Class ID,Preferred Label,Synonyms,Definitions,Obsolete,CUI,Semantic Types,Parents,amino acid 1 letter code,amino acid 3 letter code,amino acid modification,biosapiens,database_cross_reference,dbsnp variant terms,DBVAR,definition,ensembl variant terms,has_exact_synonym,has_obo_format_version,has_obo_namespace,has_property,has_related_synonym,has_scope,http://data.bioontology.org/metadata/treeView,http://purl.obolibrary.org/obo/TEMP#biosapiens,http://purl.obolibrary.org/obo/TEMP#DBVAR,http://purl.obolibrary.org/obo/TEMP#SBOLV,http://purl.obolibrary.org/obo/TEMP#SOFA,http://www.geneontology.org/formats/oboInOwl#auto-generated-by,http://www.geneontology.org/formats/oboInOwl#created_by,http://www.geneontology.org/formats/oboInOwl#creation_date,http://www.geneontology.org/formats/oboInOwl#date,http://www.geneontology.org/formats/oboInOwl#default-namespace,http://www.geneontology.org/formats/oboInOwl#id,http://www.geneontology.org/formats/oboInOwl#saved-by,http://www.w3.org/2000/01/rdf-schema#comment,http://www.w3.org/2000/01/rdf-schema#label,http://www.w3.org/2002/07/owl#deprecated,http://www.w3.org/2004/02/skos/core#notation,in_subset,is_property_of,is_represented_by,represents,RNA modification,subset_property,synonym_type_property
http://purl.obolibrary.org/obo/SO_0000627,insulator,insulator element,A transcriptional cis regulatory region that when located between a CM and a gene's promoter prevents the CRM from modulating that genes expression.,false,,,http://purl.obolibrary.org/obo/SBOL_0000027,,,,,http://en.wikipedia.org/wiki/Insulator_(genetics),,,A transcriptional cis regulatory region that when located between a CM and a gene's promoter prevents the CRM from modulating that genes expression.,,insulator element,,sequence,,,,http://purl.obolibrary.org/obo/SBOL_0000027,,,,,,,,,,SO:0000627,,,insulator,,SO:0000627,http://purl.obolibrary.org/obo/TEMP#SBOLV|http://purl.obolibrary.org/obo/TEMP#SOFA,,,,,,
http://purl.obolibrary.org/obo/SBOL_0000006,terminator symbol,,Symbol to represent the sequence of DNA located either at the end of the transcript that causes RNA polymerase to terminate transcription.,false,,,http://purl.obolibrary.org/obo/SBOL_0000000,,,,,SO:0000141,,,Symbol to represent the sequence of DNA located either at the end of the transcript that causes RNA polymerase to terminate transcription.,,,,sbol,,,,http://purl.obolibrary.org/obo/SBOL_0000000,,,,,,jackie,2013-04-11T18:23:06Z,,,SBOL:0000006,,,terminator symbol,,SBOL:0000006,,,,http://purl.obolibrary.org/obo/SO_0000141,,,
http://purl.obolibrary.org/obo/SBOL_0000004,cds symbol,,"Symbol to represent a contiguous sequence which begins with, and includes, a start codon and ends with, and includes, a stop codon.",false,,,http://purl.obolibrary.org/obo/SBOL_0000000,,,,,SO:0000316,,,"Symbol to represent a contiguous sequence which begins with, and includes, a start codon and ends with, and includes, a stop codon.",,,,sbol,,,,http://purl.obolibrary.org/obo/SBOL_0000000,,,,,,jackie,2013-04-11T18:23:06Z,,,SBOL:0000004,,,cds symbol,,SBOL:0000004,,,,http://purl.obolibrary.org/obo/SO_0000316,,,
http://purl.obolibrary.org/obo/SBOL_0000008,ribonuclease site symbol,,Symbol to represent a region of DNA sequence that codes for a ribonuclease cleavage site on the RNA transcript.,false,,,http://purl.obolibrary.org/obo/SBOL_0000000,,,,,,,,Symbol to represent a region of DNA sequence that codes for a ribonuclease cleavage site on the RNA transcript.,,,,sbol,,,,http://purl.obolibrary.org/obo/SBOL_0000000,,,,,,jackie,2013-04-11T18:23:06Z,,,SBOL:0000008,,,ribonuclease site symbol,,SBOL:0000008,,,,http://purl.obolibrary.org/obo/SO_0000296,,,
http://purl.obolibrary.org/obo/SBOL_0000003,operator symbol,,Symbol to represent a regulatory element of an operon to which activators or repressors bind thereby effecting translation of genes in that operon.,false,,,http://purl.obolibrary.org/obo/SBOL_0000000,,,,,SO:0000057,,,Symbol to represent a regulatory element of an operon to which activators or repressors bind thereby effecting translation of genes in that operon.,,,,sbol,,,,http://purl.obolibrary.org/obo/SBOL_0000000,,,,,,jackie,2013-04-11T18:23:06Z,,,SBOL:0000003,,,operator symbol,,SBOL:0000003,,,,http://purl.obolibrary.org/obo/SO_0000057,,,
http://purl.obolibrary.org/obo/SBOL_0000002,assembly scar symbol,,Symbol to represent a region of DNA sequence formed from the ligation of two sticky ends where the palindrome is broken and no longer comprises the recognition site and thus cannot be re-cut by the restriction enzymes used to create the sticky ends.,false,,,http://purl.obolibrary.org/obo/SBOL_0000000,,,,,,,,Symbol to represent a region of DNA sequence formed from the ligation of two sticky ends where the palindrome is broken and no longer comprises the recognition site and thus cannot be re-cut by the restriction enzymes used to create the sticky ends.,,,,sbol,,,,http://purl.obolibrary.org/obo/SBOL_0000000,,,,,,jackie,2013-04-11T15:25:29Z,,,SBOL:0000002,,,assembly scar symbol,,SBOL:0000002,,,,,,,
http://purl.obolibrary.org/obo/SBOL_0000007,insulator symbol,,Symbol to represent a transcriptional cis regulatory region that when located between a CM and a gene's promoter prevents the CRM from modulating that genes expression.,false,,,http://purl.obolibrary.org/obo/SBOL_0000000,,,,,SO:0000627,,,Symbol to represent a transcriptional cis regulatory region that when located between a CM and a gene's promoter prevents the CRM from modulating that genes expression.,,,,sbol,,,,http://purl.obolibrary.org/obo/SBOL_0000000,,,,,,jackie,2013-04-11T18:23:06Z,,,SBOL:0000007,,,insulator symbol,,SBOL:0000007,,,,http://purl.obolibrary.org/obo/SO_0000627,,,
http://purl.obolibrary.org/obo/SBOL_0000009,rna stability element symbol,,Symbol to represent a RNA secondary structure that affects the stability of an RNA molecule.,false,,,http://purl.obolibrary.org/obo/SBOL_0000000,,,,,SO:0001957,,,Symbol to represent a RNA secondary structure that affects the stability of an RNA molecule.,,,,sbol,,,,http://purl.obolibrary.org/obo/SBOL_0000000,,,,,,jackie,2013-04-11T18:23:06Z,,,SBOL:0000009,,,rna stability element symbol,,SBOL:0000009,,,,,,,
http://purl.obolibrary.org/obo/SBOL_0000005,ribosome entry site symbol,,Symbol to represent a region in mRNA where ribosome assembles.,false,,,http://purl.obolibrary.org/obo/SBOL_0000000,,,,,SO:0000139,,,Symbol to represent a region in mRNA where ribosome assembles.,,,,sbol,,,,http://purl.obolibrary.org/obo/SBOL_0000000,,,,,,jackie,2013-04-11T18:23:06Z,,,SBOL:0000005,,,ribosome entry site symbol,,SBOL:0000005,,,,http://purl.obolibrary.org/obo/SO_0000139,,,
http://purl.obolibrary.org/obo/SBOL_0000001,promoter symbol,,Symbol to represent a regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery.,false,,,http://purl.obolibrary.org/obo/SBOL_0000000,,,,,SO:0000167,,,Symbol to represent a regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery.,,,,sbol,,,,http://purl.obolibrary.org/obo/SBOL_0000000,,,,,,jackie,2013-04-11T15:19:30Z,,,SBOL:0000001,,,promoter symbol,,SBOL:0000001,,,,http://purl.obolibrary.org/obo/SO_0000167,,,
http://purl.obolibrary.org/obo/SBOL_0000000,SBOL Visual Symbol,,"Pictogram that serves as representation of a DNAComponent, indicating the function of the DNAComponent in the enclosing design.",false,,,http://www.w3.org/2002/07/owl#Thing,,,,,,,,"Pictogram that serves as representation of a DNAComponent, indicating the function of the DNAComponent in the enclosing design.",,,,sbol,,,,http://www.w3.org/2002/07/owl#Thing,,,,,,jackie,2013-04-11T15:19:00Z,,,SBOL:0000000,,,SBOL Visual Symbol,,SBOL:0000000,,,,http://purl.obolibrary.org/obo/SBOL_0000023,,,
http://purl.obolibrary.org/obo/SO_0000552,Shine_Dalgarno_sequence,RBS|Shine Dalgarno sequence|five prime ribosome binding site|Shine-Dalgarno sequence,A region in the 5' UTR that pairs with the 16S rRNA during formation of the preinitiation complex.|Not found in Eukaryotic sequence.,false,,,http://purl.obolibrary.org/obo/SO_0000139,,,,,http://en.wikipedia.org/wiki/Shine-Dalgarno_sequence,,,A region in the 5' UTR that pairs with the 16S rRNA during formation of the preinitiation complex.,,Shine Dalgarno sequence|five prime ribosome binding site|Shine-Dalgarno sequence,,sequence,,RBS,,http://purl.obolibrary.org/obo/SO_0000139,,,,,,,,,,SO:0000552,,Not found in Eukaryotic sequence.,Shine_Dalgarno_sequence,,SO:0000552,http://purl.obolibrary.org/obo/TEMP#SBOLV,,,,,,
http://purl.obolibrary.org/obo/SO_0000139,ribosome_entry_site,ribosome entry site,Region in mRNA where ribosome assembles.,false,,,http://purl.obolibrary.org/obo/SBOL_0000027,,,,,,,,Region in mRNA where ribosome assembles.,,ribosome entry site,,sequence,,,,http://purl.obolibrary.org/obo/SBOL_0000027,,,,,,,,,,SO:0000139,,,ribosome_entry_site,,SO:0000139,http://purl.obolibrary.org/obo/TEMP#SBOLV|http://purl.obolibrary.org/obo/TEMP#SOFA,,,,,,
http://purl.obolibrary.org/obo/SO_0001647,kozak_sequence,kozak sequence|kozak consensus|kozak consensus sequence,"A kind of ribosome entry site, specific to Eukaryotic organisms that overlaps part of both 5' UTR and CDS sequence.",false,,,http://purl.obolibrary.org/obo/SO_0000139,,,,,http://en.wikipedia.org/wiki/Kozak_consensus_sequence,,,"A kind of ribosome entry site, specific to Eukaryotic organisms that overlaps part of both 5' UTR and CDS sequence.",,kozak sequence|kozak consensus|kozak consensus sequence,,sequence,,,,http://purl.obolibrary.org/obo/SO_0000139,,,,,,kareneilbeck,2010-06-07T03:12:20Z,,,SO:0001647,,,kozak_sequence,,SO:0001647,http://purl.obolibrary.org/obo/TEMP#SBOLV|http://purl.obolibrary.org/obo/TEMP#SOFA,,,,,,
http://purl.obolibrary.org/obo/SBOL_0000013,primer binding site symbol,,"Symbol to represent a non-covalent primer binding site for initiation of replication, transcription, or reverse transcription.",false,,,http://purl.obolibrary.org/obo/SBOL_0000000,,,,,SO:0005850,,,"Symbol to represent a non-covalent primer binding site for initiation of replication, transcription, or reverse transcription.",,,,sbol,,,,http://purl.obolibrary.org/obo/SBOL_0000000,,,,,,jackie,2013-04-11T18:23:06Z,,,SBOL:0000013,,,primer binding site symbol,,SBOL:0000013,,,,,,,
http://purl.obolibrary.org/obo/SBOL_0000014,restriction enzyme recognition site symbol,,Symbol to represent a nucleotide region (usually a palindrome) that is recognized by a restriction enzyme. This may or may not be equal to the restriction enzyme binding site.,false,,,http://purl.obolibrary.org/obo/SBOL_0000000,,,,,SO:0001687,,,Symbol to represent a nucleotide region (usually a palindrome) that is recognized by a restriction enzyme. This may or may not be equal to the restriction enzyme binding site.,,,,sbol,,,,http://purl.obolibrary.org/obo/SBOL_0000000,,,,,,jackie,2013-04-11T18:23:06Z,,,SBOL:0000014,,,restriction enzyme recognition site symbol,,SBOL:0000014,,,,,,,
http://purl.obolibrary.org/obo/SBOL_0000015,blunt restriction site symbol,,"Symbol to represent a restriction enzyme recognition site that, when cleaved, results in no overhangs.",false,,,http://purl.obolibrary.org/obo/SBOL_0000014,,,,,SO:0001691,,,"Symbol to represent a restriction enzyme recognition site that, when cleaved, results in no overhangs.",,,,sbol,,,,http://purl.obolibrary.org/obo/SBOL_0000014,,,,,,jackie,2013-04-11T18:23:06Z,,,SBOL:0000015,,,blunt restriction site symbol,,SBOL:0000015,,,,,,,
http://purl.obolibrary.org/obo/SBOL_0000012,origin of replication symbol,,Symbol to represent the origin of replication; starting site for duplication of a nucleic acid molecule to give two identical copies.,false,,,http://purl.obolibrary.org/obo/SBOL_0000000,,,,,SO:0000296,,,Symbol to represent the origin of replication; starting site for duplication of a nucleic acid molecule to give two identical copies.,,,,sbol,,,,http://purl.obolibrary.org/obo/SBOL_0000000,,,,,,jackie,2013-04-11T18:23:06Z,,,SBOL:0000012,,,origin of replication symbol,,SBOL:0000012,,,,,,,
http://purl.obolibrary.org/obo/SBOL_0000010,protease site symbol,,Symbol to represent a polypeptide_region that codes for a protease cleavage site.,false,,,http://purl.obolibrary.org/obo/SBOL_0000000,,,,,SO:0001956,,,Symbol to represent a polypeptide_region that codes for a protease cleavage site.,,,,sbol,,,,http://purl.obolibrary.org/obo/SBOL_0000000,,,,,,jackie,2013-04-11T18:23:06Z,,,SBOL:0000010,,,protease site symbol,,SBOL:0000010,,,,,,,
http://purl.obolibrary.org/obo/SBOL_0000016,5' sticky restriction site symbol,,"Symbol to represent a restriction enzyme recognition site that, when cleaved, results in 5-prime overhangs.",false,,,http://purl.obolibrary.org/obo/SBOL_0000014,,,,,,,,"Symbol to represent a restriction enzyme recognition site that, when cleaved, results in 5-prime overhangs.",,,,sbol,,,,http://purl.obolibrary.org/obo/SBOL_0000014,,,,,,jackie,2013-04-11T18:23:06Z,,,SBOL:0000016,,,5' sticky restriction site symbol,,SBOL:0000016,,,,,,,
http://purl.obolibrary.org/obo/SBOL_0000011,protein stability element symbol,,Symbol to represent a polypeptide region that proves structure in a protein that affects the stability of the protein.,false,,,http://purl.obolibrary.org/obo/SBOL_0000000,,,,,SO:0001955,,,Symbol to represent a polypeptide region that proves structure in a protein that affects the stability of the protein.,,,,sbol,,,,http://purl.obolibrary.org/obo/SBOL_0000000,,,,,,jackie,2013-04-11T18:23:06Z,,,SBOL:0000011,,,protein stability element symbol,,SBOL:0000011,,,,,,,
http://purl.obolibrary.org/obo/SBOL_0000018,5' overhang symbol,,Symbol to represent a terminal region of DNA sequence where the end of the region is not blunt ended and the exposed single strand terminates at the 3' end.,false,,,http://purl.obolibrary.org/obo/SBOL_0000000,,,,,SO:0001932,,,Symbol to represent a terminal region of DNA sequence where the end of the region is not blunt ended and the exposed single strand terminates at the 3' end.,,,,sbol,,,,http://purl.obolibrary.org/obo/SBOL_0000000,,,,,,jackie,2013-04-11T18:23:06Z,,,SBOL:0000018,,,5' overhang symbol,,SBOL:0000018,,,,http://purl.obolibrary.org/obo/SO_0001695,,,
http://purl.obolibrary.org/obo/SBOL_0000019,3' overhang symbol,,Symbol to represent a terminal region of DNA sequence where the end of the region is not blunt ended and the exposed single strand terminates at the 3' end.,false,,,http://purl.obolibrary.org/obo/SBOL_0000000,,,,,SO:0001933,,,Symbol to represent a terminal region of DNA sequence where the end of the region is not blunt ended and the exposed single strand terminates at the 3' end.,,,,sbol,,,,http://purl.obolibrary.org/obo/SBOL_0000000,,,,,,jackie,2013-04-11T18:23:06Z,,,SBOL:0000019,,,3' overhang symbol,,SBOL:0000019,,,,http://purl.obolibrary.org/obo/SO_0001695,,,
http://purl.obolibrary.org/obo/SBOL_0000017,3' sticky restriction site symbol,,"Symbol to represent a restriction enzyme recognition site that, when cleaved, results in 3-prime overhangs.",false,,,http://purl.obolibrary.org/obo/SBOL_0000014,,,,,,,,"Symbol to represent a restriction enzyme recognition site that, when cleaved, results in 3-prime overhangs.",,,,sbol,,,,http://purl.obolibrary.org/obo/SBOL_0000014,,,,,,jackie,2013-04-11T18:23:06Z,,,SBOL:0000017,,,3' sticky restriction site symbol,,SBOL:0000017,,,,,,,
http://purl.obolibrary.org/obo/SO_0000316,CDS,coding sequence,"A contiguous sequence which begins with, and includes, a start codon and ends with, and includes, a stop codon.",false,,,http://purl.obolibrary.org/obo/SBOL_0000027,,,,,,,,"A contiguous sequence which begins with, and includes, a start codon and ends with, and includes, a stop codon.",,coding sequence,,sequence,,,,http://purl.obolibrary.org/obo/SBOL_0000027,,,,,,,,,,SO:0000316,,,CDS,,SO:0000316,http://purl.obolibrary.org/obo/TEMP#SBOLV|http://purl.obolibrary.org/obo/TEMP#SOFA,,,,,,
http://purl.obolibrary.org/obo/SO_0000057,operator,operator segment,A regulatory element of an operon to which activators or repressors bind thereby effecting translation of genes in that operon.,false,,,http://purl.obolibrary.org/obo/SBOL_0000027,,,,,http://en.wikipedia.org/wiki/Operator_(biology)#Operator,,,A regulatory element of an operon to which activators or repressors bind thereby effecting translation of genes in that operon.,,operator segment,,sequence,,,,http://purl.obolibrary.org/obo/SBOL_0000027,,,,,,,,,,SO:0000057,,,operator,,SO:0000057,http://purl.obolibrary.org/obo/TEMP#SBOLV|http://purl.obolibrary.org/obo/TEMP#SOFA,,,,,,
http://purl.obolibrary.org/obo/SBOL_0000022,SBOL:Core Term,,,true,,,,,,,,,,,,,,,sbol,,,,,,,,,,jackie,2013-07-17T01:44:12Z,,,SBOL:0000022,,,SBOL:Core Term,true,SBOL:0000022,,,,,,,
http://purl.obolibrary.org/obo/SBOL_0000026,SequenceAnnotation,,"Sequence Annotation The sequence annotation is the position and strand orientation of a notable sub-sequence found within the DnaComponent being described. Annotations provide the link which describes the DNA sequence of a component in terms of other components, subComponents. When a DNA component is abstract, SequenceAnnotations specify relative positions between subComponents.",false,,,http://www.w3.org/2002/07/owl#Thing,,,,,,,,"Sequence Annotation The sequence annotation is the position and strand orientation of a notable sub-sequence found within the DnaComponent being described. Annotations provide the link which describes the DNA sequence of a component in terms of other components, subComponents. When a DNA component is abstract, SequenceAnnotations specify relative positions between subComponents.",,,,sbol,,,,http://www.w3.org/2002/07/owl#Thing,,,,,,jackie,2013-07-17T01:48:15Z,,,SBOL:0000026,,,SequenceAnnotation,,SBOL:0000026,,,,,,,
http://purl.obolibrary.org/obo/SBOL_0000025,DNASequence,,"DNA Sequence The DNA sequence is a contiguous sequence of nucleotides. The sequence is a fundamental information object for synthetic biology and is needed to reuse components, replicate synthetic biology work, and to assemble new synthetic biological systems. Therefore, both experimental work and theoretical sequence composition research depend heavily on the exact base pair sequence specification associated with DnaComponents.",false,,,http://www.w3.org/2002/07/owl#Thing,,,,,,,,"DNA Sequence The DNA sequence is a contiguous sequence of nucleotides. The sequence is a fundamental information object for synthetic biology and is needed to reuse components, replicate synthetic biology work, and to assemble new synthetic biological systems. Therefore, both experimental work and theoretical sequence composition research depend heavily on the exact base pair sequence specification associated with DnaComponents.",,,,sbol,,,,http://www.w3.org/2002/07/owl#Thing,,,,,,jackie,2013-07-17T01:46:01Z,,,SBOL:0000025,,,DNASequence,,SBOL:0000025,,,,,,,
http://purl.obolibrary.org/obo/SBOL_0000027,type,,"Zero or more values of type URI (IETF RFC 2396) referencing the Sequence Ontology (see Appendix for commonly used terms). These provide a defined terminology of types of DnaComponents. This vocabulary may be extended, (use ""Request a Term"" http://sequenceontology.org).",false,,,http://www.w3.org/2002/07/owl#Thing,,,,,,,,"Zero or more values of type URI (IETF RFC 2396) referencing the Sequence Ontology (see Appendix for commonly used terms). These provide a defined terminology of types of DnaComponents. This vocabulary may be extended, (use ""Request a Term"" http://sequenceontology.org).",,,,sbol,,,,http://www.w3.org/2002/07/owl#Thing,,,,,,jackie,2013-07-17T01:53:34Z,,,SBOL:0000027,,,type,,SBOL:0000027,,http://purl.obolibrary.org/obo/SBOL_0000023,,,,,
http://purl.obolibrary.org/obo/SBOL_0000024,Collection,,"Collection A collection is an organizational container, a group of DnaComponents. For example, a set of restriction enzyme recognition sites, such as the components commonly used for BBF RFC 10 BioBricks could be grouped. A Collection might contain DNA components used in a specific project, lab, or custom 
grouping specified by the user.",false,,,http://www.w3.org/2002/07/owl#Thing,,,,,,,,"Collection A collection is an organizational container, a group of DnaComponents. For example, a set of restriction enzyme recognition sites, such as the components commonly used for BBF RFC 10 BioBricks could be grouped. A Collection might contain DNA components used in a specific project, lab, or custom 
grouping specified by the user.",,,,sbol,,,,http://www.w3.org/2002/07/owl#Thing,,,,,,jackie,2013-07-17T01:45:49Z,,,SBOL:0000024,,,Collection,,SBOL:0000024,,,,,,,
http://purl.obolibrary.org/obo/SBOL_0000020,signature symbol,,Symbol to represent a region of DNA sequence where developer information is encoded.,false,,,http://purl.obolibrary.org/obo/SBOL_0000000,,,,,,,,Symbol to represent a region of DNA sequence where developer information is encoded.,,,,sbol,,,,http://purl.obolibrary.org/obo/SBOL_0000000,,,,,,jackie,2013-04-11T18:23:06Z,,,SBOL:0000020,,,signature symbol,,SBOL:0000020,,,,,,,
http://purl.obolibrary.org/obo/SBOL_0000023,DNAComponent,,"A DNA component represents a segment of DNA that serves to  abstract the DNA sequence as an individual object, which can then be manipulated, combined, and reused in engineering new biological systems.",false,,,http://www.w3.org/2002/07/owl#Thing,,,,,,,,"A DNA component represents a segment of DNA that serves to  abstract the DNA sequence as an individual object, which can then be manipulated, combined, and reused in engineering new biological systems.",,,,sbol,,,,http://www.w3.org/2002/07/owl#Thing,,,,,,jackie,2013-07-17T01:27:13Z,,,SBOL:0000023,,,DNAComponent,,SBOL:0000023,,,,,,,
http://purl.obolibrary.org/obo/SBOL_0000021,user defined symbol,,Symbol to represent a region of a DNA sequence not covered by other SBOL Visual symbols.,false,,,http://purl.obolibrary.org/obo/SBOL_0000000,,,,,,,,Symbol to represent a region of a DNA sequence not covered by other SBOL Visual symbols.,,,,sbol,,,,http://purl.obolibrary.org/obo/SBOL_0000000,,,,,,jackie,2013-04-11T18:23:06Z,,,SBOL:0000021,,,user defined symbol,,SBOL:0000021,,,,,,,
http://purl.obolibrary.org/obo/SO_0001687,restriction_enzyme_recognition_site,restriction enzyme recognition site|restriction endonuclease recognition site,The nucleotide region (usually a palindrome) that is recognized by a restriction enzyme. This may or may not be equal to the restriction enzyme binding site.,false,,,http://purl.obolibrary.org/obo/SBOL_0000027,,,,,,,,The nucleotide region (usually a palindrome) that is recognized by a restriction enzyme. This may or may not be equal to the restriction enzyme binding site.,,restriction enzyme recognition site|restriction endonuclease recognition site,,sequence,,,,http://purl.obolibrary.org/obo/SBOL_0000027,,,,,,kareneilbeck,2010-10-29T12:29:57Z,,,SO:0001687,,,restriction_enzyme_recognition_site,,SO:0001687,http://purl.obolibrary.org/obo/TEMP#SBOLV,,,,,,
http://purl.obolibrary.org/obo/SO_0000296,origin_of_replication,ori|origin of replication,The origin of replication; starting site for duplication of a nucleic acid molecule to give two identical copies.,false,,,http://purl.obolibrary.org/obo/SBOL_0000027,,,,,http://en.wikipedia.org/wiki/Origin_of_replication,,,The origin of replication; starting site for duplication of a nucleic acid molecule to give two identical copies.,,ori|origin of replication,,sequence,,,,http://purl.obolibrary.org/obo/SBOL_0000027,,,,,,,,,,SO:0000296,,,origin_of_replication,,SO:0000296,http://purl.obolibrary.org/obo/TEMP#SBOLV|http://purl.obolibrary.org/obo/TEMP#SOFA,,,,,,
http://purl.obolibrary.org/obo/SO_0000167,promoter,promoter sequence,A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery.|This term is mapped to MGED. Do not obsolete without consulting MGED ontology. The region on a DNA molecule involved in RNA polymerase binding to initiate transcription.,false,,,http://purl.obolibrary.org/obo/SBOL_0000027,,,,,,,,A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the basal transcription machinery.,,promoter sequence,,sequence,,,,http://purl.obolibrary.org/obo/SBOL_0000027,,,,,,,,,,SO:0000167,,This term is mapped to MGED. Do not obsolete without consulting MGED ontology. The region on a DNA molecule involved in RNA polymerase binding to initiate transcription.,promoter,,SO:0000167,http://purl.obolibrary.org/obo/TEMP#SBOLV|http://purl.obolibrary.org/obo/TEMP#SOFA,,,,,,
http://purl.obolibrary.org/obo/SO_0001692,sticky_end_restriction_enzyme_cleavage_site,sticky end restriction enzyme cleavage site,,false,,,http://purl.obolibrary.org/obo/SO_0001687,,,,,,,,,,,,sequence,,sticky end restriction enzyme cleavage site,,http://purl.obolibrary.org/obo/SO_0001687,,,,,,kareneilbeck,2010-10-29T12:40:50Z,,,SO:0001692,,,sticky_end_restriction_enzyme_cleavage_site,,SO:0001692,http://purl.obolibrary.org/obo/TEMP#SBOLV,,,,,,
http://purl.obolibrary.org/obo/SO_0001691,blunt_end_restriction_enzyme_cleavage_site,blunt end restriction enzyme cleavage site,,false,,,http://purl.obolibrary.org/obo/SO_0001687,,,,,,,,,,blunt end restriction enzyme cleavage site,,sequence,,,,http://purl.obolibrary.org/obo/SO_0001687,,,,,,kareneilbeck,2010-10-29T12:39:53Z,,,SO:0001691,,,blunt_end_restriction_enzyme_cleavage_site,,SO:0001691,http://purl.obolibrary.org/obo/TEMP#SBOLV,,,,,,
http://purl.obolibrary.org/obo/SO_0001695,restriction_enzyme_single_strand_overhang,sticky end|single strand overhang,A terminal region of DNA sequence where the end of the region is not blunt ended.,false,,,http://purl.obolibrary.org/obo/SBOL_0000027,,,,,,,,A terminal region of DNA sequence where the end of the region is not blunt ended.,,single strand overhang,,sequence,,sticky end,,http://purl.obolibrary.org/obo/SBOL_0000027,,,,,,kareneilbeck,2010-10-29T12:48:35Z,,,SO:0001695,,,restriction_enzyme_single_strand_overhang,,SO:0001695,http://purl.obolibrary.org/obo/TEMP#SBOLV,,,,,,
http://purl.obolibrary.org/obo/SO_0000141,terminator,terminator sequence,The sequence of DNA located either at the end of the transcript that causes RNA polymerase to terminate transcription.,false,,,http://purl.obolibrary.org/obo/SBOL_0000027,,,,,http://en.wikipedia.org/wiki/Terminator_(genetics),,,The sequence of DNA located either at the end of the transcript that causes RNA polymerase to terminate transcription.,,terminator sequence,,sequence,,,,http://purl.obolibrary.org/obo/SBOL_0000027,,,,,,,,,,SO:0000141,,,terminator,,SO:0000141,http://purl.obolibrary.org/obo/TEMP#SBOLV|http://purl.obolibrary.org/obo/TEMP#SOFA,,,,,,
