format-version: 1.2 date: 01:11:2012 16:28 auto-generated-by: OBO-Edit 2.1-beta4 default-namespace: solanaceae_phenotype [Term] id: SP:0000000 name: placenta color def: "The color of the placenta." [SGN:NM] xref: PATO:0000014 is_a: SP:0000012 ! fruit color [Term] id: SP:0000001 name: seedling synonym: "TO:0000620" RELATED [] xref: PO:0007057 is_a: SP:0000205 ! whole plant phenotype [Term] id: SP:0000002 name: plant size synonym: "TO:0000207" RELATED [] xref: PATO:0000117 xref: PO:0000003 xref: PO:0007130 xref: TO:0000207 is_a: SP:0000205 ! whole plant phenotype [Term] id: SP:0000003 name: plant habit synonym: "TO:0000357" RELATED [] xref: PO:0007134 is_a: SP:0000205 ! whole plant phenotype [Term] id: SP:0000004 name: leaf morphology synonym: "TO:0000419" RELATED [] xref: PATO:0000051 xref: PO:0001050 xref: PO:0009025 is_a: SP:0000108 ! leaf [Term] id: SP:0000005 name: leaf color synonym: "TO:0000326" RELATED [] xref: PATO:0000014 xref: PO:0005645 is_a: SP:0000108 ! leaf [Term] id: SP:0000006 name: flowering xref: PO:0007016 xref: PO:0009046 is_a: SP:0001000 ! Solanaceae phenotype ontology [Term] id: SP:0000007 name: inflorescence synonym: "TO:0000373" RELATED [] xref: PO:0001083 xref: PO:0009049 relationship: part_of SP:0000192 ! shoot phenotype [Term] id: SP:0000008 name: flower morphology synonym: "TO:0000499" RELATED [] xref: PATO:0000051 xref: PO:0007615 xref: PO:0009046 is_a: SP:0000115 ! flower [Term] id: SP:0000009 name: flower color synonym: "TO:0000537" RELATED [] xref: PATO:0000014 xref: PO:0007600 xref: PO:0009046 is_a: SP:0000115 ! flower [Term] id: SP:0000010 name: fruit size xref: PATO:0000117 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000011 ! fruit morphology [Term] id: SP:0000011 name: fruit morphology xref: PATO:0000051 xref: PO:0007042 xref: PO:0009001 relationship: part_of SP:0000037 ! fruit [Term] id: SP:0000012 name: fruit color xref: PATO:0000014 xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 relationship: part_of SP:0000037 ! fruit [Term] id: SP:0000013 name: fruit ripening def: "Fruit ripening process." [SGN:NM] xref: PO:0007010 xref: PO:0009001 is_a: SP:0000037 ! fruit [Term] id: SP:0000014 name: sterility synonym: "TO:0000485" RELATED [] xref: PO:0007616 xref: PO:0009046 is_a: SP:0001000 ! Solanaceae phenotype ontology [Term] id: SP:0000015 name: disease and stress response synonym: "TO:0000063" RELATED [] xref: PO:0000003 xref: PO:0007130 xref: PO:0007134 is_a: SP:0000205 ! whole plant phenotype [Term] id: SP:0000016 name: anthocyanin content synonym: "TO:0000071" RELATED [] is_a: SP:0000019 ! biochemical metabolites [Term] id: SP:0000017 name: chlorophyll content synonym: "TO:0000495" RELATED [] is_a: SP:0000019 ! biochemical metabolites [Term] id: SP:0000018 name: hair modifications synonym: "trichomes" RELATED [] xref: PO:0000282 is_a: SP:0001000 ! Solanaceae phenotype ontology [Term] id: SP:0000019 name: biochemical metabolites synonym: "TO:0000277" RELATED [] is_a: SP:0001000 ! Solanaceae phenotype ontology [Term] id: SP:0000020 name: root modifications xref: PO:0007520 xref: PO:0009005 is_a: SP:0001000 ! Solanaceae phenotype ontology [Term] id: SP:0000021 name: extremely small plant xref: PATO:0000969 xref: PO:0000003 xref: PO:0007130 xref: PO:0007134 is_a: SP:0000002 ! plant size [Term] id: SP:0000022 name: small plant xref: PATO:0000587 xref: PO:0000003 xref: PO:0007130 xref: PO:0007134 is_a: SP:0000002 ! plant size [Term] id: SP:0000023 name: large plant xref: PATO:0000586 xref: PO:0000003 xref: PO:0007130 xref: PO:0007134 is_a: SP:0000002 ! plant size [Term] id: SP:0000024 name: seed morphology xref: PATO:0000051 xref: PO:0001170 xref: PO:0009010 is_a: SP:0000100 ! seed [Term] id: SP:0000025 name: nutritional or hormonal disorder is_a: SP:0001000 ! Solanaceae phenotype ontology [Term] id: SP:0000026 name: virescent leaf def: "Chlorophyll deficiency localized at growing point." [TGRC:F "Tomato Genetics Resource Center"] xref: PATO:0001941 xref: PO:0001050 xref: PO:0005645 is_a: SP:0000054 ! yellow-green leaf [Term] id: SP:0000027 name: disease resistance xref: PO:0000003 xref: PO:0007130 xref: PO:0007134 is_a: SP:0000015 ! disease and stress response [Term] id: SP:0000028 name: brown green leaf color def: "Olive, brown, blue-green leaf." [TGRC:U "Tomato Genetics Resource Center"] xref: PATO:0001942 xref: PO:0001050 xref: PO:0005645 is_a: SP:0000005 ! leaf color [Term] id: SP:0000029 name: allozyme variant is_a: SP:0001000 ! Solanaceae phenotype ontology [Term] id: SP:0000030 name: vascular tissue is_a: SP:0001000 ! Solanaceae phenotype ontology [Term] id: SP:0000031 name: internode length synonym: "TO:0000145" RELATED [] xref: PATO:0000122 xref: PO:0007089 xref: PO:0020142 is_a: SP:0000003 ! plant habit [Term] id: SP:0000032 name: branching synonym: "TO:0000361" RELATED [] xref: PO:0006343 xref: PO:0007073 is_a: SP:0000003 ! plant habit [Term] id: SP:0000033 name: aborted growth synonym: "TO:0000195" RELATED [] xref: PATO:0000297 xref: PO:0007112 xref: PO:0009006 is_a: SP:0000003 ! plant habit [Term] id: SP:0000034 name: other plant habit def: "OBSOLETE. Use parent term instead SP:0000003." [SGN:NM] xref: PO:0007134 is_obsolete: true [Term] id: SP:0000035 name: nutritional disorder is_a: SP:0000019 ! biochemical metabolites [Term] id: SP:0000036 name: hormonal disorder is_a: SP:0000019 ! biochemical metabolites [Term] id: SP:0000037 name: fruit def: "Fruit." [SP:NM] xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0001000 ! Solanaceae phenotype ontology [Term] id: SP:0000038 name: fruit shape def: "The shape of a fruit." [SGN:NM] xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000011 ! fruit morphology [Term] id: SP:0000039 name: fruit shape index def: "Shape ratio." [SGN:EVDK] xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000038 ! fruit shape [Term] id: SP:0000040 name: fruit shape index external def: "Maximum height/maximum width ratio." [SGN:EVDK] synonym: "fruit shape index 1" RELATED [] xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000039 ! fruit shape index [Term] id: SP:0000041 name: leaf width synonym: "TO:0000370" RELATED [] xref: PATO:0000921 xref: PO:0001052 xref: PO:0009025 is_a: SP:0000042 ! leaf size [Term] id: SP:0000042 name: leaf size synonym: "TO:0000542" RELATED [] xref: PATO:0000117 xref: PO:0001052 xref: PO:0009025 is_a: SP:0000004 ! leaf morphology [Term] id: SP:0000044 name: leaf texture xref: PATO:0000150 xref: PO:0001050 xref: PO:0006016 is_a: SP:0000004 ! leaf morphology [Term] id: SP:0000045 name: leaf complexity alt_id: SP:0000043 synonym: "leaf complexity" EXACT [] xref: PATO:0001502 xref: PO:0001050 xref: PO:0009025 is_a: SP:0000004 ! leaf morphology [Term] id: SP:0000046 name: fruit shape index external 2 def: "Midheight/midwidth ratio." [SGN:EVDK] synonym: "fruit shape index 2" RELATED [] xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000039 ! fruit shape index [Term] id: SP:0000047 name: tuber def: "Swollen storage shoot with determinate growth." [POC:curators] xref: PO:0004547 "subterranean tuber" is_a: SP:0000192 ! shoot phenotype [Term] id: SP:0000048 name: shape index internal def: "Internal ellipse height/width ratio." [SGN:EVDK] synonym: "pei" RELATED [] synonym: "pericarp elongation index" RELATED [] xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000039 ! fruit shape index [Term] id: SP:0000049 name: fruit shape triangle def: "Proximal/distal width ratio." [SGN:EVDK] synonym: "tri" RELATED [] xref: PATO:0001875 xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000038 ! fruit shape [Term] id: SP:0000050 name: fruit shape circular def: "Fitting precision R2. How well the boundary of a perfect circle fits the boundary of a fruit." [SGN:EVDK] synonym: "cir" RELATED [] xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000038 ! fruit shape [Term] id: SP:0000051 name: purple leaf xref: PATO:0000951 xref: PO:0001050 xref: PO:0005645 is_a: SP:0000005 ! leaf color [Term] id: SP:0000052 name: white leaf xref: PATO:0000323 xref: PO:0001050 xref: PO:0005645 is_a: SP:0000005 ! leaf color [Term] id: SP:0000053 name: yellow leaf xref: PATO:0000342 xref: PO:0001050 xref: PO:0005645 is_a: SP:0000005 ! leaf color [Term] id: SP:0000054 name: yellow-green leaf xref: PATO:0001941 xref: PO:0001050 xref: PO:0005645 is_a: SP:0000005 ! leaf color [Term] id: SP:0000055 name: dull green/grey leaf xref: PATO:0000950 xref: PO:0001050 xref: PO:0005645 is_a: SP:0000005 ! leaf color [Term] id: SP:0000056 name: dark green leaf xref: PATO:0001249 xref: PO:0001050 xref: PO:0005645 is_a: SP:0000005 ! leaf color [Term] id: SP:0000057 name: leaf variegation synonym: "TO:0000069" RELATED [] xref: PATO:0001533 xref: PO:0001050 xref: PO:0005645 is_a: SP:0000005 ! leaf color [Term] id: SP:0000058 name: fruit shape eccentric def: "The asymmetry of the fruit. Height of internal ellipse / total height." [SGN:EVDK] synonym: "ecc" EXACT [] synonym: "eccenticity" RELATED [] xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000038 ! fruit shape [Term] id: SP:0000059 name: obovoid def: "1/2fOb(y) x Tob. The degree of pear-shapeness." [SGN:EVDK] synonym: "obo" RELATED [] synonym: "obovate" RELATED [] synonym: "pear shape" RELATED [] xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000058 ! fruit shape eccentric [Term] id: SP:0000060 name: ovoid def: "1/2fOv(y) x Tov. The opposite of pear-shapeness." [SGN:EVDK] synonym: "ovate" RELATED [] synonym: "ovo" RELATED [] xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000058 ! fruit shape eccentric [Term] id: SP:0000061 name: flowering timing synonym: "TO:0000344" RELATED [] synonym: "TO:0000366" RELATED [] xref: PATO:0000165 xref: PO:0007016 xref: PO:0009046 is_a: SP:0000006 ! flowering [Term] id: SP:0000062 name: heart shape def: "0.25 x [1/2fOv(y) x Tov] + 20 x [(H_sl + H_sr)/2*H] the degree of heart shapeness." [SGN:EVDK] synonym: "hrt" RELATED [] xref: PATO:0000948 xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000038 ! fruit shape [Term] id: SP:0000063 name: distal eccentricity index def: "Internal ellipse height / height top ellipse-bottom fruit ratio." [SGN:EVDK] synonym: "dec" RELATED [] xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000058 ! fruit shape eccentric [Term] id: SP:0000064 name: proximal eccentricity index def: "internal ellipse height/height bottom ellipse-top fruit ratio ." [SGN:EVDK] synonym: "pec" RELATED [] xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000058 ! fruit shape eccentric [Term] id: SP:0000065 name: horizontal asymmetry def: "[sum|n-ny|]/L. Degree of horizontal asymmetry ." [SGN:EVDK] synonym: "hor" RELATED [] xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000058 ! fruit shape eccentric [Term] id: SP:0000066 name: vertical asymmetry def: "[sum|m-mi|]/L. Degree of vertical asymmetry ." [SGN:EVDK] synonym: "ver" RELATED [] xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000058 ! fruit shape eccentric [Term] id: SP:0000067 name: fruit shape ellipsoid def: "Fitting precision R2. How well the boundary of a perfect ellipse fits the boundary of a fruit." [SGN:EVDK] synonym: "ell" RELATED [] xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000038 ! fruit shape [Term] id: SP:0000068 name: fruit shape rectangular def: "Sin/Sout. The ratio of maximum area inscribing the rectangle to the minimum area of the enclosing rectangle." [PMID:16684933] synonym: "rec" RELATED [] xref: PATO:0001867 xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000038 ! fruit shape [Term] id: SP:0000069 name: fruit end def: "The ends of the fruit." [SGN:EVDK] xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 relationship: part_of SP:0000037 ! fruit [Term] id: SP:0000070 name: distal fruit end shape def: "The shape of the distal end of the fruit." [SGN:EVDK] synonym: "blossom end" RELATED [] xref: PATO:0000052 xref: PATO:0001234 xref: PO:0007010 xref: PO:0007042 xref: PO:0008001 is_a: SP:0000038 ! fruit shape is_a: SP:0000179 ! distal fruit end [Term] id: SP:0000071 name: inflorescence structure xref: PATO:0000141 xref: PO:0001083 xref: PO:0009049 is_a: SP:0000007 ! inflorescence [Term] id: SP:0000072 name: proximal fruit end shape def: "The shape of the proximal end of the fruit." [SGN:EVDK] synonym: "stem end" RELATED [] xref: PATO:0000052 xref: PATO:0001195 xref: PO:0007010 xref: PO:0007042 xref: PO:0008002 is_a: SP:0000038 ! fruit shape is_a: SP:0000180 ! proximal fruit end [Term] id: SP:0000073 name: distal fruit end angle def: "Angle between intersection of two lines representing the slope at the fruit distal end." [SGN:evdk] synonym: "dan" RELATED [] xref: PATO:0000133 xref: PO:0007010 xref: PO:0007042 xref: PO:0008001 is_a: SP:0000070 ! distal fruit end shape [Term] id: SP:0000074 name: proximal fruit end angle def: "Angle between intersection of two lines representing the slope of the proximal fruit end." [SGN:EVDK] synonym: "pan" RELATED [] xref: PATO:0000133 xref: PATO:0001195 xref: PO:0007010 xref: PO:0007042 xref: PO:0008002 is_a: SP:0000072 ! proximal fruit end shape [Term] id: SP:0000075 name: distal fruit end blockiness def: "Distal fruit end width/mid width ratio." [SGN:EVDK] synonym: "dblk" RELATED [] xref: PATO:0001234 xref: PO:0007010 xref: PO:0007042 xref: PO:0008001 is_a: SP:0000070 ! distal fruit end shape [Term] id: SP:0000076 name: distal fruit end indentation def: "Fruit end indented area/total fruit area." [SGN:EVDK] synonym: "diar" RELATED [] xref: PATO:0001234 xref: PO:0007010 xref: PO:0007042 xref: PO:0008001 is_a: SP:0000070 ! distal fruit end shape [Term] id: SP:0000077 name: distal fruit end protrusion def: "Distal fruit end protruded area/total fruit area." [SGN:EVDK] synonym: "nipple tip" RELATED [] xref: PATO:0001234 xref: PO:0007010 xref: PO:0007042 xref: PO:0008001 is_a: SP:0000070 ! distal fruit end shape [Term] id: SP:0000078 name: proximal fruit end blockiness def: "Proximal fruit end proximal end width/mid width ratio." [SGN:EVDK] synonym: "pblk" RELATED [] xref: PATO:0001195 xref: PO:0007010 xref: PO:0007042 xref: PO:0008002 is_a: SP:0000072 ! proximal fruit end shape [Term] id: SP:0000079 name: proximal fruit end indentation def: "Proximal fruit end indented area/total fruit area." [SGN:EVDK] xref: PATO:0001195 xref: PO:0007010 xref: PO:0007042 xref: PO:0008002 is_a: SP:0000072 ! proximal fruit end shape [Term] id: SP:0000080 name: fruit mass def: "The mass of the fruit." [SGN:EVDK] synonym: "fruit weight" RELATED [] synonym: "fw" RELATED [] xref: PATO:0000125 xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 relationship: part_of SP:0000037 ! fruit created_by: naama creation_date: 2008-02-12T03:11:00Z [Term] id: SP:0000081 name: homeotic mutation xref: PO:0007600 xref: PO:0009046 is_a: SP:0000008 ! flower morphology [Term] id: SP:0000082 name: flower organ size xref: PATO:0000117 xref: PO:0007600 xref: PO:0009046 is_a: SP:0000008 ! flower morphology [Term] id: SP:0000083 name: flower organ width xref: PATO:0000921 xref: PO:0007600 xref: PO:0009046 is_a: SP:0000082 ! flower organ size [Term] id: SP:0000084 name: other flower morphology def: "OBSOLETE. Replaced by parent term SP:0000008 flower morphology." [SGN:nm] xref: PO:0007600 is_obsolete: true [Term] id: SP:0000085 name: fruit area def: "The area of the fruit." [SGN:EVDK] xref: PATO:0001323 xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000010 ! fruit size created_by: naama creation_date: 2008-02-12T03:11:00Z [Term] id: SP:0000086 name: fruit length def: "The length of the fruit." [SGN:EVDK] synonym: "fruit height" EXACT [] xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000010 ! fruit size created_by: naama creation_date: 2008-02-12T03:11:00Z [Term] id: SP:0000087 name: fruit perimeter def: "The maximum perimeter of the fruit." [SGN:EVDK] synonym: "fruit circumference" RELATED [] synonym: "per" RELATED [] xref: PATO:0001711 xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000010 ! fruit size created_by: naama creation_date: 2008-02-12T03:11:00Z [Term] id: SP:0000088 name: fruit width def: "The width of the fruit." [SGN:EVDK] synonym: "fd1" RELATED [] synonym: "fruit diameter" RELATED [] xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000010 ! fruit size created_by: naama creation_date: 2008-02-12T03:11:00Z [Term] id: SP:0000089 name: fruit locule number def: "The number of locules in the fruit." [SGN:EVDK] synonym: "lcn" RELATED [] xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000011 ! fruit morphology created_by: naama creation_date: 2008-02-12T03:30:00Z [Term] id: SP:0000090 name: placenta area def: "The area of the placenta." [SGN:EVDK] xref: PO:0004535 xref: PO:0007010 xref: PO:0007042 is_a: SP:0000010 ! fruit size created_by: naama creation_date: 2008-02-13T09:41:00Z [Term] id: SP:0000091 name: white flower xref: PATO:0000323 xref: PO:0007600 xref: PO:0009046 is_a: SP:0000009 ! flower color [Term] id: SP:0000092 name: pale yellow flower xref: PATO:0001264 xref: PO:0007600 xref: PO:0009046 is_a: SP:0000228 ! yellow flower color [Term] id: SP:0000093 name: strong yellow flower xref: PATO:0001263 xref: PO:0007600 xref: PO:0009046 is_a: SP:0000228 ! yellow flower color [Term] id: SP:0000094 name: fruit color uniformity def: "The proportion of the 2D area of the red color epicarp out of the total epicarp area visible from a top view of the proximal fruit end." [SGN:EVDK] xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000012 ! fruit color created_by: naama creation_date: 2008-02-13T10:05:00Z [Term] id: SP:0000095 name: pericarp area def: "The area of the pericarp." [SGN:EVDK] xref: PO:0007010 xref: PO:0007042 xref: PO:0009084 relationship: part_of SP:0000371 ! pericarp created_by: naama creation_date: 2008-02-12T03:36:00Z [Term] id: SP:0000096 name: septum area def: "The sum of the areas of the septum and the pericarp." [SGN:EVDK] xref: PO:0005008 xref: PO:0007010 xref: PO:0007042 is_a: SP:0000010 ! fruit size created_by: naama creation_date: 2008-02-12T03:36:00Z [Term] id: SP:0000097 name: epicarp color xref: PATO:0000014 xref: PO:0007010 xref: PO:0007042 xref: PO:0009085 is_a: SP:0000012 ! fruit color created_by: naama creation_date: 2008-02-12T03:40:00Z [Term] id: SP:0000098 name: mesocarp color xref: PATO:0000014 xref: PO:0007010 xref: PO:0007042 xref: PO:0009087 is_a: SP:0000012 ! fruit color created_by: naama creation_date: 2008-02-12T03:40:00Z [Term] id: SP:0000099 name: endocarp color xref: PATO:0000014 xref: PO:0007010 xref: PO:0007042 xref: PO:0009086 is_a: SP:0000012 ! fruit color created_by: naama creation_date: 2008-02-12T03:40:00Z [Term] id: SP:0000100 name: seed xref: PO:0001170 xref: PO:0009010 is_a: SP:0001000 ! Solanaceae phenotype ontology created_by: naama creation_date: 2008-02-22T10:02:00Z [Term] id: SP:0000101 name: small fruit xref: PATO:0000587 xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000010 ! fruit size [Term] id: SP:0000102 name: large fruit xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000010 ! fruit size [Term] id: SP:0000103 name: fruit lobedness degree def: "Fruit bumpiness index." [SGN:EVDK] synonym: "fruit bumpiness" RELATED [] xref: PATO:0000052 xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000038 ! fruit shape created_by: naama creation_date: 2008-02-22T10:26:00Z [Term] id: SP:0000104 name: seed weight xref: PATO:0000125 xref: PO:0001170 xref: PO:0009010 is_a: SP:0000100 ! seed created_by: naama creation_date: 2008-02-22T10:27:00Z [Term] id: SP:0000105 name: seed number def: "Average number of seeds per fruit." [SGN:EVDK] xref: PATO:0000053 xref: PO:0001170 xref: PO:0009010 is_a: SP:0000100 ! seed created_by: naama creation_date: 2008-02-22T10:27:00Z [Term] id: SP:0000106 name: fruit number xref: PO:0007042 xref: PO:0009001 is_a: SP:0000037 ! fruit is_a: SP:0000198 ! yield created_by: naama creation_date: 2008-02-22T10:28:00Z [Term] id: SP:0000107 name: Percent of fruits with less than 10 seeds xref: PO:0007042 xref: PO:0009001 is_a: SP:0000106 ! fruit number created_by: naama creation_date: 2008-02-22T10:29:00Z [Term] id: SP:0000108 name: leaf xref: PO:0001050 xref: PO:0009025 is_a: SP:0001000 ! Solanaceae phenotype ontology created_by: naama creation_date: 2008-02-22T10:30:00Z [Term] id: SP:0000109 name: leaf number xref: PATO:0000053 xref: PO:0001050 xref: PO:0009025 is_a: SP:0000108 ! leaf created_by: naama creation_date: 2008-02-22T10:30:00Z [Term] id: SP:0000110 name: germination xref: PO:0007057 xref: PO:0009010 is_a: SP:0000001 ! seedling [Term] id: SP:0000111 name: long fruit xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000038 ! fruit shape [Term] id: SP:0000112 name: rounded fruit xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000038 ! fruit shape [Term] id: SP:0000113 name: other fruit morphology xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_obsolete: true [Term] id: SP:0000114 name: number of leaves to 1st inflorescence xref: PATO:0000053 xref: PO:0007047 xref: PO:0009025 is_a: SP:0000109 ! leaf number created_by: naama creation_date: 2008-02-22T10:30:00Z [Term] id: SP:0000115 name: flower xref: PO:0007615 xref: PO:0009046 is_a: SP:0001000 ! Solanaceae phenotype ontology created_by: naama creation_date: 2008-02-22T10:47:00Z [Term] id: SP:0000116 name: number of flowers per inflorescence xref: PATO:0000053 xref: PO:0007615 xref: PO:0009046 is_a: SP:0000007 ! inflorescence is_a: SP:0000117 ! flower number created_by: naama creation_date: 2008-02-22T10:47:00Z [Term] id: SP:0000117 name: flower number synonym: "count" RELATED [] xref: PATO:0000053 xref: PO:0007615 xref: PO:0009046 is_a: SP:0000115 ! flower created_by: naama creation_date: 2008-02-22T10:47:00Z [Term] id: SP:0000118 name: fruit glossiness xref: PO:0007010 xref: PO:0007042 xref: PO:0009085 is_a: SP:0000097 ! epicarp color created_by: naama creation_date: 2008-02-22T10:47:00Z [Term] id: SP:0000119 name: fruit firmness xref: PATO:0000037 xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000013 ! fruit ripening created_by: naama creation_date: 2008-02-22T10:47:00Z [Term] id: SP:0000120 name: seedling lethal xref: PATO:0000718 xref: PO:0000003 xref: PO:0007030 xref: PO:0007131 is_a: SP:0000001 ! seedling [Term] id: SP:0000121 name: yellow fruit xref: PATO:0000324 xref: PO:0007038 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000012 ! fruit color [Term] id: SP:0000122 name: orange fruit xref: PATO:0000953 xref: PO:0007038 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000012 ! fruit color [Term] id: SP:0000123 name: dark red fruit xref: PATO:0001261 xref: PO:0007038 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000012 ! fruit color [Term] id: SP:0000124 name: epicarp texture xref: PO:0007010 xref: PO:0007042 xref: PO:0009085 is_a: SP:0000011 ! fruit morphology [Term] id: SP:0000125 name: green fruit xref: PATO:0000320 xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000012 ! fruit color [Term] id: SP:0000126 name: days to first flowering def: "Opening of third inflorescence after transplanting." [SGN:EVDK] xref: PATO:0000081 xref: PO:0007016 xref: PO:0009046 is_a: SP:0000061 ! flowering timing created_by: naama creation_date: 2008-02-22T03:31:00Z [Term] id: SP:0000127 name: radial fruit cracking xref: PO:0007010 xref: PO:0007042 xref: PO:0009085 is_a: SP:0000124 ! epicarp texture created_by: naama creation_date: 2008-02-22T10:47:00Z [Term] id: SP:0000128 name: plant habit index synonym: "growth habit" RELATED [] synonym: "plant habit " RELATED [] is_a: SP:0000003 ! plant habit created_by: naama creation_date: 2008-02-22T10:47:00Z [Term] id: SP:0000129 name: fruits per flower def: "A measure of how many flowers develop into fruit." [SGN:EVDK] xref: PATO:0000053 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000106 ! fruit number created_by: naama creation_date: 2008-02-22T03:36:00Z [Term] id: SP:0000130 name: slow germination xref: PATO:0001494 xref: PO:0007030 xref: PO:0007057 xref: PO:0009010 is_a: SP:0000110 ! germination [Term] id: SP:0000131 name: early ripe xref: PATO:0000694 xref: PO:0007010 xref: PO:0009001 is_a: SP:0000365 ! fruit ripening timing [Term] id: SP:0000132 name: late ripe xref: PATO:0000502 xref: PO:0007010 xref: PO:0009001 is_a: SP:0000365 ! fruit ripening timing [Term] id: SP:0000133 name: fruit mid-height width xref: PATO:0000921 xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000088 ! fruit width created_by: naama creation_date: 2008-03-12T01:08:00Z [Term] id: SP:0000134 name: fruit widest width synonym: "fruit maximum width" RELATED [] xref: PO:0007010 xref: PO:0007042 xref: PO:9001 is_a: SP:0000088 ! fruit width created_by: naama creation_date: 2008-03-12T01:08:00Z [Term] id: SP:0000135 name: fruit length mid-width synonym: "height mid-width" EXACT [] xref: PATO:0000122 xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000086 ! fruit length created_by: naama creation_date: 2008-03-12T01:11:00Z [Term] id: SP:0000136 name: fruit longest length synonym: "fruit highest height" EXACT [] xref: PATO:0000122 xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000086 ! fruit length created_by: naama creation_date: 2008-03-12T01:11:00Z [Term] id: SP:0000137 name: proximal fruit end blockiness 5% xref: PO:0007010 xref: PO:0007042 xref: PO:0008002 is_a: SP:0000078 ! proximal fruit end blockiness created_by: naama creation_date: 2008-03-12T01:26:00Z [Term] id: SP:0000138 name: proximal fruit end blockiness 10% xref: PO:0007010 xref: PO:0007042 xref: PO:0008002 is_a: SP:0000078 ! proximal fruit end blockiness created_by: naama creation_date: 2008-03-12T01:26:00Z [Term] id: SP:0000139 name: proximal fruit end blockiness 20% xref: PO:0007010 xref: PO:0007042 xref: PO:0008002 is_a: SP:0000078 ! proximal fruit end blockiness created_by: naama creation_date: 2008-03-12T01:26:00Z [Term] id: SP:0000140 name: proximal fruit end blockiness 30% xref: PO:0007010 xref: PO:0007042 xref: PO:0008002 is_a: SP:0000078 ! proximal fruit end blockiness created_by: naama creation_date: 2008-03-12T01:26:00Z [Term] id: SP:0000141 name: partial sterility xref: PO:0007042 xref: PO:0007616 xref: PO:0009046 is_a: SP:0000014 ! sterility [Term] id: SP:0000142 name: full sterility xref: PO:0007042 xref: PO:0007616 xref: PO:0009046 is_a: SP:0000014 ! sterility [Term] id: SP:0000143 name: distal fruit end blockiness 5% xref: PO:0007010 xref: PO:0007042 xref: PO:0008001 is_a: SP:0000075 ! distal fruit end blockiness created_by: naama creation_date: 2008-03-12T01:26:00Z [Term] id: SP:0000144 name: distal fruit end blockiness 10% xref: PO:0007010 xref: PO:0007042 xref: PO:0008001 is_a: SP:0000075 ! distal fruit end blockiness created_by: naama creation_date: 2008-03-12T01:26:00Z [Term] id: SP:0000145 name: distal fruit end blockiness 20% xref: PO:0007010 xref: PO:0007042 xref: PO:0008001 is_a: SP:0000075 ! distal fruit end blockiness created_by: naama creation_date: 2008-03-12T01:26:00Z [Term] id: SP:0000146 name: distal fruit end blockiness 30% xref: PO:0007010 xref: PO:0007042 xref: PO:0008001 is_a: SP:0000075 ! distal fruit end blockiness created_by: naama creation_date: 2008-03-12T01:26:00Z [Term] id: SP:0000147 name: fruit shape triangle 5% xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000049 ! fruit shape triangle created_by: naama creation_date: 2008-03-12T01:27:00Z [Term] id: SP:0000148 name: fruit shape triangle 10% xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000049 ! fruit shape triangle created_by: naama creation_date: 2008-03-12T01:27:00Z [Term] id: SP:0000149 name: fruit shape triangle 20% xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000049 ! fruit shape triangle created_by: naama creation_date: 2008-03-12T01:27:00Z [Term] id: SP:0000150 name: fruit shape triangle 30% xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000049 ! fruit shape triangle created_by: naama creation_date: 2008-03-12T01:27:00Z [Term] id: SP:0000151 name: necrosis xref: PO:0007130 xref: PO:0007134 xref: PO:0009025 is_a: SP:0000015 ! disease and stress response [Term] id: SP:0000152 name: wilting xref: PO:0000003 xref: PO:0007130 xref: PO:0007134 xref: PO:0009025 is_a: SP:0000015 ! disease and stress response [Term] id: SP:0000153 name: other disease response def: "OBSOLETE. Replaced by parent term SP:0000015 (disease and stress response)." [SGN:nm] xref: PO:0000003 xref: PO:0007130 xref: PO:0007134 is_obsolete: true [Term] id: SP:0000154 name: proximal fruit end height synonym: "shoulder height" RELATED [] xref: PATO:0001195 xref: PATO:f0000119 xref: PO:0007010 xref: PO:0007042 xref: PO:0008002 is_a: SP:0000072 ! proximal fruit end shape created_by: naama creation_date: 2008-03-17T01:50:00Z [Term] id: SP:0000155 name: distal angle micro 2% is_a: SP:0000073 ! distal fruit end angle created_by: naama creation_date: 2008-03-25T11:13:00Z [Term] id: SP:0000156 name: distal angle micro 3% is_a: SP:0000073 ! distal fruit end angle created_by: naama creation_date: 2008-03-25T11:13:00Z [Term] id: SP:0000157 name: distal angle micro 5% is_a: SP:0000073 ! distal fruit end angle created_by: naama creation_date: 2008-03-25T11:13:00Z [Term] id: SP:0000158 name: distal angle macro 10% is_a: SP:0000073 ! distal fruit end angle created_by: naama creation_date: 2008-03-25T11:13:00Z [Term] id: SP:0000159 name: distal angle macro 15% is_a: SP:0000073 ! distal fruit end angle created_by: naama creation_date: 2008-03-25T11:13:00Z [Term] id: SP:0000160 name: distal angle macro 20% is_a: SP:0000073 ! distal fruit end angle created_by: naama creation_date: 2008-03-25T11:13:00Z [Term] id: SP:0000161 name: horizontal asymmetry obovoid is_a: SP:0000065 ! horizontal asymmetry created_by: naama creation_date: 2008-03-25T11:17:00Z [Term] id: SP:0000162 name: horizontal asymmetry ovoid is_a: SP:0000065 ! horizontal asymmetry created_by: naama creation_date: 2008-03-25T11:17:00Z [Term] id: SP:0000163 name: distal angle macro 25% is_a: SP:0000073 ! distal fruit end angle created_by: naama creation_date: 2008-03-25T11:19:00Z [Term] id: SP:0000164 name: eccentricity area index def: "Area ellipse / total fruit area." [SGN:EVDK] synonym: "obovate (ellipse)" RELATED [] synonym: "oel" EXACT [] xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000058 ! fruit shape eccentric created_by: naama creation_date: 2008-03-31T10:09:00Z [Term] id: SP:0000165 name: total soluble solids def: "The total soluble solids in the fruit (usually sugars and acids)." [SGN:NM] synonym: "Brix" EXACT [] is_a: SP:0000167 ! fruit metabolites is_a: SP:0000385 ! sugars [Term] id: SP:0000166 name: citric acid def: "Citric acid content in the fruit." [SGN:NM] is_a: SP:0000019 ! biochemical metabolites is_a: SP:0000167 ! fruit metabolites [Term] id: SP:0000167 name: fruit metabolites def: "The metabolites present in the fruit." [SGN:NM] relationship: part_of SP:0000037 ! fruit [Term] id: SP:0000168 name: malic acid def: "Malic acid content in the fruit." [SGN:NM] is_a: SP:0000019 ! biochemical metabolites is_a: SP:0000167 ! fruit metabolites [Term] id: SP:0000169 name: glutamic acid def: "Glutamic acid content." [SGN:NM] is_a: SP:0000019 ! biochemical metabolites is_a: SP:0000167 ! fruit metabolites [Term] id: SP:0000170 name: pH def: "The pH of the fruit." [SGN:NM] is_a: SP:0000167 ! fruit metabolites [Term] id: SP:0000171 name: Total organic acids def: "The total content of organic acids." [SGN:NM] is_a: SP:0000019 ! biochemical metabolites is_a: SP:0000167 ! fruit metabolites [Term] id: SP:0000172 name: total acids def: "The total acid content." [SGN:NM] is_a: SP:0000019 ! biochemical metabolites is_a: SP:0000167 ! fruit metabolites [Term] id: SP:0000173 name: fasciated def: "Fasciated fruit shape. Multipe locules." [SGN:NM] xref: PATO:0000949 is_a: SP:0000038 ! fruit shape [Term] id: SP:0000174 name: determinate def: "Determinate growth of plant branches terminating with an inflorescence." [SGN:NM] is_a: SP:0000128 ! plant habit index [Term] id: SP:0000175 name: semi determinate def: "Semi-determinate growth of plant branches producing more inflorescences than determinate plants, but eventually terminating." [SGN:NM] is_a: SP:0000128 ! plant habit index [Term] id: SP:0000176 name: indeterminate def: "Ineterminate growth of plant branches. Continual twig elongation and bud formation." [SGN:NM] is_a: SP:0000128 ! plant habit index [Term] id: SP:0000177 name: compound leaf xref: PATO:0001504 xref: PO:0001050 xref: PO:0009025 is_a: SP:0000045 ! leaf complexity [Term] id: SP:0000178 name: simple leaf xref: PATO:0001503 xref: PO:0001050 xref: PO:0009025 is_a: SP:0000045 ! leaf complexity [Term] id: SP:0000179 name: distal fruit end def: "The distal end of the fruit (tip)." [SGN:NM] xref: PATO:0001234 is_a: SP:0000069 ! fruit end [Term] id: SP:0000180 name: proximal fruit end def: "The proximal end of the fruit (shoulders)." [SGN:NM] synonym: "shoulders" EXACT [] xref: PATO:0001195 is_a: SP:0000069 ! fruit end [Term] id: SP:0000181 name: distal fruit end color def: "The color of the distal fruit end." [SGN:NM] xref: PATO:0000014 xref: PATO:0001234 is_a: SP:0000012 ! fruit color is_a: SP:0000179 ! distal fruit end [Term] id: SP:0000182 name: proximal fruit end color def: "The color of the proximal fruit end (shoulders)." [SGN:NM] xref: PATO:0000014 xref: PATO:0001195 is_a: SP:0000012 ! fruit color is_a: SP:0000180 ! proximal fruit end [Term] id: SP:0000183 name: leaf veins def: "The leaf vascular tissue." [SGN:NM] xref: PO:0020139 is_a: SP:0000004 ! leaf morphology [Term] id: SP:0000184 name: tuber epidermis def: "Epidermal layer of a tuber." [SGN:NM] synonym: "tuber skin" EXACT [] xref: PO:0025048 "subterranean tuber epidermis" relationship: part_of SP:0000047 ! tuber [Term] id: SP:0000185 name: tuber epidermis color def: "The color of the tuber epidermal layer." [SGN:NM] synonym: "skin color" EXACT [] xref: PATO:0000014 xref: PO:0025048 is_a: SP:0000184 ! tuber epidermis [Term] id: SP:0000186 name: tuber epidermis texture def: "The texture of the tuber epidermal layer." [SGN:NM] synonym: "skin texture" EXACT [] xref: PATO:0000150 xref: PO:0025048 is_a: SP:0000184 ! tuber epidermis [Term] id: SP:0000187 name: tuber flesh def: "The flesh layer of the tuber." [SGN:NM] xref: PO:0025038 "subterranean tuber storage parenchyma" relationship: part_of SP:0000047 ! tuber [Term] id: SP:0000188 name: tuber flesh color def: "The color of the tuber flesh layer." [SGN:NM] xref: PATO:0000014 xref: PO:0025038 relationship: part_of SP:0000187 ! tuber flesh [Term] id: SP:0000189 name: tuber flesh pigment pattern def: "The pattern of pigmentation of the tuber flesh." [SGN:NM] xref: PATO:0000060 xref: PO:0025038 is_a: SP:0000187 ! tuber flesh [Term] id: SP:0000190 name: tuber eye def: "A structure on the tuber surface that can sprout. It also has a significance in determining the processing quality." [SGN:curators] xref: PO:0025042 "A tuber axillary vegetative bud that is part of a subterranean tuber" relationship: part_of SP:0000047 ! tuber [Term] id: SP:0000191 name: tuber eye depth def: "The depth of the tuber eye." [SGN:curators] xref: PATO:0001595 xref: PO:0025042 relationship: part_of SP:0000190 ! tuber eye [Term] id: SP:0000192 name: shoot phenotype def: "Phenotype measured using part of the sporophyte, which is composed of the stems and leaves, and includes shoot apical meristems." [SGN:curators] synonym: "vine phenotype" EXACT [] xref: PO:0009006 is_a: SP:0001000 ! Solanaceae phenotype ontology [Term] id: SP:0000193 name: stem def: "The axial system of plants that bears leaves and buds." [APWeb:Glossary] xref: PO:0007089 xref: PO:0009047 relationship: part_of SP:0000192 ! shoot phenotype [Term] id: SP:0000194 name: erect def: "Erect plant growth habit." [PVP:3] synonym: "upright" EXACT [] xref: PATO:0000622 is_a: SP:0000128 ! plant habit index [Term] id: SP:0000195 name: semi erect def: "Semi erect plant growth habit." [PVP:5] is_a: SP:0000128 ! plant habit index [Term] id: SP:0000196 name: spreading def: "Spreading plant growth habit." [PVP:7] synonym: "horizontal" RELATED [] xref: PATO:0001855 is_a: SP:0000128 ! plant habit index [Term] id: SP:0000197 name: post harvest quality def: "After-harvest quality." [SGN:NM] is_a: SP:0001000 ! Solanaceae phenotype ontology [Term] id: SP:0000198 name: yield def: "The total yield of the harvest." [SGN:NM] is_a: SP:0000197 ! post harvest quality [Term] id: SP:0000199 name: tuber epidermis pigment pattern def: "The pattern of the tuber pigmentation." [SGN:NM] xref: PATO:0000060 xref: PO:0025048 is_a: SP:0000184 ! tuber epidermis [Term] id: SP:0000200 name: tuber morphology def: "The morphological characteristics of the tuber." [SGN:NM] xref: PO:0004547 relationship: part_of SP:0000047 ! tuber [Term] id: SP:0000201 name: tuber shape def: "The shape of the tuber." [SGN:NM] xref: PATO:0000052 xref: PO:0004547 is_a: SP:0000200 ! tuber morphology [Term] id: SP:0000202 name: tuber size def: "The physical size of the tuber." [SGN:NM] xref: PATO:0000117 xref: PO:0004547 is_a: SP:0000200 ! tuber morphology [Term] id: SP:0000203 name: tuber length xref: PATO:0000122 xref: PO:0004547 is_a: SP:0000202 ! tuber size [Term] id: SP:0000204 name: tuber width xref: PATO:0000921 xref: PO:0004547 is_a: SP:0000202 ! tuber size [Term] id: SP:0000205 name: whole plant phenotype def: "A phenotype of the entire plant, including roots, shoots and leaves, at any stage of its life cycle." [SGN:AP] xref: PO:0000003 is_a: SP:0001000 ! Solanaceae phenotype ontology [Term] id: SP:0000206 name: shoot maturity def: "An assessment of the maturity of the shoot (vine)." [SGN:curators] synonym: "potato vine maturity (Potato Cooperators: There is considerable diversity among varieties with respect to how long they grow until they naturally senesce. 95 and 120DAP were chosen so we could evaluate differences among early-maturing varieties (95DAP) and among later maturing varieties (120DAP) )." RELATED [Potato_Cooperators:WSD] synonym: "vine maturity" EXACT [] xref: PATO:0000261 xref: PO:0007112 xref: PO:0009006 is_a: SP:0000192 ! shoot phenotype is_a: SP:0000205 ! whole plant phenotype [Term] id: SP:0000207 name: early shoot maturity def: "An assesment of the shoot at an early stage of maturity." [SGN:curators] synonym: "Potato: 95 days after pollination (95DAP)" RELATED [POtato_Cooperators:WSD] is_obsolete: true [Term] id: SP:0000208 name: mid shoot maturity def: "An assesment of the shoot at a mid stage of maturity." [SGN:curators] is_obsolete: true [Term] id: SP:0000209 name: late shoot maturity def: "An assesment of the shoot at a late stage of maturity." [SGN:curators] synonym: "Potato: 120 days after pollination (120DAP)" RELATED [Potato_Cooperators:WSD] is_obsolete: true [Term] id: SP:0000210 name: shoot maturity 120 DAP def: "Assessment of the shoot maturity 120 days after pollination (DAP)." [potato_cooperators:WDJ] synonym: "potato vine maturity 120 DAP" RELATED [] xref: PATO:0000261 xref: PO:0007112 xref: PO:0009006 is_a: SP:0000206 ! shoot maturity created_by: naamamenda creation_date: 2010-05-14T03:02:56Z [Term] id: SP:0000211 name: shoot maturity 95DAP def: "Assessment of the shoot maturity 95 days after pollination (DAP)." [potato_cooperators:WDJ] synonym: "potato vine maturity 95 DAP" RELATED [] xref: PATO:0000261 xref: PO:0007112 xref: PO:0009006 is_a: SP:0000206 ! shoot maturity created_by: naamamenda creation_date: 2010-05-14T02:59:49Z [Term] id: SP:0000212 name: tuber appearance def: "The overall appearance of the tuber. A 1-9 scale is used, with 1 the lowest score (\"very poor\") and 9 the highest (excellent)." [NE:1014] xref: PO:0004547 is_a: SP:0000200 ! tuber morphology created_by: naamamenda creation_date: 2010-05-14T02:53:14Z [Term] id: SP:0000213 name: tuber height xref: PATO:0000119 xref: PO:0004547 is_a: SP:0000202 ! tuber size created_by: naamamenda creation_date: 2010-05-14T02:51:40Z [Term] id: SP:0000214 name: sucrose def: "Sucrose content in mg/g fresh weight." [SGN:NM] is_a: SP:0000385 ! sugars created_by: Naama creation_date: 2010-05-14T03:59:01Z [Term] id: SP:0000215 name: glucose def: "Glucose content in mg/g fresh weight." [SGN:NM] is_a: SP:0000385 ! sugars created_by: Naama creation_date: 2010-05-14T04:02:11Z [Term] id: SP:0000216 name: tuber mass def: "The mass of the tuber." [SGN:NM] synonym: "tuber weight" RELATED [] xref: PATO:0000125 xref: PO:0004547 relationship: part_of SP:0000047 ! tuber created_by: Naama creation_date: 2010-05-18T11:03:02Z [Term] id: SP:0000217 name: specific gravity def: "Weight in air / (weight in air -weight in water)." [potato_cooperators:WDJ] xref: PO:0004547 relationship: part_of SP:0000080 ! fruit mass relationship: part_of SP:0000216 ! tuber mass created_by: Naama creation_date: 2010-05-18T11:49:44Z [Term] id: SP:0000218 name: specific gravity at harvest def: "Weight in air / (weight in air -weight in water) measured at the time of harvest." [potato_cooperators:WDJ] xref: PO:0004547 is_a: SP:0000217 ! specific gravity created_by: Naama creation_date: 2010-05-18T11:54:44Z [Term] id: SP:0000219 name: specific gravity at storage def: "Weight in air / (weight in air -weight in water) measured at storage." [potato_cooperators:WDJ] xref: PO:0004547 is_a: SP:0000197 ! post harvest quality is_a: SP:0000217 ! specific gravity created_by: Naama creation_date: 2010-05-18T11:54:44Z [Term] id: SP:0000220 name: heat sprout rating def: "A scale to measure the propensity of tubers to sprout in the soil under high temperatures." [potato_cooperators:DSD] is_a: SP:0000197 ! post harvest quality created_by: Naama creation_date: 2010-05-18T12:37:10Z [Term] id: SP:0000221 name: processing quality def: "Quality of processed plant product, typically used by the food industry." [SGN:NM] is_a: SP:0001000 ! Solanaceae phenotype ontology created_by: Naama creation_date: 2010-05-18T12:44:57Z [Term] id: SP:0000222 name: chip color def: "The color of a fried chip." [SGN:NM] xref: PATO:0000014 xref: PO:0025038 is_a: SP:0000221 ! processing quality relationship: part_of SP:0000188 ! tuber flesh color created_by: Naama creation_date: 2010-05-18T12:46:26Z [Term] id: SP:0000223 name: Qualitative color def: "An estimate for the chip color. Scale is 1-5 with 1 being a light colored chip." [potato_cooperators:DSD] xref: PATO:0000014 xref: PO:0025038 is_a: SP:0000222 ! chip color created_by: Naama creation_date: 2010-05-18T12:47:53Z [Term] id: SP:0000224 name: Quantitative color def: "A measurement of the chip color with a colorimeter at a specific wavelength." [potato_cooperators:DSD] xref: PATO:0000014 xref: PO:0025038 is_a: SP:0000222 ! chip color created_by: Naama creation_date: 2010-05-18T12:47:53Z [Term] id: SP:0000225 name: tuber cross section xref: PO:0004547 is_a: SP:0000200 ! tuber morphology created_by: Naama creation_date: 2010-05-19T11:59:39Z [Term] id: SP:0000226 name: tuber epidermis set depth synonym: "tuber skin set depth " RELATED [] xref: PATO:0001595 xref: PO:0025048 is_a: SP:0000184 ! tuber epidermis created_by: Naama creation_date: 2010-05-19T12:04:16Z [Term] id: SP:0000227 name: tuber epidermis texture russet xref: PO:0025048 is_a: SP:0000186 ! tuber epidermis texture created_by: Naama creation_date: 2010-05-24T02:24:59Z [Term] id: SP:0000228 name: yellow flower color xref: PATO:0000324 xref: PO:0007600 xref: PO:0009046 is_a: SP:0000009 ! flower color created_by: Naama creation_date: 2010-05-20T02:33:53Z [Term] id: SP:0000229 name: leaf length synonym: "TO:0000370" RELATED [] xref: PATO:0000122 xref: PO:0001052 xref: PO:0009025 is_a: SP:0000042 ! leaf size created_by: Naama creation_date: 2010-05-22T01:59:28Z [Term] id: SP:0000230 name: compound inflorescence xref: PATO:0001504 xref: PO:0001083 xref: PO:0009049 is_a: SP:0000071 ! inflorescence structure created_by: Naama creation_date: 2010-05-22T02:08:21Z [Term] id: SP:0000231 name: shoot maturity very early def: "Vine 100% dead" [potato_cooperators:1] is_a: SP:0000210 ! shoot maturity 120 DAP is_a: SP:0000211 ! shoot maturity 95DAP created_by: Naama creation_date: 2010-05-25T01:30:26Z [Term] id: SP:0000232 name: shoot maturity early def: "Vine starting to senesce (yellowing evident)." [potato_cooperators:4] is_a: SP:0000210 ! shoot maturity 120 DAP is_a: SP:0000211 ! shoot maturity 95DAP created_by: Naama creation_date: 2010-05-25T01:29:01Z [Term] id: SP:0000233 name: tuber thickness xref: PATO:0000915 xref: PO:0004547 xref: PVP:5 is_a: SP:0000202 ! tuber size created_by: Naama creation_date: 2010-05-19T01:14:50Z [Term] id: SP:0000234 name: simple inflorescence xref: PATO:0001503 xref: PO:0001083 xref: PO:0009049 is_a: SP:0000071 ! inflorescence structure created_by: Naama creation_date: 2010-05-22T02:08:21Z [Term] id: SP:0000235 name: decumbent is_a: SP:0000128 ! plant habit index created_by: Naama creation_date: 2010-05-24T12:11:36Z [Term] id: SP:0000236 name: plant canopy is_a: SP:0000003 ! plant habit created_by: Naama creation_date: 2010-05-24T12:13:17Z [Term] id: SP:0000237 name: poor canopy is_a: SP:0000236 ! plant canopy created_by: Naama creation_date: 2010-05-24T12:13:59Z [Term] id: SP:0000238 name: fair canopy is_a: SP:0000236 ! plant canopy created_by: Naama creation_date: 2010-05-24T12:13:59Z [Term] id: SP:0000239 name: good canopy is_a: SP:0000236 ! plant canopy created_by: Naama creation_date: 2010-05-24T12:13:59Z [Term] id: SP:0000240 name: tuber epidermis texture netted def: "Netted skin texture." [NE1014:5] xref: PATO:0001947 xref: PO:0025048 is_a: SP:0000186 ! tuber epidermis texture created_by: Naama creation_date: 2010-05-24T02:24:59Z [Term] id: SP:0000241 name: tuber epidermis texture smooth def: "Smooth skin texture." [NE1014:8] xref: PATO:0000701 xref: PO:0025048 is_a: SP:0000186 ! tuber epidermis texture created_by: Naama creation_date: 2010-05-24T02:24:59Z [Term] id: SP:0000242 name: tuber epidermis texture slight net def: "Slight net skin texture." [NE1014:6] xref: PATO:0001947 xref: PO:0025048 is_a: SP:0000240 ! tuber epidermis texture netted created_by: Naama creation_date: 2010-05-24T02:25:04Z [Term] id: SP:0000243 name: partial russet def: "Partial russet skin texture." [NE1014:1] xref: PO:0025048 is_a: SP:0000227 ! tuber epidermis texture russet created_by: Naama creation_date: 2010-05-24T02:27:57Z [Term] id: SP:0000244 name: heavy russet def: "Heavy russet skin texture." [NE1014:2] xref: PO:0025048 is_a: SP:0000227 ! tuber epidermis texture russet created_by: Naama creation_date: 2010-05-24T02:27:57Z [Term] id: SP:0000245 name: moderate russet def: "Moderate russet skin texture." [NE1014:3] xref: PO:0025048 is_a: SP:0000227 ! tuber epidermis texture russet created_by: Naama creation_date: 2010-05-24T02:27:57Z [Term] id: SP:0000246 name: light russet def: "Light russet skin texture." [NE1014:4] xref: PO:0025048 is_a: SP:0000227 ! tuber epidermis texture russet created_by: Naama creation_date: 2010-05-24T02:27:57Z [Term] id: SP:0000247 name: tuber epidermis texture moderately smooth def: "Moderately smooth skin texture." [NE1014:7] xref: PATO:0000701 xref: PO:0025048 is_a: SP:0000241 ! tuber epidermis texture smooth created_by: Naama creation_date: 2010-05-24T02:46:16Z [Term] id: SP:0000248 name: tuber epidermis texture very smooth def: "Very smooth skin texture." [NE1014:9] xref: PATO:0000701 xref: PO:0025048 is_a: SP:0000241 ! tuber epidermis texture smooth created_by: Naama creation_date: 2010-05-24T02:46:16Z [Term] id: SP:0000249 name: tuber cross section vary flat xref: NE1014:1 xref: PO:0004547 is_a: SP:0000225 ! tuber cross section created_by: Naama creation_date: 2010-05-24T03:10:05Z [Term] id: SP:0000250 name: tuber cross section flat xref: NE1014:3 xref: PO:0004547 is_a: SP:0000225 ! tuber cross section created_by: Naama creation_date: 2010-05-24T03:10:05Z [Term] id: SP:0000251 name: tuber cross section intermediate/oval xref: NE1014:5 xref: PO:0004547 is_a: SP:0000225 ! tuber cross section created_by: Naama creation_date: 2010-05-24T03:10:05Z [Term] id: SP:0000252 name: tuber cross section mostly round xref: NE1014:7 xref: PO:0004547 is_a: SP:0000225 ! tuber cross section created_by: Naama creation_date: 2010-05-24T03:10:05Z [Term] id: SP:0000253 name: tuber cross section round xref: NE1014:8 xref: PO:0004547 is_a: SP:0000225 ! tuber cross section created_by: Naama creation_date: 2010-05-24T03:10:05Z [Term] id: SP:0000254 name: tuber cross section very round xref: NE1014:9 xref: PO:0004547 is_a: SP:0000225 ! tuber cross section created_by: Naama creation_date: 2010-05-24T03:10:05Z [Term] id: SP:0000255 name: skin set depth very poor xref: NE1014:1 xref: PO:0025048 is_a: SP:0000226 ! tuber epidermis set depth created_by: Naama creation_date: 2010-05-24T03:14:57Z [Term] id: SP:0000256 name: skin set depth poor xref: NE1014:3 xref: PO:0025048 is_a: SP:0000226 ! tuber epidermis set depth created_by: Naama creation_date: 2010-05-24T03:14:57Z [Term] id: SP:0000257 name: skin set depth fair xref: NE1014:5 xref: PO:0025048 is_a: SP:0000226 ! tuber epidermis set depth created_by: Naama creation_date: 2010-05-24T03:14:57Z [Term] id: SP:0000258 name: skin set depth good xref: NE1014:7 xref: PO:0025048 is_a: SP:0000226 ! tuber epidermis set depth created_by: Naama creation_date: 2010-05-24T03:14:57Z [Term] id: SP:0000259 name: skin set depth excellent xref: NE1014:9 xref: PO:0025048 is_a: SP:0000226 ! tuber epidermis set depth created_by: Naama creation_date: 2010-05-24T03:14:57Z [Term] id: SP:0000260 name: tuber size small def: "Small tuber size." [NE1014:1] xref: PATO:0000587 xref: PO:0004547 is_a: SP:0000322 ! tuber size index created_by: Naama creation_date: 2010-05-25T12:38:06Z [Term] id: SP:0000261 name: tuber size small-medium def: "Small-medium tuber size." [NE1014:3] xref: PATO:0000587 xref: PO:0004547 is_a: SP:0000322 ! tuber size index created_by: Naama creation_date: 2010-05-25T12:38:06Z [Term] id: SP:0000262 name: tuber size medium def: "Medium tuber size." [NE1014:5] xref: PO:0004547 is_a: SP:0000322 ! tuber size index created_by: Naama creation_date: 2010-05-25T12:38:06Z [Term] id: SP:0000263 name: tuber size medium-large def: "Medium-large tuber size." [NE1014:7] xref: PATO:0000586 xref: PO:0004547 is_a: SP:0000322 ! tuber size index created_by: Naama creation_date: 2010-05-25T12:38:06Z [Term] id: SP:0000264 name: tuber size large def: "Large tuber size." [NE1014:9] xref: PATO:0000586 xref: PO:0004547 is_a: SP:0000322 ! tuber size index created_by: Naama creation_date: 2010-05-25T12:38:06Z [Term] id: SP:0000265 name: tuber appearance very poor def: "Very poor tuber appearance." [NE1014:1] xref: PO:0004547 is_a: SP:0000212 ! tuber appearance created_by: Naama creation_date: 2010-05-25T01:09:49Z [Term] id: SP:0000266 name: tuber appearance poor def: "Poor tuber appearance." [NE1014:3] xref: PO:0004547 is_a: SP:0000212 ! tuber appearance created_by: Naama creation_date: 2010-05-25T01:10:08Z [Term] id: SP:0000267 name: tuber appearance fair def: "Fair tuber appearance." [NE1014:5] xref: PO:0004547 is_a: SP:0000212 ! tuber appearance created_by: Naama creation_date: 2010-05-25T01:10:27Z [Term] id: SP:0000268 name: tuber appearance good def: "Good tuber appearance." [NE1014:7] xref: PO:0004547 is_a: SP:0000212 ! tuber appearance created_by: Naama creation_date: 2010-05-25T01:10:43Z [Term] id: SP:0000269 name: tuber appearance excellent xref: NE1014:9 xref: PO:0004547 is_a: SP:0000212 ! tuber appearance created_by: Naama creation_date: 2010-05-25T01:10:59Z [Term] id: SP:0000270 name: shoot maturity mid-season def: "Green vine, done flowering." [potato_cooperators:6] is_a: SP:0000210 ! shoot maturity 120 DAP is_a: SP:0000211 ! shoot maturity 95DAP created_by: Naama creation_date: 2010-05-25T01:31:19Z [Term] id: SP:0000271 name: shoot maturity late def: "Green Vine; Some flowers yet in bloom." [potato_cooperators:7] is_a: SP:0000210 ! shoot maturity 120 DAP is_a: SP:0000211 ! shoot maturity 95DAP created_by: Naama creation_date: 2010-05-25T01:31:45Z [Term] id: SP:0000272 name: shoot maturity very late def: "Full bloom with buds evident as well." [potato_cooperators:9] is_a: SP:0000210 ! shoot maturity 120 DAP is_a: SP:0000211 ! shoot maturity 95DAP created_by: Naama creation_date: 2010-05-25T01:32:07Z [Term] id: SP:0000273 name: tuber skin color white xref: PATO:0000323 xref: PO:0025048 xref: PVP:1 is_a: SP:0000185 ! tuber epidermis color created_by: Naama creation_date: 2010-05-25T01:45:53Z [Term] id: SP:0000274 name: tuber skin color light yellow xref: PATO:0001264 xref: PO:0025048 xref: PVP:3 is_a: SP:0000185 ! tuber epidermis color created_by: Naama creation_date: 2010-05-25T01:46:14Z [Term] id: SP:0000275 name: tuber skin color yellow xref: PATO:0000324 xref: PO:0025048 xref: PVP:3 is_a: SP:0000185 ! tuber epidermis color created_by: Naama creation_date: 2010-05-25T01:47:11Z [Term] id: SP:0000276 name: tuber skin color pale yellow synonym: "buff" RELATED [] xref: PATO:0001286 xref: PO:0025048 xref: PVP:4 is_a: SP:0000185 ! tuber epidermis color created_by: Naama creation_date: 2010-05-25T03:06:13Z [Term] id: SP:0000277 name: tuber skin color pale brown synonym: "tan" RELATED [] xref: PATO:0001268 xref: PO:0025048 xref: PVP:5 is_a: SP:0000185 ! tuber epidermis color created_by: Naama creation_date: 2010-05-25T03:07:50Z [Term] id: SP:0000278 name: tuber skin color brown xref: PATO:0000952 xref: PO:0025048 xref: PVP:6 is_a: SP:0000185 ! tuber epidermis color created_by: Naama creation_date: 2010-05-25T03:09:11Z [Term] id: SP:0000279 name: tuber skin color pink xref: PATO:0000954 xref: PO:0025048 xref: PVP:7 is_a: SP:0000185 ! tuber epidermis color created_by: Naama creation_date: 2010-05-25T03:09:57Z [Term] id: SP:0000280 name: tuber skin color red xref: PATO:0000322 xref: PO:0025048 xref: PVP:8 is_a: SP:0000185 ! tuber epidermis color created_by: Naama creation_date: 2010-05-25T03:10:27Z [Term] id: SP:0000281 name: tuber skin color maroon synonym: "purplish red " RELATED [] xref: PATO:0001426 xref: PO:0025048 xref: PVP:9 is_a: SP:0000185 ! tuber epidermis color created_by: Naama creation_date: 2010-05-25T03:10:54Z [Term] id: SP:0000282 name: tuber skin color purple xref: PATO:0000951 xref: PO:0025048 xref: PVP:10 is_a: SP:0000185 ! tuber epidermis color created_by: Naama creation_date: 2010-05-25T03:13:00Z [Term] id: SP:0000283 name: tuber skin color dark purple xref: PATO:0001259 xref: PO:0025048 xref: PVP:11 is_a: SP:0000185 ! tuber epidermis color created_by: Naama creation_date: 2010-05-25T03:14:06Z [Term] id: SP:0000284 name: tuber thickness round xref: PO:0004547 xref: PVP:1 is_a: SP:0000233 ! tuber thickness created_by: Naama creation_date: 2010-05-25T03:17:39Z [Term] id: SP:0000285 name: tuber thickness medium xref: PO:0004547 xref: PVP:2 is_a: SP:0000233 ! tuber thickness created_by: Naama creation_date: 2010-05-25T03:19:04Z [Term] id: SP:0000286 name: tuber thickness slightly flattened xref: PO:0004547 xref: PVP:3 is_a: SP:0000233 ! tuber thickness created_by: Naama creation_date: 2010-05-25T03:19:19Z [Term] id: SP:0000287 name: tuber thickness flattened xref: PO:0004547 xref: PVP:4 is_a: SP:0000233 ! tuber thickness created_by: Naama creation_date: 2010-05-25T03:19:41Z [Term] id: SP:0000288 name: tuber flesh color brown xref: PATO:0000952 xref: PO:0025038 xref: PVP:6 is_a: SP:0000188 ! tuber flesh color created_by: Naama creation_date: 2010-05-25T03:22:15Z [Term] id: SP:0000289 name: tuber flesh color light yellow xref: PATO:0001264 xref: PO:0025038 xref: PVP:2 is_a: SP:0000188 ! tuber flesh color created_by: Naama creation_date: 2010-05-25T11:01:55Z [Term] id: SP:0000290 name: tuber flesh color maroon synonym: "purplish red " RELATED [] xref: PATO:0001426 xref: PO:0025038 xref: PVP:9 is_a: SP:0000188 ! tuber flesh color created_by: Naama creation_date: 2010-05-25T11:02:30Z [Term] id: SP:0000291 name: tuber flesh color pale brown synonym: "tan" RELATED [] xref: PATO:0001268 xref: PO:0025038 xref: PVP:5 is_a: SP:0000188 ! tuber flesh color created_by: Naama creation_date: 2010-05-25T11:03:05Z [Term] id: SP:0000292 name: tuber flesh color dark purple xref: PATO:0001259 xref: PO:0025038 xref: PVP:11 is_a: SP:0000188 ! tuber flesh color created_by: Naama creation_date: 2010-05-25T11:03:46Z [Term] id: SP:0000293 name: tuber flesh color purple xref: PATO:0000951 xref: PO:0025038 xref: PVP:10 is_a: SP:0000188 ! tuber flesh color created_by: Naama creation_date: 2010-05-25T11:05:33Z [Term] id: SP:0000294 name: tuber flesh color pale yellow synonym: "buff" RELATED [] xref: PATO:0001286 xref: PO:0025038 xref: PVP:4 is_a: SP:0000188 ! tuber flesh color created_by: Naama creation_date: 2010-05-25T11:06:29Z [Term] id: SP:0000295 name: tuber flesh color pink xref: PATO:0000954 xref: PVP:7 is_a: SP:0000188 ! tuber flesh color created_by: Naama creation_date: 2010-05-25T11:07:00Z [Term] id: SP:0000296 name: tuber flesh color red xref: PATO:0000322 xref: PO:0025038 xref: PVP:8 is_a: SP:0000188 ! tuber flesh color created_by: Naama creation_date: 2010-05-25T11:07:47Z [Term] id: SP:0000297 name: tuber flesh color white xref: PATO:0000323 xref: PO:0025038 xref: PVP:1 is_a: SP:0000188 ! tuber flesh color created_by: Naama creation_date: 2010-05-25T11:08:41Z [Term] id: SP:0000298 name: tuber flesh color yellow xref: PATO:0000324 xref: PO:0025038 xref: PVP:3 is_a: SP:0000188 ! tuber flesh color created_by: Naama creation_date: 2010-05-25T11:09:32Z [Term] id: SP:0000299 name: tuber eye depth protruding def: "Protruding tuber eyes." [PVP:1] xref: PATO:0001598 xref: PO:0025042 is_a: SP:0000191 ! tuber eye depth created_by: Naama creation_date: 2010-05-25T11:44:29Z [Term] id: SP:0000300 name: tuber eye depth shallow def: "Shallow tuber eyes." [PVP:3] xref: PATO:0001692 xref: PO:0025042 is_a: SP:0000191 ! tuber eye depth created_by: Naama creation_date: 2010-05-26T10:36:18Z [Term] id: SP:0000301 name: tuber eye depth intermediate def: "Intermediate tuber eye depth." [PVP:5] xref: PATO:0001596 xref: PO:0025042 is_a: SP:0000191 ! tuber eye depth created_by: Naama creation_date: 2010-05-26T10:37:14Z [Term] id: SP:0000302 name: tuber eye depth deep def: "Deep tuber eyes." [PVP:7] xref: PATO:0001666 xref: PO:0025042 is_a: SP:0000191 ! tuber eye depth created_by: Naama creation_date: 2010-05-26T10:38:50Z [Term] id: SP:0000303 name: tuber eye depth very deep def: "Very deep tuber eyes." [PVP:9] xref: PATO:0001666 xref: PO:0025042 is_a: SP:0000191 ! tuber eye depth created_by: Naama creation_date: 2010-05-26T10:39:15Z [Term] id: SP:0000304 name: heat sprout rating swollen eyes xref: potato_cooperators:2 is_a: SP:0000220 ! heat sprout rating created_by: Naama creation_date: 2010-05-26T10:52:46Z [Term] id: SP:0000305 name: heat sprout rating sprouts caliber 1/4 inch xref: potato_cooperators:3 is_a: SP:0000220 ! heat sprout rating created_by: Naama creation_date: 2010-05-26T10:53:40Z [Term] id: SP:0000306 name: heat sprout rating sprouts caliber 1/2 inch xref: potato_cooperators:4 is_a: SP:0000220 ! heat sprout rating created_by: Naama creation_date: 2010-05-26T10:54:11Z [Term] id: SP:0000307 name: heat sprout rating sprouts caliber 1 inch xref: potato_cooperators:5 is_a: SP:0000220 ! heat sprout rating created_by: Naama creation_date: 2010-05-26T10:54:25Z [Term] id: SP:0000308 name: heat sprout rating sprouts caliber 2 inches xref: potato_cooperators:6 is_a: SP:0000220 ! heat sprout rating created_by: Naama creation_date: 2010-05-26T10:54:42Z [Term] id: SP:0000309 name: heat sprout rating sprouts caliber 3 inches xref: potato_cooperators:7 is_a: SP:0000220 ! heat sprout rating created_by: Naama creation_date: 2010-05-26T10:55:00Z [Term] id: SP:0000310 name: heat sprout rating chain tubers xref: potato_cooperators:9 is_a: SP:0000220 ! heat sprout rating created_by: Naama creation_date: 2010-05-26T10:55:25Z [Term] id: SP:0000311 name: tuber epidermis pigment pattern eyes def: "Tuber skin pigment pattern has eyes. See potato cooperators guide Figure 13." [potato_cooperators:fig13] xref: PO:0025048 xref: potato_cooperators:1 is_a: SP:0000199 ! tuber epidermis pigment pattern created_by: Naama creation_date: 2010-05-26T10:57:25Z [Term] id: SP:0000312 name: tuber epidermis pigment pattern eyebrows def: "Tuber skin pigment pattern has eyebrows. See potato cooperators guide Figure 13." [potato_cooperators:fig13] xref: PO:0025048 xref: potato_cooperators:2 is_a: SP:0000199 ! tuber epidermis pigment pattern created_by: Naama creation_date: 2010-05-26T10:59:31Z [Term] id: SP:0000313 name: tuber epidermis pigment pattern splashed def: "Tuber skin pigment pattern is splashed. See potato cooperators guide Figure 13." [potato_cooperators:fig13] xref: PO:0025048 xref: potato_cooperators:3 is_a: SP:0000199 ! tuber epidermis pigment pattern created_by: Naama creation_date: 2010-05-26T11:06:50Z [Term] id: SP:0000314 name: tuber epidermis pigment pattern scattered def: "Tuber skin pigment pattern is scattered See potato cooperators guide Figure 13." [potato_cooperators:fig13] xref: PO:0025048 xref: potato_cooperators:4 is_a: SP:0000199 ! tuber epidermis pigment pattern created_by: Naama creation_date: 2010-05-26T11:08:01Z [Term] id: SP:0000315 name: tuber epidermis pigment pattern spectacled def: "Tuber skin pigment pattern is scattered See potato cooperators guide Figure 13." [potato_cooperators:fig13] xref: PO:0025048 xref: potato_cooperators:5 is_a: SP:0000199 ! tuber epidermis pigment pattern created_by: Naama creation_date: 2010-05-26T11:08:25Z [Term] id: SP:0000316 name: tuber epidermis pigment pattern stippled def: "Tuber skin pigment pattern is stippled See potato cooperators guide Figure 13." [potato_cooperators:fig13] xref: PO:0025048 xref: potato_cooperators:6 is_a: SP:0000199 ! tuber epidermis pigment pattern created_by: Naama creation_date: 2010-05-26T11:10:42Z [Term] id: SP:0000317 name: tuber shape compressed def: "Compressed shape. See potato cooperators guide, Figure 14." [potato_cooperators:fig14] xref: PATO:0001840 xref: PO:0004547 xref: potato_cooperators:1 is_a: SP:0000201 ! tuber shape created_by: Naama creation_date: 2010-05-26T12:18:26Z [Term] id: SP:0000318 name: tuber shape round def: "Round shape. See potato cooperators guide, Figure 14." [potato_cooperators:fig14] xref: PATO:0000411 xref: PO:0004547 xref: potato_cooperators:2 is_a: SP:0000201 ! tuber shape created_by: Naama creation_date: 2010-05-26T12:23:21Z [Term] id: SP:0000319 name: tuber shape oval def: "Oval shape. See potato cooperators guide, Figure 14." [potato_cooperators:fig14] synonym: "ovate" RELATED [] xref: PATO:0001891 xref: PO:0004547 xref: potato_cooperators:3 is_a: SP:0000201 ! tuber shape created_by: Naama creation_date: 2010-05-26T12:25:26Z [Term] id: SP:0000320 name: tuber shape long def: "Long tuber shape. See potato cooperators guide, Figure 14." [potato_cooperators:fig14] xref: PO:0004547 xref: potato_cooperators:5 is_a: SP:0000201 ! tuber shape created_by: Naama creation_date: 2010-05-26T12:26:01Z [Term] id: SP:0000321 name: tuber shape oblong def: "Elongated tuber shape. See potato cooperators guide, Figure 14." [potato_cooperators:fig14] xref: PATO:0000946 xref: PO:0004547 xref: potato_cooperators:4 is_a: SP:0000201 ! tuber shape created_by: Naama creation_date: 2010-05-26T12:26:59Z [Term] id: SP:0000322 name: tuber size index xref: PO:0004547 is_a: SP:0000202 ! tuber size created_by: Naama creation_date: 2010-05-26T03:32:52Z [Term] id: SP:0000323 name: heat sprout rating none xref: potato_cooperators:1 is_a: SP:0000220 ! heat sprout rating created_by: Naama creation_date: 2010-05-28T02:26:47Z [Term] id: SP:0000324 name: heat sprout rating new top growth xref: potato_cooperators:8 is_a: SP:0000220 ! heat sprout rating created_by: Naama creation_date: 2010-05-28T02:30:09Z [Term] id: SP:0000325 name: shoot maturity very early 2 def: "Between very early and early." [potato_cooperators:2] is_a: SP:0000211 ! shoot maturity 95DAP is_a: SP:0000231 ! shoot maturity very early created_by: Naama creation_date: 2010-06-02T01:34:00Z [Term] id: SP:0000326 name: shoot maturity very early 3 def: "Between very early and early." [potato_cooperators:3] is_a: SP:0000211 ! shoot maturity 95DAP is_a: SP:0000231 ! shoot maturity very early created_by: Naama creation_date: 2010-06-02T01:35:11Z [Term] id: SP:0000327 name: shoot maturity mid-season 5 def: "Between early and mid-season." [potato_cooperators:5] is_a: SP:0000211 ! shoot maturity 95DAP is_a: SP:0000270 ! shoot maturity mid-season created_by: Naama creation_date: 2010-06-02T01:41:17Z [Term] id: SP:0000328 name: shoot maturity late 8 def: "Between late and very late." [potato_cooperators:8] is_a: SP:0000211 ! shoot maturity 95DAP is_a: SP:0000271 ! shoot maturity late created_by: Naama creation_date: 2010-06-02T01:41:57Z [Term] id: SP:0000329 name: erect 1 def: "Erect plant growth habit. close to 90 degrees." [PVP:1] synonym: "upright" EXACT [] xref: PATO:0000622 is_a: SP:0000194 ! erect created_by: Naama creation_date: 2010-06-02T01:44:31Z [Term] id: SP:0000330 name: erect 2 def: "Erect plant growth habit. Between 90-45 degrees" [PVP:2] synonym: "upright" EXACT [] xref: PATO:0000622 is_a: SP:0000194 ! erect created_by: Naama creation_date: 2010-06-02T01:45:17Z [Term] id: SP:0000331 name: semi-erect 4 def: "Semi-erect plant growth habit. 45 degrees." [PVP:4] synonym: "upright" EXACT [] xref: PATO:0000622 is_a: SP:0000195 ! semi erect created_by: Naama creation_date: 2010-06-02T01:47:35Z [Term] id: SP:0000332 name: spreading 6 def: "Spreading plant growth habit. Less than 30 degrees" [PVP:6] synonym: "upright" EXACT [] xref: PATO:0001855 is_a: SP:0000196 ! spreading created_by: Naama creation_date: 2010-06-02T01:49:13Z [Term] id: SP:0000333 name: spreading 8 def: "Spreading plant growth habit. Less than 15 degrees" [PVP:8] synonym: "upright" EXACT [] xref: PATO:0001855 is_a: SP:0000196 ! spreading created_by: Naama creation_date: 2010-06-02T01:51:05Z [Term] id: SP:0000334 name: spreading 9 def: "Spreading plant growth habit. Zero degrees." [PVP:9] synonym: "upright" EXACT [] xref: PATO:0001855 is_a: SP:0000196 ! spreading created_by: Naama creation_date: 2010-06-02T01:51:45Z [Term] id: SP:0000335 name: tuber size small 2 def: "Small to small-medium tuber size." [NE1014:2] xref: PATO:0000587 xref: PO:0004547 is_a: SP:0000260 ! tuber size small created_by: Naama creation_date: 2010-06-02T11:13:04Z [Term] id: SP:0000336 name: tuber size small 4 def: "Small-medium to medium tuber size." [NE1014:4] xref: PATO:0000587 xref: PO:0004547 is_a: SP:0000261 ! tuber size small-medium created_by: Naama creation_date: 2010-06-02T11:13:58Z [Term] id: SP:0000337 name: tuber size medium 6 def: "Medium to medium-large tuber size." [NE1014:6] xref: PO:0004547 is_a: SP:0000262 ! tuber size medium created_by: Naama creation_date: 2010-06-02T11:14:57Z [Term] id: SP:0000338 name: tuber size medium-large 8 def: "Medium-large to large tuber size." [NE1014:8] xref: PATO:0000586 xref: PO:0004547 is_a: SP:0000263 ! tuber size medium-large created_by: Naama creation_date: 2010-06-02T11:16:02Z [Term] id: SP:0000339 name: tuber appearance very poor 2 def: "Very poor to poor tuber appearance." [NE1014:2] xref: PO:0004547 is_a: SP:0000265 ! tuber appearance very poor created_by: Naama creation_date: 2010-06-04T02:39:11Z [Term] id: SP:0000340 name: tuber appearance good 8 def: "Good to excellent tuber appearance." [NE1014:8] xref: PO:0004547 is_a: SP:0000268 ! tuber appearance good created_by: Naama creation_date: 2010-06-04T02:40:33Z [Term] id: SP:0000341 name: tuber appearance poor 4 def: "Poor to fair tuber appearance." [NE1014:4] xref: PO:0004547 is_a: SP:0000266 ! tuber appearance poor created_by: Naama creation_date: 2010-06-04T02:40:54Z [Term] id: SP:0000342 name: tuber appearance fair 6 def: "Fair to good tuber appearance." [NE1014:6] xref: PO:0004547 is_a: SP:0000267 ! tuber appearance fair created_by: Naama creation_date: 2010-06-04T02:42:42Z [Term] id: SP:0000343 name: hypocotyl xref: PO:0007043 relationship: part_of SP:0000001 ! seedling created_by: Naama creation_date: 2010-07-15T03:19:16Z [Term] id: SP:0000344 name: hypocotyl anthocyanin content is_a: SP:0000016 ! anthocyanin content relationship: part_of SP:0000343 ! hypocotyl created_by: Naama creation_date: 2010-07-15T03:25:42Z [Term] id: SP:0000345 name: titratable acids def: "Grams of citric acid per 100ml. Method for measuring is NaOH titration." [SolCAP:DF] is_a: SP:0000166 ! citric acid created_by: Naama creation_date: 2010-07-15T03:39:19Z [Term] id: SP:0000346 name: fruit color uniformity external def: "The proportion of the 2D area of the red color epicarp out of the total epicarp area visible from a top view of the proximal fruit end." [SGN:EVDK] synonym: "epicarp color uniformity" EXACT [SGN:NM] is_a: SP:0000094 ! fruit color uniformity is_a: SP:0000097 ! epicarp color created_by: Naama creation_date: 2010-07-15T03:45:08Z [Term] id: SP:0000347 name: fruit color uniformity internal is_a: SP:0000094 ! fruit color uniformity is_a: SP:0000099 ! endocarp color created_by: Naama creation_date: 2010-07-15T03:47:35Z [Term] id: SP:0000348 name: internal color uniformity cross section synonym: "internal color uniformity latitudinal cross section" RELATED [SGN:NM] is_a: SP:0000347 ! fruit color uniformity internal created_by: Naama creation_date: 2010-07-15T03:52:29Z [Term] id: SP:0000349 name: internal color uniformity longitudinal is_a: SP:0000347 ! fruit color uniformity internal created_by: Naama creation_date: 2010-07-15T03:52:29Z [Term] id: SP:0000350 name: fruit color uniformity cross section percent red def: "Percentage of surface area with hue angle between 0-50 on a 0-360 scale." [SGN:DF] is_a: SP:0000348 ! internal color uniformity cross section created_by: Naama creation_date: 2010-07-15T04:00:40Z [Term] id: SP:0000351 name: fruit color uniformity cross section percent yellow def: "Percentage of surface area with hue angle between 70-100 on a 0-360 scale." [SGN:DF] is_a: SP:0000348 ! internal color uniformity cross section created_by: Naama creation_date: 2010-07-15T04:00:40Z [Term] id: SP:0000352 name: Cross section average RGB red def: "Measurement of the color red of the cross section on RGB scale." [SGN:DF] is_a: SP:0000353 ! endocarp cross section color created_by: Naama creation_date: 2010-07-15T04:07:07Z [Term] id: SP:0000353 name: endocarp cross section color is_a: SP:0000099 ! endocarp color created_by: Naama creation_date: 2010-07-15T04:10:25Z [Term] id: SP:0000354 name: endocarp longitudinal section is_a: SP:0000099 ! endocarp color created_by: Naama creation_date: 2010-07-15T04:10:25Z [Term] id: SP:0000355 name: Cross section average RGB green def: "Measurement of the color green of the cross section on RGB scale." [SGN:DF] is_a: SP:0000353 ! endocarp cross section color created_by: Naama creation_date: 2010-07-15T04:10:39Z [Term] id: SP:0000356 name: Cross section average RGB blue def: "Measurement of the color blue of the cross section on RGB scale." [SGN:DF] is_a: SP:0000353 ! endocarp cross section color created_by: Naama creation_date: 2010-07-15T04:10:55Z [Term] id: SP:0000357 name: Cross section average L value def: "THe average L value of all the pixels in CIELab color space." [JASHS:(2008) 133(4)\:579-586] is_a: SP:0000353 ! endocarp cross section color created_by: Naama creation_date: 2010-07-15T04:12:02Z [Term] id: SP:0000358 name: Cross section average 'a' value def: "THe average 'a' value of all the pixels in CIELab color space." [JASHS:(2008) 133(4)\:579-586] is_a: SP:0000353 ! endocarp cross section color created_by: Naama creation_date: 2010-07-15T04:16:45Z [Term] id: SP:0000359 name: Cross section average 'b' value def: "THe average 'b' value of all the pixels in CIELab color space." [JASHS:(2008) 133(4)\:579-586] is_a: SP:0000353 ! endocarp cross section color created_by: Naama creation_date: 2010-07-15T04:17:20Z [Term] id: SP:0000360 name: Cross section average luminosity def: "A measure of brightness. Average luminosity of all the pixels in the cross section. Luminosity = (maxCol + minCol) * 240/(2* 255) where maxCol is the highest of the RGB values, and minCol is the lowest value per pixel." [JASHS:(2008) 133(4)\:579-586] is_a: SP:0000353 ! endocarp cross section color created_by: Naama creation_date: 2010-07-15T04:20:01Z [Term] id: SP:0000361 name: Cross section average hue def: "Hue is a measure of color in CIELab colorspace.\nFor 'a' values > 0, hue is 180/pi * cos[a / chroma].\nFor 'a' values < 0 , hues is 360 - {180/pi * acos[a / chroma] }." [JASHS:(2008) 133(4)\:579-586] is_a: SP:0000353 ! endocarp cross section color created_by: Naama creation_date: 2010-07-15T04:23:43Z [Term] id: SP:0000362 name: Cross section average chroma def: "Chroma is a measure of saturation in CIELab colorspace.\nChroma is the square root of (a^2 + b^2)." [JASHS:(2008) 133(4)\:579-586] is_a: SP:0000353 ! endocarp cross section color created_by: Naama creation_date: 2010-07-15T04:27:15Z [Term] id: SP:0000363 name: flower fasciation is_a: SP:0000008 ! flower morphology created_by: Naama creation_date: 2010-07-19T10:27:21Z [Term] id: SP:0000364 name: peduncle def: "The stalk of an inflorescence; that part of the inflorescence below the first flower or inflorescence branch and above the last foliage leaf/pair of foliage leaves." [PO:0009053] synonym: "inflorescence abscission layer" RELATED [] xref: PO:0009053 is_a: SP:0000007 ! inflorescence created_by: Naama creation_date: 2010-07-19T10:44:41Z [Term] id: SP:0000365 name: fruit ripening timing is_a: SP:0000013 ! fruit ripening created_by: Naama creation_date: 2010-07-19T11:25:30Z [Term] id: SP:0000366 name: days to fruit ripening synonym: "days to fruit maturity" RELATED [] is_a: SP:0000365 ! fruit ripening timing created_by: Naama creation_date: 2010-07-19T11:26:41Z [Term] id: SP:0000367 name: distal fruit end scar synonym: "blossom scar" RELATED [] relationship: part_of SP:0000070 ! distal fruit end shape created_by: Naama creation_date: 2010-07-19T11:30:20Z [Term] id: SP:0000368 name: distal fruit end scar size synonym: "blossom scar size" EXACT [] is_a: SP:0000367 ! distal fruit end scar created_by: Naama creation_date: 2010-07-19T11:31:07Z [Term] id: SP:0000369 name: proximal angle micro 2% is_a: SP:0000074 ! proximal fruit end angle created_by: Naama creation_date: 2010-07-19T12:39:49Z [Term] id: SP:0000370 name: proximal angle macro 20% is_a: SP:0000074 ! proximal fruit end angle created_by: Naama creation_date: 2010-07-19T12:40:13Z [Term] id: SP:0000371 name: pericarp relationship: part_of SP:0000037 ! fruit created_by: Naama creation_date: 2010-07-19T01:12:38Z [Term] id: SP:0000372 name: pericarp thickness synonym: "pericarp width" RELATED [] relationship: part_of SP:0000371 ! pericarp created_by: Naama creation_date: 2010-07-19T01:14:10Z [Term] id: SP:0000373 name: fruit anthocyanin content is_a: SP:0000016 ! anthocyanin content is_a: SP:0000167 ! fruit metabolites created_by: Naama creation_date: 2010-09-17T03:40:45Z [Term] id: SP:0000374 name: Cotyledon relationship: part_of SP:0000001 ! seedling created_by: Naama creation_date: 2011-01-17T11:45:36Z [Term] id: SP:0000375 name: cotyledon color relationship: part_of SP:0000374 ! Cotyledon created_by: Naama creation_date: 2011-01-17T11:47:14Z [Term] id: SP:0000376 name: cotyledon number relationship: part_of SP:0000374 ! Cotyledon created_by: Naama creation_date: 2011-01-17T11:47:14Z [Term] id: SP:0000377 name: cotyledon size relationship: part_of SP:0000374 ! Cotyledon created_by: Naama creation_date: 2011-01-17T11:47:14Z [Term] id: SP:0000378 name: cotyledon morphology relationship: part_of SP:0000374 ! Cotyledon created_by: Naama creation_date: 2011-01-17T11:47:14Z [Term] id: SP:0000379 name: seed germination inside fruit def: "The seed begins germinating inside the fruit. Often associated with a delay in fruit harvesting (the fruit is too ripe), the pre- germination could also be caused by an altered fruit flesh pH or by hormonal imbalance." [LycoTILL:OD] is_a: SP:0000110 ! germination is_a: SP:0000197 ! post harvest quality created_by: Naama creation_date: 2011-01-31T09:54:16Z [Term] id: SP:0000380 name: increased fruit number is_a: SP:0000106 ! fruit number created_by: Naama creation_date: 2011-01-31T09:59:18Z [Term] id: SP:0000381 name: decreased fruit number is_a: SP:0000106 ! fruit number created_by: Naama creation_date: 2011-01-31T09:59:18Z [Term] id: SP:0000382 name: no fruit setting is_a: SP:0000106 ! fruit number created_by: Naama creation_date: 2011-01-31T09:59:18Z [Term] id: SP:0000383 name: intermediate inflorescence xref: PO:0001083 xref: PO:0009049 is_a: SP:0000071 ! inflorescence structure created_by: Naama creation_date: 2011-09-16T02:49:09Z [Term] id: SP:0000384 name: fruit height at widest position asymmetry def: "The ratio of the height at which the maximum width occurs, to the Maximum Height." [SGN:EVDK] is_a: SP:0000058 ! fruit shape eccentric created_by: Naama creation_date: 2011-09-26T10:46:06Z [Term] id: SP:0000385 name: sugars is_a: SP:0000019 ! biochemical metabolites created_by: Naama creation_date: 2012-11-01T04:06:13Z [Term] id: SP:0000386 name: fructose is_a: SP:0000385 ! sugars created_by: Naama creation_date: 2012-11-01T04:07:53Z [Term] id: SP:0000387 name: field sucrose def: "sucrose measured in the field (mg/g fresh weight)" [SGN:NM] is_a: SP:0000214 ! sucrose created_by: Naama creation_date: 2012-11-01T04:16:50Z [Term] id: SP:0000388 name: storage sucrose def: "sucrose measured in storage (mg/g fresh weight)" [SGN:NM] is_a: SP:0000197 ! post harvest quality is_a: SP:0000214 ! sucrose created_by: Naama creation_date: 2012-11-01T04:18:34Z [Term] id: SP:0000389 name: field glucose def: "glucose measured in the field (mg/g fresh weight)" [SGN:NM] is_a: SP:0000215 ! glucose created_by: Naama creation_date: 2012-11-01T04:19:27Z [Term] id: SP:0000390 name: storage glucose def: "glucose measured in the field (mg/g fresh weight)" [SGN:NM] is_a: SP:0000197 ! post harvest quality is_a: SP:0000215 ! glucose created_by: Naama creation_date: 2012-11-01T04:19:27Z [Term] id: SP:0000391 name: potato fry color def: "potato fry color rating based on reflectance measured from light to dark." [SGN:NM] is_a: SP:0000221 ! processing quality created_by: Naama creation_date: 2012-11-01T04:24:02Z [Term] id: SP:0000706 name: male sterility synonym: "TO:0000437" RELATED [] xref: PO:0007042 xref: PO:0007616 xref: PO:0009046 is_a: SP:0000141 ! partial sterility is_a: SP:0000142 ! full sterility [Term] id: SP:0000707 name: female sterility synonym: "TO:0000358" RELATED [] xref: PO:0007042 xref: PO:0007616 xref: PO:0009046 is_a: SP:0000141 ! partial sterility is_a: SP:0000142 ! full sterility [Term] id: SP:0001000 name: Solanaceae phenotype ontology [Typedef] id: part_of name: part of