Class ID,Preferred Label,Synonyms,Definitions,Obsolete,CUI,Semantic Types,Parents,alternative term,antisymmetric property,BFO CLIF specification label,BFO OWL specification label,Contributor,Coverage,Creator,curator note,Date,definition,definition editor,definition source,Description,description_case_significance_id,description_effective_time,description_language_code,description_module_id,description_term,description_type_id,editor note,editor preferred term,elucidation,example of usage,expand assertion to,expand expression to,first order logic expression,Format,grouped_relation,has associated axiom(fol),has associated axiom(nl),has axiom label,has curation status,has ID digit count,has ID policy for,has ID prefix,has ID range allocated to,has obsolescence reason,has_definition_status_id,has_description,has_description_id,has_effective_time,has_id,has_module_id,has_relationship_characteristic_type_id,has_relationship_destination_id,has_relationship_effective_time,has_relationship_id,has_relationship_modifier_id,has_relationship_module_id,has_relationship_relationship_group,has_relationship_source_id,has_relationship_type_id,http://data.bioontology.org/metadata/prefixIRI,http://protege.stanford.edu/plugins/owl/protege#defaultLanguage,http://purl.org/dc/elements/1.1/license,http://purl.org/dc/elements/1.1/member,http://www.w3.org/2000/01/rdf-schema#isDefinedBy,http://www.w3.org/2000/01/rdf-schema#seeAlso,http://xmlns.com/foaf/0.1/homepage,http://xmlns.com/foaf/0.1/mbox,imported from,in branch,is allocated id range,is denotator type,is_active_description,is_active_term,is_description_of,is_destination_of,is_relationship_active,is_source_of,Language,OBO foundry unique label,ontology term requester,Publisher,Relation,Resource Identifier,Resource Type,Rights Management,Source,Subject and Keywords,term replaced by,term tracker item,the same as,Title
http://purl.obolibrary.org/obo/OGMS_0000078,pathological anatomical structure,,"An anatomical structure (FMA) is pathological whenever (1) it has come into being as a result of changes in some pre-existing canonical anatomical structure, (2) through processes other than the expression of the normal complement of genes of an organism of the given type, and (3) is predisposed to have health-related consequences for the organism in question manifested by symptoms and signs.",false,,,http://purl.obolibrary.org/obo/BFO_0000040,,,,,,,,creation date: 2009-07-13T02:14:05Z,,"An anatomical structure (FMA) is pathological whenever (1) it has come into being as a result of changes in some pre-existing canonical anatomical structure, (2) through processes other than the expression of the normal complement of genes of an organism of the given type, and (3) is predisposed to have health-related consequences for the organism in question manifested by symptoms and signs.",Albert Goldfain,http://ontology.buffalo.edu/bio/ISMB/ISMB_Bio-ontologies.pdf,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000078,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000077,pathological formation,,"TODO: Define, relate to disorder, and place in the OGMS hierarchy.",false,,,http://purl.obolibrary.org/obo/BFO_0000040,,,,,,,,creation date: 2009-07-13T02:14:59Z,,"TODO: Define, relate to disorder, and place in the OGMS hierarchy.",Albert Goldfain,http://ontology.buffalo.edu/bio/ISMB/ISMB_Bio-ontologies.pdf,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000077,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000079,portion of pathological body substance,,"TODO: Define, relate to disorder, and place in the OGMS hierarchy.",false,,,http://purl.obolibrary.org/obo/BFO_0000040,,,,,,,,creation date: 2009-07-13T02:15:17Z,,"TODO: Define, relate to disorder, and place in the OGMS hierarchy.",Albert Goldfain,http://ontology.buffalo.edu/bio/ISMB/ISMB_Bio-ontologies.pdf,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000079,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000074,normal value,,A value for a quality reported in a lab report and asserted by the testing lab or the kit manufacturer to be normal based on a statistical treatment of values from a reference population.,false,,,http://purl.obolibrary.org/obo/BFO_0000031,,,,,,,,creation date: 2009-06-26T10:31:34Z,,A value for a quality reported in a lab report and asserted by the testing lab or the kit manufacturer to be normal based on a statistical treatment of values from a reference population.,Albert Goldfain,http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000074,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000073,diagnosis,,The representation of a conclusion of a diagnostic process.,false,,,http://purl.obolibrary.org/obo/IAO_0000027,,,,,,,,creation date: 2009-06-23T12:42:23Z,,The representation of a conclusion of a diagnostic process.,Albert Goldfain,http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000073,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_430975009,surgical piercing - action,,,false,,,https://bioportal.bioontology.org/ontologies/SCTO#SCTO_129300006,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_430975009,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_399455000,primary procedure,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_277367001,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_272103003,time patterns,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_272099008,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_129264002,SCT action,,,false,,,http://purl.obolibrary.org/obo/BFO_0000015|http://purl.obolibrary.org/obo/ogms.owl#SCTO_362981000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_129264002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_424226004,using device,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_405815000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_257544000,mechanism,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_362981000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_257544000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_36692007,known,,,false,,,https://bioportal.bioontology.org/ontologies/SCTO#SCTO_410514004,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_36692007,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_272512009,physiological value,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_362981000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_272512009,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_261424001,primary operation,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_399455000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_272396007,ranked category,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_362981000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_116686009,has specimen,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_410662002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_129284003,surgical action,,,false,,,https://bioportal.bioontology.org/ontologies/SCTO#SCTO_129264002|http://purl.obolibrary.org/obo/ogms.owl#SCTO_129264002_2,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_129284003,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_255231005,revision - value,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_272127001,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_246456000,episodicity,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_410662002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_246093002,component,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_410662002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_272741003,laterality,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_410662002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_260245000,finding value,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_362981000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_118169006,specimen source topography,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_410662002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000033,directive information content entity,,An information content entity whose concretizations indicate to their bearer how to realize them in a process.,false,,,http://purl.obolibrary.org/obo/IAO_0000030,,,,,,,,,,An information content entity whose concretizations indicate to their bearer how to realize them in a process.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000033,,,,,,,,http://purl.obolibrary.org/obo/iao.owl,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_258349007,grade,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_264752007,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/BFO_0000015,process,,"p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])",false,,,http://purl.obolibrary.org/obo/BFO_0000003,,,Process,process,,,,,,"p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])",,,,,,,,,,"BFO 2 Reference: The realm of occurrents is less pervasively marked by the presence of natural units than is the case in the realm of independent continuants. Thus there is here no counterpart of ‘object’. In BFO 1.0 ‘process’ served as such a counterpart. In BFO 2.0 ‘process’ is, rather, the occurrent counterpart of ‘material entity’. Those natural – as contrasted with engineered, which here means: deliberately executed – units which do exist in the realm of occurrents are typically either parasitic on the existence of natural units on the continuant side, or they are fiat in nature. Thus we can count lives; we can count football games; we can count chemical reactions performed in experiments or in chemical manufacturing. We cannot count the processes taking place, for instance, in an episode of insect mating behavior.Even where natural units are identifiable, for example cycles in a cyclical process such as the beating of a heart or an organism’s sleep/wake cycle, the processes in question form a sequence with no discontinuities (temporal gaps) of the sort that we find for instance where billiard balls or zebrafish or planets are separated by clear spatial gaps. Lives of organisms are process units, but they too unfold in a continuous series from other, prior processes such as fertilization, and they unfold in turn in continuous series of post-life processes such as post-mortem decay. Clear examples of boundaries of processes are almost always of the fiat sort (midnight, a time of death as declared in an operating theater or on a death certificate, the initiation of a state of war)",,,"the life of an organism|the course of a disease|the flight of a bird|a process of sleeping|your process of aging.|a process of cell-division, \ a beating of the heart|a process of meiosis",,,,,,(iff (Process a) (and (Occurrent a) (exists (b) (properTemporalPartOf b a)) (exists (c t) (and (MaterialEntity c) (specificallyDependsOnAt a c t))))) // axiom label in BFO2 CLIF: [083-003] ,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000015,,,,http://purl.obolibrary.org/obo/bfo.owl,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_272099008,descriptor,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_362981000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_272099008,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/BFO_0000001,entity,,,false,,,http://www.w3.org/2002/07/owl#Thing,,,Entity,entity,,,,,,,,,,,,,,,,"BFO 2 Reference: In all areas of empirical inquiry we encounter general terms of two sorts. First are general terms which refer to universals or types:animaltuberculosissurgical procedurediseaseSecond, are general terms used to refer to groups of entities which instantiate a given universal but do not correspond to the extension of any subuniversal of that universal because there is nothing intrinsic to the entities in question by virtue of which they – and only they – are counted as belonging to the given group. Examples are: animal purchased by the Emperortuberculosis diagnosed on a Wednesdaysurgical procedure performed on a patient from Stockholmperson identified as candidate for clinical trial #2056-555person who is signatory of Form 656-PPVpainting by Leonardo da VinciSuch terms, which represent what are called ‘specializations’ in [81|Entity doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example Werner Ceusters 'portions of reality' include 4 sorts, entities (as BFO construes them), universals, configurations, and relations. It is an open question as to whether entities as construed in BFO will at some point also include these other portions of reality. See, for example, 'How to track absolutely everything' at http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf",,An entity is anything that exists or has existed or will exist. (axiom label in BFO2 Reference: [001-001]),your body mass index|Verdi’s Requiem|Julius Caesar|the Second World War,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000001,,,,http://purl.obolibrary.org/obo/bfo.owl,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000090,treatment,,A processual entity whose completion is hypothesized (by a healthcare provider) to alleviate the signs and symptoms associated with a disorder,false,,,http://purl.obolibrary.org/obo/BFO_0000015,,,,,,,,creation date: 2010-03-31T04:51:11Z,,A processual entity whose completion is hypothesized (by a healthcare provider) to alleviate the signs and symptoms associated with a disorder,Albert Goldfain,http://code.google.com/p/ogms/issues/detail?id=35,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000090,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000094,acute disease course,,a disease course with a rapid onset but typical unfolding of signs and symptoms after this rapid onset.,false,,,http://purl.obolibrary.org/obo/OGMS_0000063,,,,,,,,creation date: 2010-07-19T11:57:44Z,,a disease course with a rapid onset but typical unfolding of signs and symptoms after this rapid onset.,Albert Goldfain,http://code.google.com/p/ogms/wiki/Meeting_notes_20100513,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000094,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000095,inflammation process,,A process which is a response by an organism's tissues that is generally identified by swelling or localized pain,false,,,http://purl.obolibrary.org/obo/BFO_0000015,,,,,,,,creation date: 2010-07-19T11:57:44Z,,A process which is a response by an organism's tissues that is generally identified by swelling or localized pain,Albert Goldfain,http://code.google.com/p/ogms/wiki/Meeting_notes_20100513,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000095,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000091,convalescence,,A processual entity during which a patient participating in a disease course gradually returns to participating in a canonical life course. ,false,,,http://purl.obolibrary.org/obo/BFO_0000015,,,,,,,,creation date: 2010-03-31T04:51:11Z,,A processual entity during which a patient participating in a disease course gradually returns to participating in a canonical life course. ,Albert Goldfain,http://code.google.com/p/ogms/issues/detail?id=35,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000091,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000092,life course,,A processual entity which has as parts all the processes in which a given organism is participant.,false,,,http://purl.obolibrary.org/obo/BFO_0000015,,,,,,,,creation date: 2010-03-31T04:51:11Z,,A processual entity which has as parts all the processes in which a given organism is participant.,Albert Goldfain,http://code.google.com/p/ogms/issues/detail?id=38,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000092,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000096,health care process,,"A social process that has at least one human participant and that includes as parts the treatment, diagnosis, or prevention of disease or injury--or the following of instructions of another human for treatment, diagnosis, or prevention--of a participant in the process",false,,,http://purl.obolibrary.org/obo/BFO_0000015,,,,,,,,creation date: 2011-02-21T09:57:44Z,,"A social process that has at least one human participant and that includes as parts the treatment, diagnosis, or prevention of disease or injury--or the following of instructions of another human for treatment, diagnosis, or prevention--of a participant in the process",Albert Goldfain,http://groups.google.com/group/ogms-discuss/browse_thread/thread/a2dbc2ed1dff99d6,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000096,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000098,hospitalization,,TODO,false,,,http://purl.obolibrary.org/obo/OGMS_0000097,,,,,,,,creation date: 2011-02-21T09:57:44Z,,TODO,Albert Goldfain,http://groups.google.com/group/ogms-discuss/browse_thread/thread/a2dbc2ed1dff99d6,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000098,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000099,outpatient encounter,,TODO,false,,,http://purl.obolibrary.org/obo/OGMS_0000097,,,,,,,,creation date: 2011-02-21T09:57:44Z,,TODO,Albert Goldfain,http://groups.google.com/group/ogms-discuss/browse_thread/thread/a2dbc2ed1dff99d6,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000099,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000097,health care encounter,,A temporally-connected health care process that has as participants an organization or person realizing the health care provider role and a person realizing the patient role.  The health care provider role and patient are realized during the health care encounter,false,,,http://purl.obolibrary.org/obo/OGMS_0000096,,,,,,,,creation date: 2011-02-21T09:57:44Z,,A temporally-connected health care process that has as participants an organization or person realizing the health care provider role and a person realizing the patient role.  The health care provider role and patient are realized during the health care encounter,Albert Goldfain,http://groups.google.com/group/ogms-discuss/browse_thread/thread/a2dbc2ed1dff99d6,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000097,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000093,prognosis,,A hypothesis about some future part of a disease course.,false,,,http://purl.obolibrary.org/obo/IAO_0000027,,,,,,,,creation date: 2010-03-31T12:42:23Z,,A hypothesis about some future part of a disease course.,Albert Goldfain,http://code.google.com/p/ogms/issues/detail?id=35,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000093,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_260507000,access,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_410662002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_308910008,reference documentation,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_362981000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_308910008,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_272126005,order values,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_272103003,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_424876005,surgical approach,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_410662002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_281586009,special atomic mapping value,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_362981000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/BFO_0000028,three-dimensional spatial region,,,false,,,http://purl.obolibrary.org/obo/BFO_0000006,,,ThreeDimensionalSpatialRegion,3d-s-region,,,,,,,,,,,,,,,,,,A three-dimensional spatial region is a spatial region that is of three dimensions. (axiom label in BFO2 Reference: [040-001]),"a sphere-shaped region of space,|a cube-shaped region of space",,,,,,(forall (x) (if (ThreeDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [040-001] ,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000028,,,,http://purl.obolibrary.org/obo/bfo.owl,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_370134009,time aspect,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_410662002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_419385000,use,,,false,,,https://bioportal.bioontology.org/ontologies/SCTO#SCTO_419988009,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_419385000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_47429007,associated with,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_410662002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_261665006,unknown,,,false,,,https://bioportal.bioontology.org/ontologies/SCTO#SCTO_410514004,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_261665006,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_363700003,direct morphology,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_405816004,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_363555003,intention value,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_362981000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_363555003,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_424244007,using energy,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_410662002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_51440002,right and left,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_24028007,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/BFO_0000006,spatial region,,,false,,,http://purl.obolibrary.org/obo/BFO_0000141,,,SpatialRegion,s-region,,,,,,,,,,,,,,,,"Spatial region doesn't have a closure axiom because the subclasses don't exhaust all possibilites. An example would be the union of a spatial point and a spatial line that doesn't overlap the point, or two spatial lines that intersect at a single point. In both cases the resultant spatial region is neither 0-dimensional, 1-dimensional, 2-dimensional, or 3-dimensional.|BFO 2 Reference: Spatial regions do not participate in processes.",,A spatial region is a continuant entity that is a continuant_part_of spaceR as defined relative to some frame R. (axiom label in BFO2 Reference: [035-001]),,,,,,,(forall (x y t) (if (and (SpatialRegion x) (continuantPartOfAt y x t)) (SpatialRegion y))) // axiom label in BFO2 CLIF: [036-001] |(forall (x) (if (SpatialRegion x) (Continuant x))) // axiom label in BFO2 CLIF: [035-001] ,All continuant parts of spatial regions are spatial regions. (axiom label in BFO2 Reference: [036-001]),,,,,,,,,,,,,,,,,,,,,,,BFO:0000006,,,,http://purl.obolibrary.org/obo/bfo.owl,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_363703001,has intent,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_410662002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/BFO_0000140,continuant fiat boundary,,"b is a continuant fiat boundary = Def. b is an immaterial entity that is of zero, one or two dimensions and does not include a spatial region as part. (axiom label in BFO2 Reference: [029-001])",false,,,http://purl.obolibrary.org/obo/BFO_0000141,,,ContinuantFiatBoundary,cf-boundary,,,,,,"b is a continuant fiat boundary = Def. b is an immaterial entity that is of zero, one or two dimensions and does not include a spatial region as part. (axiom label in BFO2 Reference: [029-001])",,,,,,,,,,"BFO 2 Reference: In BFO 1.1 the assumption was made that the external surface of a material entity such as a cell could be treated as if it were a boundary in the mathematical sense. The new document propounds the view that when we talk about external surfaces of material objects in this way then we are talking about something fiat. To be dealt with in a future version: fiat boundaries at different levels of granularity.More generally, the focus in discussion of boundaries in BFO 2.0 is now on fiat boundaries, which means: boundaries for which there is no assumption that they coincide with physical discontinuities. The ontology of boundaries becomes more closely allied with the ontology of regions.|BFO 2 Reference: a continuant fiat boundary is a boundary of some material entity (for example: the plane separating the Northern and Southern hemispheres; the North Pole), or it is a boundary of some immaterial entity (for example of some portion of airspace). Three basic kinds of continuant fiat boundary can be distinguished (together with various combination kinds [29|Continuant fiat boundary doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the mereological sum of two-dimensional continuant fiat boundary and a one dimensional continuant fiat boundary that doesn't overlap it. The situation is analogous to temporal and spatial regions.",,,,,,,,,(iff (ContinuantFiatBoundary a) (and (ImmaterialEntity a) (exists (b) (and (or (ZeroDimensionalSpatialRegion b) (OneDimensionalSpatialRegion b) (TwoDimensionalSpatialRegion b)) (forall (t) (locatedInAt a b t)))) (not (exists (c t) (and (SpatialRegion c) (continuantPartOfAt c a t)))))) // axiom label in BFO2 CLIF: [029-001] ,Every continuant fiat boundary is located at some spatial region at every time at which it exists,,,,,,,,,,,,,,,,,,,,,,,BFO:0000140,,,,http://purl.obolibrary.org/obo/bfo.owl,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000024,sign,,"A quality of a patient, a material entity that is part of a patient, or a processual entity that a patient participates in, any one of which is observed in a physical examination and is deemed by the clinician to be of clinical significance.",false,,,http://purl.obolibrary.org/obo/BFO_0000001,,,,,,,,creation date: 2010-11-18T11:14:36Z,,"A quality of a patient, a material entity that is part of a patient, or a processual entity that a patient participates in, any one of which is observed in a physical examination and is deemed by the clinician to be of clinical significance.",Albert Goldfain,http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf,,,,,,,,note: defined class,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000024,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000025,clinical manifestation of a disease,,A manifestation of a disease that is detectable in a clinical history taking or physical examination.,false,,,http://purl.obolibrary.org/obo/OGMS_0000022,,,,,,,,creation date: 2009-06-23T11:15:43Z,,A manifestation of a disease that is detectable in a clinical history taking or physical examination.,Albert Goldfain,http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000025,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000026,preclinical manifestation of a disease,,"A manifestation of a disease that exists prior to the time at which it would be detected in a clinical history taking or physical examination, if the patient were to present to a clinician. A realization of a disease that exists prior to its becoming detectable in a clinical history taking or physical examination.",false,,,http://purl.obolibrary.org/obo/OGMS_0000022,,,,,,,,creation date: 2009-06-23T11:16:50Z,,"A manifestation of a disease that exists prior to the time at which it would be detected in a clinical history taking or physical examination, if the patient were to present to a clinician. A realization of a disease that exists prior to its becoming detectable in a clinical history taking or physical examination.",Albert Goldfain,http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000026,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000023,phenotype,,A (combination of) quality(ies) of an organism determined by the interaction of its genetic make-up and environment that differentiates specific instances of a species from other instances of the same species.,false,,,http://purl.obolibrary.org/obo/BFO_0000019,,,,,,,,creation date: 2010-07-19T11:13:49Z,,A (combination of) quality(ies) of an organism determined by the interaction of its genetic make-up and environment that differentiates specific instances of a species from other instances of the same species.,Albert Goldfain,http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000023,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000022,manifestation of a disease,,A quality of a patient that is (a) a deviation from clinical normality that exists in virtue of the realization of a disease and (b) is observable.,false,,,http://purl.obolibrary.org/obo/BFO_0000019,,,,,,,,creation date: 2009-06-23T11:12:33Z,,A quality of a patient that is (a) a deviation from clinical normality that exists in virtue of the realization of a disease and (b) is observable.,Albert Goldfain,http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000022,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000027,clinical phenotype,,A clinically abnormal phenotype.,false,,,http://purl.obolibrary.org/obo/OGMS_0000023,,,,,,,,creation date: 2009-06-23T11:18:05Z,,A clinically abnormal phenotype.,Albert Goldfain,http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000027,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000020,symptom,,"A quality of a patient that is observed by the patient or a processual entity experienced by the patient, either of which is hypothesized by the patient to be a realization of a disease.",false,,,http://purl.obolibrary.org/obo/BFO_0000001,,,,,,,,creation date: 2010-11-18T11:02:10Z,,"A quality of a patient that is observed by the patient or a processual entity experienced by the patient, either of which is hypothesized by the patient to be a realization of a disease.",,http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf,,,,,,,,note: defined class,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000020,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000029,vital sign,,A physical sign in which a non-zero value is standardly considered to be an indication that the organism is alive.,false,,,http://purl.obolibrary.org/obo/OGMS_0000024,,,,,,,,creation date: 2009-06-23T11:19:17Z,,A physical sign in which a non-zero value is standardly considered to be an indication that the organism is alive.,Albert Goldfain,http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000029,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000028,disease phenotype,,A clinically abnormal phenotype that is characteristic of a single disease.,false,,,http://purl.obolibrary.org/obo/OGMS_0000023,,,,,,,,creation date: 2009-06-23T11:18:39Z,,A clinically abnormal phenotype that is characteristic of a single disease.,Albert Goldfain,http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000028,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/BFO_0000147,zero-dimensional continuant fiat boundary,,,false,,,http://purl.obolibrary.org/obo/BFO_0000140,,,ZeroDimensionalContinuantFiatBoundary,0d-cf-boundary,,,,,,,,,,,,,,,,"zero dimension continuant fiat boundaries are not spatial points. Considering the example 'the quadripoint where the boundaries of Colorado, Utah, New Mexico, and Arizona meet' : There are many frames in which that point is zooming through many points in space. Whereas, no matter what the frame, the quadripoint is always in the same relation to the boundaries of Colorado, Utah, New Mexico, and Arizona.",,a zero-dimensional continuant fiat boundary is a fiat point whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [031-001]),"the quadripoint where the boundaries of Colorado, Utah, New Mexico, and Arizona meet|the geographic North Pole|the point of origin of some spatial coordinate system.",,,,,,(iff (ZeroDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (ZeroDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [031-001] ,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000147,,,,http://purl.obolibrary.org/obo/bfo.owl,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/BFO_0000023,role,,,false,,,http://purl.obolibrary.org/obo/BFO_0000017,,,Role,role,,,,,,,,,,,,,,,,"BFO 2 Reference: One major family of examples of non-rigid universals involves roles, and ontologies developed for corresponding administrative purposes may consist entirely of representatives of entities of this sort. Thus ‘professor’, defined as follows,b instance_of professor at t =Def. there is some c, c instance_of professor role & c inheres_in b at t.denotes a non-rigid universal and so also do ‘nurse’, ‘student’, ‘colonel’, ‘taxpayer’, and so forth. (These terms are all, in the jargon of philosophy, phase sortals.) By using role terms in definitions, we can create a BFO conformant treatment of such entities drawing on the fact that, while an instance of professor may be simultaneously an instance of trade union member, no instance of the type professor role is also (at any time) an instance of the type trade union member role (any more than any instance of the type color is at any time an instance of the type length).If an ontology of employment positions should be defined in terms of roles following the above pattern, this enables the ontology to do justice to the fact that individuals instantiate the corresponding universals –  professor, sergeant, nurse – only during certain phases in their lives.",,"b is a role means: b is a realizable entity & b exists because there is some single bearer that is in some special physical, social, or institutional set of circumstances in which this bearer does not have to be& b is not such that, if it ceases to exist, then the physical make-up of the bearer is thereby changed. (axiom label in BFO2 Reference: [061-001])","the role of a stone in marking a property boundary|the priest role|the student role|the role of subject in a clinical trial|the role of a boundary to demarcate two neighboring administrative territories|John’s role of husband to Mary is dependent on Mary’s role of wife to John, and both are dependent on the object aggregate comprising John and Mary as member parts joined together through the relational quality of being married.|the role of a building in serving as a military target",,,,,,(forall (x) (if (Role x) (RealizableEntity x))) // axiom label in BFO2 CLIF: [061-001] ,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000023,,,,http://purl.obolibrary.org/obo/bfo.owl,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_288524001,courses,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_303102005,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_00000002,SNOMED CT Relationship,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_00000000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_00000000,SNOMED CT Component,,,false,,,http://purl.obolibrary.org/obo/IAO_0000030,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_00000001,SNOMED CT Description,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_00000000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_272424004,relative sites,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_309825002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_282032007,periods of life,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_307142001,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_123037004,body structure,,Body structure concepts include normal as well as abnormal anatomical structures. Normal anatomical structures can be used to specify the body site involved by a disease or procedure.,false,,,http://purl.obolibrary.org/obo/BFO_0000024,,,,,,,,,,Body structure concepts include normal as well as abnormal anatomical structures. Normal anatomical structures can be used to specify the body site involved by a disease or procedure.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_276214006,findings category type,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_362981000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_276214006,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_419652001,take,,,false,,,https://bioportal.bioontology.org/ontologies/SCTO#SCTO_419988009,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_419652001,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_370131001,recipient category,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_410662002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_260870009,priority,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_410662002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://www.geneontology.org/formats/oboInOwl#Definition,Definition,,,false,,,http://purl.obolibrary.org/obo/IAO_0000102,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,oboInOwl:Definition,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#DTO:0001944,laboratory procedure,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_71388002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#DTO:0001943,evaluation procedure,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_71388002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_425391005,using access device,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_424226004,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/BFO_0000009,two-dimensional spatial region,,,false,,,http://purl.obolibrary.org/obo/BFO_0000006,,,TwoDimensionalSpatialRegion,2d-s-region,,,,,,,,,,,,,,,,,,A two-dimensional spatial region is a spatial region that is of two dimensions. (axiom label in BFO2 Reference: [039-001]),an infinitely thin plane in space.|the surface of a sphere-shaped part of space,,,,,,(forall (x) (if (TwoDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [039-001] ,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000009,,,,http://purl.obolibrary.org/obo/bfo.owl,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_129300006,puncture - action,,,false,,,https://bioportal.bioontology.org/ontologies/SCTO#SCTO_129264002|http://purl.obolibrary.org/obo/ogms.owl#SCTO_129264002_2,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_129300006,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_263502005,clinical course,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_410662002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_394731006,problem status,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_362981000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_394731006,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000030,predisposition to disease of type X,,A disposition in an organism that constitutes an increased risk of the organism's subsequently developing the disease X.,false,,,http://purl.obolibrary.org/obo/BFO_0000016,,,,,,,,creation date: 2009-06-23T11:20:25Z,,A disposition in an organism that constitutes an increased risk of the organism's subsequently developing the disease X.,Albert Goldfain,http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000030,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000033,genetic predisposition to disease of type X,,A predisposition to disease of type X whose physical basis is a constitutional abnormality in an organism's genome. This abnormality is the physical basis for the increased risk of acquiring the disease X.,false,,,http://purl.obolibrary.org/obo/OGMS_0000030,,,,,,,,creation date: 2009-06-23T11:23:07Z,,A predisposition to disease of type X whose physical basis is a constitutional abnormality in an organism's genome. This abnormality is the physical basis for the increased risk of acquiring the disease X.,Albert Goldfain,http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000033,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000032,homeostasis,,,false,,,http://purl.obolibrary.org/obo/BFO_0000016,,,,,,,,creation date: 2009-06-23T11:22:01Z,,,Albert Goldfain,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000032,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000034,acquired genetic disease,,A disease whose physical basis is an acquired genetic disorder.,false,,,http://purl.obolibrary.org/obo/OGMS_0000031,,,,,,,,creation date: 2009-06-23T11:24:05Z,,A disease whose physical basis is an acquired genetic disorder.,Albert Goldfain,http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000034,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000031,disease,,A disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.,false,,,http://purl.obolibrary.org/obo/BFO_0000016|http://purl.obolibrary.org/obo/OGMS_0000014,,,,,,,,creation date: 2009-06-23T11:21:20Z,,A disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.,Albert Goldfain,http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000031,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000039,configuration,,A quality which is an spatial arrangement or distribution of a(n) independent continuant(s) across a Three Dimensional Region.,false,,,http://purl.obolibrary.org/obo/BFO_0000019,,,,,,,,creation date: 2009-06-23T11:36:24Z,,A quality which is an spatial arrangement or distribution of a(n) independent continuant(s) across a Three Dimensional Region.,Albert Goldfain,http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000039,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000035,constitutional genetic disease,,A disease whose physical basis is a constitutional genetic disorder.,false,,,http://purl.obolibrary.org/obo/OGMS_0000031,,,,,,,,creation date: 2009-06-23T11:24:59Z,,A disease whose physical basis is a constitutional genetic disorder.,Albert Goldfain,http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000035,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000038,normal homeostasis,,Homeostasis of a type that is not clinically abnormal.,false,,,http://purl.obolibrary.org/obo/OGMS_0000032,,,,,,,,creation date: 2009-06-23T11:27:28Z,,Homeostasis of a type that is not clinically abnormal.,Albert Goldfain,http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000038,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000037,abnormal homeostasis,,Homeostasis that is clinically abnormal for an organism of a given type and age in a given environment.,false,,,http://purl.obolibrary.org/obo/OGMS_0000032,,,,,,,,creation date: 2009-06-23T11:26:44Z,,Homeostasis that is clinically abnormal for an organism of a given type and age in a given environment.,Albert Goldfain,http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000037,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_363675004,intents,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_277367001,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_419891008,record artifact,,A record artifact is an entity that is created by a person or persons for the purpose of providing other people with information about events or states of affairs.,false,,,http://purl.obolibrary.org/obo/BFO_0000031,,,,,,,,,,A record artifact is an entity that is created by a person or persons for the purpose of providing other people with information about events or states of affairs.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_118956008,morphologically altered structure,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_123037004,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_123038009,specimen,,The specimen hierarchy contains concepts representing entities that are obtained (usually from a patient) for examination or analysis.,false,,,http://purl.obolibrary.org/obo/BFO_0000030,,,,,,,,,,The specimen hierarchy contains concepts representing entities that are obtained (usually from a patient) for examination or analysis.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000027,data item,,,false,,,http://purl.obolibrary.org/obo/IAO_0000030,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000027,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_280115004,acquired body structure,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_442083009,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_297289008,world language,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_362981000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_297289008,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_129407005,grafting - action,,,false,,,https://bioportal.bioontology.org/ontologies/SCTO#SCTO_425362007,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_129407005,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/BFO_0000008,temporal region,,,false,,,http://purl.obolibrary.org/obo/BFO_0000003,,,TemporalRegion,t-region,,,,,,,,,,,,,,,,Temporal region doesn't have a closure axiom because the subclasses don't exhaust all possibilites. An example would be the mereological sum of a temporal instant and a temporal interval that doesn't overlap the instant. In this case the resultant temporal region is neither 0-dimensional nor 1-dimensional,,A temporal region is an occurrent entity that is part of time as defined relative to some reference frame. (axiom label in BFO2 Reference: [100-001]),,,,,,,(forall (r) (if (TemporalRegion r) (occupiesTemporalRegion r r))) // axiom label in BFO2 CLIF: [119-002] |(forall (x y) (if (and (TemporalRegion x) (occurrentPartOf y x)) (TemporalRegion y))) // axiom label in BFO2 CLIF: [101-001] |(forall (x) (if (TemporalRegion x) (Occurrent x))) // axiom label in BFO2 CLIF: [100-001] ,Every temporal region t is such that t occupies_temporal_region t. (axiom label in BFO2 Reference: [119-002])|All parts of temporal regions are temporal regions. (axiom label in BFO2 Reference: [101-001]),,,,,,,,,,,,,,,,,,,,,,,BFO:0000008,,,,http://purl.obolibrary.org/obo/bfo.owl,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_106235004,modifier related to basic science,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_362981000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_106235004,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_307142001,temporal periods,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_303102005,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_264752007,grading value,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_272396007,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_419066007,finding informer,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_410662002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_106229004,qualifier for type of diagnosis,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_362981000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_106229004,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://www.geneontology.org/formats/oboInOwl#Subset,Subset,,,false,,,http://purl.obolibrary.org/obo/IAO_0000102,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,oboInOwl:Subset,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_370135005,pathological process,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_410662002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_129380009,anchoring - action,,,false,,,https://bioportal.bioontology.org/ontologies/SCTO#SCTO_129371009,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_129380009,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_257958009,part of multistage procedure,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_272127001,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_66459002,unilateral,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_272424004,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_78621006,physical force,,The concepts in the physical force hierarchy are directed primarily at representing physical forces that can play a role as mechanisms of injury.,false,,,http://purl.obolibrary.org/obo/BFO_0000020,,,,,,,,,,The concepts in the physical force hierarchy are directed primarily at representing physical forces that can play a role as mechanisms of injury.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_246514001,unit,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_410662002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_272141005,severity,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_258349007,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/BFO_0000024,fiat object part,,,false,,,http://purl.obolibrary.org/obo/BFO_0000040,,,FiatObjectPart,fiat-object-part,,,,,,,,,,,,,,,,BFO 2 Reference: Most examples of fiat object parts are associated with theoretically drawn divisions,,"b is a fiat object part = Def. b is a material entity which is such that for all times t, if b exists at t then there is some object c such that b proper continuant_part of  c at t and c is demarcated from the remainder of c by a two-dimensional continuant fiat boundary. (axiom label in BFO2 Reference: [027-004])","the upper and lower lobes of the left lung|the dorsal and ventral surfaces of the body|the division of the brain into regions|or with divisions drawn by cognitive subjects for practical reasons, such as the division of a cake (before slicing) into (what will become) slices (and thus member parts of an object aggregate). However, this does not mean that fiat object parts are dependent for their existence on divisions or delineations effected by cognitive subjects. If, for example, it is correct to conceive geological layers of the Earth as fiat object parts of the Earth, then even though these layers were first delineated in recent times, still existed long before such delineation and what holds of these layers (for example that the oldest layers are also the lowest layers) did not begin to hold because of our acts of delineation.Treatment of material entity in BFOExamples viewed by some as problematic cases for the trichotomy of fiat object part, object, and object aggregate include: a mussel on (and attached to) a rock, a slime mold, a pizza, a cloud, a galaxy, a railway train with engine and multiple carriages, a clonal stand of quaking aspen, a bacterial community (biofilm), a broken femur. Note that, as Aristotle already clearly recognized, such problematic cases – which lie at or near the penumbra of instances defined by the categories in question – need not invalidate these categories. The existence of grey objects does not prove that there are not objects which are black and objects which are white; the existence of mules does not prove that there are not objects which are donkeys and objects which are horses. It does, however, show that the examples in question need to be addressed carefully in order to show how they can be fitted into the proposed scheme, for example by recognizing additional subdivisions [29|the division of the planet into hemispheres|the Western hemisphere of the Earth|the FMA:regional parts of an intact human body.",,,,,,(forall (x) (if (FiatObjectPart x) (and (MaterialEntity x) (forall (t) (if (existsAt x t) (exists (y) (and (Object y) (properContinuantPartOfAt x y t)))))))) // axiom label in BFO2 CLIF: [027-004] ,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000024,,,,http://purl.obolibrary.org/obo/bfo.owl,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/BFO_0000148,zero-dimensional temporal region,,,false,,,http://purl.obolibrary.org/obo/BFO_0000008,temporal instant.,,ZeroDimensionalTemporalRegion,0d-t-region,,,,,,,,,,,,,,,,,,A zero-dimensional temporal region is a temporal region that is without extent. (axiom label in BFO2 Reference: [102-001]),the moment at which a finger is detached in an industrial accident|the moment at which a child is born|the moment of death.|a temporal region that is occupied by a process boundary|right now,,,,,,(forall (x) (if (ZeroDimensionalTemporalRegion x) (TemporalRegion x))) // axiom label in BFO2 CLIF: [102-001] ,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000148,,,,http://purl.obolibrary.org/obo/bfo.owl,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_129264002_2,action,,,false,,,http://purl.obolibrary.org/obo/BFO_0000015|http://purl.obolibrary.org/obo/ogms.owl#SCTO_362981000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_288532009,context value for action,,,false,,,https://bioportal.bioontology.org/ontologies/SCTO#SCTO_288529006,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_288532009,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_127489000,has active ingredient,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_410662002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_288526004,episodicities,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_303102005,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_272099008,descriptor,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_362981000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_425362007,surgical insertion - action,,,false,,,https://bioportal.bioontology.org/ontologies/SCTO#SCTO_257867005,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_425362007,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_410514004,finding context value,,,false,,,https://bioportal.bioontology.org/ontologies/SCTO#SCTO_288529006,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_410514004,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_363714003,interpret,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_410662002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/BFO_0000016,disposition,,,false,,,http://purl.obolibrary.org/obo/BFO_0000017,,,Disposition,disposition,,,,,,,,,,,,,,,,BFO 2 Reference: Dispositions exist along a strength continuum. Weaker forms of disposition are realized in only a fraction of triggering cases. These forms occur in a significant number of cases of a similar type.,,"b is a disposition means: b is a realizable entity & b’s bearer is some material entity & b is such that if it ceases to exist, then its bearer is physically changed, & b’s realization occurs when and because this bearer is in some special physical circumstances, & this realization occurs in virtue of the bearer’s physical make-up. (axiom label in BFO2 Reference: [062-002])",an atom of element X has the disposition to decay to an atom of element Y|children are innately disposed to categorize objects in certain ways.|certain people have a predisposition to colon cancer|the cell wall is disposed to filter chemicals in endocytosis and exocytosis,,,,,,(forall (x t) (if (and (RealizableEntity x) (existsAt x t)) (exists (y) (and (MaterialEntity y) (specificallyDepends x y t))))) // axiom label in BFO2 CLIF: [063-002] |(forall (x) (if (Disposition x) (and (RealizableEntity x) (exists (y) (and (MaterialEntity y) (bearerOfAt x y t)))))) // axiom label in BFO2 CLIF: [062-002] ,"If b is a realizable entity then for all t at which b exists, b s-depends_on some material entity at t. (axiom label in BFO2 Reference: [063-002])",,,,,,,,,,,,,,,,,,,,,,,BFO:0000016,,,,http://purl.obolibrary.org/obo/bfo.owl,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_410536001,contraindicated,,,false,,,https://bioportal.bioontology.org/ontologies/SCTO#SCTO_288532009,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_410536001,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_360038009,gluing - action,,,false,,,https://bioportal.bioontology.org/ontologies/SCTO#SCTO_129371009,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_360038009,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/BFO_0000017,realizable entity,,,false,,,http://purl.obolibrary.org/obo/BFO_0000020,,,RealizableEntity,realizable,,,,,,,,,,,,,,,,,,To say that b is a realizable entity is to say that b is a specifically dependent continuant that inheres in some independent continuant which is not a spatial region and is of a type instances of which are realized in processes of a correlated type. (axiom label in BFO2 Reference: [058-002]),the disposition of your blood to coagulate|the role of being a doctor|the role of this boundary to delineate where Utah and Colorado meet|the disposition of this piece of metal to conduct electricity.|the function of your reproductive organs,,,,,,(forall (x t) (if (RealizableEntity x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (bearerOfAt y x t))))) // axiom label in BFO2 CLIF: [060-002] |(forall (x) (if (RealizableEntity x) (and (SpecificallyDependentContinuant x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (inheresIn x y)))))) // axiom label in BFO2 CLIF: [058-002] ,All realizable dependent continuants have independent continuants that are not spatial regions as their bearers. (axiom label in BFO2 Reference: [060-002]),,,,,,,,,,,,,,,,,,,,,,,BFO:0000017,,,,http://purl.obolibrary.org/obo/bfo.owl,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_385660001,not done,,,false,,,https://bioportal.bioontology.org/ontologies/SCTO#SCTO_288532009,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_385660001,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_410510008,temporal context value,,,false,,,https://bioportal.bioontology.org/ontologies/SCTO#SCTO_288529006,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_410510008,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_360032005,flap reconstruction - action,,,false,,,https://bioportal.bioontology.org/ontologies/SCTO#SCTO_129347002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_360032005,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_129347002,surgical transfer - action,,,false,,,https://bioportal.bioontology.org/ontologies/SCTO#SCTO_410820007,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_129347002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_373873005,pharmaceutical / biologic product,,The pharmaceutical / biologic product hierarchy is separate from the Substance hierarchy.This hierarchy was introduced as a top-level hierarchy in order to clearly distinguish drug products (products) from their chemical constituents (substances).,false,,,http://purl.obolibrary.org/obo/BFO_0000030,,,,,,,,,,The pharmaceutical / biologic product hierarchy is separate from the Substance hierarchy.This hierarchy was introduced as a top-level hierarchy in order to clearly distinguish drug products (products) from their chemical constituents (substances).,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_363709002,indirect morphology,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_405816004,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_410675002,route of administration,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_410662002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_129379006,fusion - action,,,false,,,https://bioportal.bioontology.org/ontologies/SCTO#SCTO_129371009,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_129379006,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/BFO_0000029,site,,,false,,,http://purl.obolibrary.org/obo/BFO_0000141,,,Site,site,,,,,,,,,,,,,,,,,,b is a site means: b is a three-dimensional immaterial entity that is (partially or wholly) bounded by a material entity or it is a three-dimensional immaterial part thereof. (axiom label in BFO2 Reference: [034-002]),the interior of your refrigerator|the hold of a ship|a rabbit hole|your left nostril (a fiat part – the opening – of your left nasal cavity)|the interior of your office|the Piazza San Marco|the interior of the trunk of your car|the Grand Canyon|a hole in the interior of a portion of cheese|an air traffic control region defined in the airspace above an airport|Manhattan Canyon)|the interior of your bedroom|the lumen of your gut|the interior of a kangaroo pouch|the cockpit of an aircraft,,,,,,(forall (x) (if (Site x) (ImmaterialEntity x))) // axiom label in BFO2 CLIF: [034-002] ,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000029,,,,http://purl.obolibrary.org/obo/bfo.owl,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_49062001,device,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_260787004,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_272379006,event,,The event hierarchy includes concepts that represent occurrences (excluding procedures and interventions).,false,,,http://purl.obolibrary.org/obo/BFO_0000035,,,,,,,,,,The event hierarchy includes concepts that represent occurrences (excluding procedures and interventions).,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_422133006,afternoon,,,false,,,https://bioportal.bioontology.org/ontologies/SCTO#SCTO_7389001|http://purl.obolibrary.org/obo/BFO_0000038,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_422133006,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/BFO_0000182,history,,,false,,,http://purl.obolibrary.org/obo/BFO_0000015,,,History,history,,,,,,,,,,,,,,,,,,"A history is a process that is the sum of the totality of processes taking place in the spatiotemporal region occupied by a material entity or site, including processes on the surface of the entity or within the cavities to which it serves as host. (axiom label in BFO2 Reference: [138-001])",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000182,,,,http://purl.obolibrary.org/obo/bfo.owl,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_418775008,finding method,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_410662002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_103379005,procedural approach,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_309825002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/BFO_0000018,zero-dimensional spatial region,,,false,,,http://purl.obolibrary.org/obo/BFO_0000006,,,ZeroDimensionalSpatialRegion,0d-s-region,,,,,,,,,,,,,,,,,,A zero-dimensional spatial region is a point in space. (axiom label in BFO2 Reference: [037-001]),,,,,,,(forall (x) (if (ZeroDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [037-001] ,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000018,,,,http://purl.obolibrary.org/obo/bfo.owl,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_309795001,surgical access values,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_309825002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_419988009,action of drug administration,,,false,,,https://bioportal.bioontology.org/ontologies/SCTO#SCTO_129264002|http://purl.obolibrary.org/obo/ogms.owl#SCTO_129264002_2,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_419988009,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_360220002,mapping - action,,,false,,,https://bioportal.bioontology.org/ontologies/SCTO#SCTO_129264002|http://purl.obolibrary.org/obo/ogms.owl#SCTO_129264002_2,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_360220002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_115268005,modifier of Analyte and Substance,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_362981000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_115268005,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000102,data about an ontology part,,"data about an ontology part is a data item about a part of an ontology, for example a term",false,,,http://purl.obolibrary.org/obo/IAO_0000027,,,,,,,,,,"data about an ontology part is a data item about a part of an ontology, for example a term",Person:Alan Ruttenberg,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000102,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_410662002,concept model attribute,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_246061005,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_288529006,context value,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_362981000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_288529006,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_413529001,anatomic reference point,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_362981000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_413529001,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_254291000,stage and scale,,"This hierarchy contains such sub-hierarchies as | Assessment scales (assessment scale) |, which names assessment scales; and | Tumor staging (tumor staging) | , which names tumour staging systems.",false,,,http://purl.obolibrary.org/obo/BFO_0000031,,,,,,,,,,"This hierarchy contains such sub-hierarchies as | Assessment scales (assessment scale) |, which names assessment scales; and | Tumor staging (tumor staging) | , which names tumour staging systems.",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_7771000,left,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_182353008,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/BFO_0000003,occurrent,,,false,,,http://purl.obolibrary.org/obo/BFO_0000001,,,Occurrent,occurrent,,,,,,,,,,,,,,,,"Simons uses different terminology for relations of occurrents to regions: Denote the spatio-temporal location of a given occurrent e by 'spn[e]' and call this region its span. We may say an occurrent is at its span, in any larger region, and covers any smaller region. Now suppose we have fixed a frame of reference so that we can speak not merely of spatio-temporal but also of spatial regions (places) and temporal regions (times). The spread of an occurrent, (relative to a frame of reference) is the space it exactly occupies, and its spell is likewise the time it exactly occupies. We write 'spr[e]' and `spl[e]' respectively for the spread and spell of e, omitting mention of the frame.|Occurrent doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the sum of a process and the process boundary of another process.|BFO 2 Reference: every occurrent that is not a temporal or spatiotemporal region is s-dependent on some independent continuant that is not a spatial region|BFO 2 Reference: s-dependence obtains between every process and its participants in the sense that, as a matter of necessity, this process could not have existed unless these or those participants existed also. A process may have a succession of participants at different phases of its unfolding. Thus there may be different players on the field at different times during the course of a football game; but the process which is the entire game s-depends_on all of these players nonetheless. Some temporal parts of this process will s-depend_on on only some of the players.",,An occurrent is an entity that unfolds itself in time or it is the instantaneous boundary of such an entity (for example a beginning or an ending) or it is a temporal or spatiotemporal region which such an entity occupies_temporal_region or occupies_spatiotemporal_region. (axiom label in BFO2 Reference: [077-002]),,,,,,,(forall (x) (if (Occurrent x) (exists (r) (and (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion x r))))) // axiom label in BFO2 CLIF: [108-001] |(forall (x) (iff (Occurrent x) (and (Entity x) (exists (y) (temporalPartOf y x))))) // axiom label in BFO2 CLIF: [079-001] ,Every occurrent occupies_spatiotemporal_region some spatiotemporal region. (axiom label in BFO2 Reference: [108-001])|b is an occurrent entity iff b is an entity that has temporal parts. (axiom label in BFO2 Reference: [079-001]),,,,,,,,,,,,,,,,,,,,,,,BFO:0000003,,,,http://purl.obolibrary.org/obo/bfo.owl,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/BFO_0000004,independent continuant,,b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002]),false,,,http://purl.obolibrary.org/obo/BFO_0000002,,,IndependentContinuant,ic,,,,,,b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002]),,,,,,,,,,,,,a leg|an orchestra.|a molecule|an organism|the bottom right portion of a human torso|the interior of your mouth|an atom|a chair|a spatial region|a heart,,,,,,(iff (IndependentContinuant a) (and (Continuant a) (not (exists (b t) (specificallyDependsOnAt a b t))))) // axiom label in BFO2 CLIF: [017-002] |(forall (x t) (if (and (IndependentContinuant x) (existsAt x t)) (exists (y) (and (Entity y) (specificallyDependsOnAt y x t))))) // axiom label in BFO2 CLIF: [018-002] |(forall (x t) (if (IndependentContinuant x) (exists (r) (and (SpatialRegion r) (locatedInAt x r t))))) // axiom label in BFO2 CLIF: [134-001] ,"For any independent continuant b and any time t there is some spatial region r such that b is located_in r at t. (axiom label in BFO2 Reference: [134-001])|For every independent continuant b and time t during the region of time spanned by its life, there are entities which s-depends_on b during t. (axiom label in BFO2 Reference: [018-002])",,,,,,,,,,,,,,,,,,,,,,,BFO:0000004,,,,http://purl.obolibrary.org/obo/bfo.owl,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_105590001,substance,,"The substance hierarchy contains concepts that can be used for recording active chemical constituents of drug products, food and chemical allergens, adverse reactions, toxicity or poisoning information, and physicians and nursing orders.",false,,,http://purl.obolibrary.org/obo/BFO_0000030,,,,,,,,,,"The substance hierarchy contains concepts that can be used for recording active chemical constituents of drug products, food and chemical allergens, adverse reactions, toxicity or poisoning information, and physicians and nursing orders.",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_246513007,revision status,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_410662002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_118170007,specimen source identity,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_410662002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000105,relapse,,A part of a disease course that occurs after an incomplete remission and that is similar to earlier parts of the disease course.,false,,,http://purl.obolibrary.org/obo/BFO_0000015,,,,,,,,,,A part of a disease course that occurs after an incomplete remission and that is similar to earlier parts of the disease course.,Albert Goldfain,http://code.google.com/p/ogms/issues/detail?id=73,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000105,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000103,prophylaxis,,A planned process that has the objective to reduce the risk of acquiring one or more disorders.,false,,,http://purl.obolibrary.org/obo/BFO_0000015,,,,,,,,creation date: 2011-09-20T09:57:44Z,,A planned process that has the objective to reduce the risk of acquiring one or more disorders.,Albert Goldfain,http://groups.google.com/group/ogms-discuss/browse_thread/thread/e42bde79218ee34e,,,,,,,,Whether or not 'prophylaxis' and 'treatment' classes are disjoint is an open question.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000103,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000102,injury,,A disorder that involves some structural damage that is immediately caused by a catastrophic external force.,false,,,http://purl.obolibrary.org/obo/OGMS_0000045,,,,,,,,"creation date: 2011-09-20T09:57:44Z
edited date: 30 SEPT 2015",,A disorder that involves some structural damage that is immediately caused by a catastrophic external force.,"Albert Goldfain
Sagar Jain","http://groups.google.com/group/ogms-discuss/browse_thread/thread/ca0ad373f27774c5

OGMS call adoption- 16 SEPT 2015
https://docs.google.com/document/d/1iiV1-fTS7BUUSzDw3N_Afx42698YWf54-FOTY2NkAxo/edit

",,,,,,,,"At the scale of organism (as opposed to the cellular scale or the population scale), an injury is typically the result of a catastrophic event. Consider the implications of making 'injury' a subtype of 'disorder'.

Note: Adopted subtype of disorder, and injury can occur at the scale of organism down to cellular level.",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000102,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000100,inpatient encounter,,TODO,false,,,http://purl.obolibrary.org/obo/OGMS_0000097,,,,,,,,creation date: 2011-02-21T09:57:44Z,,TODO,Albert Goldfain,http://groups.google.com/group/ogms-discuss/browse_thread/thread/a2dbc2ed1dff99d6,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000100,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000104,diagnostic process,,"An interpretive process that has as input a clinical picture of a given patient and as output an assertion to the effect that the patient has a disease, disorder, or syndrome of a certain type, or none of these.",false,,,http://purl.obolibrary.org/obo/BFO_0000015,,,,,,,,creation date: 2011-09-20T09:57:44Z,,"An interpretive process that has as input a clinical picture of a given patient and as output an assertion to the effect that the patient has a disease, disorder, or syndrome of a certain type, or none of these.",Albert Goldfain,http://groups.google.com/group/ogms-discuss/browse_thread/thread/2a7008f311fac766/e7de486c94dfd82e,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000104,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000106,remission,,A part of a disease course that includes a temporary convalescense.,false,,,http://purl.obolibrary.org/obo/BFO_0000015,,,,,,,,,,A part of a disease course that includes a temporary convalescense.,Albert Goldfain,http://code.google.com/p/ogms/issues/detail?id=73,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000106,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000101,ED encounter,,TODO,false,,,http://purl.obolibrary.org/obo/OGMS_0000097,,,,,,,,creation date: 2011-02-21T09:57:44Z,,TODO,Albert Goldfain,http://groups.google.com/group/ogms-discuss/browse_thread/thread/a2dbc2ed1dff99d6,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000101,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_288531002,finding status value,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_362981000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_288531002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_424361007,using substance,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_410662002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_129371009,fixation - action,,,false,,,https://bioportal.bioontology.org/ontologies/SCTO#SCTO_129284003,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_129371009,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_362981000,qualifier value,,"The qualifier value hierarchy contains some of the concepts used as values for SNOMED CT attributes that are not contained elsewhere in SNOMED CT. Such a code may be used as the value of an attribute in a defining Relationship in precoordinated definitions, and/or as the value of an attribute in a qualifier in a postcoordinated expression.",false,,,http://purl.obolibrary.org/obo/BFO_0000031,,,,,,,,,,"The qualifier value hierarchy contains some of the concepts used as values for SNOMED CT attributes that are not contained elsewhere in SNOMED CT. Such a code may be used as the value of an attribute in a defining Relationship in precoordinated definitions, and/or as the value of an attribute in a qualifier in a postcoordinated expression.",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_182353008,side,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_272424004,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_308489006,pathological process,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_303102005,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000030,information content entity,,An information content entity is an entity that is generically dependent on some artifact and stands in relation of aboutness to some entity,false,,,http://purl.obolibrary.org/obo/BFO_0000031,,,,,,,,,,An information content entity is an entity that is generically dependent on some artifact and stands in relation of aboutness to some entity,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000030,,,,,,,,http://purl.obolibrary.org/obo/iao.owl,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_278444000,scale way,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_362981000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_278444000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_260299005,number,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_362981000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_260299005,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_410820007,surgical transplantation - action,,,false,,,https://bioportal.bioontology.org/ontologies/SCTO#SCTO_129407005,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_410820007,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/BFO_0000034,function,,,false,,,http://purl.obolibrary.org/obo/BFO_0000016,,,Function,function,,,,,,,,,,,,,,,,"BFO 2 Reference: In the past, we have distinguished two varieties of function, artifactual function and biological function. These are not asserted subtypes of BFO:function however, since the same function – for example: to pump, to transport – can exist both in artifacts and in biological entities. The asserted subtypes of function that would be needed in order to yield a separate monoheirarchy are not artifactual function, biological function, etc., but rather transporting function, pumping function, etc.",,"A function is a disposition that exists in virtue of the bearer’s physical make-up and this physical make-up is something the bearer possesses because it came into being, either through evolution (in the case of natural biological entities) or through intentional design (in the case of artifacts), in order to realize processes of a certain sort. (axiom label in BFO2 Reference: [064-001])",the function of a heart pacemaker to regulate the beating of a heart through electricity|the function of a hammer to drive in nails|the function of amylase in saliva to break down starch into sugar,,,,,,(forall (x) (if (Function x) (Disposition x))) // axiom label in BFO2 CLIF: [064-001] ,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000034,,,,http://purl.obolibrary.org/obo/bfo.owl,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_410511007,current or past,,,false,,,https://bioportal.bioontology.org/ontologies/SCTO#SCTO_410510008,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_410511007,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_129348007,Z-plasty - action,,,false,,,https://bioportal.bioontology.org/ontologies/SCTO#SCTO_129347002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_129348007,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_415240008,ratio value,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_362981000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_415240008,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/BFO_0000142,one-dimensional continuant fiat boundary,,,false,,,http://purl.obolibrary.org/obo/BFO_0000140,,,OneDimensionalContinuantFiatBoundary,1d-cf-boundary,,,,,,,,,,,,,,,,,,a one-dimensional continuant fiat boundary is a continuous fiat line whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [032-001]),the line separating the outer surface of the mucosa of the lower lip from the outer surface of the skin of the chin.|all lines of latitude and longitude|The Equator|the median sulcus of your tongue|all geopolitical boundaries,,,,,,(iff (OneDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (OneDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [032-001] ,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000142,,,,http://purl.obolibrary.org/obo/bfo.owl,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/BFO_0000027,object aggregate,,,false,,,http://purl.obolibrary.org/obo/BFO_0000040,,,ObjectAggregate,object-aggregate,,,,,,,,"ISBN:978-3-938793-98-5pp124-158#Thomas Bittner and Barry Smith, 'A Theory of Granular Partitions', in K. Munn and B. Smith (eds.), Applied Ontology: An Introduction, Frankfurt/Lancaster: ontos, 2008, 125-158.",,,,,,,,"An entity a is an object aggregate if and only if there is a mutually exhaustive and pairwise disjoint partition of a into objects |BFO 2 Reference: object aggregates may gain and lose parts while remaining numerically identical (one and the same individual) over time. This holds both for aggregates whose membership is determined naturally (the aggregate of cells in your body) and aggregates determined by fiat (a baseball team, a congressional committee).",,b is an object aggregate means: b is a material entity consisting exactly of a plurality of objects as member_parts at all times at which b exists. (axiom label in BFO2 Reference: [025-004]),"the nitrogen atoms in the atmosphere|the aggregate of bearings in a constant velocity axle joint|a collection of cells in a blood biobank.|the restaurants in Palo Alto|defined via attributive delimitations such as: the patients in this hospital|a symphony orchestra|the aggregate of blood cells in your body|defined through physical attachment: the aggregate of atoms in a lump of granite|defined through physical containment: the aggregate of molecules of carbon dioxide in a sealed container|an organization is an aggregate whose member parts have roles of specific types (for example in a jazz band, a chess club, a football team)|defined by fiat: the aggregate of members of an organization|your collection of Meissen ceramic plates.|a swarm of bees is an aggregate of members who are linked together through natural bonds",,,,,,(forall (x) (if (ObjectAggregate x) (and (MaterialEntity x) (forall (t) (if (existsAt x t) (exists (y z) (and (Object y) (Object z) (memberPartOfAt y x t) (memberPartOfAt z x t) (not (= y z)))))) (not (exists (w t_1) (and (memberPartOfAt w x t_1) (not (Object w)))))))) // axiom label in BFO2 CLIF: [025-004] ,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000027,,,,http://purl.obolibrary.org/obo/bfo.owl,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/BFO_0000026,one-dimensional spatial region,,,false,,,http://purl.obolibrary.org/obo/BFO_0000006,,,OneDimensionalSpatialRegion,1d-s-region,,,,,,,,,,,,,,,,,,A one-dimensional spatial region is a line or aggregate of lines stretching from one point in space to another. (axiom label in BFO2 Reference: [038-001]),an edge of a cube-shaped portion of space.,,,,,,(forall (x) (if (OneDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [038-001] ,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000026,,,,http://purl.obolibrary.org/obo/bfo.owl,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_405816004,procedure morphology,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_410662002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_410512000,current or specified,,,false,,,https://bioportal.bioontology.org/ontologies/SCTO#SCTO_410511007,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_410512000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_370129005,measurement method,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_410662002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_370133003,specimen substance,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_410662002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_123035007,12 hours,,,false,,,https://bioportal.bioontology.org/ontologies/SCTO#SCTO_7389001|http://purl.obolibrary.org/obo/BFO_0000038,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_123035007,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/BFO_0000030,object,,,false,,,http://purl.obolibrary.org/obo/BFO_0000040,,,Object,object,,,,,,,,,,,,,,,,"BFO 2 Reference: Each object is such that there are entities of which we can assert unproblematically that they lie in its interior, and other entities of which we can assert unproblematically that they lie in its exterior. This may not be so for entities lying at or near the boundary between the interior and exterior. This means that two objects – for example the two cells depicted in Figure 3 – may be such that there are material entities crossing their boundaries which belong determinately to neither cell. Something similar obtains in certain cases of conjoined twins (see below).|BFO 2 Reference: ‘objects’ are sometimes referred to as ‘grains’ [74|BFO 2 Reference: an object is a maximal causally unified material entity|BFO 2 Reference: To say that b is causally unified means: b is a material entity which is such that its material parts are tied together in such a way that, in environments typical for entities of the type in question,if c, a continuant part of b that is in the interior of b at t, is larger than a certain threshold size (which will be determined differently from case to case, depending on factors such as porosity of external cover) and is moved in space to be at t at a location on the exterior of the spatial region that had been occupied by b at t, then either b’s other parts will be moved in coordinated fashion or b will be damaged (be affected, for example, by breakage or tearing) in the interval between t and t.causal changes in one part of b can have consequences for other parts of b without the mediation of any entity that lies on the exterior of b. Material entities with no proper material parts would satisfy these conditions trivially. Candidate examples of types of causal unity for material entities of more complex sorts are as follows (this is not intended to be an exhaustive list):CU1: Causal unity via physical coveringHere the parts in the interior of the unified entity are combined together causally through a common membrane or other physical covering\. The latter points outwards toward and may serve a protective function in relation to what lies on the exterior of the entity [13, 47|BFO 2 Reference: BFO rests on the presupposition that at multiple micro-, meso- and macroscopic scales reality exhibits certain stable, spatially separated or separable material units, combined or combinable into aggregates of various sorts (for example organisms into what are called ‘populations’). Such units play a central role in almost all domains of natural science from particle physics to cosmology. Many scientific laws govern the units in question, employing general terms (such as ‘molecule’ or ‘planet’) referring to the types and subtypes of units, and also to the types and subtypes of the processes through which such units develop and interact. The division of reality into such natural units is at the heart of biological science, as also is the fact that these units may form higher-level units (as cells form multicellular organisms) and that they may also form aggregates of units, for example as cells form portions of tissue and organs form families, herds, breeds, species, and so on. At the same time, the division of certain portions of reality into engineered units (manufactured artifacts) is the basis of modern industrial technology, which rests on the distributed mass production of engineered parts through division of labor and on their assembly into larger, compound units such as cars and laptops. The division of portions of reality into units is one starting point for the phenomenon of counting.",,b is an object means: b is a material entity which manifests causal unity of one or other of the types CUn listed above & is of a type (a material universal) instances of which are maximal relative to this criterion of causal unity. (axiom label in BFO2 Reference: [024-001]),organism|organelle|cell|atom|cells and organisms|molecule|grain of sand|planet|solid portions of matter|engineered artifacts|star,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000030,,,,http://purl.obolibrary.org/obo/bfo.owl,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_118168003,specimen source morphology,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_410662002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/BFO_0000144,process profile,,b is a process_profile =Def. there is some process c such that b process_profile_of c (axiom label in BFO2 Reference: [093-002]),false,,,http://purl.obolibrary.org/obo/BFO_0000015,,,ProcessProfile,process-profile,,,,,,b is a process_profile =Def. there is some process c such that b process_profile_of c (axiom label in BFO2 Reference: [093-002]),,,,,,,,,,,,"b process_profile_of c holds when b proper_occurrent_part_of c& there is some proper_occurrent_part d of c which has no parts in common with b & is mutually dependent on b& is such that b, c and d occupy the same temporal region (axiom label in BFO2 Reference: [094-005])","The simplest type of process profiles are what we shall call ‘quality process profiles’, which are the process profiles which serve as the foci of the sort of selective abstraction that is involved when measurements are made of changes in single qualities, as illustrated, for example, by process profiles of mass, temperature, aortic pressure, and so on.|One important sub-family of rate process profiles is illustrated by the beat or frequency profiles of cyclical processes, illustrated by the 60 beats per minute beating process of John’s heart, or the 120 beats per minute drumming process involved in one of John’s performances in a rock band, and so on. Each such process includes what we shall call a beat process profile instance as part, a subtype of rate process profile in which the salient ratio is not distance covered but rather number of beat cycles per unit of time. Each beat process profile instance instantiates the determinable universal beat process profile. But it also instantiates multiple more specialized universals at lower levels of generality, selected from   rate process profilebeat process profileregular beat process profile3 bpm beat process profile4 bpm beat process profileirregular beat process profileincreasing beat process profileand so on.In the case of a regular beat process profile, a rate can be assigned in the simplest possible fashion by dividing the number of cycles by the length of the temporal region occupied by the beating process profile as a whole. Irregular process profiles of this sort, for example as identified in the clinic, or in the readings on an aircraft instrument panel, are often of diagnostic significance.|On a somewhat higher level of complexity are what we shall call rate process profiles, which are the targets of selective abstraction focused not on determinate quality magnitudes plotted over time, but rather on certain ratios between these magnitudes and elapsed times. A speed process profile, for example, is represented by a graph plotting against time the ratio of distance covered per unit of time. Since rates may change, and since such changes, too, may have rates of change, we have to deal here with a hierarchy of process profile universals at successive levels",,,,,,(forall (x y) (if (processProfileOf x y) (and (properContinuantPartOf x y) (exists (z t) (and (properOccurrentPartOf z y) (TemporalRegion t) (occupiesSpatioTemporalRegion x t) (occupiesSpatioTemporalRegion y t) (occupiesSpatioTemporalRegion z t) (not (exists (w) (and (occurrentPartOf w x) (occurrentPartOf w z))))))))) // axiom label in BFO2 CLIF: [094-005] |(iff (ProcessProfile a) (exists (b) (and (Process b) (processProfileOf a b)))) // axiom label in BFO2 CLIF: [093-002] ,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000144,,,,http://purl.obolibrary.org/obo/bfo.owl,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/BFO_0000019,quality,,,false,,,http://purl.obolibrary.org/obo/BFO_0000020,,,Quality,quality,,,,,,,,,,,,,,,,,,"a quality is a specifically dependent continuant that, in contrast to roles and dispositions, does not require any further process in order to be realized. (axiom label in BFO2 Reference: [055-001])",the color of a tomato|the ambient temperature of this portion of air|the length of the circumference of your waist|the mass of this piece of gold.|the shape of your nostril|the shape of your nose,,,,,,(forall (x) (if (Quality x) (SpecificallyDependentContinuant x))) // axiom label in BFO2 CLIF: [055-001] |(forall (x) (if (exists (t) (and (existsAt x t) (Quality x))) (forall (t_1) (if (existsAt x t_1) (Quality x))))) // axiom label in BFO2 CLIF: [105-001] ,"If an entity is a quality at any time that it exists, then it is a quality at every time that it exists. (axiom label in BFO2 Reference: [105-001])",,,,,,,,,,,,,,,,,,,,,,,BFO:0000019,,,,http://purl.obolibrary.org/obo/bfo.owl,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_363787002,observable entity,,Concepts in this hierarchy can be thought of as representing a question or procedure which can produce an answer or a result.,false,,,http://purl.obolibrary.org/obo/BFO_0000020,,,,,,,,,,Concepts in this hierarchy can be thought of as representing a question or procedure which can produce an answer or a result.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_363713009,has interpretation,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_410662002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_71388002,procedure,,Procedure concepts represent activities performed in the provision of health care.,false,,,http://purl.obolibrary.org/obo/BFO_0000015,,,,,,,,,,Procedure concepts represent activities performed in the provision of health care.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_260686004,method,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_410662002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_410513005,past,,,false,,,https://bioportal.bioontology.org/ontologies/SCTO#SCTO_410511007,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_410513005,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_246075003,causative agent,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_47429007,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_276339004,environment,,,false,,,http://purl.obolibrary.org/obo/BFO_0000029,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_49755003,morphologically abnormal structure,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_118956008,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000045,disorder,,A material entity which is clinically abnormal and part of an extended organism. Disorders are the physical basis of disease.,false,,,http://purl.obolibrary.org/obo/BFO_0000040,,,,,,,,creation date: 2009-06-23T11:39:44Z,,A material entity which is clinically abnormal and part of an extended organism. Disorders are the physical basis of disease.,Albert Goldfain,http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000045,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000046,epigenetic disorder,,"A disorder whose etiology involves (1) a modification to the patient's genomic DNA which leads to alterations in the normal expression pattern of the genome, but is (2) not a change in the nucleotide sequence.",false,,,http://purl.obolibrary.org/obo/OGMS_0000045,,,,,,,,creation date: 2009-06-23T11:40:27Z,,"A disorder whose etiology involves (1) a modification to the patient's genomic DNA which leads to alterations in the normal expression pattern of the genome, but is (2) not a change in the nucleotide sequence.",Albert Goldfain,http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000046,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000047,genetic disorder,,A disorder whose etiology involves an abnormality in the nucleotide sequence of an organism's genome.,false,,,http://purl.obolibrary.org/obo/OGMS_0000045,,,,,,,,creation date: 2009-06-23T11:41:14Z,,A disorder whose etiology involves an abnormality in the nucleotide sequence of an organism's genome.,Albert Goldfain,http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000047,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000040,pathological physical configuration,,A configuration which deviates in some way from a canonical configuration for a particular organism.,false,,,http://purl.obolibrary.org/obo/OGMS_0000039,,,,,,,,creation date: 2009-06-23T11:36:58Z,,A configuration which deviates in some way from a canonical configuration for a particular organism.,Albert Goldfain,http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000040,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_370130000,property,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_410662002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/BFO_0000146,two-dimensional continuant fiat boundary,,,false,,,http://purl.obolibrary.org/obo/BFO_0000140,,,TwoDimensionalContinuantFiatBoundary,2d-cf-boundary,,,,,,,,,,,,,,,,,,a two-dimensional continuant fiat boundary (surface) is a self-connected fiat surface whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [033-001]),,,,,,,(iff (TwoDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (TwoDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [033-001] ,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000146,,,,http://purl.obolibrary.org/obo/bfo.owl,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_698078002,mechanism of disease spread value,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_362981000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_698078002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/BFO_0000011,spatiotemporal region,,,false,,,http://purl.obolibrary.org/obo/BFO_0000003,,,SpatiotemporalRegion,st-region,,,,,,,,,,,,,,,,,,A spatiotemporal region is an occurrent entity that is part of spacetime. (axiom label in BFO2 Reference: [095-001]),the spatiotemporal region occupied by a process of cellular meiosis.|the spatiotemporal region occupied by the development of a cancer tumor|the spatiotemporal region occupied by a human life,,,,,,(forall (r) (if (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion r r))) // axiom label in BFO2 CLIF: [107-002] |(forall (x t) (if (SpatioTemporalRegion x) (exists (y) (and (SpatialRegion y) (spatiallyProjectsOntoAt x y t))))) // axiom label in BFO2 CLIF: [099-001] |(forall (x y) (if (and (SpatioTemporalRegion x) (occurrentPartOf y x)) (SpatioTemporalRegion y))) // axiom label in BFO2 CLIF: [096-001] |(forall (x) (if (SpatioTemporalRegion x) (Occurrent x))) // axiom label in BFO2 CLIF: [095-001] |(forall (x) (if (SpatioTemporalRegion x) (exists (y) (and (TemporalRegion y) (temporallyProjectsOnto x y))))) // axiom label in BFO2 CLIF: [098-001] ,All parts of spatiotemporal regions are spatiotemporal regions. (axiom label in BFO2 Reference: [096-001])|Each spatiotemporal region projects_onto some temporal region. (axiom label in BFO2 Reference: [098-001])|Every spatiotemporal region s is such that s occupies_spatiotemporal_region s. (axiom label in BFO2 Reference: [107-002])|Every spatiotemporal region occupies_spatiotemporal_region itself.|Each spatiotemporal region at any time t projects_onto some spatial region at t. (axiom label in BFO2 Reference: [099-001]),,,,,,,,,,,,,,,,,,,,,,,BFO:0000011,,,,http://purl.obolibrary.org/obo/bfo.owl,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_281296001,result comment,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_362981000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_123005000,part of,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_410662002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_307120002,legal proceeding,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_362981000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_307120002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_246112005,severity,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_410662002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_363710007,indirect device,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_405815000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_363702006,has focus,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_410662002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_405814001,procedure site - Indirect,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_363704007,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OBI_0000011,planned process,,A processual entity that realizes a plan which is the concretization of a plan specification.,false,,,http://purl.obolibrary.org/obo/BFO_0000015,,,,,,,,,,A processual entity that realizes a plan which is the concretization of a plan specification.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OBI:0000011,,,,,,,,http://purl.obolibrary.org/obo/obi.owl,,,,,,,,,,,,,,,,,,,,,,,
http://www.geneontology.org/formats/oboInOwl#Synonym,Synonym,,,false,,,http://purl.obolibrary.org/obo/IAO_0000102,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,oboInOwl:Synonym,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_363701004,direct substance,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_410662002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_21703008,physical hazard,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_362981000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_21703008,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/BFO_0000141,immaterial entity,,,false,,,http://purl.obolibrary.org/obo/BFO_0000004,,,ImmaterialEntity,immaterial,,,,,,,,,,,,,,,,"BFO 2 Reference: Immaterial entities are divided into two subgroups:boundaries and sites, which bound, or are demarcated in relation, to material entities, and which can thus change location, shape and size and as their material hosts move or change shape or size (for example: your nasal passage; the hold of a ship; the boundary of Wales (which moves with the rotation of the Earth) [38, 7, 10",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000141,,,,http://purl.obolibrary.org/obo/bfo.owl,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_223496003,geographical and/or political region of the world,,,false,,,http://purl.obolibrary.org/obo/BFO_0000006,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_303102005,special disorder atoms,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_281586009,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_363699004,direct device,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_405815000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_411116001,has dose form,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_410662002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000409,denotator type,,A denotator type indicates how a term should be interpreted from an ontological perspective.,false,,,http://purl.obolibrary.org/obo/IAO_0000102,,,,,,,,,,A denotator type indicates how a term should be interpreted from an ontological perspective.,Alan Ruttenberg,"Barry Smith, Werner Ceusters",,,,,,,,,,,"The Basic Formal Ontology ontology makes a distinction between Universals and defined classes, where the formal are ""natural kinds"" and the latter arbitrary collections of entities.",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,IAO:0000409,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000078,curation status specification,,The curation status of the term. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value.,false,,,http://purl.obolibrary.org/obo/IAO_0000102,,,,,,,,,,The curation status of the term. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value.,PERSON:Bill Bug,GROUP:OBI:<http://purl.obolibrary.org/obo/obi>|OBI_0000266,,,,,,,,Better to represent curation as a process with parts and then relate labels to that process (in IAO meeting),curation status specification,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000125,,,,,,,,,,,,,,,,,,,,,IAO:0000078,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/BFO_0000040,material entity,,,false,,,http://purl.obolibrary.org/obo/BFO_0000004,,,MaterialEntity,material,,,,,,,,,,,,,,,,"BFO 2 Reference: Object, Fiat Object Part and Object Aggregate are not intended to be exhaustive of Material Entity. Users are invited to propose new subcategories of Material Entity.|BFO 2 Reference: Material entities (continuants) can preserve their identity even while gaining and losing material parts. Continuants are contrasted with occurrents, which unfold themselves in successive temporal parts or phases [60|BFO 2 Reference: ‘Matter’ is intended to encompass both mass and energy (we will address the ontological treatment of portions of energy in a later version of BFO). A portion of matter is anything that includes elementary particles among its proper or improper parts: quarks and leptons, including electrons, as the smallest particles thus far discovered; baryons (including protons and neutrons) at a higher level of granularity; atoms and molecules at still higher levels, forming the cells, organs, organisms and other material entities studied by biologists, the portions of rock studied by geologists, the fossils studied by paleontologists, and so on.Material entities are three-dimensional entities (entities extended in three spatial dimensions), as contrasted with the processes in which they participate, which are four-dimensional entities (entities extended also along the dimension of time).According to the FMA, material entities may have immaterial entities as parts – including the entities identified below as sites; for example the interior (or ‘lumen’) of your small intestine is a part of your body. BFO 2.0 embodies a decision to follow the FMA here.",,A material entity is an independent continuant that has some portion of matter as proper or improper continuant part. (axiom label in BFO2 Reference: [019-002]),an aggregate of human beings.|a forest fire|a tornado|a human being|an energy wave|the undetached arm of a human being|an epidemic|a flame|a photon|a sea wave|a puff of smoke|a hurricane,,,,,,(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt x y t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [021-002] |(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt y x t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [020-002] |(forall (x) (if (MaterialEntity x) (IndependentContinuant x))) // axiom label in BFO2 CLIF: [019-002] ,every entity of which a material entity is continuant part is also a material entity. (axiom label in BFO2 Reference: [021-002])|Every entity which has a material entity as continuant part is a material entity. (axiom label in BFO2 Reference: [020-002]),,,,,,,,,,,,,,,,,,,,,,,BFO:0000040,,,,http://purl.obolibrary.org/obo/bfo.owl,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_7389001,time frame,,,false,,,http://purl.obolibrary.org/obo/BFO_0000008|http://purl.obolibrary.org/obo/ogms.owl#SCTO_362981000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_7389001,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_129325002,introduction - action,,,false,,,https://bioportal.bioontology.org/ontologies/SCTO#SCTO_129264002|http://purl.obolibrary.org/obo/ogms.owl#SCTO_129264002_2,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_129325002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/BFO_0000038,one-dimensional temporal region,,,false,,,http://purl.obolibrary.org/obo/BFO_0000008|http://purl.obolibrary.org/obo/ogms.owl#SCTO_362981000,,,OneDimensionalTemporalRegion,1d-t-region,,,,,,,,,,,,,,,,"BFO 2 Reference: A temporal interval is a special kind of one-dimensional temporal region, namely one that is self-connected (is without gaps or breaks).",,A one-dimensional temporal region is a temporal region that is extended. (axiom label in BFO2 Reference: [103-001]),the temporal region during which a process occurs.,,,,,,(forall (x) (if (OneDimensionalTemporalRegion x) (TemporalRegion x))) // axiom label in BFO2 CLIF: [103-001] ,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000038,,,,http://purl.obolibrary.org/obo/bfo.owl,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_272125009,priorities,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_272103003,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/BFO_0000002,continuant,,,false,,,http://purl.obolibrary.org/obo/BFO_0000001,,,Continuant,continuant,,,,,,,,,,,,,,,,"BFO 2 Reference: Continuant entities are entities which can be sliced to yield parts only along the spatial dimension, yielding for example the parts of your table which we call its legs, its top, its nails. ‘My desk stretches from the window to the door. It has spatial parts, and can be sliced (in space) in two. With respect to time, however, a thing is a continuant.’ [60, p. 240|Continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example, in an expansion involving bringing in some of Ceuster's other portions of reality, questions are raised as to whether universals are continuants",,"A continuant is an entity that persists, endures, or continues to exist through time while maintaining its identity. (axiom label in BFO2 Reference: [008-002])",,,,,,,(forall (x y) (if (and (Continuant x) (exists (t) (continuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [009-002] |(forall (x y) (if (and (Continuant x) (exists (t) (hasContinuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [126-001] |(forall (x) (if (Continuant x) (Entity x))) // axiom label in BFO2 CLIF: [008-002] |(forall (x) (if (Material Entity x) (exists (t) (and (TemporalRegion t) (existsAt x t))))) // axiom label in BFO2 CLIF: [011-002] ,"if b is a material entity, then there is some temporal interval (referred to below as a one-dimensional temporal region) during which b exists. (axiom label in BFO2 Reference: [011-002])|if b is a continuant and if, for some t, c has_continuant_part b at t, then c is a continuant. (axiom label in BFO2 Reference: [126-001])|if b is a continuant and if, for some t, cis continuant_part of b at t, then c is a continuant. (axiom label in BFO2 Reference: [009-002])",,,,,,,,,,,,,,,,,,,,,,,BFO:0000002,,,,http://purl.obolibrary.org/obo/bfo.owl,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_414753003,mode of transmission value,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_362981000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_414753003,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/BFO_0000031,generically dependent continuant,,b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001]),false,,,http://purl.obolibrary.org/obo/BFO_0000002,,,GenericallyDependentContinuant,gdc,,,,,,b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001]),,,,,,,,,,,,,"the pdf file on your laptop, the pdf file that is a copy thereof on my laptop|the sequence of this protein molecule; the sequence that is a copy thereof in that protein molecule.|The entries in your database are patterns instantiated as quality instances in your hard drive. The database itself is an aggregate of such patterns. When you create the database you create a particular instance of the generically dependent continuant type database. Each entry in the database is an instance of the generically dependent continuant type IAO: information content entity.",,,,,,(iff (GenericallyDependentContinuant a) (and (Continuant a) (exists (b t) (genericallyDependsOnAt a b t)))) // axiom label in BFO2 CLIF: [074-001] ,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000031,,,,http://purl.obolibrary.org/obo/bfo.owl,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/IAO_0000225,obsolescence reason specification,,The reason for which a term has been deprecated. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value.,false,,,http://purl.obolibrary.org/obo/IAO_0000102,,,,,,,,,,The reason for which a term has been deprecated. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value.,PERSON: Melanie Courtot|PERSON: Alan Ruttenberg,,,,,,,,,"The creation of this class has been inspired in part by Werner Ceusters' paper, Applying evolutionary terminology auditing to the Gene Ontology.",obsolescence reason specification,,,,,,,,,,,http://purl.obolibrary.org/obo/IAO_0000125,,,,,,,,,,,,,,,,,,,,,IAO:0000225,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_277367001,nature of procedure values,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_277302009,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_260787004,physical object,,Concepts in the physical object  hierarchy include natural and man-made objects. One use for these concepts is modeling procedures that use devices (e.g. catheterisation).,false,,,http://purl.obolibrary.org/obo/BFO_0000030,,,,,,,,,,Concepts in the physical object  hierarchy include natural and man-made objects. One use for these concepts is modeling procedures that use devices (e.g. catheterisation).,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_115670007,classification system,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_362981000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_115670007,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_410607006,organism,,This hierarchy includes organisms of significance in human and animal medicine. Organisms are also used in modeling the causes of diseases in SNOMED CT.,false,,,http://purl.obolibrary.org/obo/BFO_0000030,,,,,,,,,,This hierarchy includes organisms of significance in human and animal medicine. Organisms are also used in modeling the causes of diseases in SNOMED CT.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://www.geneontology.org/formats/oboInOwl#SynonymType,SynonymType,,,false,,,http://purl.obolibrary.org/obo/IAO_0000102,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,oboInOwl:SynonymType,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_370132008,scale type,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_410662002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_405813007,procedure site - Direct,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_363704007,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_257867005,insertion - action,,,false,,,https://bioportal.bioontology.org/ontologies/SCTO#SCTO_129325002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_257867005,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_246454002,occurrence,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_410662002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_363698007,finding site,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_410662002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://www.geneontology.org/formats/oboInOwl#DbXref,DbXref,,,false,,,http://purl.obolibrary.org/obo/IAO_0000102,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,oboInOwl:DbXref,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_442083009,anatomical or acquired body structure,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_123037004,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000060,bodily process,,,false,,,http://purl.obolibrary.org/obo/BFO_0000015,,,,,,,,creation date: 2009-06-23T11:53:49Z,,,Albert Goldfain,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000060,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000064,chronic disease course,,"A disease course that (a) does not terminate in a return to normal homeostasis and (b) would, absent intervention, fall within abnormal homeostatic range.",false,,,http://purl.obolibrary.org/obo/OGMS_0000063,,,,,,,,creation date: 2009-06-23T11:56:26Z,,"A disease course that (a) does not terminate in a return to normal homeostasis and (b) would, absent intervention, fall within abnormal homeostatic range.",Albert Goldfain,http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000064,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000063,disease course,,The totality of all processes through which a given disease instance is realized.,false,,,http://purl.obolibrary.org/obo/BFO_0000015,,,,,,,,creation date: 2009-06-23T11:55:44Z,,The totality of all processes through which a given disease instance is realized.,Albert Goldfain,http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000063,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000061,pathological bodily process,,A bodily process that is clinically abnormal.,false,,,http://purl.obolibrary.org/obo/OGMS_0000060,,,,,,,,creation date: 2009-06-23T11:54:29Z,,A bodily process that is clinically abnormal.,Albert Goldfain,http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000061,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000065,progressive disease course,,"A disease course that (a) does not terminate in a return to normal homeostasis and (b) would, absent intervention, involve an increasing deviation from homeostasis.",false,,,http://purl.obolibrary.org/obo/OGMS_0000063,,,,,,,,creation date: 2009-06-23T11:57:09Z,,"A disease course that (a) does not terminate in a return to normal homeostasis and (b) would, absent intervention, involve an increasing deviation from homeostasis.",Albert Goldfain,http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000065,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000066,transient disease course,,A disease course that terminates in a return to normal homeostasis.,false,,,http://purl.obolibrary.org/obo/OGMS_0000063,,,,,,,,creation date: 2009-06-23T11:57:44Z,,A disease course that terminates in a return to normal homeostasis.,Albert Goldfain,http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000066,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/BFO_0000035,process boundary,,p is a process boundary =Def. p is a temporal part of a process & p has no proper temporal parts. (axiom label in BFO2 Reference: [084-001]),false,,,http://purl.obolibrary.org/obo/BFO_0000003,,,ProcessBoundary,p-boundary,,,,,,p is a process boundary =Def. p is a temporal part of a process & p has no proper temporal parts. (axiom label in BFO2 Reference: [084-001]),,,,,,,,,,,,,the boundary between the 2nd and 3rd year of your life.,,,,,,(forall (x) (if (ProcessBoundary x) (exists (y) (and (ZeroDimensionalTemporalRegion y) (occupiesTemporalRegion x y))))) // axiom label in BFO2 CLIF: [085-002] |(iff (ProcessBoundary a) (exists (p) (and (Process p) (temporalPartOf a p) (not (exists (b) (properTemporalPartOf b a)))))) // axiom label in BFO2 CLIF: [084-001] ,Every process boundary occupies_temporal_region a zero-dimensional temporal region. (axiom label in BFO2 Reference: [085-002]),,,,,,,,,,,,,,,,,,,,,,,BFO:0000035,,,,http://purl.obolibrary.org/obo/bfo.owl,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_255234002,after,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_47429007,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_257937003,soft tissue transfer,,,false,,,https://bioportal.bioontology.org/ontologies/SCTO#SCTO_129347002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_257937003,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_272127001,event orders,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_272126005,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_91723000,anatomical structure,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_442083009,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_263680009,autoimmune,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_308489006,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_42752001,due to,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_47429007,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/BFO_0000145,relational quality,,"b is a relational quality = Def. for some independent continuants c, d and for some time t: b quality_of c at t & b quality_of d at t. (axiom label in BFO2 Reference: [057-001])",false,,,http://purl.obolibrary.org/obo/BFO_0000019,,,RelationalQuality,r-quality,,,,,,"b is a relational quality = Def. for some independent continuants c, d and for some time t: b quality_of c at t & b quality_of d at t. (axiom label in BFO2 Reference: [057-001])",,,,,,,,,,,,,"a marriage bond, an instance of love, an obligation between one person and another.|John’s role of husband to Mary is dependent on Mary’s role of wife to John, and both are dependent on the object aggregate comprising John and Mary as member parts joined together through the relational quality of being married.",,,,,,(iff (RelationalQuality a) (exists (b c t) (and (IndependentContinuant b) (IndependentContinuant c) (qualityOfAt a b t) (qualityOfAt a c t)))) // axiom label in BFO2 CLIF: [057-001] ,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000145,,,,http://purl.obolibrary.org/obo/bfo.owl,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_363705008,has definitional manifestation,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_410662002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_246061005,attribute,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_106237007,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000055,clinical history taking,,An interview in which a clinician elicits a clinical history from a patient or from a third party who is reporting on behalf of the patient.,false,,,http://purl.obolibrary.org/obo/BFO_0000015,,,,,,,,creation date: 2009-06-23T11:49:16Z,,An interview in which a clinician elicits a clinical history from a patient or from a third party who is reporting on behalf of the patient.,Albert Goldfain,http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000055,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000057,physical examination,,A sequence of acts of observing and measuring qualities of a patient performed by a clinician; measurements may occur with and without elicitation.,false,,,http://purl.obolibrary.org/obo/BFO_0000015,,,,,,,,creation date: 2010-07-19T11:50:18Z,,A sequence of acts of observing and measuring qualities of a patient performed by a clinician; measurements may occur with and without elicitation.,Albert Goldfain,http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000057,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000059,etiological process,,A process in an organism that leads to a subsequent disorder.,false,,,http://purl.obolibrary.org/obo/BFO_0000015,,,,,,,,creation date: 2009-06-23T11:53:07Z,,A process in an organism that leads to a subsequent disorder.,Albert Goldfain,http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000059,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000051,constitutional genetic disorder,,A genetic disorder inherited during conception that is part of all cells in the organism.,false,,,http://purl.obolibrary.org/obo/OGMS_0000047,,,,,,,,creation date: 2009-06-23T11:43:44Z,,A genetic disorder inherited during conception that is part of all cells in the organism.,Albert Goldfain,http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000051,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000050,acquired genetic disorder,,A genetic disorder acquired by a single cell in an organism that leads to a population of cells within the organism bearing the disorder.,false,,,http://purl.obolibrary.org/obo/OGMS_0000047,,,,,,,,creation date: 2009-06-23T11:43:09Z,,A genetic disorder acquired by a single cell in an organism that leads to a population of cells within the organism bearing the disorder.,Albert Goldfain,http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000050,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000056,laboratory test,,"A measurement assay that has as input a patient-derived specimen, and as output a result that represents a quality of the specimen.",false,,,http://purl.obolibrary.org/obo/BFO_0000015,,,,,,,,creation date: 2009-06-23T11:49:49Z,,"A measurement assay that has as input a patient-derived specimen, and as output a result that represents a quality of the specimen.",Albert Goldfain,http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000056,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_309825002,spatial and relational concept,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_362981000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_703763000,precondition value,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_362981000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_703763000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_363704007,procedure site,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_410662002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_277302009,natures,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_272099008,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_138875005,SNOMED CT Concept,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_00000000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_422096002,dosing instruction fragment,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_362981000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_422096002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000019,preclinical finding,,A representation of a quality of a patient that is (1) recorded by a clinician because the quality is hypothesized to be of clinical significance and (2) refers to qualities obtaining in the patient prior to their becoming detectable in a clinical history taking or physical examination.,false,,,http://purl.obolibrary.org/obo/IAO_0000027,,,,,,,,creation date: 2009-06-23T10:22:44Z,,A representation of a quality of a patient that is (1) recorded by a clinician because the quality is hypothesized to be of clinical significance and (2) refers to qualities obtaining in the patient prior to their becoming detectable in a clinical history taking or physical examination.,Albert Goldfain,http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000019,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000018,laboratory finding,,A representation of a quality of a specimen that is the output of a laboratory test and that can support an inference to an assertion about some quality of the patient.,false,,,http://purl.obolibrary.org/obo/OGMS_0000014,,,,,,,,creation date: 2009-06-23T10:21:58Z,,A representation of a quality of a specimen that is the output of a laboratory test and that can support an inference to an assertion about some quality of the patient.,Albert Goldfain,http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000018,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000017,image finding,,A representation of an image that supports an inference to an assertion about some quality of a patient.,false,,,http://purl.obolibrary.org/obo/OGMS_0000014,,,,,,,,creation date: 2009-06-23T10:21:10Z,,A representation of an image that supports an inference to an assertion about some quality of a patient.,Albert Goldfain,http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000017,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000016,clinical picture,,"A representation of clinically significant bodily components, dispositions, and/or bodily processes of a human being that is inferred from relevant clinical findings.",false,,,http://purl.obolibrary.org/obo/IAO_0000027,,,,,,,,creation date: 2010-07-19T10:20:20Z,,"A representation of clinically significant bodily components, dispositions, and/or bodily processes of a human being that is inferred from relevant clinical findings.",Albert Goldfain,http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000016,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000014,clinical finding,,"Concepts in this hierarchy represent the result of a clinical observation, assessment or judgement, and include both normal and abnormal clinical states.",false,,,http://purl.obolibrary.org/obo/IAO_0000027,,,,,,,,creation date: 2010-07-19T10:18:02Z,,"Concepts in this hierarchy represent the result of a clinical observation, assessment or judgement, and include both normal and abnormal clinical states.",Albert Goldfain,http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000014,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000015,clinical history,,A series of statements representing health-relevant qualities of a patient and of a patient's family.,false,,,http://purl.obolibrary.org/obo/OGMS_0000014,,,,,,,,creation date: 2010-07-19T10:18:59Z,,A series of statements representing health-relevant qualities of a patient and of a patient's family.,Albert Goldfain,http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000015,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_118598001,measurement property,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_362981000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_118598001,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000081,pathological derivation,,A pathological bodily process in which matter is reorganized in such a way as to give rise to new pathological formations which take the place of entities existing earlier.,false,,,http://purl.obolibrary.org/obo/OGMS_0000061,,,,,,,,creation date: 2009-07-13T02:17:24Z,,A pathological bodily process in which matter is reorganized in such a way as to give rise to new pathological formations which take the place of entities existing earlier.,Albert Goldfain,http://ontology.buffalo.edu/bio/ISMB/ISMB_Bio-ontologies.pdf,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000081,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000088,patient symptom report,,A communication from a patient about something they perceive as being abnormal about their body or life.,false,,,http://purl.obolibrary.org/obo/IAO_0000030,,,,,,,,creation date: 2010-01-25T04:51:11Z,,A communication from a patient about something they perceive as being abnormal about their body or life.,Albert Goldfain,http://code.google.com/p/ogms/issues/detail?id=12,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000088,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000080,pathological transformation,,A pathological bodily process in which a canonical anatomical structure becomes a pathological anatomical structure.,false,,,http://purl.obolibrary.org/obo/OGMS_0000061,,,,,,,,creation date: 2009-07-13T02:17:07Z,,A pathological bodily process in which a canonical anatomical structure becomes a pathological anatomical structure.,Albert Goldfain,http://ontology.buffalo.edu/bio/ISMB/ISMB_Bio-ontologies.pdf,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000080,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000084,organism population,,An aggregate of organisms of the same type.,false,,,http://purl.obolibrary.org/obo/BFO_0000040,,,,,,,,creation date: 2009-11-24T04:51:11Z,,An aggregate of organisms of the same type.,Albert Goldfain,http://code.google.com/p/ogms/issues/detail?id=33,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000084,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000089,congenital malformation,,A structurally anomalous part of an organism acquired during fetal development and present at birth (but not necessarily hereditary) which is hypothesized to be harmful for the organism.,false,,,http://purl.obolibrary.org/obo/BFO_0000040,,,,,,,,creation date: 2010-03-31T04:51:11Z,,A structurally anomalous part of an organism acquired during fetal development and present at birth (but not necessarily hereditary) which is hypothesized to be harmful for the organism.,Albert Goldfain,http://code.google.com/p/ogms/issues/detail?id=28,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000089,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000085,pain,,"A bodily process in an organism S involving two integrated levels: (a) activation of the nociceptive system and associated emotion generating brain components of S, and (b) a simultaneous aversive sensory and emotional experience on the part of S, where (b) is phenomenologically similar to the sort of aversive experience involved in pain with concordant tissue damage.",false,,,http://purl.obolibrary.org/obo/OGMS_0000020,,,,,,,,creation date: 2009-11-24T04:51:11Z,,"A bodily process in an organism S involving two integrated levels: (a) activation of the nociceptive system and associated emotion generating brain components of S, and (b) a simultaneous aversive sensory and emotional experience on the part of S, where (b) is phenomenologically similar to the sort of aversive experience involved in pain with concordant tissue damage.",Albert Goldfain,http://www.referent-tracking.com/RTU/sendfile/?file=painTokyo1_27_2011.pdf,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000085,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000083,physical examination finding,,TODO: Define.,false,,,http://purl.obolibrary.org/obo/OGMS_0000014,,,,,,,,creation date: 2009-11-24T04:51:11Z,,TODO: Define.,Albert Goldfain,http://code.google.com/p/ogms/issues/detail?id=26,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000083,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000087,extended organism,,"An object aggregate consisting of an organism and all material entities located within the organism, overlapping the organism, or occupying sites formed in part by the organism.",false,,,http://purl.obolibrary.org/obo/BFO_0000040,,,,,,,,creation date: 2010-01-25T04:51:11Z,,"An object aggregate consisting of an organism and all material entities located within the organism, overlapping the organism, or occupying sites formed in part by the organism.",Albert Goldfain,http://code.google.com/p/ogms/issues/detail?id=3,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000087,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000086,syndrome,,A pattern of signs and symptoms that typically co-occur.,false,,,http://purl.obolibrary.org/obo/BFO_0000019,,,,,,,,creation date: 2009-11-24T04:51:11Z,,A pattern of signs and symptoms that typically co-occur.,Albert Goldfain,http://code.google.com/p/ogms/issues/detail?id=32,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000086,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/OGMS_0000082,pathological invasion,,TODO: Define.,false,,,http://purl.obolibrary.org/obo/OGMS_0000061,,,,,,,,creation date: 2009-07-13T02:17:47Z,,TODO: Define.,Albert Goldfain,http://ontology.buffalo.edu/bio/ISMB/ISMB_Bio-ontologies.pdf,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,OGMS:0000082,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_105904009,type of drug preparation,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_362981000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_106237007,linkage concept,,"Linkage concept codes are intended to link two or more other codes to each other to express compositional meanings. All concept codes that can be used as a Relationship Type are included under | Linkage concept |.The ones approved for use are the Concept Model Attributes. Implementation guidance is as yet quite limited for the other Linkage concept codes. Use of them should be regarded as non-standard, tentative and experimental, requiring extra care.",false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_138875005,,,,,,,,,,"Linkage concept codes are intended to link two or more other codes to each other to express compositional meanings. All concept codes that can be used as a Relationship Type are included under | Linkage concept |.The ones approved for use are the Concept Model Attributes. Implementation guidance is as yet quite limited for the other Linkage concept codes. Use of them should be regarded as non-standard, tentative and experimental, requiring extra care.",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_118171006,specimen procedure,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_410662002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_405815000,procedure device,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_410662002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_284009009,route of administration value,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_362981000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/BFO_0000020,specifically dependent continuant,,b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003]),false,,,http://purl.obolibrary.org/obo/BFO_0000002,,,SpecificallyDependentContinuant,sdc,,,,,,b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003]),,,,,,,,,,"Specifically dependent continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. We're not sure what else will develop here, but for example there are questions such as what are promises, obligation, etc.",,,"the mutual dependence of proton donors and acceptors in chemical reactions [79|the pink color of a medium rare piece of grilled filet mignon at its center|the mutual dependence of the role predator and the role prey as played by two organisms in a given interaction|of relational dependent continuants (multiple bearers): John’s love for Mary, the ownership relation between John and this statue, the relation of authority between John and his subordinates.|the shape of this hole.|the role of being a doctor|the function of this heart: to pump blood|the smell of this portion of mozzarella|of one-sided specifically dependent continuants: the mass of this tomato|the disposition of this fish to decay|Reciprocal specifically dependent continuants: the function of this key to open this lock and the mutually dependent disposition of this lock: to be opened by this key",,,,,,(iff (SpecificallyDependentContinuant a) (and (Continuant a) (forall (t) (if (existsAt a t) (exists (b) (and (IndependentContinuant b) (not (SpatialRegion b)) (specificallyDependsOnAt a b t))))))) // axiom label in BFO2 CLIF: [050-003] ,,,,,,,,,,,,,,,,,,,,,,,,BFO:0000020,,,,http://purl.obolibrary.org/obo/bfo.owl,,,,,,,,,,,,,,,,,,,,,,,,,,,
https://bioportal.bioontology.org/ontologies/SCTO#SCTO_106239005,modifier mainly for procedure,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_362981000,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,SCTO:SCTO_106239005,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_116676008,associated morphology,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_410662002,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
http://purl.obolibrary.org/obo/ogms.owl#SCTO_24028007,right,,,false,,,http://purl.obolibrary.org/obo/ogms.owl#SCTO_182353008,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
