<?xml version="1.0"?>
<diffReport>
<diffSummary>
<numberChangedClasses>
95
</numberChangedClasses>
<numberNewClasses>
269
</numberNewClasses>
<numberDeletedClasses>
8
</numberDeletedClasses>
</diffSummary>
<changedClasses>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_1582</classIRI>
<classLabel>Lactobacillus casei</classLabel>
<deletedAxiom>&apos;Lactobacillus casei&apos; SubClassOf &apos;Lactobacillus&apos;</deletedAxiom>
<newAxiom>&apos;Lactobacillus casei&apos; SubClassOf http://purl.obolibrary.org/obo/NCBITaxon_2759736</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_84163</classIRI>
<classLabel>Cryptobacterium curtum</classLabel>
<deletedAxiom>&apos;Cryptobacterium curtum&apos; SubClassOf &apos;Eggerthellaceae&apos;</deletedAxiom>
<newAxiom>&apos;Cryptobacterium curtum&apos; SubClassOf http://purl.obolibrary.org/obo/NCBITaxon_84162</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_65402</classIRI>
<classLabel>Acidaminobacter</classLabel>
<deletedAxiom>&apos;Acidaminobacter&apos; SubClassOf &apos;Clostridiales incertae sedis&apos;</deletedAxiom>
<newAxiom>&apos;Acidaminobacter&apos; SubClassOf http://purl.obolibrary.org/obo/NCBITaxon_3082720</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000128</classIRI>
<classLabel>depletion of Ruminococcaceae in gout human gut</classLabel>
<deletedAxiom>&apos;depletion of Ruminococcaceae in gout human gut&apos; SubClassOf &apos;has microbe depleted in diseased host&apos; some &apos;Ruminococcaceae&apos;</deletedAxiom>
<deletedAxiom>&apos;depletion of Ruminococcaceae in gout human gut&apos; EquivalentTo &apos;has participant&apos; some 
(&apos;Ruminococcaceae&apos; and (&apos;microbial population phenotype in host&apos; some &apos;decreased organism quantity compared with healthy controls&apos;) and (&apos;located in&apos; some 
(&apos;lower digestive tract&apos; and (&apos;part of&apos; some 
(&apos;Homo sapiens&apos; and (&apos;has disease&apos; some &apos;gout&apos;))))))</deletedAxiom>
<newAxiom>&apos;depletion of Ruminococcaceae in gout human gut&apos; EquivalentTo &apos;has participant&apos; some 
(http://purl.obolibrary.org/obo/NCBITaxon_216572 and (&apos;microbial population phenotype in host&apos; some &apos;decreased organism quantity compared with healthy controls&apos;) and (&apos;located in&apos; some 
(&apos;lower digestive tract&apos; and (&apos;part of&apos; some 
(&apos;Homo sapiens&apos; and (&apos;has disease&apos; some &apos;gout&apos;))))))</newAxiom>
<newAxiom>&apos;depletion of Ruminococcaceae in gout human gut&apos; SubClassOf &apos;has microbe depleted in diseased host&apos; some http://purl.obolibrary.org/obo/NCBITaxon_216572</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000129</classIRI>
<classLabel>expansion of Erysipelatoclostridium in gout human gut</classLabel>
<deletedAxiom>&apos;expansion of Erysipelatoclostridium in gout human gut&apos; SubClassOf &apos;has microbe expanded in diseased host&apos; some &apos;Erysipelatoclostridium&apos;</deletedAxiom>
<deletedAxiom>&apos;expansion of Erysipelatoclostridium in gout human gut&apos; EquivalentTo &apos;has participant&apos; some 
(&apos;Erysipelatoclostridium&apos; and (&apos;microbial population phenotype in host&apos; some &apos;increased organism quantity compared with healthy control&apos;) and (&apos;located in&apos; some 
(&apos;lower digestive tract&apos; and (&apos;part of&apos; some 
(&apos;Homo sapiens&apos; and (&apos;has disease&apos; some &apos;gout&apos;))))))</deletedAxiom>
<newAxiom>&apos;expansion of Erysipelatoclostridium in gout human gut&apos; SubClassOf &apos;has microbe expanded in diseased host&apos; some http://purl.obolibrary.org/obo/NCBITaxon_3025755</newAxiom>
<newAxiom>&apos;expansion of Erysipelatoclostridium in gout human gut&apos; EquivalentTo &apos;has participant&apos; some 
(http://purl.obolibrary.org/obo/NCBITaxon_3025755 and (&apos;microbial population phenotype in host&apos; some &apos;increased organism quantity compared with healthy control&apos;) and (&apos;located in&apos; some 
(&apos;lower digestive tract&apos; and (&apos;part of&apos; some 
(&apos;Homo sapiens&apos; and (&apos;has disease&apos; some &apos;gout&apos;))))))</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_29547</classIRI>
<classLabel>Epsilonproteobacteria</classLabel>
<deletedAxiom>&apos;Epsilonproteobacteria&apos; SubClassOf &apos;delta/epsilon subdivisions&apos;</deletedAxiom>
<newAxiom>&apos;Epsilonproteobacteria&apos; SubClassOf http://purl.obolibrary.org/obo/NCBITaxon_3379134</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000378</classIRI>
<classLabel>depletion of Ruminococcaceae in colorectal cancer human gut</classLabel>
<deletedAxiom>&apos;depletion of Ruminococcaceae in colorectal cancer human gut&apos; SubClassOf &apos;has microbe depleted in diseased host&apos; some &apos;Ruminococcaceae&apos;</deletedAxiom>
<deletedAxiom>&apos;depletion of Ruminococcaceae in colorectal cancer human gut&apos; EquivalentTo &apos;has participant&apos; some 
(&apos;Ruminococcaceae&apos; and (&apos;microbial population phenotype in host&apos; some &apos;decreased organism quantity compared with healthy controls&apos;) and (&apos;located in&apos; some 
(&apos;lower digestive tract&apos; and (&apos;part of&apos; some 
(&apos;Homo sapiens&apos; and (&apos;has disease&apos; some &apos;colorectal cancer&apos;))))))</deletedAxiom>
<newAxiom>&apos;depletion of Ruminococcaceae in colorectal cancer human gut&apos; EquivalentTo &apos;has participant&apos; some 
(http://purl.obolibrary.org/obo/NCBITaxon_216572 and (&apos;microbial population phenotype in host&apos; some &apos;decreased organism quantity compared with healthy controls&apos;) and (&apos;located in&apos; some 
(&apos;lower digestive tract&apos; and (&apos;part of&apos; some 
(&apos;Homo sapiens&apos; and (&apos;has disease&apos; some &apos;colorectal cancer&apos;))))))</newAxiom>
<newAxiom>&apos;depletion of Ruminococcaceae in colorectal cancer human gut&apos; SubClassOf &apos;has microbe depleted in diseased host&apos; some http://purl.obolibrary.org/obo/NCBITaxon_216572</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_119045</classIRI>
<classLabel>Methylobacteriaceae</classLabel>
<deletedAxiom>&apos;Methylobacteriaceae&apos; SubClassOf &apos;Proteobacteria&apos;</deletedAxiom>
<newAxiom>&apos;Methylobacteriaceae&apos; SubClassOf http://purl.obolibrary.org/obo/NCBITaxon_28211</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_216851</classIRI>
<classLabel>Faecalibacterium</classLabel>
<deletedAxiom>&apos;Faecalibacterium&apos; SubClassOf &apos;Ruminococcaceae&apos;</deletedAxiom>
<newAxiom>&apos;Faecalibacterium&apos; SubClassOf http://purl.obolibrary.org/obo/NCBITaxon_216572</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000100</classIRI>
<classLabel>expansion of Ruminococcaceae in AS human gut</classLabel>
<deletedAxiom>&apos;expansion of Ruminococcaceae in AS human gut&apos; SubClassOf &apos;has microbe expanded in diseased host&apos; some &apos;Ruminococcaceae&apos;</deletedAxiom>
<deletedAxiom>&apos;expansion of Ruminococcaceae in AS human gut&apos; EquivalentTo &apos;has participant&apos; some 
(&apos;Ruminococcaceae&apos; and (&apos;microbial population phenotype in host&apos; some &apos;increased organism quantity compared with healthy control&apos;) and (&apos;located in&apos; some 
(&apos;lower digestive tract&apos; and (&apos;part of&apos; some 
(&apos;Homo sapiens&apos; and (&apos;has disease&apos; some &apos;ankylosing spondylitis&apos;))))))</deletedAxiom>
<newAxiom>&apos;expansion of Ruminococcaceae in AS human gut&apos; SubClassOf &apos;has microbe expanded in diseased host&apos; some http://purl.obolibrary.org/obo/NCBITaxon_216572</newAxiom>
<newAxiom>&apos;expansion of Ruminococcaceae in AS human gut&apos; EquivalentTo &apos;has participant&apos; some 
(http://purl.obolibrary.org/obo/NCBITaxon_216572 and (&apos;microbial population phenotype in host&apos; some &apos;increased organism quantity compared with healthy control&apos;) and (&apos;located in&apos; some 
(&apos;lower digestive tract&apos; and (&apos;part of&apos; some 
(&apos;Homo sapiens&apos; and (&apos;has disease&apos; some &apos;ankylosing spondylitis&apos;))))))</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000346</classIRI>
<classLabel>depletion of Lachnospiraceae in colorectal cancer human gut</classLabel>
<deletedAxiom>&apos;depletion of Lachnospiraceae in colorectal cancer human gut&apos; SubClassOf &apos;depletion of Clostridiales in colorectal cancer human gut&apos;</deletedAxiom>
<newAxiom>&apos;depletion of Lachnospiraceae in colorectal cancer human gut&apos; SubClassOf &apos;depletion of Firmicutes in colorectal cancer human gut&apos;</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_165179</classIRI>
<classLabel>Prevotella copri</classLabel>
<deletedAxiom>&apos;Prevotella copri&apos; SubClassOf &apos;Prevotella&apos;</deletedAxiom>
<newAxiom>&apos;Prevotella copri&apos; SubClassOf http://purl.obolibrary.org/obo/NCBITaxon_2974251</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_821</classIRI>
<classLabel>Bacteroides vulgatus</classLabel>
<deletedAxiom>&apos;Bacteroides vulgatus&apos; SubClassOf &apos;Bacteroides&apos;</deletedAxiom>
<newAxiom>&apos;Bacteroides vulgatus&apos; SubClassOf http://purl.obolibrary.org/obo/NCBITaxon_909656</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_4892</classIRI>
<classLabel>Saccharomycetales</classLabel>
<deletedAxiom>&apos;Saccharomycetales&apos; SubClassOf &apos;saccharomyceta&apos;</deletedAxiom>
<newAxiom>&apos;Saccharomycetales&apos; SubClassOf http://purl.obolibrary.org/obo/NCBITaxon_147537</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_1382</classIRI>
<classLabel>Atopobium parvulum</classLabel>
<deletedAxiom>&apos;Atopobium parvulum&apos; SubClassOf &apos;Atopobium&apos;</deletedAxiom>
<newAxiom>&apos;Atopobium parvulum&apos; SubClassOf http://purl.obolibrary.org/obo/NCBITaxon_1643824</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_1380</classIRI>
<classLabel>Atopobium</classLabel>
<deletedAxiom>&apos;Atopobium&apos; SubClassOf &apos;Coriobacteriales&apos;</deletedAxiom>
<newAxiom>&apos;Atopobium&apos; SubClassOf http://purl.obolibrary.org/obo/NCBITaxon_1643824</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_538999</classIRI>
<classLabel>Clostridiales incertae sedis</classLabel>
<deletedAxiom>&apos;Clostridiales incertae sedis&apos; SubClassOf &apos;Clostridiales&apos;</deletedAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_128827</classIRI>
<classLabel>Erysipelotrichaceae</classLabel>
<deletedAxiom>&apos;Erysipelotrichaceae&apos; SubClassOf &apos;Firmicutes&apos;</deletedAxiom>
<newAxiom>&apos;Erysipelotrichaceae&apos; SubClassOf http://purl.obolibrary.org/obo/NCBITaxon_526525</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000144</classIRI>
<classLabel>depletion of Oscillibacter in gout human gut</classLabel>
<deletedAxiom>&apos;depletion of Oscillibacter in gout human gut&apos; SubClassOf &apos;gout human-gut microbiome interaction&apos;</deletedAxiom>
<newAxiom>&apos;depletion of Oscillibacter in gout human gut&apos; SubClassOf &apos;depletion of Ruminococcaceae in gout human gut&apos;</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_1598</classIRI>
<classLabel>Lactobacillus reuteri</classLabel>
<deletedAxiom>&apos;Lactobacillus reuteri&apos; SubClassOf &apos;Lactobacillus&apos;</deletedAxiom>
<newAxiom>&apos;Lactobacillus reuteri&apos; SubClassOf http://purl.obolibrary.org/obo/NCBITaxon_2742598</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000396</classIRI>
<classLabel>expansion of Bilophila in colorectal cancer human gut</classLabel>
<deletedAxiom>&apos;expansion of Bilophila in colorectal cancer human gut&apos; SubClassOf &apos;expansion of Proteobacteria in colorectal cancer human gut&apos;</deletedAxiom>
<newAxiom>&apos;expansion of Bilophila in colorectal cancer human gut&apos; SubClassOf &apos;colorectal cancer human-gut microbiome interaction&apos;</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_33882</classIRI>
<classLabel>Microbacterium</classLabel>
<deletedAxiom>&apos;Microbacterium&apos; SubClassOf &apos;Micrococcales&apos;</deletedAxiom>
<newAxiom>&apos;Microbacterium&apos; SubClassOf http://purl.obolibrary.org/obo/NCBITaxon_85023</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000186</classIRI>
<classLabel>expansion of Lactobacillus casei in arthritis rat gut</classLabel>
<deletedAxiom>&apos;expansion of Lactobacillus casei in arthritis rat gut&apos; SubClassOf &apos;expansion of Lactobacillus in arthritis rat gut&apos;</deletedAxiom>
<newAxiom>&apos;expansion of Lactobacillus casei in arthritis rat gut&apos; SubClassOf &apos;arthritis rat-gut microbiome interaction&apos;</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000187</classIRI>
<classLabel>expansion of Lactobacillus fermentum in arthritis rat gut</classLabel>
<deletedAxiom>&apos;expansion of Lactobacillus fermentum in arthritis rat gut&apos; SubClassOf &apos;expansion of Lactobacillus in arthritis rat gut&apos;</deletedAxiom>
<newAxiom>&apos;expansion of Lactobacillus fermentum in arthritis rat gut&apos; SubClassOf &apos;arthritis rat-gut microbiome interaction&apos;</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000188</classIRI>
<classLabel>expansion of Lactobacillus murinus in arthritis  rat gut</classLabel>
<deletedAxiom>&apos;expansion of Lactobacillus murinus in arthritis  rat gut&apos; SubClassOf &apos;expansion of Lactobacillus in arthritis rat gut&apos;</deletedAxiom>
<newAxiom>&apos;expansion of Lactobacillus murinus in arthritis  rat gut&apos; SubClassOf &apos;arthritis rat-gut microbiome interaction&apos;</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_194924</classIRI>
<classLabel>Desulfovibrionaceae</classLabel>
<deletedAxiom>&apos;Desulfovibrionaceae&apos; SubClassOf &apos;delta/epsilon subdivisions&apos;</deletedAxiom>
<newAxiom>&apos;Desulfovibrionaceae&apos; SubClassOf http://purl.obolibrary.org/obo/NCBITaxon_200940</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000198</classIRI>
<classLabel>expansion of Lachnospiraceae in SLE  mouse gut</classLabel>
<deletedAxiom>&apos;expansion of Lachnospiraceae in SLE  mouse gut&apos; SubClassOf &apos;expansion of Clostridiales in SLE  mouse gut&apos;</deletedAxiom>
<newAxiom>&apos;expansion of Lachnospiraceae in SLE  mouse gut&apos; SubClassOf &apos;SLE mouse-gut microbiome interaction&apos;</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000199</classIRI>
<classLabel>expansion of Ruminococcaceae in SLE  mouse gut</classLabel>
<deletedAxiom>&apos;expansion of Ruminococcaceae in SLE  mouse gut&apos; SubClassOf &apos;has participant&apos; some 
(&apos;Ruminococcaceae&apos; and ((&apos;part of&apos; some 
(&apos;Mus musculus&apos; and (&apos;has disposition&apos; some &apos;systemic lupus erythematosus&apos;))) and (&apos;located in&apos; some &apos;lower digestive tract&apos;)) and (&apos;has quality&apos; some &apos;increased organism quantity compared with healthy control&apos;))</deletedAxiom>
<deletedAxiom>&apos;expansion of Ruminococcaceae in SLE  mouse gut&apos; EquivalentTo &apos;has participant&apos; some 
(&apos;Ruminococcaceae&apos; and ((&apos;part of&apos; some 
(&apos;Mus musculus&apos; and (&apos;has disposition&apos; some &apos;systemic lupus erythematosus&apos;))) and (&apos;located in&apos; some &apos;lower digestive tract&apos;)) and (&apos;has quality&apos; some &apos;increased organism quantity compared with healthy control&apos;))</deletedAxiom>
<newAxiom>&apos;expansion of Ruminococcaceae in SLE  mouse gut&apos; SubClassOf &apos;has participant&apos; some 
(http://purl.obolibrary.org/obo/NCBITaxon_216572 and ((&apos;part of&apos; some 
(&apos;Mus musculus&apos; and (&apos;has disposition&apos; some &apos;systemic lupus erythematosus&apos;))) and (&apos;located in&apos; some &apos;lower digestive tract&apos;)) and (&apos;has quality&apos; some &apos;increased organism quantity compared with healthy control&apos;))</newAxiom>
<newAxiom>&apos;expansion of Ruminococcaceae in SLE  mouse gut&apos; EquivalentTo &apos;has participant&apos; some 
(http://purl.obolibrary.org/obo/NCBITaxon_216572 and ((&apos;part of&apos; some 
(&apos;Mus musculus&apos; and (&apos;has disposition&apos; some &apos;systemic lupus erythematosus&apos;))) and (&apos;located in&apos; some &apos;lower digestive tract&apos;)) and (&apos;has quality&apos; some &apos;increased organism quantity compared with healthy control&apos;))</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_1717</classIRI>
<classLabel>Corynebacterium diphtheriae</classLabel>
<deletedAxiom>&apos;Corynebacterium diphtheriae&apos; SubClassOf &apos;Corynebacteriales&apos;</deletedAxiom>
<newAxiom>&apos;Corynebacterium diphtheriae&apos; SubClassOf http://purl.obolibrary.org/obo/NCBITaxon_1716</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_12916</classIRI>
<classLabel>Acidovorax</classLabel>
<deletedAxiom>&apos;Acidovorax&apos; SubClassOf &apos;Burkholderiales&apos;</deletedAxiom>
<newAxiom>&apos;Acidovorax&apos; SubClassOf http://purl.obolibrary.org/obo/NCBITaxon_80864</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_100883</classIRI>
<classLabel>Coprobacillus</classLabel>
<deletedAxiom>&apos;Coprobacillus&apos; SubClassOf &apos;Erysipelotrichaceae&apos;</deletedAxiom>
<newAxiom>&apos;Coprobacillus&apos; SubClassOf http://purl.obolibrary.org/obo/NCBITaxon_2810280</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_1532</classIRI>
<classLabel>Blautia coccoides</classLabel>
<deletedAxiom>&apos;Blautia coccoides&apos; SubClassOf &apos;Blautia&apos;</deletedAxiom>
<deletedAxiom>&apos;Blautia coccoides&apos; SubClassOf &apos;microbe susceptibly depleted (compared to fibromyalgia patients) in gut of human with disease&apos; some &apos;rheumatoid arthritis&apos;</deletedAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_1531</classIRI>
<classLabel>[Clostridium] clostridioforme</classLabel>
<deletedAxiom>&apos;[Clostridium] clostridioforme&apos; SubClassOf &apos;Lachnoclostridium&apos;</deletedAxiom>
<newAxiom>&apos;[Clostridium] clostridioforme&apos; SubClassOf http://purl.obolibrary.org/obo/NCBITaxon_2719313</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_363265</classIRI>
<classLabel>Prevotella stercorea</classLabel>
<deletedAxiom>&apos;Prevotella stercorea&apos; SubClassOf &apos;Prevotella&apos;</deletedAxiom>
<newAxiom>&apos;Prevotella stercorea&apos; SubClassOf &apos;Prevotellaceae&apos;</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_946234</classIRI>
<classLabel>Flavonifractor</classLabel>
<deletedAxiom>&apos;Flavonifractor&apos; SubClassOf &apos;unclassified Clostridiales&apos;</deletedAxiom>
<newAxiom>&apos;Flavonifractor&apos; SubClassOf http://purl.obolibrary.org/obo/NCBITaxon_216572</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_11103</classIRI>
<classLabel>Hepacivirus C</classLabel>
<deletedAxiom>&apos;Hepacivirus C&apos; SubClassOf &apos;Viruses&apos;</deletedAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_46228</classIRI>
<classLabel>Ruminococcus lactaris</classLabel>
<deletedAxiom>&apos;Ruminococcus lactaris&apos; SubClassOf &apos;Ruminococcus&apos;</deletedAxiom>
<newAxiom>&apos;Ruminococcus lactaris&apos; SubClassOf &apos;Lachnospiraceae&apos;</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_1535326</classIRI>
<classLabel>Candida Debaryomycetaceae</classLabel>
<deletedAxiom>&apos;Candida Debaryomycetaceae&apos; SubClassOf &apos;Saccharomycetales&apos;</deletedAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_5481</classIRI>
<classLabel>Diutina rugosa</classLabel>
<deletedAxiom>&apos;Diutina rugosa&apos; SubClassOf &apos;Saccharomycetales&apos;</deletedAxiom>
<newAxiom>&apos;Diutina rugosa&apos; SubClassOf http://purl.obolibrary.org/obo/NCBITaxon_766764</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_5476</classIRI>
<classLabel>Candida albicans</classLabel>
<deletedAxiom>&apos;Candida albicans&apos; SubClassOf &apos;Candida Debaryomycetaceae&apos;</deletedAxiom>
<newAxiom>&apos;Candida albicans&apos; SubClassOf http://purl.obolibrary.org/obo/NCBITaxon_5475</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_84521</classIRI>
<classLabel>Dolosicoccus paucivorans</classLabel>
<deletedAxiom>&apos;Dolosicoccus paucivorans&apos; SubClassOf &apos;Lactobacillales&apos;</deletedAxiom>
<newAxiom>&apos;Dolosicoccus paucivorans&apos; SubClassOf http://purl.obolibrary.org/obo/NCBITaxon_186827</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_543314</classIRI>
<classLabel>Clostridiales Family XIII. Incertae Sedis</classLabel>
<deletedAxiom>&apos;Clostridiales Family XIII. Incertae Sedis&apos; SubClassOf &apos;Clostridiales incertae sedis&apos;</deletedAxiom>
<newAxiom>&apos;Clostridiales Family XIII. Incertae Sedis&apos; SubClassOf http://purl.obolibrary.org/obo/NCBITaxon_3082720</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_543311</classIRI>
<classLabel>Parvimonas</classLabel>
<deletedAxiom>&apos;Parvimonas&apos; SubClassOf &apos;Firmicutes&apos;</deletedAxiom>
<newAxiom>&apos;Parvimonas&apos; SubClassOf http://purl.obolibrary.org/obo/NCBITaxon_1570339</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_155615</classIRI>
<classLabel>Fusobacterium nucleatum subsp. vincentii</classLabel>
<deletedAxiom>&apos;Fusobacterium nucleatum subsp. vincentii&apos; SubClassOf &apos;Fusobacterium nucleatum&apos;</deletedAxiom>
<newAxiom>&apos;Fusobacterium nucleatum subsp. vincentii&apos; SubClassOf &apos;Fusobacterium&apos;</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_469</classIRI>
<classLabel>Acinetobacter</classLabel>
<deletedAxiom>&apos;Acinetobacter&apos; SubClassOf &apos;Pseudomonadales&apos;</deletedAxiom>
<newAxiom>&apos;Acinetobacter&apos; SubClassOf http://purl.obolibrary.org/obo/NCBITaxon_468</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_1783257</classIRI>
<classLabel>PVC group</classLabel>
<deletedAxiom>&apos;PVC group&apos; SubClassOf &apos;Bacteria&apos;</deletedAxiom>
<newAxiom>&apos;PVC group&apos; SubClassOf http://purl.obolibrary.org/obo/NCBITaxon_3379134</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_47715</classIRI>
<classLabel>Lactobacillus rhamnosus</classLabel>
<deletedAxiom>&apos;Lactobacillus rhamnosus&apos; SubClassOf &apos;Lactobacillus&apos;</deletedAxiom>
<newAxiom>&apos;Lactobacillus rhamnosus&apos; SubClassOf http://purl.obolibrary.org/obo/NCBITaxon_2759736</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_265570</classIRI>
<classLabel>Sulfurovum</classLabel>
<deletedAxiom>&apos;Sulfurovum&apos; SubClassOf &apos;Epsilonproteobacteria&apos;</deletedAxiom>
<newAxiom>&apos;Sulfurovum&apos; SubClassOf &apos;Campylobacterales&apos;</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_44259</classIRI>
<classLabel>Filifactor</classLabel>
<deletedAxiom>&apos;Filifactor&apos; SubClassOf &apos;Peptostreptococcaceae&apos;</deletedAxiom>
<newAxiom>&apos;Filifactor&apos; SubClassOf http://purl.obolibrary.org/obo/NCBITaxon_3082720</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000312</classIRI>
<classLabel>depletion of Anaerovorax in colorectal cancer human gut</classLabel>
<deletedAxiom>&apos;depletion of Anaerovorax in colorectal cancer human gut&apos; SubClassOf &apos;depletion of Clostridiales in colorectal cancer human gut&apos;</deletedAxiom>
<newAxiom>&apos;depletion of Anaerovorax in colorectal cancer human gut&apos; SubClassOf &apos;depletion of Firmicutes in colorectal cancer human gut&apos;</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_1224</classIRI>
<classLabel>Proteobacteria</classLabel>
<deletedAxiom>&apos;Proteobacteria&apos; SubClassOf &apos;Bacteria&apos;</deletedAxiom>
<newAxiom>&apos;Proteobacteria&apos; SubClassOf http://purl.obolibrary.org/obo/NCBITaxon_3379134</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_39496</classIRI>
<classLabel>Eubacterium ventriosum</classLabel>
<deletedAxiom>&apos;Eubacterium ventriosum&apos; SubClassOf &apos;Eubacteriaceae&apos;</deletedAxiom>
<newAxiom>&apos;Eubacterium ventriosum&apos; SubClassOf &apos;Eubacterium&apos;</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_976</classIRI>
<classLabel>Bacteroidetes</classLabel>
<deletedAxiom>&apos;Bacteroidetes&apos; SubClassOf &apos;Bacteria&apos;</deletedAxiom>
<newAxiom>&apos;Bacteroidetes&apos; SubClassOf http://purl.obolibrary.org/obo/NCBITaxon_3379134</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_186803</classIRI>
<classLabel>Lachnospiraceae</classLabel>
<deletedAxiom>&apos;Lachnospiraceae&apos; SubClassOf &apos;Clostridiales&apos;</deletedAxiom>
<newAxiom>&apos;Lachnospiraceae&apos; SubClassOf &apos;Clostridia&apos;</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_186804</classIRI>
<classLabel>Peptostreptococcaceae</classLabel>
<deletedAxiom>&apos;Peptostreptococcaceae&apos; SubClassOf &apos;Clostridiales&apos;</deletedAxiom>
<newAxiom>&apos;Peptostreptococcaceae&apos; SubClassOf http://purl.obolibrary.org/obo/NCBITaxon_3082720</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_31957</classIRI>
<classLabel>Propionibacteriaceae</classLabel>
<deletedAxiom>&apos;Propionibacteriaceae&apos; SubClassOf &apos;Actinobacteria class&apos;</deletedAxiom>
<newAxiom>&apos;Propionibacteriaceae&apos; SubClassOf http://purl.obolibrary.org/obo/NCBITaxon_85009</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_1263</classIRI>
<classLabel>Ruminococcus</classLabel>
<deletedAxiom>&apos;Ruminococcus&apos; SubClassOf &apos;Ruminococcaceae&apos;</deletedAxiom>
<newAxiom>&apos;Ruminococcus&apos; SubClassOf http://purl.obolibrary.org/obo/NCBITaxon_216572</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000293</classIRI>
<classLabel>expansion of Filifactor in colorectal cancer human gut</classLabel>
<deletedAxiom>&apos;expansion of Filifactor in colorectal cancer human gut&apos; SubClassOf &apos;expansion of Peptostreptococcaceae in colorectal cancer human gut&apos;</deletedAxiom>
<newAxiom>&apos;expansion of Filifactor in colorectal cancer human gut&apos; SubClassOf &apos;expansion of Clostridia in colorectal cancer human gut&apos;</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000296</classIRI>
<classLabel>expansion of Sulfurovum in colorectal cancer human gut</classLabel>
<deletedAxiom>&apos;expansion of Sulfurovum in colorectal cancer human gut&apos; SubClassOf &apos;expansion of Proteobacteria in colorectal cancer human gut&apos;</deletedAxiom>
<newAxiom>&apos;expansion of Sulfurovum in colorectal cancer human gut&apos; SubClassOf &apos;colorectal cancer human-gut microbiome interaction&apos;</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000264</classIRI>
<classLabel>expansion of Bacteroides plebeius in ERA human gut</classLabel>
<deletedAxiom>&apos;expansion of Bacteroides plebeius in ERA human gut&apos; SubClassOf &apos;expansion of Bacteroides in ERA human gut&apos;</deletedAxiom>
<newAxiom>&apos;expansion of Bacteroides plebeius in ERA human gut&apos; SubClassOf &apos;expansion of Bacteroidaceae in ERA human gut&apos;</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_1622</classIRI>
<classLabel>Lactobacillus murinus</classLabel>
<deletedAxiom>&apos;Lactobacillus murinus&apos; SubClassOf &apos;Lactobacillus&apos;</deletedAxiom>
<newAxiom>&apos;Lactobacillus murinus&apos; SubClassOf http://purl.obolibrary.org/obo/NCBITaxon_2767887</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_1624</classIRI>
<classLabel>Lactobacillus salivarius</classLabel>
<deletedAxiom>&apos;Lactobacillus salivarius&apos; SubClassOf &apos;Lactobacillus&apos;</deletedAxiom>
<newAxiom>&apos;Lactobacillus salivarius&apos; SubClassOf http://purl.obolibrary.org/obo/NCBITaxon_2767887</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000091</classIRI>
<classLabel>expansion of Prevotella copri in RA human gut</classLabel>
<deletedAxiom>&apos;expansion of Prevotella copri in RA human gut&apos; SubClassOf &apos;segregation of Prevotella or Bacteroides dominance in RA human gut&apos;</deletedAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_459786</classIRI>
<classLabel>Oscillibacter</classLabel>
<deletedAxiom>&apos;Oscillibacter&apos; SubClassOf &apos;Clostridiales&apos;</deletedAxiom>
<newAxiom>&apos;Oscillibacter&apos; SubClassOf http://purl.obolibrary.org/obo/NCBITaxon_216572</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_1613</classIRI>
<classLabel>Lactobacillus fermentum</classLabel>
<deletedAxiom>&apos;Lactobacillus fermentum&apos; SubClassOf &apos;Lactobacillus&apos;</deletedAxiom>
<newAxiom>&apos;Lactobacillus fermentum&apos; SubClassOf http://purl.obolibrary.org/obo/NCBITaxon_2742598</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_10407</classIRI>
<classLabel>Hepatitis B virus</classLabel>
<deletedAxiom>&apos;Hepatitis B virus&apos; SubClassOf &apos;Viruses&apos;</deletedAxiom>
<newAxiom>&apos;Hepatitis B virus&apos; SubClassOf http://purl.obolibrary.org/obo/NCBITaxon_2732514</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000077</classIRI>
<classLabel>human respiratory airway microbiome interaction</classLabel>
<newAxiom>&apos;human respiratory airway microbiome interaction&apos; SubClassOf &apos;located in&apos; some 
(&apos;respiratory airway&apos; and (&apos;part of&apos; some &apos;Homo sapiens&apos;))</newAxiom>
<newAxiom>&apos;human respiratory airway microbiome interaction&apos; SubClassOf &apos;independent continuant&apos;</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_1505663</classIRI>
<classLabel>Erysipelatoclostridium</classLabel>
<deletedAxiom>&apos;Erysipelatoclostridium&apos; SubClassOf &apos;Erysipelotrichaceae&apos;</deletedAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_76857</classIRI>
<classLabel>Fusobacterium nucleatum subsp. polymorphum</classLabel>
<deletedAxiom>&apos;Fusobacterium nucleatum subsp. polymorphum&apos; SubClassOf &apos;Fusobacterium nucleatum&apos;</deletedAxiom>
<newAxiom>&apos;Fusobacterium nucleatum subsp. polymorphum&apos; SubClassOf &apos;Fusobacterium&apos;</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_76859</classIRI>
<classLabel>Fusobacterium nucleatum subsp. animalis</classLabel>
<deletedAxiom>&apos;Fusobacterium nucleatum subsp. animalis&apos; SubClassOf &apos;Fusobacterium nucleatum&apos;</deletedAxiom>
<newAxiom>&apos;Fusobacterium nucleatum subsp. animalis&apos; SubClassOf &apos;Fusobacterium&apos;</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_1654</classIRI>
<classLabel>Actinomyces</classLabel>
<deletedAxiom>&apos;Actinomyces&apos; SubClassOf &apos;Actinobacteria class&apos;</deletedAxiom>
<newAxiom>&apos;Actinomyces&apos; SubClassOf http://purl.obolibrary.org/obo/NCBITaxon_2049</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_28135</classIRI>
<classLabel>Prevotella oris</classLabel>
<deletedAxiom>&apos;Prevotella oris&apos; SubClassOf &apos;Prevotella&apos;</deletedAxiom>
<newAxiom>&apos;Prevotella oris&apos; SubClassOf http://purl.obolibrary.org/obo/NCBITaxon_2974251</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_28112</classIRI>
<classLabel>Tannerella forsythia</classLabel>
<deletedAxiom>&apos;Tannerella forsythia&apos; SubClassOf &apos;Tannerellaceae&apos;</deletedAxiom>
<newAxiom>&apos;Tannerella forsythia&apos; SubClassOf http://purl.obolibrary.org/obo/NCBITaxon_195950</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_333367</classIRI>
<classLabel>[Clostridium] asparagiforme</classLabel>
<deletedAxiom>&apos;[Clostridium] asparagiforme&apos; SubClassOf &apos;Lachnoclostridium&apos;</deletedAxiom>
<newAxiom>&apos;[Clostridium] asparagiforme&apos; SubClassOf http://purl.obolibrary.org/obo/NCBITaxon_2719313</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_292632</classIRI>
<classLabel>Subdoligranulum</classLabel>
<deletedAxiom>&apos;Subdoligranulum&apos; SubClassOf &apos;Ruminococcaceae&apos;</deletedAxiom>
<newAxiom>&apos;Subdoligranulum&apos; SubClassOf http://purl.obolibrary.org/obo/NCBITaxon_216572</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_150247</classIRI>
<classLabel>Anoxybacillus</classLabel>
<deletedAxiom>&apos;Anoxybacillus&apos; SubClassOf &apos;Bacillaceae&apos;</deletedAxiom>
<newAxiom>&apos;Anoxybacillus&apos; SubClassOf http://purl.obolibrary.org/obo/NCBITaxon_1385</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_258514</classIRI>
<classLabel>Acetanaerobacterium</classLabel>
<deletedAxiom>&apos;Acetanaerobacterium&apos; SubClassOf &apos;Ruminococcaceae&apos;</deletedAxiom>
<newAxiom>&apos;Acetanaerobacterium&apos; SubClassOf http://purl.obolibrary.org/obo/NCBITaxon_216572</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_157</classIRI>
<classLabel>Treponema</classLabel>
<deletedAxiom>&apos;Treponema&apos; SubClassOf &apos;Spirochaetaceae&apos;</deletedAxiom>
<newAxiom>&apos;Treponema&apos; SubClassOf http://purl.obolibrary.org/obo/NCBITaxon_136</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_541000</classIRI>
<classLabel>Ruminococcaceae</classLabel>
<deletedAxiom>&apos;Ruminococcaceae&apos; SubClassOf &apos;Clostridiales&apos;</deletedAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_244127</classIRI>
<classLabel>Anaerotruncus</classLabel>
<deletedAxiom>&apos;Anaerotruncus&apos; SubClassOf &apos;Ruminococcaceae&apos;</deletedAxiom>
<newAxiom>&apos;Anaerotruncus&apos; SubClassOf http://purl.obolibrary.org/obo/NCBITaxon_216572</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_12721</classIRI>
<classLabel>Human immunodeficiency virus</classLabel>
<deletedAxiom>&apos;Human immunodeficiency virus&apos; SubClassOf &apos;Viruses&apos;</deletedAxiom>
<newAxiom>&apos;Human immunodeficiency virus&apos; SubClassOf http://purl.obolibrary.org/obo/NCBITaxon_2732514</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_137</classIRI>
<classLabel>Spirochaetaceae</classLabel>
<deletedAxiom>&apos;Spirochaetaceae&apos; SubClassOf &apos;Bacteria&apos;</deletedAxiom>
<newAxiom>&apos;Spirochaetaceae&apos; SubClassOf http://purl.obolibrary.org/obo/NCBITaxon_136</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_172042</classIRI>
<classLabel>Rothia aeria</classLabel>
<deletedAxiom>&apos;Rothia aeria&apos; SubClassOf &apos;Micrococcaceae&apos;</deletedAxiom>
<newAxiom>&apos;Rothia aeria&apos; SubClassOf http://purl.obolibrary.org/obo/NCBITaxon_32207</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000400</classIRI>
<classLabel>expansion of Campylobacter in colorectal cancer human gut</classLabel>
<deletedAxiom>&apos;expansion of Campylobacter in colorectal cancer human gut&apos; SubClassOf &apos;expansion of Proteobacteria in colorectal cancer human gut&apos;</deletedAxiom>
<newAxiom>&apos;expansion of Campylobacter in colorectal cancer human gut&apos; SubClassOf &apos;colorectal cancer human-gut microbiome interaction&apos;</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_192066</classIRI>
<classLabel>Neisseria sp.</classLabel>
<deletedAxiom>&apos;Neisseria sp.&apos; SubClassOf &apos;Neisseriaceae&apos;</deletedAxiom>
<newAxiom>&apos;Neisseria sp.&apos; SubClassOf http://purl.obolibrary.org/obo/NCBITaxon_482</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000411</classIRI>
<classLabel>expansion of Helicobacter in colorectal cancer human gut</classLabel>
<deletedAxiom>&apos;expansion of Helicobacter in colorectal cancer human gut&apos; SubClassOf &apos;expansion of Proteobacteria in colorectal cancer human gut&apos;</deletedAxiom>
<newAxiom>&apos;expansion of Helicobacter in colorectal cancer human gut&apos; SubClassOf &apos;colorectal cancer human-gut microbiome interaction&apos;</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000413</classIRI>
<classLabel>depletion of Blautia coccoides in RA human gut compared to fibromyalgia patients</classLabel>
<deletedAxiom>&apos;depletion of Blautia coccoides in RA human gut compared to fibromyalgia patients&apos; SubClassOf &apos;has microbe depleted in diseased host&apos; some &apos;Blautia coccoides&apos;</deletedAxiom>
<deletedAxiom>&apos;depletion of Blautia coccoides in RA human gut compared to fibromyalgia patients&apos; EquivalentTo &apos;has participant&apos; some 
(&apos;Blautia coccoides&apos; and (&apos;microbial population phenotype in host&apos; some &apos;decreased organism quantity compared with fibromyalgia patients&apos;) and (&apos;located in&apos; some 
(&apos;lower digestive tract&apos; and (&apos;part of&apos; some 
(&apos;Homo sapiens&apos; and (&apos;has disease&apos; some &apos;rheumatoid arthritis&apos;))))))</deletedAxiom>
<newAxiom>&apos;depletion of Blautia coccoides in RA human gut compared to fibromyalgia patients&apos; EquivalentTo &apos;has participant&apos; some 
(http://purl.obolibrary.org/obo/NCBITaxon_33035 and (&apos;microbial population phenotype in host&apos; some &apos;decreased organism quantity compared with fibromyalgia patients&apos;) and (&apos;located in&apos; some 
(&apos;lower digestive tract&apos; and (&apos;part of&apos; some 
(&apos;Homo sapiens&apos; and (&apos;has disease&apos; some &apos;rheumatoid arthritis&apos;))))))</newAxiom>
<newAxiom>&apos;depletion of Blautia coccoides in RA human gut compared to fibromyalgia patients&apos; SubClassOf &apos;has microbe depleted in diseased host&apos; some http://purl.obolibrary.org/obo/NCBITaxon_33035</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_68525</classIRI>
<classLabel>delta/epsilon subdivisions</classLabel>
<deletedAxiom>&apos;delta/epsilon subdivisions&apos; SubClassOf &apos;Proteobacteria&apos;</deletedAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_186813</classIRI>
<classLabel>unclassified Clostridiales</classLabel>
<deletedAxiom>&apos;unclassified Clostridiales&apos; SubClassOf &apos;Clostridiales&apos;</deletedAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_310297</classIRI>
<classLabel>Bacteroides plebeius</classLabel>
<deletedAxiom>&apos;Bacteroides plebeius&apos; SubClassOf &apos;Bacteroides&apos;</deletedAxiom>
<newAxiom>&apos;Bacteroides plebeius&apos; SubClassOf http://purl.obolibrary.org/obo/NCBITaxon_909656</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000455</classIRI>
<classLabel>expansion of F. nucleatum subsp. polymorphum in colorectal cancer human gut</classLabel>
<deletedAxiom>&apos;expansion of F. nucleatum subsp. polymorphum in colorectal cancer human gut&apos; SubClassOf &apos;expansion of F. nucleatum in colorectal cancer human gut&apos;</deletedAxiom>
<newAxiom>&apos;expansion of F. nucleatum subsp. polymorphum in colorectal cancer human gut&apos; SubClassOf &apos;expansion of Fusobacterium in colorectal cancer human gut&apos;</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000456</classIRI>
<classLabel>expansion of F. nucleatum subsp. vincentii in colorectal cancer human gut</classLabel>
<deletedAxiom>&apos;expansion of F. nucleatum subsp. vincentii in colorectal cancer human gut&apos; SubClassOf &apos;expansion of F. nucleatum in colorectal cancer human gut&apos;</deletedAxiom>
<newAxiom>&apos;expansion of F. nucleatum subsp. vincentii in colorectal cancer human gut&apos; SubClassOf &apos;expansion of Fusobacterium in colorectal cancer human gut&apos;</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000457</classIRI>
<classLabel>expansion of F. nucleatum subsp. animalis in colorectal cancer human gut</classLabel>
<deletedAxiom>&apos;expansion of F. nucleatum subsp. animalis in colorectal cancer human gut&apos; SubClassOf &apos;expansion of F. nucleatum in colorectal cancer human gut&apos;</deletedAxiom>
<newAxiom>&apos;expansion of F. nucleatum subsp. animalis in colorectal cancer human gut&apos; SubClassOf &apos;expansion of Fusobacterium in colorectal cancer human gut&apos;</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_186817</classIRI>
<classLabel>Bacillaceae</classLabel>
<deletedAxiom>&apos;Bacillaceae&apos; SubClassOf &apos;Bacilli&apos;</deletedAxiom>
<newAxiom>&apos;Bacillaceae&apos; SubClassOf http://purl.obolibrary.org/obo/NCBITaxon_1385</newAxiom>
</changedClass>
<changedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_33024</classIRI>
<classLabel>Phascolarctobacterium</classLabel>
<deletedAxiom>&apos;Phascolarctobacterium&apos; SubClassOf &apos;Negativicutes&apos;</deletedAxiom>
<newAxiom>&apos;Phascolarctobacterium&apos; SubClassOf http://purl.obolibrary.org/obo/NCBITaxon_909930</newAxiom>
</changedClass>
</changedClasses>
<newClasses>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_84162</classIRI>
<classLabel>Cryptobacterium</classLabel>
<newAxiom>'Cryptobacterium' SubClassOf 'Eggerthellaceae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_213121</classIRI>
<classLabel>Desulfobulbaceae</classLabel>
<newAxiom>'Desulfobulbaceae' SubClassOf 'Thermodesulfobacteriota'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_85023</classIRI>
<classLabel>Microbacteriaceae</classLabel>
<newAxiom>'Microbacteriaceae' SubClassOf 'Micrococcales'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_147537</classIRI>
<classLabel>Saccharomycotina</classLabel>
<newAxiom>'Saccharomycotina' SubClassOf 'saccharomyceta'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_28211</classIRI>
<classLabel>Alphaproteobacteria</classLabel>
<newAxiom>'Alphaproteobacteria' SubClassOf 'Pseudomonadota'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_213118</classIRI>
<classLabel>Desulfobacterales</classLabel>
<newAxiom>'Desulfobacterales' SubClassOf 'Thermodesulfobacteriota'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000580</classIRI>
<classLabel>depletion of Prevotellaceae in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'depletion of Prevotellaceae in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
<newAxiom>'depletion of Prevotellaceae in lung of COPD patient compared to healthy human' SubClassOf 'has microbe depleted in diseased host' some 'Prevotellaceae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000581</classIRI>
<classLabel>depletion of Acidaminococcaceae in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'depletion of Acidaminococcaceae in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
<newAxiom>'depletion of Acidaminococcaceae in lung of COPD patient compared to healthy human' SubClassOf 'has microbe depleted in diseased host' some 'Acidaminococcaceae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000582</classIRI>
<classLabel>expansion of Acinetobacter in lung of exacerbation COPD patient compared to stable COPD</classLabel>
<newAxiom>'expansion of Acinetobacter in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'bacterial change in lung of exacerbation COPD patient compared to stable COPD'</newAxiom>
<newAxiom>'expansion of Acinetobacter in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'has microbe expanded in diseased host' some 'Acinetobacter'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000583</classIRI>
<classLabel>expansion of Perlucidibaca in lung of exacerbation COPD patient compared to stable COPD</classLabel>
<newAxiom>'expansion of Perlucidibaca in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'has microbe expanded in diseased host' some 'Perlucidibaca'</newAxiom>
<newAxiom>'expansion of Perlucidibaca in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'bacterial change in lung of exacerbation COPD patient compared to stable COPD'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000584</classIRI>
<classLabel>expansion of Actinobacillus in lung of exacerbation COPD patient compared to stable COPD</classLabel>
<newAxiom>'expansion of Actinobacillus in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'bacterial change in lung of exacerbation COPD patient compared to stable COPD'</newAxiom>
<newAxiom>'expansion of Actinobacillus in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'has microbe expanded in diseased host' some 'Actinobacillus'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000585</classIRI>
<classLabel>expansion of Ehrlichia in lung of exacerbation COPD patient compared to stable COPD</classLabel>
<newAxiom>'expansion of Ehrlichia in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'bacterial change in lung of exacerbation COPD patient compared to stable COPD'</newAxiom>
<newAxiom>'expansion of Ehrlichia in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'has microbe expanded in diseased host' some 'Ehrlichia'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000586</classIRI>
<classLabel>expansion of Sphingomonas in lung of exacerbation COPD patient compared to stable COPD</classLabel>
<newAxiom>'expansion of Sphingomonas in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'bacterial change in lung of exacerbation COPD patient compared to stable COPD'</newAxiom>
<newAxiom>'expansion of Sphingomonas in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'has microbe expanded in diseased host' some 'Sphingomonas'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000587</classIRI>
<classLabel>expansion of Comamonas in lung of exacerbation COPD patient compared to stable COPD</classLabel>
<newAxiom>'expansion of Comamonas in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'bacterial change in lung of exacerbation COPD patient compared to stable COPD'</newAxiom>
<newAxiom>'expansion of Comamonas in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'has microbe expanded in diseased host' some 'Comamonas'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000588</classIRI>
<classLabel>expansion of Enterobacteriaceae in lung of exacerbation COPD patient compared to stable COPD</classLabel>
<newAxiom>'expansion of Enterobacteriaceae in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'has microbe expanded in diseased host' some 'Enterobacteriaceae'</newAxiom>
<newAxiom>'expansion of Enterobacteriaceae in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'bacterial change in lung of exacerbation COPD patient compared to stable COPD'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000589</classIRI>
<classLabel>expansion of Pseudomonas in lung of exacerbation COPD patient compared to stable COPD</classLabel>
<newAxiom>'expansion of Pseudomonas in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'bacterial change in lung of exacerbation COPD patient compared to stable COPD'</newAxiom>
<newAxiom>'expansion of Pseudomonas in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'has microbe expanded in diseased host' some 'Pseudomonas'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_526525</classIRI>
<classLabel>Erysipelotrichales</classLabel>
<newAxiom>'Erysipelotrichales' SubClassOf 'Bacillota'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000590</classIRI>
<classLabel>expansion of Moraxella in lung of exacerbation COPD patient compared to stable COPD</classLabel>
<newAxiom>'expansion of Moraxella in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'has microbe expanded in diseased host' some 'Moraxella'</newAxiom>
<newAxiom>'expansion of Moraxella in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'bacterial change in lung of exacerbation COPD patient compared to stable COPD'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000591</classIRI>
<classLabel>expansion of Haemophilus influenzae in lung of exacerbation COPD patient compared to stable COPD</classLabel>
<newAxiom>'expansion of Haemophilus influenzae in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'bacterial change in lung of exacerbation COPD patient compared to stable COPD'</newAxiom>
<newAxiom>'expansion of Haemophilus influenzae in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'has microbe expanded in diseased host' some 'Haemophilus influenzae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_1313</classIRI>
<classLabel>Streptococcus pneumoniae</classLabel>
<newAxiom>'Streptococcus pneumoniae' SubClassOf 'Streptococcus'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000592</classIRI>
<classLabel>depletion of Actinobacteria in lung of exacerbation COPD patient compared to stable COPD</classLabel>
<newAxiom>'depletion of Actinobacteria in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'bacterial change in lung of exacerbation COPD patient compared to stable COPD'</newAxiom>
<newAxiom>'depletion of Actinobacteria in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'has microbe depleted in diseased host' some 'Actinomycetota'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000593</classIRI>
<classLabel>depletion of Clostridia in lung of exacerbation COPD patient compared to stable COPD</classLabel>
<newAxiom>'depletion of Clostridia in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'has microbe depleted in diseased host' some 'Clostridia'</newAxiom>
<newAxiom>'depletion of Clostridia in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'bacterial change in lung of exacerbation COPD patient compared to stable COPD'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000594</classIRI>
<classLabel>depletion of Bacilli in lung of exacerbation COPD patient compared to stable COPD</classLabel>
<newAxiom>'depletion of Bacilli in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'has microbe depleted in diseased host' some 'Bacilli'</newAxiom>
<newAxiom>'depletion of Bacilli in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'bacterial change in lung of exacerbation COPD patient compared to stable COPD'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000595</classIRI>
<classLabel>depletion of Bacteroidia in lung of exacerbation COPD patient compared to stable COPD</classLabel>
<newAxiom>'depletion of Bacteroidia in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'has microbe depleted in diseased host' some 'Bacteroidia'</newAxiom>
<newAxiom>'depletion of Bacteroidia in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'bacterial change in lung of exacerbation COPD patient compared to stable COPD'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000596</classIRI>
<classLabel>depletion of Epsilonproteobacteria in lung of exacerbation COPD patient compared to stable COPD</classLabel>
<newAxiom>'depletion of Epsilonproteobacteria in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'has microbe depleted in diseased host' some 'Bacillaceae'</newAxiom>
<newAxiom>'depletion of Epsilonproteobacteria in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'bacterial change in lung of exacerbation COPD patient compared to stable COPD'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_85009</classIRI>
<classLabel>Propionibacteriales</classLabel>
<newAxiom>'Propionibacteriales' SubClassOf 'Actinomycetes'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000597</classIRI>
<classLabel>depletion of Moraxella  in lung of exacerbation COPD patient compared to stable COPD</classLabel>
<newAxiom>'depletion of Moraxella  in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'bacterial change in lung of exacerbation COPD patient compared to stable COPD'</newAxiom>
<newAxiom>'depletion of Moraxella  in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'has microbe depleted in diseased host' some 'Moraxella'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000598</classIRI>
<classLabel>depletion of Campylobacter in lung of exacerbation COPD patient compared to stable COPD</classLabel>
<newAxiom>'depletion of Campylobacter in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'bacterial change in lung of exacerbation COPD patient compared to stable COPD'</newAxiom>
<newAxiom>'depletion of Campylobacter in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'has microbe depleted in diseased host' some 'Campylobacter'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000599</classIRI>
<classLabel>depletion of Spirochaetota in lung of exacerbation COPD patient compared to stable COPD</classLabel>
<newAxiom>'depletion of Spirochaetota in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'bacterial change in lung of exacerbation COPD patient compared to stable COPD'</newAxiom>
<newAxiom>'depletion of Spirochaetota in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'has microbe depleted in diseased host' some 'Spirochaetota'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_1385</classIRI>
<classLabel>Bacillales</classLabel>
<newAxiom>'Bacillales' SubClassOf 'Bacilli'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_1378</classIRI>
<classLabel>Gemella</classLabel>
<newAxiom>'Gemella' SubClassOf 'Bacillales'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_830</classIRI>
<classLabel>Butyrivibrio</classLabel>
<newAxiom>'Butyrivibrio' SubClassOf 'Lachnospiraceae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_53460</classIRI>
<classLabel>Nakamurella</classLabel>
<newAxiom>'Nakamurella' SubClassOf 'Nakamurellaceae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_85030</classIRI>
<classLabel>Geodermatophilaceae</classLabel>
<newAxiom>'Geodermatophilaceae' SubClassOf 'Actinomycetes'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_85031</classIRI>
<classLabel>Nakamurellaceae</classLabel>
<newAxiom>'Nakamurellaceae' SubClassOf 'Actinomycetes'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_78535</classIRI>
<classLabel>Streptococcus viridans</classLabel>
<newAxiom>'Streptococcus viridans' SubClassOf 'Streptococcus'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_33877</classIRI>
<classLabel>Agromyces</classLabel>
<newAxiom>'Agromyces' SubClassOf 'Microbacteriaceae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/UBERON_0002048</classIRI>
<classLabel>lung</classLabel>
<newAxiom>'lung' SubClassOf 'organ'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_1720</classIRI>
<classLabel>Corynebacterium sp.</classLabel>
<newAxiom>'Corynebacterium sp.' SubClassOf 'Corynebacterium'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_1853550</classIRI>
<classLabel>[Candida] sp.</classLabel>
<newAxiom>'[Candida] sp.' SubClassOf 'Saccharomycetales'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_1716</classIRI>
<classLabel>Corynebacterium</classLabel>
<newAxiom>'Corynebacterium' SubClassOf 'Mycobacteriales'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_3082720</classIRI>
<classLabel>Peptostreptococcales</classLabel>
<newAxiom>'Peptostreptococcales' SubClassOf 'Clostridia'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_40324</classIRI>
<classLabel>Stenotrophomonas maltophilia</classLabel>
<newAxiom>'Stenotrophomonas maltophilia' SubClassOf 'Gammaproteobacteria'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_3025755</classIRI>
<classLabel>Thomasclavelia</classLabel>
<newAxiom>'Thomasclavelia' SubClassOf 'Coprobacillaceae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_1570339</classIRI>
<classLabel>Peptoniphilaceae</classLabel>
<newAxiom>'Peptoniphilaceae' SubClassOf 'Bacillota'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_2759736</classIRI>
<classLabel>Lacticaseibacillus</classLabel>
<newAxiom>'Lacticaseibacillus' SubClassOf 'Lactobacillaceae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_35783</classIRI>
<classLabel>Enterococcus sp.</classLabel>
<newAxiom>'Enterococcus sp.' SubClassOf 'Enterococcus'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_2974251</classIRI>
<classLabel>Segatella</classLabel>
<newAxiom>'Segatella' SubClassOf 'Prevotellaceae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_287</classIRI>
<classLabel>Pseudomonas aeruginosa</classLabel>
<newAxiom>'Pseudomonas aeruginosa' SubClassOf 'Pseudomonas'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_5475</classIRI>
<classLabel>Candida</classLabel>
<newAxiom>'Candida' SubClassOf 'Debaryomycetaceae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_283</classIRI>
<classLabel>Comamonas</classLabel>
<newAxiom>'Comamonas' SubClassOf 'Comamonadaceae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_484</classIRI>
<classLabel>Neisseria flavescens</classLabel>
<newAxiom>'Neisseria flavescens' SubClassOf 'Neisseria'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_32207</classIRI>
<classLabel>Rothia high G+C Gram-positive bacteria</classLabel>
<newAxiom>'Rothia high G+C Gram-positive bacteria' SubClassOf 'Micrococcaceae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_2742598</classIRI>
<classLabel>Limosilactobacillus</classLabel>
<newAxiom>'Limosilactobacillus' SubClassOf 'Lactobacillaceae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000520</classIRI>
<classLabel>expansion of Streptococcaceae in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Streptococcaceae in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Streptococcaceae'</newAxiom>
<newAxiom>'expansion of Streptococcaceae in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000521</classIRI>
<classLabel>expansion of Streptococcus in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Streptococcus in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Streptococcus'</newAxiom>
<newAxiom>'expansion of Streptococcus in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000522</classIRI>
<classLabel>expansion of Aerococcaceae in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Aerococcaceae in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
<newAxiom>'expansion of Aerococcaceae in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Aerococcaceae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_468</classIRI>
<classLabel>Moraxellaceae</classLabel>
<newAxiom>'Moraxellaceae' SubClassOf 'Gammaproteobacteria'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000523</classIRI>
<classLabel>expansion of Abiotrophia in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Abiotrophia in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Abiotrophia'</newAxiom>
<newAxiom>'expansion of Abiotrophia in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000524</classIRI>
<classLabel>expansion of Erysipelotrichales in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Erysipelotrichales in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Erysipelotrichales'</newAxiom>
<newAxiom>'expansion of Erysipelotrichales in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000525</classIRI>
<classLabel>expansion of Erysipelotrichaceae in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Erysipelotrichaceae in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
<newAxiom>'expansion of Erysipelotrichaceae in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Erysipelotrichaceae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000526</classIRI>
<classLabel>expansion of Bulleidia in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Bulleidia in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Bulleidia'</newAxiom>
<newAxiom>'expansion of Bulleidia in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000527</classIRI>
<classLabel>expansion of Solobacterium in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Solobacterium in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
<newAxiom>'expansion of Solobacterium in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Solobacterium'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_661182</classIRI>
<classLabel>Perlucidibaca</classLabel>
<newAxiom>'Perlucidibaca' SubClassOf 'Pseudomonadales'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000528</classIRI>
<classLabel>expansion of Veillonellaceae in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Veillonellaceae in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
<newAxiom>'expansion of Veillonellaceae in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Veillonellaceae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000529</classIRI>
<classLabel>expansion of Dialister in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Dialister in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Dialister'</newAxiom>
<newAxiom>'expansion of Dialister in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_470</classIRI>
<classLabel>Acinetobacter baumannii</classLabel>
<newAxiom>'Acinetobacter baumannii' SubClassOf 'Acinetobacter'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_475</classIRI>
<classLabel>Moraxella</classLabel>
<newAxiom>'Moraxella' SubClassOf 'Moraxellaceae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000530</classIRI>
<classLabel>expansion of Veillonella in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Veillonella in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
<newAxiom>'expansion of Veillonella in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Veillonella'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000531</classIRI>
<classLabel>expansion of Selenomonas in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Selenomonas in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Selenomonas'</newAxiom>
<newAxiom>'expansion of Selenomonas in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000532</classIRI>
<classLabel>expansion of Centipeda in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Centipeda in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
<newAxiom>'expansion of Centipeda in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Centipeda firmicutes'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000533</classIRI>
<classLabel>expansion of Lachnospiraceae in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Lachnospiraceae in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
<newAxiom>'expansion of Lachnospiraceae in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Lachnospiraceae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000534</classIRI>
<classLabel>expansion of Catonella in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Catonella in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
<newAxiom>'expansion of Catonella in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Catonella'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000535</classIRI>
<classLabel>expansion of Oribacterium in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Oribacterium in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
<newAxiom>'expansion of Oribacterium in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Oribacterium'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000536</classIRI>
<classLabel>expansion of Butyrivibrio in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Butyrivibrio in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
<newAxiom>'expansion of Butyrivibrio in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Butyrivibrio'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000537</classIRI>
<classLabel>expansion of Eubacteriaceae in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Eubacteriaceae in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Eubacteriaceae'</newAxiom>
<newAxiom>'expansion of Eubacteriaceae in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000538</classIRI>
<classLabel>expansion of Eubacterium in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Eubacterium in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
<newAxiom>'expansion of Eubacterium in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Eubacterium'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000539</classIRI>
<classLabel>expansion of Anaerosporobacter in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Anaerosporobacter in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Anaerosporobacter'</newAxiom>
<newAxiom>'expansion of Anaerosporobacter in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_482</classIRI>
<classLabel>Neisseria</classLabel>
<newAxiom>'Neisseria' SubClassOf 'Neisseriaceae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_480</classIRI>
<classLabel>Moraxella catarrhalis</classLabel>
<newAxiom>'Moraxella catarrhalis' SubClassOf 'Moraxella'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_2719313</classIRI>
<classLabel>Enterocloster</classLabel>
<newAxiom>'Enterocloster' SubClassOf 'Lachnospiraceae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000500</classIRI>
<classLabel>expansion of Proteobacteria in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Proteobacteria in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
<newAxiom>'expansion of Proteobacteria in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Pseudomonadota'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000501</classIRI>
<classLabel>expansion of Haemophilus in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Haemophilus in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
<newAxiom>'expansion of Haemophilus in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Haemophilus'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000502</classIRI>
<classLabel>expansion of Haemophilus influenzae in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Haemophilus influenzae in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
<newAxiom>'expansion of Haemophilus influenzae in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Haemophilus influenzae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000503</classIRI>
<classLabel>expansion of Haemophilus parainfluenzae in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Haemophilus parainfluenzae in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
<newAxiom>'expansion of Haemophilus parainfluenzae in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Haemophilus parainfluenzae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000504</classIRI>
<classLabel>expansion of Staphylococcus aureus in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Staphylococcus aureus in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
<newAxiom>'expansion of Staphylococcus aureus in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Staphylococcus aureus'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000505</classIRI>
<classLabel>expansion of Streptococcus pneumoniae in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Streptococcus pneumoniae in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
<newAxiom>'expansion of Streptococcus pneumoniae in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Streptococcus pneumoniae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000506</classIRI>
<classLabel>expansion of Pseudomonas aeruginosa in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Pseudomonas aeruginosa in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
<newAxiom>'expansion of Pseudomonas aeruginosa in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Pseudomonas aeruginosa'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000507</classIRI>
<classLabel>expansion of Neisseriaceae in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Neisseriaceae in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Neisseria flavescens'</newAxiom>
<newAxiom>'expansion of Neisseriaceae in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000508</classIRI>
<classLabel>expansion of Coribacteriales in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Coribacteriales in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Coriobacteriales'</newAxiom>
<newAxiom>'expansion of Coribacteriales in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000509</classIRI>
<classLabel>expansion of Coriobacteriaceae in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Coriobacteriaceae in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
<newAxiom>'expansion of Coriobacteriaceae in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Coriobacteriaceae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_1280</classIRI>
<classLabel>Staphylococcus aureus</classLabel>
<newAxiom>'Staphylococcus aureus' SubClassOf 'Staphylococcus'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_1279</classIRI>
<classLabel>Staphylococcus</classLabel>
<newAxiom>'Staphylococcus' SubClassOf 'Bacillales'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000510</classIRI>
<classLabel>expansion of Atopobium in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Atopobium in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Atopobium'</newAxiom>
<newAxiom>'expansion of Atopobium in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000511</classIRI>
<classLabel>expansion of Cryptobacterium in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Cryptobacterium in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Cryptobacterium'</newAxiom>
<newAxiom>'expansion of Cryptobacterium in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000512</classIRI>
<classLabel>expansion of Olsenella in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Olsenella in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Olsenella'</newAxiom>
<newAxiom>'expansion of Olsenella in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000513</classIRI>
<classLabel>expansion of Nocardioides in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Nocardioides in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Nocardioides'</newAxiom>
<newAxiom>'expansion of Nocardioides in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_2732514</classIRI>
<classLabel>Revtraviricetes</classLabel>
<newAxiom>'Revtraviricetes' SubClassOf 'Riboviria'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000514</classIRI>
<classLabel>expansion of Micrococcaceae in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Micrococcaceae in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Micrococcaceae'</newAxiom>
<newAxiom>'expansion of Micrococcaceae in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000515</classIRI>
<classLabel>expansion of Rothia in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Rothia in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Rothia high G+C Gram-positive bacteria'</newAxiom>
<newAxiom>'expansion of Rothia in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000516</classIRI>
<classLabel>expansion of Actinomycetaceae in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Actinomycetaceae in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Actinomycetaceae'</newAxiom>
<newAxiom>'expansion of Actinomycetaceae in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000517</classIRI>
<classLabel>expansion of Actinomyces in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Actinomyces in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
<newAxiom>'expansion of Actinomyces in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Actinomyces'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000518</classIRI>
<classLabel>expansion of Bifidobacterium in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Bifidobacterium in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
<newAxiom>'expansion of Bifidobacterium in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Bifidobacterium'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000519</classIRI>
<classLabel>expansion of Lactobacillales in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Lactobacillales in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Lactobacillales'</newAxiom>
<newAxiom>'expansion of Lactobacillales in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_2810280</classIRI>
<classLabel>Coprobacillaceae</classLabel>
<newAxiom>'Coprobacillaceae' SubClassOf 'Erysipelotrichales'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000560</classIRI>
<classLabel>expansion of Tannerella in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Tannerella in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Tannerella'</newAxiom>
<newAxiom>'expansion of Tannerella in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_95818</classIRI>
<classLabel>Candidatus Saccharimonadota</classLabel>
<newAxiom>'Candidatus Saccharimonadota' SubClassOf 'Bacteria'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000561</classIRI>
<classLabel>expansion of Prevotella in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Prevotella in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Prevotella'</newAxiom>
<newAxiom>'expansion of Prevotella in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000562</classIRI>
<classLabel>expansion of Hallella in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Hallella in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Hallella'</newAxiom>
<newAxiom>'expansion of Hallella in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000563</classIRI>
<classLabel>expansion of Capnocytophaga in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Capnocytophaga in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Capnocytophaga'</newAxiom>
<newAxiom>'expansion of Capnocytophaga in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000564</classIRI>
<classLabel>expansion of Haemophilus hemolyticus in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Haemophilus hemolyticus in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Haemophilus haemolyticus'</newAxiom>
<newAxiom>'expansion of Haemophilus hemolyticus in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000565</classIRI>
<classLabel>expansion of Firmicutes in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Firmicutes in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Bacillota'</newAxiom>
<newAxiom>'expansion of Firmicutes in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000566</classIRI>
<classLabel>expansion of Lactobacillus in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Lactobacillus in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
<newAxiom>'expansion of Lactobacillus in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Lactobacillus'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000567</classIRI>
<classLabel>expansion of Burkholderia in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Burkholderia in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
<newAxiom>'expansion of Burkholderia in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Burkholderia'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000568</classIRI>
<classLabel>expansion of Pseudomonas in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Pseudomonas in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Pseudomonas'</newAxiom>
<newAxiom>'expansion of Pseudomonas in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000569</classIRI>
<classLabel>depletion of Bacteroidetes in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'depletion of Bacteroidetes in lung of COPD patient compared to healthy human' SubClassOf 'has microbe depleted in diseased host' some 'Bacteroidota'</newAxiom>
<newAxiom>'depletion of Bacteroidetes in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000570</classIRI>
<classLabel>depletion of Prevotella in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'depletion of Prevotella in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
<newAxiom>'depletion of Prevotella in lung of COPD patient compared to healthy human' SubClassOf 'has microbe depleted in diseased host' some 'Prevotella'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000571</classIRI>
<classLabel>depletion of Arthrobacter in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'depletion of Arthrobacter in lung of COPD patient compared to healthy human' SubClassOf 'has microbe depleted in diseased host' some 'Arthrobacter'</newAxiom>
<newAxiom>'depletion of Arthrobacter in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000572</classIRI>
<classLabel>depletion of Geodermatophilaceae in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'depletion of Geodermatophilaceae in lung of COPD patient compared to healthy human' SubClassOf 'has microbe depleted in diseased host' some 'Geodermatophilaceae'</newAxiom>
<newAxiom>'depletion of Geodermatophilaceae in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000573</classIRI>
<classLabel>depletion of Nakamurellaceae in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'depletion of Nakamurellaceae in lung of COPD patient compared to healthy human' SubClassOf 'has microbe depleted in diseased host' some 'Nakamurellaceae'</newAxiom>
<newAxiom>'depletion of Nakamurellaceae in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000574</classIRI>
<classLabel>depletion of Modestobacter in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'depletion of Modestobacter in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
<newAxiom>'depletion of Modestobacter in lung of COPD patient compared to healthy human' SubClassOf 'has microbe depleted in diseased host' some 'Modestobacter'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000575</classIRI>
<classLabel>depletion of Humicoccus in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'depletion of Humicoccus in lung of COPD patient compared to healthy human' SubClassOf 'has microbe depleted in diseased host' some 'Nakamurella'</newAxiom>
<newAxiom>'depletion of Humicoccus in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000576</classIRI>
<classLabel>depletion of Thermoactinomycetaceae in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'depletion of Thermoactinomycetaceae in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
<newAxiom>'depletion of Thermoactinomycetaceae in lung of COPD patient compared to healthy human' SubClassOf 'has microbe depleted in diseased host' some 'Thermoactinomycetaceae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000577</classIRI>
<classLabel>depletion of Thermoactinomyces in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'depletion of Thermoactinomyces in lung of COPD patient compared to healthy human' SubClassOf 'has microbe depleted in diseased host' some 'Thermoactinomyces'</newAxiom>
<newAxiom>'depletion of Thermoactinomyces in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000578</classIRI>
<classLabel>depletion of Clostridium  in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'depletion of Clostridium  in lung of COPD patient compared to healthy human' SubClassOf 'has microbe depleted in diseased host' some 'Clostridium'</newAxiom>
<newAxiom>'depletion of Clostridium  in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000579</classIRI>
<classLabel>depletion of Citrobacter in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'depletion of Citrobacter in lung of COPD patient compared to healthy human' SubClassOf 'has microbe depleted in diseased host' some 'Citrobacter'</newAxiom>
<newAxiom>'depletion of Citrobacter in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000540</classIRI>
<classLabel>expansion of Peptostreptococcus in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Peptostreptococcus in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Peptostreptococcus'</newAxiom>
<newAxiom>'expansion of Peptostreptococcus in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000541</classIRI>
<classLabel>expansion of Parvimonas in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Parvimonas in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
<newAxiom>'expansion of Parvimonas in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Parvimonas'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000542</classIRI>
<classLabel>expansion of Leptotrichiaceae in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Leptotrichiaceae in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
<newAxiom>'expansion of Leptotrichiaceae in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Leptotrichiaceae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000543</classIRI>
<classLabel>expansion of Leptotrichia in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Leptotrichia in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Leptotrichia'</newAxiom>
<newAxiom>'expansion of Leptotrichia in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000544</classIRI>
<classLabel>expansion of Fusobacteriaceae in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Fusobacteriaceae in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
<newAxiom>'expansion of Fusobacteriaceae in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Fusobacteriaceae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000545</classIRI>
<classLabel>expansion of Fusobacterium in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Fusobacterium in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
<newAxiom>'expansion of Fusobacterium in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Fusobacterium'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000546</classIRI>
<classLabel>expansion of Balneimonas (Microvirga） in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Balneimonas (Microvirga） in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Microvirga'</newAxiom>
<newAxiom>'expansion of Balneimonas (Microvirga） in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_642</classIRI>
<classLabel>Aeromonas</classLabel>
<newAxiom>'Aeromonas' SubClassOf 'Aeromonadaceae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000547</classIRI>
<classLabel>expansion of Kingella in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Kingella in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Kingella b-proteobacteria'</newAxiom>
<newAxiom>'expansion of Kingella in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000548</classIRI>
<classLabel>expansion of Aeromonadales in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Aeromonadales in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Aeromonadales'</newAxiom>
<newAxiom>'expansion of Aeromonadales in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000549</classIRI>
<classLabel>expansion of Aeromonadaceae in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Aeromonadaceae in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
<newAxiom>'expansion of Aeromonadaceae in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Aeromonadaceae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000550</classIRI>
<classLabel>expansion of Aeromonas in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Aeromonas in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
<newAxiom>'expansion of Aeromonas in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Aeromonas'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000551</classIRI>
<classLabel>expansion of Serratia in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Serratia in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
<newAxiom>'expansion of Serratia in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Serratia enterobacteria'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_893</classIRI>
<classLabel>Desulfobulbus</classLabel>
<newAxiom>'Desulfobulbus' SubClassOf 'Desulfobulbaceae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000552</classIRI>
<classLabel>expansion of Desulfobacterales in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Desulfobacterales in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Desulfobacterales'</newAxiom>
<newAxiom>'expansion of Desulfobacterales in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000553</classIRI>
<classLabel>expansion of Desulfobulbaceae in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Desulfobulbaceae in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
<newAxiom>'expansion of Desulfobulbaceae in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Desulfobulbaceae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_909656</classIRI>
<classLabel>Phocaeicola</classLabel>
<newAxiom>'Phocaeicola' SubClassOf 'Bacteroidaceae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000554</classIRI>
<classLabel>expansion of Desulfobulbus in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Desulfobulbus in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
<newAxiom>'expansion of Desulfobulbus in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Desulfobulbus'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000555</classIRI>
<classLabel>expansion of e-proteobacteria in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of e-proteobacteria in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
<newAxiom>'expansion of e-proteobacteria in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Campylobacterota'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000556</classIRI>
<classLabel>expansion of Campylobacteriales in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Campylobacteriales in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Campylobacterales'</newAxiom>
<newAxiom>'expansion of Campylobacteriales in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000557</classIRI>
<classLabel>expansion of Campylobacteriaceae in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Campylobacteriaceae in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
<newAxiom>'expansion of Campylobacteriaceae in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Campylobacteraceae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000558</classIRI>
<classLabel>expansion of Campylobacter in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Campylobacter in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Campylobacter'</newAxiom>
<newAxiom>'expansion of Campylobacter in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000559</classIRI>
<classLabel>expansion of Dysgonomonas in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Dysgonomonas in lung of COPD patient compared to healthy human' SubClassOf 'bacterial change in lung of COPD patient compared to healthy human'</newAxiom>
<newAxiom>'expansion of Dysgonomonas in lung of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Dysgonomonas'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_766764</classIRI>
<classLabel>Debaryomycetaceae</classLabel>
<newAxiom>'Debaryomycetaceae' SubClassOf 'Saccharomycotina'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000488</classIRI>
<classLabel>human-stomach microbiome interaction</classLabel>
<newAxiom>'human-stomach microbiome interaction' SubClassOf 'human-gut microbiome interaction'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000489</classIRI>
<classLabel>COPD human respiratory airway microbiome interaction</classLabel>
<newAxiom>'COPD human respiratory airway microbiome interaction' SubClassOf 'human respiratory airway microbiome interaction'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000491</classIRI>
<classLabel>COPD human gut microbiome interaction</classLabel>
<newAxiom>'COPD human gut microbiome interaction' SubClassOf 'human-gut microbiome interaction'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000492</classIRI>
<classLabel>bacterial change in lung of COPD patient compared to healthy human</classLabel>
<newAxiom>'bacterial change in lung of COPD patient compared to healthy human' SubClassOf 'COPD human respiratory airway microbiome interaction'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000493</classIRI>
<classLabel>bacterial change in lung of severe COPD patient compared to mild-moderate COPD</classLabel>
<newAxiom>'bacterial change in lung of severe COPD patient compared to mild-moderate COPD' SubClassOf 'COPD human respiratory airway microbiome interaction'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000494</classIRI>
<classLabel>COPD human oral microbiome interaction</classLabel>
<newAxiom>'COPD human oral microbiome interaction' SubClassOf 'human oral cavity microbiome interaction'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000495</classIRI>
<classLabel>bacterial change in sputum of COPD patient compared to healthy human</classLabel>
<newAxiom>'bacterial change in sputum of COPD patient compared to healthy human' SubClassOf 'COPD human oral microbiome interaction'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000496</classIRI>
<classLabel>bacterial change in gut of COPD patient compared to healthy human</classLabel>
<newAxiom>'bacterial change in gut of COPD patient compared to healthy human' SubClassOf 'COPD human gut microbiome interaction'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000497</classIRI>
<classLabel>bacterial change in sputum of exacerbation COPD patient compared to stable COPD</classLabel>
<newAxiom>'bacterial change in sputum of exacerbation COPD patient compared to stable COPD' SubClassOf 'COPD human oral microbiome interaction'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000499</classIRI>
<classLabel>bacterial change in lung of exacerbation COPD patient compared to stable COPD</classLabel>
<newAxiom>'bacterial change in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'COPD human respiratory airway microbiome interaction'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_726</classIRI>
<classLabel>Haemophilus haemolyticus</classLabel>
<newAxiom>'Haemophilus haemolyticus' SubClassOf 'Haemophilus'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_727</classIRI>
<classLabel>Haemophilus influenzae</classLabel>
<newAxiom>'Haemophilus influenzae' SubClassOf 'Haemophilus'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_43996</classIRI>
<classLabel>Catonella</classLabel>
<newAxiom>'Catonella' SubClassOf 'Lachnospiraceae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_52228</classIRI>
<classLabel>Hallella</classLabel>
<newAxiom>'Hallella' SubClassOf 'Prevotellaceae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_735</classIRI>
<classLabel>Haemophilus parahaemolyticus</classLabel>
<newAxiom>'Haemophilus parahaemolyticus' SubClassOf 'Haemophilus'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_943</classIRI>
<classLabel>Ehrlichia</classLabel>
<newAxiom>'Ehrlichia' SubClassOf 'Alphaproteobacteria'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_713</classIRI>
<classLabel>Actinobacillus</classLabel>
<newAxiom>'Actinobacillus' SubClassOf 'Pasteurellaceae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_195950</classIRI>
<classLabel>Tannerella</classLabel>
<newAxiom>'Tannerella' SubClassOf 'Tannerellaceae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_265975</classIRI>
<classLabel>Oribacterium</classLabel>
<newAxiom>'Oribacterium' SubClassOf 'Lachnospiraceae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_906</classIRI>
<classLabel>Megasphaera</classLabel>
<newAxiom>'Megasphaera' SubClassOf 'Veillonellaceae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_2767887</classIRI>
<classLabel>Ligilactobacillus</classLabel>
<newAxiom>'Ligilactobacillus' SubClassOf 'Lactobacillaceae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_3379134</classIRI>
<classLabel>Pseudomonadati</classLabel>
<newAxiom>'Pseudomonadati' SubClassOf 'Bacteria'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_2559587</classIRI>
<classLabel>Riboviria</classLabel>
<newAxiom>'Riboviria' SubClassOf 'Viruses'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_216572</classIRI>
<classLabel>Oscillospiraceae</classLabel>
<newAxiom>'Oscillospiraceae' SubClassOf 'Eubacteriales'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_165696</classIRI>
<classLabel>Novosphingobium</classLabel>
<newAxiom>'Novosphingobium' SubClassOf 'Sphingomonadaceae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_1839</classIRI>
<classLabel>Nocardioides</classLabel>
<newAxiom>'Nocardioides' SubClassOf 'Propionibacteriales'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_156973</classIRI>
<classLabel>Dysgonomonas</classLabel>
<newAxiom>'Dysgonomonas' SubClassOf 'Bacteroidales'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_1663</classIRI>
<classLabel>Arthrobacter</classLabel>
<newAxiom>'Arthrobacter' SubClassOf 'Micrococcaceae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_135624</classIRI>
<classLabel>Aeromonadales</classLabel>
<newAxiom>'Aeromonadales' SubClassOf 'Gammaproteobacteria'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_203691</classIRI>
<classLabel>Spirochaetota</classLabel>
<newAxiom>'Spirochaetota' SubClassOf 'Pseudomonadati'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_133925</classIRI>
<classLabel>Olsenella</classLabel>
<newAxiom>'Olsenella' SubClassOf 'Atopobiaceae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_200940</classIRI>
<classLabel>Thermodesulfobacteriota</classLabel>
<newAxiom>'Thermodesulfobacteriota' SubClassOf 'Pseudomonadati'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_289201</classIRI>
<classLabel>Pontibacillus</classLabel>
<newAxiom>'Pontibacillus' SubClassOf 'Bacillaceae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_186650</classIRI>
<classLabel>Microvirga</classLabel>
<newAxiom>'Microvirga' SubClassOf 'Methylobacteriaceae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_84642</classIRI>
<classLabel>Aeromonadaceae</classLabel>
<newAxiom>'Aeromonadaceae' SubClassOf 'Aeromonadales'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000600</classIRI>
<classLabel>depletion of Cardiobacteria in lung of exacerbation COPD patient compared to stable COPD</classLabel>
<newAxiom>'depletion of Cardiobacteria in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'bacterial change in lung of exacerbation COPD patient compared to stable COPD'</newAxiom>
<newAxiom>'depletion of Cardiobacteria in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'has microbe depleted in diseased host' some 'Candidatus Saccharimonadota'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_46123</classIRI>
<classLabel>Abiotrophia</classLabel>
<newAxiom>'Abiotrophia' SubClassOf 'Aerococcaceae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000601</classIRI>
<classLabel>depletion of Dialister in lung of exacerbation COPD patient compared to stable COPD</classLabel>
<newAxiom>'depletion of Dialister in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'bacterial change in lung of exacerbation COPD patient compared to stable COPD'</newAxiom>
<newAxiom>'depletion of Dialister in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'has microbe depleted in diseased host' some 'Dialister'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000602</classIRI>
<classLabel>depletion of Slackia in lung of exacerbation COPD patient compared to stable COPD</classLabel>
<newAxiom>'depletion of Slackia in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'bacterial change in lung of exacerbation COPD patient compared to stable COPD'</newAxiom>
<newAxiom>'depletion of Slackia in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'has microbe depleted in diseased host' some 'Cardiobacterium'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000603</classIRI>
<classLabel>depletion of Mogibacterium in lung of exacerbation COPD patient compared to stable COPD</classLabel>
<newAxiom>'depletion of Mogibacterium in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'bacterial change in lung of exacerbation COPD patient compared to stable COPD'</newAxiom>
<newAxiom>'depletion of Mogibacterium in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'has microbe depleted in diseased host' some 'Mogibacterium'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000604</classIRI>
<classLabel>depletion of Treponema in lung of exacerbation COPD patient compared to stable COPD</classLabel>
<newAxiom>'depletion of Treponema in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'bacterial change in lung of exacerbation COPD patient compared to stable COPD'</newAxiom>
<newAxiom>'depletion of Treponema in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'has microbe depleted in diseased host' some 'Slackia'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000605</classIRI>
<classLabel>depletion of Aggregatibacter in lung of exacerbation COPD patient compared to stable COPD</classLabel>
<newAxiom>'depletion of Aggregatibacter in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'bacterial change in lung of exacerbation COPD patient compared to stable COPD'</newAxiom>
<newAxiom>'depletion of Aggregatibacter in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'has microbe depleted in diseased host' some 'Aggregatibacter'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000606</classIRI>
<classLabel>depletion of Bulleidia in lung of exacerbation COPD patient compared to stable COPD</classLabel>
<newAxiom>'depletion of Bulleidia in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'bacterial change in lung of exacerbation COPD patient compared to stable COPD'</newAxiom>
<newAxiom>'depletion of Bulleidia in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'has microbe depleted in diseased host' some 'Bulleidia'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000607</classIRI>
<classLabel>depletion of Megasphaera in lung of exacerbation COPD patient compared to stable COPD</classLabel>
<newAxiom>'depletion of Megasphaera in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'has microbe depleted in diseased host' some 'Megasphaera'</newAxiom>
<newAxiom>'depletion of Megasphaera in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'bacterial change in lung of exacerbation COPD patient compared to stable COPD'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000608</classIRI>
<classLabel>depletion of Prevotella in lung of exacerbation COPD patient compared to stable COPD</classLabel>
<newAxiom>'depletion of Prevotella in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'has microbe depleted in diseased host' some 'Prevotella'</newAxiom>
<newAxiom>'depletion of Prevotella in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'bacterial change in lung of exacerbation COPD patient compared to stable COPD'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000609</classIRI>
<classLabel>depletion of Veillonella in lung of exacerbation COPD patient compared to stable COPD</classLabel>
<newAxiom>'depletion of Veillonella in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'has microbe depleted in diseased host' some 'Veillonella'</newAxiom>
<newAxiom>'depletion of Veillonella in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'bacterial change in lung of exacerbation COPD patient compared to stable COPD'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000610</classIRI>
<classLabel>depletion of Firmicutes in lung of exacerbation COPD patient compared to stable COPD</classLabel>
<newAxiom>'depletion of Firmicutes in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'bacterial change in lung of exacerbation COPD patient compared to stable COPD'</newAxiom>
<newAxiom>'depletion of Firmicutes in lung of exacerbation COPD patient compared to stable COPD' SubClassOf 'has microbe depleted in diseased host' some 'Bacillota'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000611</classIRI>
<classLabel>expansion of Prevotella in lung of severe COPD patient compared to mild-moderate COPD</classLabel>
<newAxiom>'expansion of Prevotella in lung of severe COPD patient compared to mild-moderate COPD' SubClassOf 'bacterial change in lung of severe COPD patient compared to mild-moderate COPD'</newAxiom>
<newAxiom>'expansion of Prevotella in lung of severe COPD patient compared to mild-moderate COPD' SubClassOf 'has microbe expanded in diseased host' some 'Prevotella'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000612</classIRI>
<classLabel>expansion of Acinetobacter in lung of severe COPD patient compared to mild-moderate COPD</classLabel>
<newAxiom>'expansion of Acinetobacter in lung of severe COPD patient compared to mild-moderate COPD' SubClassOf 'has microbe expanded in diseased host' some 'Acinetobacter'</newAxiom>
<newAxiom>'expansion of Acinetobacter in lung of severe COPD patient compared to mild-moderate COPD' SubClassOf 'bacterial change in lung of severe COPD patient compared to mild-moderate COPD'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000613</classIRI>
<classLabel>expansion of Haemophilus in lung of severe COPD patient compared to mild-moderate COPD</classLabel>
<newAxiom>'expansion of Haemophilus in lung of severe COPD patient compared to mild-moderate COPD' SubClassOf 'bacterial change in lung of severe COPD patient compared to mild-moderate COPD'</newAxiom>
<newAxiom>'expansion of Haemophilus in lung of severe COPD patient compared to mild-moderate COPD' SubClassOf 'has microbe expanded in diseased host' some 'Haemophilus'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000614</classIRI>
<classLabel>expansion of Proteobacteria in lung of severe COPD patient compared to mild-moderate COPD</classLabel>
<newAxiom>'expansion of Proteobacteria in lung of severe COPD patient compared to mild-moderate COPD' SubClassOf 'has microbe expanded in diseased host' some 'Pseudomonadota'</newAxiom>
<newAxiom>'expansion of Proteobacteria in lung of severe COPD patient compared to mild-moderate COPD' SubClassOf 'bacterial change in lung of severe COPD patient compared to mild-moderate COPD'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000615</classIRI>
<classLabel>expansion of Nocardioides in lung of severe COPD patient compared to mild-moderate COPD</classLabel>
<newAxiom>'expansion of Nocardioides in lung of severe COPD patient compared to mild-moderate COPD' SubClassOf 'bacterial change in lung of severe COPD patient compared to mild-moderate COPD'</newAxiom>
<newAxiom>'expansion of Nocardioides in lung of severe COPD patient compared to mild-moderate COPD' SubClassOf 'has microbe expanded in diseased host' some 'Nocardioides'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000616</classIRI>
<classLabel>expansion of Pontibacillus in lung of severe COPD patient compared to mild-moderate COPD</classLabel>
<newAxiom>'expansion of Pontibacillus in lung of severe COPD patient compared to mild-moderate COPD' SubClassOf 'bacterial change in lung of severe COPD patient compared to mild-moderate COPD'</newAxiom>
<newAxiom>'expansion of Pontibacillus in lung of severe COPD patient compared to mild-moderate COPD' SubClassOf 'has microbe expanded in diseased host' some 'Pontibacillus'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000617</classIRI>
<classLabel>expansion of Clostridium  in lung of severe COPD patient compared to mild-moderate COPD</classLabel>
<newAxiom>'expansion of Clostridium  in lung of severe COPD patient compared to mild-moderate COPD' SubClassOf 'bacterial change in lung of severe COPD patient compared to mild-moderate COPD'</newAxiom>
<newAxiom>'expansion of Clostridium  in lung of severe COPD patient compared to mild-moderate COPD' SubClassOf 'has microbe expanded in diseased host' some 'Clostridium'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000618</classIRI>
<classLabel>expansion of Balneimonas  in lung of severe COPD patient compared to mild-moderate COPD</classLabel>
<newAxiom>'expansion of Balneimonas  in lung of severe COPD patient compared to mild-moderate COPD' SubClassOf 'has microbe expanded in diseased host' some 'Microvirga'</newAxiom>
<newAxiom>'expansion of Balneimonas  in lung of severe COPD patient compared to mild-moderate COPD' SubClassOf 'bacterial change in lung of severe COPD patient compared to mild-moderate COPD'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000619</classIRI>
<classLabel>expansion of Aeromonas in lung of severe COPD patient compared to mild-moderate COPD</classLabel>
<newAxiom>'expansion of Aeromonas in lung of severe COPD patient compared to mild-moderate COPD' SubClassOf 'has microbe expanded in diseased host' some 'Aeromonas'</newAxiom>
<newAxiom>'expansion of Aeromonas in lung of severe COPD patient compared to mild-moderate COPD' SubClassOf 'bacterial change in lung of severe COPD patient compared to mild-moderate COPD'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_1643824</classIRI>
<classLabel>Atopobiaceae</classLabel>
<newAxiom>'Atopobiaceae' SubClassOf 'Coriobacteriales'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_464821</classIRI>
<classLabel>coliform bacterium 3-80</classLabel>
<newAxiom>'coliform bacterium 3-80' SubClassOf 'Bacteria'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_165779</classIRI>
<classLabel>Anaerococcus</classLabel>
<newAxiom>'Anaerococcus' SubClassOf 'Peptoniphilaceae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_82202</classIRI>
<classLabel>Centipeda firmicutes</classLabel>
<newAxiom>'Centipeda firmicutes' SubClassOf 'Selenomonadaceae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_909930</classIRI>
<classLabel>Acidaminococcaceae</classLabel>
<newAxiom>'Acidaminococcaceae' SubClassOf 'Negativicutes'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_136</classIRI>
<classLabel>Spirochaetales</classLabel>
<newAxiom>'Spirochaetales' SubClassOf 'Spirochaetota'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000640</classIRI>
<classLabel>expansion of Moraxella in gut of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Moraxella in gut of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Moraxella'</newAxiom>
<newAxiom>'expansion of Moraxella in gut of COPD patient compared to healthy human' SubClassOf 'bacterial change in gut of COPD patient compared to healthy human'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000641</classIRI>
<classLabel>expansion of Pseudomonas in gut of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Pseudomonas in gut of COPD patient compared to healthy human' SubClassOf 'bacterial change in gut of COPD patient compared to healthy human'</newAxiom>
<newAxiom>'expansion of Pseudomonas in gut of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Pseudomonas'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000642</classIRI>
<classLabel>expansion of Enterobacteriaceae in gut of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Enterobacteriaceae in gut of COPD patient compared to healthy human' SubClassOf 'bacterial change in gut of COPD patient compared to healthy human'</newAxiom>
<newAxiom>'expansion of Enterobacteriaceae in gut of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Enterobacteriaceae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000643</classIRI>
<classLabel>expansion of Streptococcus in gut of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Streptococcus in gut of COPD patient compared to healthy human' SubClassOf 'bacterial change in gut of COPD patient compared to healthy human'</newAxiom>
<newAxiom>'expansion of Streptococcus in gut of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Streptococcus'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000644</classIRI>
<classLabel>expansion of Desulfovibrionaceae in gut of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Desulfovibrionaceae in gut of COPD patient compared to healthy human' SubClassOf 'bacterial change in gut of COPD patient compared to healthy human'</newAxiom>
<newAxiom>'expansion of Desulfovibrionaceae in gut of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Desulfovibrionaceae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000645</classIRI>
<classLabel>expansion of Fusobacteriaceae in gut of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Fusobacteriaceae in gut of COPD patient compared to healthy human' SubClassOf 'bacterial change in gut of COPD patient compared to healthy human'</newAxiom>
<newAxiom>'expansion of Fusobacteriaceae in gut of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Fusobacteriaceae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000646</classIRI>
<classLabel>expansion of Prevotellaceae in gut of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Prevotellaceae in gut of COPD patient compared to healthy human' SubClassOf 'bacterial change in gut of COPD patient compared to healthy human'</newAxiom>
<newAxiom>'expansion of Prevotellaceae in gut of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Prevotellaceae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000647</classIRI>
<classLabel>expansion of Bacteroidaceae in gut of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Bacteroidaceae in gut of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Bacteroidaceae'</newAxiom>
<newAxiom>'expansion of Bacteroidaceae in gut of COPD patient compared to healthy human' SubClassOf 'bacterial change in gut of COPD patient compared to healthy human'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000648</classIRI>
<classLabel>expansion of Rothia in gut of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Rothia in gut of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Rothia high G+C Gram-positive bacteria'</newAxiom>
<newAxiom>'expansion of Rothia in gut of COPD patient compared to healthy human' SubClassOf 'bacterial change in gut of COPD patient compared to healthy human'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000649</classIRI>
<classLabel>expansion of Klebsiella in gut of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Klebsiella in gut of COPD patient compared to healthy human' SubClassOf 'bacterial change in gut of COPD patient compared to healthy human'</newAxiom>
<newAxiom>'expansion of Klebsiella in gut of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Klebsiella pneumoniae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_653683</classIRI>
<classLabel>Anaerosporobacter</classLabel>
<newAxiom>'Anaerosporobacter' SubClassOf 'Lachnospiraceae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_88138</classIRI>
<classLabel>Modestobacter</classLabel>
<newAxiom>'Modestobacter' SubClassOf 'Geodermatophilaceae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_2023</classIRI>
<classLabel>Thermoactinomyces</classLabel>
<newAxiom>'Thermoactinomyces' SubClassOf 'Thermoactinomycetaceae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000650</classIRI>
<classLabel>depletion of Bacteroidetes in gut of COPD patient compared to healthy human</classLabel>
<newAxiom>'depletion of Bacteroidetes in gut of COPD patient compared to healthy human' SubClassOf 'bacterial change in gut of COPD patient compared to healthy human'</newAxiom>
<newAxiom>'depletion of Bacteroidetes in gut of COPD patient compared to healthy human' SubClassOf 'has microbe depleted in diseased host' some 'Bacteroidota'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000651</classIRI>
<classLabel>depletion of Firmicutes in gut of COPD patient compared to healthy human</classLabel>
<newAxiom>'depletion of Firmicutes in gut of COPD patient compared to healthy human' SubClassOf 'bacterial change in gut of COPD patient compared to healthy human'</newAxiom>
<newAxiom>'depletion of Firmicutes in gut of COPD patient compared to healthy human' SubClassOf 'has microbe depleted in diseased host' some 'Bacillota'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000652</classIRI>
<classLabel>depletion of Prevotella in gut of COPD patient compared to healthy human</classLabel>
<newAxiom>'depletion of Prevotella in gut of COPD patient compared to healthy human' SubClassOf 'bacterial change in gut of COPD patient compared to healthy human'</newAxiom>
<newAxiom>'depletion of Prevotella in gut of COPD patient compared to healthy human' SubClassOf 'has microbe depleted in diseased host' some 'Prevotella'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000653</classIRI>
<classLabel>depletion of Veillonella in gut of COPD patient compared to healthy human</classLabel>
<newAxiom>'depletion of Veillonella in gut of COPD patient compared to healthy human' SubClassOf 'has microbe depleted in diseased host' some 'Veillonella'</newAxiom>
<newAxiom>'depletion of Veillonella in gut of COPD patient compared to healthy human' SubClassOf 'bacterial change in gut of COPD patient compared to healthy human'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000654</classIRI>
<classLabel>depletion of Bifidobacterium in gut of COPD patient compared to healthy human</classLabel>
<newAxiom>'depletion of Bifidobacterium in gut of COPD patient compared to healthy human' SubClassOf 'bacterial change in gut of COPD patient compared to healthy human'</newAxiom>
<newAxiom>'depletion of Bifidobacterium in gut of COPD patient compared to healthy human' SubClassOf 'has microbe depleted in diseased host' some 'Bifidobacterium'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000655</classIRI>
<classLabel>depletion of Faecalibacterium in gut of COPD patient compared to healthy human</classLabel>
<newAxiom>'depletion of Faecalibacterium in gut of COPD patient compared to healthy human' SubClassOf 'bacterial change in gut of COPD patient compared to healthy human'</newAxiom>
<newAxiom>'depletion of Faecalibacterium in gut of COPD patient compared to healthy human' SubClassOf 'has microbe depleted in diseased host' some 'Faecalibacterium'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000656</classIRI>
<classLabel>depletion of Parabacteroides goldsteinii in gut of COPD patient compared to healthy human</classLabel>
<newAxiom>'depletion of Parabacteroides goldsteinii in gut of COPD patient compared to healthy human' SubClassOf 'has microbe depleted in diseased host' some 'Parabacteroides goldsteinii'</newAxiom>
<newAxiom>'depletion of Parabacteroides goldsteinii in gut of COPD patient compared to healthy human' SubClassOf 'bacterial change in gut of COPD patient compared to healthy human'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000657</classIRI>
<classLabel>depletion of Lachnospiraceae in gut of COPD patient compared to healthy human</classLabel>
<newAxiom>'depletion of Lachnospiraceae in gut of COPD patient compared to healthy human' SubClassOf 'bacterial change in gut of COPD patient compared to healthy human'</newAxiom>
<newAxiom>'depletion of Lachnospiraceae in gut of COPD patient compared to healthy human' SubClassOf 'has microbe depleted in diseased host' some 'Lachnospiraceae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000658</classIRI>
<classLabel>depletion of Clostridium in gut of COPD patient compared to healthy human</classLabel>
<newAxiom>'depletion of Clostridium in gut of COPD patient compared to healthy human' SubClassOf 'has microbe depleted in diseased host' some 'Clostridium'</newAxiom>
<newAxiom>'depletion of Clostridium in gut of COPD patient compared to healthy human' SubClassOf 'bacterial change in gut of COPD patient compared to healthy human'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000659</classIRI>
<classLabel>depletion of Propionibacterium in gut of COPD patient compared to healthy human</classLabel>
<newAxiom>'depletion of Propionibacterium in gut of COPD patient compared to healthy human' SubClassOf 'bacterial change in gut of COPD patient compared to healthy human'</newAxiom>
<newAxiom>'depletion of Propionibacterium in gut of COPD patient compared to healthy human' SubClassOf 'has microbe depleted in diseased host' some 'Propionibacterium'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_41297</classIRI>
<classLabel>Sphingomonadaceae</classLabel>
<newAxiom>'Sphingomonadaceae' SubClassOf 'Alphaproteobacteria'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000620</classIRI>
<classLabel>expansion of Desulfobulbaceae in lung of severe COPD patient compared to mild-moderate COPD</classLabel>
<newAxiom>'expansion of Desulfobulbaceae in lung of severe COPD patient compared to mild-moderate COPD' SubClassOf 'bacterial change in lung of severe COPD patient compared to mild-moderate COPD'</newAxiom>
<newAxiom>'expansion of Desulfobulbaceae in lung of severe COPD patient compared to mild-moderate COPD' SubClassOf 'has microbe expanded in diseased host' some 'Desulfobulbaceae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000621</classIRI>
<classLabel>expansion of Desulfobacterales in lung of severe COPD patient compared to mild-moderate COPD</classLabel>
<newAxiom>'expansion of Desulfobacterales in lung of severe COPD patient compared to mild-moderate COPD' SubClassOf 'bacterial change in lung of severe COPD patient compared to mild-moderate COPD'</newAxiom>
<newAxiom>'expansion of Desulfobacterales in lung of severe COPD patient compared to mild-moderate COPD' SubClassOf 'has microbe expanded in diseased host' some 'Desulfobacterales'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_80864</classIRI>
<classLabel>Comamonadaceae</classLabel>
<newAxiom>'Comamonadaceae' SubClassOf 'Burkholderiales'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000622</classIRI>
<classLabel>expansion of Aeromonadales in lung of severe COPD patient compared to mild-moderate COPD</classLabel>
<newAxiom>'expansion of Aeromonadales in lung of severe COPD patient compared to mild-moderate COPD' SubClassOf 'bacterial change in lung of severe COPD patient compared to mild-moderate COPD'</newAxiom>
<newAxiom>'expansion of Aeromonadales in lung of severe COPD patient compared to mild-moderate COPD' SubClassOf 'has microbe expanded in diseased host' some 'Aeromonadales'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000623</classIRI>
<classLabel>expansion of Aeromonadaceae in lung of severe COPD patient compared to mild-moderate COPD</classLabel>
<newAxiom>'expansion of Aeromonadaceae in lung of severe COPD patient compared to mild-moderate COPD' SubClassOf 'bacterial change in lung of severe COPD patient compared to mild-moderate COPD'</newAxiom>
<newAxiom>'expansion of Aeromonadaceae in lung of severe COPD patient compared to mild-moderate COPD' SubClassOf 'has microbe expanded in diseased host' some 'Aeromonadaceae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000624</classIRI>
<classLabel>depletion of Prevotella in lung of severe COPD patient compared to mild-moderate COPD</classLabel>
<newAxiom>'depletion of Prevotella in lung of severe COPD patient compared to mild-moderate COPD' SubClassOf 'has microbe depleted in diseased host' some 'Prevotella'</newAxiom>
<newAxiom>'depletion of Prevotella in lung of severe COPD patient compared to mild-moderate COPD' SubClassOf 'bacterial change in lung of severe COPD patient compared to mild-moderate COPD'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000625</classIRI>
<classLabel>depletion of Veillonella in lung of severe COPD patient compared to mild-moderate COPD</classLabel>
<newAxiom>'depletion of Veillonella in lung of severe COPD patient compared to mild-moderate COPD' SubClassOf 'has microbe depleted in diseased host' some 'Veillonella'</newAxiom>
<newAxiom>'depletion of Veillonella in lung of severe COPD patient compared to mild-moderate COPD' SubClassOf 'bacterial change in lung of severe COPD patient compared to mild-moderate COPD'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000626</classIRI>
<classLabel>depletion of Bacteroidetes in lung of severe COPD patient compared to mild-moderate COPD</classLabel>
<newAxiom>'depletion of Bacteroidetes in lung of severe COPD patient compared to mild-moderate COPD' SubClassOf 'has microbe depleted in diseased host' some 'Bacteroidota'</newAxiom>
<newAxiom>'depletion of Bacteroidetes in lung of severe COPD patient compared to mild-moderate COPD' SubClassOf 'bacterial change in lung of severe COPD patient compared to mild-moderate COPD'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000627</classIRI>
<classLabel>depletion of Moraxellaceae in lung of severe COPD patient compared to mild-moderate COPD</classLabel>
<newAxiom>'depletion of Moraxellaceae in lung of severe COPD patient compared to mild-moderate COPD' SubClassOf 'has microbe depleted in diseased host' some 'Moraxellaceae'</newAxiom>
<newAxiom>'depletion of Moraxellaceae in lung of severe COPD patient compared to mild-moderate COPD' SubClassOf 'bacterial change in lung of severe COPD patient compared to mild-moderate COPD'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000628</classIRI>
<classLabel>depletion of Oribacterium in lung of severe COPD patient compared to mild-moderate COPD</classLabel>
<newAxiom>'depletion of Oribacterium in lung of severe COPD patient compared to mild-moderate COPD' SubClassOf 'has microbe depleted in diseased host' some 'Oribacterium'</newAxiom>
<newAxiom>'depletion of Oribacterium in lung of severe COPD patient compared to mild-moderate COPD' SubClassOf 'bacterial change in lung of severe COPD patient compared to mild-moderate COPD'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000629</classIRI>
<classLabel>depletion of Eikenella in lung of severe COPD patient compared to mild-moderate COPD</classLabel>
<newAxiom>'depletion of Eikenella in lung of severe COPD patient compared to mild-moderate COPD' SubClassOf 'bacterial change in lung of severe COPD patient compared to mild-moderate COPD'</newAxiom>
<newAxiom>'depletion of Eikenella in lung of severe COPD patient compared to mild-moderate COPD' SubClassOf 'has microbe depleted in diseased host' some 'Eikenella'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_91994</classIRI>
<classLabel>unclassified Staphylococcus</classLabel>
<newAxiom>'unclassified Staphylococcus' SubClassOf 'Staphylococcus'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000630</classIRI>
<classLabel>depletion of Moraxella in lung of severe COPD patient compared to mild-moderate COPD</classLabel>
<newAxiom>'depletion of Moraxella in lung of severe COPD patient compared to mild-moderate COPD' SubClassOf 'has microbe depleted in diseased host' some 'Moraxella'</newAxiom>
<newAxiom>'depletion of Moraxella in lung of severe COPD patient compared to mild-moderate COPD' SubClassOf 'bacterial change in lung of severe COPD patient compared to mild-moderate COPD'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000631</classIRI>
<classLabel>depletion of Actinobacillus in lung of severe COPD patient compared to mild-moderate COPD</classLabel>
<newAxiom>'depletion of Actinobacillus in lung of severe COPD patient compared to mild-moderate COPD' SubClassOf 'bacterial change in lung of severe COPD patient compared to mild-moderate COPD'</newAxiom>
<newAxiom>'depletion of Actinobacillus in lung of severe COPD patient compared to mild-moderate COPD' SubClassOf 'has microbe depleted in diseased host' some 'Actinobacillus'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000632</classIRI>
<classLabel>depletion of Firmicutes in lung of severe COPD patient compared to mild-moderate COPD</classLabel>
<newAxiom>'depletion of Firmicutes in lung of severe COPD patient compared to mild-moderate COPD' SubClassOf 'has microbe depleted in diseased host' some 'Bacillota'</newAxiom>
<newAxiom>'depletion of Firmicutes in lung of severe COPD patient compared to mild-moderate COPD' SubClassOf 'bacterial change in lung of severe COPD patient compared to mild-moderate COPD'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000633</classIRI>
<classLabel>depletion of Proteobacteria in lung of severe COPD patient compared to mild-moderate COPD</classLabel>
<newAxiom>'depletion of Proteobacteria in lung of severe COPD patient compared to mild-moderate COPD' SubClassOf 'has microbe depleted in diseased host' some 'Pseudomonadota'</newAxiom>
<newAxiom>'depletion of Proteobacteria in lung of severe COPD patient compared to mild-moderate COPD' SubClassOf 'bacterial change in lung of severe COPD patient compared to mild-moderate COPD'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000634</classIRI>
<classLabel>depletion of Haemophilus parahaemolyticus in lung of severe COPD patient compared to mild-moderate COPD</classLabel>
<newAxiom>'depletion of Haemophilus parahaemolyticus in lung of severe COPD patient compared to mild-moderate COPD' SubClassOf 'has microbe depleted in diseased host' some 'Haemophilus parahaemolyticus'</newAxiom>
<newAxiom>'depletion of Haemophilus parahaemolyticus in lung of severe COPD patient compared to mild-moderate COPD' SubClassOf 'bacterial change in lung of severe COPD patient compared to mild-moderate COPD'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000637</classIRI>
<classLabel>expansion of Proteobacteria in gut of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Proteobacteria in gut of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Pseudomonadota'</newAxiom>
<newAxiom>'expansion of Proteobacteria in gut of COPD patient compared to healthy human' SubClassOf 'bacterial change in gut of COPD patient compared to healthy human'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000638</classIRI>
<classLabel>expansion of Actinobacteria in gut of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Actinobacteria in gut of COPD patient compared to healthy human' SubClassOf 'bacterial change in gut of COPD patient compared to healthy human'</newAxiom>
<newAxiom>'expansion of Actinobacteria in gut of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Actinomycetota'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000639</classIRI>
<classLabel>expansion of Haemophilus in gut of COPD patient compared to healthy human</classLabel>
<newAxiom>'expansion of Haemophilus in gut of COPD patient compared to healthy human' SubClassOf 'has microbe expanded in diseased host' some 'Haemophilus'</newAxiom>
<newAxiom>'expansion of Haemophilus in gut of COPD patient compared to healthy human' SubClassOf 'bacterial change in gut of COPD patient compared to healthy human'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_13687</classIRI>
<classLabel>Sphingomonas</classLabel>
<newAxiom>'Sphingomonas' SubClassOf 'Sphingomonadaceae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_3052230</classIRI>
<classLabel>Hepacivirus hominis</classLabel>
<newAxiom>'Hepacivirus hominis' SubClassOf 'Riboviria'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_186824</classIRI>
<classLabel>Thermoactinomycetaceae</classLabel>
<newAxiom>'Thermoactinomycetaceae' SubClassOf 'Bacillales'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_328812</classIRI>
<classLabel>Parabacteroides goldsteinii</classLabel>
<newAxiom>'Parabacteroides goldsteinii' SubClassOf 'Parabacteroides'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_33035</classIRI>
<classLabel>Blautia producta</classLabel>
<newAxiom>'Blautia producta' SubClassOf 'Blautia'</newAxiom>
<newAxiom>'Blautia producta' SubClassOf 'microbe susceptibly depleted (compared to fibromyalgia patients) in gut of human with disease' some 'rheumatoid arthritis'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_118747</classIRI>
<classLabel>Bulleidia</classLabel>
<newAxiom>'Bulleidia' SubClassOf 'Erysipelotrichaceae'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000660</classIRI>
<classLabel>depletion of Lactobacillus in gut of COPD patient compared to healthy human</classLabel>
<newAxiom>'depletion of Lactobacillus in gut of COPD patient compared to healthy human' SubClassOf 'has microbe depleted in diseased host' some 'Lactobacillus'</newAxiom>
<newAxiom>'depletion of Lactobacillus in gut of COPD patient compared to healthy human' SubClassOf 'bacterial change in gut of COPD patient compared to healthy human'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000661</classIRI>
<classLabel>depletion of Gemella in gut of COPD patient compared to healthy human</classLabel>
<newAxiom>'depletion of Gemella in gut of COPD patient compared to healthy human' SubClassOf 'bacterial change in gut of COPD patient compared to healthy human'</newAxiom>
<newAxiom>'depletion of Gemella in gut of COPD patient compared to healthy human' SubClassOf 'has microbe depleted in diseased host' some 'Gemella'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000662</classIRI>
<classLabel>depletion of Neisseria in gut of COPD patient compared to healthy human</classLabel>
<newAxiom>'depletion of Neisseria in gut of COPD patient compared to healthy human' SubClassOf 'bacterial change in gut of COPD patient compared to healthy human'</newAxiom>
<newAxiom>'depletion of Neisseria in gut of COPD patient compared to healthy human' SubClassOf 'has microbe depleted in diseased host' some 'Neisseria'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_186827</classIRI>
<classLabel>Aerococcaceae</classLabel>
<newAxiom>'Aerococcaceae' SubClassOf 'Lactobacillales'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_539</classIRI>
<classLabel>Eikenella corrodens</classLabel>
<newAxiom>'Eikenella corrodens' SubClassOf 'Eikenella'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_2049</classIRI>
<classLabel>Actinomycetaceae</classLabel>
<newAxiom>'Actinomycetaceae' SubClassOf 'Actinomycetes'</newAxiom>
</newClass>
<newClass>
<classIRI>http://purl.obolibrary.org/obo/OHMI_0000670</classIRI>
<classLabel>bacterial change in sputum of severe COPD patient compared to mild-moderate COPD</classLabel>
<newAxiom>'bacterial change in sputum of severe COPD patient compared to mild-moderate COPD' SubClassOf 'COPD human oral microbiome interaction'</newAxiom>
</newClass>
</newClasses>
<deletedClasses>
<deletedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_538999</classIRI>
<classLabel>Clostridiales incertae sedis</classLabel>
<newAxiom>'Clostridiales incertae sedis' SubClassOf 'Clostridiales'</newAxiom>
</deletedClass>
<deletedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_1532</classIRI>
<classLabel>Blautia coccoides</classLabel>
<newAxiom>'Blautia coccoides' SubClassOf 'Blautia'</newAxiom>
<newAxiom>'Blautia coccoides' SubClassOf 'microbe susceptibly depleted (compared to fibromyalgia patients) in gut of human with disease' some 'rheumatoid arthritis'</newAxiom>
</deletedClass>
<deletedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_11103</classIRI>
<classLabel>Hepacivirus C</classLabel>
<newAxiom>'Hepacivirus C' SubClassOf 'Viruses'</newAxiom>
</deletedClass>
<deletedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_1535326</classIRI>
<classLabel>Candida Debaryomycetaceae</classLabel>
<newAxiom>'Candida Debaryomycetaceae' SubClassOf 'Saccharomycetales'</newAxiom>
</deletedClass>
<deletedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_1505663</classIRI>
<classLabel>Erysipelatoclostridium</classLabel>
<newAxiom>'Erysipelatoclostridium' SubClassOf 'Erysipelotrichaceae'</newAxiom>
</deletedClass>
<deletedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_541000</classIRI>
<classLabel>Ruminococcaceae</classLabel>
<newAxiom>'Ruminococcaceae' SubClassOf 'Clostridiales'</newAxiom>
</deletedClass>
<deletedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_68525</classIRI>
<classLabel>delta/epsilon subdivisions</classLabel>
<newAxiom>'delta/epsilon subdivisions' SubClassOf 'Proteobacteria'</newAxiom>
</deletedClass>
<deletedClass>
<classIRI>http://purl.obolibrary.org/obo/NCBITaxon_186813</classIRI>
<classLabel>unclassified Clostridiales</classLabel>
<newAxiom>'unclassified Clostridiales' SubClassOf 'Clostridiales'</newAxiom>
</deletedClass>
</deletedClasses>
</diffReport>