datum' and ('is_specified_output_of' some 'umbilical cord blood microbiology assay') 'umbilical cord blood microbiology datum' SubClassOf 'blood microbiology datum' 'umbilical cord blood microbiology datum' SubClassOf 'umbilical cord blood assay datum' http://purl.obolibrary.org/obo/OBI_0003262 virus in blood datum 'virus in blood datum' EquivalentTo 'blood microbiology datum' and ('is about' some 'Viruses') 'virus in blood datum' SubClassOf 'blood microbiology datum' http://purl.obolibrary.org/obo/OBI_0003261 bacteria in blood datum 'bacteria in blood datum' EquivalentTo 'blood microbiology datum' and ('is about' some 'Bacteria') 'bacteria in blood datum' SubClassOf 'blood microbiology datum' http://purl.obolibrary.org/obo/OBI_0003264 bacteria in feces datum 'bacteria in feces datum' SubClassOf 'feces microbiology datum' 'bacteria in feces datum' EquivalentTo 'feces microbiology datum' and ('is about' some 'Bacteria') http://purl.obolibrary.org/obo/UBERON_0001729 oropharynx 'oropharynx' SubClassOf 'subdivision of tube' 'oropharynx' SubClassOf 'endoderm-derived structure' http://purl.obolibrary.org/obo/OBI_0003263 eukaryota in blood datum 'eukaryota in blood datum' EquivalentTo 'blood microbiology datum' and ('is about' some 'Eukaryota') 'eukaryota in blood datum' SubClassOf 'blood microbiology datum' http://purl.obolibrary.org/obo/OBI_0003266 virus in feces datum 'virus in feces datum' EquivalentTo 'feces microbiology datum' and ('is about' some 'Viruses') 'virus in feces datum' SubClassOf 'feces microbiology datum' http://purl.obolibrary.org/obo/OBI_0003265 eukaryota in feces datum 'eukaryota in feces datum' EquivalentTo 'feces microbiology datum' and ('is about' some 'Eukaryota') 'eukaryota in feces datum' SubClassOf 'feces microbiology datum' http://purl.obolibrary.org/obo/OBI_0003279 eukaryota in pleural fluid datum 'eukaryota in pleural fluid datum' SubClassOf 'pleural fluid microbiology datum' 'eukaryota in pleural fluid datum' EquivalentTo 'pleural fluid microbiology datum' and ('is about' some 'Eukaryota') http://purl.obolibrary.org/obo/OBI_0003278 bacteria in pleural fluid datum 'bacteria in pleural fluid datum' SubClassOf 'pleural fluid microbiology datum' 'bacteria in pleural fluid datum' EquivalentTo 'pleural fluid microbiology datum' and ('is about' some 'Bacteria') http://purl.obolibrary.org/obo/OBI_0003039 feces microbiology assay 'feces microbiology assay' SubClassOf 'feces assay' 'feces microbiology assay' SubClassOf ('realizes' some ('evaluant role' and ('role of' some 'feces specimen'))) and ('has_specified_input' some ('feces specimen' and ('has role' some 'evaluant role'))) 'feces microbiology assay' SubClassOf ('realizes' some ('measurand role' and ('characteristic of' some 'organism'))) and ('has_specified_input' some 'organism') 'feces microbiology assay' SubClassOf 'organism detection assay' http://purl.obolibrary.org/obo/OBI_0003271 bacteria in endotracheal tube aspirate datum 'bacteria in endotracheal tube aspirate datum' EquivalentTo 'endotracheal tube aspirate microbiology datum' and ('is about' some 'Bacteria') 'bacteria in endotracheal tube aspirate datum' SubClassOf 'endotracheal tube aspirate microbiology datum' http://purl.obolibrary.org/obo/OBI_0003270 virus in induced sputum datum 'virus in induced sputum datum' SubClassOf 'induced sputum microbiology datum' 'virus in induced sputum datum' EquivalentTo 'induced sputum microbiology datum' and ('is about' some 'Viruses') http://purl.obolibrary.org/obo/OBI_0003273 eukaryota in lung datum 'eukaryota in lung datum' SubClassOf 'lung microbiology datum' 'eukaryota in lung datum' EquivalentTo 'lung microbiology datum' and ('is about' some 'Eukaryota') http://purl.obolibrary.org/obo/OBI_0003272 bacteria in lung datum 'bacteria in lung datum' SubClassOf 'lung microbiology datum' 'bacteria in lung datum' EquivalentTo 'lung microbiology datum' and ('is about' some 'Bacteria') http://purl.obolibrary.org/obo/OBI_0003275 bacteria in nasopharyngeal or oropharyngeal swab datum 'bacteria in nasopharyngeal or oropharyngeal swab datum' EquivalentTo 'nasopharyngeal or oropharyngeal swab microbiology datum' and ('is about' some 'Bacteria') 'bacteria in nasopharyngeal or oropharyngeal swab datum' SubClassOf 'nasopharyngeal or oropharyngeal swab microbiology datum' http://purl.obolibrary.org/obo/OBI_0003274 virus in lung datum 'virus in lung datum' SubClassOf 'lung microbiology datum' 'virus in lung datum' EquivalentTo 'lung microbiology datum' and ('is about' some 'Viruses') http://purl.obolibrary.org/obo/OBI_0003277 virus in nasopharyngeal or oropharyngeal swab datum 'virus in nasopharyngeal or oropharyngeal swab datum' EquivalentTo 'nasopharyngeal or oropharyngeal swab microbiology datum' and ('is about' some 'Viruses') 'virus in nasopharyngeal or oropharyngeal swab datum' SubClassOf 'nasopharyngeal or oropharyngeal swab microbiology datum' http://purl.obolibrary.org/obo/OBI_0003276 eukaryota in nasopharyngeal or oropharyngeal swab datum 'eukaryota in nasopharyngeal or oropharyngeal swab datum' SubClassOf 'nasopharyngeal or oropharyngeal swab microbiology datum' 'eukaryota in nasopharyngeal or oropharyngeal swab datum' EquivalentTo 'nasopharyngeal or oropharyngeal swab microbiology datum' and ('is about' some 'Eukaryota') http://purl.obolibrary.org/obo/OBI_0003280 virus in pleural fluid datum 'virus in pleural fluid datum' SubClassOf 'pleural fluid microbiology datum' 'virus in pleural fluid datum' EquivalentTo 'pleural fluid microbiology datum' and ('is about' some 'Viruses') http://purl.obolibrary.org/obo/OBI_1110108 material to be added 'material to be added' SubClassOf 'material entity' 'material to be added' EquivalentTo 'has role' some 'material to be added role' http://purl.obolibrary.org/obo/OBI_0001158 age measurement assay 'age measurement assay' SubClassOf 'has_specified_output' some 'age measurement datum' 'age measurement assay' SubClassOf 'assay' http://www.geneontology.org/formats/oboInOwl#Synonym http://www.geneontology.org/formats/oboInOwl#Synonym SubClassOf 'data about an ontology part' http://purl.obolibrary.org/obo/OBI_0000075 diagnosis textual entity 'diagnosis textual entity' SubClassOf 'textual entity' http://purl.obolibrary.org/obo/CHEBI_16670 peptide 'peptide' SubClassOf 'macromolecule' http://www.geneontology.org/formats/oboInOwl#Definition http://www.geneontology.org/formats/oboInOwl#Definition SubClassOf 'data about an ontology part' http://purl.obolibrary.org/obo/OBI_0000245 organization 'organization' SubClassOf 'material entity' http://purl.obolibrary.org/obo/OBI_0000411 cloning vector role 'cloning vector role' SubClassOf ('inheres in' some 'nucleic acid') and ('realized in' only 'recombinant vector cloning') 'cloning vector role' SubClassOf 'material to be added role' http://purl.obolibrary.org/obo/OBI_0000416 cloning insert role 'cloning insert role' SubClassOf 'role' http://purl.obolibrary.org/obo/PATO_0000186 behavioral quality 'behavioral quality' SubClassOf 'quality of a single physical entity' http://purl.obolibrary.org/obo/PATO_0001237 quality of a single physical entity 'quality of a single physical entity' SubClassOf 'quality' http://www.geneontology.org/formats/oboInOwl#DbXref http://www.geneontology.org/formats/oboInOwl#DbXref SubClassOf 'data about an ontology part' http://purl.obolibrary.org/obo/OBI_0000731 recombinant vector 'recombinant vector' EquivalentTo 'material entity' and ('is_specified_output_of' some 'recombinant vector cloning') 'recombinant vector' SubClassOf 'processed material' http://purl.obolibrary.org/obo/OBI_0000737 cloning vector 'cloning vector' EquivalentTo 'material entity' and ('has role' some 'cloning vector role') 'cloning vector' SubClassOf 'is_specified_output_of' some 'material processing' 'cloning vector' SubClassOf 'material to be added' 'cloning vector' SubClassOf 'processed material' http://purl.obolibrary.org/obo/OBI_0000736 single fragment library 'single fragment library' SubClassOf 'processed material' http://purl.obolibrary.org/obo/OBI_1000029 phage display library 'phage display library' SubClassOf 'recombinant vector' 'phage display library' SubClassOf 'is_specified_output_of' some 'recombinant vector cloning' 'phage display library' SubClassOf 'has grain' some 'recombinant vector' http://purl.obolibrary.org/obo/OBI_0000988 performing a diagnosis 'performing a diagnosis' SubClassOf 'has_specified_output' some 'diagnosis textual entity' 'performing a diagnosis' SubClassOf 'data transformation' http://purl.obolibrary.org/obo/OBI_0000944 handedness assay 'handedness assay' SubClassOf 'assay' 'handedness assay' EquivalentTo 'assay' and ('has_specified_output' some ('measurement datum' and ('is about' some 'handedness'))) http://purl.obolibrary.org/obo/OBI_0000711 library preparation 'library preparation' SubClassOf 'achieves_planned_objective' some 'material transformation objective' 'library preparation' SubClassOf 'has_specified_output' some ('cDNA library' or 'paired-end library' or 'single fragment library' or 'phage display library') 'library preparation' SubClassOf 'has_specified_input' some ('deoxyribonucleic acid' or 'double-stranded DNA') 'library preparation' SubClassOf 'material processing' http://purl.obolibrary.org/obo/CHEBI_33697 ribonucleic acid 'ribonucleic acid' SubClassOf 'nucleic acid' http://purl.obolibrary.org/obo/OBI_0000713 GenePattern software 'GenePattern software' SubClassOf 'software' http://purl.obolibrary.org/obo/OBI_0000722 paired-end library 'paired-end library' SubClassOf 'processed material' http://purl.obolibrary.org/obo/IAO_0000098 data format specification 'data format specification' SubClassOf 'directive information entity' http://www.geneontology.org/formats/oboInOwl#SynonymType http://www.geneontology.org/formats/oboInOwl#SynonymType SubClassOf 'data about an ontology part' http://www.geneontology.org/formats/oboInOwl#Subset http://www.geneontology.org/formats/oboInOwl#Subset EquivalentTo {'core'} http://www.geneontology.org/formats/oboInOwl#Subset SubClassOf 'data about an ontology part' http://purl.obolibrary.org/obo/OBI_0200198 tandem mass spectrometry 'tandem mass spectrometry' SubClassOf 'achieves_planned_objective' some 'spectrum analysis objective' 'tandem mass spectrometry' SubClassOf 'mass spectrometry analysis' http://purl.obolibrary.org/obo/PR_000000001 protein 'protein' SubClassOf 'peptide' http://purl.obolibrary.org/obo/OBI_0001001 Edinburgh handedness assay 'Edinburgh handedness assay' SubClassOf 'handedness assay' 'Edinburgh handedness assay' SubClassOf 'has_specified_input' value 'Edingburgh handedness inventory' 'Edinburgh handedness assay' SubClassOf 'has_specified_output' some 'Edinburgh score' http://purl.obolibrary.org/obo/OBI_0001000 questionnaire 'questionnaire' SubClassOf 'document' http://purl.obolibrary.org/obo/OBI_0000164 cDNA library 'cDNA library' SubClassOf 'recombinant vector' 'cDNA library' SubClassOf 'is_specified_output_of' some 'recombinant vector cloning' 'cDNA library' SubClassOf 'has grain' some 'recombinant vector' http://purl.obolibrary.org/obo/IAO_0000579 centrally registered identifier registry 'centrally registered identifier registry' SubClassOf 'data set' http://purl.obolibrary.org/obo/PATO_0002204 ambidextrous handedness 'ambidextrous handedness' SubClassOf 'handedness' http://purl.obolibrary.org/obo/PATO_0002203 right handedness 'right handedness' SubClassOf 'handedness' http://purl.obolibrary.org/obo/PATO_0002202 left handedness 'left handedness' SubClassOf 'handedness' http://purl.obolibrary.org/obo/OBI_0000626 DNA sequencing 'DNA sequencing' SubClassOf 'has participant' some 'DNA sequencer' 'DNA sequencing' EquivalentTo ('has_specified_input' some ('deoxyribonucleic acid' and ('has role' some 'evaluant role'))) and ('has_specified_output' some 'DNA sequence data') 'DNA sequencing' SubClassOf 'achieves_planned_objective' some 'assay objective' 'DNA sequencing' SubClassOf 'sequencing assay' http://purl.obolibrary.org/obo/OBI_0001959 sequencing library multiplexing 'sequencing library multiplexing' SubClassOf 'material processing' http://purl.obolibrary.org/obo/OBI_0001967 multiplexing sequence identifier 'multiplexing sequence identifier' SubClassOf 'is_specified_input_of' some ('library preparation' and 'sequencing library multiplexing') 'multiplexing sequence identifier' SubClassOf 'deoxyribonucleic acid' http://purl.obolibrary.org/obo/OBI_0001970 multiplexed sequencing library 'multiplexed sequencing library' SubClassOf 'is_specified_output_of' some ('library preparation' and 'sequencing library multiplexing') 'multiplexed sequencing library' SubClassOf 'processed material' 'multiplexed sequencing library' SubClassOf 'has part' some 'multiplexing sequence identifier' http://purl.obolibrary.org/obo/OBI_0600064 recombinant vector cloning 'recombinant vector cloning' SubClassOf 'has_specified_input' some ('material entity' and ('has role' some 'cloning insert role')) 'recombinant vector cloning' SubClassOf 'material processing' 'recombinant vector cloning' SubClassOf 'achieves_planned_objective' some 'material transformation objective' 'recombinant vector cloning' SubClassOf 'has_specified_output' some 'recombinant vector' 'recombinant vector cloning' SubClassOf 'realizes' some 'cloning vector role' 'recombinant vector cloning' SubClassOf 'has_specified_input' some 'cloning vector' http://purl.obolibrary.org/obo/OBI_0600047 sequencing assay 'sequencing assay' SubClassOf 'assay' 'sequencing assay' SubClassOf 'has_specified_input' some (('deoxyribonucleic acid' or 'ribonucleic acid' or 'protein') and ('has role' some 'evaluant role')) 'sequencing assay' EquivalentTo ('has_specified_output' some 'sequence data') and ('achieves_planned_objective' some 'assay objective') http://purl.obolibrary.org/obo/STATO_0000075 rarefaction curve 'rarefaction curve' SubClassOf 'line graph' http://purl.obolibrary.org/obo/CHEBI_4705 double-stranded DNA 'double-stranded DNA' SubClassOf 'deoxyribonucleic acid' http://purl.obolibrary.org/obo/OBI_0400103 DNA sequencer 'DNA sequencer' SubClassOf 'has function' some 'measure function' 'DNA sequencer' SubClassOf 'measurement device'